Citrus Sinensis ID: 017640

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
Protein Sequence
MEAVVPKLASFNLLNPKSKSKSAIRRFSSALCVSSSPSVTSTDSVSLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTTL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccEEEEEcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEccHHHHHHHHHHHHHHcccccccEEEEEcccccccccHHHHHHHHHccEEEEEEccccccccHHHHHHHccccccEEEEEEEccccccccHHHHHHHHHHHcccEEEEEccccccccccccccccccEEEEccccccccccccHHHcHHHHHHcccccccccccccEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccEEEccccccccccccccccHHHHHHcccccccccccccccccHHHHHHHHHHccHHccEcccccccEEccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHEEEEccHHHHHHHHHHHcHHHHcccccEEEEEccccHHHcHHHHHHHHHHccEEEEEcEcccccEcHHHHHHHccccEEEEEEEcEccccccEccHHHHHHHHHHcccEEEEEcccccccccccHHHHcccEEEEEHHHcccccccEEEEEcHHHHHHccccccccccEEEEEcccEEEccccHHHccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
meavvpklasfnllnpksksksAIRRFSSalcvssspsvtstdsvslghitrpdfpilhqevygskklvyldnaatsqKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWglsnlksgdEVILTVAEHHSAIVPWQLVAQKTGAnlkflnlnddespdlDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVAsshkmcgptgigflfgksdllsamppflgggemisdvfldhstfadppsrfeagtpaiGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTTL
Flexible Loop (DISEMBL)
meavvpklasfnllnpksksksaIRRFSsalcvssspsvtstdsvslghitrpdfpilHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTTL
Low Complexity Region (SEG)
MEAVVPKLASFNLLNPKSKSKSAIRRFssalcvssspsvtstdsvsLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPaigeaiglgaaiDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTTL
Disordered region (IsUnstruct)
*********************************************SLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN************MLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQ*******
Disordered Region (DISOPRED)
**********************************************LGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTTL
Disordered Region (DISEMBL)
MEAVVPKLASFNLLNPKSKSKSAIRRFS*****************SLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTTL
Disordered Region (DISPRO)
*EAVVPKLASFNLLNP*********************SVTSTDSVSLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTTL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEAVVPKLASFNLLNPKSKSKSAIRRFSSALCVSSSPSVTSTDSVSLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTTL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	368	2.2.26 [Sep-21-2011]
Q93WX6	463	Cysteine desulfurase 2, c	yes	no	0.951	0.755	0.767	1e-152
Q55793	420	Probable cysteine desulfu	N/A	no	0.828	0.726	0.647	1e-113
Q9XAD5	418	Probable cysteine desulfu	yes	no	0.809	0.712	0.549	1e-92
O32164	406	Probable cysteine desulfu	yes	no	0.812	0.736	0.536	8e-90
Q9HMM6	415	Probable cysteine desulfu	yes	no	0.809	0.718	0.526	2e-87
Q9K7A0	406	Probable cysteine desulfu	yes	no	0.815	0.738	0.541	2e-86
Q8NXH0	413	Probable cysteine desulfu	yes	no	0.820	0.731	0.501	1e-82
Q6GB11	413	Probable cysteine desulfu	yes	no	0.820	0.731	0.501	1e-82
Q6GIH2	413	Probable cysteine desulfu	yes	no	0.820	0.731	0.501	1e-82
Q5HHH0	413	Probable cysteine desulfu	yes	no	0.820	0.731	0.501	1e-82

>sp|Q93WX6|NFS2_ARATH Cysteine desulfurase 2, chloroplastic OS=Arabidopsis thaliana GN=NFS2 PE=1 SV=1

 Score =  537 bits (1383), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 274/357 (76%), Positives = 305/357 (85%), Gaps = 7/357 (1%)

Query: 1   MEAVVPKLASF-NLLNPKSKSKSAIR-----RFSSALCVSSSPSVTSTDSVSLGHITRPD 54
           ME V  KL SF N ++   +S S +R        SA   SS+   T ++SVSLGH  R D
Sbjct: 1   MEGVAMKLPSFPNAISIGHRSFSRVRCSSSLSVCSAAAASSATISTDSESVSLGHRVRKD 60

Query: 55  FPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYE 114
           F ILHQEV GSK LVYLD+AATSQKP AVL ALQNYYE YNSNVHRGIH+LSAKATDE+E
Sbjct: 61  FRILHQEVNGSK-LVYLDSAATSQKPAAVLDALQNYYEFYNSNVHRGIHYLSAKATDEFE 119

Query: 115 LARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPW 174
           LARKKVA FINASDS EIVFT+NATEAINLVAYSWGLSNLK GDEVILTVAEHHS IVPW
Sbjct: 120 LARKKVARFINASDSREIVFTRNATEAINLVAYSWGLSNLKPGDEVILTVAEHHSCIVPW 179

Query: 175 QLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWS 234
           Q+V+QKTGA LKF+ LN+DE PD++KL+E++S KTKLV +HH+SN+LAS LPIEEIV W+
Sbjct: 180 QIVSQKTGAVLKFVTLNEDEVPDINKLRELISPKTKLVAVHHVSNVLASSLPIEEIVVWA 239

Query: 235 HDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFL 294
           HDVGAKVLVDACQSVPHMVVDVQ L+ADFLVASSHKMCGPTGIGFL+GKSDLL +MPPFL
Sbjct: 240 HDVGAKVLVDACQSVPHMVVDVQKLNADFLVASSHKMCGPTGIGFLYGKSDLLHSMPPFL 299

Query: 295 GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVK 351
           GGGEMISDVFLDHST+A+PPSRFEAGTPAIGEAI LGAA+DYLS IGM KIH YEV+
Sbjct: 300 GGGEMISDVFLDHSTYAEPPSRFEAGTPAIGEAIALGAAVDYLSGIGMPKIHEYEVE 356

Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. Supplies the inorganic sulfur for iron-sulfur (Fe-S) clusters.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 6

>sp|Q55793|CSD_SYNY3 Probable cysteine desulfurase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=csd PE=1 SV=1

 Score =  410 bits (1053), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 198/306 (64%), Positives = 235/306 (76%), Gaps = 1/306 (0%)

Query: 46  SLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFL 105
           SL    R DFPIL+QE+ G   LVYLDNAATSQKP AVL+ L +YYE  N+NVHRG H L
Sbjct: 8   SLAATVRQDFPILNQEING-HPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQL 66

Query: 106 SAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVA 165
           S +ATD YE  R KVA FINA    EIV+T+NATEAINLVAYSWG++NLK+GDE+I TV 
Sbjct: 67  SVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVM 126

Query: 166 EHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASIL 225
           EHHS +VPWQ+VA KTGA LKF+ L++ ES DL+  K +LS KTKLV + HISN L  + 
Sbjct: 127 EHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVN 186

Query: 226 PIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSD 285
           P EEI   +H  GAKVLVDACQS PH  +DVQ +D D+LVAS HKMC PTGIGFL+GK +
Sbjct: 187 PAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEE 246

Query: 286 LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI 345
           +L AMPPF GGGEMI++VF DH T  + P +FEAGTPAI EAI LGAA+DYL+ +GM+ I
Sbjct: 247 ILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENI 306

Query: 346 HAYEVK 351
           H YEV+
Sbjct: 307 HNYEVE 312

Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

>sp|Q9XAD5|CSD_STRCO Probable cysteine desulfurase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=csd PE=3 SV=1

 Score =  340 bits (871), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 166/302 (54%), Positives = 217/302 (71%), Gaps = 4/302 (1%)

Query: 52  RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
           R DFPIL ++V+   KLVYLDNAATSQKP  VL AL  YYE YN+NVHRG+H L+ +AT 
Sbjct: 14  RKDFPILDRQVHDGHKLVYLDNAATSQKPRQVLDALSEYYERYNANVHRGVHVLAEEATA 73

Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSN----LKSGDEVILTVAEH 167
            YE AR KVA FINA    E++FTKNA+E++NLVA   G ++    +    E+++T  EH
Sbjct: 74  LYEGARDKVAEFINAPSRDEVIFTKNASESLNLVANMLGWADDPYRVDHETEIVITEMEH 133

Query: 168 HSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPI 227
           HS IVPWQL+AQ+TGA L++  L DD   DL  + E+++ KTK+V    +SN+L +  P+
Sbjct: 134 HSNIVPWQLLAQRTGAKLRWFGLTDDGRLDLSNIDEVITEKTKVVSFVLVSNILGTQNPV 193

Query: 228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLL 287
           E IV  + +VGA V +DA Q+ PHM +DVQ L ADF+  + HKMCGPTGIG L+G+ +LL
Sbjct: 194 EAIVRRAQEVGALVCIDASQAAPHMPLDVQALQADFVAFTGHKMCGPTGIGVLWGRQELL 253

Query: 288 SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHA 347
             +PPFLGGGEMI  V +  ST+A  P +FEAGTP + +A+GLGAAIDYL++IGM KI A
Sbjct: 254 EDLPPFLGGGEMIETVSMHSSTYAPAPHKFEAGTPPVAQAVGLGAAIDYLNSIGMDKILA 313

Query: 348 YE 349
           +E
Sbjct: 314 HE 315

Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.

Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) (taxid: 100226)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

>sp|O32164|CSD_BACSU Probable cysteine desulfurase OS=Bacillus subtilis (strain 168) GN=csd PE=3 SV=1

 Score =  330 bits (847), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 161/300 (53%), Positives = 209/300 (69%), Gaps = 1/300 (0%)

Query: 52  RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
           R  FPILHQ+V G   LVYLD+AATSQKP AV++ L  YY  YNSNVHRG+H L  +ATD
Sbjct: 7   REQFPILHQQVNG-HDLVYLDSAATSQKPRAVIETLDKYYNQYNSNVHRGVHTLGTRATD 65

Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
            YE AR+KV  FINA    EI+FTK  T ++N+VA S+  +NLK GDEV++T  EHH+ I
Sbjct: 66  GYEGAREKVRKFINAKSMAEIIFTKGTTTSLNMVALSYARANLKPGDEVVITYMEHHANI 125

Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
           +PWQ   + TGA LK++ L +D +  L+ ++E ++  TK+V + H+SN+L ++ PI+E+ 
Sbjct: 126 IPWQQAVKATGATLKYIPLQEDGTISLEDVRETVTSNTKIVAVSHVSNVLGTVNPIKEMA 185

Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
             +HD GA ++VD  QS PHM +DVQ LD DF   SSHKMCGPTG+G L+GK  LL  M 
Sbjct: 186 KIAHDNGAVIVVDGAQSTPHMKIDVQDLDCDFFALSSHKMCGPTGVGVLYGKKALLENME 245

Query: 292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVK 351
           P   GGEMI  V L  ST+ + P +FEAGTP I  AIGLGAAID+L  IG+ +I  +E K
Sbjct: 246 PAEFGGEMIDFVGLYESTWKELPWKFEAGTPIIAGAIGLGAAIDFLEEIGLDEISRHEHK 305

Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

>sp|Q9HMM6|CSD_HALSA Probable cysteine desulfurase OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) GN=csd PE=3 SV=1

 Score =  322 bits (826), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 157/298 (52%), Positives = 202/298 (67%)

Query: 52  RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
           R DFPIL +EV G + LVYLDNAATS  P  V+ A+ +YY  YNSNVHRG+H LS +A+ 
Sbjct: 15  RADFPILEREVAGGEDLVYLDNAATSHTPEPVVDAIADYYRRYNSNVHRGLHELSQEASV 74

Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
            YE A  K+AAF+   D  E+VFTKN TEA NLVA++WGL+ L  GDEV+LT  EHH+++
Sbjct: 75  AYEDAHDKLAAFVGGEDREEMVFTKNTTEAENLVAFAWGLNELGPGDEVVLTQMEHHASL 134

Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
           V WQ VA +TGA +K++ + DD   D+D   +M++  T LV   HISN L ++ P+ E+ 
Sbjct: 135 VTWQQVADETGAEVKYIPITDDGHLDMDAAADMITDDTALVNAVHISNTLGTVNPVGELA 194

Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
             +HD GA + VD  Q+ P   VDVQ +DADF   S HKM GPTGIG L+GK  LL+ M 
Sbjct: 195 DIAHDHGAYIFVDGAQAAPTRAVDVQEIDADFYAFSGHKMLGPTGIGCLYGKRHLLAEME 254

Query: 292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYE 349
           PFL GG+MI  V  + +T+ DPP +FEAGTP I + I L  A+DYL  IGM  I A+E
Sbjct: 255 PFLYGGDMIERVSYEDATWNDPPWKFEAGTPVIAQGIALAEAVDYLQDIGMDAIRAHE 312

Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) (taxid: 64091)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

>sp|Q9K7A0|CSD_BACHD Probable cysteine desulfurase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=csd PE=3 SV=2

 Score =  319 bits (818), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 163/301 (54%), Positives = 208/301 (69%), Gaps = 1/301 (0%)

Query: 49  HITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAK 108
           H  +  FP+L QEV GS  LVYLD+AATSQKPIAV++AL +YY  YNSNVHRG+H L   
Sbjct: 4   HEIKKLFPVLDQEVNGSP-LVYLDSAATSQKPIAVIEALDDYYRRYNSNVHRGVHTLGTL 62

Query: 109 ATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHH 168
           ATD YE AR+K+  FI+AS + EI+FT+  T AINLVA S+G +NL  GDE+++T  EHH
Sbjct: 63  ATDGYEGAREKIRRFIHASSTEEIIFTRGTTTAINLVAASYGRANLGEGDEIVITPMEHH 122

Query: 169 SAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIE 228
           S I+PWQ VA+ TGA L +L L  D +  ++ +++ +S KTK+V I H+SN+L +I P++
Sbjct: 123 SNIIPWQQVAKATGATLTYLPLQKDGTIKIEDVEKTISEKTKIVAIMHVSNVLGTINPVK 182

Query: 229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLS 288
           EI   +H  GA +LVD  QS PHM +DVQ L  DF   S HKM GPTGIG L+GK   L 
Sbjct: 183 EIAEIAHRHGAIMLVDGAQSAPHMKIDVQELGCDFFAFSGHKMAGPTGIGVLYGKKAHLE 242

Query: 289 AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAY 348
            M P   GGEMI  V L  ST+ + P +FE GTP I  AIGLGAAID+L  IG+ +I  +
Sbjct: 243 KMEPVEFGGEMIDFVGLYDSTWKELPWKFEGGTPIIAGAIGLGAAIDFLEDIGLDEIEKH 302

Query: 349 E 349
           E
Sbjct: 303 E 303

Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.

Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) (taxid: 272558)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

>sp|Q8NXH0|CSD_STAAW Probable cysteine desulfurase OS=Staphylococcus aureus (strain MW2) GN=csd PE=3 SV=1

 Score =  306 bits (785), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 152/303 (50%), Positives = 207/303 (68%), Gaps = 1/303 (0%)

Query: 54  DFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEY 113
           DFPIL Q+V G K+L YLD+ ATSQ P+ VL  L++YY+ YNSNVHRG+H L + ATD Y
Sbjct: 14  DFPILDQKVNG-KRLAYLDSTATSQTPVQVLNVLEDYYKRYNSNVHRGVHTLGSLATDGY 72

Query: 114 ELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVP 173
           E AR+ V  FINA    EI+FT+  T +INLVA+S+G +N++ GDE+++T  EHH+ IVP
Sbjct: 73  ENARETVRRFINAKYFEEIIFTRGTTASINLVAHSYGDANVEEGDEIVVTEMEHHANIVP 132

Query: 174 WQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHW 233
           WQ +A++  A LKF+ +  D   +++ +K+ ++ KTK+V I HISN+L +I  ++ I   
Sbjct: 133 WQQLAKRKNATLKFIPMTADGELNIEDIKQTINDKTKIVAIAHISNVLGTINDVKTIAEI 192

Query: 234 SHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPF 293
           +H  GA + VD  Q+ PHM +D+Q ++ADF   S HKM GPTGIG LFGK +LL  M P 
Sbjct: 193 AHQHGAIISVDGAQAAPHMKLDMQEMNADFYSFSGHKMLGPTGIGVLFGKRELLQKMEPI 252

Query: 294 LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWI 353
             GG+MI  V    +T+AD P++FEAGTP I +AIGL  AI YL  IG   IH YE +  
Sbjct: 253 EFGGDMIDFVSKYDATWADLPTKFEAGTPLIAQAIGLAEAIRYLERIGFDAIHKYEQELT 312

Query: 354 ICS 356
           I +
Sbjct: 313 IYA 315

Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.

Staphylococcus aureus (strain MW2) (taxid: 196620)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

>sp|Q6GB11|CSD_STAAS Probable cysteine desulfurase OS=Staphylococcus aureus (strain MSSA476) GN=csd PE=3 SV=1

 Score =  306 bits (785), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 152/303 (50%), Positives = 207/303 (68%), Gaps = 1/303 (0%)

Query: 54  DFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEY 113
           DFPIL Q+V G K+L YLD+ ATSQ P+ VL  L++YY+ YNSNVHRG+H L + ATD Y
Sbjct: 14  DFPILDQKVNG-KRLAYLDSTATSQTPVQVLNVLEDYYKRYNSNVHRGVHTLGSLATDGY 72

Query: 114 ELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVP 173
           E AR+ V  FINA    EI+FT+  T +INLVA+S+G +N++ GDE+++T  EHH+ IVP
Sbjct: 73  ENARETVRRFINAKYFEEIIFTRGTTASINLVAHSYGDANVEEGDEIVVTEMEHHANIVP 132

Query: 174 WQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHW 233
           WQ +A++  A LKF+ +  D   +++ +K+ ++ KTK+V I HISN+L +I  ++ I   
Sbjct: 133 WQQLAKRKNATLKFIPMTADGELNIEDIKQTINDKTKIVAIAHISNVLGTINDVKTIAEI 192

Query: 234 SHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPF 293
           +H  GA + VD  Q+ PHM +D+Q ++ADF   S HKM GPTGIG LFGK +LL  M P 
Sbjct: 193 AHQHGAIISVDGAQAAPHMKLDMQEMNADFYSFSGHKMLGPTGIGVLFGKRELLQKMEPI 252

Query: 294 LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWI 353
             GG+MI  V    +T+AD P++FEAGTP I +AIGL  AI YL  IG   IH YE +  
Sbjct: 253 EFGGDMIDFVSKYDATWADLPTKFEAGTPLIAQAIGLAEAIRYLERIGFDAIHKYEQELT 312

Query: 354 ICS 356
           I +
Sbjct: 313 IYA 315

Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.

Staphylococcus aureus (strain MSSA476) (taxid: 282459)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

>sp|Q6GIH2|CSD_STAAR Probable cysteine desulfurase OS=Staphylococcus aureus (strain MRSA252) GN=csd PE=3 SV=1

 Score =  306 bits (785), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 152/303 (50%), Positives = 207/303 (68%), Gaps = 1/303 (0%)

Query: 54  DFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEY 113
           DFPIL Q+V G K+L YLD+ ATSQ P+ VL  L++YY+ YNSNVHRG+H L + ATD Y
Sbjct: 14  DFPILDQKVNG-KRLAYLDSTATSQTPVQVLNVLEDYYKRYNSNVHRGVHTLGSLATDGY 72

Query: 114 ELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVP 173
           E AR+ V  FINA    EI+FT+  T +INLVA+S+G +N++ GDE+++T  EHH+ IVP
Sbjct: 73  ENARETVRRFINAKYFEEIIFTRGTTASINLVAHSYGDANVEEGDEIVVTEMEHHANIVP 132

Query: 174 WQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHW 233
           WQ +A++  A LKF+ +  D   +++ +K+ ++ KTK+V I HISN+L +I  ++ I   
Sbjct: 133 WQQLAKRKNATLKFIPMTADGELNIEDIKQTINDKTKIVAIAHISNVLGTINDVKTIAEI 192

Query: 234 SHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPF 293
           +H  GA + VD  Q+ PHM +D+Q ++ADF   S HKM GPTGIG LFGK +LL  M P 
Sbjct: 193 AHQHGAIISVDGAQAAPHMKLDMQEMNADFYSFSGHKMLGPTGIGVLFGKRELLQKMEPI 252

Query: 294 LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWI 353
             GG+MI  V    +T+AD P++FEAGTP I +AIGL  AI YL  IG   IH YE +  
Sbjct: 253 EFGGDMIDFVSKYDATWADLPTKFEAGTPLIAQAIGLAEAIRYLERIGFDAIHKYEQELT 312

Query: 354 ICS 356
           I +
Sbjct: 313 IYA 315

Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.

Staphylococcus aureus (strain MRSA252) (taxid: 282458)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

>sp|Q5HHH0|CSD_STAAC Probable cysteine desulfurase OS=Staphylococcus aureus (strain COL) GN=csd PE=3 SV=1

 Score =  306 bits (785), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 152/303 (50%), Positives = 207/303 (68%), Gaps = 1/303 (0%)

Query: 54  DFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEY 113
           DFPIL Q+V G K+L YLD+ ATSQ P+ VL  L++YY+ YNSNVHRG+H L + ATD Y
Sbjct: 14  DFPILDQKVNG-KRLAYLDSTATSQTPVQVLNVLEDYYKRYNSNVHRGVHTLGSLATDGY 72

Query: 114 ELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVP 173
           E AR+ V  FINA    EI+FT+  T +INLVA+S+G +N++ GDE+++T  EHH+ IVP
Sbjct: 73  ENARETVRRFINAKYFEEIIFTRGTTASINLVAHSYGDANVEEGDEIVVTEMEHHANIVP 132

Query: 174 WQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHW 233
           WQ +A++  A LKF+ +  D   +++ +K+ ++ KTK+V I HISN+L +I  ++ I   
Sbjct: 133 WQQLAKRKNATLKFIPMTADGELNIEDIKQTINDKTKIVAIAHISNVLGTINDVKTIAEI 192

Query: 234 SHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPF 293
           +H  GA + VD  Q+ PHM +D+Q ++ADF   S HKM GPTGIG LFGK +LL  M P 
Sbjct: 193 AHQHGAIISVDGAQAAPHMKLDMQEMNADFYSFSGHKMLGPTGIGVLFGKRELLQKMEPI 252

Query: 294 LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWI 353
             GG+MI  V    +T+AD P++FEAGTP I +AIGL  AI YL  IG   IH YE +  
Sbjct: 253 EFGGDMIDFVSKYDATWADLPTKFEAGTPLIAQAIGLAEAIRYLERIGFDAIHKYEQELT 312

Query: 354 ICS 356
           I +
Sbjct: 313 IYA 315

Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.

Staphylococcus aureus (strain COL) (taxid: 93062)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	368
225435925	463	PREDICTED: cysteine desulfurase 2, chlor	0.942	0.749	0.805	1e-161
255564466	469	cysteine desulfurylase, putative [Ricinu	0.951	0.746	0.771	1e-158
356555847	468	PREDICTED: cysteine desulfurase 2, chlor	0.945	0.743	0.752	1e-154
224106029	469	predicted protein [Populus trichocarpa]	0.953	0.748	0.729	1e-153
449444833	485	PREDICTED: cysteine desulfurase 2, chlor	0.934	0.709	0.736	1e-152
22329419	463	cysteine desulfurase 2 [Arabidopsis thal	0.951	0.755	0.767	1e-150
297849158	466	hypothetical protein ARALYDRAFT_470910 [	0.951	0.751	0.755	1e-149
6664318	526	T27G7.17 [Arabidopsis thaliana]	0.970	0.678	0.728	1e-146
116789873	485	unknown [Picea sitchensis]	0.899	0.682	0.746	1e-145
357462739	327	Cysteine desulfurase [Medicago truncatul	0.855	0.963	0.741	1e-137

>gi|225435925|ref|XP_002267920.1| PREDICTED: cysteine desulfurase 2, chloroplastic [Vitis vinifera] gi|296083920|emb|CBI24308.3| unnamed protein product [Vitis vinifera]

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 286/355 (80%), Positives = 310/355 (87%), Gaps = 8/355 (2%)

Query: 3   AVVPKLASFNLLNPKSKSKSA------IRRFS-SALCVSSSPSVTSTDSVSLGHITRPDF 55
           A V K  SF  LNP   S ++       RRFS SA   ++    +S  SVSLGH+TRPDF
Sbjct: 2   ASVLKFPSFKFLNPNPISPTSASVQVGFRRFSCSAPSSAAVEGDSSIGSVSLGHLTRPDF 61

Query: 56  PILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYEL 115
           PILHQEV GSK LVYLDNAATSQKP AVLKALQNYYEAYNSNVHRGIHFLSAKATDEYE 
Sbjct: 62  PILHQEVNGSK-LVYLDNAATSQKPTAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYES 120

Query: 116 ARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQ 175
           AR+KVAAFINAS+ GEI+FT+NATEAINLVAYSWGLSNLK  DE++LTVAEHHSAIVPWQ
Sbjct: 121 ARRKVAAFINASEPGEIIFTRNATEAINLVAYSWGLSNLKPEDEIVLTVAEHHSAIVPWQ 180

Query: 176 LVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSH 235
           LVAQKTGA LKF+NL +DE PD++KLKEM+SRKTKL+V+HHISN+LAS LPI +IVHW+H
Sbjct: 181 LVAQKTGAILKFVNLTEDEVPDVEKLKEMISRKTKLLVVHHISNVLASALPIYDIVHWAH 240

Query: 236 DVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLG 295
            VGAKVLVDACQSVPHM VDVQ LDADFLVASSHKMCGPTGIGFL+GKSDLL AMPPFLG
Sbjct: 241 AVGAKVLVDACQSVPHMAVDVQRLDADFLVASSHKMCGPTGIGFLYGKSDLLFAMPPFLG 300

Query: 296 GGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEV 350
           GGEMISDVFLDHSTFA+PPSRFEAGTPAIGEAIGLGAAIDYLS IGMQKIH YEV
Sbjct: 301 GGEMISDVFLDHSTFAEPPSRFEAGTPAIGEAIGLGAAIDYLSAIGMQKIHDYEV 355

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564466|ref|XP_002523229.1| cysteine desulfurylase, putative [Ricinus communis] gi|223537525|gb|EEF39150.1| cysteine desulfurylase, putative [Ricinus communis]

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 277/359 (77%), Positives = 314/359 (87%), Gaps = 9/359 (2%)

Query: 1   MEAVVPKLASFNLLNPKSKSKSA---IRRFSSALCVSSSPSVTSTD-----SVSLGHITR 52
           M+ VV KL S  LLNPKS + S+   + +FSS    + + + T  D     S+SLGHITR
Sbjct: 5   MDGVVFKLPSIKLLNPKSTTHSSPIRLAKFSSFAIPALATTGTEGDQALHASLSLGHITR 64

Query: 53  PDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDE 112
           PDFPILHQEV GSK LVYLDNAATSQKP +VLKA+QNYYE+YNSNVHRGIH+LSAKATDE
Sbjct: 65  PDFPILHQEVNGSK-LVYLDNAATSQKPNSVLKAIQNYYESYNSNVHRGIHYLSAKATDE 123

Query: 113 YELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIV 172
           YELARKKVAAFINASDS EIVFT+NATEAINLVAYSWG +NLK GDEVILT+AEHHS IV
Sbjct: 124 YELARKKVAAFINASDSREIVFTRNATEAINLVAYSWGFTNLKPGDEVILTLAEHHSNIV 183

Query: 173 PWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVH 232
           PWQLVA +TGA L+F++LN++E PD+ KLKE +S KTKLVV+HHISN+LAS LP+E+I+H
Sbjct: 184 PWQLVANRTGAVLRFVDLNENEVPDVLKLKETISEKTKLVVVHHISNVLASFLPVEDIIH 243

Query: 233 WSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPP 292
           W+H  GAKVL+DACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFL+GKSD+LS MPP
Sbjct: 244 WAHGAGAKVLIDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLYGKSDILSTMPP 303

Query: 293 FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVK 351
           FLGGGEMI+DVFLDHST+ADPPSRFEAGTPAIGEAIGLGAAIDYL  IGMQKIH YE++
Sbjct: 304 FLGGGEMIADVFLDHSTYADPPSRFEAGTPAIGEAIGLGAAIDYLLGIGMQKIHDYEME 362

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555847|ref|XP_003546241.1| PREDICTED: cysteine desulfurase 2, chloroplastic-like [Glycine max]

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 274/364 (75%), Positives = 308/364 (84%), Gaps = 16/364 (4%)

Query: 1   MEAVVPKLASFNL--------LNPKSKS--KSAIRRFSSALCVSSSPSVTSTDSV---SL 47
           ME ++PKL SF          +  +S S  +   RR S  +C S+     +   V   SL
Sbjct: 1   MEVLLPKLPSFKFPSATYCCSITSRSSSYVRFGFRRVS--VCASTVNEAVAEPIVGFLSL 58

Query: 48  GHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSA 107
           GH TRP FPILHQEV GSK LVYLDNAATSQKP AVLKALQNYYEAYNSNVHRGIHFLSA
Sbjct: 59  GHSTRPHFPILHQEVNGSK-LVYLDNAATSQKPTAVLKALQNYYEAYNSNVHRGIHFLSA 117

Query: 108 KATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEH 167
           +ATDEYE AR+KVA+FINA DS EIVFTKNA+EAINLVAYSWGLSNLK  DE+ILTVAEH
Sbjct: 118 RATDEYESARRKVASFINAIDSREIVFTKNASEAINLVAYSWGLSNLKPDDEIILTVAEH 177

Query: 168 HSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPI 227
           HSAIVPWQ+VAQKTGA LKF++LN DE PD+DKLKEMLSRKTK+VV+HH+SN+LAS+LPI
Sbjct: 178 HSAIVPWQIVAQKTGAVLKFVDLNQDEIPDIDKLKEMLSRKTKIVVVHHVSNVLASVLPI 237

Query: 228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLL 287
           ++I  W+HDVGAKVLVDACQSVPHM++DVQ L+ DFLVASSHKMCGPTGIGFL+GK DLL
Sbjct: 238 QDIAQWAHDVGAKVLVDACQSVPHMMIDVQSLNVDFLVASSHKMCGPTGIGFLYGKIDLL 297

Query: 288 SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHA 347
           S+MPPFLGGGEMISDV+LDHST+A+PPSRFEAGTPAIGEAIGLGAAIDYLS IGMQ IH 
Sbjct: 298 SSMPPFLGGGEMISDVYLDHSTYAEPPSRFEAGTPAIGEAIGLGAAIDYLSGIGMQTIHD 357

Query: 348 YEVK 351
           YEV+
Sbjct: 358 YEVE 361

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106029|ref|XP_002314018.1| predicted protein [Populus trichocarpa] gi|222850426|gb|EEE87973.1| predicted protein [Populus trichocarpa]

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 264/362 (72%), Positives = 308/362 (85%), Gaps = 11/362 (3%)

Query: 1   MEAVVPKLASFNLLNPKS---KSKSAIRRFSSALCVSSSPSVTST--------DSVSLGH 49
           M+ +  K  SF  LNP +   +S   +R+FSS+       + ++T        +SVSLG 
Sbjct: 1   MDGMALKFPSFKFLNPNTSTIRSPPLLRKFSSSSSSLPVSASSTTLREAGPASNSVSLGQ 60

Query: 50  ITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKA 109
           +TRPDFPILHQ++     LVYLDNAATSQKPI+VLKALQ+YYE+YNSNVHRGIH+LSAKA
Sbjct: 61  LTRPDFPILHQKINNGSNLVYLDNAATSQKPISVLKALQDYYESYNSNVHRGIHYLSAKA 120

Query: 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHS 169
           T++YE AR+K+AAFINA +S EIVFT+NATEAINLVAY+WG +NLKSGDEV+LT+AEHHS
Sbjct: 121 TEKYEQAREKIAAFINAEESREIVFTRNATEAINLVAYTWGFANLKSGDEVLLTIAEHHS 180

Query: 170 AIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEE 229
           AIVPWQ VAQKTGA LKF+NLN+DE PD+ +LKEM+SRKTKLVV+HHISN LAS LPIE+
Sbjct: 181 AIVPWQFVAQKTGAVLKFVNLNEDEVPDVLQLKEMISRKTKLVVVHHISNTLASSLPIED 240

Query: 230 IVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSA 289
           IVHW+H V AKVLVDACQSVPHM VDV+ LDADFLVASSHKMCGPTG+GFL+GKSD+LS 
Sbjct: 241 IVHWAHAVEAKVLVDACQSVPHMPVDVRDLDADFLVASSHKMCGPTGVGFLYGKSDILST 300

Query: 290 MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYE 349
           MPPFLGGGEMISDVFLDHST+A+PPSRFEAGTPAIGEAIGLGAAIDYL  IGMQKIH YE
Sbjct: 301 MPPFLGGGEMISDVFLDHSTYAEPPSRFEAGTPAIGEAIGLGAAIDYLQGIGMQKIHEYE 360

Query: 350 VK 351
           ++
Sbjct: 361 ME 362

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444833|ref|XP_004140178.1| PREDICTED: cysteine desulfurase 2, chloroplastic-like [Cucumis sativus] gi|449481029|ref|XP_004156061.1| PREDICTED: cysteine desulfurase 2, chloroplastic-like [Cucumis sativus]

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 280/380 (73%), Positives = 307/380 (80%), Gaps = 36/380 (9%)

Query: 1   MEAVVPKLASFN------LLNPKSKSKSAIRRFSSALCVSSSP-------------SVTS 41
           ME +V K  SF+       +NP       I  FSS L  SSSP             SV++
Sbjct: 2   MEGMVLKSPSFHSQFHFQFMNPNR----CISCFSSTLRASSSPLLRFRNPRLPSHFSVSA 57

Query: 42  T------------DSVSLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQN 89
           +            +S+SLGH TRPDFPILHQEV GSK LVYLDNAATSQKPI+VL ALQN
Sbjct: 58  SASTAKETDSLHLNSLSLGHTTRPDFPILHQEVNGSK-LVYLDNAATSQKPISVLNALQN 116

Query: 90  YYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSW 149
           YY+AYNSNVHRGIHFLSAKATDEYE ARKKVA+FINA D+ EIVFT+NATEAINLVAYSW
Sbjct: 117 YYQAYNSNVHRGIHFLSAKATDEYERARKKVASFINAGDAKEIVFTRNATEAINLVAYSW 176

Query: 150 GLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKT 209
           GL+NLKSGDE+ILTVAEHHSAIVPWQLVA++TGA LKF+NL + + P+L  LKEM S KT
Sbjct: 177 GLANLKSGDEIILTVAEHHSAIVPWQLVAERTGAVLKFVNLGEHDVPNLKDLKEMFSTKT 236

Query: 210 KLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH 269
           KLVV HH+SN+LAS+LPI EIV  +H  GAKVLVDACQSVPHMVVDVQ LDADFLVASSH
Sbjct: 237 KLVVTHHVSNVLASVLPIGEIVGLAHRFGAKVLVDACQSVPHMVVDVQALDADFLVASSH 296

Query: 270 KMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIG 329
           KMCGPTGIGFL+GK DLLSAMPPFLGGGEMISDVFLDHSTFA PPSRFEAGTPAIGEAIG
Sbjct: 297 KMCGPTGIGFLYGKIDLLSAMPPFLGGGEMISDVFLDHSTFAQPPSRFEAGTPAIGEAIG 356

Query: 330 LGAAIDYLSTIGMQKIHAYE 349
           LGAAIDYLS IGMQKIH+YE
Sbjct: 357 LGAAIDYLSGIGMQKIHSYE 376

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22329419|ref|NP_172325.2| cysteine desulfurase 2 [Arabidopsis thaliana] gi|75249321|sp|Q93WX6.1|NFS2_ARATH RecName: Full=Cysteine desulfurase 2, chloroplastic; AltName: Full=NIFS-like protein; AltName: Full=Plastid sufS-like protein; AltName: Full=Protein AtCpNifS; AltName: Full=Selenocysteine lyase; Flags: Precursor gi|16152176|gb|AAL14994.1|AF419347_1 NIFS-like protein CpNifsp precursor [Arabidopsis thaliana] gi|20453112|gb|AAM19798.1| At1g08490/T27G7_14 [Arabidopsis thaliana] gi|23506185|gb|AAN31104.1| At1g08490/T27G7_14 [Arabidopsis thaliana] gi|27085243|gb|AAL79956.1| cysteine desulfurase [Arabidopsis thaliana] gi|332190177|gb|AEE28298.1| cysteine desulfurase 2 [Arabidopsis thaliana]

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 274/357 (76%), Positives = 305/357 (85%), Gaps = 7/357 (1%)

Query: 1   MEAVVPKLASF-NLLNPKSKSKSAIR-----RFSSALCVSSSPSVTSTDSVSLGHITRPD 54
           ME V  KL SF N ++   +S S +R        SA   SS+   T ++SVSLGH  R D
Sbjct: 1   MEGVAMKLPSFPNAISIGHRSFSRVRCSSSLSVCSAAAASSATISTDSESVSLGHRVRKD 60

Query: 55  FPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYE 114
           F ILHQEV GSK LVYLD+AATSQKP AVL ALQNYYE YNSNVHRGIH+LSAKATDE+E
Sbjct: 61  FRILHQEVNGSK-LVYLDSAATSQKPAAVLDALQNYYEFYNSNVHRGIHYLSAKATDEFE 119

Query: 115 LARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPW 174
           LARKKVA FINASDS EIVFT+NATEAINLVAYSWGLSNLK GDEVILTVAEHHS IVPW
Sbjct: 120 LARKKVARFINASDSREIVFTRNATEAINLVAYSWGLSNLKPGDEVILTVAEHHSCIVPW 179

Query: 175 QLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWS 234
           Q+V+QKTGA LKF+ LN+DE PD++KL+E++S KTKLV +HH+SN+LAS LPIEEIV W+
Sbjct: 180 QIVSQKTGAVLKFVTLNEDEVPDINKLRELISPKTKLVAVHHVSNVLASSLPIEEIVVWA 239

Query: 235 HDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFL 294
           HDVGAKVLVDACQSVPHMVVDVQ L+ADFLVASSHKMCGPTGIGFL+GKSDLL +MPPFL
Sbjct: 240 HDVGAKVLVDACQSVPHMVVDVQKLNADFLVASSHKMCGPTGIGFLYGKSDLLHSMPPFL 299

Query: 295 GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVK 351
           GGGEMISDVFLDHST+A+PPSRFEAGTPAIGEAI LGAA+DYLS IGM KIH YEV+
Sbjct: 300 GGGEMISDVFLDHSTYAEPPSRFEAGTPAIGEAIALGAAVDYLSGIGMPKIHEYEVE 356

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849158|ref|XP_002892460.1| hypothetical protein ARALYDRAFT_470910 [Arabidopsis lyrata subsp. lyrata] gi|297338302|gb|EFH68719.1| hypothetical protein ARALYDRAFT_470910 [Arabidopsis lyrata subsp. lyrata]

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 272/360 (75%), Positives = 301/360 (83%), Gaps = 10/360 (2%)

Query: 1   MEAVVPKLASFNLLNPKSKS---------KSAIRRFSSALCVSSSPSVTSTDSVSLGHIT 51
           ME V  KL SF  L P + S         + +      +   SS+   T ++SVSLGH  
Sbjct: 1   MEGVAMKLPSFKSLAPNAISIGHRSFSRVRRSSSLSVCSAASSSATISTDSESVSLGHRV 60

Query: 52  RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
           R DF ILHQ V GSK LVYLD+AATSQKP AVL ALQNYYE YNSNVHRGIH+LSAKATD
Sbjct: 61  RNDFRILHQVVNGSK-LVYLDSAATSQKPAAVLDALQNYYEFYNSNVHRGIHYLSAKATD 119

Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
           E+ELARKKVA FINASDS EIVFT+NATEAINLVAYSWGLSNLK GDEVILTVAEHHS I
Sbjct: 120 EFELARKKVARFINASDSREIVFTRNATEAINLVAYSWGLSNLKPGDEVILTVAEHHSCI 179

Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
           VPWQ+V+QKTGA LKF+ LNDDE PD++KL+EM+S KTKLV +HH+SN+LAS LPIEEIV
Sbjct: 180 VPWQIVSQKTGAVLKFVTLNDDEVPDIEKLREMISPKTKLVAVHHVSNVLASSLPIEEIV 239

Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
            W+HDVGAKVLVDACQSVPHMVVDVQ L+ADFLVASSHKMCGPTGIGFL+GKSDLL +MP
Sbjct: 240 VWAHDVGAKVLVDACQSVPHMVVDVQKLNADFLVASSHKMCGPTGIGFLYGKSDLLHSMP 299

Query: 292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVK 351
           PFLGGGEMISDVFLDHST+A+PPSRFEAGTPAIGEAI LGAA+DYLS IGM KIH YEV+
Sbjct: 300 PFLGGGEMISDVFLDHSTYAEPPSRFEAGTPAIGEAIALGAAVDYLSGIGMPKIHEYEVE 359

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6664318|gb|AAF22900.1|AC006932_17 T27G7.17 [Arabidopsis thaliana]

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 277/380 (72%), Positives = 308/380 (81%), Gaps = 23/380 (6%)

Query: 1   MEAVVPKLASF-NLLNPKSKSKSAIR-----RFSSALCVSSSPSVTSTDSVSLGHITRPD 54
           ME V  KL SF N ++   +S S +R        SA   SS+   T ++SVSLGH  R D
Sbjct: 1   MEGVAMKLPSFPNAISIGHRSFSRVRCSSSLSVCSAAAASSATISTDSESVSLGHRVRKD 60

Query: 55  FPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYE 114
           F ILHQEV GSK LVYLD+AATSQKP AVL ALQNYYE YNSNVHRGIH+LSAKATDE+E
Sbjct: 61  FRILHQEVNGSK-LVYLDSAATSQKPAAVLDALQNYYEFYNSNVHRGIHYLSAKATDEFE 119

Query: 115 LARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPW 174
           LARKKVA FINASDS EIVFT+NATEAINLVAYSWGLSNLK GDEVILTVAEHHS IVPW
Sbjct: 120 LARKKVARFINASDSREIVFTRNATEAINLVAYSWGLSNLKPGDEVILTVAEHHSCIVPW 179

Query: 175 QLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNM------------LA 222
           Q+V+QKTGA LKF+ LN+DE PD++KL+E++S KTKLV +HH+SN+            LA
Sbjct: 180 QIVSQKTGAVLKFVTLNEDEVPDINKLRELISPKTKLVAVHHVSNVLEGKYLTYVSFCLA 239

Query: 223 SILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK---MCGPTGIGF 279
           S LPIEEIV W+HDVGAKVLVDACQSVPHMVVDVQ L+ADFLVASSHK   MCGPTGIGF
Sbjct: 240 SSLPIEEIVVWAHDVGAKVLVDACQSVPHMVVDVQKLNADFLVASSHKVGIMCGPTGIGF 299

Query: 280 LFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST 339
           L+GKSDLL +MPPFLGGGEMISDVFLDHST+A+PPSRFEAGTPAIGEAI LGAA+DYLS 
Sbjct: 300 LYGKSDLLHSMPPFLGGGEMISDVFLDHSTYAEPPSRFEAGTPAIGEAIALGAAVDYLSG 359

Query: 340 IGMQKIHAYEVKWIICSIIV 359
           IGM KIH YE+  I C I V
Sbjct: 360 IGMPKIHEYEI-LISCVIQV 378

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116789873|gb|ABK25420.1| unknown [Picea sitchensis]

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 250/335 (74%), Positives = 290/335 (86%), Gaps = 4/335 (1%)

Query: 18  SKSKSAIRRFSSALCVSSSPSVTST-DSVSLGHITRPDFPILHQEVYGSKKLVYLDNAAT 76
           S+ K  + R  SA  VS+  +V +  ++ SLG IT+PDFPIL QEV GS+ LVYLDNAAT
Sbjct: 47  SRQKRGVGRAMSA--VSTPLNVNANPETASLGEITKPDFPILKQEVNGSR-LVYLDNAAT 103

Query: 77  SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTK 136
           SQKP  V+ A++ YYEAYN+NVHRGIHFLSAKATDEYELARKKVA FINA  S EIVFT+
Sbjct: 104 SQKPQFVIDAVREYYEAYNANVHRGIHFLSAKATDEYELARKKVADFINAGGSREIVFTR 163

Query: 137 NATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESP 196
           NATEAINLVAYSWGL+NLK+GDE+IL++AEHHS IVPWQ+VAQKTGA LKF+NLN+ E P
Sbjct: 164 NATEAINLVAYSWGLTNLKAGDEIILSIAEHHSVIVPWQIVAQKTGAVLKFVNLNEREVP 223

Query: 197 DLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDV 256
           DL++LK++L  KTKLV IHH+SN L  ILPI+EIVHW+   GA+VLVDACQSVPHM VDV
Sbjct: 224 DLEQLKQLLCEKTKLVAIHHVSNTLGCILPIQEIVHWTQKYGARVLVDACQSVPHMSVDV 283

Query: 257 QGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSR 316
           Q L  DFLVASSHKMCGPTGIGFL+GKS+LL++MPPFLGGGEMI+DVFLDHST+A+PPSR
Sbjct: 284 QQLGVDFLVASSHKMCGPTGIGFLYGKSELLTSMPPFLGGGEMIADVFLDHSTYAEPPSR 343

Query: 317 FEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVK 351
           FEAGTPAIGEAIGLGAAIDYLS IGMQ+IH YE++
Sbjct: 344 FEAGTPAIGEAIGLGAAIDYLSGIGMQRIHEYELE 378

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462739|ref|XP_003601651.1| Cysteine desulfurase [Medicago truncatula] gi|355490699|gb|AES71902.1| Cysteine desulfurase [Medicago truncatula]

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 241/325 (74%), Positives = 274/325 (84%), Gaps = 10/325 (3%)

Query: 1   MEAVVPKLASFNLLNP-----KSKSKSAIRRFS----SALCVSSSPSVTSTDSVSLGHIT 51
           ME ++PKL S +          S+ ++  RR S     A  V+   +  +  S SLGH T
Sbjct: 1   MEVLLPKLPSPSYCRSITTRTTSRVRAGFRRLSYLHVRASTVNQEVAEPTLSSPSLGHTT 60

Query: 52  RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
           RP FPILHQEV GSK LVY+DNAATSQKP AV+KALQ+YYE YNSNVHRGIH+LSAKATD
Sbjct: 61  RPHFPILHQEVNGSK-LVYIDNAATSQKPAAVVKALQDYYEGYNSNVHRGIHYLSAKATD 119

Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
           EYE AR+KVAAFINASDS EIVFT+NATEAINLVAYSWGLSNLK GDE++LTVAEHHSAI
Sbjct: 120 EYESARRKVAAFINASDSREIVFTRNATEAINLVAYSWGLSNLKQGDEIVLTVAEHHSAI 179

Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
           VPWQLVAQK GA LKF+NLN DE PD+DKLKE+LS+KTK+V +HH+SN+LAS+LPI +I 
Sbjct: 180 VPWQLVAQKVGAVLKFVNLNQDEIPDIDKLKEVLSKKTKIVAVHHVSNVLASVLPIRDIA 239

Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
           HW+H VGAKVLVDACQSVPHMVVDVQ LDADFLVASSHKMCGPTGIGFL+GK DLLS+MP
Sbjct: 240 HWAHGVGAKVLVDACQSVPHMVVDVQNLDADFLVASSHKMCGPTGIGFLYGKMDLLSSMP 299

Query: 292 PFLGGGEMISDVFLDHSTFADPPSR 316
           PFLGGGEMISDV+LDHST+A+PPSR
Sbjct: 300 PFLGGGEMISDVYLDHSTYAEPPSR 324

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	368
TAIR|locus:2201856	463	CPNIFS "chloroplastic NIFS-lik	0.951	0.755	0.717	5.7e-130
TIGR_CMR|BA_5215	406	BA_5215 "cysteine desulfurase	0.815	0.738	0.511	3.4e-77
UNIPROTKB|Q9EXP2	412	sufS "Cysteine desulfurase" [D	0.807	0.720	0.481	2.9e-71
TIGR_CMR|CBU_1357	405	CBU_1357 "selenocysteine lyase	0.820	0.745	0.460	2.9e-71
UNIPROTKB|P77444	406	sufS [Escherichia coli K-12 (t	0.807	0.731	0.468	5.6e-68
UNIPROTKB|P63516	417	csd "Probable cysteine desulfu	0.823	0.726	0.448	1.1e-66
UNIPROTKB|Q9KPQ7	404	csd "Probable cysteine desulfu	0.804	0.732	0.437	5.8e-66
TIGR_CMR|VC_2309	404	VC_2309 "aminotransferase, cla	0.804	0.732	0.437	5.8e-66
TIGR_CMR|SPO_2014	406	SPO_2014 "cysteine desulfurase	0.804	0.729	0.428	1.2e-63
TIGR_CMR|CPS_2211	569	CPS_2211 "putative selenocyste	0.744	0.481	0.464	1e-61

TAIR|locus:2201856 CPNIFS "chloroplastic NIFS-like cysteine desulfurase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1275 (453.9 bits), Expect = 5.7e-130, P = 5.7e-130
 Identities = 256/357 (71%), Positives = 283/357 (79%)

Query:     1 MEAVVPKLASF-NLLNPKSKSKSAIR-----RFXXXXXXXXXXXXXXXXXXXLGHITRPD 54
             ME V  KL SF N ++   +S S +R                          LGH  R D
Sbjct:     1 MEGVAMKLPSFPNAISIGHRSFSRVRCSSSLSVCSAAAASSATISTDSESVSLGHRVRKD 60

Query:    55 FPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYE 114
             F ILHQEV GSK LVYLD+AATSQKP AVL ALQNYYE YNSNVHRGIH+LSAKATDE+E
Sbjct:    61 FRILHQEVNGSK-LVYLDSAATSQKPAAVLDALQNYYEFYNSNVHRGIHYLSAKATDEFE 119

Query:   115 LARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPW 174
             LARKKVA FINASDS EIVFT+NATEAINLVAYSWGLSNLK GDEVILTVAEHHS IVPW
Sbjct:   120 LARKKVARFINASDSREIVFTRNATEAINLVAYSWGLSNLKPGDEVILTVAEHHSCIVPW 179

Query:   175 QLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWS 234
             Q+V+QKTGA LKF+ LN+DE PD++KL+E++S KTKLV +HH+SN+LAS LPIEEIV W+
Sbjct:   180 QIVSQKTGAVLKFVTLNEDEVPDINKLRELISPKTKLVAVHHVSNVLASSLPIEEIVVWA 239

Query:   235 HDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFL 294
             HDVGAKVLVDACQSVPHMVVDVQ L+ADFLVASSHKMCGPTGIGFL+GKSDLL +MPPFL
Sbjct:   240 HDVGAKVLVDACQSVPHMVVDVQKLNADFLVASSHKMCGPTGIGFLYGKSDLLHSMPPFL 299

Query:   295 GGGEMISDVFLDHSTFADPPSRFEAGTPXXXXXXXXXXXXDYLSTIGMQKIHAYEVK 351
             GGGEMISDVFLDHST+A+PPSRFEAGTP            DYLS IGM KIH YEV+
Sbjct:   300 GGGEMISDVFLDHSTYAEPPSRFEAGTPAIGEAIALGAAVDYLSGIGMPKIHEYEVE 356

GO:0003824 "catalytic activity" evidence=IEA

GO:0006534 "cysteine metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=ISS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0031071 "cysteine desulfurase activity" evidence=IEA;IDA

GO:0001887 "selenium compound metabolic process" evidence=IDA

GO:0006790 "sulfur compound metabolic process" evidence=IDA

GO:0009000 "selenocysteine lyase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0018283 "iron incorporation into metallo-sulfur cluster" evidence=IDA

GO:0010269 "response to selenium ion" evidence=IMP

GO:0000302 "response to reactive oxygen species" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0010039 "response to iron ion" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0055072 "iron ion homeostasis" evidence=RCA

TIGR_CMR|BA_5215 BA_5215 "cysteine desulfurase SufS" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
 Identities = 154/301 (51%), Positives = 203/301 (67%)

Query:    49 HITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAK 108
             H  R  FPIL Q+V G K+LVY D+AATSQKPI V++ L+ YY+ YNSNVHRG+H L  K
Sbjct:     4 HEIRKQFPILDQKVNG-KQLVYFDSAATSQKPIQVIETLERYYKEYNSNVHRGVHTLGTK 62

Query:   109 ATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHH 168
             ATD YE AR+KV  FINA    EI+FT   T A+N VA S+GL N+K GDE++++  EHH
Sbjct:    63 ATDAYEGAREKVRKFINAKSMEEIIFTCGTTTALNTVAASYGLENVKEGDEIVISYMEHH 122

Query:   169 SAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIE 228
             S I+PWQ VA+KTGA LK+L L  D +  ++  ++ ++  TK+V I ++SN+L +I P++
Sbjct:   123 SNIIPWQQVAKKTGATLKYLPLQPDGTISIEDARQTITPNTKIVSIMYVSNVLGTINPVK 182

Query:   229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLS 288
             EI   +H+ GA ++VD  QS PHM VDVQ L+ DF   S+HKMCGPTGIG L+GK +LL+
Sbjct:   183 EIGAIAHENGAIMVVDGAQSTPHMKVDVQDLNCDFYALSAHKMCGPTGIGVLYGKKELLN 242

Query:   289 AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPXXXXXXXXXXXXDYLSTIGMQKIHAY 348
              M P   GGEMI  V L  ST+ + P +FEAGTP            D+L  IG+  I  +
Sbjct:   243 NMEPIEFGGEMIDFVDLQESTWKELPWKFEAGTPIIGNAIGLGAAIDFLEEIGLDNIEKH 302

Query:   349 E 349
             E
Sbjct:   303 E 303

GO:0004123 "cystathionine gamma-lyase activity" evidence=ISS

GO:0016226 "iron-sulfur cluster assembly" evidence=ISS

UNIPROTKB|Q9EXP2 sufS "Cysteine desulfurase" [Dickeya dadantii 3937 (taxid:198628)]

 Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
 Identities = 144/299 (48%), Positives = 199/299 (66%)

Query:    52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
             R DFPIL Q V G + L YLD+AA++QKP+AV+   +++Y    + VHRGIH LSA+AT 
Sbjct:    14 RADFPILQQSVNG-QPLAYLDSAASAQKPLAVIDRERDFYLHEYAAVHRGIHTLSARATS 72

Query:   112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
               E  R KVA FI+A+ + +IVF +  TEAINLVA S+G +  + GD ++++  EHH+ I
Sbjct:    73 AMEEVRAKVATFIHAASAEDIVFVRGTTEAINLVANSYGRTAFQPGDNLVISEMEHHANI 132

Query:   172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
             VPWQ++AQ  G  L+ L + DD   D+ +L  +L  +T+LV +  +SN+L ++ P+ EI+
Sbjct:   133 VPWQMLAQARGLTLRVLPITDDGELDMAQLPALLDERTRLVAVTQVSNVLGTVNPLAEII 192

Query:   232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
               +H  GAKVLVD  Q+V H  VDVQ LD DF   S HK+ GP+GIG L+GKS+LL AMP
Sbjct:   193 RQAHACGAKVLVDGAQAVMHQAVDVQALDCDFYAFSGHKLYGPSGIGVLYGKSELLQAMP 252

Query:   292 PFLGGGEMISDVFLDH-STFADPPSRFEAGTPXXXXXXXXXXXXDYLSTIGMQKIHAYE 349
             P+ GGG MI +V L   +T+ADPP RFEAG+P            DY+S +G+  I A+E
Sbjct:   253 PWEGGGAMIREVSLTQGTTYADPPWRFEAGSPHVAGIIGLGAALDYVSALGVDAIQAHE 311

GO:0005515 "protein binding" evidence=IPI

TIGR_CMR|CBU_1357 CBU_1357 "selenocysteine lyase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
 Identities = 140/304 (46%), Positives = 206/304 (67%)

Query:    52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
             R DFP+L Q ++G K LVYLD  AT+QKP AV+ A+ +YY   N+NVHRGI+ LS +AT 
Sbjct:     8 RDDFPLLKQLIHG-KPLVYLDTGATAQKPQAVMDAVSHYYCQDNANVHRGIYELSERATR 66

Query:   112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
              YE +R+K+  FINA+D+ EI+FT  AT +INLVA S+G   +K GDE++++  EHHS I
Sbjct:    67 NYEESREKIKTFINAADAREIIFTHGATGSINLVAASFGALQVKRGDEILISAMEHHSNI 126

Query:   172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
             VPWQL+ ++  A LK + ++D+   D+D  + +L+++TKLV + HISN+L ++ P+++++
Sbjct:   127 VPWQLLCERVNAKLKVIPVDDNGVLDIDAYQRLLTKRTKLVGLIHISNVLGTVNPVKDMI 186

Query:   232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
               +H     VL+D  Q++ H  VDVQ LD DF V SSHK+ GPTG+G L+GK+  L  MP
Sbjct:   187 QLAHQNKTPVLLDGAQAISHREVDVQDLDCDFYVFSSHKLYGPTGVGVLYGKAKWLETMP 246

Query:   292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPXXXXXXXXXXXXDYLSTIGMQKIHAYEVK 351
             P+ GGG+MIS V  + + +   P +FEAGTP            DY++ IG +KI  +E +
Sbjct:   247 PYQGGGDMISRVSFEKTDYNVVPYKFEAGTPNMGGVIGMGAAIDYVTRIGFEKIKLHENE 306

Query:   352 WIIC 355
              ++C
Sbjct:   307 -LMC 309

GO:0009000 "selenocysteine lyase activity" evidence=ISS

GO:0016261 "selenocysteine catabolic process" evidence=ISS

UNIPROTKB|P77444 sufS [Escherichia coli K-12 (taxid:83333)]

 Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
 Identities = 140/299 (46%), Positives = 191/299 (63%)

Query:    52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
             R DFP+L +EV G   L YLD+AA++QKP  V+ A   +Y    + VHRGIH LSA+AT+
Sbjct:     9 RADFPVLSREVNGLP-LAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATE 67

Query:   112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
             + E  RK+ + FINA  + E+VF +  TE INLVA SWG SN+++GD +I++  EHH+ I
Sbjct:    68 KMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANI 127

Query:   172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
             VPWQ++  + GA L+ + LN D +  L+ L  +   KT+L+ I H+SN+L +  P+ E++
Sbjct:   128 VPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMI 187

Query:   232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
               +H  GAKVLVD  Q+V H  VDVQ LD DF V S HK+ GPTGIG L+ K  LL  MP
Sbjct:   188 TLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMP 247

Query:   292 PFLGGGEMISDVFLDH-STFADPPSRFEAGTPXXXXXXXXXXXXDYLSTIGMQKIHAYE 349
             P+ GGG MI+ V L   +T+   P RFEAGTP            +Y+S +G+  I  YE
Sbjct:   248 PWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYE 306

GO:0009000 "selenocysteine lyase activity" evidence=IEA;IDA;NAS

GO:0006534 "cysteine metabolic process" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IGI;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0001887 "selenium compound metabolic process" evidence=IGI

GO:0030170 "pyridoxal phosphate binding" evidence=IEA;IDA

GO:0031071 "cysteine desulfurase activity" evidence=IEA;IDA

GO:0016829 "lyase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0006790 "sulfur compound metabolic process" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|P63516 csd "Probable cysteine desulfurase" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
 Identities = 139/310 (44%), Positives = 188/310 (60%)

Query:    52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
             R DFPIL + + G   L YLD+ ATSQ+P+ VL A + +  A N  VHRG H L  +ATD
Sbjct:    14 RADFPILKRIMRGGNPLAYLDSGATSQRPLQVLDAEREFLTASNGAVHRGAHQLMEEATD 73

Query:   112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKS----GDEVILTVAEH 167
              YE  R  +A F+ A D+ E+VFTKNATEA+NLV+Y  G S  +     GD ++ T  EH
Sbjct:    74 AYEQGRADIALFVGA-DTDELVFTKNATEALNLVSYVLGDSRFERAVGPGDVIVTTELEH 132

Query:   168 HSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPI 227
             H+ ++PWQ +A++TGA L++  + DD   DLD L   L  + K+V   H SN+   + P+
Sbjct:   133 HANLIPWQELARRTGATLRWYGVTDDGRIDLDSL--YLDDRVKVVAFTHHSNVTGVLTPV 190

Query:   228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLL 287
              E+V  +H  GA  ++DACQSVPH  VD+  L  DF   S HKM GP GIG L+G+ +LL
Sbjct:   191 SELVSRAHQSGALTVLDACQSVPHQPVDLHELGVDFAAFSGHKMLGPNGIGVLYGRRELL 250

Query:   288 SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPXXXXXXXXXXXXDYLSTIGMQKIHA 347
             + MPPFL GG MI  V ++ +T+A  P RFEAGTP             YL  IGM  + A
Sbjct:   251 AQMPPFLTGGSMIETVTMEGATYAPAPQRFEAGTPMTSQVVGLAAAARYLGAIGMAAVEA 310

Query:   348 YEVKWIICSI 357
             +E + +  +I
Sbjct:   311 HERELVAAAI 320

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IMP

UNIPROTKB|Q9KPQ7 csd "Probable cysteine desulfurase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
 Identities = 130/297 (43%), Positives = 192/297 (64%)

Query:    52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
             R  FP L Q V G+  LVYLD+AAT+QKP  V+ A+ +YY  +N+NVHRG H L+A+AT 
Sbjct:     9 RAQFPALQQIVNGNP-LVYLDSAATTQKPQCVIDAISHYYSQHNANVHRGSHSLTAQATS 67

Query:   112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
             ++E AR++VA FI A  S  I++T+ ATEA+NL+A S+  S L++GDE++++  EHH+ I
Sbjct:    68 QFEGAREQVAQFIGAPSSKNIIWTRGATEALNLIAQSYARSTLQAGDEILVSETEHHANI 127

Query:   172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
             VPWQ+VA++TGA +  + +       L   +++LS + K+V + HI+N+  +  PIE ++
Sbjct:   128 VPWQMVAEQTGAKVVKIPMTTTGEFGLAAFRQLLSPRCKIVALAHITNVTGTRQPIEAVI 187

Query:   232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
               +H  GA V++D  Q + H  VDV+ LDADF V S HK+  P GIG L+GK+ LL AMP
Sbjct:   188 QAAHQQGAIVVIDGAQGIVHETVDVRALDADFYVFSGHKLYAPAGIGVLYGKTALLEAMP 247

Query:   292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPXXXXXXXXXXXXDYLSTIGMQKIHAY 348
             P+ GGG+M+  V  D +TF   P +FEAGTP            D+  ++    + A+
Sbjct:   248 PWHGGGKMVEKVSFDGTTFTGLPGKFEAGTPNVAGAIALATAIDWYQSLDRAAVEAH 304

GO:0008150 "biological_process" evidence=ND

GO:0008483 "transaminase activity" evidence=ISS

TIGR_CMR|VC_2309 VC_2309 "aminotransferase, class V" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
 Identities = 130/297 (43%), Positives = 192/297 (64%)

Query:    52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
             R  FP L Q V G+  LVYLD+AAT+QKP  V+ A+ +YY  +N+NVHRG H L+A+AT 
Sbjct:     9 RAQFPALQQIVNGNP-LVYLDSAATTQKPQCVIDAISHYYSQHNANVHRGSHSLTAQATS 67

Query:   112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
             ++E AR++VA FI A  S  I++T+ ATEA+NL+A S+  S L++GDE++++  EHH+ I
Sbjct:    68 QFEGAREQVAQFIGAPSSKNIIWTRGATEALNLIAQSYARSTLQAGDEILVSETEHHANI 127

Query:   172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
             VPWQ+VA++TGA +  + +       L   +++LS + K+V + HI+N+  +  PIE ++
Sbjct:   128 VPWQMVAEQTGAKVVKIPMTTTGEFGLAAFRQLLSPRCKIVALAHITNVTGTRQPIEAVI 187

Query:   232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
               +H  GA V++D  Q + H  VDV+ LDADF V S HK+  P GIG L+GK+ LL AMP
Sbjct:   188 QAAHQQGAIVVIDGAQGIVHETVDVRALDADFYVFSGHKLYAPAGIGVLYGKTALLEAMP 247

Query:   292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPXXXXXXXXXXXXDYLSTIGMQKIHAY 348
             P+ GGG+M+  V  D +TF   P +FEAGTP            D+  ++    + A+
Sbjct:   248 PWHGGGKMVEKVSFDGTTFTGLPGKFEAGTPNVAGAIALATAIDWYQSLDRAAVEAH 304

GO:0008150 "biological_process" evidence=ND

GO:0008483 "transaminase activity" evidence=ISS

TIGR_CMR|SPO_2014 SPO_2014 "cysteine desulfurase SufS" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
 Identities = 128/299 (42%), Positives = 185/299 (61%)

Query:    52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKAL-QNYYEAYNSNVHRGIHFLSAKAT 110
             R +FPIL ++V G K L YLDN A++QKP AV+ A+ + Y E Y +NVHRG+HFLS  AT
Sbjct:     8 RAEFPILSRQVNG-KPLTYLDNGASAQKPQAVIDAVTRGYAEEY-ANVHRGLHFLSNLAT 65

Query:   111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSA 170
             ++YE  R  VA F+NA    EIV     TE IN+VAY W +  +++GDE++L+  EHH+ 
Sbjct:    66 EKYEAVRGIVARFLNAGSEDEIVLNSGTTEGINMVAYGWAMPQMQAGDEIVLSTMEHHAN 125

Query:   171 IVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEI 230
             IVPW  + ++ G  LK+++   D S D   + + +  +TKLV I H SN+L +++ ++ I
Sbjct:   126 IVPWHFLRERQGVVLKWVDPEPDGSLDPQAVLDAIGPRTKLVAITHCSNVLGTVVDVKSI 185

Query:   231 VHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAM 290
                +   G  VLVD  Q   HM VDVQ L  DF   + HK+ GP+G G ++ +++ L+ M
Sbjct:   186 CAGARAKGVPVLVDGSQGAVHMPVDVQDLGCDFYAITGHKLYGPSGSGAIYARAERLAEM 245

Query:   291 PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPXXXXXXXXXXXXDYLSTIGMQKIHAYE 349
              PF+GGG+MI +V  D   + DPP +FEAGTP            DY+  +GM+ I A+E
Sbjct:   246 RPFMGGGDMIKEVTKDTVIYNDPPMKFEAGTPGIVQTIGMGVALDYMMALGMENIAAHE 304

GO:0016226 "iron-sulfur cluster assembly" evidence=ISS

GO:0031071 "cysteine desulfurase activity" evidence=ISS

TIGR_CMR|CPS_2211 CPS_2211 "putative selenocysteine lyase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 131/282 (46%), Positives = 180/282 (63%)

Query:    49 HITRPDFPIL--HQEVYGSK-----KLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRG 101
             H+ R  FP++  H +    K      L+Y DNAAT+QKP  V+   Q+YY  +N+NVHR 
Sbjct:     7 HLFRQQFPLIESHDQSLIEKDDLMPSLIYFDNAATTQKPRQVIDCQQHYYRNFNANVHRA 66

Query:   102 IHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVI 161
              H LS+KAT  +E AR  V  FI A    E+++TK ATE+IN+V  S   + L  GDE+ 
Sbjct:    67 SHQLSSKATFAFEKARSLVQGFIGAKSVKEVIWTKGATESINVVVQSLARNILIPGDEIA 126

Query:   162 LTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNML 221
             + V+EHH+ IVPWQ+VA++TGA +K + + +    D+D++  ++S KTK V   HISN+L
Sbjct:   127 ICVSEHHANIVPWQIVAEQTGAVIKVIPITESGYIDVDEIDNIISDKTKFVACAHISNVL 186

Query:   222 ASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLF 281
               I PIE+++  +  VGA  ++D  Q+V H  V+VQ LD DF V S+HKM GPTGIG L+
Sbjct:   187 GRINPIEQVIVKAKSVGAITVIDGTQAVAHFSVNVQSLDCDFYVFSAHKMYGPTGIGVLY 246

Query:   282 GKSDLLSAMPPFLGGGEMISDV-FLDHSTFADPPSRFEAGTP 322
             GK   L +M P+ GGGEMI  V F   +TF   P +FEAGTP
Sbjct:   247 GKKKHLESMAPYQGGGEMIKTVSFTQGTTFNSLPFKFEAGTP 288

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

GO:0009000 "selenocysteine lyase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6GIH2	CSD_STAAR	2, ., 8, ., 1, ., 7	0.5016	0.8206	0.7312	yes	no
Q93WX6	NFS2_ARATH	4, ., 4, ., 1, ., 1, 6	0.7675	0.9510	0.7559	yes	no
Q9HMM6	CSD_HALSA	2, ., 8, ., 1, ., 7	0.5268	0.8097	0.7180	yes	no
A4W9R3	SUFS_ENT38	4, ., 4, ., 1, ., 1, 6	0.5083	0.8070	0.7315	yes	no
O32164	CSD_BACSU	2, ., 8, ., 1, ., 7	0.5366	0.8125	0.7364	yes	no
A7MF59	SUFS_CROS8	4, ., 4, ., 1, ., 1, 6	0.5081	0.8260	0.7487	yes	no
Q9XAD5	CSD_STRCO	2, ., 8, ., 1, ., 7	0.5496	0.8097	0.7129	yes	no
Q6GB11	CSD_STAAS	2, ., 8, ., 1, ., 7	0.5016	0.8206	0.7312	yes	no
Q8CTA4	CSD_STAES	2, ., 8, ., 1, ., 7	0.5033	0.8016	0.7142	yes	no
Q8NXH0	CSD_STAAW	2, ., 8, ., 1, ., 7	0.5016	0.8206	0.7312	yes	no
Q9EXP2	SUFS_DICD3	4, ., 4, ., 1, ., 1, 6	0.5016	0.8070	0.7208	yes	no
P99177	CSD_STAAN	2, ., 8, ., 1, ., 7	0.5016	0.8206	0.7312	yes	no
P63518	CSD_STAAM	2, ., 8, ., 1, ., 7	0.5016	0.8206	0.7312	yes	no
Q5HHH0	CSD_STAAC	2, ., 8, ., 1, ., 7	0.5016	0.8206	0.7312	yes	no
Q9K7A0	CSD_BACHD	2, ., 8, ., 1, ., 7	0.5415	0.8152	0.7389	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	4.4.1.16	0.946
4th Layer	2.8.1.7	0.946
3rd Layer	2.8.1	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	368
PLN02855	424	PLN02855, PLN02855, Bifunctional selenocysteine ly	0.0
TIGR01979	403	TIGR01979, sufS, cysteine desulfurases, SufSfamily	1e-169
cd06453	373	cd06453, SufS_like, Cysteine desulfurase (SufS)-li	1e-164
pfam00266	370	pfam00266, Aminotran_5, Aminotransferase class-V	1e-135
COG0520	405	COG0520, csdA, Selenocysteine lyase/Cysteine desul	1e-132
PRK09295	406	PRK09295, PRK09295, bifunctional cysteine desulfur	1e-120
PRK10874	401	PRK10874, PRK10874, cysteine sulfinate desulfinase	7e-97
TIGR03392	398	TIGR03392, FeS_syn_CsdA, cysteine desulfurase, cat	4e-91
TIGR01976	397	TIGR01976, am_tr_V_VC1184, cysteine desulfurase fa	6e-54
TIGR01977	376	TIGR01977, am_tr_V_EF2568, cysteine desulfurase fa	9e-52
COG1104	386	COG1104, NifS, Cysteine sulfinate desulfinase/cyst	1e-39
TIGR03402	379	TIGR03402, FeS_nifS, cysteine desulfurase NifS	1e-32
TIGR03235	353	TIGR03235, DNA_S_dndA, cysteine desulfurase DndA	4e-26
PRK14012	404	PRK14012, PRK14012, cysteine desulfurase; Provisio	7e-26
TIGR02006	402	TIGR02006, IscS, cysteine desulfurase IscS	2e-25
TIGR03403	382	TIGR03403, nifS_epsilon, cysteine desulfurase, Nif	3e-24
PLN02651	364	PLN02651, PLN02651, cysteine desulfurase	4e-24
PRK02948	381	PRK02948, PRK02948, cysteine desulfurase; Provisio	2e-15
cd01494	170	cd01494, AAT_I, Aspartate aminotransferase (AAT) s	9e-15
TIGR04343	370	TIGR04343, egtE_PLP_lyase, ergothioneine biosynthe	5e-14
TIGR03301	355	TIGR03301, PhnW-AepZ, 2-aminoethylphosphonate amin	2e-10
COG3844	407	COG3844, COG3844, Kynureninase [Amino acid transpo	2e-08
PRK07324	373	PRK07324, PRK07324, transaminase; Validated	2e-08
PRK09331	387	PRK09331, PRK09331, Sep-tRNA:Cys-tRNA synthetase;	1e-07
PRK13479	368	PRK13479, PRK13479, 2-aminoethylphosphonate--pyruv	2e-07
PLN02724	805	PLN02724, PLN02724, Molybdenum cofactor sulfurase	3e-07
cd06452	361	cd06452, SepCysS, Sep-tRNA:Cys-tRNA synthase	4e-06
TIGR02326	363	TIGR02326, transamin_PhnW, 2-aminoethylphosphonate	6e-06
PRK08045	386	PRK08045, PRK08045, cystathionine gamma-synthase;	8e-06
COG0075	383	COG0075, COG0075, Serine-pyruvate aminotransferase	1e-05
TIGR02539	370	TIGR02539, SepCysS, O-phospho-L-seryl-tRNA:Cys-tRN	3e-05
COG1103	382	COG1103, COG1103, Archaea-specific pyridoxal phosp	4e-05
pfam01053	382	pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP	4e-05
PRK06836	394	PRK06836, PRK06836, aspartate aminotransferase; Pr	6e-05
cd00614	369	cd00614, CGS_like, CGS_like: Cystathionine gamma-s	7e-05
PRK08861	388	PRK08861, PRK08861, cystathionine gamma-synthase;	8e-05
cd00609	350	cd00609, AAT_like, Aspartate aminotransferase fami	2e-04
COG0399	374	COG0399, WecE, Predicted pyridoxal phosphate-depen	3e-04
COG0626	396	COG0626, MetC, Cystathionine beta-lyases/cystathio	4e-04
TIGR02080	382	TIGR02080, O_succ_thio_ly, O-succinylhomoserine (t	4e-04
TIGR03947	359	TIGR03947, viomycin_VioD, capreomycidine synthase	5e-04
TIGR01325	381	TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sul	5e-04
TIGR01328	391	TIGR01328, met_gam_lyase, methionine gamma-lyase	6e-04
TIGR01329	378	TIGR01329, cysta_beta_ly_E, cystathionine beta-lya	7e-04
COG0079	356	COG0079, HisC, Histidinol-phosphate/aromatic amino	8e-04
COG0436	393	COG0436, COG0436, Aspartate/tyrosine/aromatic amin	0.001
cd00616	352	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid s	0.002
PRK08574	385	PRK08574, PRK08574, cystathionine gamma-synthase;	0.002
PRK08248	431	PRK08248, PRK08248, O-acetylhomoserine aminocarbox	0.003
PLN02242	418	PLN02242, PLN02242, methionine gamma-lyase	0.003
cd06451	356	cd06451, AGAT_like, Alanine-glyoxylate aminotransf	0.004

>gnl|CDD|215460 PLN02855, PLN02855, Bifunctional selenocysteine lyase/cysteine desulfurase

 Score =  617 bits (1594), Expect = 0.0
 Identities = 255/311 (81%), Positives = 274/311 (88%), Gaps = 1/311 (0%)

Query: 40  TSTDSVSLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVH 99
            S  SVSLG  TRPDFPIL Q V GSK LVYLDNAATSQKP AVL ALQ+YYE YNSNVH
Sbjct: 6   ASAASVSLGAETRPDFPILDQTVNGSK-LVYLDNAATSQKPAAVLDALQDYYEEYNSNVH 64

Query: 100 RGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDE 159
           RGIH LSAKATD YELARKKVAAFINAS S EIVFT+NATEAINLVAY+WGL+NLK GDE
Sbjct: 65  RGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATEAINLVAYTWGLANLKPGDE 124

Query: 160 VILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISN 219
           VIL+VAEHHS IVPWQLVAQKTGA LKF+ L  DE  D+++LKE+LS KTKLV  HH+SN
Sbjct: 125 VILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDEVLDVEQLKELLSEKTKLVATHHVSN 184

Query: 220 MLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGF 279
           +L SILP+E+IVHW+H VGAKVLVDACQSVPHM VDVQ L ADFLVASSHKMCGPTGIGF
Sbjct: 185 VLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMPVDVQTLGADFLVASSHKMCGPTGIGF 244

Query: 280 LFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST 339
           L+GKSDLL +MPPFLGGGEMISDVFLDHST+A PPSRFEAGTPAIGEAIGLGAAIDYLS 
Sbjct: 245 LWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSE 304

Query: 340 IGMQKIHAYEV 350
           IGM +IH YEV
Sbjct: 305 IGMDRIHEYEV 315

Length = 424

>gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily

 Score =  477 bits (1230), Expect = e-169
 Identities = 181/300 (60%), Positives = 230/300 (76%), Gaps = 1/300 (0%)

Query: 52  RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
           R DFPIL +++ G K LVYLD+AATSQKP  V+ A+  YY   N+NVHRGIH LS +AT+
Sbjct: 4   RADFPILKRKING-KPLVYLDSAATSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATE 62

Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
            YE  R+KVA FINA+   EIVFT+  TE+INLVAYSWG SNLK+GDE++++  EHH+ I
Sbjct: 63  AYEAVREKVAKFINAASDEEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANI 122

Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
           VPWQL+A++TGA LKF+ L+DD + DLD L+++L+ KTKLV I H+SN+L ++ P+EEI 
Sbjct: 123 VPWQLLAERTGATLKFIPLDDDGTLDLDDLEKLLTEKTKLVAITHVSNVLGTVNPVEEIA 182

Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
             +H VGAKVLVD  Q+VPHM VDVQ LD DF V S HKM GPTGIG L+GK +LL  MP
Sbjct: 183 KLAHQVGAKVLVDGAQAVPHMPVDVQALDCDFYVFSGHKMYGPTGIGVLYGKEELLEQMP 242

Query: 292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVK 351
           PFLGGGEMI++V  + +T+ + P +FEAGTP I   IGLGAAIDYL  IG++ I A+E +
Sbjct: 243 PFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHE 302

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 403

>gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like

 Score =  464 bits (1197), Expect = e-164
 Identities = 166/281 (59%), Positives = 209/281 (74%), Gaps = 1/281 (0%)

Query: 69  VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD 128
           VYLDNAATSQKP  V+ A+ +YY  YN+NVHRG+H LSA+ATD YE AR+KVA FINA  
Sbjct: 1   VYLDNAATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPS 60

Query: 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188
             EI+FT+N TEAINLVAY  G +N K GDE++ +V EHHS IVPWQ +A++TGA LK +
Sbjct: 61  PDEIIFTRNTTEAINLVAYGLGRAN-KPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVV 119

Query: 189 NLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQS 248
            ++DD   DL+ L+++L+ +TKLV + H+SN+L +I P++EI   +H+ G  VLVD  QS
Sbjct: 120 PVDDDGQLDLEALEKLLTERTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQS 179

Query: 249 VPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHS 308
             HM VDVQ L  DFL  S HKM GPTGIG L+GK +LL  MPP+ GGGEMI +V  + +
Sbjct: 180 AGHMPVDVQDLGCDFLAFSGHKMLGPTGIGVLYGKEELLEEMPPYGGGGEMIEEVSFEET 239

Query: 309 TFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYE 349
           T+AD P +FEAGTP I  AIGLGAAIDYL  IGM+ I A+E
Sbjct: 240 TYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHE 280

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. Length = 373

>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V

 Score =  390 bits (1004), Expect = e-135
 Identities = 155/281 (55%), Positives = 202/281 (71%), Gaps = 1/281 (0%)

Query: 69  VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD 128
           +YLD+AAT+QKP AVL ALQ YY  YN NVHRG+H L  +AT  YE AR+KVA FINA  
Sbjct: 1   IYLDSAATTQKPQAVLDALQEYYTDYNGNVHRGVHHLGKEATQAYEEAREKVAEFINAPS 60

Query: 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188
             EI+FT   TEAINLVA S G S LK GDE+++T  EHH+ +VPWQ +A++TGA ++ +
Sbjct: 61  DEEIIFTSGTTEAINLVAISLGRS-LKPGDEILVTEMEHHANLVPWQELAKRTGATVRVI 119

Query: 189 NLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQS 248
            ++ +   DLD L+++L+ +TKLV I H+SN+  ++ P+EEI   +H+ GA V+VDA Q+
Sbjct: 120 PVDPNGLLDLDALEKLLTPRTKLVAITHVSNVTGTVNPVEEIGKLAHEYGALVVVDAAQA 179

Query: 249 VPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHS 308
           V H  +DVQ L  DFL  S HK+ GPTGIG L+G+ DLL  +PP LGGG MI  V L  +
Sbjct: 180 VGHRPIDVQALGVDFLAFSGHKLYGPTGIGVLYGRRDLLEKLPPLLGGGGMIDTVSLQET 239

Query: 309 TFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYE 349
           TFAD PS+FEAGTP I   IGLGAA+DYL+ IG++ I  +E
Sbjct: 240 TFADAPSKFEAGTPNIAGIIGLGAALDYLAEIGLEAIEKHE 280

This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370

>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

 Score =  383 bits (986), Expect = e-132
 Identities = 163/300 (54%), Positives = 210/300 (70%), Gaps = 5/300 (1%)

Query: 52  RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
           R DFP L +EV   K LVYLDNAATSQKP AVL A+  YY  YN+NVHRG H L+ +ATD
Sbjct: 9   RADFPALKREV--GKPLVYLDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATD 66

Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
            YE AR+ VA F+NA  S EIVFT+  TEA+NLVA   G S LK GDE++++  EHHS I
Sbjct: 67  LYEAAREAVARFLNADSSDEIVFTRGTTEALNLVARGLGRS-LKPGDEIVVSDLEHHSNI 125

Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
           VPWQ +A++TGA ++ + L+DD   DLD L+++++ KTKLV + H+SN+  ++ P++EI 
Sbjct: 126 VPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIA 185

Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAM 290
             +H+ GA VLVDA Q+  H+ +DVQ L  DFL  S HK + GPTGIG L+ + +LL  +
Sbjct: 186 ELAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKELLEEL 245

Query: 291 PPFLGGGEMISDV-FLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYE 349
            PFLGGG MI  V   +  T A+ P RFEAGTP I  AIGL AA+DYL  IGM+ I A+E
Sbjct: 246 EPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHE 305

Length = 405

>gnl|CDD|181766 PRK09295, PRK09295, bifunctional cysteine desulfurase/selenocysteine lyase; Validated

 Score =  354 bits (909), Expect = e-120
 Identities = 149/299 (49%), Positives = 200/299 (66%), Gaps = 2/299 (0%)

Query: 52  RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
           R DFP+L +EV G   L YLD+AA++QKP  V+ A   +Y    + VHRGIH LSA+AT+
Sbjct: 9   RADFPVLSREVNG-LPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATE 67

Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
           + E  RK+ A FINA  + E+VF +  TE INLVA SWG SN+++GD +I++  EHH+ I
Sbjct: 68  KMENVRKQAALFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANI 127

Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
           VPWQ++  + GA L+ + LN D +  L+ L  +   +T+L+ I H+SN+L +  P+ E++
Sbjct: 128 VPWQMLCARVGAELRVIPLNPDGTLQLETLPALFDERTRLLAITHVSNVLGTENPLAEMI 187

Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
             +H  GAKVLVD  Q+V H  VDVQ LD DF V S HK+ GPTGIG L+ K  LL  MP
Sbjct: 188 ALAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMP 247

Query: 292 PFLGGGEMISDVFLDH-STFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYE 349
           P+ GGG MI+ V L   +T+A  P RFEAGTP  G  IGLGAA+DY+S +G+  I  YE
Sbjct: 248 PWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYE 306

Length = 406

>gnl|CDD|182799 PRK10874, PRK10874, cysteine sulfinate desulfinase; Provisional

 Score =  293 bits (752), Expect = 7e-97
 Identities = 126/299 (42%), Positives = 182/299 (60%), Gaps = 6/299 (2%)

Query: 52  RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
           R  FP L          VYLD+AAT+ KP AV++A Q +Y     NVHR     + + T 
Sbjct: 10  RAQFPALQDA------GVYLDSAATALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTA 63

Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
            YE AR++VA  +NA D+  IV+T+  TE+INLVA S+    L+ GDE+I++ AEHH+ +
Sbjct: 64  RYEAAREQVAQLLNAPDAKNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANL 123

Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
           VPW +VAQ+TGA +  L L  D  PD+D L E+++ +T+++ +  +SN+      +   +
Sbjct: 124 VPWLMVAQQTGAKVVKLPLGADRLPDVDLLPELITPRTRILALGQMSNVTGGCPDLARAI 183

Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
             +H  G  V+VD  Q   H   DVQ LD DF   S HK+ GPTGIG L+GKS+LL AM 
Sbjct: 184 TLAHQAGMVVMVDGAQGAVHFPADVQALDIDFYAFSGHKLYGPTGIGVLYGKSELLEAMS 243

Query: 292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEV 350
           P+ GGG+M+++V  D  T    P RFEAGTP +   IGL AA+++L+ I + +  ++  
Sbjct: 244 PWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSR 302

Length = 401

>gnl|CDD|132433 TIGR03392, FeS_syn_CsdA, cysteine desulfurase, catalytic subunit CsdA

 Score =  278 bits (713), Expect = 4e-91
 Identities = 131/299 (43%), Positives = 184/299 (61%), Gaps = 6/299 (2%)

Query: 52  RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
           R  FP L          VYLD+AAT+ KP AV+ A Q +Y   +  VHR  H  +   T 
Sbjct: 7   RQQFPAL------QDGTVYLDSAATALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTA 60

Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
            YELAR++VA F+NA D+  IV+T+  TE+INLVA S+    L+ GDE+I++ AEHH+ +
Sbjct: 61  RYELARQQVARFLNAPDAENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANL 120

Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
           +PW +VAQ+TGA +  L +  D  PD+ +L E+L+ +T+++ +  +SN+      +   +
Sbjct: 121 IPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLTPRTRILALGQMSNVTGGCPDLARAI 180

Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
             +H  GA V+VD  Q V H   DVQ LD DF   S HK+ GPTGIG L+GK++LL AMP
Sbjct: 181 TLAHQYGAVVVVDGAQGVVHGPPDVQALDIDFYAFSGHKLYGPTGIGVLYGKTELLEAMP 240

Query: 292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEV 350
           P+ GGG+M+S V  D       P RFEAGTP I   IGL AA+++L+ I +    A+ V
Sbjct: 241 PWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSV 299

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 398

>gnl|CDD|233664 TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein, VC1184 subfamily

 Score =  182 bits (464), Expect = 6e-54
 Identities = 107/314 (34%), Positives = 154/314 (49%), Gaps = 37/314 (11%)

Query: 52  RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
           R  FP L          V+ DN A +Q P +V  A+       N+N  RG  + S++  D
Sbjct: 7   RGQFPALADGDR-----VFFDNPAGTQIPQSVADAVSAALTRSNAN--RGGAYESSRRAD 59

Query: 112 EY-ELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSA 170
           +  + AR+ VA  +NA D  E+VF  NAT    L++ +        GDEVI+T  +H + 
Sbjct: 60  QVVDDAREAVADLLNA-DPPEVVFGANATSLTFLLSRAIS-RRWGPGDEVIVTRLDHEAN 117

Query: 171 IVPWQLVAQKTGANLKFLNLNDDESP-DLDKLKEMLSRKTKLVVIHHISNMLASILPIEE 229
           I PW   A++ GA +K+  +++       D L  +LS +T+LV +   SN L SI+ +  
Sbjct: 118 ISPWLQAAERAGAKVKWARVDEATGELHPDDLASLLSPRTRLVAVTAASNTLGSIVDLAA 177

Query: 230 IVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSA 289
           I    H  GA V+VDA    PH ++DVQ   ADFL  S++K  GP  +G L+G+ +LL  
Sbjct: 178 ITELVHAAGALVVVDAVHYAPHGLIDVQATGADFLTCSAYKFFGPH-MGILWGRPELLMN 236

Query: 290 MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG-------- 341
           +PP+           L  S     P RFE GTP      G+ AA+DYL+ +G        
Sbjct: 237 LPPYK----------LTFSY-DTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRR 285

Query: 342 ------MQKIHAYE 349
                  Q I AYE
Sbjct: 286 ERLVASFQAIDAYE 299

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase [Unknown function, Enzymes of unknown specificity]. Length = 397

>gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein

 Score =  176 bits (447), Expect = 9e-52
 Identities = 95/288 (32%), Positives = 150/288 (52%), Gaps = 16/288 (5%)

Query: 69  VYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS 127
           +Y DNAAT+  KP  V +A+ ++Y+ Y  +  RG + L+ +A+ E E  R+ +A   NA 
Sbjct: 1   IYFDNAATTYPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAP 60

Query: 128 DSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKF 187
            S  +VFT NAT A+N+     GL  LK GD VI T  EH+S   P + + ++ G  +  
Sbjct: 61  SSAHVVFTNNATTALNIALK--GL--LKEGDHVITTPMEHNSVARPLECLKEQIGVEITI 116

Query: 188 LNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQ 247
           +  +++     +++K  +   TKL+V+ H SN+  +ILPIEEI   + + G   ++DA Q
Sbjct: 117 VKCDNEGLISPERIKRAIKTNTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQ 176

Query: 248 SVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLD 306
           +   + +D+  L  D L  + HK + GP G G L+ +  +   + P   GG       +D
Sbjct: 177 TAGVIPIDMTELAIDMLAFTGHKGLLGPQGTGGLYIREGI--KLKPLKSGGTGSHSALID 234

Query: 307 HSTFADPPSRFEAGT---PAIGEAIGLGAAIDYLSTIGMQKIHAYEVK 351
             +    P RFE+GT   P I    GL A I ++  IG+  I   E  
Sbjct: 235 QPSEL--PDRFESGTLNTPGI---AGLNAGIKFIEKIGIANIAKKECM 277

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown [Unknown function, Enzymes of unknown specificity]. Length = 376

>gnl|CDD|224029 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

 Score =  144 bits (366), Expect = 1e-39
 Identities = 75/236 (31%), Positives = 119/236 (50%), Gaps = 15/236 (6%)

Query: 69  VYLDNAATSQKPI--AVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINA 126
           +YLDNAAT+  P+   VL+A+  Y      N    +H    +A    E AR+++A  + A
Sbjct: 3   IYLDNAATT--PVDPEVLEAMLPYLTEVFGNPS-SLHSFGREARKAVEEAREQIAKLLGA 59

Query: 127 SDSGEIVFTKNATEAINLV--AYSWGLSNLKSGDEVILTVAEHHSAI--VPWQLVAQKTG 182
            D  EI+FT  ATE+ NL     +    N + G  +I +  EH + +    +    ++ G
Sbjct: 60  -DPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRY---LERQG 115

Query: 183 ANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVL 242
             + +L ++ +   DL++L+E L   T LV I H +N   +I PI EI     + G    
Sbjct: 116 FEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFH 175

Query: 243 VDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGE 298
           VDA Q+V  + +D++ L  D L  S+HK  GP GIG L+ +  +   + P + GG 
Sbjct: 176 VDAVQAVGKIPIDLEELGVDLLSFSAHKFGGPKGIGALYVRPGV--RLEPLIHGGG 229

Length = 386

>gnl|CDD|132443 TIGR03402, FeS_nifS, cysteine desulfurase NifS

 Score =  125 bits (316), Expect = 1e-32
 Identities = 80/276 (28%), Positives = 133/276 (48%), Gaps = 21/276 (7%)

Query: 69  VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD 128
           +YLDN AT++    VL+A+  Y+  Y  N    +H    +     E AR++VA  + A  
Sbjct: 1   IYLDNNATTRVDPEVLEAMLPYFTEYFGNP-SSMHSFGGEVGKAVEEAREQVAKLLGAEP 59

Query: 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188
             EI+FT   TE+ N    S  L+       +I T  EH + +   Q + +K G  + +L
Sbjct: 60  D-EIIFTSGGTESDNTAIKS-ALAAQPEKRHIITTAVEHPAVLSLCQHL-EKQGYKVTYL 116

Query: 189 NLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQS 248
            ++++   DL++L+  ++  T LV +   +N   +I PIEEI   + + GA    DA Q+
Sbjct: 117 PVDEEGRLDLEELRAAITDDTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQA 176

Query: 249 VPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHS 308
           V  + +D++ ++ D L  S HK+ GP G+G L+ +        P L GG         H 
Sbjct: 177 VGKIPIDLKEMNIDMLSLSGHKLHGPKGVGALYIRKGT--RFRPLLRGG---------HQ 225

Query: 309 TFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQK 344
                     AGT  +   +GLG A + L+T  +++
Sbjct: 226 ER-----GRRAGTENVPGIVGLGKAAE-LATEHLEE 255

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. Length = 379

>gnl|CDD|163191 TIGR03235, DNA_S_dndA, cysteine desulfurase DndA

 Score =  106 bits (267), Expect = 4e-26
 Identities = 72/232 (31%), Positives = 108/232 (46%), Gaps = 4/232 (1%)

Query: 70  YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDS 129
           YLD+ AT+    AV +A+  +      N     H     A    E ARK+VA  + A D+
Sbjct: 1   YLDHNATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGA-DT 59

Query: 130 GEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189
            E++FT  ATE+ NL       +  + G + I+T A  H A++      ++ G  + +L 
Sbjct: 60  EEVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLP 119

Query: 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSV 249
           +++    D+D+L + +   T LV I H++N   SI PI EI        A   VDA Q V
Sbjct: 120 VDESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVV 179

Query: 250 PHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDL---LSAMPPFLGGGE 298
             + VD+     D +  S HK+ GP GIG L  +          P   GGG+
Sbjct: 180 GKITVDLSADRIDLISCSGHKIYGPKGIGALVIRKRGKPKAPLKPIMFGGGQ 231

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase [DNA metabolism, Restriction/modification]. Length = 353

>gnl|CDD|184450 PRK14012, PRK14012, cysteine desulfurase; Provisional

 Score =  106 bits (268), Expect = 7e-26
 Identities = 68/220 (30%), Positives = 106/220 (48%), Gaps = 14/220 (6%)

Query: 69  VYLDNAATSQKPIAVLKALQNYYEAYN--SNVHRGIHFLSAKATDEYELARKKVAAFINA 126
           +YLD +AT+     V + +  Y        N     H    +A +  ++AR ++A  I A
Sbjct: 5   IYLDYSATTPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGA 64

Query: 127 SDSGEIVFTKNATEAINL----VAYSWGLSNLKSGDEVILTVAEHHSAIVPW-QLVAQKT 181
            D  EIVFT  ATE+ NL     A+ +     K G  +I +  EH + +    QL  ++ 
Sbjct: 65  -DPREIVFTSGATESDNLAIKGAAHFYQ----KKGKHIITSKTEHKAVLDTCRQL--ERE 117

Query: 182 GANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKV 241
           G  + +L+   +   DL+KL+  +   T LV I H++N +  I  I  I     + G   
Sbjct: 118 GFEVTYLDPQSNGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQDIAAIGEICRERGIIF 177

Query: 242 LVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLF 281
            VDA QSV  + +D+  L  D +  S+HK+ GP GIG L+
Sbjct: 178 HVDAAQSVGKVPIDLSKLKVDLMSFSAHKIYGPKGIGALY 217

Length = 404

>gnl|CDD|131061 TIGR02006, IscS, cysteine desulfurase IscS

 Score =  105 bits (264), Expect = 2e-25
 Identities = 67/213 (31%), Positives = 100/213 (46%), Gaps = 2/213 (0%)

Query: 69  VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD 128
           +YLD AAT+     V + +  Y      N     H    +A +  E AR +VA  I A D
Sbjct: 5   IYLDYAATTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGA-D 63

Query: 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188
           S EIVFT  ATE+ NL            G+ +I +  EH + +   + + ++ G  + +L
Sbjct: 64  SREIVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLERE-GFEVTYL 122

Query: 189 NLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQS 248
               +   DL++LK  +   T LV I H++N +  I  I  I     +      VDA QS
Sbjct: 123 PPKSNGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQS 182

Query: 249 VPHMVVDVQGLDADFLVASSHKMCGPTGIGFLF 281
           V  + ++V  L  D +  S HK+ GP GIG L+
Sbjct: 183 VGKIPINVNELKVDLMSISGHKIYGPKGIGALY 215

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Protein synthesis, tRNA and rRNA base modification]. Length = 402

>gnl|CDD|132444 TIGR03403, nifS_epsilon, cysteine desulfurase, NifS family, epsilon proteobacteria type

 Score =  101 bits (254), Expect = 3e-24
 Identities = 69/241 (28%), Positives = 110/241 (45%), Gaps = 18/241 (7%)

Query: 69  VYLDNAATSQKPIAVLKALQNYYEAYNSN---VHR---GIHFLSAKATDEYELARKKVAA 122
           VYLDN AT+     V + +  ++     N   +H+     H   A+A D       K+  
Sbjct: 1   VYLDNNATTMLDPKVKELMDPFFCDIYGNPNSLHQFGTATHPAIAEALD-------KLYK 53

Query: 123 FINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD--EVILTVAEHHSAIVPWQLVAQK 180
            INA D  +I+ T  ATE+ N V        +  G    +I T  EH  A+       + 
Sbjct: 54  GINARDLDDIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEH-PAVRATCAFLES 112

Query: 181 TGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAK 240
            G  + +L +N+  +   ++++E ++ KT LV +   +N    I PI+EI     + G  
Sbjct: 113 LGVEVTYLPINEQGTITAEQVREAITEKTALVSVMWANNETGMIFPIKEIGEICKERGVL 172

Query: 241 VLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMI 300
              DA Q++  + VDVQ    DFL  S+HK  GP G+G L+ +  +   + P   GGE +
Sbjct: 173 FHTDAVQAIGKIPVDVQKAGVDFLSFSAHKFHGPKGVGGLYIRKGV--ELTPLFHGGEHM 230

Query: 301 S 301
            
Sbjct: 231 G 231

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PMID:11123951), so we use this designation. Length = 382

>gnl|CDD|178257 PLN02651, PLN02651, cysteine desulfurase

 Score =  101 bits (253), Expect = 4e-24
 Identities = 82/268 (30%), Positives = 117/268 (43%), Gaps = 22/268 (8%)

Query: 69  VYLDNAATSQKPI--AVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINA 126
           +YLD  AT+  PI   VL A+  +   +  N H   H    ++ D  E AR +VAA I A
Sbjct: 1   LYLDMQATT--PIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGA 58

Query: 127 SDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLK 186
            D  EI+FT  ATE+ NL               VI T  EH   ++      Q+ G  + 
Sbjct: 59  -DPKEIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEH-KCVLDSCRHLQQEGFEVT 116

Query: 187 FLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDAC 246
           +L +  D   DLD+L   +   T LV +  ++N +  I P+EEI     +       DA 
Sbjct: 117 YLPVKSDGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAA 176

Query: 247 QSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPP-FLGGGEMISDVFL 305
           Q+V  + VDV  L  D +  S HK+ GP G+G L+ +      + P   GGG+       
Sbjct: 177 QAVGKIPVDVDDLGVDLMSISGHKIYGPKGVGALYVRRRPRVRLEPLMSGGGQ------- 229

Query: 306 DHSTFADPPSRFEAGTPAIGEAIGLGAA 333
                        +GT      +GLGAA
Sbjct: 230 --------ERGRRSGTENTPLVVGLGAA 249

Length = 364

>gnl|CDD|179511 PRK02948, PRK02948, cysteine desulfurase; Provisional

 Score = 76.7 bits (189), Expect = 2e-15
 Identities = 55/211 (26%), Positives = 91/211 (43%), Gaps = 3/211 (1%)

Query: 68  LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS 127
           ++YLD AAT+      L+  Q     Y  N    +H +   A+   ++ RK  A  I   
Sbjct: 1   MIYLDYAATTPMSKEALQTYQKAASQYFGN-ESSLHDIGGTASSLLQVCRKTFAEMIGGE 59

Query: 128 DSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKF 187
           + G I FT   TE+  L   S   +  ++   +I T  EH S    +Q +  + G  +  
Sbjct: 60  EQG-IYFTSGGTESNYLAIQSLLNALPQNKKHIITTPMEHASIHSYFQSLESQ-GYTVTE 117

Query: 188 LNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQ 247
           + ++      L  L+  ++  T L  I H ++ + +I PI EI             D  Q
Sbjct: 118 IPVDKSGLIRLVDLERAITPDTVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQ 177

Query: 248 SVPHMVVDVQGLDADFLVASSHKMCGPTGIG 278
           +   + +DV  +  D L  S+HK+ GP G+G
Sbjct: 178 TFGKLPIDVFEMGIDSLSVSAHKIYGPKGVG 208

Length = 381

>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

 Score = 71.3 bits (175), Expect = 9e-15
 Identities = 41/177 (23%), Positives = 67/177 (37%), Gaps = 14/177 (7%)

Query: 113 YELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIV 172
            E   +K+A  +   +    VF  + T A      +     L  GDEVI+    H S   
Sbjct: 2   LEELEEKLARLLQPGNDK-AVFVPSGTGANEAALLAL----LGPGDEVIVDANGHGSRYW 56

Query: 173 PWQLVAQKTGANLKFLNLNDDESPDLD---KLKEMLSRKTKLVVIHHISNMLASILPIEE 229
              + A+  GA    + ++D     LD     +        L+VI   +     ++P++E
Sbjct: 57  ---VAAELAGAKPVPVPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKE 113

Query: 230 IVHWSHDVGAKVLVDACQSVPHMVVDVQGLD---ADFLVASSHKMCGPTGIGFLFGK 283
           I   + + G  +LVDA  +          +    AD +  S HK  G  G G +  K
Sbjct: 114 IRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNLGGEGGGVVIVK 170

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170

>gnl|CDD|234554 TIGR04343, egtE_PLP_lyase, ergothioneine biosynthesis PLP-dependent enzyme EgtE

 Score = 72.2 bits (177), Expect = 5e-14
 Identities = 66/283 (23%), Positives = 115/283 (40%), Gaps = 27/283 (9%)

Query: 69  VYLDNAATSQKPIAVLKALQNY--YEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINA 126
           V+LD+AA S++  A L A+  +  +EA       G +  +  A    +  R  VAA    
Sbjct: 15  VHLDSAACSRQSFATLDAVAQHARHEA-----EVGGYVAAEAAAPVLDAGRAAVAALTGM 69

Query: 127 SDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLK 186
             + ++VFT  +  A++L+  SW   +      V     E+   +     +    G  ++
Sbjct: 70  PAA-DVVFTTGSNHALDLLLGSWPGPS----RTVACLPGEYGPNL----AIMAAHGFEVR 120

Query: 187 FLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDA 245
            L ++DD   D+D     L      LV +  + +   ++ P   +       G  ++VDA
Sbjct: 121 ELPVDDDGRLDVDGAASALRADPPALVHLTVVGSHRGTVQPAAAVAELCRAAGVPLVVDA 180

Query: 246 CQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVF 304
            Q++ H  +D   + AD   +SS K + GP G+G L  + +LL  + P L   +      
Sbjct: 181 AQALGH--LDC-AVGADAYYSSSRKWLAGPRGVGVLAVRPELLERLAPRLPPPDWPEASP 237

Query: 305 LDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHA 347
           L  +       R E G   I   +G   A+      G   + A
Sbjct: 238 LAVA------QRLEHGEANIAARVGFSVAVGEHLAAGPAAVRA 274

Members of this protein family are the pyridoxal phosphate-dependent enzyme EgtE, which catalyzes the final step in the biosynthesis of ergothioneine [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs]. Length = 370

>gnl|CDD|213793 TIGR03301, PhnW-AepZ, 2-aminoethylphosphonate aminotransferase

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 39/110 (35%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 188 LNLNDDESPDLDKLKEMLSRK---TKLVVIHHISNMLASIL-PIEEIVHWSHDVGAKVLV 243
           LN ++ E PDL++++E L+     T +  +HH +     IL P+E I   +   GA ++V
Sbjct: 103 LNFSEYEPPDLNRIEEALAADPDITHVATVHHETT--TGILNPLEAIAKVARSHGAVLIV 160

Query: 244 DACQSVPHMVVDVQGLDADFLVASSHKMC--GPTGIGFLFGKSDLLSAMP 291
           DA  S   + +D++ LD D L+AS++K C  G  G GF+  + DLL A  
Sbjct: 161 DAMSSFGAIPIDIEELDVDALIASANK-CLEGVPGFGFVIARRDLLEASA 209

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level TIGR02326. The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. Length = 355

>gnl|CDD|226363 COG3844, COG3844, Kynureninase [Amino acid transport and metabolism]

 Score = 55.6 bits (134), Expect = 2e-08
 Identities = 67/288 (23%), Positives = 112/288 (38%), Gaps = 20/288 (6%)

Query: 69  VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARK---KVAAFIN 125
           +YLD  +   +P AV   LQ    A +      I   +    D ++L  +   K+A  I 
Sbjct: 33  IYLDGNSLGARPRAVTARLQQ--VATDEWGEGLIRSWNKAKADWFDLPERLGDKLAPLIG 90

Query: 126 ASDSGEIVFTKNATEAIN--LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGA 183
           A  +GE+V T   +  +   L A        + G  VI  V+E  +   P  L   +  A
Sbjct: 91  AR-AGEVVVTDTTSINLFKVLAAAL----RPQEGRRVI--VSEGDN--FPTDLYIAEGLA 141

Query: 184 NLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLV 243
           +L  +  + +       L+E ++    +V++ H++     +L +  I   +H  GA V  
Sbjct: 142 DLLGIGYDLEGVIAPRALEEAITDDVAVVLLSHVNYKTGQLLDMRAITALAHQHGALVGW 201

Query: 244 DACQSVPHMVVDVQGLDADFLVASSHKMC--GPTGIGFLFGKSDLLSAMPPFLGGGEMIS 301
           D   S   + VD+    ADF +  S+K    GP     LF          P L G    +
Sbjct: 202 DLAHSAGAVPVDLHAAGADFAIGCSYKYLNGGPGAPAGLFVAPRHRERSWPPLSGWWGHA 261

Query: 302 DVFLDHSTFADPP--SRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHA 347
             F     +A  P   RF  GT  +     L  A+D  + + + ++  
Sbjct: 262 RPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRK 309

Length = 407

>gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated

 Score = 54.9 bits (133), Expect = 2e-08
 Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 19/136 (13%)

Query: 117 RKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVIL---TVAEHHSAIVP 173
           ++ VA+         I+ T  AT A  LV Y+     ++ GD VI    T  + +   +P
Sbjct: 68  KEAVASLYQNVKPENILQTNGATGANFLVLYAL----VEPGDHVISVYPTYQQLYD--IP 121

Query: 174 WQLVAQKTGANLKFLNLNDDE--SPDLDKLKEMLSRKTKLVVIHHISNMLASILP---IE 228
             L     GA + +  L ++    PDLD+L+ ++   TKL+ I++ +N   +++    +E
Sbjct: 122 ESL-----GAEVDYWQLKEENGWLPDLDELRRLVRPNTKLICINNANNPTGALMDRAYLE 176

Query: 229 EIVHWSHDVGAKVLVD 244
           EIV  +  V A VL D
Sbjct: 177 EIVEIARSVDAYVLSD 192

Length = 373

>gnl|CDD|236469 PRK09331, PRK09331, Sep-tRNA:Cys-tRNA synthetase; Provisional

 Score = 52.6 bits (127), Expect = 1e-07
 Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 23/172 (13%)

Query: 118 KKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLV 177
           + +A F+      E   T  A E    V +S      K GD V+L    H+++ V     
Sbjct: 70  EDLAEFLGMD---EARVTHGAREGKFAVMHSLC----KKGDYVVLDGLAHYTSYV----A 118

Query: 178 AQKTGANLKFLNLNDDES----PD-----LDKLKEMLSRKTKLVVIHHISNMLASILPIE 228
           A++ G N++ +           P+     ++++KE   +   L ++ H+     ++   +
Sbjct: 119 AERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAK 178

Query: 229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-M--CGPTGI 277
           ++   +H+ G   L++   +V  M VD + L ADF+V S HK M    P+G+
Sbjct: 179 KVAKVAHEYGIPFLLNGAYTVGRMPVDGKKLGADFIVGSGHKSMAASAPSGV 230

Length = 387

>gnl|CDD|184076 PRK13479, PRK13479, 2-aminoethylphosphonate--pyruvate transaminase; Provisional

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 9/119 (7%)

Query: 177 VAQKTGANLKFLNLNDDESPDLDKLKEML---SRKTKLVVIHHISNMLASIL-PIEEIVH 232
           +A+  G     L+  +DE PD  +++  L    R T + ++H        IL P++EI  
Sbjct: 98  IAEYLGIAHVVLDTGEDEPPDAAEVEAALAADPRITHVALVH--CETTTGILNPLDEIAA 155

Query: 233 WSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMC--GPTGIGFLFGKSDLLSA 289
            +   G +++VDA  S   + +D+  L  D L++S++K C  G  G GF+  +   L A
Sbjct: 156 VAKRHGKRLIVDAMSSFGAIPIDIAELGIDALISSANK-CIEGVPGFGFVIARRSELEA 213

Length = 368

>gnl|CDD|215384 PLN02724, PLN02724, Molybdenum cofactor sulfurase

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 67/281 (23%), Positives = 112/281 (39%), Gaps = 56/281 (19%)

Query: 66  KKLVYLDNAATSQKPIAVLKA---LQNYYEAYNSNVHRGIHF---LSAKATDEYELARKK 119
           K +VYLD+A       A L +   L+     ++SNV+   H     S +++D  E AR++
Sbjct: 33  KGVVYLDHAG------ATLYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQ 86

Query: 120 VAAFINASDSGE--IVFTKNATEAINLV--AYSWGLSNLKSGDEVILTVAEHHSAIVPWQ 175
           V  + NA    +   VFT  AT A+ LV   + W      S      T+  H+S +   +
Sbjct: 87  VLEYFNAP-PSDYACVFTSGATAALKLVGETFPW-----SSESHFCYTLENHNSVLGIRE 140

Query: 176 LVAQKTGANL-----KFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI----LP 226
              +K  A +     +  N   +    +      L R+     +    +   +      P
Sbjct: 141 YALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRR-NTSKLQKREDDGEAYNLFAFP 199

Query: 227 IE----------EIVHW----SHDVGAK-----VLVDACQSVPHMVVDVQGLDADFLVAS 267
            E          ++V       H   +K     VL+DA +       D+    ADF+V S
Sbjct: 200 SECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSPPDLSRYPADFVVVS 259

Query: 268 SHKMCG-PTGIGFLFGKSDLLSAM-PPFLGGGEM---ISDV 303
            +K+ G PTG+G L  + D    +   + GGG +   I+D+
Sbjct: 260 FYKIFGYPTGLGALLVRRDAAKLLKKKYFGGGTVAASIADI 300

Length = 805

>gnl|CDD|99745 cd06452, SepCysS, Sep-tRNA:Cys-tRNA synthase

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 37/173 (21%), Positives = 74/173 (42%), Gaps = 27/173 (15%)

Query: 119 KVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVA 178
            +A F+      E   T  A E    V +S      + GD V++    H+++ V     A
Sbjct: 52  DLAEFLG---MDEARVTPGAREGKFAVMHSLC----EKGDWVVVDGLAHYTSYV----AA 100

Query: 179 QKTGANLKFLNLNDDESPD-----------LDKLKEMLSRKTKLVVIHHISNMLASILPI 227
           ++ G N++   + +   P+           ++++K+   +   L ++ H+     ++   
Sbjct: 101 ERAGLNVR--EVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDA 158

Query: 228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK---MCGPTGI 277
           ++I    H+ G  +L++   +V  M V  + L ADF+V S HK      P G+
Sbjct: 159 KKIAKVCHEYGVPLLLNGAYTVGRMPVSGKELGADFIVGSGHKSMAASAPIGV 211

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. Length = 361

>gnl|CDD|131379 TIGR02326, transamin_PhnW, 2-aminoethylphosphonate--pyruvate transaminase

 Score = 47.5 bits (113), Expect = 6e-06
 Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 9/105 (8%)

Query: 191 NDDESPDLDKLKEMLSRK---TKLVVIHHISNMLASIL-PIEEIVHWSHDVGAKVLVDAC 246
            + E PD+ +++ +L+     T + ++H        IL PIE +   +H  G   +VDA 
Sbjct: 110 GEVEPPDVVEVEAILAADPAITHIALVH--CETTTGILNPIEAVAKLAHRHGKVTIVDAM 167

Query: 247 QSVPHMVVDVQGLDADFLVASSHKMC--GPTGIGFLFGKSDLLSA 289
            S   + +D+  L  D+L++S++K C  G  G GF+  +   L+A
Sbjct: 168 SSFGGIPIDIAELHIDYLISSANK-CIQGVPGFGFVIARQAELAA 211

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli [Central intermediary metabolism, Phosphorus compounds]. Length = 363

>gnl|CDD|169194 PRK08045, PRK08045, cystathionine gamma-synthase; Provisional

 Score = 47.2 bits (112), Expect = 8e-06
 Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 24/159 (15%)

Query: 133 VFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQL---VAQKTGANLKFLN 189
           V T     AI+LV   +    LK GD   L VA H      ++L   +A++    + F++
Sbjct: 71  VLTNTGMSAIHLVTTVF----LKPGD---LLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD 123

Query: 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSV 249
             D+++     L+  L+ K KLV++   SN L  ++ I +I H + + GA  +VD     
Sbjct: 124 QGDEQA-----LRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLS 178

Query: 250 PHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLS 288
           P +   +  L AD ++ S  K        +L G SD+++
Sbjct: 179 PALQNPL-ALGADLVLHSCTK--------YLNGHSDVVA 208

Length = 386

>gnl|CDD|223153 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 38/177 (21%), Positives = 72/177 (40%), Gaps = 12/177 (6%)

Query: 177 VAQKTGANLKFLNLNDDESPDLDKLKEMLSRKT--KLVVIHHISNMLASILPIEEIVHWS 234
           +A++ GA +  L +   E+ D ++++E L +    K V + H       + P++EI   +
Sbjct: 98  IAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAA 157

Query: 235 HDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMC--GPTGIGFLFGKSDLLSAMPP 292
            + GA ++VDA  S+    + V     D  +  S K     P G+ F+      L A+  
Sbjct: 158 KEHGALLIVDAVSSLGGEPLKVDEWGIDVAITGSQK-ALGAPPGLAFVAVSERALEAI-- 214

Query: 293 FLGGGEMISDVFLDHSTFADPPSRFEA--GTPAIGEAIGLGAAIDYLSTIGMQKIHA 347
                      +LD   +     +  +   TP +     L  A+D +   G++   A
Sbjct: 215 ---EERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIA 268

Length = 383

>gnl|CDD|233915 TIGR02539, SepCysS, O-phospho-L-seryl-tRNA:Cys-tRNA synthase

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 36/173 (20%), Positives = 72/173 (41%), Gaps = 27/173 (15%)

Query: 119 KVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVA 178
            +A F+      E   T  A E    V ++      K GD V+L    H+++ V     A
Sbjct: 59  DLAEFLG---MDEARVTHGAREGKFAVMHALC----KEGDWVVLDGLAHYTSYV----AA 107

Query: 179 QKTGANLKFLNLNDDESPD-----------LDKLKEMLSRKTKLVVIHHISNMLASILPI 227
           ++ G N+K   +     P+           ++++++   +   L ++ H+     ++   
Sbjct: 108 ERAGLNVK--EVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDA 165

Query: 228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK---MCGPTGI 277
            ++     + G  +L++   +V  M V  + + ADF+V S HK     GP G+
Sbjct: 166 GKVAKVCREKGVPLLLNCAYTVGRMPVSAKEIGADFIVGSGHKSMAASGPCGV 218

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. Length = 370

>gnl|CDD|224028 COG1103, COG1103, Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

 Score = 44.8 bits (106), Expect = 4e-05
 Identities = 35/173 (20%), Positives = 72/173 (41%), Gaps = 27/173 (15%)

Query: 119 KVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVA 178
            +A F+      E+  T  A EA   V ++      K GD V++    H++  V     A
Sbjct: 69  DLAEFLG---MDEVRVTAGAREAKFAVMHALC----KEGDWVVVDSLAHYTTYV----AA 117

Query: 179 QKTGANLKFLNLNDDESPD-----------LDKLKEMLSRKTKLVVIHHISNMLASILPI 227
           ++ G N+    + +   P+           ++++K+       L ++ H+     ++   
Sbjct: 118 ERAGLNVA--EVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADA 175

Query: 228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK---MCGPTGI 277
           +++     + G  +L++   +V  M V  + + ADF+V S HK      P G+
Sbjct: 176 KKVAKICREYGVPLLLNCAYTVGRMPVSGKEIGADFIVGSGHKSMAASAPIGV 228

Length = 382

>gnl|CDD|216267 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme

 Score = 44.9 bits (107), Expect = 4e-05
 Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 18/136 (13%)

Query: 154 LKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVV 213
           LK+GD V+ T   +      ++ V  + G  + F++ +D     LD L+  +   TK V 
Sbjct: 88  LKAGDHVVATDDLYGGTYRLFEKVLPRFGIEVTFVDPSD-----LDALEAAIKPNTKAVF 142

Query: 214 IHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLD--ADFLVASSHKM 271
           +   +N L  ++ IE I   +   GA V+VD   + P      + L+  AD +V S+ K 
Sbjct: 143 LETPTNPLLKVVDIEAIAKIAKKHGALVVVDNTFASP---YLQRPLELGADIVVHSATK- 198

Query: 272 CGPTGIGFLFGKSDLL 287
                  ++ G SD++
Sbjct: 199 -------YIGGHSDVV 207

This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor. Length = 382

>gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional

 Score = 44.4 bits (106), Expect = 6e-05
 Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 28/145 (19%)

Query: 80  PIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-----DSGEIVF 134
           P AV +AL+   E  +  +H    ++       Y   R+ +A  +N        +  IV 
Sbjct: 48  PAAVKEALRELAEEEDPGLHG---YMPNAG---YPEVREAIAESLNRRFGTPLTADHIVM 101

Query: 135 TKNATEAINLVAYSWGLSNLKS----GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190
           T  A  A+N+         LK+    GDEVI   A +    V ++      G  L  +  
Sbjct: 102 TCGAAGALNVA--------LKAILNPGDEVI-VFAPY---FVEYRFYVDNHGGKLVVVPT 149

Query: 191 NDDE-SPDLDKLKEMLSRKTKLVVI 214
           + D   PDLD L+  ++ KTK V+I
Sbjct: 150 DTDTFQPDLDALEAAITPKTKAVII 174

Length = 394

>gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

 Score = 44.1 bits (105), Expect = 7e-05
 Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 5/91 (5%)

Query: 154 LKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVV 213
           LK+GD V+ +   +      ++ +  K G  + F++       D + L+  +  +TKLV 
Sbjct: 76  LKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDP-----DDPEALEAAIKPETKLVY 130

Query: 214 IHHISNMLASILPIEEIVHWSHDVGAKVLVD 244
           +   +N    ++ IE I   +H+ GA ++VD
Sbjct: 131 VESPTNPTLKVVDIEAIAELAHEHGALLVVD 161

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. Length = 369

>gnl|CDD|181567 PRK08861, PRK08861, cystathionine gamma-synthase; Provisional

 Score = 44.1 bits (104), Expect = 8e-05
 Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 16/141 (11%)

Query: 133 VFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLV---AQKTGANLKFLN 189
           V T   T A+NL    W +S L   D++I  VA H      ++L    A K    ++F++
Sbjct: 72  VVTNCGTSALNL----W-VSALLGPDDLI--VAPHDCYGGTYRLFNTRANKGDFKVQFVD 124

Query: 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSV 249
            +D  +     L   L++K KL+++   SN L  ++ I E+   +  VGA V VD     
Sbjct: 125 QSDAAA-----LDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLT 179

Query: 250 PHMVVDVQGLDADFLVASSHK 270
           P +   ++ L ADF++ S+ K
Sbjct: 180 PVLQKPLE-LGADFVIHSTTK 199

Length = 388

>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 33/144 (22%), Positives = 66/144 (45%), Gaps = 26/144 (18%)

Query: 117 RKKVAAFINASDSG-----EIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
           R+ +A ++           EIV T  A EA++L+  +     L  GDEV++         
Sbjct: 42  REAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRAL----LNPGDEVLV--------P 89

Query: 172 VP----WQLVAQKTGANLKFLNLNDDES--PDLDKLKEMLSRKTKLVVIHHISNMLASIL 225
            P    ++  A+  GA +  + L+++     DL+ L+   + KTKL+ +++ +N   ++L
Sbjct: 90  DPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVL 149

Query: 226 P---IEEIVHWSHDVGAKVLVDAC 246
               +EE+   +   G  ++ D  
Sbjct: 150 SEEELEELAELAKKHGILIISDEA 173

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350

>gnl|CDD|223476 COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 30/162 (18%), Positives = 63/162 (38%), Gaps = 23/162 (14%)

Query: 92  EAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGL 151
            A    V +            +E   +  A ++    +   V   + T A++L   +  +
Sbjct: 18  LAAVQEVLKSGWLTGGPFVRRFE---QAFAEYLGVKYA---VAVSSGTAALHLALLALAI 71

Query: 152 SNLKSGDEVI---LTVAEHHSAIVPWQLVAQKTGANLKFLNLN-DDESPDLDKLKEMLSR 207
                GDEVI    T     +A++         GA   F++++ D  + D D ++  ++ 
Sbjct: 72  ---GPGDEVIVPSFTFVATANAVL-------LVGAKPVFVDIDPDTLNIDPDLIEAAITP 121

Query: 208 KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSV 249
           +TK ++  H++     +  I  +   +   G  V+ DA Q+ 
Sbjct: 122 RTKAIIPVHLAGQPCDMDAIMAL---AKRHGLPVIEDAAQAH 160

Length = 374

>gnl|CDD|223699 COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 23/171 (13%)

Query: 154 LKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLV 212
           LK+GD V+L    +      ++ + QK G  + F++  DDE      L+  +    TKLV
Sbjct: 99  LKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDE-----ALEAAIKEPNTKLV 153

Query: 213 VIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLD--ADFLVASSHK 270
            +   SN L  +  I  I   +   GA V+VD   + P   V  + L+  AD +V S+ K
Sbjct: 154 FLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATP---VLQRPLELGADIVVHSATK 210

Query: 271 MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDH--STFADPPSRFEA 319
                   +L G SD+L  +   L   E + ++      +      S F+A
Sbjct: 211 --------YLGGHSDVLGGV--VLTPNEELYELLFFAQRANTGAVLSPFDA 251

Length = 396

>gnl|CDD|131135 TIGR02080, O_succ_thio_ly, O-succinylhomoserine (thiol)-lyase

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 24/158 (15%)

Query: 133 VFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLV---AQKTGANLKFLN 189
           V T     AI+L       + L   D   L VA H      ++L+   A+K    + F++
Sbjct: 70  VVTNTGMSAIHL----VTTALLGPDD---LLVAPHDCYGGTYRLLNALAKKGCFRVLFVD 122

Query: 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSV 249
             D+++     L+  L++K KLV+I   SN L  ++ I +I H +  VGA V+VD     
Sbjct: 123 QGDEQA-----LRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLS 177

Query: 250 PHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLL 287
           P  + +   L AD ++ S  K        +L G SD++
Sbjct: 178 P-ALQNPLALGADLVLHSCTK--------YLNGHSDVI 206

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine [Amino acid biosynthesis, Aspartate family]. Length = 382

>gnl|CDD|188462 TIGR03947, viomycin_VioD, capreomycidine synthase

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 13/134 (9%)

Query: 117 RKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQL 176
           R  +A      D+  ++ T  ++EAI LV  +     L+ GDEV++    +HS       
Sbjct: 57  RAAIADRWRGGDAHVVMTTHGSSEAIYLVLTAL----LRPGDEVVVVDPAYHSLSH---- 108

Query: 177 VAQKTGANLKFLNL--NDDESPDLDKLKEMLSRKTKLVVIHHISNML-ASILPIE--EIV 231
           +A  TG  ++   L       PDLD L+ +L+ +T+ VV++   N   AS+ P E  E++
Sbjct: 109 LAVATGCEVRPWPLLAVRGFRPDLDALRALLTPRTRAVVVNFPHNPTGASVTPRELDELL 168

Query: 232 HWSHDVGAKVLVDA 245
             +   GA +L D 
Sbjct: 169 ERAARSGAVLLWDN 182

Members of this family are the enzyme capreomycidine synthase, which performs the second of two steps in the biosynthesis of 2S,3R-capreomycidine from arginine. Capreomycidine is an unusual amino acid used by non-ribosomal peptide synthases (NRPS) to make the tuberactinomycin class of peptide antibiotic. The best characterized member is VioD from the biosynthetic pathway for viomycin [Cellular processes, Biosynthesis of natural products]. Length = 359

>gnl|CDD|188131 TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sulfhydrylase

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 10/119 (8%)

Query: 154 LKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVV 213
           L +GD V+ + +   S  V    +  + G    F++  D     L   +  L   TK V 
Sbjct: 90  LGAGDHVVASRSLFGSCFVVCSEILPRFGVQTVFVDGTD-----LSAWEAALKPNTKAVF 144

Query: 214 IHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLD--ADFLVASSHK 270
           +   SN L  ++ I  +   +H  GAKV+VD   + P   +  Q L   AD +V S+ K
Sbjct: 145 VETPSNPLQELVDIAAVAELAHAAGAKVVVDNVFATP---LLQQPLKLGADVVVYSATK 200

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis [Amino acid biosynthesis, Aspartate family]. Length = 381

>gnl|CDD|130395 TIGR01328, met_gam_lyase, methionine gamma-lyase

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 11/145 (7%)

Query: 146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEML 205
           A    +  LK+GD +I     +       +    K G  + F+N+   E      +K  +
Sbjct: 89  ATLLTI--LKAGDHLISDECLYGCTFALLEHALTKFGIQVDFINMAIPEE-----VKAHI 141

Query: 206 SRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLV 265
              TK+V     +N    ++ +E +   +H  G KV+VD   + P M+ +   L  D +V
Sbjct: 142 KDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATP-MLTNPVALGVDVVV 200

Query: 266 ASSHKMCGPTG---IGFLFGKSDLL 287
            S+ K  G  G    G + GK++LL
Sbjct: 201 HSATKYIGGHGDVVAGLICGKAELL 225

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine [Energy metabolism, Amino acids and amines]. Length = 391

>gnl|CDD|233359 TIGR01329, cysta_beta_ly_E, cystathionine beta-lyase, eukaryotic

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 14/111 (12%)

Query: 177 VAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHD 236
           V  ++G  +  ++  D     LDK+K  L  KTKLV++   +N L  I+ I +I   +H 
Sbjct: 105 VVPRSGVVVVHVDTTD-----LDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHA 159

Query: 237 VGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLL 287
             A V+VD     P +   ++ L AD +  S+ K        FL G SD++
Sbjct: 160 QNALVVVDNTMMSPLLCNPLE-LGADIVYHSATK--------FLAGHSDVM 201

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. Length = 378

>gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 15/136 (11%)

Query: 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVIL---TVAEH 167
            +Y   R  +A +    D   ++    + E I L+  ++    ++ GD V++   T + +
Sbjct: 57  PDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVRAF----VEPGDTVLIPEPTFSMY 112

Query: 168 HSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPI 227
                  ++ AQ  GA +  + L  +   DLD +   +  KTKLV + + +N   ++LP 
Sbjct: 113 -------EIAAQLAGAEVVKVPL-KEFRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPR 164

Query: 228 EEIVHWSHDVGAKVLV 243
           EE+      +    LV
Sbjct: 165 EELRALLEALPEGGLV 180

Length = 356

>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 42/203 (20%), Positives = 87/203 (42%), Gaps = 39/203 (19%)

Query: 113 YELARKKVAAF------INASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTV-- 164
            EL R+ +A        ++     EI+ T  A EA+ L      L+ L  GDEV++    
Sbjct: 68  PEL-REAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAF----LALLNPGDEVLIPDPG 122

Query: 165 -AEHHSAIVPWQLVAQKTGANLKFLNLNDDE---SPDLDKLKEMLSRKTKLVVIHHISNM 220
              + +A+     +A   G     + L+++E    PDL+ L+  ++ KTK ++++  +N 
Sbjct: 123 YPSYEAAV----KLA---GGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNP 175

Query: 221 LASILP---IEEIVHWSHDVGAKVLVDAC-------QSVPHMVVDVQGLDADFLVASS-- 268
             ++     ++ IV  + +    ++ D          +    ++++ G     +  +S  
Sbjct: 176 TGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFS 235

Query: 269 --HKMCGPTGIGFLFGKSDLLSA 289
             + M G   IG++ G  + L A
Sbjct: 236 KTYGMTG-WRIGWVVGPPEELIA 257

Length = 393

>gnl|CDD|99740 cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

 Score = 39.4 bits (93), Expect = 0.002
 Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 25/157 (15%)

Query: 98  VHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSG 157
           V             E+E   K  A ++        V   + T A+  +A       +  G
Sbjct: 8   VLDSGWLTLGPKVREFE---KAFAEYLGV---KYAVAVSSGTAAL-HLALR--ALGIGPG 58

Query: 158 DEVILT----VAEHHSAIVPWQLVAQKTGANLKFLNLN-DDESPDLDKLKEMLSRKTKLV 212
           DEVI+     VA   +A     L     GA   F++++ D  + D + ++  ++ +TK +
Sbjct: 59  DEVIVPSFTFVA---TANAILLL-----GATPVFVDIDPDTYNIDPELIEAAITPRTKAI 110

Query: 213 VIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSV 249
           +  H+    A +  I  I    H +   V+ DA Q++
Sbjct: 111 IPVHLYGNPADMDAIMAIAK-RHGL--PVIEDAAQAL 144

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein encoded by gene pglA, is a galactosyltransferase involved in pilin glycosylation. Additionally, this CD consists of ArnB (PmrH) aminotransferase, a 4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying enzyme. This CD also consists of several predicted pyridoxal phosphate-dependent enzymes apparently involved in regulation of cell wall biogenesis. The catalytic lysine which is present in all characterized PLP dependent enzymes is replaced by histidine in some members of this CD. Length = 352

>gnl|CDD|236298 PRK08574, PRK08574, cystathionine gamma-synthase; Provisional

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 9/121 (7%)

Query: 151 LSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEML-SRKT 209
            S LK+GD V+L +  + + +   + + +K G  +          P  + + E +   +T
Sbjct: 86  FSLLKAGDRVVLPMEAYGTTLRLLKSL-EKFGVKVVLA------YPSTEDIIEAIKEGRT 138

Query: 210 KLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH 269
           KLV I  ++N    ++ + E+   + ++GA ++VD   + P +   ++   ADF+V S  
Sbjct: 139 KLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYRPLR-HGADFVVHSLT 197

Query: 270 K 270
           K
Sbjct: 198 K 198

Length = 385

>gnl|CDD|236201 PRK08248, PRK08248, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 30/132 (22%), Positives = 63/132 (47%), Gaps = 7/132 (5%)

Query: 146 AYSWGLSNL-KSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEM 204
           A ++ + N+  +GDE++ + + +      +     K G  +KF+     +  D +  +  
Sbjct: 91  AITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFV-----DPSDPENFEAA 145

Query: 205 LSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFL 264
           ++ KTK +    I N    +L IE +   +H+ G  ++VD   + P+++  ++   AD +
Sbjct: 146 ITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYLLRPIE-HGADIV 204

Query: 265 VASSHKMCGPTG 276
           V S+ K  G  G
Sbjct: 205 VHSATKFIGGHG 216

Length = 431

>gnl|CDD|215134 PLN02242, PLN02242, methionine gamma-lyase

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 9/125 (7%)

Query: 179 QKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVG 238
           +K      F+++ D E+      K ++  KTK++    ISN   ++  I E+   +H+ G
Sbjct: 138 RKCNITTTFVDITDLEAVK----KAVVPGKTKVLYFESISNPTLTVADIPELARIAHEKG 193

Query: 239 AKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGI--GFLFGKSDLLSAMPPFLG 295
             V+VD   +   MV+    L AD +V S  K + G   I  G + G ++L+++M     
Sbjct: 194 VTVVVD--NTFAPMVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAELVNSMMDLHH 251

Query: 296 GGEMI 300
           G  M+
Sbjct: 252 GALML 256

Length = 418

>gnl|CDD|99744 cd06451, AGAT_like, Alanine-glyoxylate aminotransferase (AGAT) family

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 41/205 (20%), Positives = 74/205 (36%), Gaps = 19/205 (9%)

Query: 150 GLSNL-KSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRK 208
            LSNL + GD+V++ V         W  +A++ GA++  +     E+   +++ E L + 
Sbjct: 66  ALSNLLEPGDKVLVGVNGVFGDR--WADMAERYGADVDVVEKPWGEAVSPEEIAEALEQH 123

Query: 209 T-KLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVAS 267
             K V + H       + P+E I   +    A ++VDA  S+      +     D     
Sbjct: 124 DIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGGEPFRMDEWGVDVAYTG 183

Query: 268 SHKMCG-PTGIGFLF----GKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEA--G 320
           S K  G P G+G +         +     P           + D            +   
Sbjct: 184 SQKALGAPPGLGPIAFSERALERIKKKTKPKGF--------YFDLLLLLKYWGEGYSYPH 235

Query: 321 TPAIGEAIGLGAAIDYLSTIGMQKI 345
           TP +     L  A+D +   G++  
Sbjct: 236 TPPVNLLYALREALDLILEEGLENR 260

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. Length = 356

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	368
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	100.0
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	100.0
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	100.0
PRK10874	401	cysteine sulfinate desulfinase; Provisional	100.0
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	100.0
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	100.0
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	100.0
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	100.0
PLN02651	364	cysteine desulfurase	100.0
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	100.0
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	100.0
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	100.0
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	100.0
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	100.0
PLN02724	805	Molybdenum cofactor sulfurase	100.0
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	100.0
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	100.0
TIGR01814	406	kynureninase kynureninase. This model describes ky	100.0
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	100.0
PRK02948	381	cysteine desulfurase; Provisional	100.0
PRK14012	404	cysteine desulfurase; Provisional	100.0
PLN02409	401	serine--glyoxylate aminotransaminase	100.0
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.98
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.97
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.97
PRK02769	380	histidine decarboxylase; Provisional	99.97
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.97
PRK03080	378	phosphoserine aminotransferase; Provisional	99.97
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.97
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	99.97
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	99.97
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.97
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.97
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.96
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.96
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.96
PLN03032	374	serine decarboxylase; Provisional	99.96
COG3844	407	Kynureninase [Amino acid transport and metabolism]	99.96
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.96
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.96
PRK07681	399	aspartate aminotransferase; Provisional	99.95
PRK09105	370	putative aminotransferase; Provisional	99.95
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.95
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.95
PRK05957	389	aspartate aminotransferase; Provisional	99.95
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	99.95
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.95
PRK08960	387	hypothetical protein; Provisional	99.95
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.95
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.95
PRK06225	380	aspartate aminotransferase; Provisional	99.95
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.95
PRK06108	382	aspartate aminotransferase; Provisional	99.95
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.95
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.95
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.95
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	99.95
PRK01533	366	histidinol-phosphate aminotransferase; Validated	99.95
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.95
PLN00175	413	aminotransferase family protein; Provisional	99.95
PRK06207	405	aspartate aminotransferase; Provisional	99.95
PRK07324	373	transaminase; Validated	99.95
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	99.95
PRK06290	410	aspartate aminotransferase; Provisional	99.95
PLN02187	462	rooty/superroot1	99.94
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.94
PRK05942	394	aspartate aminotransferase; Provisional	99.94
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.94
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	99.94
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.94
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.94
PRK07682	378	hypothetical protein; Validated	99.94
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.94
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	99.94
PRK03321	352	putative aminotransferase; Provisional	99.94
PRK07366	388	succinyldiaminopimelate transaminase; Validated	99.94
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.94
PRK08068	389	transaminase; Reviewed	99.94
PRK12414	384	putative aminotransferase; Provisional	99.94
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.94
PRK06348	384	aspartate aminotransferase; Provisional	99.94
PRK07179	407	hypothetical protein; Provisional	99.94
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	99.94
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.94
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.94
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.94
PRK08361	391	aspartate aminotransferase; Provisional	99.94
PRK05764	393	aspartate aminotransferase; Provisional	99.94
PRK07337	388	aminotransferase; Validated	99.94
PTZ00433	412	tyrosine aminotransferase; Provisional	99.94
PLN02656	409	tyrosine transaminase	99.94
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.94
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.94
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.94
PRK08912	387	hypothetical protein; Provisional	99.94
PTZ00377	481	alanine aminotransferase; Provisional	99.93
PRK09082	386	methionine aminotransferase; Validated	99.93
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	99.93
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	99.93
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.93
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.93
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	99.93
PRK08363	398	alanine aminotransferase; Validated	99.93
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.93
PRK09148	405	aminotransferase; Validated	99.93
PRK07568	397	aspartate aminotransferase; Provisional	99.93
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.93
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	99.93
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.93
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	99.93
PRK07550	386	hypothetical protein; Provisional	99.93
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	99.93
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	99.93
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.93
PLN02452	365	phosphoserine transaminase	99.93
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.93
PRK06107	402	aspartate aminotransferase; Provisional	99.93
PRK07908	349	hypothetical protein; Provisional	99.93
PRK07777	387	aminotransferase; Validated	99.93
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.93
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	99.93
PLN02368	407	alanine transaminase	99.93
PRK07683	387	aminotransferase A; Validated	99.93
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	99.93
PRK09265	404	aminotransferase AlaT; Validated	99.93
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	99.93
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	99.92
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	99.92
PRK08636	403	aspartate aminotransferase; Provisional	99.92
PLN02822	481	serine palmitoyltransferase	99.92
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.92
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.92
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	99.92
PRK06358	354	threonine-phosphate decarboxylase; Provisional	99.92
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.92
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.92
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.92
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.91
PRK08175	395	aminotransferase; Validated	99.91
PRK06460	376	hypothetical protein; Provisional	99.91
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.91
PRK08249	398	cystathionine gamma-synthase; Provisional	99.91
PRK12462	364	phosphoserine aminotransferase; Provisional	99.91
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.91
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.91
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.91
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.91
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.91
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.91
PLN02231	534	alanine transaminase	99.91
PRK05839	374	hypothetical protein; Provisional	99.91
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.91
PRK05367	954	glycine dehydrogenase; Provisional	99.91
PRK07503	403	methionine gamma-lyase; Provisional	99.91
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.91
PRK09028	394	cystathionine beta-lyase; Provisional	99.91
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	99.91
PLN02483	489	serine palmitoyltransferase	99.91
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	99.91
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	99.91
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.91
PRK08776	405	cystathionine gamma-synthase; Provisional	99.91
PRK06855	433	aminotransferase; Validated	99.91
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.91
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	99.91
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.91
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.9
PRK13392	410	5-aminolevulinate synthase; Provisional	99.9
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	99.9
PRK06767	386	methionine gamma-lyase; Provisional	99.9
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	99.9
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	99.9
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	99.9
PRK08045	386	cystathionine gamma-synthase; Provisional	99.9
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	99.9
PRK06234	400	methionine gamma-lyase; Provisional	99.9
PLN02672	1082	methionine S-methyltransferase	99.9
PRK08861	388	cystathionine gamma-synthase; Provisional	99.9
PRK08354	311	putative aminotransferase; Provisional	99.9
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.9
PRK06836	394	aspartate aminotransferase; Provisional	99.9
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	99.9
PRK07811	388	cystathionine gamma-synthase; Provisional	99.9
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	99.9
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.9
PRK08064	390	cystathionine beta-lyase; Provisional	99.9
PRK09064	407	5-aminolevulinate synthase; Validated	99.9
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	99.89
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	99.89
PLN02263	470	serine decarboxylase	99.89
PLN02242	418	methionine gamma-lyase	99.89
PRK04311	464	selenocysteine synthase; Provisional	99.89
PLN02721	353	threonine aldolase	99.89
PRK08114	395	cystathionine beta-lyase; Provisional	99.89
PRK09257	396	aromatic amino acid aminotransferase; Provisional	99.89
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.89
PRK08574	385	cystathionine gamma-synthase; Provisional	99.89
PRK13393	406	5-aminolevulinate synthase; Provisional	99.89
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.89
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.89
PRK07050	394	cystathionine beta-lyase; Provisional	99.89
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	99.89
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.89
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.89
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	99.88
PRK08247	366	cystathionine gamma-synthase; Reviewed	99.88
PTZ00376	404	aspartate aminotransferase; Provisional	99.88
PLN02271	586	serine hydroxymethyltransferase	99.88
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.88
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	99.88
PRK09275	527	aspartate aminotransferase; Provisional	99.88
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	99.88
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.88
PRK05967	395	cystathionine beta-lyase; Provisional	99.88
PRK07671	377	cystathionine beta-lyase; Provisional	99.87
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.87
PRK05968	389	hypothetical protein; Provisional	99.87
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	99.87
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	99.87
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	99.87
PLN02509	464	cystathionine beta-lyase	99.87
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	99.87
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	99.87
PRK05939	397	hypothetical protein; Provisional	99.87
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	99.87
PLN02880	490	tyrosine decarboxylase	99.87
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.87
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	99.87
PRK07049	427	methionine gamma-lyase; Validated	99.87
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.87
PLN02590	539	probable tyrosine decarboxylase	99.87
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.86
PLN02955	476	8-amino-7-oxononanoate synthase	99.86
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.86
PRK07269	364	cystathionine gamma-synthase; Reviewed	99.86
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	99.86
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	99.86
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	99.86
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.85
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.85
PRK07582	366	cystathionine gamma-lyase; Validated	99.84
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.84
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.84
PRK07505	402	hypothetical protein; Provisional	99.84
PRK08637	388	hypothetical protein; Provisional	99.84
PRK05367	954	glycine dehydrogenase; Provisional	99.84
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.84
PRK10534	333	L-threonine aldolase; Provisional	99.84
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.83
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.83
KOG3846	465	consensus L-kynurenine hydrolase [Amino acid trans	99.83
PLN02397	423	aspartate transaminase	99.83
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	99.83
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	99.83
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	99.83
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.82
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.82
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.82
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.82
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	99.82
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.81
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.81
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	99.81
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	99.81
PRK12566	954	glycine dehydrogenase; Provisional	99.8
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.79
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.79
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.79
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.79
PRK02627	396	acetylornithine aminotransferase; Provisional	99.79
PRK06434	384	cystathionine gamma-lyase; Validated	99.79
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.77
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	99.77
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.77
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	99.77
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	99.76
PRK15029	755	arginine decarboxylase; Provisional	99.74
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.74
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	99.74
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.74
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	99.74
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.73
PRK04260	375	acetylornithine aminotransferase; Provisional	99.73
PLN02624	474	ornithine-delta-aminotransferase	99.73
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.73
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.72
PRK13578	720	ornithine decarboxylase; Provisional	99.71
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.7
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	99.7
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.69
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.68
KOG0633	375	consensus Histidinol phosphate aminotransferase [A	99.68
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.67
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	99.67
PLN00144	382	acetylornithine transaminase	99.67
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	99.67
KOG0634	472	consensus Aromatic amino acid aminotransferase and	99.67
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.67
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	99.67
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.66
KOG1368	384	consensus Threonine aldolase [Amino acid transport	99.66
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.66
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.66
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.66
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.65
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.65
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.65
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.64
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	99.64
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	99.64
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.64
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.63
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.63
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	99.62
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	99.62
PRK15400	714	lysine decarboxylase CadA; Provisional	99.62
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.61
PRK13237	460	tyrosine phenol-lyase; Provisional	99.61
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.61
PRK15399	713	lysine decarboxylase LdcC; Provisional	99.61
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.6
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	99.6
PRK06541	460	hypothetical protein; Provisional	99.6
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	99.6
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.6
PRK06062	451	hypothetical protein; Provisional	99.6
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.6
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.59
PRK07482	461	hypothetical protein; Provisional	99.59
PRK07046	453	aminotransferase; Validated	99.59
PRK06105	460	aminotransferase; Provisional	99.58
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.58
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	99.58
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	99.58
PRK07678	451	aminotransferase; Validated	99.57
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.57
PRK05965	459	hypothetical protein; Provisional	99.57
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	99.56
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.56
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.56
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	99.55
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	99.55
PRK12403	460	putative aminotransferase; Provisional	99.55
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	99.55
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	99.54
PRK07481	449	hypothetical protein; Provisional	99.54
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	99.53
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	99.53
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	99.53
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	99.53
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	99.53
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	99.53
PRK07483	443	hypothetical protein; Provisional	99.52
PRK07480	456	putative aminotransferase; Validated	99.51
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	99.5
PRK07036	466	hypothetical protein; Provisional	99.5
PRK06917	447	hypothetical protein; Provisional	99.5
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	99.5
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	99.49
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	99.48
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	99.47
PRK12566	954	glycine dehydrogenase; Provisional	99.47
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	99.47
KOG0258	475	consensus Alanine aminotransferase [Amino acid tra	99.47
KOG0629	510	consensus Glutamate decarboxylase and related prot	99.46
PRK06148	1013	hypothetical protein; Provisional	99.45
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	99.44
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	99.44
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	99.43
PRK06149	972	hypothetical protein; Provisional	99.43
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	99.41
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	99.41
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	99.41
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	99.4
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	99.36
PRK08297	443	L-lysine aminotransferase; Provisional	99.35
KOG1358	467	consensus Serine palmitoyltransferase [Posttransla	99.33
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	99.32
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	99.27
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	99.24
KOG2790	370	consensus Phosphoserine aminotransferase [Coenzyme	99.2
COG4100	416	Cystathionine beta-lyase family protein involved i	99.16
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	99.16
KOG0628	511	consensus Aromatic-L-amino-acid/L-histidine decarb	99.1
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	98.95
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	98.88
KOG1412	410	consensus Aspartate aminotransferase/Glutamic oxal	98.64
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	98.56
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	98.5
KOG1403	452	consensus Predicted alanine-glyoxylate aminotransf	98.48
PLN02994	153	1-aminocyclopropane-1-carboxylate synthase	98.21
KOG1411	427	consensus Aspartate aminotransferase/Glutamic oxal	98.19
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	97.77
KOG2142	728	consensus Molybdenum cofactor sulfurase [Coenzyme	97.55
KOG3843	432	consensus Predicted serine hydroxymethyltransferas	97.01
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	96.99
KOG2142	728	consensus Molybdenum cofactor sulfurase [Coenzyme	90.97
TIGR03573	343	WbuX N-acetyl sugar amidotransferase. This enzyme	82.71

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-50  Score=380.83  Aligned_cols=316  Identities=52%  Similarity=0.793  Sum_probs=297.0

Q ss_pred             hhhcCCCCcccccccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCC
Q 017640           49 HITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD  128 (368)
Q Consensus        49 ~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~  128 (368)
                      ..+|++||.+....  +.+.+|||+++.++.|..|.+++.+++..++.|++++.+..+....+.+++.|+.+++++|+++
T Consensus         6 ~~~r~~fp~l~~~~--~~~~vylD~aa~~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~   83 (405)
T COG0520           6 AAVRADFPALKREV--GKPLVYLDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADS   83 (405)
T ss_pred             HHHHhhCHHHhhcc--CCCeEEecCcccccCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            34889999885543  2568999999999999999999999999999999999999999999999999999999999996


Q ss_pred             CCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccC
Q 017640          129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRK  208 (368)
Q Consensus       129 ~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~  208 (368)
                      .++|+||.|+|+++++++.+++.. +++||+|++++.+|+++..+|..++++.|++++.+|+++++.++.+.++..++++
T Consensus        84 ~~eIvft~~tT~aln~va~~l~~~-~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~~i~~~  162 (405)
T COG0520          84 SDEIVFTRGTTEALNLVARGLGRS-LKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITPK  162 (405)
T ss_pred             CCeEEEeCChhHHHHHHHHHhhhh-hcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCCCCCcCHHHHHHhcCCC
Confidence            459999999999999999998432 7899999999999999999999999999999999999989999999999999999


Q ss_pred             ceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcC-cCCCCcceEEEEccccc
Q 017640          209 TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLL  287 (368)
Q Consensus       209 ~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~G~G~l~~~~~li  287 (368)
                      |++|.+++.+|.||.+.|+++|+++||++|+++++|++|+.|+.++|+.++++||+++|.|| ++||.|+|+++++++++
T Consensus       163 Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~idv~~l~~Df~afsgHKwl~gP~GiGvLy~r~~~l  242 (405)
T COG0520         163 TKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKELL  242 (405)
T ss_pred             ceEEEEECccccccccchHHHHHHHHHHcCCEEEEECccccCccCCCchhcCCCEEEEcccccccCCCceEEEEEchHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999 88999999999999999


Q ss_pred             ccCCCcccCCcceeeccc-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          288 SAMPPFLGGGEMISDVFL-DHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       288 ~~l~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      +.+.|...||+....+.. ....+.....+|+.||+++.+.+++.+++++++++|++.+.+|.++|.+++.+.|.+++++
T Consensus       243 ~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~~~v  322 (405)
T COG0520         243 EELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSELPGV  322 (405)
T ss_pred             hhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence            999999999999888776 5577788899999999999999999999999999999999999999999999999999886


Q ss_pred             C
Q 017640          367 T  367 (368)
Q Consensus       367 t  367 (368)
                      +
T Consensus       323 ~  323 (405)
T COG0520         323 E  323 (405)
T ss_pred             E
Confidence            5

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=100.00  E-value=3.6e-46  Score=358.43  Aligned_cols=323  Identities=78%  Similarity=1.158  Sum_probs=284.7

Q ss_pred             ccchhhhhcCCCCcccccccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHH
Q 017640           44 SVSLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAF  123 (368)
Q Consensus        44 ~~~~~~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~  123 (368)
                      +..|+..+|.+||.++.... +++.+|||+++.+++|+.+.+++.+++..+..+++.+.+..+....+.++++|+.++++
T Consensus        10 ~~~~~~~~r~~fp~~~~~~~-~~~~iyLd~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~   88 (424)
T PLN02855         10 SVSLGAETRPDFPILDQTVN-GSKLVYLDNAATSQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAF   88 (424)
T ss_pred             HHHHHHHHHHhCchhccccC-CCCeEEeeCccccCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHH
Confidence            34678889999998843211 24689999999999999999999999988877777666666666677889999999999


Q ss_pred             cCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHH
Q 017640          124 INASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKE  203 (368)
Q Consensus       124 ~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~  203 (368)
                      +|++++++|++|+|+|++++.++.++....+++||+|++++++|++.+..+..+++..|++++.+++++++.+|++++++
T Consensus        89 ~~~~~~~~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~~~~~~~l~~  168 (424)
T PLN02855         89 INASTSREIVFTRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDEVLDVEQLKE  168 (424)
T ss_pred             cCCCCCCEEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHH
Confidence            99975459999999999999999875332378999999999999999988999888999999999998778899999999


Q ss_pred             hcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEc
Q 017640          204 MLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGK  283 (368)
Q Consensus       204 ~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~  283 (368)
                      .+++++++|++++++|+||.++|+++|.++|+++|+++++|++|+.|..++++..+++|++++|+||++||+|+|+++++
T Consensus       169 ~i~~~t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~  248 (424)
T PLN02855        169 LLSEKTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMPVDVQTLGADFLVASSHKMCGPTGIGFLWGK  248 (424)
T ss_pred             HhccCceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCcCCCchhcCCCEEEeecccccCCCccEEEEEc
Confidence            99999999999999999999999999999999999999999999999998888888999999999999999999999999


Q ss_pred             ccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          284 SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       284 ~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +++++.++|+..||+.....+.+...+.+.+.||+.||+++.+++++..+++++.++|++++++|+.++.+++++.|.++
T Consensus       249 ~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~  328 (424)
T PLN02855        249 SDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSSV  328 (424)
T ss_pred             hhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999988777765544444445556678999999999999999999999999999999999999999999999888


Q ss_pred             cCCC
Q 017640          364 HNTT  367 (368)
Q Consensus       364 ~g~t  367 (368)
                      +|++
T Consensus       329 ~g~~  332 (424)
T PLN02855        329 PGVR  332 (424)
T ss_pred             CCEE
Confidence            7754

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=100.00  E-value=5.9e-46  Score=355.08  Aligned_cols=318  Identities=47%  Similarity=0.785  Sum_probs=279.0

Q ss_pred             hhhcCCCCcccccccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCC
Q 017640           49 HITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD  128 (368)
Q Consensus        49 ~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~  128 (368)
                      +.+|++||.+..... +.+++|||+++.+++|+.+++++.+++.....+++.+.+..+....+.++++|+.+++++|+.+
T Consensus         6 ~~~r~~fp~~~~~~~-~~~~iYld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~   84 (406)
T PRK09295          6 EKVRADFPVLSREVN-GLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARS   84 (406)
T ss_pred             HHHHhhCccccCcCC-CCceEEEeCcccccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCC
Confidence            457899999853211 2368999999999999999999999998877777766777777788899999999999999854


Q ss_pred             CCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccC
Q 017640          129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRK  208 (368)
Q Consensus       129 ~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~  208 (368)
                      +++|+||+|+|++++.++.++....+++||+|++++++|++.+..|...++..|++++.++.++++.+|+++|+++++++
T Consensus        85 ~~~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~  164 (406)
T PRK09295         85 AEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPALFDER  164 (406)
T ss_pred             CCeEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCCCHHHHHHhcCCC
Confidence            45999999999999999987633237899999999999999998899888889999999999888889999999999999


Q ss_pred             ceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEcccccc
Q 017640          209 TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLS  288 (368)
Q Consensus       209 ~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~  288 (368)
                      +++|++++++|+||.++|+++|.++|+++|+++++|++|+.|..++++..+++|++++|+||++||.|+|++++++++++
T Consensus       165 t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G~G~l~~~~~~~~  244 (406)
T PRK09295        165 TRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQ  244 (406)
T ss_pred             cEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCccccCchhcCCCEEEeehhhccCCCCcEEEEEchHhHh
Confidence            99999999999999999999999999999999999999999999999888899999999999999999999999999998


Q ss_pred             cCCCcccCCcceeeccc-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          289 AMPPFLGGGEMISDVFL-DHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       289 ~l~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      .++|...|++....... ....+.+...||+.||+++.+++++.++++++.+.|++.+++|.+++.+++.+.|.+++|++
T Consensus       245 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~  324 (406)
T PRK09295        245 EMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQLESVPDLT  324 (406)
T ss_pred             hCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence            88887766554332221 23445566789999999999999999999999999999999999999999999999887754

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=100.00  E-value=4.1e-45  Score=348.93  Aligned_cols=312  Identities=40%  Similarity=0.659  Sum_probs=276.1

Q ss_pred             hhhcCCCCcccccccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCC
Q 017640           49 HITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD  128 (368)
Q Consensus        49 ~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~  128 (368)
                      ..+|++||.+.      ++.+|||+++.+++|+.+.+++++++..+..+++.+.+..+..+.+.++++|+.+++++|+++
T Consensus         7 ~~~r~~fp~l~------~~~~yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~   80 (401)
T PRK10874          7 AQFRAQFPALQ------DAGVYLDSAATALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPD   80 (401)
T ss_pred             HHHHHhCCCcC------CceEEEeCCcccCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            56899999772      568999999999999999999999999888888776777777788999999999999999954


Q ss_pred             CCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccC
Q 017640          129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRK  208 (368)
Q Consensus       129 ~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~  208 (368)
                      +++|++|+|+|+++++++.++....+++||+|++++++|++.+..|...++..|++++.++.+.++.+|+++++++++++
T Consensus        81 ~~~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~  160 (401)
T PRK10874         81 AKNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPELITPR  160 (401)
T ss_pred             CCEEEEECCHHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCCCCcCCHHHHHHhcCcC
Confidence            45999999999999999998732236899999999999999988898888999999999999888889999999999999


Q ss_pred             ceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEcccccc
Q 017640          209 TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLS  288 (368)
Q Consensus       209 ~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~  288 (368)
                      +++|++++++|+||.+.|+++|.++|+++|+++++|++|+.+..++++...++|++++|+||+|||+|+|++++++++++
T Consensus       161 t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~  240 (401)
T PRK10874        161 TRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHFPADVQALDIDFYAFSGHKLYGPTGIGVLYGKSELLE  240 (401)
T ss_pred             cEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCcccccccCCchhcCCCEEEEecccccCCCccEEEEEchHHHh
Confidence            99999999999999999999999999999999999999999988888877889999999999999999999999999999


Q ss_pred             cCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          289 AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       289 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      .+.++..|+................+.+|+.||+|+.+++++..+++++.+.|..+++++..++++++.+.|.+++|+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~~~g~  318 (401)
T PRK10874        241 AMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLATLAEDALAKLPGF  318 (401)
T ss_pred             cCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence            998887655443222222233344668999999999999999999999999999999999999999999999988765

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=100.00  E-value=3.8e-45  Score=348.82  Aligned_cols=313  Identities=42%  Similarity=0.667  Sum_probs=273.8

Q ss_pred             hhhcCCCCcccccccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCC
Q 017640           49 HITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD  128 (368)
Q Consensus        49 ~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~  128 (368)
                      +.+|++||.+.      ++.+|||+++.+++|+.+.+++.+++.....+++.+.+..+....+.++++|+.+++++|+++
T Consensus         4 ~~~r~~fp~l~------~~~iyld~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~   77 (398)
T TIGR03392         4 AQFRQQFPALQ------DGTVYLDSAATALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPD   77 (398)
T ss_pred             hHHHHhCCccC------CCeEEeeCccccCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            45799999772      468999999999999999999999998777787766666667778889999999999999964


Q ss_pred             CCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccC
Q 017640          129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRK  208 (368)
Q Consensus       129 ~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~  208 (368)
                      +++|++|+|+|++++.++.++....+++||+|++++++|++.+..+...++..|++++.++.++++.+|++.++++++++
T Consensus        78 ~~~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~~~  157 (398)
T TIGR03392        78 AENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLTPR  157 (398)
T ss_pred             CCeEEEeCChHHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHHhccC
Confidence            45999999999999999998732226899999999999999888888888899999999999888889999999999999


Q ss_pred             ceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEcccccc
Q 017640          209 TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLS  288 (368)
Q Consensus       209 ~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~  288 (368)
                      +++|++++++||||.+.|+++|.++|+++|+++++|++|+.+..++++..+++|++++|+||++||.|+|++++++++++
T Consensus       158 t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~  237 (398)
T TIGR03392       158 TRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHGPPDVQALDIDFYAFSGHKLYGPTGIGVLYGKTELLE  237 (398)
T ss_pred             ceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCCCCChhhcCCCEEEEecccccCCCceEEEEEcHHHHh
Confidence            99999999999999999999999999999999999999999988888877889999999999999999999999999998


Q ss_pred             cCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          289 AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       289 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      .+.++..|+............+...+.+|+.||+++.+++++.++++++.+.|.++++++..++++++.+.|.+++|++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~l~g~~  316 (398)
T TIGR03392       238 AMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQLPGFR  316 (398)
T ss_pred             hCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence            8888765443322221222334456689999999999999999999999999999999999999999999999887753

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=100.00  E-value=8.7e-44  Score=340.12  Aligned_cols=317  Identities=57%  Similarity=0.934  Sum_probs=277.3

Q ss_pred             hhcCCCCcccccccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCC
Q 017640           50 ITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDS  129 (368)
Q Consensus        50 ~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~  129 (368)
                      .+|.+||.++.... +.+++|||+++.+++|+.+.+++.+++.....+++.+.+..+..+.+.++++|+.+++++|++++
T Consensus         2 ~~~~~f~~~~~~~~-~~~~~yld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~   80 (403)
T TIGR01979         2 NIRADFPILKRKIN-GKPLVYLDSAATSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASD   80 (403)
T ss_pred             chhhhCchhcCCCC-CCceEEEeCccccCCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCC
Confidence            46889998854322 45789999999999999999999999888777777655566666778899999999999999844


Q ss_pred             CcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCc
Q 017640          130 GEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKT  209 (368)
Q Consensus       130 ~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~  209 (368)
                      ++|++|+|+|+++.+++.++....+++||+|++++++|++....+..+++..|++++.++.++++.+|++++++++++++
T Consensus        81 ~~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~  160 (403)
T TIGR01979        81 EEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDDDGTLDLDDLEKLLTEKT  160 (403)
T ss_pred             CeEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCCCCCCCHHHHHHHhccCC
Confidence            59999999999999999876332367899999999999999888888888899999999999889999999999999999


Q ss_pred             eEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEccccccc
Q 017640          210 KLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSA  289 (368)
Q Consensus       210 ~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~  289 (368)
                      ++|++++++|+||.++|+++|.++|++||+++++|++|+.|..++++...++|++++|+||++||.|+|++++++++++.
T Consensus       161 ~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~g~l~~~~~~~~~  240 (403)
T TIGR01979       161 KLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVDVQALDCDFYVFSGHKMYGPTGIGVLYGKEELLEQ  240 (403)
T ss_pred             eEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCccccCccccCCCEEEEecccccCCCCceEEEEchHHHhc
Confidence            99999999999999999999999999999999999999999988888888999999999999999999999999999988


Q ss_pred             CCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          290 MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       290 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      ++|...||............+.....+|+.||+++.+++++..+++++.+.|.++++++..++++++.+.|.+++|++
T Consensus       241 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~  318 (403)
T TIGR01979       241 MPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGEIPGLR  318 (403)
T ss_pred             CCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence            988887776544332223344556678999999999999999999999999999999999999999999998877654

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=100.00  E-value=1.7e-42  Score=314.27  Aligned_cols=279  Identities=29%  Similarity=0.428  Sum_probs=258.1

Q ss_pred             eEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHH
Q 017640           68 LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAY  147 (368)
Q Consensus        68 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~  147 (368)
                      .||||+++.+++.+.+.+++..++...++||++ .|..|....+.+++.|+.+|+++|+++ ++|+||+|+||++++++.
T Consensus         2 miYlD~~ATTp~~~~v~~~m~~~~~~~fgNPsS-~H~~G~~A~~~ve~AR~~iA~llga~~-~eIiFTSG~TEsnNlaI~   79 (386)
T COG1104           2 MIYLDNAATTPVDPEVLEAMLPYLTEVFGNPSS-LHSFGREARKAVEEAREQIAKLLGADP-EEIIFTSGATESNNLAIK   79 (386)
T ss_pred             cccccccccCCCCHHHHHHHHHHHHhhcCCccc-hhHhHHHHHHHHHHHHHHHHHHhCCCC-CeEEEecCCcHHHHHHHH
Confidence            489999999999999999999999999999985 899999999999999999999999998 599999999999999999


Q ss_pred             H--ccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEccccccccccc
Q 017640          148 S--WGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASIL  225 (368)
Q Consensus       148 ~--~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~  225 (368)
                      +  +....-++|.+|+++..+|+++....+.+ +..|.+|.+++++.+|.+|+++|+++|+++|.+|.+.+.+|.+|.+.
T Consensus        80 g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~L-e~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQ  158 (386)
T COG1104          80 GAALAYRNAQKGKHIITSAIEHPAVLNTCRYL-ERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQ  158 (386)
T ss_pred             hhHHhhhcccCCCeEEEcccccHHHHHHHHHH-HhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecc
Confidence            8  32212246889999999999999998888 77899999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCcceeeccc
Q 017640          226 PIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFL  305 (368)
Q Consensus       226 ~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~  305 (368)
                      |+++|.++|+++|+++++|++|++|.+|+|+..++.|++++|.||++||.|+|++++++..  .+.|.+.||++      
T Consensus       159 pI~ei~~i~k~~~i~fHvDAvQa~Gkipi~~~~~~vD~ls~SaHK~~GpkGiGaLyv~~~~--~~~p~i~GGgQ------  230 (386)
T COG1104         159 PIAEIGEICKERGILFHVDAVQAVGKIPIDLEELGVDLLSFSAHKFGGPKGIGALYVRPGV--RLEPLIHGGGQ------  230 (386)
T ss_pred             cHHHHHHHHHHcCCeEEEehhhhcCceeccccccCcceEEeehhhccCCCceEEEEECCCC--ccCceeccCcC------
Confidence            9999999999999999999999999999999999999999999999999999999998877  78899999988      


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh-cCC
Q 017640          306 DHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER-HNT  366 (368)
Q Consensus       306 ~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~-~g~  366 (368)
                              ++.+.+||.|+++++++..|++...+ .++...++...|.+++.+.|.+. +++
T Consensus       231 --------E~g~RsGTenv~~Ivg~~~A~~~a~~-~~~~~~~~~~~lr~~l~~~l~~~~p~~  283 (386)
T COG1104         231 --------ERGLRSGTENVPGIVGFGKAAEIAVE-ELEEENARLRKLRDRLEDGLLEIIPDV  283 (386)
T ss_pred             --------CCCCCCCCccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCcE
Confidence                    36788999999999999999998777 47888899999999999999865 543

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=100.00  E-value=1.3e-42  Score=328.38  Aligned_cols=298  Identities=36%  Similarity=0.552  Sum_probs=265.9

Q ss_pred             EEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHH
Q 017640           69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS  148 (368)
Q Consensus        69 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~  148 (368)
                      ||||+++.+++|+.|++++.+++.....+++.+.+..+..+.+.++++|+.+++++|++++++|+|++|+|++++.++.+
T Consensus         1 iYld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~   80 (371)
T PF00266_consen    1 IYLDNAGTGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASS   80 (371)
T ss_dssp             EEEBTSSS-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHH
T ss_pred             CEeeCCCccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhc
Confidence            79999999999999999999999999999877777778888999999999999999999845999999999999999999


Q ss_pred             ccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHH
Q 017640          149 WGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIE  228 (368)
Q Consensus       149 ~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~  228 (368)
                      +.. .+++|++|++.+.+|++...++..++++.|++++.++.+.++.+|+++++++|++++++|++++.+|.||.+.|++
T Consensus        81 l~~-~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~pi~  159 (371)
T PF00266_consen   81 LLN-PLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALNPDTRLVSISHVENSTGVRNPIE  159 (371)
T ss_dssp             HHH-HGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHHTTESEEEEESBETTTTBBSSHH
T ss_pred             ccc-ccccccccccccccccccccccccccccchhhhccccccccchhhhhhhhhhhccccceEEeecccccccEEeeec
Confidence            732 1689999999999999999999999989999999999988899999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCcceeecccCCC
Q 017640          229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHS  308 (368)
Q Consensus       229 ~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~  308 (368)
                      +|.++||++|+++++|++|++|..++|++++++|++++|.||++||+|+|+++++++++++++|...||+..........
T Consensus       160 ~I~~~~~~~~~~~~vD~~~~~g~~~id~~~~~~D~~~~s~~Kl~gp~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~  239 (371)
T PF00266_consen  160 EIAKLAHEYGALLVVDAAQSAGCVPIDLDELGADFLVFSSHKLGGPPGLGFLYVRPEAIERLRPAKPGGGYLDFPSLQEY  239 (371)
T ss_dssp             HHHHHHHHTTSEEEEE-TTTTTTSS--TTTTTESEEEEESTSTTSSSTEEEEEEEHHHHHHHHTSSSSSSTTTHHHHHHH
T ss_pred             eehhhhhccCCceeEechhccccccccccccccceeeecccccCCCCchhhheehhhhhhccccccccccccccccchhc
Confidence            99999999999999999999999999999999999999999988999999999999999999988888875443333223


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          309 TFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       309 ~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      .+.....+|+.||+++..++++..+++++.+.|++++++|..++.+++.+.|.++++.+
T Consensus       240 ~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~  298 (371)
T PF00266_consen  240 GLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEELPGIE  298 (371)
T ss_dssp             CHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEE
T ss_pred             ccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCcee
Confidence            34456688999999999999999999999999999999999999999999999987643

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>PLN02651 cysteine desulfurase

Probab=100.00  E-value=7.6e-41  Score=315.34  Aligned_cols=282  Identities=28%  Similarity=0.351  Sum_probs=250.2

Q ss_pred             EEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHH
Q 017640           69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS  148 (368)
Q Consensus        69 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~  148 (368)
                      +|||+++.+++|+.+.+++.+++.....+|+.+.+..+..+.+.++++|+.+++++|++++ +|+||+|+|++++.++.+
T Consensus         1 iYld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~-~v~~t~~~t~a~~~~l~~   79 (364)
T PLN02651          1 LYLDMQATTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPK-EIIFTSGATESNNLAIKG   79 (364)
T ss_pred             CcccCcCCCCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEeCCHHHHHHHHHHH
Confidence            5999999999999999999999887777777545555666788899999999999999764 899999999999988776


Q ss_pred             ccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHH
Q 017640          149 WGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIE  228 (368)
Q Consensus       149 ~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~  228 (368)
                      +.....++||+|++.+.+|+++...+..+ +..|++++.++.++++.+|+++++++++++++++++++++|+||.+.|++
T Consensus        80 ~~~~~~~~g~~vl~~~~~h~s~~~~~~~~-~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~l~  158 (364)
T PLN02651         80 VMHFYKDKKKHVITTQTEHKCVLDSCRHL-QQEGFEVTYLPVKSDGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVE  158 (364)
T ss_pred             HHHhccCCCCEEEEcccccHHHHHHHHHH-HhcCCEEEEEccCCCCcCCHHHHHHhcCCCcEEEEEECCCCCceecccHH
Confidence            52222578999999999999988777665 46799999999988899999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCcceeecccCCC
Q 017640          229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHS  308 (368)
Q Consensus       229 ~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~  308 (368)
                      +|.++||+||+++++|++|+.|..++++..+++|++++|.||++||.|+|+++++++.+..+.|...||+.         
T Consensus       159 ~I~~~~~~~g~~~~vD~a~~~g~~~~~~~~~~~D~~~~s~hK~~gp~G~g~l~v~~~~~~~l~p~~~g~~~---------  229 (364)
T PLN02651        159 EIGELCREKKVLFHTDAAQAVGKIPVDVDDLGVDLMSISGHKIYGPKGVGALYVRRRPRVRLEPLMSGGGQ---------  229 (364)
T ss_pred             HHHHHHHHcCCEEEEEcchhhCCcccCcccCCCCEEEechhhhCCCCceEEEEEcCCCCCCCCccccCCCc---------
Confidence            99999999999999999999999999999999999999999998999999999999998889888877654         


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHh-hcCCC
Q 017640          309 TFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQE-RHNTT  367 (368)
Q Consensus       309 ~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~-~~g~t  367 (368)
                           +.+++.||+|+.+++++.++++++.+ +.+++++|.++|.+++.+.|.+ ++|++
T Consensus       230 -----~~~~~~GT~~~~~~~~l~~al~~~~~-~~~~i~~~~~~l~~~l~~~l~~~~~~~~  283 (364)
T PLN02651        230 -----ERGRRSGTENTPLVVGLGAACELAMK-EMDYDEKHMKALRERLLNGLRAKLGGVR  283 (364)
T ss_pred             -----cCCccCCCccHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhhCCCEE
Confidence                 24677999999999999999999997 4599999999999999999985 45654

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=100.00  E-value=1.4e-39  Score=308.05  Aligned_cols=295  Identities=56%  Similarity=0.881  Sum_probs=264.6

Q ss_pred             EEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHH
Q 017640           69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS  148 (368)
Q Consensus        69 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~  148 (368)
                      +|||+++.+++|+.+.+++++++.....+|+++.+..+....+...++|+.+++++|.++++++++|+|+|+++.+++.+
T Consensus         1 ~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~   80 (373)
T cd06453           1 VYLDNAATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYG   80 (373)
T ss_pred             CcccCccccCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHH
Confidence            59999999999999999999999888888877777777888899999999999999998445899999999999999999


Q ss_pred             ccCCCCC---CCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEccccccccccc
Q 017640          149 WGLSNLK---SGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASIL  225 (368)
Q Consensus       149 ~~~~~~~---~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~  225 (368)
                      +    ..   +||+|++++++|++.+..+...++..|++++.|+.+.++.+|++++++++.+++++|++++++||||.+.
T Consensus        81 l----~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~  156 (373)
T cd06453          81 L----GRANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDLEALEKLLTERTKLVAVTHVSNVLGTIN  156 (373)
T ss_pred             h----hhcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhcCCceEEEEeCcccccCCcC
Confidence            8    34   8999999999999988778888778899999999988888999999999998999999999999999999


Q ss_pred             CHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCcceeeccc
Q 017640          226 PIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFL  305 (368)
Q Consensus       226 ~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~  305 (368)
                      |+++|.++|++||+++++|++|+.+..++++...++|++++|+||+++++|+|++++++++++.+++...||........
T Consensus       157 ~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~g~g~~~~~~~~~~~~~~~~~g~~~~~~~~~  236 (373)
T cd06453         157 PVKEIGEIAHEAGVPVLVDGAQSAGHMPVDVQDLGCDFLAFSGHKMLGPTGIGVLYGKEELLEEMPPYGGGGEMIEEVSF  236 (373)
T ss_pred             CHHHHHHHHHHcCCEEEEEhhhhcCceeeeccccCCCEEEeccccccCCCCcEEEEEchHHhhcCCCeecCCCccccccc
Confidence            99999999999999999999999998888877788999999999998888899999999999999988777665444333


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          306 DHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       306 ~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      +...+.....+|+.||+++..++++..+++++.+.|++.+.++..++++++.+.+.++++++
T Consensus       237 ~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~  298 (373)
T cd06453         237 EETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVR  298 (373)
T ss_pred             cccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence            44556667778999999999999999999999999999999999999999999999887654

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=100.00  E-value=1.5e-39  Score=295.98  Aligned_cols=273  Identities=37%  Similarity=0.496  Sum_probs=239.3

Q ss_pred             CCCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHH
Q 017640           65 SKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL  144 (368)
Q Consensus        65 ~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~  144 (368)
                      +.+.+|||.++++++++.|.+++..++..++.|||..  ..+......+++.|+.+|+++|+++. +|+||+|+|+++++
T Consensus        41 ~~~~vyld~~at~p~~~~Vldam~~~~~~~~~nPh~~--~y~w~~~~~~E~aR~~VAklInAd~~-dIiFts~ATEs~Nl  117 (428)
T KOG1549|consen   41 GTRPVYLDNQATGPMDPRVLDAMLPYLLEYLGNPHSR--SYGWKAEDAVEAAREQVAKLINADPS-DIVFTSGATESNNL  117 (428)
T ss_pred             CCccEEEecCcCCCCCHHHHHHHHHHHHHhhcCCCcc--ccchhhhHHHHHHHHHHHHHhCCCCC-cEEEeCCchHHHHH
Confidence            4688999999999999999999999999999999975  34445566689999999999999987 59999999999999


Q ss_pred             HHHHccCCCCCCCC----EEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccc
Q 017640          145 VAYSWGLSNLKSGD----EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNM  220 (368)
Q Consensus       145 ~~~~~~~~~~~~gd----~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~  220 (368)
                      ++.++.   +..+|    +|++...+|+++...++.+ +..|.+++++|++.++.+|.+.+++.|+++|++|.+.+.+|.
T Consensus       118 vl~~v~---~~~~~~~~k~iitl~~eH~~v~~s~~~l-~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~  193 (428)
T KOG1549|consen  118 VLKGVA---RFFGDKTKKHIITLQTEHPCVLDSCRAL-QEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNE  193 (428)
T ss_pred             HHHHhh---ccccccccceEEEecccCcchhHHHHHH-HhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccC
Confidence            999995   44555    8999999999999988877 455899999999988999999999999999999999999999


Q ss_pred             cccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEccccccc--CCCcccCCc
Q 017640          221 LASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSA--MPPFLGGGE  298 (368)
Q Consensus       221 tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~--l~~~~~g~~  298 (368)
                      +|++.|++||.++|+++|+++++|+||+.|.+++|+.++++|+++.|.||+|||+|+|+++++++ ...  +.|.+.||+
T Consensus       194 ~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~i~vDV~eln~D~~s~s~HK~ygp~~iGaLYvr~~-~~~~~~~p~~~GGg  272 (428)
T KOG1549|consen  194 IGVLQPVKEIVKICREEGVQVHVDAAQAVGKIPVDVQELNADFLSISAHKIYGPPGIGALYVRRK-RPRLRVEPPLSGGG  272 (428)
T ss_pred             ccccccHHHHHHHhCcCCcEEEeehhhhcCCccccHHHcCchheeeecccccCCCcceEEEEccC-CCcccccCcccCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999982 233  347777777


Q ss_pred             ceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Q 017640          299 MISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVI  360 (368)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l  360 (368)
                      ..              +.++.||.+.+..+++..+.++..+. +..+..+..++...+...+
T Consensus       273 q~--------------r~~rsGT~~~~~~~~~gsA~e~~~~~-~~~~~~~~~~~~~~ll~~i  319 (428)
T KOG1549|consen  273 QE--------------RGLRSGTVATPLAVGLGSAAEFVNKE-MAYDEAIIKRLSEKLLMGI  319 (428)
T ss_pred             cc--------------cccccCCcCchhhhhhHHHHHHHHhh-cchhHHHHHHHHHHHHHHH
Confidence            74              67899999999999999999999885 3334444444555555555

>TIGR02006 IscS cysteine desulfurase IscS

Probab=100.00  E-value=3.3e-38  Score=301.12  Aligned_cols=282  Identities=27%  Similarity=0.346  Sum_probs=246.0

Q ss_pred             eEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHH
Q 017640           68 LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAY  147 (368)
Q Consensus        68 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~  147 (368)
                      .+|||+++.+++++.+++++.+++.....+++...+..+....+.++++|+.+++++|++++ +|+||+|+|++++.++.
T Consensus         4 ~~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~-~v~~~~g~t~a~~~~l~   82 (402)
T TIGR02006         4 PIYLDYAATTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSR-EIVFTSGATESNNLAIK   82 (402)
T ss_pred             cEEeeCCcCCCCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEeCCHHHHHHHHHH
Confidence            58999999999999999999998876667776444444445567889999999999999764 89999999999999987


Q ss_pred             HccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCH
Q 017640          148 SWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPI  227 (368)
Q Consensus       148 ~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l  227 (368)
                      ++.....++||+|+++.++|+++...+..+ +..|++++.++.++++.+|++.+++++++++++|++++++|+||.+.|+
T Consensus        83 ~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~-~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~v~~~~n~tG~~~~~  161 (402)
T TIGR02006        83 GIAHFYKSKGNHIITSKTEHKAVLDTCRYL-EREGFEVTYLPPKSNGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDI  161 (402)
T ss_pred             HHHHhhcCCCCEEEECCCccHHHHHHHHHH-HhcCCEEEEEccCCCCcCCHHHHHHhcCCCCEEEEEECCCcCceecccH
Confidence            762112468999999999999988776654 5569999999998889999999999999899999999999999999999


Q ss_pred             HHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCcceeecccCC
Q 017640          228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDH  307 (368)
Q Consensus       228 ~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~  307 (368)
                      ++|.++|+++|+++++|++|+.|..++++...++|++++|+||++||.|+|+++++++....+.|...|++.        
T Consensus       162 ~~I~~l~~~~g~~livD~a~a~g~~~~~~~~~~~D~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~g~~~--------  233 (402)
T TIGR02006       162 AAIGEICRERKVFFHVDAAQSVGKIPINVNELKVDLMSISGHKIYGPKGIGALYVRRKPRVRLEALIHGGGH--------  233 (402)
T ss_pred             HHHHHHHHHcCCEEEEEcchhcCCcccCccccCCCEEEEehhhhcCCCceEEEEEccCCCCCCCceecCCCc--------
Confidence            999999999999999999999999999998889999999999999999999999998877777777665443        


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          308 STFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       308 ~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                            ..+++.||+++..++++..++++++. +++.+.++..++.+++.+.|.+++++
T Consensus       234 ------~~~~~~gt~~~~~~~al~~al~~~~~-~~~~~~~~~~~l~~~l~~~l~~~~~v  285 (402)
T TIGR02006       234 ------ERGMRSGTLPTHQIVGMGEAFRIAKE-EMAQDTAHVLALRDRLLNGIKSIEEV  285 (402)
T ss_pred             ------cCCccCCCccHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence                  24678899999999999999999886 68899999999999999999887664

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=100.00  E-value=4.5e-38  Score=300.19  Aligned_cols=298  Identities=35%  Similarity=0.533  Sum_probs=254.4

Q ss_pred             hhhcCCCCcccccccCCCC-eEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC
Q 017640           49 HITRPDFPILHQEVYGSKK-LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS  127 (368)
Q Consensus        49 ~~~r~~f~~~~~~~~~~~~-~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~  127 (368)
                      +.+|.+||.+.      ++ .+|||+++.+++|+.+++++.+++.....++. +.+.......+..+++|+.+++++|++
T Consensus         4 ~~~r~~f~~~~------~~~~~yl~~~~~~~~p~~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~ia~~~~~~   76 (397)
T TIGR01976         4 EAVRGQFPALA------DGDRVFFDNPAGTQIPQSVADAVSAALTRSNANRG-GAYESSRRADQVVDDAREAVADLLNAD   76 (397)
T ss_pred             hHHHhhCCcCC------CCCeEEecCCccCCCCHHHHHHHHHHHHhcCCCCC-CCchHHHHHHHHHHHHHHHHHHHcCCC
Confidence            45789999872      33 69999999999999999999999877655543 233334455678899999999999998


Q ss_pred             CCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC-CCCCCHHHHHHhcc
Q 017640          128 DSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLS  206 (368)
Q Consensus       128 ~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~l~  206 (368)
                      ++ +|++++|+++++..++.++.. .+++||+|++.+++|++++..+...++..|++++.+++++ ++.+|+++++++++
T Consensus        77 ~~-~v~~~~~~t~~l~~~~~~~~~-~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~i~  154 (397)
T TIGR01976        77 PP-EVVFGANATSLTFLLSRAISR-RWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASLLS  154 (397)
T ss_pred             CC-eEEEeCCHHHHHHHHHHHHHh-cCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEeccccCCCcCHHHHHHhcC
Confidence            65 799999999999888777521 2689999999999999998888888888999999999875 68899999999999


Q ss_pred             cCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEcccc
Q 017640          207 RKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDL  286 (368)
Q Consensus       207 ~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~l  286 (368)
                      +++++|++++++|+||.+.|+++|.++|++||+++++|++|+.+..++++.++++|++++|+||++|+. +|++++++++
T Consensus       155 ~~~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~-~G~l~~~~~~  233 (397)
T TIGR01976       155 PRTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPHGLIDVQATGADFLTCSAYKFFGPH-MGILWGRPEL  233 (397)
T ss_pred             CCceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhccccCCCHHHcCCCEEEEechhhcCCc-eEEEEEcHHH
Confidence            899999999999999999999999999999999999999999888878887789999999999999875 8999999999


Q ss_pred             cccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC--------------HHHHHHHHHHH
Q 017640          287 LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG--------------MQKIHAYEVKW  352 (368)
Q Consensus       287 i~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g--------------~~~i~~~~~~l  352 (368)
                      ++.+.+....+           .+.....+|+.||+++..++++..+++++.+.|              .+.++++..++
T Consensus       234 ~~~l~~~~~~~-----------~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l  302 (397)
T TIGR01976       234 LMNLPPYKLTF-----------SYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRL  302 (397)
T ss_pred             HhhCCCccccC-----------ccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHH
Confidence            88887665322           123345689999999999999999999998876              67888999999


Q ss_pred             HHHHHHHHHhhcCCC
Q 017640          353 IICSIIVIQERHNTT  367 (368)
Q Consensus       353 ~~~l~~~l~~~~g~t  367 (368)
                      .+++++.|.++.+++
T Consensus       303 ~~~l~~~L~~~~~~~  317 (397)
T TIGR01976       303 AEYLLVGLSDLPGVT  317 (397)
T ss_pred             HHHHHHHHhcCCCEE
Confidence            999999998875543

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=100.00  E-value=7.3e-38  Score=296.60  Aligned_cols=291  Identities=31%  Similarity=0.489  Sum_probs=248.1

Q ss_pred             EEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHH
Q 017640           69 VYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAY  147 (368)
Q Consensus        69 i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~  147 (368)
                      +|||+++.+ ++|+.+.+++.+++..+..+++.+.+.......+..+++|+.+++++|++..++|++|+|+|+++.+++.
T Consensus         1 ~yld~a~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~   80 (376)
T TIGR01977         1 IYFDNAATTYPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALK   80 (376)
T ss_pred             CCccCcccCCCCCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHH
Confidence            599998877 7889999999999887654554433433344567888999999999999765589999999999999999


Q ss_pred             HccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCH
Q 017640          148 SWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPI  227 (368)
Q Consensus       148 ~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l  227 (368)
                      ++    +++||+|++.+++|+++...+..+++..|.+++.++.++++.+|++++++++++++++|++++++||||.++|+
T Consensus        81 ~~----~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~v~~~~~~n~tG~~~~~  156 (376)
T TIGR01977        81 GL----LKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIKTNTKLIVVSHASNVTGTILPI  156 (376)
T ss_pred             hc----cCCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhcCCCCeEEEEECCCCCccccCCH
Confidence            87    88999999999999998888888888889999999998888899999999999899999999999999999999


Q ss_pred             HHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCc-CCCCcceEEEEcccccccCCCcccCCcceeecccC
Q 017640          228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKM-CGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLD  306 (368)
Q Consensus       228 ~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~-~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~  306 (368)
                      ++|.++|+++|+++++|++|++|..++++...++|++++|+||+ +||.|+|+++++++.  .+++...++......  .
T Consensus       157 ~~i~~l~~~~~~~livD~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~p~g~g~l~~~~~~--~~~~~~~~~~~~~~~--~  232 (376)
T TIGR01977       157 EEIGELAQENGIFFILDAAQTAGVIPIDMTELAIDMLAFTGHKGLLGPQGTGGLYIREGI--KLKPLKSGGTGSHSA--L  232 (376)
T ss_pred             HHHHHHHHHcCCEEEEEhhhccCccCCCchhcCCCEEEecccccccCCCCceEEEEcCCc--CcCceecCCCccccc--c
Confidence            99999999999999999999999999998888999999999995 568899999998876  355655554322111  1


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          307 HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       307 ~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      +........||+.||++...++++..+++++.+.|.+++++|..++++++.+.|.+++|++
T Consensus       233 ~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~  293 (376)
T TIGR01977       233 IDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREINKVK  293 (376)
T ss_pred             ccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence            1111233468899999999999999999999999999999999999999999999887754

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>PLN02724 Molybdenum cofactor sulfurase

Probab=100.00  E-value=1.8e-38  Score=324.37  Aligned_cols=305  Identities=23%  Similarity=0.273  Sum_probs=253.3

Q ss_pred             hhhhc-CCCCcccccccCCCCeEEeccCCCCCCcH-HHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcC
Q 017640           48 GHITR-PDFPILHQEVYGSKKLVYLDNAATSQKPI-AVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN  125 (368)
Q Consensus        48 ~~~~r-~~f~~~~~~~~~~~~~i~l~~~~~~~~~~-~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~  125 (368)
                      .+.+| .+||.+       ++.+|||+++.+++++ .+.+++.+++...+.||+. .+..+....+.++++|+.+++++|
T Consensus        21 ~~~~R~~~fp~l-------~~~iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~s-~~~~s~~~~~~~e~aR~~ia~~lg   92 (805)
T PLN02724         21 IDELRATEFARL-------KGVVYLDHAGATLYSESQLEAALADFSSNVYGNPHS-QSDSSMRSSDTIESARQQVLEYFN   92 (805)
T ss_pred             HHHHHHHHhhhc-------CCCEeEeCCCCCCCCHHHHHHHHHHHHhhccCCCCc-CcchhhhHHHHHHHHHHHHHHHhC
Confidence            45567 689998       5689999999998665 5556666777778889884 566667778899999999999999


Q ss_pred             CCCCC-cEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC--------CCCCC
Q 017640          126 ASDSG-EIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--------DDESP  196 (368)
Q Consensus       126 ~~~~~-~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~--------~~~~~  196 (368)
                      +++++ +|+||+|+|+|+++++.++   .+++||+|+++..+|+++. .+..++++.|++++.++++        ..+.+
T Consensus        93 a~~~~~~VvFtsnaT~alnlva~~l---~~~~gd~Iv~t~~eH~svl-~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~  168 (805)
T PLN02724         93 APPSDYACVFTSGATAALKLVGETF---PWSSESHFCYTLENHNSVL-GIREYALEKGAAAIAVDIEEAANQPTNSQGSV  168 (805)
T ss_pred             CCccceEEEEeCChHHHHHHHHHHC---CCCCCCeEEEeeccccchH-HHHHHHHHcCCeEEeccchhcccccccccccc
Confidence            97664 6899999999999999998   4789999999988998877 5677778889999999886        33444


Q ss_pred             CH--HHHHHhc----------ccCceEEEEcccccccccccCHHHHHHHHHhc--------CCEEEEecCCcCCcccccC
Q 017640          197 DL--DKLKEML----------SRKTKLVVIHHISNMLASILPIEEIVHWSHDV--------GAKVLVDACQSVPHMVVDV  256 (368)
Q Consensus       197 d~--~~l~~~l----------~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~--------g~~li~D~a~~~~~~~~~~  256 (368)
                      ++  +.|++.+          .+++++|++++.+|.||.++|+++|..+++.+        ++++++|++|++|+.++|+
T Consensus       169 ~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~piDv  248 (805)
T PLN02724        169 VVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSPPDL  248 (805)
T ss_pred             ccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCCCCCh
Confidence            43  5566653          24568999999999999999999775555532        3689999999999999999


Q ss_pred             CCCCccEEEecCcCcCC-CCcceEEEEcccccccCCCcccCCcceeecccC--C-CCCCCCCCCCCCCCCCHHHHHHHHH
Q 017640          257 QGLDADFLVASSHKMCG-PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLD--H-STFADPPSRFEAGTPAIGEAIGLGA  332 (368)
Q Consensus       257 ~~~~~d~~~~s~~K~~g-~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~--~-~~~~~~~~~~~~gt~~~~~~~a~~~  332 (368)
                      .++++|++++|+||++| |.|+|+|++++++++.+.|...||+.+......  + ......+.||+.||+|+.+++++.+
T Consensus       249 ~~~~~Dfl~~S~HK~~GgP~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~a  328 (805)
T PLN02724        249 SRYPADFVVVSFYKIFGYPTGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRH  328 (805)
T ss_pred             hhcCCCEEEEecceeccCCCCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHH
Confidence            99999999999999988 889999999999999999988888765432211  1 1223356899999999999999999


Q ss_pred             HHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhc
Q 017640          333 AIDYLSTIGMQKIHAYEVKWIICSIIVIQERH  364 (368)
Q Consensus       333 al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~  364 (368)
                      +++++.++|++++++|...|.+++.+.|.+++
T Consensus       329 al~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~  360 (805)
T PLN02724        329 GFKLLNRLTISAIAMHTWALTHYVANSLRNLK  360 (805)
T ss_pred             HHHHHHHhChHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999875

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=100.00  E-value=2.9e-37  Score=292.72  Aligned_cols=277  Identities=27%  Similarity=0.404  Sum_probs=240.7

Q ss_pred             EEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHH
Q 017640           69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS  148 (368)
Q Consensus        69 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~  148 (368)
                      +|||+++.+++|+.+++++.+++.....+++. .+..+..+.+.++++|+.+++++|++++ +|+||+|+|++++.++.+
T Consensus         1 ~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~g~~~~-~i~~t~~~t~a~~~al~~   78 (379)
T TIGR03402         1 IYLDNNATTRVDPEVLEAMLPYFTEYFGNPSS-MHSFGGEVGKAVEEAREQVAKLLGAEPD-EIIFTSGGTESDNTAIKS   78 (379)
T ss_pred             CcCCCcCCCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEeCcHHHHHHHHHHH
Confidence            59999999999999999999998877777763 4555566788899999999999999864 899999999999999987


Q ss_pred             ccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHH
Q 017640          149 WGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIE  228 (368)
Q Consensus       149 ~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~  228 (368)
                      +.. ...+|++|++...+|+++...+..+ +..|++++.++.++++.+|+++++++++++++++++++++|+||.++|++
T Consensus        79 ~~~-~~~~~~~vv~~~~~~~s~~~~~~~~-~~~G~~v~~v~~~~~g~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~  156 (379)
T TIGR03402        79 ALA-AQPEKRHIITTAVEHPAVLSLCQHL-EKQGYKVTYLPVDEEGRLDLEELRAAITDDTALVSVMWANNETGTIFPIE  156 (379)
T ss_pred             HHH-hcCCCCeEEEcccccHHHHHHHHHH-HHcCCEEEEEccCCCCcCCHHHHHHhcCCCcEEEEEEcccCCeeecccHH
Confidence            511 1246789999999999987766655 45799999999988888999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCcceeecccCCC
Q 017640          229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHS  308 (368)
Q Consensus       229 ~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~  308 (368)
                      +|.++|++||+++++|++|+.|..++++..+++|++++|+||++||.|+|+++++++.  .+.|...|+..         
T Consensus       157 ~I~~l~~~~g~~vivD~~~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G~g~l~v~~~~--~~~p~~~g~~~---------  225 (379)
T TIGR03402       157 EIGEIAKERGALFHTDAVQAVGKIPIDLKEMNIDMLSLSGHKLHGPKGVGALYIRKGT--RFRPLLRGGHQ---------  225 (379)
T ss_pred             HHHHHHHHcCCEEEEECcccccccccCcccCCCCEEEEcHHHcCCCCceEEEEECCCC--CCCCcccCCcc---------
Confidence            9999999999999999999999999999889999999999999999999999999875  35666655432         


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHh-hcCC
Q 017640          309 TFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQE-RHNT  366 (368)
Q Consensus       309 ~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~-~~g~  366 (368)
                           ..+++.||+++..++++.++++++.+ .++.+.++..++.+++.+.|.+ +++.
T Consensus       226 -----~~~~~~gt~~~~~~~~l~~al~~~~~-~~~~~~~~~~~l~~~l~~~l~~~~~~~  278 (379)
T TIGR03402       226 -----ERGRRAGTENVPGIVGLGKAAELATE-HLEEENTRVRALRDRLEAGLLARIPDA  278 (379)
T ss_pred             -----CCCcCCCCccHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhhCCCE
Confidence                 13456899999999999999999987 5788899999999999999985 6654

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=100.00  E-value=2.3e-37  Score=290.65  Aligned_cols=280  Identities=27%  Similarity=0.351  Sum_probs=240.3

Q ss_pred             EeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHc
Q 017640           70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSW  149 (368)
Q Consensus        70 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~  149 (368)
                      |||+++.+++|+.+++++.+++.....+++...+..+....+.++++|+.+++++|++++ +|++|+|+|++++.++.++
T Consensus         1 yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~-~v~~~~g~t~a~~~~l~~l   79 (353)
T TIGR03235         1 YLDHNATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTE-EVIFTSGATESNNLAILGL   79 (353)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEeCCHHHHHHHHHHHH
Confidence            799999999999999999999876666665434444555677889999999999999765 8999999999999999877


Q ss_pred             cCCCCCCC-CEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHH
Q 017640          150 GLSNLKSG-DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIE  228 (368)
Q Consensus       150 ~~~~~~~g-d~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~  228 (368)
                      .....++| +.|++...+|+++...+..+ +..|++++.++.++++.+|++++++++++++++|++++++|+||.+.|++
T Consensus        80 ~~~~~~~g~~~vi~~~~~~~s~~~~~~~~-~~~G~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~  158 (353)
T TIGR03235        80 ARAGEQKGKKHIITSAIEHPAVLEPIRAL-ERNGFTVTYLPVDESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIR  158 (353)
T ss_pred             HHhcccCCCCeeeEcccccHHHHHHHHHH-HhcCCEEEEEccCCCCcCCHHHHHHhCCCCCEEEEEEcccCCceeccCHH
Confidence            21112355 78999999999988777655 56699999999988898999999999988999999999999999999999


Q ss_pred             HHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEccccccc--CCCcccCCcceeecccC
Q 017640          229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSA--MPPFLGGGEMISDVFLD  306 (368)
Q Consensus       229 ~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~--l~~~~~g~~~~~~~~~~  306 (368)
                      +|.++|+++|+++++|++|+.|..++++..+++|++++|+||++||+|+|+++++++.+..  ++|...+++.       
T Consensus       159 ~I~~l~~~~~~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~g~g~l~~~~~~~~~~~~~~~~~~~~~-------  231 (353)
T TIGR03235       159 EIAEVLEAHEAFFHVDAAQVVGKITVDLSADRIDLISCSGHKIYGPKGIGALVIRKRGKPKAPLKPIMFGGGQ-------  231 (353)
T ss_pred             HHHHHHHHcCCEEEEEchhhcCCccccccccCCCEEEeehhhcCCCCceEEEEEccCcccccccCceeeCCCC-------
Confidence            9999999999999999999999999999888999999999999999999999999986533  4455444322       


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          307 HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       307 ~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                             ..+++.||+++..++++.++++++.. +.+.++++.+++.+++++.|.+ +|++
T Consensus       232 -------~~~~~~gt~~~~~~~al~~al~~~~~-~~~~~~~~~~~l~~~l~~~l~~-~g~~  283 (353)
T TIGR03235       232 -------ERGLRPGTLPVHLIVGMGEAAEIARR-NAQAWEVKLRAMRNQLRDALQT-LGVK  283 (353)
T ss_pred             -------cCccccCCCChHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHhcc-CCeE
Confidence                   25788999999999999999998774 8899999999999999999987 6654

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>TIGR01814 kynureninase kynureninase

Probab=100.00  E-value=1.1e-36  Score=290.99  Aligned_cols=310  Identities=18%  Similarity=0.209  Sum_probs=244.4

Q ss_pred             ccchhhhhcCCCCcccccccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhh-HHHHHHHHHHHHHHHH
Q 017640           44 SVSLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLS-AKATDEYELARKKVAA  122 (368)
Q Consensus        44 ~~~~~~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~la~  122 (368)
                      ....+..+|++||......  +++.+|||+++.+++|+.+.+++.+++..+...+..+ +..+ ..+....+++++ + +
T Consensus         6 ~~~~~~~~r~~f~~~~~~~--~~~~iyld~~a~g~~p~~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~-~   80 (406)
T TIGR01814         6 EADPLRALRDEFHLPKIGD--ENAVIYLDGNSLGLMPKAARNALKEELDKWAKIAIRG-HNTGKAPWFTLDESLLK-L-R   80 (406)
T ss_pred             ccChHHHHHHhcCCCcccC--CCCcEEecCCCcCcCcHHHHHHHHHHHHHHHHhhhcc-CccCCCChhhhhhhhcc-c-c
Confidence            3456777899999762211  1568999999999889999999999887765443322 2211 122333344444 5 8


Q ss_pred             HcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCC---CEEEEcCCCCcccHHHHHHHHHHcCCEE----EEEeCCCCCC
Q 017640          123 FINASDSGEIVFTKNATEAINLVAYSWGLSNLKSG---DEVILTVAEHHSAIVPWQLVAQKTGANL----KFLNLNDDES  195 (368)
Q Consensus       123 ~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~g---d~vl~~~~~~~s~~~~~~~~~~~~g~~v----~~v~~~~~~~  195 (368)
                      ++|++++ +|+||+|+|++++.++.++    ++++   +.|++.+.+|+++...+...+++.|+++    +.++.+.++.
T Consensus        81 l~g~~~~-~v~~~~~~t~~l~~~~~~~----~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~  155 (406)
T TIGR01814        81 LVGAKED-EVVVMNTLTINLHLLLASF----YKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPREEET  155 (406)
T ss_pred             ccCCCCC-cEEEeCCchHHHHHHHHHh----cCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCCCCc
Confidence            9999764 9999999999999999987    4443   4788888999999888887777888887    5666666688


Q ss_pred             CCHHHHHHhcc---cCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCc-
Q 017640          196 PDLDKLKEMLS---RKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKM-  271 (368)
Q Consensus       196 ~d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~-  271 (368)
                      +|++.+++.++   +++++|++++++|.||.+.|+++|.++||++|+++++|++|++|..++++..+++|++++|+||+ 
T Consensus       156 ~~~~~l~~~~~~~~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id~~~~gvD~~~~s~hK~l  235 (406)
T TIGR01814       156 LRLEDILDTIEKNGDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLDLHDWGVDFACWCTYKYL  235 (406)
T ss_pred             cCHHHHHHHHHhcCCCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCcccccccCCCCEEEEcCcccc
Confidence            89999988774   68999999999999999999999999999999999999999999999999889999999999995 


Q ss_pred             CCCCcceEEEEcccccccCCCcccCCcceeecc--cCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH
Q 017640          272 CGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVF--LDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYE  349 (368)
Q Consensus       272 ~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~  349 (368)
                      +||+| |.++++++.+..+.|...||......+  .....+...+.+|+.||+|+..++++.++++++.+.|+++++++.
T Consensus       236 ~g~pG-~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~  314 (406)
T TIGR01814       236 NAGPG-AGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRKKS  314 (406)
T ss_pred             CCCCC-eEEEEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            46778 767776665656777777765432221  111122233468899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhc
Q 017640          350 VKWIICSIIVIQERH  364 (368)
Q Consensus       350 ~~l~~~l~~~l~~~~  364 (368)
                      .++.+++.+.+.+.+
T Consensus       315 ~~l~~~l~~~l~~~~  329 (406)
T TIGR01814       315 LLLTDYLEELIKARC  329 (406)
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999999998753

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=100.00  E-value=1.9e-36  Score=287.45  Aligned_cols=280  Identities=25%  Similarity=0.338  Sum_probs=239.3

Q ss_pred             EEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHH
Q 017640           69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS  148 (368)
Q Consensus        69 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~  148 (368)
                      +|||+++.+++++.|++++.+++...+.||+ +.+..+....+.+++.++.+++.+++.++++|++|+|+|+++..++.+
T Consensus         1 ~yld~aa~~~~~~~v~~~~~~~~~~~~~n~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~   79 (382)
T TIGR03403         1 VYLDNNATTMLDPKVKELMDPFFCDIYGNPN-SLHQFGTATHPAIAEALDKLYKGINARDLDDIIITSCATESNNWVLKG   79 (382)
T ss_pred             CcccCcCCCCCCHHHHHHHHHHHHhcCcCCc-cccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHH
Confidence            5999999999999999999999998888887 455555556677778888888888874345999999999999999987


Q ss_pred             ccCCC-CCC-CCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccC
Q 017640          149 WGLSN-LKS-GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILP  226 (368)
Q Consensus       149 ~~~~~-~~~-gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~  226 (368)
                      +.+.. .++ +++|+++..+|+++...+. .++..|++++.++.++++.+|++.++++++++++++++++++||||.++|
T Consensus        80 ~~~~~~~~~~~~~vi~~~~e~ps~~~~~~-~~~~~G~~v~~v~~~~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~  158 (382)
T TIGR03403        80 VYFDEILKGGKNHIITTEVEHPAVRATCA-FLESLGVEVTYLPINEQGTITAEQVREAITEKTALVSVMWANNETGMIFP  158 (382)
T ss_pred             HHHhhcccCCCCEEEEcCCccHHHHHHHH-HHHHCCCEEEEEecCCCCCCCHHHHHHhcccCCeEEEEEcccCCCccccC
Confidence            62111 245 5789999999999887665 44678999999999888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCcceeecccC
Q 017640          227 IEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLD  306 (368)
Q Consensus       227 l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~  306 (368)
                      +++|.++|+++|+++++|++|+.|..++++..+++|++++|+||++||+|+|+++++++.  .+.|.+.|+...      
T Consensus       159 ~~~I~~la~~~g~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G~g~l~vr~~~--~~~p~~~g~~~~------  230 (382)
T TIGR03403       159 IKEIGEICKERGVLFHTDAVQAIGKIPVDVQKAGVDFLSFSAHKFHGPKGVGGLYIRKGV--ELTPLFHGGEHM------  230 (382)
T ss_pred             HHHHHHHHHHcCCEEEEechhhcCCCccCccccCCCEEEEcchhhCCCCceEEEEECCCC--CCCCcccCCCCC------
Confidence            999999999999999999999999998888888999999999999999999999999876  455665544321      


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          307 HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       307 ~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                              .+++.||+|+..++++..++++..+ .++.+.++..++++++.+.|.+++|++
T Consensus       231 --------~~~~~gt~~~~~~~al~~al~~~~~-~~~~~~~~~~~l~~~l~~~L~~~~~~~  282 (382)
T TIGR03403       231 --------GGRRSGTLNVPYIVAMGEAMRLANE-YLDFEKSHVRRLRDRLEDALLELPDVF  282 (382)
T ss_pred             --------CCcccCCcChHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence                    3456799999999999999998877 488889999999999999998877654

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>PRK02948 cysteine desulfurase; Provisional

Probab=100.00  E-value=4.4e-36  Score=284.83  Aligned_cols=276  Identities=23%  Similarity=0.283  Sum_probs=238.2

Q ss_pred             eEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHH
Q 017640           68 LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAY  147 (368)
Q Consensus        68 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~  147 (368)
                      ++|||+++.+++|+.+++++.+++.....+++ +.+..+....+.++++|+.+++++|.+++ +|++++|+|+++..++.
T Consensus         1 ~~yld~a~~~~~~~~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~la~~~g~~~~-~i~~~~g~t~a~~~~~~   78 (381)
T PRK02948          1 MIYLDYAATTPMSKEALQTYQKAASQYFGNES-SLHDIGGTASSLLQVCRKTFAEMIGGEEQ-GIYFTSGGTESNYLAIQ   78 (381)
T ss_pred             CEeccCCCCCCCCHHHHHHHHHHHHhcCCCCc-cccHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEeCcHHHHHHHHHH
Confidence            37999999999999999999999987777776 45666677788899999999999998764 99999999999999888


Q ss_pred             HccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCH
Q 017640          148 SWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPI  227 (368)
Q Consensus       148 ~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l  227 (368)
                      ++.....++|++|++...+|+++...+. .++..|++++.++.++++.+|+++|++++++++++|++++++||||.+.|+
T Consensus        79 ~~~~~~~~~g~~vv~~~~~h~s~~~~~~-~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~  157 (381)
T PRK02948         79 SLLNALPQNKKHIITTPMEHASIHSYFQ-SLESQGYTVTEIPVDKSGLIRLVDLERAITPDTVLASIQHANSEIGTIQPI  157 (381)
T ss_pred             HHHHhccCCCCEEEECCcccHHHHHHHH-HHHhCCCEEEEEeeCCCCCCCHHHHHHhcCCCCEEEEEECCcCCcEeehhH
Confidence            7721113678999999999999877665 456789999999998889999999999998899999999999999999999


Q ss_pred             HHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCcceeecccCC
Q 017640          228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDH  307 (368)
Q Consensus       228 ~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~  307 (368)
                      ++|.++|+++|+++++|++|++|..++++..++.|+++.|+||++||+|+|++++++++  .+.+...++.         
T Consensus       158 ~~I~~l~~~~~~~vivD~~~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~--~~~~~~~~~~---------  226 (381)
T PRK02948        158 AEIGALLKKYNVLFHSDCVQTFGKLPIDVFEMGIDSLSVSAHKIYGPKGVGAVYINPQV--RWKPVFPGTT---------  226 (381)
T ss_pred             HHHHHHHHHcCCEEEEEChhhccccccCcccCCCCEEEecHHhcCCCCcEEEEEEcCCC--CCCCcccCCC---------
Confidence            99999999999999999999999988888888999999999999999999999999875  2222222211         


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          308 STFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       308 ~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                           ...+|+.||++.++++++.++++.+.+ .++.++++..++.+++.+.|+++
T Consensus       227 -----~~~~~~~~t~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~  276 (381)
T PRK02948        227 -----HEKGFRPGTVNVPGIAAFLTAAENILK-NMQEESLRFKELRSYFLEQIQTL  276 (381)
T ss_pred             -----CCCCcCCCCccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcC
Confidence                 125678899999999999999998765 57889999999999999999876

>PRK14012 cysteine desulfurase; Provisional

Probab=100.00  E-value=4.5e-36  Score=286.65  Aligned_cols=282  Identities=26%  Similarity=0.341  Sum_probs=240.0

Q ss_pred             eEEeccCCCCCCcHHHHHHHHHHHH--HhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHH
Q 017640           68 LVYLDNAATSQKPIAVLKALQNYYE--AYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV  145 (368)
Q Consensus        68 ~i~l~~~~~~~~~~~v~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~  145 (368)
                      .+|||+++.+++|+.+.+++.+++.  ....+++...+..+....+.++++|+.+++++|++++ ++++++|+|++++++
T Consensus         4 ~iyld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~-~v~~~~g~t~al~~~   82 (404)
T PRK14012          4 PIYLDYSATTPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPR-EIVFTSGATESDNLA   82 (404)
T ss_pred             eEEecCcCCCCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcC-eEEEeCCHHHHHHHH
Confidence            5899999999999999999999887  4445655433333333457788999999999999764 899999999999999


Q ss_pred             HHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEccccccccccc
Q 017640          146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASIL  225 (368)
Q Consensus       146 ~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~  225 (368)
                      +.++.....++||+|++++++|+++...+..+ +..|++++.++.++++.+|++.|++++++++++|++++++|+||.+.
T Consensus        83 l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~-~~~g~~~~~v~~~~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~  161 (404)
T PRK14012         83 IKGAAHFYQKKGKHIITSKTEHKAVLDTCRQL-EREGFEVTYLDPQSNGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQ  161 (404)
T ss_pred             HHHHHHhhcCCCCEEEEecCccHHHHHHHHHH-HhCCCEEEEEccCCCCcCCHHHHHHhcCCCCEEEEEECcCCCccchh
Confidence            88762112478999999999999988776654 45699999999988899999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCcceeeccc
Q 017640          226 PIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFL  305 (368)
Q Consensus       226 ~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~  305 (368)
                      |+++|.++|+++|+++++|++|++|..++++...++|++++|+||.+||.|+|+++++++....+.|...|++.      
T Consensus       162 ~~~~I~~la~~~g~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~g~G~l~~~~~~~~~~~~~~~g~~~------  235 (404)
T PRK14012        162 DIAAIGEICRERGIIFHVDAAQSVGKVPIDLSKLKVDLMSFSAHKIYGPKGIGALYVRRKPRVRLEAQMHGGGH------  235 (404)
T ss_pred             hHHHHHHHHHHcCCEEEEEcchhcCCcccCcccCCCCEEEEehhhccCCCceEEEEEecCCCCCCCceecCCCc------
Confidence            99999999999999999999999999988888888999999999999998999999998876666666655442      


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          306 DHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       306 ~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                              ..+++.||+++..++++..++++.+. +...+.++.+++++++.+.|.+++++
T Consensus       236 --------~~~~~~gt~~~~~~~~l~~al~~~~~-~~~~~~~~~~~l~~~l~~~L~~~~~i  287 (404)
T PRK14012        236 --------ERGMRSGTLPTHQIVGMGEAARIAKE-EMATENERIRALRDRLWNGIKDIEEV  287 (404)
T ss_pred             --------cCCccCCCcCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence                    14577899999999999999998766 57778899999999999999876653

>PLN02409 serine--glyoxylate aminotransaminase

Probab=100.00  E-value=2.6e-33  Score=266.83  Aligned_cols=281  Identities=20%  Similarity=0.198  Sum_probs=230.5

Q ss_pred             CeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHH
Q 017640           67 KLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVA  146 (368)
Q Consensus        67 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~  146 (368)
                      +..+|...++...++.|++++.+...     .     ..+..+.+..+++++.+++++|.+.++.+++++++|+++..++
T Consensus         8 ~~~~l~~pGP~~~~~~V~~a~~~~~~-----~-----~~~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~   77 (401)
T PLN02409          8 GRNHLFVPGPVNIPERVLRAMNRPNE-----D-----HRSPAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESAL   77 (401)
T ss_pred             CCceeccCCCCCCCHHHHHHhcCCCC-----C-----CCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHH
Confidence            34577777888899999999865431     1     2245668889999999999999986557899999999999999


Q ss_pred             HHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc----CceEEEEcccccccc
Q 017640          147 YSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR----KTKLVVIHHISNMLA  222 (368)
Q Consensus       147 ~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~----~~~~v~~~~~~n~tG  222 (368)
                      ..+    +++||+|++.+++|++..  |...+++.|++++.++.++++.+|++++++++++    ++++|++++++|+||
T Consensus        78 ~~~----~~~Gd~Vlv~~~~~~~~~--~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG  151 (401)
T PLN02409         78 TNT----LSPGDKVVSFRIGQFSLL--WIDQMQRLNFDVDVVESPWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTG  151 (401)
T ss_pred             Hhc----CCCCCEEEEeCCCchhHH--HHHHHHHcCCceEEEECCCCCCCCHHHHHHHHhhCcCCCccEEEEEeeccccc
Confidence            877    899999999999998754  6677888899999999887666899999999985    789999999999999


Q ss_pred             cccCHHHHHHH--HHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcC-CCCcceEEEEcccccccCCCcccCCcc
Q 017640          223 SILPIEEIVHW--SHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMC-GPTGIGFLFGKSDLLSAMPPFLGGGEM  299 (368)
Q Consensus       223 ~~~~l~~i~~l--~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~-g~~G~G~l~~~~~li~~l~~~~~g~~~  299 (368)
                      .++|+++|.++  |+++|+++++|++|++|..+++++++++|++++|+||++ +|+|+|++++++++++.+.+.......
T Consensus       152 ~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~id~~~~~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~~~~~  231 (401)
T PLN02409        152 VTNDLAGVRKLLDCAQHPALLLVDGVSSIGALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPRVF  231 (401)
T ss_pred             ccCCHHHHHHHHhhhccCcEEEEEcccccCCccccccccCccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCCCCee
Confidence            99999999999  999999999999999999999999899999999999955 788999999999998877653221100


Q ss_pred             eeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          300 ISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      . + +.....+. ....+..+|+++..++++..+++++.+.|+++++++..++.+++.+.|.++ |++
T Consensus       232 ~-~-~~~~~~~~-~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~-g~~  295 (401)
T PLN02409        232 F-D-WADYLKFY-KLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAW-GLK  295 (401)
T ss_pred             c-C-HHHHHHHH-hcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCe
Confidence            0 0 00000010 012344669999999999999999999999999999999999999999875 654

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.98  E-value=1.5e-30  Score=244.81  Aligned_cols=273  Identities=18%  Similarity=0.176  Sum_probs=219.4

Q ss_pred             CCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCC
Q 017640           74 AATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSN  153 (368)
Q Consensus        74 ~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~  153 (368)
                      ++..+.|+.+.+++.+....          ..+....+..+++++.+++++|+++++.+++++|+|+++..++.++    
T Consensus         5 ~~~~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~----   70 (356)
T cd06451           5 PGPSNVPPRVLKAMNRPMLG----------HRSPEFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNL----   70 (356)
T ss_pred             CCCcCCCHHHHHHhCCCccC----------CCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHh----
Confidence            44557788998888644211          1223456778899999999999965546789999999999999988    


Q ss_pred             CCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc-CceEEEEcccccccccccCHHHHHH
Q 017640          154 LKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASILPIEEIVH  232 (368)
Q Consensus       154 ~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~l~~i~~  232 (368)
                      +++||+|++..++|++..  +...++..|++++.++.++++.+|++++++.+++ ++++|++++++|++|.+.|+++|.+
T Consensus        71 ~~~g~~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~~~~i~~  148 (356)
T cd06451          71 LEPGDKVLVGVNGVFGDR--WADMAERYGADVDVVEKPWGEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEGIGA  148 (356)
T ss_pred             CCCCCEEEEecCCchhHH--HHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhccCCCEEEEeccCCCcccccCHHHHHH
Confidence            789999999998887732  4456677899999999988788999999999987 8999999999999999999999999


Q ss_pred             HHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCC-CCcceEEEEcccccccCCC--cccCCcceeecccCCCC
Q 017640          233 WSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCG-PTGIGFLFGKSDLLSAMPP--FLGGGEMISDVFLDHST  309 (368)
Q Consensus       233 l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g-~~G~G~l~~~~~li~~l~~--~~~g~~~~~~~~~~~~~  309 (368)
                      +|+++|+++++|++|++|..++++...+.|++++|+||+++ |.|+|++++++++++.+.+  ...++......   ...
T Consensus       149 ~a~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  225 (356)
T cd06451         149 LAKKHDALLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKGFYFDLLL---LLK  225 (356)
T ss_pred             HHHhcCCEEEEeeehhccCccccccccCccEEEecCchhccCCCCcceeEECHHHHHHHHhcCCCCceeecHHH---HHh
Confidence            99999999999999999988888777789999999999765 6689999999998877653  22221110000   000


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          310 FADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       310 ~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      +. ....+..+|+++..++++.++++++...|++.+.++.+++++++.+.|.++ |++
T Consensus       226 ~~-~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  281 (356)
T cd06451         226 YW-GEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEAL-GLK  281 (356)
T ss_pred             hh-cccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCe
Confidence            00 112367889999999999999999999899999999999999999999875 554

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.97  E-value=3.1e-30  Score=243.17  Aligned_cols=248  Identities=18%  Similarity=0.231  Sum_probs=198.8

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCC-CcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEE
Q 017640          107 AKATDEYELARKKVAAFINASDS-GEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANL  185 (368)
Q Consensus       107 ~~~~~~~~~~r~~la~~~~~~~~-~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v  185 (368)
                      ..+.+.++++|+.+++++|++++ +.|++|+|+|++++.++.++    ..+||.+++..+.+++..  +...++..|.++
T Consensus        31 ~~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l----~~~~~~vlv~~~~~~~~~--~~~~a~~~g~~~  104 (363)
T TIGR02326        31 SDYNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSA----VPKDGKLLVVINGAYGAR--IVQIAEYLGIPH  104 (363)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhc----CCCCCeEEEEeCChhhHH--HHHHHHHcCCce
Confidence            35678889999999999999753 36899999999999999988    677777666555444322  356677889999


Q ss_pred             EEEeCCCCCCCCHHHHHHhccc--CceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccE
Q 017640          186 KFLNLNDDESPDLDKLKEMLSR--KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADF  263 (368)
Q Consensus       186 ~~v~~~~~~~~d~~~l~~~l~~--~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~  263 (368)
                      +.++.++++.+|+++++++++.  +++++++++++|+||.+.|+++|.++||+||+++++|++|++|..++++..+++|+
T Consensus       105 ~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~~~~~~~~~~D~  184 (363)
T TIGR02326       105 HVVDTGEVEPPDVVEVEAILAADPAITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIPIDIAELHIDY  184 (363)
T ss_pred             EEEeCCCCCCCCHHHHHHHHhhCCCccEEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEccccccCcccchhhcCccE
Confidence            9999988888999999999875  45789999999999999999999999999999999999999999999998889999


Q ss_pred             EEecCcCc-CCCCcceEEEEcccccccCCCcccCCcceeecccCC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 017640          264 LVASSHKM-CGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDH--STFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI  340 (368)
Q Consensus       264 ~~~s~~K~-~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~  340 (368)
                      +++|+||+ +||+|+|++++++++++.+.+...+...  .....+  ....+...+|   |++...++++..+++.+...
T Consensus       185 ~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~f---t~~~~~~~al~~al~~l~~~  259 (363)
T TIGR02326       185 LISSANKCIQGVPGFGFVIARQAELAACKGNARSLSL--DLYDQWRCMEDNHGKWRF---TSPTHVVHAFAQALLELEKE  259 (363)
T ss_pred             EEecCccccccCCcceEEEECHHHHHHhhcCCCceee--cHHHHHHHHhccCCCCCC---CCcHHHHHHHHHHHHHHHHh
Confidence            99999995 5889999999999988766543221100  000000  1111222344   67899999999999988765


Q ss_pred             -CHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          341 -GMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       341 -g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                       +++.++++..++++++.+.|+++ |+
T Consensus       260 g~~~~~~~~~~~~~~~l~~~L~~~-g~  285 (363)
T TIGR02326       260 GGVAARHQRYQQNQKTLVAGMRAL-GF  285 (363)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence             68999999999999999999876 43

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.97  E-value=4.7e-30  Score=240.59  Aligned_cols=270  Identities=15%  Similarity=0.140  Sum_probs=211.1

Q ss_pred             CCCCCCcHHHHHHHHHHHHHhhccCCCCcchhh---HHHHHHHHHHHHHHHHHcCCCCCCcEEEeCC-HHHHHHHHHHHc
Q 017640           74 AATSQKPIAVLKALQNYYEAYNSNVHRGIHFLS---AKATDEYELARKKVAAFINASDSGEIVFTKN-ATEAINLVAYSW  149 (368)
Q Consensus        74 ~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g-~t~a~~~~~~~~  149 (368)
                      .++.+.|+.|++++.+++..+. +++++.+..+   ..+.+.++++|+.+++++|++.+++|+||+| +|++++.++.++
T Consensus         5 pGp~~~p~~V~~a~~~~~~~~~-~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l   83 (355)
T cd00611           5 AGPAALPEEVLEQAQKELLDFN-GLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNL   83 (355)
T ss_pred             CCCCCCCHHHHHHHHHHHhhcc-cCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhc
Confidence            4556889999999999998876 8888777777   4677899999999999999865568999977 999999999998


Q ss_pred             cCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCC-C-HHHHHHhcccCceEEEEcccccccccccCH
Q 017640          150 GLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESP-D-LDKLKEMLSRKTKLVVIHHISNMLASILPI  227 (368)
Q Consensus       150 ~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~-d-~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l  227 (368)
                      .. ..+++++|+...     ...-+..++++.|++++.++.++++.. + ++..+..+++++++|+++|.+|.||...+ 
T Consensus        84 ~~-~~~~~~~i~~g~-----~~~~~~~~a~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~lV~~~h~~t~tG~~~~-  156 (355)
T cd00611          84 LG-DKGTADYVVTGA-----WSAKAAKEAKRYGGVVVIVAAKEEGKYTKIPDVETWDLAPDAAYVHYCSNETIHGVEFD-  156 (355)
T ss_pred             CC-CCCeEEEEECCH-----HHHHHHHHHHhcCCCcEEEecccccCCCCCCCHhhcCCCCCCCEEEEeCCcccccEEcc-
Confidence            21 123666665422     222234467888999999998654322 4 33334456788999999999999999843 


Q ss_pred             HHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCcceeecccCC
Q 017640          228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDH  307 (368)
Q Consensus       228 ~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~  307 (368)
                          ++++.||+++++|++|++|+.++|+++++  +.++|.||++||+|+|++++++++++++.|......       ++
T Consensus       157 ----~i~~~~g~~~~VDa~qs~g~~~idv~~~~--~~~ss~~K~lGP~G~g~l~~~~~~~~~~~~~~~~~~-------~~  223 (355)
T cd00611         157 ----EVPDTGGVPLVADMSSNILSRPIDVSKFG--VIYAGAQKNLGPAGVTVVIVRKDLLGKARKITPSML-------NY  223 (355)
T ss_pred             ----eecccCCCeEEEEccccccCCCCCHHHhC--EEEeecccccCCCceEEEEECHHHHhhcccCCCCcc-------cH
Confidence                44556999999999999999999998765  466779999999999999999999988776532110       00


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          308 STFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       308 ~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~-g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      ....  ......||||+..++++.++++++.++ |++++++|.+++++++++.|.+++|+
T Consensus       224 ~~~~--~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl  281 (355)
T cd00611         224 KTHA--DNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGF  281 (355)
T ss_pred             HHHH--hcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            0000  011126899999999999999999999 79999999999999999999998774

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>PRK02769 histidine decarboxylase; Provisional

Probab=99.97  E-value=1e-29  Score=238.40  Aligned_cols=275  Identities=15%  Similarity=0.086  Sum_probs=219.8

Q ss_pred             EEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCC-cEEEeCCHHHHHHHHHH
Q 017640           69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSG-EIVFTKNATEAINLVAY  147 (368)
Q Consensus        69 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~-~v~~t~g~t~a~~~~~~  147 (368)
                      .|+.+......+....+.+..+.....++|.. .+..+....+..+++++.+++++|+++++ ..+||+|+|+++..++.
T Consensus        24 ~~~g~p~~~~~~~~~~~~~~~~~~~n~gnp~~-~~~~g~~~~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~  102 (380)
T PRK02769         24 FNVGYPEAADFDYSALKRFFSFSINNCGDPYS-KSNYPLNSFDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCY  102 (380)
T ss_pred             cccCCCchhhcCHHHHHHHHHhhhccCCCccc-cCCCCCChHHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHH
Confidence            46666666655555666666666555566653 44444556788889999999999998653 35899999999887776


Q ss_pred             HccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccC---ceEEEEcccccccccc
Q 017640          148 SWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRK---TKLVVIHHISNMLASI  224 (368)
Q Consensus       148 ~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~---~~~v~~~~~~n~tG~~  224 (368)
                      +.+  .+.++++|++++.+|+++..+    ++..|.+.+.|+.++++.+|+++|+++++++   |.+|++++++|+||.+
T Consensus       103 ~ar--~~~~~~~ii~s~~~H~Sv~ka----~~~lg~~~~~V~~~~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~i  176 (380)
T PRK02769        103 LAR--ELFPDGTLYYSKDTHYSVSKI----ARLLRIKSRVITSLPNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAI  176 (380)
T ss_pred             HHH--HhCCCcEEEeCCCceehHHHH----HHHcCCCCceeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCccc
Confidence            542  245788999999999996544    4555888888998889999999999999876   8999999999999999


Q ss_pred             cCHHHHHHHHHhcC---CEEEEecCCcCCccc-------ccCCCCCccEEEecCcCcCC-CCcceEEEEcccccccCCCc
Q 017640          225 LPIEEIVHWSHDVG---AKVLVDACQSVPHMV-------VDVQGLDADFLVASSHKMCG-PTGIGFLFGKSDLLSAMPPF  293 (368)
Q Consensus       225 ~~l~~i~~l~~~~g---~~li~D~a~~~~~~~-------~~~~~~~~d~~~~s~~K~~g-~~G~G~l~~~~~li~~l~~~  293 (368)
                      .|+++|.++|++||   +++++|++|+.+..+       +++.. ++|+++.|+||++| |.|+|+++++++.++.+.+.
T Consensus       177 dpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~-~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~~~~  255 (380)
T PRK02769        177 DNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFAD-GIDSIAISGHKFIGSPMPCGIVLAKKKYVERISVD  255 (380)
T ss_pred             CCHHHHHHHHHHhCCCceEEEEEecccceeecccCccccCCccC-CCCEEEECCcccCCCCCCcEEEEEehhhhhhcccC
Confidence            99999999999998   699999999988775       55555 89999999999876 99999999999877665431


Q ss_pred             ccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          294 LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       294 ~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      .      .+..        .......||++....+++..+++++...|.+++.+++.++++++.++|++. |+
T Consensus       256 ~------~yl~--------~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~~-g~  313 (380)
T PRK02769        256 V------DYIG--------SRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQAN-GI  313 (380)
T ss_pred             c------cccC--------CCCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC-CC
Confidence            1      0100        011234889999999999999999999999999999999999999999874 44

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.97  E-value=3.5e-29  Score=229.41  Aligned_cols=277  Identities=18%  Similarity=0.230  Sum_probs=231.3

Q ss_pred             EeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHc
Q 017640           70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSW  149 (368)
Q Consensus        70 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~  149 (368)
                      .|=..++...++.|+.++.+..          .+..+..+....+++.+.+...++.+..+.++++.++|.+++.++.++
T Consensus         7 ~Ll~PGP~~v~~~V~~am~~~~----------~~h~s~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl   76 (383)
T COG0075           7 LLLTPGPVPVPPRVLLAMARPM----------VGHRSPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASL   76 (383)
T ss_pred             eeeeCCCCCCCHHHHHHhcCCC----------CCCCCHHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhc
Confidence            3444556678888888875442          224567788999999999999999985446678889999999999998


Q ss_pred             cCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc--CceEEEEcccccccccccCH
Q 017640          150 GLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR--KTKLVVIHHISNMLASILPI  227 (368)
Q Consensus       150 ~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~--~~~~v~~~~~~n~tG~~~~l  227 (368)
                          ++|||+|++.....++..  |..+++++|++++.+...+...+|+++++++|++  +.++|.++|+.++||...|+
T Consensus        77 ----~~pgdkVLv~~nG~FG~R--~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl  150 (383)
T COG0075          77 ----VEPGDKVLVVVNGKFGER--FAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPL  150 (383)
T ss_pred             ----cCCCCeEEEEeCChHHHH--HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcH
Confidence                999999999988888765  8899999999999999998899999999999984  56899999999999999999


Q ss_pred             HHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCc-CCCCcceEEEEcccccccCCCcccCCcceeecccC
Q 017640          228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKM-CGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLD  306 (368)
Q Consensus       228 ~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~-~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~  306 (368)
                      ++|+++|++||.++|+|++.++|..++++++|+.|+++++.+|. -+|+|+|++.++++.++.+...... ++.-++. .
T Consensus       151 ~~I~~~~k~~g~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~-~~ylDL~-~  228 (383)
T COG0075         151 KEIAKAAKEHGALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHP-SFYLDLK-K  228 (383)
T ss_pred             HHHHHHHHHcCCEEEEEecccCCCcccchhhcCccEEEecCchhccCCCccceeEECHHHHHHHhcCCCC-ceeecHH-H
Confidence            99999999999999999999999999999999999999999995 5699999999999998887744332 1111111 1


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          307 HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       307 ~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      +..+.... +....||++..++++..+++.++++|+++..+|.+.+++++++.++++ |+
T Consensus       229 ~~~~~~~~-~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~al-Gl  286 (383)
T COG0075         229 WLKYMEKK-GSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEAL-GL  286 (383)
T ss_pred             HHHHHhhc-CCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence            11111111 344569999999999999999999999999999999999999999876 44

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.97  E-value=1.3e-29  Score=239.37  Aligned_cols=276  Identities=14%  Similarity=0.146  Sum_probs=215.7

Q ss_pred             CCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeC-CHHHHHHH
Q 017640           66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTK-NATEAINL  144 (368)
Q Consensus        66 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~-g~t~a~~~  144 (368)
                      +..+||+.+...+.+..|++++.+...   ...|     .+..+.+.++++|+.+++++|.+++++|+|++ |+|.+++.
T Consensus        11 ~~~~~f~~Gp~~~~~~~v~~a~~~~~~---~~~h-----r~~~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~   82 (378)
T PRK03080         11 PADPRFSSGPCKKRPGWQLEALADALL---GRSH-----RQKPVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEM   82 (378)
T ss_pred             CCCCCcCCCCcCCChHHHHHHHHhhhc---ccCc-----CCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHH
Confidence            456788888877777779999885532   1222     23467899999999999999997555898885 89999999


Q ss_pred             HHHHccCCCCCCCCEEEEcCCCCcccHHHHHH-HHHHcCC-EEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccc
Q 017640          145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQL-VAQKTGA-NLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLA  222 (368)
Q Consensus       145 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~-~~~~~g~-~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG  222 (368)
                      ++.++    +++++.+++.+.+|.+.   |.. ++++.|+ +++.++.++++.+|+++++    . ++.|+++|.+|.||
T Consensus        83 ~~~~l----~~~~~~~vi~~g~f~~~---~~~~~~~~~g~~~v~~~~~~~g~~~d~~~i~----~-~~~V~~~h~~t~tG  150 (378)
T PRK03080         83 ALWSL----LGARRVDHLAWESFGSK---WATDVVKQLKLEDPRVLEADYGSLPDLSAVD----F-DRDVVFTWNGTTTG  150 (378)
T ss_pred             HHHhc----CCCCcceEEEeCHHHHH---HHHHHHhhcCCCCceEeccCCCCCCCHhhcC----C-CCCEEEEecCCccc
Confidence            99998    66433344445666663   443 4466788 9999998877788877643    2 57799999999999


Q ss_pred             cccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcC-CCCcceEEEEcccccccCCCcccCCccee
Q 017640          223 SILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMC-GPTGIGFLFGKSDLLSAMPPFLGGGEMIS  301 (368)
Q Consensus       223 ~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~-g~~G~G~l~~~~~li~~l~~~~~g~~~~~  301 (368)
                      .+.|+++|++  ++||+++++|++|++|..++|+++  .|++++|.||++ ||+|+|++++++++++.+.|...||....
T Consensus       151 ~~~pi~~I~~--~~~g~~~vVDa~qs~G~~pidv~~--iD~~~~s~~K~l~~P~G~g~l~v~~~~~~~~~p~~~~~~~~~  226 (378)
T PRK03080        151 VRVPVARWIG--ADREGLTICDATSAAFALPLDWSK--LDVYTFSWQKVLGGEGGHGMAILSPRAVERLESYTPARPIPK  226 (378)
T ss_pred             eeccchhhcc--ccCCCeEEEecccccccCCCCHHH--CcEEEEehhhhCCCCCceEEEEECHHHHHhhhcccCCCCCch
Confidence            9999999999  889999999999999999999986  799999999965 68999999999999999988876664311


Q ss_pred             ecccCCCC-CCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          302 DVFLDHST-FADPPSRFE---AGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       302 ~~~~~~~~-~~~~~~~~~---~gt~~~~~~~a~~~al~~~~~~-g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                        +.+... +.....+++   .+|+++..++++..+++++.++ |++++++|.+++++++++++.++.+++
T Consensus       227 --~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~  295 (378)
T PRK03080        227 --FFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEKTPWAT  295 (378)
T ss_pred             --hheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence              111111 001122344   3568888888889999999998 899999999999999999999886644

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.97  E-value=7.7e-29  Score=235.27  Aligned_cols=274  Identities=19%  Similarity=0.176  Sum_probs=209.2

Q ss_pred             CeEEeccC-CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHH
Q 017640           67 KLVYLDNA-ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV  145 (368)
Q Consensus        67 ~~i~l~~~-~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~  145 (368)
                      .++++|.- -.|++++.++++++++...+ .++....+..+....+.++++|+.+|+++|++   ++++++|+++++..+
T Consensus        19 ~~~~~~~~~~~~p~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~---~~~~~~g~t~a~~~a   94 (387)
T PRK09331         19 EFINLDPIQRGGILTPEARKALIEYGDGY-SVCDYCPGRLDQIKKPPIADFHEDLAEFLGMD---EARVTHGAREGKFAV   94 (387)
T ss_pred             cccccChhhcCCCCCHHHHHHHHHHHhcc-CCCcccccccccccChHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHH
Confidence            44555543 35699999999999998543 34321123333444567889999999999985   578899999999999


Q ss_pred             HHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeC--CCCCCCCHHHHHHhccc-------CceEEEEcc
Q 017640          146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL--NDDESPDLDKLKEMLSR-------KTKLVVIHH  216 (368)
Q Consensus       146 ~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~--~~~~~~d~~~l~~~l~~-------~~~~v~~~~  216 (368)
                      +.++    +++||+|+++.++|++.+..    ++..|++++.++.  ++++.+|++.+++++++       ++++|++++
T Consensus        95 l~~l----~~~gd~Vlv~~~~h~s~~~~----~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~  166 (387)
T PRK09331         95 MHSL----CKKGDYVVLDGLAHYTSYVA----AERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTH  166 (387)
T ss_pred             HHHh----cCCCCEEEECCCchHHHHHH----HHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEEC
Confidence            9998    79999999999999997643    4567999999998  66788999999998863       689999999


Q ss_pred             cccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCC-CCcceEEEEcccccccCCCccc
Q 017640          217 ISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCG-PTGIGFLFGKSDLLSAMPPFLG  295 (368)
Q Consensus       217 ~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g-~~G~G~l~~~~~li~~l~~~~~  295 (368)
                      ++|+||.+.|+++|.++|++||+++++|++|+.|..+++...++.|++++|+||+++ ++|+|++++++++++.+.....
T Consensus       167 ~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~~~~~~~~g~D~~~~s~~K~l~~~~~~G~l~~~~~~i~~~~~~~~  246 (387)
T PRK09331        167 VDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRMPVDGKKLGADFIVGSGHKSMAASAPSGVLATTEEYADKVFRTSR  246 (387)
T ss_pred             CCCCCcccccHHHHHHHHHHcCCEEEEECCcccCCcCCCHHHcCCCEEEeeCcccccCCCCEEEEEECHHHHhhcccccC
Confidence            999999999999999999999999999999999998888888889999999999765 6679999999998887654321


Q ss_pred             CCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          296 GGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       296 g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      +...             ....+..++.+....+++..+++.+.+. .+ ..++..++++++.+.|.+++|++
T Consensus       247 ~~~~-------------~~~~~~~~~~~~~~~~~~~aal~~~~~~-~~-~~~~~~~~~~~l~~~L~~l~g~~  303 (387)
T PRK09331        247 KFGV-------------KEVELLGCTLRGAPLVTLMASFPHVVER-VK-RWDEEVKKARWFVDELEKIEGFK  303 (387)
T ss_pred             CCcc-------------cceeeeceecCchHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHhcCCCEE
Confidence            1100             0000112233334455556666655543 22 34555778889999999887754

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=99.97  E-value=3.5e-29  Score=225.50  Aligned_cols=263  Identities=20%  Similarity=0.181  Sum_probs=203.5

Q ss_pred             eccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC--CCCcEEEeCCHHHHHHHHHH
Q 017640           71 LDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS--DSGEIVFTKNATEAINLVAY  147 (368)
Q Consensus        71 l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~--~~~~v~~t~g~t~a~~~~~~  147 (368)
                      |+.+.+. ++|+.+.+++++.+.....    ..+..+++..++.+.+++++++++|..  ++++|++|.|+.+++..++.
T Consensus        36 LgqGfp~~~~P~fv~ea~~~~~~~~~~----~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~  111 (420)
T KOG0257|consen   36 LGQGFPDFPPPKFVTEAAKNAAKEPST----NQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALL  111 (420)
T ss_pred             ccCCCCCCCCcHHHHHHHHHHhccchh----ccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHH
Confidence            8999888 8899999999998876422    345666777899999999999988865  44589999999999999999


Q ss_pred             HccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC--------CCCCCCHHHHHHhcccCceEEEEccccc
Q 017640          148 SWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--------DDESPDLDKLKEMLSRKTKLVVIHHISN  219 (368)
Q Consensus       148 ~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~--------~~~~~d~~~l~~~l~~~~~~v~~~~~~n  219 (368)
                      ++    +++||+|++.+|.|.+    +....+..|.++++|+..        +++.+|.+++|.+++++|++|++++|||
T Consensus       112 ~l----~~~GDeVii~eP~fd~----Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~kTk~Ii~ntPhN  183 (420)
T KOG0257|consen  112 GL----LNPGDEVIVFEPFFDC----YIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITEKTKAIILNTPHN  183 (420)
T ss_pred             HH----cCCCCEEEEecCcchh----hhhHHhhcCCcceeeccccccccccCccccCChHHHHhhccCCccEEEEeCCCC
Confidence            98    9999999999996555    455556679999999987        3589999999999999999999999999


Q ss_pred             ccccccC---HHHHHHHHHhcCCEEEEecCCcC----Cc--ccc--cCCCCCccEEEecCcCcCCCCc--ceEEEEcccc
Q 017640          220 MLASILP---IEEIVHWSHDVGAKVLVDACQSV----PH--MVV--DVQGLDADFLVASSHKMCGPTG--IGFLFGKSDL  286 (368)
Q Consensus       220 ~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~----~~--~~~--~~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~l  286 (368)
                      |||.+++   |++|+++|++||+++|.|++|..    +.  ..+  ....+...+.++|++|.||..|  +||++.++.+
T Consensus       184 PtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWrlGW~igp~~L  263 (420)
T KOG0257|consen  184 PTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWRLGWAIGPKHL  263 (420)
T ss_pred             CcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeeeeeeeeeechHHh
Confidence            9999999   89999999999999999999873    21  222  1233468899999999999999  9999998777


Q ss_pred             cccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH----HhC---HHHHHHHHHHHHHHHHHH
Q 017640          287 LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS----TIG---MQKIHAYEVKWIICSIIV  359 (368)
Q Consensus       287 i~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~----~~g---~~~i~~~~~~l~~~l~~~  359 (368)
                      +..+++...                    ++.- +-+.+.+.|.+.++..-.    -.|   ...+.+..++.++.+.+.
T Consensus       264 ~~~~~~vh~--------------------~~~~-~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~  322 (420)
T KOG0257|consen  264 YSALFPVHQ--------------------NFVF-TCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKA  322 (420)
T ss_pred             hhhHHHHhh--------------------cccc-ccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHH
Confidence            776665432                    1111 222223333333333222    111   233667778888889998


Q ss_pred             HHhhcCCC
Q 017640          360 IQERHNTT  367 (368)
Q Consensus       360 l~~~~g~t  367 (368)
                      |.+. |++
T Consensus       323 L~~l-g~~  329 (420)
T KOG0257|consen  323 LEEL-GLK  329 (420)
T ss_pred             HHhc-CCc
Confidence            8887 654

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.97  E-value=6.3e-29  Score=234.29  Aligned_cols=267  Identities=19%  Similarity=0.243  Sum_probs=203.4

Q ss_pred             CeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC--CCCcEEEeCCHHHHHH
Q 017640           67 KLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS--DSGEIVFTKNATEAIN  143 (368)
Q Consensus        67 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~--~~~~v~~t~g~t~a~~  143 (368)
                      ++|.|+.+.+. +.|+.+.+++.+.+.....  +   +....+..++.+.+.+.+.+..|..  ++++|++|+|+++|+.
T Consensus        29 ~vi~l~iG~Pd~~~p~~i~~a~~~a~~~~~~--~---Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~  103 (393)
T COG0436          29 DVIDLSIGEPDFPTPEHIIEAAIEALEEGGT--H---YTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALF  103 (393)
T ss_pred             CEEEeCCCCCCCCCCHHHHHHHHHHHhcccC--C---CCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHH
Confidence            68999999997 7788899999988875321  1   1111222333334444444444432  4446999999999999


Q ss_pred             HHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC---CCCCCCHHHHHHhcccCceEEEEcccccc
Q 017640          144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN---DDESPDLDKLKEMLSRKTKLVVIHHISNM  220 (368)
Q Consensus       144 ~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~---~~~~~d~~~l~~~l~~~~~~v~~~~~~n~  220 (368)
                      .++.++    +++||+|++++|.|++    +....+..|++++.++++   .++.+|++.|+++++++||+|++++|+||
T Consensus       104 ~~~~a~----~~pGDeVlip~P~Y~~----y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~P~NP  175 (393)
T COG0436         104 LAFLAL----LNPGDEVLIPDPGYPS----YEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNP  175 (393)
T ss_pred             HHHHHh----cCCCCEEEEeCCCCcC----HHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCccceEEEEeCCCCC
Confidence            999999    9999999999998888    455556679999999975   37999999999999999999999999999


Q ss_pred             cccccC---HHHHHHHHHhcCCEEEEecCCcC----Cc--c-cccCCC-CCccEEEecCcCcCCCCc--ceEEEEc-ccc
Q 017640          221 LASILP---IEEIVHWSHDVGAKVLVDACQSV----PH--M-VVDVQG-LDADFLVASSHKMCGPTG--IGFLFGK-SDL  286 (368)
Q Consensus       221 tG~~~~---l~~i~~l~~~~g~~li~D~a~~~----~~--~-~~~~~~-~~~d~~~~s~~K~~g~~G--~G~l~~~-~~l  286 (368)
                      ||.+++   +++|+++|++||++||.|++|.-    +.  . .++... .+..+.+.|+||.|+.+|  +||++++ +++
T Consensus       176 TGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~~~~l  255 (393)
T COG0436         176 TGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPEEL  255 (393)
T ss_pred             cCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccceeEeecChHHH
Confidence            999999   88999999999999999999872    21  1 112222 256788889999999999  9999999 777


Q ss_pred             cccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHhhcC
Q 017640          287 LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST-IGMQKIHAYEVKWIICSIIVIQERHN  365 (368)
Q Consensus       287 i~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~-~g~~~i~~~~~~l~~~l~~~l~~~~g  365 (368)
                      ++.+.....                     ....+++...+.++..+|+.-+. ...+.+++..++.++.+.+.|.++.|
T Consensus       256 ~~~~~~~~~---------------------~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~g  314 (393)
T COG0436         256 IAALRKLKS---------------------YLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGG  314 (393)
T ss_pred             HHHHHHHHH---------------------hcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            766553321                     11226777788888888886532 23566678888999999999998876


Q ss_pred             CC
Q 017640          366 TT  367 (368)
Q Consensus       366 ~t  367 (368)
                      ++
T Consensus       315 ~~  316 (393)
T COG0436         315 LS  316 (393)
T ss_pred             ee
Confidence            54

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.97  E-value=3.7e-29  Score=233.01  Aligned_cols=263  Identities=17%  Similarity=0.179  Sum_probs=214.8

Q ss_pred             CCcHHHHHHHHHHHHHhhccCCCCcchhhH---HHHHHHHHHHHHHHHHcCCCCCCcEEEeCC-HHHHHHHHHHHccCCC
Q 017640           78 QKPIAVLKALQNYYEAYNSNVHRGIHFLSA---KATDEYELARKKVAAFINASDSGEIVFTKN-ATEAINLVAYSWGLSN  153 (368)
Q Consensus        78 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~r~~la~~~~~~~~~~v~~t~g-~t~a~~~~~~~~~~~~  153 (368)
                      ++|..|++++++++..++ +.+++.+..+.   .+.+.++++++.++++++.+.+++|++++| +|.|++.++..+    
T Consensus         2 ~~p~~v~~~~~~~~~~~~-~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl----   76 (349)
T TIGR01364         2 ALPEEVLEQAQKELLNFN-GTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNL----   76 (349)
T ss_pred             CCCHHHHHHHHHHHhCcc-CCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhc----
Confidence            578999999999999877 77777775554   455899999999999999865557888866 999999999998    


Q ss_pred             CCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC----CCCCCHHHHHHhcccCceEEEEcccccccccccCHHH
Q 017640          154 LKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND----DESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEE  229 (368)
Q Consensus       154 ~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~----~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~  229 (368)
                      +.+|+++++...+.++..  +...+++.|+ +..+..++    ...+|+++++  +++++++|+++|..|.||+..|   
T Consensus        77 ~~~~~~~l~i~~G~fg~r--~~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~th~ETstGv~~~---  148 (349)
T TIGR01364        77 LAEGKVADYIVTGAWSKK--AAKEAKKYGV-VNVVASGKEGNYTKIPDPSTWE--ISEDAAYVHYCANETIHGVEFR---  148 (349)
T ss_pred             CCCCCeEEEEECCHHHHH--HHHHHHHhCC-cEEEeccccCCCCCCCCHHhcC--CCCCCCEEEEcCCCCcccEecc---
Confidence            778999888877777655  6888999999 77777542    2345666555  3568899999999999999987   


Q ss_pred             HHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCcceeecccCCCC
Q 017640          230 IVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHST  309 (368)
Q Consensus       230 i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~  309 (368)
                        ++++.+++++++|+++++|..++|++++  |++++|.||++||+|+|++++++++++.+.|.....       .++..
T Consensus       149 --~l~~~~~~l~iVDavss~g~~~id~~~~--d~~~~ssqK~lgP~Glg~l~~s~~~~~~~~~~~~~~-------~~~~~  217 (349)
T TIGR01364       149 --ELPDVKNAPLVADMSSNILSRPIDVSKF--GLIYAGAQKNIGPAGLTVVIVRKDLLGRASRITPSM-------LNYKI  217 (349)
T ss_pred             --eecccCCCeEEEEccccccCccCCHHHc--cEEEEecccccCCCceEEEEECHHHHhhcccCCCCc-------chHHH
Confidence              6677789999999999999999999875  599999999999999999999999998887732210       11100


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          310 FADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       310 ~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~-g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      ..  ......||||+..++++..+++++.++ |++++.+|..++++++++.|.+++|+
T Consensus       218 ~~--~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl  273 (349)
T TIGR01364       218 HA--ENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGF  273 (349)
T ss_pred             HH--hcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            00  011234899999999999999999999 79999999999999999999998764

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.97  E-value=2.5e-28  Score=230.70  Aligned_cols=272  Identities=18%  Similarity=0.196  Sum_probs=211.1

Q ss_pred             cCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCC-CcEEEeCCHHHHHHHHHHHccC
Q 017640           73 NAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDS-GEIVFTKNATEAINLVAYSWGL  151 (368)
Q Consensus        73 ~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~-~~v~~t~g~t~a~~~~~~~~~~  151 (368)
                      ..++..+++.+.+++.+..    .       ..+..+.+..+++|+.+++++|.+++ +.|++++|+|+++..++.++  
T Consensus        10 ~pgP~~~~~~~~~a~~~~~----~-------~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l--   76 (368)
T PRK13479         10 TPGPLTTSRTVREAMLRDW----G-------SWDDDFNALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSL--   76 (368)
T ss_pred             cCCCCCCCHHHHHHhCCCC----C-------CCChHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhc--
Confidence            3444455666666654432    1       11233457888999999999999653 36789999999999999998  


Q ss_pred             CCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc--CceEEEEcccccccccccCHHH
Q 017640          152 SNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR--KTKLVVIHHISNMLASILPIEE  229 (368)
Q Consensus       152 ~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~--~~~~v~~~~~~n~tG~~~~l~~  229 (368)
                        ..+||.+++..+.+++..  +...++..|++++.++.++++.+|++++++++++  ++++|++++++|+||.+.|+++
T Consensus        77 --~~~~~~vlv~~~~~~~~~--~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~~~~  152 (368)
T PRK13479         77 --VPRDGKVLVPDNGAYGAR--IAQIAEYLGIAHVVLDTGEDEPPDAAEVEAALAADPRITHVALVHCETTTGILNPLDE  152 (368)
T ss_pred             --cCCCCeEEEEeCCchHHH--HHHHHHHcCCcEEEEECCCCCCCCHHHHHHHHHhCCCCcEEEEEcccCccccccCHHH
Confidence              678889888877666543  3566788899999999987788899999999864  4578999999999999999999


Q ss_pred             HHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcC-cCCCCcceEEEEcccccccCCCcccCCcceeecccCC-
Q 017640          230 IVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDH-  307 (368)
Q Consensus       230 i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~-  307 (368)
                      |.++|+++|+++++|++|++|..++++..+++|++++|+|| ++||+|+|++++++++++.+.+....+..  +..... 
T Consensus       153 i~~l~~~~~~~livDa~~~~g~~~~~~~~~~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~~~~~--~~~~~~~  230 (368)
T PRK13479        153 IAAVAKRHGKRLIVDAMSSFGAIPIDIAELGIDALISSANKCIEGVPGFGFVIARRSELEACKGNSRSLSL--DLYDQWA  230 (368)
T ss_pred             HHHHHHHcCCEEEEEcccccCCccccccccCceEEEecCccccccCCCceEEEECHHHHHHhhcCCCCeee--cHHHHHh
Confidence            99999999999999999999988888888889999999999 56899999999999988877643321100  000000 


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          308 STFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       308 ~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~-g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      ........+|   |+++..++++.++++.+.+. ++++..++..++++++.+.|.++ |++
T Consensus       231 ~~~~~~~~~~---t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  287 (368)
T PRK13479        231 YMEKTGQWRF---TPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRAL-GFE  287 (368)
T ss_pred             hhcccCCCCC---CCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCc
Confidence            0011123334   78999999999999988665 58888899999999999999876 543

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.96  E-value=6.1e-28  Score=227.35  Aligned_cols=264  Identities=18%  Similarity=0.182  Sum_probs=199.1

Q ss_pred             CCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCC
Q 017640           77 SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKS  156 (368)
Q Consensus        77 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~  156 (368)
                      +++.+.+.+++.++...+ .++....+..+....+..+++++.+++++|.   +++++|+|+++++..++.++    +++
T Consensus        11 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~---~~i~~~~g~t~al~~~l~~~----~~~   82 (361)
T cd06452          11 GRLTPEARKALIEWGDGY-SVCDFCRGRLDEIEKPPIKDFHHDLAEFLGM---DEARVTPGAREGKFAVMHSL----CEK   82 (361)
T ss_pred             CCCCHHHHHHHHHHhccc-CCccccccccccccCchHHHHHHHHHHHcCC---ceEEEeCCHHHHHHHHHHHh----cCC
Confidence            478888888888877433 3332111222222345678999999999998   38999999999999999988    889


Q ss_pred             CCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCC--CCCHHHHHHhcc-------cCceEEEEcccccccccccCH
Q 017640          157 GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDE--SPDLDKLKEMLS-------RKTKLVVIHHISNMLASILPI  227 (368)
Q Consensus       157 gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~--~~d~~~l~~~l~-------~~~~~v~~~~~~n~tG~~~~l  227 (368)
                      ||+|+++.++|++.+.    .++..|++++.++.++++  .+|++.++++++       +++++|++++++||||...|+
T Consensus        83 gd~Vl~~~~~~~~~~~----~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~  158 (361)
T cd06452          83 GDWVVVDGLAHYTSYV----AAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDA  158 (361)
T ss_pred             CCEEEEcCCcchHHHH----HHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccH
Confidence            9999999999988653    356779999999988654  889999999886       368999999999999999999


Q ss_pred             HHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCC-CCcceEEEEcccccccCCCcccCCcceeecccC
Q 017640          228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCG-PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLD  306 (368)
Q Consensus       228 ~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g-~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~  306 (368)
                      ++|.++|+++|+++++|++|+.|..+++...++.|++++|+||+++ +.++|++++++++++.+......++. .     
T Consensus       159 ~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~~~~~G~l~~~~~~~~~l~~~~~~~~~-~-----  232 (361)
T cd06452         159 KKIAKVCHEYGVPLLLNGAYTVGRMPVSGKELGADFIVGSGHKSMAASAPIGVLATTEEWADIVFRTSQMFKI-K-----  232 (361)
T ss_pred             HHHHHHHHHcCCeEEEECCcccCCcCCCHHHcCCCEEEecCCccccCCCCeEEEEECHHHHHHHhcccccccc-c-----
Confidence            9999999999999999999999887777767789999999999776 44599999999988877543321110 0     


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          307 HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       307 ~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                             ...+..+++....++++..+++.+.+. ++.+ ++..+.++++.+.|.+++|++
T Consensus       233 -------~~~~~~~~~~~~~~~~~~~al~~~~~~-~~~~-~~~~~~~~~l~~~L~~l~g~~  284 (361)
T cd06452         233 -------EVELLGCTLRGAPLVTLMASFPHVKER-VKRW-DEEVEKARWFVAELEKIEGIK  284 (361)
T ss_pred             -------eeeeeccccCchHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHhcCCCeE
Confidence                   011223455556666666777665442 3333 333445688889998876653

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.96  E-value=8.1e-28  Score=228.52  Aligned_cols=276  Identities=14%  Similarity=0.066  Sum_probs=206.9

Q ss_pred             EEeccCC--------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCC-CcEEE--eCC
Q 017640           69 VYLDNAA--------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDS-GEIVF--TKN  137 (368)
Q Consensus        69 i~l~~~~--------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~-~~v~~--t~g  137 (368)
                      +|+|+++        .+++.+.+.+.+...+.....+|+..     ....+.++++++++++++|.+++ +++.+  |+|
T Consensus        35 iyld~~a~~~~~~~~tt~~~p~~~~~~~~~l~~~~~np~s~-----~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsG  109 (431)
T TIGR01788        35 LSLDGNPRLNLATFVTTWMEPEARKLMDETINKNMIDKDEY-----PQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIG  109 (431)
T ss_pred             hhhcCCcceeeeeeeCCCCCHHHHHHHHHHHhcCCCCcccC-----ccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEech
Confidence            5666666        67788889999888887655565432     22348899999999999999832 24544  899


Q ss_pred             HHHHHHHHHHHccCC---C-CC-----CCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC-CCCCHHHHHHhccc
Q 017640          138 ATEAINLVAYSWGLS---N-LK-----SGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSR  207 (368)
Q Consensus       138 ~t~a~~~~~~~~~~~---~-~~-----~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~l~~  207 (368)
                      +|+|+++++.+.+..   . .+     .+..|++++.+|+++    ...++..|.+++.+|++++ +.+|+++|+++|++
T Consensus       110 gTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv----~ka~~~lg~~v~~i~~d~~~~~vd~~~L~~~i~~  185 (431)
T TIGR01788       110 SSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCW----EKFARYFDVELREVPMDPGRYVIDPEQVVEAVDE  185 (431)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHH----HHHHHHcCceeEEEecCCCceeeCHHHHHHHHhh
Confidence            999999998765210   0 01     123799999999994    4555667999999999876 58999999999999


Q ss_pred             CceEEEEcccccccccccCHHHHHHHHHhc------CCEEEEecCCc-------CCcccccCCCCCccEEEecCcCc-CC
Q 017640          208 KTKLVVIHHISNMLASILPIEEIVHWSHDV------GAKVLVDACQS-------VPHMVVDVQGLDADFLVASSHKM-CG  273 (368)
Q Consensus       208 ~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~------g~~li~D~a~~-------~~~~~~~~~~~~~d~~~~s~~K~-~g  273 (368)
                      ++.+|++++.+|.||.+.|+++|+++|+++      |+++++|++|+       .+..++++...++|.++.|.||+ +|
T Consensus       186 ~t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~  265 (431)
T TIGR01788       186 NTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRLPRVKSINVSGHKYGLV  265 (431)
T ss_pred             CCeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcCCCCceEEEECchhccCC
Confidence            999999999999999999999999999999      99999999999       44455555556789999999996 59


Q ss_pred             CCcceEEEEccc--ccccCCC--cccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH
Q 017640          274 PTGIGFLFGKSD--LLSAMPP--FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYE  349 (368)
Q Consensus       274 ~~G~G~l~~~~~--li~~l~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~  349 (368)
                      |.|+|+++++++  +.+.+..  -+.++...             .... .++.+....++....+..+...|++++.+++
T Consensus       266 P~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~-------------~~t~-~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~  331 (431)
T TIGR01788       266 YPGVGWVIWRDEEALPEELIFHVNYLGGDEP-------------TFTL-NFSRPANQVIAQYYNFLRLGREGYRKIMQNS  331 (431)
T ss_pred             CCCcEEEEEeChHHcchhheecccccCCCCC-------------Ccce-ecCchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence            999999999875  2222211  11121110             0111 2233333444556667777778999999999


Q ss_pred             HHHHHHHHHHHHhhcCCC
Q 017640          350 VKWIICSIIVIQERHNTT  367 (368)
Q Consensus       350 ~~l~~~l~~~l~~~~g~t  367 (368)
                      .++++++.+.|++.++++
T Consensus       332 ~~la~~l~~~L~~~~~~e  349 (431)
T TIGR01788       332 LDVARYLAEEIAKLGPFE  349 (431)
T ss_pred             HHHHHHHHHHHHhCCCEE
Confidence            999999999999987654

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.96  E-value=4.5e-28  Score=226.81  Aligned_cols=270  Identities=19%  Similarity=0.191  Sum_probs=215.4

Q ss_pred             EeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchh---hHHHHHHHHHHHHHHHHHcCCCCCCcEEEe-CCHHHHHHHH
Q 017640           70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFL---SAKATDEYELARKKVAAFINASDSGEIVFT-KNATEAINLV  145 (368)
Q Consensus        70 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~r~~la~~~~~~~~~~v~~t-~g~t~a~~~~  145 (368)
                      ++-+.++..+|+.|++++.+.+.+++ +.+.|.+..   +..+.+.++++++.+++++|.+.+++|+++ .++|.+++.+
T Consensus         5 ~l~~pGP~~~p~~V~~a~~~~~~~~~-~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~   83 (360)
T PRK05355          5 YNFSAGPAMLPEEVLEQAQQELLDWN-GSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMV   83 (360)
T ss_pred             eeccCCCCCCCHHHHHHHHHHhhccc-cCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHH
Confidence            45567788999999999999987665 544454433   344569999999999999998544467666 7778899999


Q ss_pred             HHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC-CCCCCHHHHHH-hcccCceEEEEccccccccc
Q 017640          146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKE-MLSRKTKLVVIHHISNMLAS  223 (368)
Q Consensus       146 ~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~-~l~~~~~~v~~~~~~n~tG~  223 (368)
                      +..+    +.+|+++++.....++..  +...+++.|.. ..+..++ .+..+..++++ .+++++++|.++|..|.||.
T Consensus        84 ~~nl----~~~g~~~l~i~~G~fg~r--~~~~a~~~g~~-~~~~~~~~~g~~~~~~~~~~~l~~~~~~V~~th~eTstGv  156 (360)
T PRK05355         84 PMNL----LGGGKKADYVDTGSWSKK--AIKEAKKYGEV-NVAASSEDDGFTYIPPLDEWQLSDDAAYVHYTSNETIDGT  156 (360)
T ss_pred             HHhc----CCCCCeEEEEECCHHHHH--HHHHHHHhCCc-eEEecccccCCCCCCChhhccCCCCCCEEEEccCCCcceE
Confidence            9988    888998888777666654  67888888965 6666553 45556556656 78888999999999999999


Q ss_pred             cc-CHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCcceee
Q 017640          224 IL-PIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISD  302 (368)
Q Consensus       224 ~~-~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~  302 (368)
                      .. |+++|      +|+++++|+++++|+.++|++++  |++++|.||++||+|+|++++++++++++.|.. ++ .   
T Consensus       157 ~~~~i~~i------~g~l~vVDavss~g~~~idv~~~--d~~~~ssqK~lgP~Glg~l~~s~~~l~~~~~~~-~~-~---  223 (360)
T PRK05355        157 EFHELPDT------GDVPLVADMSSDILSRPIDVSKF--GLIYAGAQKNIGPAGLTIVIVREDLLGRALPSI-PS-M---  223 (360)
T ss_pred             ecCccccc------CCCcEEEEcCccccCccCCHHHc--cEEEEeccccccCCceEEEEECHHHHhhcccCC-Ch-H---
Confidence            98 67766      89999999999999999999875  599999999999999999999999998887742 11 1   


Q ss_pred             cccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHhhc
Q 017640          303 VFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEVKWIICSIIVIQERH  364 (368)
Q Consensus       303 ~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~-g~~~i~~~~~~l~~~l~~~l~~~~  364 (368)
                        .++..+.  ......||||+..++++.++++++.++ |++++.+|.+++++++++.|+++.
T Consensus       224 --~~~~~~~--~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~  282 (360)
T PRK05355        224 --LDYKTHA--DNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSD  282 (360)
T ss_pred             --HHHHHHH--hcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCC
Confidence              1111000  011234899999999999999999999 899999999999999999999875

>PLN03032 serine decarboxylase; Provisional

Probab=99.96  E-value=2.4e-27  Score=220.82  Aligned_cols=274  Identities=11%  Similarity=-0.005  Sum_probs=218.4

Q ss_pred             eEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCC-cEEEeCCHHHHHHHHH
Q 017640           68 LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSG-EIVFTKNATEAINLVA  146 (368)
Q Consensus        68 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~-~v~~t~g~t~a~~~~~  146 (368)
                      ..++++....-....+.+++.++.....+||.. .+..+....+.++++++.+++++|.++++ ..+||+|+|+|+..++
T Consensus        24 ~~~~gy~~~~~~~~~~~~~~~~~~~~~~gnP~s-~~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al  102 (374)
T PLN03032         24 SVHFGYPYNLDFDYGELSQLMKYSINNLGDPFI-ESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGI  102 (374)
T ss_pred             hhccCCCchhccChHHHHHHHHhcccCCCCCcc-cCCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHH
Confidence            356666665555656788888887776678864 56667778999999999999999998652 2499999999999998


Q ss_pred             HHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc---CceEEEEccccccccc
Q 017640          147 YSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR---KTKLVVIHHISNMLAS  223 (368)
Q Consensus       147 ~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~---~~~~v~~~~~~n~tG~  223 (368)
                      .+.+.  ..++..|+++..+|+|+..+    ++..|.+++.||.+++|.+|+++|+++|++   +|.+|+++..+|+||.
T Consensus       103 ~~ar~--~~~~~~vi~s~~~H~Sv~ka----a~~lg~~~~~V~~d~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~  176 (374)
T PLN03032        103 LVGRE--VFPDGILYASRESHYSVFKA----ARMYRMEAVKVPTLPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGA  176 (374)
T ss_pred             HHHHH--hCCCcEEEeCCCceeHHHHH----HHHcCCCCeEeeeCCCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCcc
Confidence            86531  23456899999999996544    556688899999999999999999999976   4789999999999999


Q ss_pred             ccCHHHHHHHHHhcC-----CEEEEecCCcCCcccc-------cCCCCCccEEEecCcCcCC-CCcceEEEEcccccccC
Q 017640          224 ILPIEEIVHWSHDVG-----AKVLVDACQSVPHMVV-------DVQGLDADFLVASSHKMCG-PTGIGFLFGKSDLLSAM  290 (368)
Q Consensus       224 ~~~l~~i~~l~~~~g-----~~li~D~a~~~~~~~~-------~~~~~~~d~~~~s~~K~~g-~~G~G~l~~~~~li~~l  290 (368)
                      +.|+++|+++|++||     +++++|++++.+..++       ++. .++|.++.|+||++| |.|+|+++++++.++.+
T Consensus       177 idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~-~~vDSis~s~HK~~g~P~g~G~ll~r~~~~~~~  255 (374)
T PLN03032        177 VDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFR-KPIGSVSVSGHKFLGCPMPCGVALTRKKHVKAL  255 (374)
T ss_pred             CCCHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCC-cCCcEEEECcccccCCCcCeEEEEEEchhhHhh
Confidence            999999999999996     5899999999877764       332 368999999999888 99999999998876544


Q ss_pred             CCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          291 PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       291 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      ....      .+...       ... --.|+.+-...+++..++..+-..|+.++.+++.++++++.++|.+.
T Consensus       256 ~~~~------~Yl~~-------~d~-ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~  314 (374)
T PLN03032        256 SQNV------EYLNS-------RDA-TIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEA  314 (374)
T ss_pred             ccCC------cccCC-------CCC-cccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3110      00000       011 12567777777888888998888899999999999999999999885

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=99.96  E-value=3.8e-27  Score=204.96  Aligned_cols=299  Identities=21%  Similarity=0.229  Sum_probs=241.2

Q ss_pred             hhcCCCCcccccccCCCCeEEeccCCCCCCcHHHHHH-HHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCC
Q 017640           50 ITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKA-LQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD  128 (368)
Q Consensus        50 ~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~v~~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~  128 (368)
                      ..|+.|..-       +++|||+.++.|..|+.+.+. ++...++|.....++.......+.++-+.+-.+++.++|+.+
T Consensus        21 ~lr~~f~lp-------~~viyLdgnSLGa~p~~~~a~~~q~a~deW~~~lirsw~~a~~~W~~lp~~lgdklApLiGA~~   93 (407)
T COG3844          21 KLRDRFALP-------GGVIYLDGNSLGARPRAVTARLQQVATDEWGEGLIRSWNKAKADWFDLPERLGDKLAPLIGARA   93 (407)
T ss_pred             hhHhhccCC-------CCeEEeeccccccCchHHHHHHHHHHHHHHHhhhhhhhcccCCchhhchhHHHHHhhhhhcCCC
Confidence            356666653       789999999999777554444 444555555443322222234466777789999999999998


Q ss_pred             CCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcC-CCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc
Q 017640          129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTV-AEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR  207 (368)
Q Consensus       129 ~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~-~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~  207 (368)
                      . +|+++.+.+--+..++.+.-  +.++|+.|++++ .+|++-++.....+...+..     .+-.+.+.++++++++++
T Consensus        94 ~-Evvv~dtts~nl~k~L~aal--r~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~-----~~~~~~~~P~~~~~~~~d  165 (407)
T COG3844          94 G-EVVVTDTTSINLFKVLAAAL--RPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIG-----YDLEGVIAPRALEEAITD  165 (407)
T ss_pred             C-ceEEeCCcchHHHHHHHHHh--ccCCCceEEeecCCCCCcchhhhcchhhhhccc-----ccceeeeChHHHHHhhcc
Confidence            6 89999888777776666542  356688877775 56778777777777666543     222345578899999999


Q ss_pred             CceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcC-CCCc-ceEEEEccc
Q 017640          208 KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMC-GPTG-IGFLFGKSD  285 (368)
Q Consensus       208 ~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~-g~~G-~G~l~~~~~  285 (368)
                      ++.+|++++++.-||+.+++.+|.+++|+||++++.|-+|+.|.+++++...+.||-+++.+|.+ |++| .+++++.++
T Consensus       166 d~AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGavp~~Lh~~gaDfaigcsyKYLNgGPGapa~l~v~~~  245 (407)
T COG3844         166 DVAVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGAVPVDLHAAGADFAIGCSYKYLNGGPGAPAGLFVAPR  245 (407)
T ss_pred             ceEEEEeccccccccceeeHHHHHHHHHhcCceEEeehhcccCCcceeecccCCCeeeeeeceeccCCCCCceeEEeccc
Confidence            99999999999999999999999999999999999999999999999999999999999999954 4444 999999999


Q ss_pred             ccccCCCcccCCcceeecccCCCCCC--CCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          286 LLSAMPPFLGGGEMISDVFLDHSTFA--DPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       286 li~~l~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      ..+...|...||.....++.....|.  +...||..||+++.++.++..+|+.+.+.++.+++++...|.+++.+.++.+
T Consensus       246 h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd~fieLvEa~  325 (407)
T COG3844         246 HRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLALTDYFIELVEAR  325 (407)
T ss_pred             cccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHHHHHHHHHhc
Confidence            99988888888888777776655554  4668999999999999999999999999999999999999999999998765

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.96  E-value=4e-27  Score=221.34  Aligned_cols=268  Identities=20%  Similarity=0.238  Sum_probs=205.1

Q ss_pred             CCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCC-cEEEeCCHHHHHHHHHHHccCCCCC
Q 017640           77 SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSG-EIVFTKNATEAINLVAYSWGLSNLK  155 (368)
Q Consensus        77 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~-~v~~t~g~t~a~~~~~~~~~~~~~~  155 (368)
                      ..+++.+.+++++...      +     ....+.+..+++|+.+++++|+++++ .|++++|+|+++..++.++    +.
T Consensus         8 ~~~~~~~~~~~~~~~~------~-----~~~~~~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~----~~   72 (355)
T TIGR03301         8 LSTSATVRDAMLVDWC------H-----WDSEFNDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSL----VP   72 (355)
T ss_pred             CCCCHHHHHHhhhhcc------C-----CCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhc----cC
Confidence            3456666666655211      1     12234577889999999999998653 6788999999999999988    67


Q ss_pred             CCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc--CceEEEEcccccccccccCHHHHHHH
Q 017640          156 SGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR--KTKLVVIHHISNMLASILPIEEIVHW  233 (368)
Q Consensus       156 ~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~--~~~~v~~~~~~n~tG~~~~l~~i~~l  233 (368)
                      ++|++++.++.+++..  +...++..|.+++.++.++++.+|++++++.+++  +++++++++++|+||.+.|+++|.++
T Consensus        73 ~~~~vi~~~~~~~~~~--~~~~a~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l  150 (355)
T TIGR03301        73 RDGKLLVLINGAYGER--LAKICEYLGIPHTDLNFSEYEPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIAKV  150 (355)
T ss_pred             CCCeEEEECCCchhhH--HHHHHHHcCCceEEEecCCCCCCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHHHHHHH
Confidence            7887776665544422  4566777899999999887788999999999864  45788899999999999999999999


Q ss_pred             HHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCc-CCCCcceEEEEcccccccCCCcccCCcceeecccCCCCCCC
Q 017640          234 SHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKM-CGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFAD  312 (368)
Q Consensus       234 ~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~-~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~  312 (368)
                      |++||+++++|+++++|..++++..++.|++++|+||+ +|++|+|++++++++++.+.........  .....+..+..
T Consensus       151 ~~~~~~~livD~~~s~g~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  228 (355)
T TIGR03301       151 ARSHGAVLIVDAMSSFGAIPIDIEELDVDALIASANKCLEGVPGFGFVIARRDLLEASAGNARSLYL--DLYDQWAYMEK  228 (355)
T ss_pred             HHHcCCEEEEEeccccCCcccchhhcCccEEEecCCcccccCCceeEEEECHHHHHHhhCCCCCcee--eHHHHHHHhhh
Confidence            99999999999999999888888778899999999995 5788999999999998876532111000  00000000000


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          313 PPSRFEAGTPAIGEAIGLGAAIDYLSTIG-MQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       313 ~~~~~~~gt~~~~~~~a~~~al~~~~~~g-~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                        .+...+|++...++++..+++.+.+.| ++...++.+++.+++.+.|.+. |+
T Consensus       229 --~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~-g~  280 (355)
T TIGR03301       229 --TGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRAL-GF  280 (355)
T ss_pred             --cCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence              112235899999999999999998776 8889999999999999999875 54

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.96  E-value=6.8e-27  Score=223.25  Aligned_cols=292  Identities=17%  Similarity=0.129  Sum_probs=209.7

Q ss_pred             CCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchh--hHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHH
Q 017640           66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFL--SAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN  143 (368)
Q Consensus        66 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~  143 (368)
                      .++++++.+..+..++.+.++..... .. ...+ ..+..  ..+..+..+++++.+++++|.+.+ +++++++++++.+
T Consensus        20 ~~~~~l~~g~~~~~~p~~~~~~~~~~-~~-~~~~-~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~-~v~~~~~g~~~~~   95 (398)
T cd00613          20 QSMSFLGSGTYKHNPPAVIKRNILEN-EF-YTAY-TPYQPEISQGRLQALFELQTMLCELTGMDVA-NASLQDEATAAAE   95 (398)
T ss_pred             cCcccccccccCCcCcHHHHHHhccc-cC-cccC-CCCChhhhhhHHHHHHHHHHHHHHHHCCCcc-ceeccCchHHHHH
Confidence            56689999999976666655543333 11 0111 11111  345568888999999999998754 6777775555544


Q ss_pred             HHHHHccCCCCCC--CCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEccccccc
Q 017640          144 LVAYSWGLSNLKS--GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNML  221 (368)
Q Consensus       144 ~~~~~~~~~~~~~--gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~t  221 (368)
                      .++.++.   +.+  ||+|+++++.|+++...+....+..|++++.++.++++.+|++++++++.+++++|++++++ ++
T Consensus        96 ~~~~~~~---~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~t~~viv~~~~-~~  171 (398)
T cd00613          96 AAGLAAI---RAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVSEEVAALMVQYPN-TL  171 (398)
T ss_pred             HHHHHHH---hcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEeccCCCCCcCHHHHHHhcCCCeEEEEEECCC-CC
Confidence            4444331   444  99999999999998877776655556899999988778889999999999999999999985 89


Q ss_pred             ccccCH-HHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCC-----CcceEEEEcccccccCCCccc
Q 017640          222 ASILPI-EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGP-----TGIGFLFGKSDLLSAMPPFLG  295 (368)
Q Consensus       222 G~~~~l-~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~-----~G~G~l~~~~~li~~l~~~~~  295 (368)
                      |.+.++ ++|.++|++||+++|+|++|+.+....+...+++|++++|+||+++|     +|+|++++++++++.+.+...
T Consensus       172 G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~~~~~~d~~~~s~~K~~~p~g~Ggp~~g~l~~~~~~~~~~~~~~~  251 (398)
T cd00613         172 GVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEYGADIVVGNLQKTGVPHGGGGPGAGFFAVKKELVRFLPGRLV  251 (398)
T ss_pred             ceecchHHHHHHHHHhcCCEEEEEeccccccCCCChHHcCCCEEEeeccccCCCCCCCCCceeEEEEhhhhHhhCCCCee
Confidence            999984 99999999999999999999876655555667899999999997643     458999999999888776665


Q ss_pred             CCcceeecccCC---CCCCCCCCCCCCCCCCH-----HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcC
Q 017640          296 GGEMISDVFLDH---STFADPPSRFEAGTPAI-----GEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHN  365 (368)
Q Consensus       296 g~~~~~~~~~~~---~~~~~~~~~~~~gt~~~-----~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g  365 (368)
                      ||.........+   ........|++.|++++     ....++..+++.+.+.|+++++++..++.+++.+.|.++.+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~  329 (398)
T cd00613         252 GVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGLKEIAERAHLNANYLAKRLKEVGG  329 (398)
T ss_pred             ccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            554321100000   01111224555555543     33334445556666668889999999999999999988654

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.95  E-value=2.7e-26  Score=218.97  Aligned_cols=259  Identities=14%  Similarity=0.163  Sum_probs=187.6

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcC----C--CCCCcEEEeCCH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN----A--SDSGEIVFTKNA  138 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~----~--~~~~~v~~t~g~  138 (368)
                      ++++.|+.+.+. .+++.+.+++.+.+.....+.+    .     .....++|++++++++    .  +++++|++|+|+
T Consensus        32 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~y----~-----~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~  102 (399)
T PRK07681         32 HKMIDLSIGNPDMPPADFVREEMVHTANQKESYGY----T-----LSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGS  102 (399)
T ss_pred             CCeEEeCCCCCCCCCCHHHHHHHHHHHhccccCCC----C-----CCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCc
Confidence            577889888776 5677888888877653211110    0     0123367777777764    3  332589999999


Q ss_pred             HHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC--CCCCHHHHHHhcccCceEEEEcc
Q 017640          139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLVVIHH  216 (368)
Q Consensus       139 t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~l~~~~~~v~~~~  216 (368)
                      ++++.+++.++    +++||.|++++|+|+.    +...++..|++++.++++++  +.+|++++++++.+++++|++++
T Consensus       103 ~~al~~~~~~~----~~~Gd~Vlv~~P~y~~----~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~  174 (399)
T PRK07681        103 QDGLVHLPMVY----ANPGDIILVPDPGYTA----YETGIQMAGATSYYMPLKKENDFLPDLELIPEEIADKAKMMILNF  174 (399)
T ss_pred             HHHHHHHHHHh----CCCCCEEEECCCCccc----hHHHHHhcCCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeC
Confidence            99999999988    8999999999998877    44556677999999999754  56899999999988899999999


Q ss_pred             cccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc----cc---cCC-CCCccEEEecCcCcCCCCc--ceEEEEc
Q 017640          217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VV---DVQ-GLDADFLVASSHKMCGPTG--IGFLFGK  283 (368)
Q Consensus       217 ~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~----~~---~~~-~~~~d~~~~s~~K~~g~~G--~G~l~~~  283 (368)
                      |+||||.+++   +++|+++|++||++||+|++|..-..    ..   .+. ..+..+++.|+||.||.+|  +||++.+
T Consensus       175 P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i~~  254 (399)
T PRK07681        175 PGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMIGN  254 (399)
T ss_pred             CCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCccceeEEEecC
Confidence            9999999999   77889999999999999999973211    11   111 1245688999999999888  9999999


Q ss_pred             ccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          284 SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       284 ~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +++++.+.....                     ....+.+.+...++..+++.... -+++.+++.++..+++.+.|.+.
T Consensus       255 ~~l~~~~~~~~~---------------------~~~~~~s~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~~  312 (399)
T PRK07681        255 EEIVRALTQFKS---------------------NTDYGVFLPIQKAACAALRNGAA-FCEKNRGIYQERRDTLVDGFRTF  312 (399)
T ss_pred             HHHHHHHHHHHh---------------------hcccCCCHHHHHHHHHHHhCcHH-HHHHHHHHHHHHHHHHHHHHHHC
Confidence            988877653321                     01113444455555555543211 14555666677777788888765

>PRK09105 putative aminotransferase; Provisional

Probab=99.95  E-value=2e-26  Score=217.28  Aligned_cols=253  Identities=15%  Similarity=0.131  Sum_probs=192.3

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL  144 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~  144 (368)
                      ++.++|+.+.++ ++|+.+.+++.+.......++.          . ...++|+.+++++|.+++ +|++|+|+++++.+
T Consensus        43 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~Y~~----------~-~~~~Lr~aia~~~~v~~e-~I~it~Gs~~ai~~  110 (370)
T PRK09105         43 EGAVFLNANECPLGPSPAARDAAARSAALSGRYDL----------E-LEDDLRTLFAAQEGLPAD-HVMAYAGSSEPLNY  110 (370)
T ss_pred             CCcEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCC----------c-hHHHHHHHHHHHhCcChh-hEEEcCChHHHHHH
Confidence            678999999987 6789999999887654322211          1 155799999999999765 99999999999999


Q ss_pred             HHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccc
Q 017640          145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI  224 (368)
Q Consensus       145 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~  224 (368)
                      ++.++    +++||+|++++|+|+.    +...++..|++++.++.++++.+|++.+++. .++++++++++|+||||.+
T Consensus       111 ~~~~l----~~~gd~Vli~~P~y~~----~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~-~~~~~~v~l~nP~NPTG~~  181 (370)
T PRK09105        111 AVLAF----TSPTAGLVTADPTYEA----GWRAADAQGAPVAKVPLRADGAHDVKAMLAA-DPNAGLIYICNPNNPTGTV  181 (370)
T ss_pred             HHHHH----cCCCCEEEEeCCChHH----HHHHHHHcCCeEEEecCCCCCCCCHHHHHhc-CCCCCEEEEeCCCCCCCcC
Confidence            99998    8899999999997776    4555677799999999988888999999877 5678999999999999999


Q ss_pred             cCHHHHHHHHHh--cCCEEEEecCCcC-Cccc--ccCCC-CCccEEEecCcCcCCCCc--ceEEEEcccccccCCCcccC
Q 017640          225 LPIEEIVHWSHD--VGAKVLVDACQSV-PHMV--VDVQG-LDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGG  296 (368)
Q Consensus       225 ~~l~~i~~l~~~--~g~~li~D~a~~~-~~~~--~~~~~-~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~~~~~g  296 (368)
                      +|.++|.++++.  +++++|+|++|.. ...+  .++.. ....+++.|+||.||.+|  +||+++++++++.+.+..  
T Consensus       182 ~~~~~l~~l~~~~~~~~~lIvDEaY~~f~~~~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~~i~~l~~~~--  259 (370)
T PRK09105        182 TPRADIEWLLANKPAGSVLLVDEAYIHFSDAPSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARPDLLAKLARFG--  259 (370)
T ss_pred             cCHHHHHHHHHhCCCCcEEEEECchHHhccCcchHHHHhhCCCEEEEecccHhhcCCccceeeeecCHHHHHHHHhcC--
Confidence            998888777654  4899999999852 1111  12212 234577789999999999  999999999887766431  


Q ss_pred             CcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          297 GEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                                            ....+.....++..+++.  ..-++..+++..+..+++.+.|++. |+
T Consensus       260 ----------------------~~~~~~~~~~aa~~~L~~--~~~~~~~~~~~~~~r~~l~~~L~~~-g~  304 (370)
T PRK09105        260 ----------------------HNPLPVPAAAAGLASLRD--PKLVPQRRAENAAVREDTIAWLKKK-GY  304 (370)
T ss_pred             ----------------------CCCcCHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHHC-CC
Confidence                                  013455555555555542  1125666777888888888888774 44

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.95  E-value=2.2e-26  Score=217.62  Aligned_cols=269  Identities=19%  Similarity=0.184  Sum_probs=207.0

Q ss_pred             EeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHc
Q 017640           70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSW  149 (368)
Q Consensus        70 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~  149 (368)
                      +|+... +++.+.+.+++.+++.....++.  . .  ....+..+++++.+++++|.+++ .+++++|+++++..++.++
T Consensus        24 ~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~--~-~--~~~~~~~~~~~~~la~~~g~~~~-~~~~~~ggt~a~~~a~~~~   96 (371)
T PRK13520         24 ILSSMC-TEPHPIARKAHEMFLETNLGDPG--L-F--PGTAKLEEEAVEMLGELLHLPDA-YGYITSGGTEANIQAVRAA   96 (371)
T ss_pred             eeeeee-cCchHHHHHHHHHHHhcCCCCcc--c-C--ccHHHHHHHHHHHHHHHhCCCCC-CeEEecCcHHHHHHHHHHH
Confidence            355544 55777788998888775333321  1 1  23466678999999999998765 7889999999999998776


Q ss_pred             cCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHH
Q 017640          150 GLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEE  229 (368)
Q Consensus       150 ~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~  229 (368)
                      .....+++++|++++++|++    +...++..|++++.++.++++.+|++.|++++++++++|++.+++|+||.+.|+++
T Consensus        97 ~~~~~~~~~~vl~~~~~h~s----~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~vi~~~~~~~tG~~~~l~~  172 (371)
T PRK13520         97 RNLAKAEKPNIVVPESAHFS----FDKAADMLGVELRRAPLDDDYRVDVKAVEDLIDDNTIGIVGIAGTTELGQVDPIPE  172 (371)
T ss_pred             HhhccCCCceEEecCcchHH----HHHHHHHcCceEEEecCCCCCcCCHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHH
Confidence            21122468899999998877    55566778999999999888899999999999888888888888999999999999


Q ss_pred             HHHHHHhcCCEEEEecCCcCCccc-------ccCCCCCccEEEecCcCcC-CCCcceEEEEc-ccccccCC---CcccCC
Q 017640          230 IVHWSHDVGAKVLVDACQSVPHMV-------VDVQGLDADFLVASSHKMC-GPTGIGFLFGK-SDLLSAMP---PFLGGG  297 (368)
Q Consensus       230 i~~l~~~~g~~li~D~a~~~~~~~-------~~~~~~~~d~~~~s~~K~~-g~~G~G~l~~~-~~li~~l~---~~~~g~  297 (368)
                      |.++|+++|+++++|++|+.+..+       ++....++|++++|.||+. ++.++|+++++ +++++.+.   ++..+ 
T Consensus       173 I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~~~l~~~~~~~~~-  251 (371)
T PRK13520        173 LSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLAPIPAGGILFRDESYLDALAVDTPYLTS-  251 (371)
T ss_pred             HHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCccccCccCCceEEEEcCHHHHHhhcccCccccC-
Confidence            999999999999999999865432       2333457899999999964 45567777764 44665543   11111 


Q ss_pred             cceeecccCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          298 EMISDVFLDHSTFADPPSRF-EAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~-~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                                      ..++ ..||++...++++..+++.+.+.|.+.+.++..++++++.+.|.++ |++
T Consensus       252 ----------------~~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~  305 (371)
T PRK13520        252 ----------------KKQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKER-GFE  305 (371)
T ss_pred             ----------------CCCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhC-CCE
Confidence                            0122 3578888889999999999888889999999999999999999886 654

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.95  E-value=1.6e-26  Score=216.65  Aligned_cols=256  Identities=16%  Similarity=0.175  Sum_probs=196.5

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL  144 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~  144 (368)
                      ++++.|..+.++ ++|+.+++++.++......++..          . ..++|+.++++++++++ +|++|+|+++++..
T Consensus        19 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~y~~~----------~-~~~lr~~ia~~~~~~~~-~i~~~~G~~~~l~~   86 (346)
T TIGR01141        19 KEVIKLNSNENPFGPPPKAKEALRAEADKLHRYPDP----------D-PAELKQALADYYGVDPE-QILLGNGSDEIIEL   86 (346)
T ss_pred             CceEEccCCCCCCCCCHHHHHHHHHhHHHhhcCCCC----------C-HHHHHHHHHHHhCcChH-HEEEcCCHHHHHHH
Confidence            678999988766 67889999999876543222211          1 14799999999998754 89999999999999


Q ss_pred             HHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccc
Q 017640          145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI  224 (368)
Q Consensus       145 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~  224 (368)
                      ++.++    +++||+|++++|+|+.    +...++..|.+++.++.++++.+|++.+++++.+++++|++++++||||.+
T Consensus        87 ~~~~l----~~~gd~v~~~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~  158 (346)
T TIGR01141        87 LIRAF----LEPGDAVLVPPPTYSM----YEISAKIHGAEVVKVPLDEDGQLDLEDILVAIDDKPKLVFLCSPNNPTGNL  158 (346)
T ss_pred             HHHHh----cCCCCEEEEcCCCHHH----HHHHHHHcCCeEEEeccCCCCCCCHHHHHHhcCCCCCEEEEeCCCCCCCCC
Confidence            99888    7899999999997654    445567789999999998888899999999988889999999999999999


Q ss_pred             cCHHHHHHHHHhc--CCEEEEecCCcCCcc---ccc-CCCCCccEEEecCcCcCCCCc--ceEEEEcccccccCCCcccC
Q 017640          225 LPIEEIVHWSHDV--GAKVLVDACQSVPHM---VVD-VQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGG  296 (368)
Q Consensus       225 ~~l~~i~~l~~~~--g~~li~D~a~~~~~~---~~~-~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~~~~~g  296 (368)
                      +|++++.++|+.+  |+++|+|++|+.-..   ..+ ......+++++|+||++|.+|  +|++++++++++.+++....
T Consensus       159 ~~~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~  238 (346)
T TIGR01141       159 LSRSDIEAVLERTPEDALVVVDEAYGEFSGEPSTLPLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANAEIIDALNKVRAP  238 (346)
T ss_pred             CCHHHHHHHHHhCCCCcEEEEECchhhhcCCccHHHHHhhCCCEEEEehhhHhhhchhhhceeeecCHHHHHHHHhccCC
Confidence            9999999999877  999999999872111   111 112235688899999998777  89999999988877654311


Q ss_pred             CcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          297 GEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                                             .+.+...+.++...++...  ..++++++.+++.+++.+.|.+++|+
T Consensus       239 -----------------------~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~~g~  283 (346)
T TIGR01141       239 -----------------------FNLSRLAQAAAIAALRDDD--FIEKTVEEINAERERLYDGLKKLPGL  283 (346)
T ss_pred             -----------------------CCCCHHHHHHHHHHhCCHH--HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence                                   1233444444444443322  26778888889999999999877664

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK05957 aspartate aminotransferase; Provisional

Probab=99.95  E-value=3.9e-26  Score=217.04  Aligned_cols=266  Identities=14%  Similarity=0.113  Sum_probs=196.1

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC--CCCcEEEeCCHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS--DSGEIVFTKNATEAI  142 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~--~~~~v~~t~g~t~a~  142 (368)
                      ++.++|+.+... ++++.+.+++.+++.....    ..+....+..+..+.+++.+++.+|..  ++++|++|+|+++++
T Consensus        27 ~~~~~l~~g~~~~~~~~~~~~a~~~~~~~~~~----~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l  102 (389)
T PRK05957         27 PGTISLGQGVVSYPPPPEAIEALNNFLANPEN----HKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAF  102 (389)
T ss_pred             CCeEEccCCCCCCCCCHHHHHHHHHHHhCCCC----CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHH
Confidence            457899998877 6788999999887753211    122222344667778888888888975  245899999999999


Q ss_pred             HHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccc
Q 017640          143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLA  222 (368)
Q Consensus       143 ~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG  222 (368)
                      ..++.++    +++||+|++++|.|.....    .++..|++++.++.+.++.+|++++++++++++++|++++++||||
T Consensus       103 ~~~~~~~----~~~gd~Vlv~~P~y~~~~~----~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~klv~~~~p~NPtG  174 (389)
T PRK05957        103 MNAILAI----TDPGDEIILNTPYYFNHEM----AITMAGCQPILVPTDDNYQLQPEAIEQAITPKTRAIVTISPNNPTG  174 (389)
T ss_pred             HHHHHHh----cCCCCEEEEeCCCCcCHHH----HHHhcCCEEEEeecCCCCCcCHHHHHHhcCcCceEEEEeCCCCCCC
Confidence            9999887    7899999999999877533    3456799999999987888999999999988999999999999999


Q ss_pred             cccC---HHHHHHHHHhcCCEEEEecCCcCCc------cc-ccC-CCCCccEEEecCcCcCCCCc--ceEEEEccccccc
Q 017640          223 SILP---IEEIVHWSHDVGAKVLVDACQSVPH------MV-VDV-QGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSA  289 (368)
Q Consensus       223 ~~~~---l~~i~~l~~~~g~~li~D~a~~~~~------~~-~~~-~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~  289 (368)
                      .++|   +++|+++|++||+++|+|++|....      .+ ..+ +.....+++.|+||.+|++|  +||+++++++++.
T Consensus       175 ~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~~~~  254 (389)
T PRK05957        175 VVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVIPIHLLEA  254 (389)
T ss_pred             cCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCccceeEEEecCHHHHHH
Confidence            9999   8889999999999999999986211      11 111 22245688999999999999  9999999998887


Q ss_pred             CCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcC
Q 017640          290 MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHN  365 (368)
Q Consensus       290 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g  365 (368)
                      +......                     ...+.+.....++..+++.-.. -+++..++..+..+++.+.|+++.+
T Consensus       255 ~~~~~~~---------------------~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~~  308 (389)
T PRK05957        255 IKKIQDT---------------------ILICPPVVSQYAALGALQVGKS-YCQQHLPEIAQVRQILLKSLGQLQD  308 (389)
T ss_pred             HHHHHhh---------------------cccCCCcHHHHHHHHHHhCChH-HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            7754321                     1113333344444444431111 1344455567777778788776544

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=99.95  E-value=1.9e-26  Score=205.91  Aligned_cols=266  Identities=16%  Similarity=0.159  Sum_probs=208.8

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC-CCCcEEEeCCHHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-DSGEIVFTKNATEAIN  143 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~~v~~t~g~t~a~~  143 (368)
                      ++++.|=-+... +.||.|++++++.++..       .+.+.....+..+++..+..+..+.. .++.|+|++|.--++.
T Consensus        25 ~DvlPmWVADMDf~~pp~i~~Al~~rvdhG-------vfGY~~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~   97 (388)
T COG1168          25 EDVLPMWVADMDFPTPPEIIEALRERVDHG-------VFGYPYGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGIS   97 (388)
T ss_pred             CCcceeeeecccCCCCHHHHHHHHHHHhcC-------CCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHH
Confidence            566777777766 78999999999998862       22222334667888999999988876 3358999999999999


Q ss_pred             HHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC-CC--CCCCHHHHHHhccc-CceEEEEccccc
Q 017640          144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN-DD--ESPDLDKLKEMLSR-KTKLVVIHHISN  219 (368)
Q Consensus       144 ~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~-~~--~~~d~~~l~~~l~~-~~~~v~~~~~~n  219 (368)
                      .+++++    .++||.|++.+|.|+    +|....+..|.++...|+. ++  +.+|+++||+++.. +++++++|+|||
T Consensus        98 ~~I~~~----T~~gd~Vvi~tPvY~----PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHN  169 (388)
T COG1168          98 LAIRAL----TKPGDGVVIQTPVYP----PFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHN  169 (388)
T ss_pred             HHHHHh----CcCCCeeEecCCCch----HHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCC
Confidence            999999    899999999999555    4666677789999999987 34  56799999998876 569999999999


Q ss_pred             ccccccC---HHHHHHHHHhcCCEEEEecCCcC----C--cccc---cCCCCCccEEEecCcCcCCCCc--ceEEEEccc
Q 017640          220 MLASILP---IEEIVHWSHDVGAKVLVDACQSV----P--HMVV---DVQGLDADFLVASSHKMCGPTG--IGFLFGKSD  285 (368)
Q Consensus       220 ~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~----~--~~~~---~~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~  285 (368)
                      |||.++.   +++|.++|++||+.||.|++|+.    |  ++++   +....+..+.+.|.+|.|+.+|  ++.++..++
T Consensus       170 P~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~  249 (388)
T COG1168         170 PTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNR  249 (388)
T ss_pred             CCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecCH
Confidence            9999999   88999999999999999999982    2  2222   2222256788889999999888  777777654


Q ss_pred             cc-ccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh-
Q 017640          286 LL-SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER-  363 (368)
Q Consensus       286 li-~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~-  363 (368)
                      .+ .+....+                    .+...+.+|..++.|..+|.+.-..+ ++.+.++++.+.+++.+.+.+. 
T Consensus       250 ~lr~~~~~~l--------------------~~~~~~~~n~lg~~A~~aAY~~G~~W-Ld~L~~yl~~N~~~~~~~l~~~~  308 (388)
T COG1168         250 ELRAKFLKRL--------------------KRNGLHGPSALGIIATEAAYNQGEPW-LDELLEYLKDNRDYVADFLNKHL  308 (388)
T ss_pred             HHHHHHHHHH--------------------HHhcCCCCchHHHHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHHhhC
Confidence            43 3322221                    11223578999999999999988876 8999999999999999999765 


Q ss_pred             cCCC
Q 017640          364 HNTT  367 (368)
Q Consensus       364 ~g~t  367 (368)
                      |+++
T Consensus       309 P~v~  312 (388)
T COG1168         309 PGVK  312 (388)
T ss_pred             CCcE
Confidence            5654

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.95  E-value=3.9e-26  Score=217.02  Aligned_cols=262  Identities=19%  Similarity=0.195  Sum_probs=188.3

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----CC--CCCCcEEEeCCH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NA--SDSGEIVFTKNA  138 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~--~~~~~v~~t~g~  138 (368)
                      ++++.|+.+.+. ++++.+.+++.+.+......    .+.    ......++|+++++++    |.  +++++|++|+|+
T Consensus        31 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~Y~----~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~  102 (385)
T PRK09276         31 VDVISLGIGDPDLPTPDHIIEAMCKAVEDPENH----QYP----SYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGS  102 (385)
T ss_pred             CCEEEecCCCCCCCCCHHHHHHHHHHHhCCCCC----CCC----CCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCc
Confidence            567889988876 56778888888777532111    111    0112336777777766    44  233358999999


Q ss_pred             HHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC--CCCCHHHHHHhcccCceEEEEcc
Q 017640          139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLVVIHH  216 (368)
Q Consensus       139 t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~l~~~~~~v~~~~  216 (368)
                      ++++..++.++    +++||.|++++|+|+..    ...++..|++++.++.+.+  +.+|++++++.+.+++++|++++
T Consensus       103 ~~~i~~~~~~~----~~~gd~Vl~~~P~y~~~----~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~l~~  174 (385)
T PRK09276        103 KEGIAHIPLAF----VNPGDVVLVPDPGYPVY----KIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVAKKAKLMFINY  174 (385)
T ss_pred             HHHHHHHHHHh----CCCCCEEEEcCCCCcCh----HHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeC
Confidence            99999999988    89999999999988874    4445667999999998643  56899999999888899999999


Q ss_pred             cccccccccC---HHHHHHHHHhcCCEEEEecCCcCCc----ccc---cCCC-CCccEEEecCcCcCCCCc--ceEEEEc
Q 017640          217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----MVV---DVQG-LDADFLVASSHKMCGPTG--IGFLFGK  283 (368)
Q Consensus       217 ~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~----~~~---~~~~-~~~d~~~~s~~K~~g~~G--~G~l~~~  283 (368)
                      |+||||.++|   +++|+++|++||+++|+|++|....    ...   .+.. .+..+++.|+||.||.+|  +||++++
T Consensus       175 p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~~  254 (385)
T PRK09276        175 PNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAVGN  254 (385)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcchhheeeeCC
Confidence            9999999999   5788899999999999999987321    111   1221 245688999999999999  9999999


Q ss_pred             ccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          284 SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       284 ~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +++++.+......                     ...+.+.+...++..+++.... -+++++++.++..+++.+.|++.
T Consensus       255 ~~l~~~~~~~~~~---------------------~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~~  312 (385)
T PRK09276        255 ADLIAGLGKVKSN---------------------VDSGVFQAIQEAGIAALNGPQE-VVEELRKIYQERRDILVEGLRKL  312 (385)
T ss_pred             HHHHHHHHHHHhh---------------------ccCCCCHHHHHHHHHHHcCcHH-HHHHHHHHHHHHHHHHHHHHHhC
Confidence            9988776643210                     0112333444445455542222 25666777788888888888775


Q ss_pred             cCC
Q 017640          364 HNT  366 (368)
Q Consensus       364 ~g~  366 (368)
                       |+
T Consensus       313 -~~  314 (385)
T PRK09276        313 -GL  314 (385)
T ss_pred             -CC
Confidence             44

>PRK08960 hypothetical protein; Provisional

Probab=99.95  E-value=3.1e-26  Score=217.75  Aligned_cols=259  Identities=13%  Similarity=0.097  Sum_probs=187.3

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcC------CCCCCcEEEeCCH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN------ASDSGEIVFTKNA  138 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------~~~~~~v~~t~g~  138 (368)
                      +++++|+.+.++ ++|+.+.+++.+.+...   .  ..+.    ......++|+.++++++      .++ ++|++|+|+
T Consensus        32 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~---~--~~Y~----~~~g~~~lr~~ia~~~~~~~g~~~~~-~~i~it~G~  101 (387)
T PRK08960         32 HDVIHLEIGEPDFTTAEPIVAAGQAALAAG---H--TRYT----AARGLPALREAIAGFYAQRYGVDVDP-ERILVTPGG  101 (387)
T ss_pred             CCeEEeCCCCCCCCCCHHHHHHHHHHHhcC---C--CccC----CCCCCHHHHHHHHHHHHHHhCCCCCh-hhEEEccCc
Confidence            678999999988 67999999998887631   0  0111    12233467788888763      334 599999999


Q ss_pred             HHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC--CCCCHHHHHHhcccCceEEEEcc
Q 017640          139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLVVIHH  216 (368)
Q Consensus       139 t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~l~~~~~~v~~~~  216 (368)
                      ++++..++.++    +++||+|++++|+|+.....    ++..|++++.++++++  +.+|++.++++++++++++++++
T Consensus       102 ~~al~~~~~~~----~~~gd~vlv~~p~y~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~  173 (387)
T PRK08960        102 SGALLLASSLL----VDPGKHWLLADPGYPCNRHF----LRLVEGAAQLVPVGPDSRYQLTPALVERHWNADTVGALVAS  173 (387)
T ss_pred             HHHHHHHHHHh----cCCCCEEEEcCCCCcchHHH----HHhcCCeEEEEecCcccCCCCCHHHHHHHhCccceEEEEEC
Confidence            99999999988    89999999999999986543    3445899999998754  57899999999998899999999


Q ss_pred             cccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc---cccC-CCCCccEEEecCcCcCCCCc--ceEEEEccccc
Q 017640          217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVDV-QGLDADFLVASSHKMCGPTG--IGFLFGKSDLL  287 (368)
Q Consensus       217 ~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~---~~~~-~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li  287 (368)
                      ++||||.++|   +++|+++|++||+++|+|++|..-..   .... ......++++|+||.+|.+|  +||++++++++
T Consensus       174 p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~~  253 (387)
T PRK08960        174 PANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASVLEVDDDAFVLNSFSKYFGMTGWRLGWLVAPPAAV  253 (387)
T ss_pred             CCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhccCCEEEEeecccccCCcccEEEEEEcCHHHH
Confidence            9999999999   55777789999999999999863111   1111 11234578899999999889  99999999988


Q ss_pred             ccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          288 SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       288 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +.+......                    +.. +.+.....++..+++.....-++.+++...+..+.+.+.|++.
T Consensus       254 ~~~~~~~~~--------------------~~~-~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~~  308 (387)
T PRK08960        254 PELEKLAQN--------------------LYI-SASTPAQHAALACFEPETLAILEARRAEFARRRDFLLPALREL  308 (387)
T ss_pred             HHHHHHHhh--------------------hcc-CCCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            776543321                    111 2344444444444431101124555666667777777777664

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.95  E-value=4.1e-26  Score=216.03  Aligned_cols=252  Identities=18%  Similarity=0.140  Sum_probs=191.9

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL  144 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~  144 (368)
                      +++++|+.+.++ .+++.+.+++.+. .....+|..           ...++|+++++++|.+++ +|++|+|+++++..
T Consensus        52 ~~~i~l~~n~~p~~~~~~v~~a~~~~-~~~~~Yp~~-----------~~~~lr~~ia~~~~~~~~-~I~~t~Ga~~~i~~  118 (380)
T PLN03026         52 EDIVKLDANENPYGPPPEVLEALGNM-KFPYVYPDP-----------ESRRLRAALAEDSGLESE-NILVGCGADELIDL  118 (380)
T ss_pred             cceEEccCCCCCCCCCHHHHHHHHhh-HhhccCCCC-----------CHHHHHHHHHHHhCcChh-hEEEcCCHHHHHHH
Confidence            578999999866 5777788887542 111112211           133799999999998765 99999999999999


Q ss_pred             HHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhc-ccCceEEEEccccccccc
Q 017640          145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEML-SRKTKLVVIHHISNMLAS  223 (368)
Q Consensus       145 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~n~tG~  223 (368)
                      ++.++    +++||+|++++|.|+.    +...++..|++++.++.++++.+|+++|++++ .+++++|++++|+||||.
T Consensus       119 ~~~~~----~~~gd~Vlv~~P~y~~----y~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~~v~l~~P~NPTG~  190 (380)
T PLN03026        119 LMRCV----LDPGDKIIDCPPTFGM----YVFDAAVNGAEVIKVPRTPDFSLDVPRIVEAVETHKPKLLFLTSPNNPDGS  190 (380)
T ss_pred             HHHHh----cCCCCEEEEcCCChHH----HHHHHHHcCCEEEEeecCCCCCcCHHHHHHHHhccCCcEEEEeCCCCCCCC
Confidence            99988    7899999999997653    55666778999999999877889999999998 678999999999999999


Q ss_pred             ccCHHHHHHHHHhcCCEEEEecCCcCCc---ccc-cCCCCCccEEEecCcCcCCCCc--ceEEEEcccccccCCCcccCC
Q 017640          224 ILPIEEIVHWSHDVGAKVLVDACQSVPH---MVV-DVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGG  297 (368)
Q Consensus       224 ~~~l~~i~~l~~~~g~~li~D~a~~~~~---~~~-~~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~~~~~g~  297 (368)
                      ++|.+++.++++.. +++|+|++|..-.   ... .+...+..+++.|+||.||.+|  +||++.++++++.+...... 
T Consensus       191 ~~~~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~~~~~~~~~viv~~SfSK~~glaGlRiGy~~~~~~~i~~l~~~~~~-  268 (380)
T PLN03026        191 IISDDDLLKILELP-ILVVLDEAYIEFSTQESRMKWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQP-  268 (380)
T ss_pred             CCCHHHHHHHHhcC-CEEEEECcchhhcCCcchHHHHHhCCCEEEEecchHhhcCccccceeeecCHHHHHHHHHhcCC-
Confidence            99999999999765 8999999986211   111 1223356789999999999888  99999999888776533211 


Q ss_pred             cceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhc
Q 017640          298 EMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERH  364 (368)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~  364 (368)
                                            ...+..+..++..+++...  -++.++++..+..+++.+.|+++.
T Consensus       269 ----------------------~~~~~~~q~aa~~aL~~~~--~~~~~~~~~~~~r~~l~~~L~~~~  311 (380)
T PLN03026        269 ----------------------YNVSVAAEVAACAALSNPK--YLEDVKNALVEERERLFGLLKEVP  311 (380)
T ss_pred             ----------------------CCCCHHHHHHHHHHhhCHH--HHHHHHHHHHHHHHHHHHHHHHCC
Confidence                                  1345555566666664321  145667777778888888887764

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.95  E-value=4.5e-26  Score=216.41  Aligned_cols=261  Identities=18%  Similarity=0.178  Sum_probs=186.7

Q ss_pred             CCCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----CCC--CCCcEEEeCC
Q 017640           65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS--DSGEIVFTKN  137 (368)
Q Consensus        65 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~--~~~~v~~t~g  137 (368)
                      +++++.|+.+.++ .+++.+.+++.+.+....  .  ..+..    .....++|+.+++++    |.+  ++++|++|+|
T Consensus        28 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~Y~~----~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G   99 (383)
T TIGR03540        28 GVDVISLGIGDPDLPTPKHIVEALCKAAENPE--N--HRYPS----YEGMLAYRQAVADWYKRRFGVELDPETEVLSLIG   99 (383)
T ss_pred             CCCeEEeCCCCCCCCCCHHHHHHHHHHHhCCC--C--CCCCC----CCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCC
Confidence            3678899998877 467888888887765310  0  01111    111235666666665    443  3236899999


Q ss_pred             HHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC--CCCCHHHHHHhcccCceEEEEc
Q 017640          138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLVVIH  215 (368)
Q Consensus       138 ~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~l~~~~~~v~~~  215 (368)
                      +++++..++.++    +++||+|++.+|+|+...    ..++..|++++.++.+++  +.+|++++++++.+++++|+++
T Consensus       100 ~~~~l~~~~~~~----~~~gd~vlv~~P~y~~~~----~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~i~  171 (383)
T TIGR03540       100 SKEGIAHIPLAF----VNPGDIVLVPDPGYPVYR----IGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAKKAKLMFIN  171 (383)
T ss_pred             cHHHHHHHHHHh----CCCCCEEEEeCCCCcchH----HHHHhcCCEEEEEecCcccCCccCHHHHHhhccccceEEEEe
Confidence            999999999988    899999999999988843    445667999999998743  5679999999998889999999


Q ss_pred             ccccccccccC---HHHHHHHHHhcCCEEEEecCCcC----Cccccc---CCC-CCccEEEecCcCcCCCCc--ceEEEE
Q 017640          216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSV----PHMVVD---VQG-LDADFLVASSHKMCGPTG--IGFLFG  282 (368)
Q Consensus       216 ~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~----~~~~~~---~~~-~~~d~~~~s~~K~~g~~G--~G~l~~  282 (368)
                      +|+||||.+++   +++|.++|++||+++|+|++|..    +.....   +.. .+..+++.|+||.||.+|  +||++.
T Consensus       172 ~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~i~  251 (383)
T TIGR03540       172 YPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVG  251 (383)
T ss_pred             CCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCccceeeEEeC
Confidence            99999999999   68899999999999999999972    111111   121 235688899999999999  999999


Q ss_pred             cccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHh
Q 017640          283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       283 ~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~  362 (368)
                      ++++++.+......                    . ..+.+.+...++..+++...+ -++.++++..+..+.+.+.|++
T Consensus       252 ~~~l~~~~~~~~~~--------------------~-~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~L~~  309 (383)
T TIGR03540       252 NADLIAGLGKVKTN--------------------V-DSGVFQAIQYAAIAALNGPQD-VVKEIRKIYQRRRDLLLEALKK  309 (383)
T ss_pred             CHHHHHHHHHHHHh--------------------c-ccCCChHHHHHHHHHHhCCHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence            99888776543210                    0 112333444455555543222 2456667777888888888876


Q ss_pred             h
Q 017640          363 R  363 (368)
Q Consensus       363 ~  363 (368)
                      .
T Consensus       310 ~  310 (383)
T TIGR03540       310 I  310 (383)
T ss_pred             C
Confidence            5

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.95  E-value=5.2e-26  Score=215.73  Aligned_cols=259  Identities=17%  Similarity=0.176  Sum_probs=192.5

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL  144 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~  144 (368)
                      .+.|.|+.+.+. ++++.+.+++.+.+.....+.        +...+...++|+++++++|.+++ +|++|+|+++++..
T Consensus        28 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~--------y~~~~g~~~lr~~ia~~l~~~~~-~v~~~~g~t~al~~   98 (380)
T PRK06225         28 KEMIWMGQNTNHLGPHEEVREAMIRCIEEGEYCK--------YPPPEGFPELRELILKDLGLDDD-EALITAGATESLYL   98 (380)
T ss_pred             CCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCC--------CCCCcchHHHHHHHHHhcCCCCC-cEEEeCCHHHHHHH
Confidence            578999988776 678889999888876421111        11123456899999999999875 99999999999999


Q ss_pred             HHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC---CCCCCHHHHHHhcccCceEEEEccccccc
Q 017640          145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND---DESPDLDKLKEMLSRKTKLVVIHHISNML  221 (368)
Q Consensus       145 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~---~~~~d~~~l~~~l~~~~~~v~~~~~~n~t  221 (368)
                      ++.++    +.+||+|++.+|.|..    +...++..|++++.++++.   ++.+|++.+++.+.++++++++++++|||
T Consensus        99 ~~~~~----~~~gd~vl~~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~Npt  170 (380)
T PRK06225         99 VMRAF----LSPGDNAVTPDPGYLI----IDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMDENTRLIYLIDPLNPL  170 (380)
T ss_pred             HHHHh----cCCCCEEEEcCCCCcc----hHHHHHHhCceEEeeccccccCCccCCHHHHHhhcCCCceEEEEeCCCCCC
Confidence            99988    7899999999998875    3445567799999998742   36789999999999899999999999999


Q ss_pred             ccccC---HHHHHHHHHhcCCEEEEecCCc---CCcccc-cCCCCCccEEEecCcCcCCCCc--ceEEEEcccccccCCC
Q 017640          222 ASILP---IEEIVHWSHDVGAKVLVDACQS---VPHMVV-DVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPP  292 (368)
Q Consensus       222 G~~~~---l~~i~~l~~~~g~~li~D~a~~---~~~~~~-~~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~~  292 (368)
                      |.+++   +++|.++|++||+++|+|++|.   .+..+. .. ..+..+++.|++|++|++|  +|++++++++++.+++
T Consensus       171 G~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~-~~~~~i~~~s~SK~~g~~G~RiG~i~~~~~l~~~~~~  249 (380)
T PRK06225        171 GSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLAAEY-APEHTVTSYSFSKIFGMAGLRIGAVVATPDLIEVVKS  249 (380)
T ss_pred             CcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccCCchhhc-CCCCEEEEeechhhcCCccceeEEEecCHHHHHHHHH
Confidence            99998   7889999999999999999975   122111 11 1245688889999999888  8999999998877664


Q ss_pred             cccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcC
Q 017640          293 FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHN  365 (368)
Q Consensus       293 ~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g  365 (368)
                      ...+                      ....+..+..++..+++..... .+.+++..++..+++.+.|++++|
T Consensus       250 ~~~~----------------------~~~~~~~~~~~a~~~l~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~  299 (380)
T PRK06225        250 IVIN----------------------DLGTNVIAQEAAIAGLKVKDEW-IDRIRRTTFKNQKLIKEAVDEIEG  299 (380)
T ss_pred             HHhc----------------------ccCCCHHHHHHHHHHHhcchHH-HHHHHHHHHHHHHHHHHHHHhCcC
Confidence            3211                      0123444555555555432222 355566666667777777777555

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.95  E-value=3.9e-26  Score=214.14  Aligned_cols=256  Identities=17%  Similarity=0.214  Sum_probs=191.9

Q ss_pred             CeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHH
Q 017640           67 KLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV  145 (368)
Q Consensus        67 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~  145 (368)
                      ..+.|+.+.+. ++|+.+.+++.+.+.....+    .+.     .....++|+.++++++++++ +|++|+|+++++..+
T Consensus        23 ~~~~l~~~~~~~~~p~~~~~a~~~~~~~~~~~----~y~-----~~~~~~lr~~ia~~~~~~~~-~i~it~G~~~~l~~~   92 (351)
T PRK14807         23 YKYKMDANETPFELPEEVIKNIQEIVKSSQVN----IYP-----DPTAEKLREELARYCSVVPT-NIFVGNGSDEIIHLI   92 (351)
T ss_pred             ceeEccCCCCCCCCCHHHHHHHHHHhhcCccc----CCC-----CccHHHHHHHHHHHhCCCcc-cEEEecCHHHHHHHH
Confidence            45778888877 67899999988876531111    111     11235799999999998765 999999999999999


Q ss_pred             HHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc-CceEEEEcccccccccc
Q 017640          146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASI  224 (368)
Q Consensus       146 ~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~  224 (368)
                      +.++    +++||+|++.+|.|..    +...++..|++++.++.++++.+|++.+++++++ ++++|++++++||||.+
T Consensus        93 ~~~l----~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~k~v~l~~p~NPtG~~  164 (351)
T PRK14807         93 MLAF----INKGDVVIYPHPSFAM----YSVYSKIAGAVEIPVKLKEDYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSV  164 (351)
T ss_pred             HHHh----cCCCCEEEEeCCChHH----HHHHHHHcCCeEEEeecCCCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCC
Confidence            9988    8999999999997664    5566677899999999987788999999999975 89999999999999999


Q ss_pred             cCHHHHHHHHHhcCCEEEEecCCcC--Cccccc-CCCCCccEEEecCcCcCCCCc--ceEEEEcccccccCCCcccCCcc
Q 017640          225 LPIEEIVHWSHDVGAKVLVDACQSV--PHMVVD-VQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEM  299 (368)
Q Consensus       225 ~~l~~i~~l~~~~g~~li~D~a~~~--~~~~~~-~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~~~~~g~~~  299 (368)
                      ++.+++.++|++++.++|+|++|..  +....+ ....+..++++|+||.+|.+|  +||++.++++++.+......   
T Consensus       165 ~~~~~l~~l~~~~~~~~ivDe~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~~~~~~~~~~~~~~---  241 (351)
T PRK14807        165 IEREDIIKIIEKSRGIVVVDEAYFEFYGNTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVANENILKYLNLVKSP---  241 (351)
T ss_pred             CCHHHHHHHHHhCCCEEEEeCcchhhcccchHHHhhhCCCEEEEecchHhcccchhceeeeecCHHHHHHHHHccCC---
Confidence            9999999999998889999999962  111111 122346799999999999888  99999999888766533210   


Q ss_pred             eeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          300 ISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                                          ...+.....++..+++   ....++..++..+..+++.+.|.+.+|+
T Consensus       242 --------------------~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~r~~l~~~l~~~~g~  285 (351)
T PRK14807        242 --------------------YNINSLSQVIALKVLR---TGVLKERVNYILNERERLIKELSKIPGI  285 (351)
T ss_pred             --------------------CCcCHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence                                1233444444444443   3224455556667777788888766554

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.95  E-value=5.5e-26  Score=215.81  Aligned_cols=266  Identities=16%  Similarity=0.119  Sum_probs=191.1

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcC--CCCCCcEEEeCCHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN--ASDSGEIVFTKNATEAI  142 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~--~~~~~~v~~t~g~t~a~  142 (368)
                      ++++.|+.+.+. ++++.+.+++.+.+....  .   .+....+..+..+.+.+.+.+.+|  .++ ++|++|+|+++++
T Consensus        24 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~--~---~Y~~~~G~~~lr~~la~~~~~~~~~~~~~-~~i~~t~g~~~al   97 (382)
T PRK06108         24 EGVLPLWFGESDLPTPDFIRDAAAAALADGE--T---FYTHNLGIPELREALARYVSRLHGVATPP-ERIAVTSSGVQAL   97 (382)
T ss_pred             CCeEEecCCCCCCCCCHHHHHHHHHHHhcCC--C---CCCCCCCCHHHHHHHHHHHHHHhCCCcCc-ceEEEeCChHHHH
Confidence            467899998877 568889999888765421  0   111111223333344444444457  434 4999999999999


Q ss_pred             HHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC---CCCCCHHHHHHhcccCceEEEEccccc
Q 017640          143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND---DESPDLDKLKEMLSRKTKLVVIHHISN  219 (368)
Q Consensus       143 ~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~---~~~~d~~~l~~~l~~~~~~v~~~~~~n  219 (368)
                      ..++.++    +++||.|++.+|+|+...    ..++..|++++.++.+.   ++.+|++++++.++++++++++++++|
T Consensus        98 ~~~~~~l----~~~gd~vl~~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~p~N  169 (382)
T PRK06108         98 MLAAQAL----VGPGDEVVAVTPLWPNLV----AAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITPRTRALFINSPNN  169 (382)
T ss_pred             HHHHHHh----cCCCCEEEEeCCCccchH----HHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcCccceEEEEECCCC
Confidence            9999988    889999999999888743    44566799999999873   356899999999988899999999999


Q ss_pred             ccccccC---HHHHHHHHHhcCCEEEEecCCcCCccc--------ccCCC-CCccEEEecCcCcCCCCc--ceEEEEccc
Q 017640          220 MLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV--------VDVQG-LDADFLVASSHKMCGPTG--IGFLFGKSD  285 (368)
Q Consensus       220 ~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~~--------~~~~~-~~~d~~~~s~~K~~g~~G--~G~l~~~~~  285 (368)
                      |||.++|   +++|.++|+++|+++|+|++|+.....        .++.. .+..+++.|+||.||.+|  +||++++++
T Consensus       170 PtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~  249 (382)
T PRK06108        170 PTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVAPPA  249 (382)
T ss_pred             CCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeCCHH
Confidence            9999998   678999999999999999998743211        12221 245688999999998777  899999998


Q ss_pred             ccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcC
Q 017640          286 LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHN  365 (368)
Q Consensus       286 li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g  365 (368)
                      +++.+.....                     +.....+.....++..+++...+ .++.++++.+++.+++.+.|.+.+|
T Consensus       250 ~~~~~~~~~~---------------------~~~~~~~~~~q~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~  307 (382)
T PRK06108        250 LGQVLEKLIE---------------------YNTSCVAQFVQRAAVAALDEGED-FVAELVARLRRSRDHLVDALRALPG  307 (382)
T ss_pred             HHHHHHHHHH---------------------hcccCCChHHHHHHHHHHhCChH-HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            8877654321                     00112344444445555543222 2567788888889999999987766


Q ss_pred             CC
Q 017640          366 TT  367 (368)
Q Consensus       366 ~t  367 (368)
                      ++
T Consensus       308 ~~  309 (382)
T PRK06108        308 VE  309 (382)
T ss_pred             Cc
Confidence            54

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.95  E-value=4.4e-26  Score=214.18  Aligned_cols=252  Identities=15%  Similarity=0.161  Sum_probs=192.0

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHH-hhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEA-YNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN  143 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~  143 (368)
                      +++++|+.+... ++++.+.+++.+.+.. ...++..           ...++|++++++++.+++ +|++|+|+++++.
T Consensus        24 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~y~~~-----------~~~~lr~aia~~~~~~~~-~I~it~G~~~al~   91 (353)
T PRK05387         24 AKLIKLNTNENPYPPSPKVLEAIRAALGDDLRLYPDP-----------NADALRQAIAAYYGLDPE-QVFVGNGSDEVLA   91 (353)
T ss_pred             cceeeccCCCCCCCCCHHHHHHHHHHhhhhhhcCCCC-----------cHHHHHHHHHHHhCCCHH-HEEEcCCHHHHHH
Confidence            567999999877 4578899999877653 2222221           124899999999998764 9999999999999


Q ss_pred             HHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEccccccccc
Q 017640          144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLAS  223 (368)
Q Consensus       144 ~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~  223 (368)
                      +++.++    +++||+|++++|+|+.    +...++..|++++.++.++++.+|++++++    .+++|++++|+||||.
T Consensus        92 ~~~~~l----~~~gd~vlv~~P~y~~----~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~----~~~~v~~~~P~NPtG~  159 (353)
T PRK05387         92 HAFLAF----FNHDRPLLFPDITYSF----YPVYAGLYGIPYEEIPLDDDFSIDVEDYLR----PNGGIIFPNPNAPTGI  159 (353)
T ss_pred             HHHHHh----cCCCCEEEEeCCCHHH----HHHHHHHcCCEEEEeecCCCCCCCHHHHHh----cCCEEEEeCCCCCCCC
Confidence            999998    8999999999997754    455567779999999998888899999874    4578999999999999


Q ss_pred             ccCHHHHHHHHHhc-CCEEEEecCCcC-Ccc-ccc-CCCCCccEEEecCcCcCCCCc--ceEEEEcccccccCCCcccCC
Q 017640          224 ILPIEEIVHWSHDV-GAKVLVDACQSV-PHM-VVD-VQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGG  297 (368)
Q Consensus       224 ~~~l~~i~~l~~~~-g~~li~D~a~~~-~~~-~~~-~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~~~~~g~  297 (368)
                      ++|.+++.++++.+ ++++|+|++|.. +.. ... ....+.+++++|+||.+|.+|  +||+++++++++.++....  
T Consensus       160 ~~~~~~~~~l~~~~~~~~livDe~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~~~~l~~~~~--  237 (353)
T PRK05387        160 ALPLAEIERILAANPDSVVVIDEAYVDFGGESAIPLIDRYPNLLVVQTFSKSRSLAGLRVGFAIGHPELIEALNRVKN--  237 (353)
T ss_pred             CCCHHHHHHHHHhCCCcEEEEeCcccccCCcchHHHHhhCCCEEEEEehhHhhcchhhhceeeecCHHHHHHHHHhhc--
Confidence            99999999999875 999999999862 111 111 122346799999999999888  9999999988877654321  


Q ss_pred             cceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          298 EMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                                        .+...+.+...+.++..+++...  ..++.+++..+..+++.+.|++.
T Consensus       238 ------------------~~~~~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~  283 (353)
T PRK05387        238 ------------------SFNSYPLDRLAQAGAIAAIEDEA--YFEETRAKVIATRERLVEELEAL  283 (353)
T ss_pred             ------------------cCCCCCcCHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHHHHC
Confidence                              11122556666666666664211  24567777888888888888775

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.95  E-value=8e-26  Score=213.45  Aligned_cols=270  Identities=18%  Similarity=0.174  Sum_probs=194.2

Q ss_pred             CeEEeccC-CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHH
Q 017640           67 KLVYLDNA-ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV  145 (368)
Q Consensus        67 ~~i~l~~~-~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~  145 (368)
                      +.++++.- ..|.+.+.+.+++.++......... ..........+...++++.+|+++|.+   .+++++|+++++..+
T Consensus         7 ~~~~~~~~~~~g~~~~~~~~a~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~e~lA~~~g~~---~~~i~~g~~~a~~~~   82 (370)
T TIGR02539         7 GSINLNPLQRGGVLTEAARKALVEFGDGYSVCDF-CGGRLDQITKPPIHDFLEDLAEFLGMD---EARVTHGAREGKFAV   82 (370)
T ss_pred             cccccChhhhCCCCcHHHHHHHHHHhhccccccc-cccccccccchHHHHHHHHHHHHhCCC---ceEEECChHHHHHHH
Confidence            44566653 2457888888888877553211111 011111223445668899999999997   456789999999999


Q ss_pred             HHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC--CCCCCHHHHHHhccc-------CceEEEEcc
Q 017640          146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSR-------KTKLVVIHH  216 (368)
Q Consensus       146 ~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~-------~~~~v~~~~  216 (368)
                      +.++    +++||.|++..++|++.+.    .++..|++++.++.++  ++.+|+++|++++++       ++++|++++
T Consensus        83 ~~~l----~~~gd~Vl~~~~~h~s~~~----~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~  154 (370)
T TIGR02539        83 MHAL----CKEGDWVVLDGLAHYTSYV----AAERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTH  154 (370)
T ss_pred             HHHh----hCCCCEEEECCcccHHHHH----HHHHcCCEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEEC
Confidence            9998    7899999999999988653    3567799999999863  478899999999863       678999999


Q ss_pred             cccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCc-ceEEEEcccccccCCCccc
Q 017640          217 ISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTG-IGFLFGKSDLLSAMPPFLG  295 (368)
Q Consensus       217 ~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G-~G~l~~~~~li~~l~~~~~  295 (368)
                      ++|+||...|+++|.++|+++|+++++|++|+.|..+.+....+.|++++|+||++++.| +|++++++++++.++....
T Consensus       155 p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~~~~~~~~~di~v~s~sK~~~~~g~~G~l~~~~~~i~~l~~~~~  234 (370)
T TIGR02539       155 VDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPVSAKEIGADFIVGSGHKSMAASGPCGVLGMSEEWEDIVLRKSR  234 (370)
T ss_pred             CCCCCccccCHHHHHHHHHHcCCeEEEECccccCCcCCCHHHcCCCEEEeeCcccccCCCCEEEEEECHHHHhhhccccc
Confidence            999999999999999999999999999999999876666555679999999999888644 8999999999988875543


Q ss_pred             CCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          296 GGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       296 g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      .+....             ..+..++....+..++..+++...+ .++...+. .++.+++.+.|.++
T Consensus       235 ~~~~~~-------------~~~~~~~~~~~~~~~~~~al~~~~~-~l~~~~~~-~~~~~~l~~~L~~~  287 (370)
T TIGR02539       235 YSPVKE-------------VELLGCTSRGAPIVTMMASFPHVVE-RVKRWDEE-VKKTRWFVAELEDI  287 (370)
T ss_pred             CCccce-------------eeeecccccccHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHHhC
Confidence            222100             0111233333445555556654332 13333333 34456888888775

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.95  E-value=4.4e-26  Score=214.39  Aligned_cols=256  Identities=13%  Similarity=0.137  Sum_probs=196.0

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHH--hhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEA--YNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI  142 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~  142 (368)
                      .++++|+.+.++ ++|+.+++++.+.+..  ...++..           ...++|+.++++++.+.+++|++|+|+++++
T Consensus        26 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~-----------~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i   94 (356)
T PRK04870         26 TGMVKLDAMENPYRLPAELRAELGERLAEVALNRYPDP-----------RAAALKAALRAAMGVPAGADVLLGNGSDELI   94 (356)
T ss_pred             CCceeCcCCCCCCCCCHHHHHHHHHHhhccccccCCCC-----------CHHHHHHHHHHHhCcCCCCcEEEcCCHHHHH
Confidence            578999999887 6899999999887753  2222211           1247999999999987545899999999999


Q ss_pred             HHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc-CceEEEEccccccc
Q 017640          143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNML  221 (368)
Q Consensus       143 ~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~t  221 (368)
                      ..++.++    +++||+|++++|.|..    +...++..|++++.+++++++.+|++.+++++.. ++++|++++++|||
T Consensus        95 ~~~~~~~----~~~gd~vlv~~P~y~~----~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~~p~NPt  166 (356)
T PRK04870         95 QLLALAC----AKPGATVLAPEPGFVM----YRMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAEHRPALVFLAYPNNPT  166 (356)
T ss_pred             HHHHHHh----cCCCCEEEECCCCHHH----HHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhcCCCCEEEEcCCCCCC
Confidence            9999988    7999999999996664    5667788899999999988889999999999864 78999999999999


Q ss_pred             ccccCHHHHHHHHHhcCCEEEEecCCcCCcc-c--ccCCCCCccEEEecCcCcCCCCc--ceEEEEcccccccCCCcccC
Q 017640          222 ASILPIEEIVHWSHDVGAKVLVDACQSVPHM-V--VDVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGG  296 (368)
Q Consensus       222 G~~~~l~~i~~l~~~~g~~li~D~a~~~~~~-~--~~~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~~~~~g  296 (368)
                      |.++|.+++.++++..+.++|+|++|..-.. .  ..+...+..+++.|+|| +|.+|  +||+++++++++.+......
T Consensus       167 G~~~~~~~~~~i~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK-~~~~GlRiG~~i~~~~~i~~~~~~~~~  245 (356)
T PRK04870        167 GNLFDDADVERIIEAAPGLVVVDEAYQPFAGDSWLPRLARFPNLLVMRTVSK-LGLAGLRLGYLAGHPAWIAELDKVRPP  245 (356)
T ss_pred             CCCCCHHHHHHHHHHCCCEEEEECCchhhcCcchHHHHhhCCCEEEEecchh-hhhHHHhhhhhhCCHHHHHHHHHccCC
Confidence            9999988888888777889999999862111 1  11223346789999999 89888  99999999888776643321


Q ss_pred             CcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          297 GEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      +                       +.+.....++..+++....  ++...++.++..+++.+.|++.+|+
T Consensus       246 ~-----------------------~~~~~~q~~a~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~  290 (356)
T PRK04870        246 Y-----------------------NVNVLTQATALFALEHVDV--LDAQAAQLRAERTRLAAALAALPGV  290 (356)
T ss_pred             C-----------------------cCCHHHHHHHHHHHhCHHH--HHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            1                       2344444445555543222  5666777788888888888876564

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=99.95  E-value=8.5e-26  Score=195.30  Aligned_cols=277  Identities=16%  Similarity=0.168  Sum_probs=229.9

Q ss_pred             eccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHcc
Q 017640           71 LDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWG  150 (368)
Q Consensus        71 l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~  150 (368)
                      |-..++.-+++.|.+++.+..          ...+++.+.+..+++++-+...|....+...++..+++.+++.++.-+ 
T Consensus        20 L~gPGPsnl~~~V~~A~~~~~----------lgh~sPe~~qIm~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~-   88 (385)
T KOG2862|consen   20 LLGPGPSNLSGRVQEAMSRPS----------LGHMSPEFVQIMDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNL-   88 (385)
T ss_pred             eecCCCcCCCHHHHHhhcCCc----------cccCCHHHHHHHHHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhh-
Confidence            334445566777777764331          235667788999999999999999887767788888899999999888 


Q ss_pred             CCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc-CceEEEEcccccccccccC-HH
Q 017640          151 LSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASILP-IE  228 (368)
Q Consensus       151 ~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~-l~  228 (368)
                         +.|||.|++....-.+..  +...++++|++|..|+.+......++.+++++.+ ++++|+++|..+.||+..| ++
T Consensus        89 ---lePgd~vLv~~~G~wg~r--a~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~  163 (385)
T KOG2862|consen   89 ---LEPGDNVLVVSTGTWGQR--AADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLA  163 (385)
T ss_pred             ---cCCCCeEEEEEechHHHH--HHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCccccccchHHH
Confidence               899999999988776654  6778899999999999888888899999999987 5799999999999999999 78


Q ss_pred             HHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCC-CCcceEEEEcccccccCCCcccCCcceeecccCC
Q 017640          229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCG-PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDH  307 (368)
Q Consensus       229 ~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g-~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~  307 (368)
                      .+.++||+|++++++|.+.++|..++.++++++|+.....+|.+| |+|++++..+++..++++....+.....+.....
T Consensus       164 ~~g~lc~k~~~lllVD~VaSlggt~F~mDewgVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~~~  243 (385)
T KOG2862|consen  164 ISGELCHKHEALLLVDTVASLGGTEFEMDEWGVDVAYTGSQKALGAPAGLSIISFSDKALEAIRDRKTKPVSFYFDILRL  243 (385)
T ss_pred             HHHHHhhcCCeEEEEechhhcCCccceehhhcccEEEecchhhcCCCCCcceeecCHHHHHHHhhccCCceEEEEeHHhh
Confidence            899999999999999999999999999999999999999999655 8899999999988888876665444333222221


Q ss_pred             CCC--CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          308 STF--ADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       308 ~~~--~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      -.+  -..+-+....|+++..++++.+||+.+.++|+++..++.++++++++..|++.
T Consensus       244 ~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~  301 (385)
T KOG2862|consen  244 GNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEAL  301 (385)
T ss_pred             cchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            111  12233666779999999999999999999999999999999999999999874

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=99.95  E-value=3.6e-26  Score=215.10  Aligned_cols=251  Identities=15%  Similarity=0.155  Sum_probs=186.9

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL  144 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~  144 (368)
                      .+.+.|+.+.+. ++|+.+++++.+.+.....+|..           ...++|+.++++++++++ +|++|+|+++++.+
T Consensus        29 ~~~i~l~~nen~~~~~~~v~~a~~~~~~~~~~Yp~~-----------g~~~Lr~aia~~~~~~~~-~I~vt~Gs~e~i~~   96 (366)
T PRK01533         29 HSFVKLASNENPFGCSPRVLDELQKSWLDHALYPDG-----------GATTLRQTIANKLHVKME-QVLCGSGLDEVIQI   96 (366)
T ss_pred             CceEEeCCCCCCCCCCHHHHHHHHHHHHhcCcCCCC-----------CHHHHHHHHHHHhCCCcc-eEEECCCHHHHHHH
Confidence            567999999888 68889999998776543333322           123799999999999875 99999999999999


Q ss_pred             HHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccc
Q 017640          145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI  224 (368)
Q Consensus       145 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~  224 (368)
                      ++.++    +++||.|++.+|.|+.    +...++..|++++.++.+ ++.+|+++|+++++++++++++++|+||||.+
T Consensus        97 ~~~~l----~~~gd~vlv~~P~y~~----~~~~~~~~g~~v~~v~~~-~~~~d~~~l~~~~~~~~~~v~i~~P~NPTG~~  167 (366)
T PRK01533         97 ISRAV----LKAGDNIVTAGATFPQ----YRHHAIIEGCEVKEVALN-NGVYDLDEISSVVDNDTKIVWICNPNNPTGTY  167 (366)
T ss_pred             HHHHh----cCCCCEEEEcCCcHHH----HHHHHHHcCCEEEEeecC-CCCcCHHHHHHHhCcCCcEEEEeCCCCCCCCC
Confidence            99998    8999999999996655    566677789999999985 45689999999998889999999999999999


Q ss_pred             cCHHHHHHHH---HhcCCEEEEecCCcCCcc------ccc-CCCCCccEEEecCcCcCCCCc--ceEEEEcccccccCCC
Q 017640          225 LPIEEIVHWS---HDVGAKVLVDACQSVPHM------VVD-VQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPP  292 (368)
Q Consensus       225 ~~l~~i~~l~---~~~g~~li~D~a~~~~~~------~~~-~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~~  292 (368)
                      ++.+++.+++   ++++ ++|+|++|..-..      .+. +...+..+++.|+||.||.+|  +||+++++++++.+..
T Consensus       168 ~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~~~~~~~l~~  246 (366)
T PRK01533        168 VNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGHEELIEKLNV  246 (366)
T ss_pred             cCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhCCHHHHHHHHH
Confidence            9966555554   4555 6778999862110      111 122346789999999999888  9999999988877664


Q ss_pred             cccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          293 FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       293 ~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      ...                       ....+..+..++..+++...  -.+.+++...+..+++.+.+++.
T Consensus       247 ~~~-----------------------~~~~~~~~q~aa~~~l~~~~--~~~~~~~~~~~~r~~~~~~l~~~  292 (366)
T PRK01533        247 VRL-----------------------PFNVSSLAQKAATIAFGDDE--FIEEIVRVNTEGLRQYESFCKEN  292 (366)
T ss_pred             hcC-----------------------CCCcCHHHHHHHHHHhCCHH--HHHHHHHHHHHHHHHHHHHHHhC
Confidence            321                       12456666666666664211  13445555566666666666554

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.95  E-value=6.8e-26  Score=219.33  Aligned_cols=289  Identities=18%  Similarity=0.194  Sum_probs=212.8

Q ss_pred             CeEEeccCCCCC-CcHHHHHHHHH--HHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHH
Q 017640           67 KLVYLDNAATSQ-KPIAVLKALQN--YYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN  143 (368)
Q Consensus        67 ~~i~l~~~~~~~-~~~~v~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~  143 (368)
                      ...+++.+.+.. .|..+.+....  ....+  +++..  ....+..+.+.+.++++++++|.+.. ++++|+|+|+++.
T Consensus        69 ~~~~lg~g~~~~~~p~~~~~~~~~~~~~~~y--~~~~~--~~~~g~~~~~~e~~~~la~l~g~~~~-~v~~~~g~t~~~~  143 (447)
T PRK00451         69 YPSFLGAGAYDHYIPAVVDHIISRSEFYTAY--TPYQP--EISQGTLQAIFEYQTMICELTGMDVA-NASMYDGATALAE  143 (447)
T ss_pred             CcccCcccccCCcCcHHHHHHHhchhHHHhc--CCCCC--ccchHHHHHHHHHHHHHHHHhCCCcc-eEEecCcHHHHHH
Confidence            445666665553 34444444322  22222  22111  12344567777888999999999865 8999999999999


Q ss_pred             HHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEccccccccc
Q 017640          144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLAS  223 (368)
Q Consensus       144 ~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~  223 (368)
                      .++.++   ..++||+|++++++|+++...+..+++..|++++.++.+++ .+|++++++++++++++|+++++ |+||.
T Consensus       144 ~~~~a~---~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~-~~d~~~l~~~i~~~t~~v~l~~p-n~tG~  218 (447)
T PRK00451        144 AALMAV---RITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYEDG-VTDLEALEAAVDDDTAAVVVQYP-NFFGV  218 (447)
T ss_pred             HHHHHH---HhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCCC-CCCHHHHHHhcCCCeEEEEEECC-CCCCe
Confidence            998887   24789999999999999888888777788999999999887 89999999999999999999998 89999


Q ss_pred             ccCHHHHHHHHHhcCCEEEE--ecCCcCCcccccCCCCCccEEEecCcCc-----CCCCcceEEEEcccccccCCCcccC
Q 017640          224 ILPIEEIVHWSHDVGAKVLV--DACQSVPHMVVDVQGLDADFLVASSHKM-----CGPTGIGFLFGKSDLLSAMPPFLGG  296 (368)
Q Consensus       224 ~~~l~~i~~l~~~~g~~li~--D~a~~~~~~~~~~~~~~~d~~~~s~~K~-----~g~~G~G~l~~~~~li~~l~~~~~g  296 (368)
                      +.|+++|.++|+++|+++++  |.. +.|... ....+++|++++|.+|+     +|++|+|++++++++++.+.+...|
T Consensus       219 v~~l~~I~~~a~~~~~~~iv~~d~~-~~g~~~-~~~~~~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g  296 (447)
T PRK00451        219 IEDLEEIAEIAHAGGALFIVGVDPV-SLGLLK-PPGEYGADIVVGEGQPLGIPLSFGGPYLGFFATRKKLVRQMPGRLVG  296 (447)
T ss_pred             eCCHHHHHHHHHHCCCEEEEEcChH-HhccCC-CcccCCCCEEEECCCcCCCCCCCCCCCchHHHhhHHHHhhCCCCEee
Confidence            99999999999999999988  544 344432 23567899999987774     5666899999999999998888777


Q ss_pred             CcceeecccCC---CCCCCCCCCCCCCCCCHHH-----HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          297 GEMISDVFLDH---STFADPPSRFEAGTPAIGE-----AIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       297 ~~~~~~~~~~~---~~~~~~~~~~~~gt~~~~~-----~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      ++........+   ........+++.++.++..     ..+...+++++.+.|++++.++..++++++.+.|.+++|++
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~  375 (447)
T PRK00451        297 ETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEIGGVE  375 (447)
T ss_pred             eecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcCCEE
Confidence            74322110000   0112223455555655532     23344456667777899999999999999999999887764

>PLN00175 aminotransferase family protein; Provisional

Probab=99.95  E-value=1.3e-25  Score=214.76  Aligned_cols=259  Identities=18%  Similarity=0.137  Sum_probs=190.6

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----CCC--CCCcEEEeCCH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS--DSGEIVFTKNA  138 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~--~~~~v~~t~g~  138 (368)
                      .+.+.|..+.+. ++++.+.+++.+.+... ..    .|..    .....++|+++++++    |.+  ++++|++|+|+
T Consensus        54 ~~~i~l~~G~P~~~~~~~~~~~~~~~~~~~-~~----~Y~~----~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~  124 (413)
T PLN00175         54 HGAINLGQGFPNFDGPDFVKEAAIQAIRDG-KN----QYAR----GFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGC  124 (413)
T ss_pred             CCeEecCCCCCCCCCCHHHHHHHHHHHhcC-CC----CcCC----CCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCH
Confidence            568999998877 55788888888877641 11    1111    112235556666555    543  32369999999


Q ss_pred             HHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC-CCCCCHHHHHHhcccCceEEEEccc
Q 017640          139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHHI  217 (368)
Q Consensus       139 t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~  217 (368)
                      ++|+..++.++    +++||+|++.+|.|+.    +...++..|++++.+++++ ++.+|++.|++++.+++++|+++++
T Consensus       125 ~~al~~~~~~l----~~~gd~Vlv~~P~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~~~k~i~i~~p  196 (413)
T PLN00175        125 TEAIAATILGL----INPGDEVILFAPFYDS----YEATLSMAGAKIKTVTLRPPDFAVPEDELKAAFTSKTRAILINTP  196 (413)
T ss_pred             HHHHHHHHHHh----CCCCCEEEEeCCCchh----HHHHHHHcCCEEEEEECCcccCCCCHHHHHHhcCcCceEEEecCC
Confidence            99999999988    8999999999997776    4555667799999999874 5788999999999889999999999


Q ss_pred             ccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc-----cc-cCCC-CCccEEEecCcCcCCCCc--ceEEEEccc
Q 017640          218 SNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM-----VV-DVQG-LDADFLVASSHKMCGPTG--IGFLFGKSD  285 (368)
Q Consensus       218 ~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~-----~~-~~~~-~~~d~~~~s~~K~~g~~G--~G~l~~~~~  285 (368)
                      +||||.+++   +++|.++|++||+++|+|++|.....     ++ ++.. .+..++++|+||.||.+|  +||++++++
T Consensus       197 ~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~v~~~~  276 (413)
T PLN00175        197 HNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPH  276 (413)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCcchheeeeEeCHH
Confidence            999999998   67889999999999999999874221     11 2221 246789999999999888  999999999


Q ss_pred             ccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          286 LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       286 li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +++.+.....                     +...+.+.+...++..+++..+. -++.++++.++..+.+.+.|.+.
T Consensus       277 l~~~l~~~~~---------------------~~~~~~s~~~Q~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~~  332 (413)
T PLN00175        277 LTWGVRQAHS---------------------FLTFATATPMQWAAVAALRAPES-YYEELKRDYSAKKDILVEGLKEV  332 (413)
T ss_pred             HHHHHHHHHh---------------------hccCCCCHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHHHHHHHHHHC
Confidence            8877653321                     11124455556666666643222 25667777888888888888775

>PRK06207 aspartate aminotransferase; Provisional

Probab=99.95  E-value=1.2e-25  Score=214.55  Aligned_cols=267  Identities=16%  Similarity=0.147  Sum_probs=186.8

Q ss_pred             CCeEEeccCCCC--CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC-CC-CcEEEeCCHHHH
Q 017640           66 KKLVYLDNAATS--QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-DS-GEIVFTKNATEA  141 (368)
Q Consensus        66 ~~~i~l~~~~~~--~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~-~~v~~t~g~t~a  141 (368)
                      ++.++|+.+...  .+++.+.+++.+.+.....    ..|....+..++.+.+.+.+++.+|.+ .+ ++|++|+|++++
T Consensus        39 ~~~i~l~~g~~~~~~p~~~~~~~~~~~~~~~~~----~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~a  114 (405)
T PRK06207         39 GRPVDFSHGDVDAHEPTPGAFELFSAGVERGGV----QAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGA  114 (405)
T ss_pred             CCceecCCcCCCCCCCCHHHHHHHHHHHhcCCC----ccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHH
Confidence            567899988766  3667888888777653211    011111122444555666666666864 22 589999999999


Q ss_pred             HHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC-----CCCCCCHHHHHHhcccCceEEEEcc
Q 017640          142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN-----DDESPDLDKLKEMLSRKTKLVVIHH  216 (368)
Q Consensus       142 ~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~-----~~~~~d~~~l~~~l~~~~~~v~~~~  216 (368)
                      +..++.++    +++||+|++.+|.|+.    +...++..|++++.++++     .++.+|++.|++++.+++++|++++
T Consensus       115 l~~~~~~l----~~~Gd~Vlv~~P~y~~----~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~  186 (405)
T PRK06207        115 LFLAVAAT----VARGDKVAIVQPDYFA----NRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKAGVRVFLFSN  186 (405)
T ss_pred             HHHHHHHh----cCCCCEEEEeCCCchh----HHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhhcCeEEEECC
Confidence            99999988    8999999999998877    445566779999999986     2478899999999988899999999


Q ss_pred             cccccccccC---HHHHHHHHHhcCCEEEEecCCcCCc----c--cc-cCC-CCCccEEEecCcCcCCCCc--ceEEEEc
Q 017640          217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----M--VV-DVQ-GLDADFLVASSHKMCGPTG--IGFLFGK  283 (368)
Q Consensus       217 ~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~----~--~~-~~~-~~~~d~~~~s~~K~~g~~G--~G~l~~~  283 (368)
                      |+||||.+++   +++|+++|++||++||+|++|..-.    .  ++ .+. ..+..+++.|+||.||.+|  +||++.+
T Consensus       187 P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ii~~  266 (405)
T PRK06207        187 PNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRLGVAFGS  266 (405)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccceEEEEcC
Confidence            9999999999   6788889999999999999998421    1  11 111 1245689999999999888  9999999


Q ss_pred             ccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          284 SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       284 ~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +++++.+......                    +.. ..+.....++..+++.-.. -++...++..+..+++.+.|.++
T Consensus       267 ~~l~~~~~~~~~~--------------------~~~-~~~~~~q~a~~~~l~~~~~-~~~~~~~~~~~~r~~l~~~L~~~  324 (405)
T PRK06207        267 PAIIDRMEKLQAI--------------------VSL-RAAGYSQAVLRTWFSEPDG-WMKDRIARHQAIRDDLLRVLRGV  324 (405)
T ss_pred             HHHHHHHHHHHhH--------------------hcc-CCCHHHHHHHHHHHhCcHH-HHHHHHHHHHHHHHHHHHHHhcC
Confidence            9888776643210                    001 2233334444444431101 13444455566677777777765


Q ss_pred             cCC
Q 017640          364 HNT  366 (368)
Q Consensus       364 ~g~  366 (368)
                      +++
T Consensus       325 ~~~  327 (405)
T PRK06207        325 EGV  327 (405)
T ss_pred             CCc
Confidence            443

>PRK07324 transaminase; Validated

Probab=99.95  E-value=1.9e-26  Score=217.79  Aligned_cols=260  Identities=17%  Similarity=0.176  Sum_probs=186.6

Q ss_pred             CCCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcC-CCCCCcEEEeCCHHHHH
Q 017640           65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN-ASDSGEIVFTKNATEAI  142 (368)
Q Consensus        65 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~-~~~~~~v~~t~g~t~a~  142 (368)
                      +.+++.|.-+... +.|+.+ ++..+.+.....         ++.......++|+.++++++ .++ ++|++|+|+++|+
T Consensus        25 ~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~---------~Y~~~~G~~~lr~~ia~~~~~~~~-~~vi~t~G~~~al   93 (373)
T PRK07324         25 ESCIDSLTLEELLALAGKNP-EAFYQELGQKKL---------TYGWIEGSPEFKEAVASLYQNVKP-ENILQTNGATGAN   93 (373)
T ss_pred             cCCCCCCcHHHHHhccCcch-HHHHHHHhcCCc---------cCCCCCCCHHHHHHHHHHhcCCCh-hhEEEcCChHHHH
Confidence            4678888877766 445555 776666553210         01111223489999999886 444 5999999999999


Q ss_pred             HHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC--CCCCHHHHHHhcccCceEEEEcccccc
Q 017640          143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLVVIHHISNM  220 (368)
Q Consensus       143 ~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~l~~~~~~v~~~~~~n~  220 (368)
                      .+++.++    +++||+|++..|.|.+    +...++..|++++.++++++  +.+|++++++.+.+++++|++++++||
T Consensus        94 ~~~~~~l----~~~gd~Vl~~~P~y~~----~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~kli~i~~p~NP  165 (373)
T PRK07324         94 FLVLYAL----VEPGDHVISVYPTYQQ----LYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVRPNTKLICINNANNP  165 (373)
T ss_pred             HHHHHHh----CCCCCEEEEcCCCchh----HHHHHHHcCCEEEEEecccccCCCCCHHHHHHhCCCCCcEEEEeCCCCC
Confidence            9999998    8999999999998776    44556777999999998753  568999999999889999999999999


Q ss_pred             cccccC---HHHHHHHHHhcCCEEEEecCCcCCcc---cccC-CCCCccEEEecCcCcCCCCc--ceEEEEcccccccCC
Q 017640          221 LASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVDV-QGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMP  291 (368)
Q Consensus       221 tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~---~~~~-~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~  291 (368)
                      ||.+++   +++|+++|++||+++|+|++|..-..   ..++ ...+..+++.|+||.||.+|  +||+++++++++.++
T Consensus       166 tG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~~~~~~~I~~~s~SK~~~~~G~RiG~i~~~~~li~~~~  245 (373)
T PRK07324        166 TGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIADLYEKGISTNSMSKTYSLPGIRVGWIAANEEVIDILR  245 (373)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChhhccCCEEEEecchhhcCCccceeEEEecCHHHHHHHH
Confidence            999999   88999999999999999999863111   0111 11235688899999999888  899999988887766


Q ss_pred             CcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcC
Q 017640          292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHN  365 (368)
Q Consensus       292 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g  365 (368)
                      .......                     -+.+..+..++..+++..+. -++..++..++..+.+.+.+.+.++
T Consensus       246 ~~~~~~~---------------------~~~~~~~q~~a~~~l~~~~~-~l~~~~~~~~~~~~~l~~~l~~~~~  297 (373)
T PRK07324        246 KYRDYTM---------------------ICAGVFDDMLASLALEHRDA-ILERNRKIVRTNLAILDEWVAKEPR  297 (373)
T ss_pred             HHhCcEE---------------------ecCChHHHHHHHHHHcCHHH-HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            4432100                     12333444444445543222 2455566666677777777776544

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.95  E-value=1.7e-25  Score=214.67  Aligned_cols=264  Identities=15%  Similarity=0.157  Sum_probs=191.2

Q ss_pred             CCeEEeccCCCC-----CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC-----CCCcEEEe
Q 017640           66 KKLVYLDNAATS-----QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-----DSGEIVFT  135 (368)
Q Consensus        66 ~~~i~l~~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-----~~~~v~~t  135 (368)
                      ..+|+|+.+.+.     ++++.+.+++.+.+.....+.+        .......++|++++++++..     ++++|++|
T Consensus        52 ~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~~Y--------~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it  123 (430)
T PLN00145         52 RPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSY--------STCVGLLPARRAIAEYLSRDLPYELSTDDIYLT  123 (430)
T ss_pred             CCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCCCC--------CCCccCHHHHHHHHHHHhhccCCCCChhhEEEe
Confidence            579999999763     5678899999888764211111        11233447888888888542     23599999


Q ss_pred             CCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC--CCCCCCHHHHHHhcccCceEEE
Q 017640          136 KNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDESPDLDKLKEMLSRKTKLVV  213 (368)
Q Consensus       136 ~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~l~~~~~~v~  213 (368)
                      +|+++|+.+++.++    .++||+|++++|.|+.    +...+...|++++.+++.  .++.+|++.+++.+++++++++
T Consensus       124 ~G~~~al~l~~~~l----~~~Gd~Vlv~~P~y~~----y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~  195 (430)
T PLN00145        124 AGCAQAIEIIMSVL----AQPGANILLPRPGYPL----YEARAVFSGLEVRHFDLLPERGWEVDLEGVEALADENTVAMV  195 (430)
T ss_pred             CCHHHHHHHHHHHh----cCCCCEEEEcCCCCcc----HHHHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCcCceEEE
Confidence            99999999999998    7899999999998887    344556679999999875  3478999999999999999999


Q ss_pred             EcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCc------ccc-cCCCCCccEEEecCcCcCCCCc--ceEEE
Q 017640          214 IHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH------MVV-DVQGLDADFLVASSHKMCGPTG--IGFLF  281 (368)
Q Consensus       214 ~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~------~~~-~~~~~~~d~~~~s~~K~~g~~G--~G~l~  281 (368)
                      +++|+||||.++|   +++|.++|++||++||+|++|..-.      .++ .+......++++|+||.|+.+|  +||++
T Consensus       196 i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG~RlG~iv  275 (430)
T PLN00145        196 IINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPGWRLGWIA  275 (430)
T ss_pred             EeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEeccccccCCCCeeEEEEE
Confidence            9999999999999   7888999999999999999987321      111 1222346789999999999999  99999


Q ss_pred             Ec--cccccc------CCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Q 017640          282 GK--SDLLSA------MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWI  353 (368)
Q Consensus       282 ~~--~~li~~------l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~  353 (368)
                      +.  +.+++.      ++....                      ....++...+.++..+++.-.+.-.+..+++.++.+
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~  333 (430)
T PLN00145        276 TCDPNGILKETKVVDSIRNYLN----------------------ISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKETA  333 (430)
T ss_pred             EecchhhhhhhHHHHHHHHHhc----------------------ccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            73  333322      111110                      011234555555555555311223566777788888


Q ss_pred             HHHHHHHHhhcCCC
Q 017640          354 ICSIIVIQERHNTT  367 (368)
Q Consensus       354 ~~l~~~l~~~~g~t  367 (368)
                      +++.+.|.+++|++
T Consensus       334 ~~~~~~L~~~~g~~  347 (430)
T PLN00145        334 DICYEKIKEIKCIT  347 (430)
T ss_pred             HHHHHHHhcCCCCC
Confidence            88888888876653

>PRK06290 aspartate aminotransferase; Provisional

Probab=99.95  E-value=2e-25  Score=212.92  Aligned_cols=256  Identities=16%  Similarity=0.210  Sum_probs=186.0

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHh--hccCCCCcchhhHHHHHHHHHHHHHHHHHc----CC---CCCCcEEEe
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAY--NSNVHRGIHFLSAKATDEYELARKKVAAFI----NA---SDSGEIVFT  135 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~---~~~~~v~~t  135 (368)
                      .+++.|+.+.+. .+++.+.+++.+.+...  ..++.           ....++|+++++++    |.   +++++|++|
T Consensus        44 ~~~i~L~~g~p~~~~~~~~~~~l~~~~~~~~~~~Y~~-----------~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it  112 (410)
T PRK06290         44 MELIDMGVGEPDEMADESVVEVLCEEAKKPENRGYAD-----------NGIQEFKEAAARYMEKVFGVKDIDPVTEVIHS  112 (410)
T ss_pred             CCeEEcCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC-----------CCcHHHHHHHHHHHHHHcCCCcCCCcceEEEc
Confidence            568999998877 46777888877655321  11111           12336777777765    53   333379999


Q ss_pred             CCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC--CCCCHHHHHHhcccCceEEE
Q 017640          136 KNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLVV  213 (368)
Q Consensus       136 ~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~l~~~~~~v~  213 (368)
                      +|+++++..++.++    +++||.|++++|.|+.    +...++..|++++.++++++  +.+|++.+++++.+++++|+
T Consensus       113 ~Gs~~al~~~~~~~----~~~gd~Vlv~~P~y~~----~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~  184 (410)
T PRK06290        113 IGSKPALAMLPSCF----INPGDVTLMTVPGYPV----TGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKEKAKLLY  184 (410)
T ss_pred             cCHHHHHHHHHHHh----CCCCCEEEEeCCCCcc----HHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhcccceEEE
Confidence            99999999999988    8999999999998877    44556667999999999753  66799999999988899999


Q ss_pred             EcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc-----cc-cCCC-CCccEEEecCcCcCCCCc--ceEEE
Q 017640          214 IHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM-----VV-DVQG-LDADFLVASSHKMCGPTG--IGFLF  281 (368)
Q Consensus       214 ~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~-----~~-~~~~-~~~d~~~~s~~K~~g~~G--~G~l~  281 (368)
                      +++|+||||.+++   +++|.++|++||++||+|++|.....     ++ .+.. .+.++++.|+||.+|.+|  +||++
T Consensus       185 l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~ii  264 (410)
T PRK06290        185 LNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVV  264 (410)
T ss_pred             EECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhcCCchhheEeEE
Confidence            9999999999999   67888889999999999999884221     11 1221 246799999999999888  99999


Q ss_pred             EcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Q 017640          282 GKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQ  361 (368)
Q Consensus       282 ~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~  361 (368)
                      +++++++.+.......                    .. +.+.+...++..+++.-.  -.+.++++..+..+++.+.|+
T Consensus       265 ~~~~l~~~l~~~~~~~--------------------~~-~~~~~~q~aa~~~l~~~~--~~~~~~~~~~~~~~~l~~~L~  321 (410)
T PRK06290        265 GNELIVKAFATVKDNN--------------------DS-GQFIAIQKAGIYALDHPE--ITEKIREKYSRRLDKLVKILN  321 (410)
T ss_pred             eCHHHHHHHHHHHhcc--------------------cc-CCcHHHHHHHHHHhhCcH--HHHHHHHHHHHHHHHHHHHHH
Confidence            9998887665332211                    11 223334444444443211  145667777788888888887


Q ss_pred             hh
Q 017640          362 ER  363 (368)
Q Consensus       362 ~~  363 (368)
                      +.
T Consensus       322 ~~  323 (410)
T PRK06290        322 EV  323 (410)
T ss_pred             hC
Confidence            64

>PLN02187 rooty/superroot1

Probab=99.94  E-value=1.8e-25  Score=216.08  Aligned_cols=264  Identities=14%  Similarity=0.160  Sum_probs=189.2

Q ss_pred             CCeEEeccCCCC-----CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcC------CCCCCcEEE
Q 017640           66 KKLVYLDNAATS-----QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN------ASDSGEIVF  134 (368)
Q Consensus        66 ~~~i~l~~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------~~~~~~v~~  134 (368)
                      +++++|+.+.+.     ..++.+.+++.+.+.....+    .    +.......++|+++|++++      +++ ++|++
T Consensus        66 ~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~~~~~----~----Y~~~~G~~~lR~aiA~~~~~~~~~~~~~-~~I~i  136 (462)
T PLN02187         66 KTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSGKGN----S----YGPGAGILPARRAVADYMNRDLPHKLTP-EDIFL  136 (462)
T ss_pred             CCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhCCCCC----C----CCCCCChHHHHHHHHHHHHHhcCCCCCc-ccEEE
Confidence            789999999654     34567888888776532111    1    1112234468888888874      334 59999


Q ss_pred             eCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC--CCCCCCHHHHHHhcccCceEE
Q 017640          135 TKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDESPDLDKLKEMLSRKTKLV  212 (368)
Q Consensus       135 t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~l~~~~~~v  212 (368)
                      |+|+++++.+++.++    +++||.|++++|+|+.    +...++..|++++.+++.  .++.+|+++|+++++++++++
T Consensus       137 t~G~~~al~~~~~~l----~~pGd~Vlv~~P~y~~----y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~~~~~v  208 (462)
T PLN02187        137 TAGCNQGIEIVFESL----ARPNANILLPRPGFPH----YDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADENTVAM  208 (462)
T ss_pred             eCCHHHHHHHHHHHh----cCCCCEEEEeCCCCcc----HHHHHHHcCCEEEEEeCccccCCccCHHHHHHhcCCCcEEE
Confidence            999999999999998    8999999999998887    444566779999999985  358899999999998899999


Q ss_pred             EEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc------cc-cCCCCCccEEEecCcCcCCCCc--ceEE
Q 017640          213 VIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM------VV-DVQGLDADFLVASSHKMCGPTG--IGFL  280 (368)
Q Consensus       213 ~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~------~~-~~~~~~~d~~~~s~~K~~g~~G--~G~l  280 (368)
                      ++++|+||||.+++   +++|+++|++||++||+|++|..-..      ++ .+......++++|+||.|+.+|  +||+
T Consensus       209 ~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~pGlRiG~~  288 (462)
T PLN02187        209 VVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVPGWKIGWI  288 (462)
T ss_pred             EEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhcCCccceeEEE
Confidence            99999999999999   78899999999999999999973111      11 1122234688899999999999  9999


Q ss_pred             EEc-cc-c---cccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 017640          281 FGK-SD-L---LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIIC  355 (368)
Q Consensus       281 ~~~-~~-l---i~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~  355 (368)
                      ++. ++ +   ++.+......+.                  . ...++.....++..+++.....-++.+++..++..++
T Consensus       289 v~~~p~~~~~~~~~~~~~~~~~~------------------~-~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~  349 (462)
T PLN02187        289 ALNDPEGVFETTKVLQSIKQNLD------------------V-TPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDL  349 (462)
T ss_pred             EecCchhHHHHHHHHHHHHHhcc------------------c-cCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            984 32 2   223322211000                  0 1124556666666666421112256667777788888


Q ss_pred             HHHHHHhhcC
Q 017640          356 SIIVIQERHN  365 (368)
Q Consensus       356 l~~~l~~~~g  365 (368)
                      +.+.|.++++
T Consensus       350 l~~~L~~~~~  359 (462)
T PLN02187        350 VCDRLKDIPC  359 (462)
T ss_pred             HHHHHhhCCC
Confidence            8888887644

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.94  E-value=9.1e-26  Score=217.96  Aligned_cols=274  Identities=15%  Similarity=0.145  Sum_probs=209.7

Q ss_pred             CCeEEeccCCCCCCcHHHHHHHHHHHHHhh--ccCCCCcchhhHHHHHHHHH-HHHHHHHHcCCCCCCcEEEe---CCHH
Q 017640           66 KKLVYLDNAATSQKPIAVLKALQNYYEAYN--SNVHRGIHFLSAKATDEYEL-ARKKVAAFINASDSGEIVFT---KNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~r~~la~~~~~~~~~~v~~t---~g~t  139 (368)
                      .+.++|-.+. ..+++.+++++...+...+  ++|. +.+..+....+.+++ .|+.++++||++++ ++.++   +|++
T Consensus        34 ~~~l~l~~se-n~~s~~v~~~~~~~l~~~y~~g~p~-s~~~~g~~~~~~iE~~ar~~~a~lf~a~~~-~~~~~~~~~sgt  110 (452)
T PTZ00094         34 IEGLELIASE-NFTSRAVLECLGSCFTNKYAEGLPG-NRYYGGNEVVDKIENLCQKRALEAFGLDPE-EWGVNVQPYSGS  110 (452)
T ss_pred             HcCeeEeccc-ccCCHHHHHHhcchhhccccCCCCC-ccccccchHHHHHHHHHHHHHHHHhCCCcc-cceeecCCCchH
Confidence            3456665544 4678889999999887765  6775 466666666677764 89999999999765 66666   7899


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHH------HcCCEEEEEeCCCCCCCCHHHHHHhccc-CceEE
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQ------KTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLV  212 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~------~~g~~v~~v~~~~~~~~d~~~l~~~l~~-~~~~v  212 (368)
                      +++..++.++    +++||+|++.+.+|.++...+....+      ..+.++..++++.+|.+|+++|++++++ ++++|
T Consensus       111 ~an~~v~~al----~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~~~~~lv  186 (452)
T PTZ00094        111 PANFAVYTAL----LQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLIDYDKLEELAKAFRPKLI  186 (452)
T ss_pred             HHHHHHHHHh----cCCCCEEEecccccCCcccccccccccccccceeeeeeeecccCCCCCcCHHHHHHHHHHhCCCEE
Confidence            9999999998    78999999999999887654432211      1123445566677799999999999964 67777


Q ss_pred             EEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCC---CCccEEEecCcCcC-CCCcceEEEEcccccc
Q 017640          213 VIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQG---LDADFLVASSHKMC-GPTGIGFLFGKSDLLS  288 (368)
Q Consensus       213 ~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~---~~~d~~~~s~~K~~-g~~G~G~l~~~~~li~  288 (368)
                      ++.  ++.+|...|+++|.++|+++|+++++|++|++|.++.+...   .++|++++|+||++ ||.| |++++++++++
T Consensus       187 i~~--~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~~~D~l~~S~hK~l~GP~G-g~l~~~~~~~~  263 (452)
T PTZ00094        187 IAG--ASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHKSLRGPRS-GLIFYRKKVKP  263 (452)
T ss_pred             EEe--CCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCCCCCCcEEEcCCccCCCCCCc-eEEEEecccch
Confidence            764  34599999999999999999999999999999998665421   36999999999954 7887 88888877655


Q ss_pred             cCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          289 AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       289 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      .+.+......           +    ..+ .|+++...++++.++++++...+.+.+++++.++++++.+.|.+. |+
T Consensus       264 ~l~~~~~~~~-----------~----p~~-~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~-g~  324 (452)
T PTZ00094        264 DIENKINEAV-----------F----PGL-QGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKR-GY  324 (452)
T ss_pred             HHHHhhcccc-----------C----CCC-CCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhC-Cc
Confidence            4332211000           0    012 478999999999999999988788999999999999999999874 54

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.94  E-value=2.7e-25  Score=211.74  Aligned_cols=260  Identities=15%  Similarity=0.172  Sum_probs=187.4

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----CCC--CCCcEEEeCCH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS--DSGEIVFTKNA  138 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~--~~~~v~~t~g~  138 (368)
                      ++++.|+.+.+. +.|+.+.+++.+.+.....    ..    +.......++|+++++++    |.+  +++.|++|+|+
T Consensus        35 ~~~i~l~~g~p~~~~p~~~~~~~~~~~~~~~~----~~----Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~  106 (394)
T PRK05942         35 LDLIDLGMGNPDGAAPQPVIEAAIAALADPQN----HG----YPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGS  106 (394)
T ss_pred             CCeEEcCCCCCCCCCCHHHHHHHHHHHhCCCC----cc----CCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccCh
Confidence            567888887655 3456677776665542100    01    111222336777777766    543  33258899999


Q ss_pred             HHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC--CCCCHHHHHHhcccCceEEEEcc
Q 017640          139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLVVIHH  216 (368)
Q Consensus       139 t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~l~~~~~~v~~~~  216 (368)
                      ++++..++.++    +++||+|++++|+|+.....    +...|++++.++++.+  +.+|++++++.+.+++++|++++
T Consensus       107 ~~al~~~~~~~----~~~gd~Vlv~~P~y~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~  178 (394)
T PRK05942        107 KEGLTHLALAY----VNPGDVVLVPSPAYPAHFRG----PLIAGAQIYPIILKPENDWLIDLSSIPEEVAQQAKILYFNY  178 (394)
T ss_pred             HHHHHHHHHHh----CCCCCEEEEcCCCCcchHHH----HHHcCCEEEEeecCCccCCccCHHHHHHhccccceEEEEcC
Confidence            99999999988    89999999999999885433    3456999999998743  56899999999988999999999


Q ss_pred             cccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc------cc-cCCC-CCccEEEecCcCcCCCCc--ceEEEEc
Q 017640          217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM------VV-DVQG-LDADFLVASSHKMCGPTG--IGFLFGK  283 (368)
Q Consensus       217 ~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~------~~-~~~~-~~~d~~~~s~~K~~g~~G--~G~l~~~  283 (368)
                      |+||||.+++   +++|.++|++||+++|+|++|.....      ++ ++.. .+..++++|+||.||.+|  +||++++
T Consensus       179 P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~~  258 (394)
T PRK05942        179 PSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVGN  258 (394)
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhhheeeeecC
Confidence            9999999999   77899999999999999999873211      11 1221 235678899999999888  9999999


Q ss_pred             ccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          284 SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       284 ~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +++++.++.....                     ...+.+.....++..+++...+ .++.++++.++..+++.+.|.+.
T Consensus       259 ~~l~~~l~~~~~~---------------------~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~L~~~  316 (394)
T PRK05942        259 RHIIQGLRTLKTN---------------------LDYGIFSALQKAAETALQLPDS-YLQQVQERYRTRRDFLIQGLGEL  316 (394)
T ss_pred             HHHHHHHHHHHhh---------------------cccCCCHHHHHHHHHHHhCcHH-HHHHHHHHHHHHHHHHHHHHHHC
Confidence            9988877644321                     0113344455566666664333 36677888888888888888764

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.94  E-value=1.2e-25  Score=211.01  Aligned_cols=248  Identities=18%  Similarity=0.235  Sum_probs=191.8

Q ss_pred             CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCC
Q 017640           76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLK  155 (368)
Q Consensus        76 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~  155 (368)
                      .+.+|+.+++++.++.+.+.            ...+..+++++.+++++|.+   ++++|+|+|+|+.+++.++    ++
T Consensus        22 ~s~~~~~v~~a~~~~~~~~~------------~~~~~~~~~~~~~a~~~g~~---~~~~~~g~t~al~~al~al----~~   82 (363)
T TIGR01437        22 VSTVSDEVADAQKRGAQNYF------------EIKELVNKTGEYIANLLGVE---DAVIVSSASAGIAQSVAAV----IT   82 (363)
T ss_pred             CCCCCHHHHHHHHHHHhcCC------------CHHHHHHHHHHHHHHhhCCC---eEEEEcCHHHHHHHHHHHH----hc
Confidence            34689999999998865431            13577889999999999985   6799999999999999998    77


Q ss_pred             CCC---------------EEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEE-Eccccc
Q 017640          156 SGD---------------EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVV-IHHISN  219 (368)
Q Consensus       156 ~gd---------------~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~-~~~~~n  219 (368)
                      +||               +|+++.|.+.....++.......|+++++++.  ++.+|+++++++++++|++++ +++++|
T Consensus        83 ~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~--~~~~d~~~le~ai~~~t~ai~~v~~~~~  160 (363)
T TIGR01437        83 RGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGY--ANECSAEQLEAAITEKTAAILYIKSHHC  160 (363)
T ss_pred             CCCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcC--CCCCCHHHHHHhcChhceEEEEEecCCC
Confidence            887               88888765443322345556677999999986  456899999999999998766 577889


Q ss_pred             ccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcC-cCCCCcceEEEEcccccccCCCcccCCc
Q 017640          220 MLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGE  298 (368)
Q Consensus       220 ~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~G~G~l~~~~~li~~l~~~~~g~~  298 (368)
                      ++|.+.|+++|.++|++||+++++|++|+....  .....+.|++++|+|| +.||. .|+++.++++++.+++...+.+
T Consensus       161 ~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~~--~~~~~g~D~~~~S~~K~l~gp~-~G~l~~~~~~i~~~~~~~~~~~  237 (363)
T TIGR01437       161 VQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDLQ--KYYRLGADLVIYSGAKAIEGPT-SGLVLGKKKYIEWVKLQSKGIG  237 (363)
T ss_pred             CcCCcCCHHHHHHHHHHcCCeEEEECCCCCchH--HHHHcCCCEEEEeCCcccCCCc-eEEEEEcHHHHHHHHhccCCCc
Confidence            999999999999999999999999999983211  1123468999999999 55676 7999988888877655443321


Q ss_pred             ceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          299 MISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                                      ..++.|+   ..++++.++++++.+.+.+.+.++.+. ++++.+.|.+++|++
T Consensus       238 ----------------~~~~~~~---~~~~gl~aAl~~~~~~~~~~~~~~~~~-~~~l~~~L~~i~g~~  286 (363)
T TIGR01437       238 ----------------RAMKVGK---ENILGLTAALEQYLSTGKESGAEMVAK-LTPFIEALNTLKGVS  286 (363)
T ss_pred             ----------------ceeccCH---HHHHHHHHHHHHHHccCcccHHHHHHH-HHHHHHHHhcCCCeE
Confidence                            2334445   337888889999888777777766664 557999999888764

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=99.94  E-value=3.2e-25  Score=205.76  Aligned_cols=254  Identities=17%  Similarity=0.227  Sum_probs=205.0

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL  144 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~  144 (368)
                      ++++.|+.+.+. ++|+.+.+++.+.+..++.+|+.           ...++++++++++|..++++|++++|+++.+..
T Consensus        22 ~~~i~LssNenP~gp~~~~~~~~~~~~~~~~rYPd~-----------~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~   90 (356)
T COG0079          22 PGIIKLSSNENPYGPPPKVIEAIRAALDKLNRYPDP-----------DYRELRAALAEYYGVVDPENVLVGNGSDELIEL   90 (356)
T ss_pred             ccceeecCCCCCCCCCHHHHHHHHHHHHhhccCCCC-----------cHHHHHHHHHHHhCCCCcceEEEcCChHHHHHH
Confidence            458999999988 66799999999988877777753           133899999999994333499999999999999


Q ss_pred             HHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccc
Q 017640          145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI  224 (368)
Q Consensus       145 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~  224 (368)
                      +.+++    +.+||.|++..|+|..    +...++..|++++.|+..+ +.+|++.+.+.+.+++++|++|+|+||||..
T Consensus        91 l~~~~----~~~gd~vl~~~Ptf~~----Y~~~a~~~g~~~~~v~~~~-~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~~  161 (356)
T COG0079          91 LVRAF----VEPGDTVLIPEPTFSM----YEIAAQLAGAEVVKVPLKE-FRLDLDAILAAIRDKTKLVFLCNPNNPTGTL  161 (356)
T ss_pred             HHHHh----hcCCCEEEEcCCChHH----HHHHHHhcCCeEEEecccc-cccCHHHHHHhhhcCCCEEEEeCCCCCCCCC
Confidence            99999    8999999999995555    6777788899999999988 9999999999998899999999999999999


Q ss_pred             cCHHHHHHHHHhc--CCEEEEecCCcCCcc--cccCC-CCCccEEEecCcCcCCCCc--ceEEEEcccccccCCCcccCC
Q 017640          225 LPIEEIVHWSHDV--GAKVLVDACQSVPHM--VVDVQ-GLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGG  297 (368)
Q Consensus       225 ~~l~~i~~l~~~~--g~~li~D~a~~~~~~--~~~~~-~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~~~~~g~  297 (368)
                      ++.++|.++++..  +.+|++||||.--..  .+++- ....-+++-|+||.||.+|  +||++.++++++.+......|
T Consensus       162 ~~~~~l~~l~~~~~~~~~vVvDEAY~eF~~~~~~~l~~~~~nlivlRTfSKa~gLAGlRlGy~ia~~~~i~~l~~vr~p~  241 (356)
T COG0079         162 LPREELRALLEALPEGGLVVIDEAYIEFSPESSLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIANPELIAALNKVRPPF  241 (356)
T ss_pred             CCHHHHHHHHHhCCCCcEEEEeCchhhcCCchhhhhccCCCCEEEEEecHHhhhcchhceeeccCCHHHHHHHHHhcCCC
Confidence            9988888887754  789999999872221  11211 2233577889999999999  999999999999888665432


Q ss_pred             cceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhc
Q 017640          298 EMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERH  364 (368)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~  364 (368)
                                             +.+.++..++.++++.-+  -++...+++.+.++++.+.|+++.
T Consensus       242 -----------------------~v~~~a~~aa~aal~~~~--~~~~~~~~~~~~r~rl~~~l~~~~  283 (356)
T COG0079         242 -----------------------NVSSPALAAAIAALRDAD--YLEESVERIREERERLYAALKALG  283 (356)
T ss_pred             -----------------------CCCHHHHHHHHHHcccHH--HHHHHHHHHHHHHHHHHHHHHhCC
Confidence                                   456666666666666442  367778888888999999988764

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.94  E-value=3.3e-25  Score=211.23  Aligned_cols=260  Identities=14%  Similarity=0.131  Sum_probs=195.0

Q ss_pred             CCCeEEeccCCC-C-CCcHHHHHHHHHHHHHh-hccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHH
Q 017640           65 SKKLVYLDNAAT-S-QKPIAVLKALQNYYEAY-NSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEA  141 (368)
Q Consensus        65 ~~~~i~l~~~~~-~-~~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a  141 (368)
                      +.++++|..+.+ + ..++.+++++.+.+..+ ..++. +.+..  +..+...++|+.+|+++|.+   ++++++|+++|
T Consensus        37 g~~~i~~~~~~~lg~~~~~~v~~~~~~~~~~~~~~~~~-s~~~~--G~~~~~~~le~~ia~~~g~~---~~ii~~~~~~a  110 (393)
T TIGR01822        37 GREVLNFCANNYLGLSSHPDLIQAAKDALDEHGFGMSS-VRFIC--GTQDIHKELEAKIAAFLGTE---DTILYASCFDA  110 (393)
T ss_pred             CceEEEeeCCCccccCCCHHHHHHHHHHHHHhCCCCCC-cCccc--CChHHHHHHHHHHHHHhCCC---cEEEECchHHH
Confidence            356788888875 4 45889999999988875 22222 22222  22566778999999999985   55666888999


Q ss_pred             HHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc------CceEEEEc
Q 017640          142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR------KTKLVVIH  215 (368)
Q Consensus       142 ~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~------~~~~v~~~  215 (368)
                      +..++.++    +++||+|++++++|++....+    +..+.+.+.++     .+|++++++++.+      ++++|+++
T Consensus       111 ~~~~~~~l----~~~gd~vi~~~~~~~s~~~~~----~~~~~~~~~~~-----~~d~~~l~~~i~~~~~~~~~~~~v~~~  177 (393)
T TIGR01822       111 NGGLFETL----LGAEDAIISDALNHASIIDGV----RLCKAKRYRYA-----NNDMADLEAQLKEARAAGARHRLIATD  177 (393)
T ss_pred             HHHHHHHh----CCCCCEEEEeccccHHHHHHH----HhcCCceEEeC-----CCCHHHHHHHHHhhhhcCCCceEEEEe
Confidence            99999888    899999999999999865443    33465554443     2489999988864      78899999


Q ss_pred             ccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccc---------cCCCCCccEEEecCcCcCCCCcceEEEEcccc
Q 017640          216 HISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVV---------DVQGLDADFLVASSHKMCGPTGIGFLFGKSDL  286 (368)
Q Consensus       216 ~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~---------~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~l  286 (368)
                      +++|+||.+.|+++|.++|++||+++++|++|+.|....         ++. .++|++++|+||++++..+||+++++++
T Consensus       178 ~v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~-~~~di~~~s~sK~l~g~r~G~~~~~~~~  256 (393)
T TIGR01822       178 GVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVM-GRVDIITGTLGKALGGASGGFTTARKEV  256 (393)
T ss_pred             CCccCCCCcCCHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCC-CCCeEEEEEChHHhhCCCcEEEEeCHHH
Confidence            999999999999999999999999999999998765421         111 2589999999997765457999999988


Q ss_pred             cccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          287 LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       287 i~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      ++.+++....                  ..+ .++.+...++++..+++.++  ..+.++++..++.+++.+.|.+. |+
T Consensus       257 ~~~l~~~~~~------------------~~~-~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~  314 (393)
T TIGR01822       257 VELLRQRSRP------------------YLF-SNSLPPAVVGASIKVLEMLE--ASNELRDRLWANTRYFRERMEAA-GF  314 (393)
T ss_pred             HHHHHHhCcc------------------cee-cCCCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHc-CC
Confidence            8776542110                  011 24556666667777887764  36778899999999999999774 54

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.94  E-value=5.5e-26  Score=213.12  Aligned_cols=269  Identities=17%  Similarity=0.193  Sum_probs=199.3

Q ss_pred             CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEe-CCHHHHHHHHHHHccCCC
Q 017640           75 ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFT-KNATEAINLVAYSWGLSN  153 (368)
Q Consensus        75 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t-~g~t~a~~~~~~~~~~~~  153 (368)
                      ++...++.|++++.+.....-     .....+..+.+.++++|+.++++++++++++|+|+ .|+|.+++.++.++    
T Consensus        10 GP~~~~~~v~~a~~~~~~~~~-----~~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l----   80 (361)
T TIGR01366        10 GPSKVRLEQLQALTTTAASLF-----GTSHRQAPVKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGL----   80 (361)
T ss_pred             CCcCCCHHHHHHHHhcCcccc-----ccCcCChHHHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhc----
Confidence            345678888888653311110     12244566789999999999999999755588886 66999999999987    


Q ss_pred             CCCCCEEEEcCCCCcccHHHHHHHHHHc--CCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHH
Q 017640          154 LKSGDEVILTVAEHHSAIVPWQLVAQKT--GANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV  231 (368)
Q Consensus       154 ~~~gd~vl~~~~~~~s~~~~~~~~~~~~--g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~  231 (368)
                      +.+ +.+++...+|.+.   +...++..  ..++..++.+++..++.     .+.+++++|+++|..|.||.+.|+++| 
T Consensus        81 ~~~-~~l~i~~G~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~lV~~~h~et~tG~~~pi~~I-  150 (361)
T TIGR01366        81 IEK-KSLHLSFGEFSSK---FAKAVKLAPWLGEPIIVTADPGSAPEP-----QADPGVDVIAWAHNETSTGVAVPVRRP-  150 (361)
T ss_pred             ccc-cccEEecCHHHHH---HHHHHHhhhccCCceEEecCCCCCCCC-----ccCCCCCEEEEcccCCccceecccccc-
Confidence            432 3445555555543   44444442  23677777665443332     356789999999999999999999988 


Q ss_pred             HHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCC-cceEEEEcccccccCCCcccCCcceeecccCCCCC
Q 017640          232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPT-GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTF  310 (368)
Q Consensus       232 ~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~-G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~  310 (368)
                        +|++|+++++|+++++|+.++|+++  +|++++|.||++|++ |++++++++++++++++...++..... +.+...+
T Consensus       151 --~~~~g~~~iVDavqs~g~~~idv~~--~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~~~~~~p~-~~d~~~~  225 (361)
T TIGR01366       151 --EGSDDALVVIDATSGAGGLPVDIAE--TDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIAASGRWVPE-FLSLPTA  225 (361)
T ss_pred             --cccCCCeEEEEcCccccCCCCCHHH--CCEEEEEchhhcCCCCceEEEEECHHHHhhhhcccCCCCCCch-hhhHHHH
Confidence              5889999999999999999999885  899999999988865 588889999999888877766543321 1111111


Q ss_pred             -CCCCCCCCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          311 -ADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       311 -~~~~~~~~~gt~~~~~~~a~~~al~~~~~~-g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                       .........+|+++..++++..+++++.++ |++.+.++..++++++++++.+..+.+
T Consensus       226 ~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~  284 (361)
T TIGR01366       226 VDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYAT  284 (361)
T ss_pred             HhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence             111122346799999999999999999998 699999999999999999999886543

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>PRK07682 hypothetical protein; Validated

Probab=99.94  E-value=1.9e-25  Score=211.78  Aligned_cols=258  Identities=17%  Similarity=0.170  Sum_probs=187.2

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHh-hccCCCCcchhhHHHHHHHHHHHHHHHHHc----CCC--CCCcEEEeCC
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAY-NSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS--DSGEIVFTKN  137 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~--~~~~v~~t~g  137 (368)
                      ++.+.|+.+.+. ..++.+.+++.+.+... ..++      .    .....++|+++++++    |..  ++++|++|+|
T Consensus        20 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~------~----~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G   89 (378)
T PRK07682         20 EGVISLGVGEPDFVTPWNVREASIRSLEQGYTSYT------A----NAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVG   89 (378)
T ss_pred             CCeEEeCCCCCCCCCCHHHHHHHHHHHhcCCCCCC------C----CCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCC
Confidence            357899988876 45667778877765431 1111      1    112335666666666    443  3347999999


Q ss_pred             HHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC--CCCCCHHHHHHhcccCceEEEEc
Q 017640          138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVVIH  215 (368)
Q Consensus       138 ~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~~~~~v~~~  215 (368)
                      +++|+.+++.++    +++||+|++.+|+|+.    +...++..|.+++.++.+.  ++.+|++++++++.+++++++++
T Consensus        90 ~~~al~~~~~~l----~~~gd~vl~~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~  161 (378)
T PRK07682         90 ASQALDVAMRAI----INPGDEVLIVEPSFVS----YAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAITAKTKAILLC  161 (378)
T ss_pred             hHHHHHHHHHHh----CCCCCEEEEeCCCchh----hHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcCcccEEEEEE
Confidence            999999999988    8999999999998886    4445566799999998763  47889999999998899999999


Q ss_pred             ccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc-----cc-cCCC-CCccEEEecCcCcCCCCc--ceEEEEc
Q 017640          216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM-----VV-DVQG-LDADFLVASSHKMCGPTG--IGFLFGK  283 (368)
Q Consensus       216 ~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~-----~~-~~~~-~~~d~~~~s~~K~~g~~G--~G~l~~~  283 (368)
                      +|+||||.+++   +++|.++|++|++++|+|++|.....     ++ .+.. .+..+++.|+||.||.+|  +||++++
T Consensus       162 ~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~  241 (378)
T PRK07682        162 SPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAP  241 (378)
T ss_pred             CCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChhhhhhhhhcC
Confidence            99999999998   78999999999999999999883321     11 1111 246789999999999888  9999999


Q ss_pred             ccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          284 SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       284 ~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +++++.+.....                     +...+.+.....++..+++.... .++.++++.++.++++.+.|.+.
T Consensus       242 ~~~i~~l~~~~~---------------------~~~~~~~~~~q~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~L~~~  299 (378)
T PRK07682        242 VYFSEAMLKIHQ---------------------YSMMCAPTMAQFAALEALRAGND-DVIRMRDSYRKRRNFFVTSFNEI  299 (378)
T ss_pred             HHHHHHHHHHHH---------------------hhccCCCHHHHHHHHHHHhCChH-HHHHHHHHHHHHHHHHHHHHHHC
Confidence            998887764321                     00113344444445455542212 25677777888888888888775

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=2.6e-25  Score=209.39  Aligned_cols=252  Identities=15%  Similarity=0.168  Sum_probs=189.8

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL  144 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~  144 (368)
                      ++.+.|+.+.+. .+++.+.+++.+.+......|..           ...++|++++++++++++ +|++|+|+++++..
T Consensus        29 ~~~i~l~~n~~~~~~~~~v~~a~~~~~~~~~~~p~~-----------g~~~lr~~ia~~~~~~~~-~i~~t~G~~~~l~~   96 (359)
T PRK03158         29 EKIVKLASNENPYGPSPKVKEAIAAHLDELALYPDG-----------YAPELRTKVAKHLGVDEE-QLLFGAGLDEVIQM   96 (359)
T ss_pred             CceEEecCCCCCCCCCHHHHHHHHHHHHHhhcCCCC-----------cHHHHHHHHHHHhCCCHH-HEEECCCHHHHHHH
Confidence            356888877665 46888999988877654322221           244799999999998764 99999999999999


Q ss_pred             HHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccc
Q 017640          145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI  224 (368)
Q Consensus       145 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~  224 (368)
                      ++.++    +++||.|++.+|+|+.    +...+...|++++.++.+ ++.+|++.++++++++++++++++|+||||.+
T Consensus        97 ~~~~~----~~~gd~v~~~~p~y~~----~~~~~~~~g~~~~~~~~~-~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~  167 (359)
T PRK03158         97 ISRAL----LNPGTNTVMAEPTFSQ----YRHNAIIEGAEVREVPLK-DGGHDLEAMLKAIDEQTKIVWICNPNNPTGTY  167 (359)
T ss_pred             HHHHH----hCCCCEEEEcCCCHHH----HHHHHHHcCCeEEEEecC-CCCcCHHHHHHhcCCCCCEEEEeCCCCCCCCC
Confidence            99988    7899999999997766    455566779999999987 67789999999998899999999999999999


Q ss_pred             cCHHHHHHHHHh--cCCEEEEecCCcCCcc----c--cc-CCCCCccEEEecCcCcCCCCc--ceEEEEcccccccCCCc
Q 017640          225 LPIEEIVHWSHD--VGAKVLVDACQSVPHM----V--VD-VQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPF  293 (368)
Q Consensus       225 ~~l~~i~~l~~~--~g~~li~D~a~~~~~~----~--~~-~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~~~  293 (368)
                      +|.++|.++++.  +|+++|+|++|.....    +  +. .+..+..+++.|++|.||.+|  +||+++++++++.+...
T Consensus       168 ~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~  247 (359)
T PRK03158        168 VNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYGIASEELIEKLNIA  247 (359)
T ss_pred             CCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhehhcCCHHHHHHHHHh
Confidence            999998888876  5999999999863221    1  11 122356789999999999888  79999999988776543


Q ss_pred             ccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          294 LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       294 ~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      ...                       ...+..+..++..+++...  -.+.+++..++..+++.+.+.+.
T Consensus       248 ~~~-----------------------~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~l~~~  292 (359)
T PRK03158        248 RPP-----------------------FNTTRIAQYAAIAALEDQA--FLKECVEKNAEGLEQYYAFCKEY  292 (359)
T ss_pred             cCC-----------------------CCCCHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHHHHC
Confidence            210                       1345555565655554211  13455555666667777777664

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=99.94  E-value=3.5e-25  Score=211.16  Aligned_cols=257  Identities=17%  Similarity=0.183  Sum_probs=182.2

Q ss_pred             CCCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----CCC---CCCcEEEeC
Q 017640           65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS---DSGEIVFTK  136 (368)
Q Consensus        65 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~---~~~~v~~t~  136 (368)
                      |.+.+.|+.+.+. ++++.+.+++.+.+.....++..          ....++|+.+++++    |.+   ++++|++|+
T Consensus        28 ~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~Y~~~----------~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~   97 (396)
T PRK09147         28 DLPPISLSIGEPKHPTPAFIKDALAANLDGLASYPTT----------AGLPALREAIAAWLERRYGLPALDPATQVLPVN   97 (396)
T ss_pred             CCCeEecCCCCCCCCCCHHHHHHHHHHhhhhcCCCCC----------CCCHHHHHHHHHHHHHHhCCCcCCccceEEECC
Confidence            4678999998877 56788888888776543222211          11225666666654    643   334899999


Q ss_pred             CHHHHHHHHHHHccCCCCCC---CCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC--CCCCHHHHHHhcccCceE
Q 017640          137 NATEAINLVAYSWGLSNLKS---GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKL  211 (368)
Q Consensus       137 g~t~a~~~~~~~~~~~~~~~---gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~l~~~~~~  211 (368)
                      |+++++..++.++    +++   ||.|++++|.|+.    +...++..|++++.||++++  +.+|++.+++.+.+++++
T Consensus        98 G~~~al~~~~~~l----~~~~~~gd~vlv~~P~y~~----~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~~k~  169 (396)
T PRK09147         98 GSREALFAFAQTV----IDRDGPGPLVVCPNPFYQI----YEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWARTQL  169 (396)
T ss_pred             ChHHHHHHHHHHH----cCCCCCCCEEEEcCCCccc----hHHHHHhcCCEEEEeccCccccCccCHHHHHHHHhhccEE
Confidence            9999999999998    788   8999999998776    45556677999999998743  578999999888778999


Q ss_pred             EEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc-----ccc-------C--CCCCccEEEecCcCcCCC
Q 017640          212 VVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM-----VVD-------V--QGLDADFLVASSHKMCGP  274 (368)
Q Consensus       212 v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~-----~~~-------~--~~~~~d~~~~s~~K~~g~  274 (368)
                      +++++|+||||.+++   +++|+++|++|+++||+|++|..-..     +..       .  ...+..+++.|+||.||.
T Consensus       170 i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~  249 (396)
T PRK09147        170 LFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNV  249 (396)
T ss_pred             EEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCC
Confidence            999999999999998   77888899999999999999874221     110       1  112456999999999998


Q ss_pred             Cc--ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Q 017640          275 TG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKW  352 (368)
Q Consensus       275 ~G--~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l  352 (368)
                      +|  +||+++++++++.+.....                     +...+.+...+.++..++..  ..-+...+++.++.
T Consensus       250 ~GlRiG~~~~~~~l~~~~~~~~~---------------------~~~~~~~~~~q~a~~~~~~~--~~~~~~~~~~~~~~  306 (396)
T PRK09147        250 PGLRSGFVAGDAALLKKFLLYRT---------------------YHGCAMPPAVQAASIAAWND--EAHVRENRALYREK  306 (396)
T ss_pred             ccceeeeecCCHHHHHHHHHHhh---------------------hcccCCCHHHHHHHHHHhcc--hhHHHHHHHHHHHH
Confidence            88  9999999988876653221                     01113344444444344321  11244555566666


Q ss_pred             HHHHHHHHHh
Q 017640          353 IICSIIVIQE  362 (368)
Q Consensus       353 ~~~l~~~l~~  362 (368)
                      .+.+.+.|.+
T Consensus       307 ~~~~~~~L~~  316 (396)
T PRK09147        307 FDAVTPILAP  316 (396)
T ss_pred             HHHHHHHHHH
Confidence            6666666655

>PRK03321 putative aminotransferase; Provisional

Probab=99.94  E-value=2e-25  Score=209.58  Aligned_cols=253  Identities=14%  Similarity=0.155  Sum_probs=188.2

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL  144 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~  144 (368)
                      +++++|+.+..+ .+++.+.+++.+.+.....++.           ....++|+.++++++++++ +|++|+|+++++..
T Consensus        22 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~y~~-----------~g~~~lr~~ia~~~~~~~~-~I~~~~G~~~~l~~   89 (352)
T PRK03321         22 PGAIKLSSNETPFGPLPSVRAAIARAAAGVNRYPD-----------MGAVELRAALAEHLGVPPE-HVAVGCGSVALCQQ   89 (352)
T ss_pred             ccceeccCCCCCCCCCHHHHHHHHHHHHhcCcCCC-----------CcHHHHHHHHHHHhCcCHH-HEEECCCHHHHHHH
Confidence            357899998777 4778999999887765433332           1245899999999998764 89999999999999


Q ss_pred             HHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccc
Q 017640          145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI  224 (368)
Q Consensus       145 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~  224 (368)
                      ++.++    +++||+|+++.|.|..    +...++..|++++.++.++++.+|++.+++++++++++|++++++||||.+
T Consensus        90 ~~~~~----~~~gd~Vli~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~  161 (352)
T PRK03321         90 LVQAT----AGPGDEVIFAWRSFEA----YPILVQVAGATPVQVPLTPDHTHDLDAMAAAITDRTRLIFVCNPNNPTGTV  161 (352)
T ss_pred             HHHHh----cCCCCEEEeCCCCHHH----HHHHHHHcCCEEEEccCCCCCCCCHHHHHHhhccCCCEEEEeCCCCCcCCC
Confidence            99887    8999999999996644    445567789999999998778889999999998899999999999999999


Q ss_pred             cCHHHHHHHHHh--cCCEEEEecCCcCCcc------ccc-CCCCCccEEEecCcCcCCCCc--ceEEEEcccccccCCCc
Q 017640          225 LPIEEIVHWSHD--VGAKVLVDACQSVPHM------VVD-VQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPF  293 (368)
Q Consensus       225 ~~l~~i~~l~~~--~g~~li~D~a~~~~~~------~~~-~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~~~  293 (368)
                      +|.++|.++|++  +++++|+|++|.....      .+. ....+..++++|+||.||.+|  +||+++++++++.+...
T Consensus       162 ~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~  241 (352)
T PRK03321        162 VTPAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYAVGHPEVIAALRKV  241 (352)
T ss_pred             cCHHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhhhcCCHHHHHHHHHh
Confidence            999999999987  5899999999862111      111 112245688889999999888  99999999888876643


Q ss_pred             ccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          294 LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       294 ~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      ..                       ..+.+..+..++..+++..... .+.+ ++..+..+.+.+.|.+.
T Consensus       242 ~~-----------------------~~~~s~~~q~~a~~~l~~~~~~-~~~~-~~~~~~r~~~~~~L~~~  286 (352)
T PRK03321        242 AV-----------------------PFSVNSLAQAAAIASLAAEDEL-LERV-DAVVAERDRVRAALRAA  286 (352)
T ss_pred             cC-----------------------CCCCCHHHHHHHHHHhcCHHHH-HHHH-HHHHHHHHHHHHHHHHC
Confidence            21                       1245556665555555432221 2222 23333445566666653

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=99.94  E-value=2.1e-25  Score=212.11  Aligned_cols=260  Identities=15%  Similarity=0.082  Sum_probs=182.4

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----CC--CCCCcEEEeCCH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NA--SDSGEIVFTKNA  138 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~--~~~~~v~~t~g~  138 (368)
                      .+++.|+.+... ++++.+.+++.+.+.....    ..+    .......++|+++++++    |.  +++++|++|+|+
T Consensus        30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~Y----~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs  101 (388)
T PRK07366         30 KELIDLSLGSSDLPAPAHALEAIAQSLHDPST----HGY----LLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGS  101 (388)
T ss_pred             CCeEEeCCCCCCCCCCHHHHHHHHHHHhCccc----CCC----CCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCc
Confidence            567899888877 5578888888876642100    001    11122336777777776    43  332269999999


Q ss_pred             HHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC--CCCCHHHHHHhcccCceEEEEcc
Q 017640          139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLVVIHH  216 (368)
Q Consensus       139 t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~l~~~~~~v~~~~  216 (368)
                      ++++.+++.++    +++||+|++.+|+|+..    ...++..|++++.++++++  +.+|++++++.+.++++++++++
T Consensus       102 ~~al~~~~~~l----~~~gd~Vlv~~P~y~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~  173 (388)
T PRK07366        102 QEGTAHLPLAV----LNPGDFALLLDPGYPSH----AGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLAQARLMVLSY  173 (388)
T ss_pred             HHHHHHHHHHh----CCCCCEEEEcCCCCcch----HHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhcccceEEEEeC
Confidence            99999999988    89999999999988874    4455667999999999743  56788999888877899999999


Q ss_pred             cccccccccC---HHHHHHHHHhcCCEEEEecCCcCCc------c-cc-cCCCC-CccEEEecCcCcCCCCc--ceEEEE
Q 017640          217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH------M-VV-DVQGL-DADFLVASSHKMCGPTG--IGFLFG  282 (368)
Q Consensus       217 ~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~------~-~~-~~~~~-~~d~~~~s~~K~~g~~G--~G~l~~  282 (368)
                      ++||||.+++   +++|+++|++||++||+|++|..-.      . .+ ++... ...++++|+||.||.+|  +||++.
T Consensus       174 p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~  253 (388)
T PRK07366        174 PHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAIG  253 (388)
T ss_pred             CCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcchhheehcC
Confidence            9999999999   5678889999999999999987221      1 11 12211 24578899999999888  999999


Q ss_pred             cccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHh
Q 017640          283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       283 ~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~  362 (368)
                      ++++++.+.......                    ..++.+.... ++..++....+ -+++++++.++..+++.+.|++
T Consensus       254 ~~~li~~l~~~~~~~--------------------~~~~~~~~~~-~a~~~l~~~~~-~l~~~~~~~~~~r~~l~~~L~~  311 (388)
T PRK07366        254 NAQLIQALRQVKAVV--------------------DFNQYRGILN-GAIAALTGPQA-TVQQTVQIFRQRRDAFINALHQ  311 (388)
T ss_pred             CHHHHHHHHHHHhhc--------------------ccCCCHHHHH-HHHHHHhCcHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            999988776443211                    1112222222 22233321111 2566777777778888888776


Q ss_pred             h
Q 017640          363 R  363 (368)
Q Consensus       363 ~  363 (368)
                      .
T Consensus       312 ~  312 (388)
T PRK07366        312 I  312 (388)
T ss_pred             C
Confidence            4

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.94  E-value=1e-24  Score=211.72  Aligned_cols=283  Identities=15%  Similarity=0.087  Sum_probs=204.2

Q ss_pred             EEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHH--
Q 017640           69 VYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV--  145 (368)
Q Consensus        69 i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~--  145 (368)
                      .+++.+... ..++.+.+++.+.-...+-.|+ .....+.+..+.+.++++.+++++|.+.. .+..++|+++.+..+  
T Consensus        71 ~~~g~G~~~~~~~p~i~~~~~~~~~~~~~tpY-q~e~~sqG~lel~~~~~~~la~l~G~~~~-~l~~~~GA~a~~~~l~~  148 (481)
T PRK04366         71 GFYPLGSCTMKYNPKINEKVARLPGFAELHPL-QPEETVQGALELMYELQEWLKEITGMDAV-TLQPAAGAHGELTGLLM  148 (481)
T ss_pred             ceecCcccCCCCCHHHHHHHHhCcchhcCCCC-CChhhhhHHHHHHHHHHHHHHHHhCCCce-EEEeCcHHHHHHHHHHH
Confidence            466667555 7788888888765222222232 22234566788999999999999999732 333344444433322  


Q ss_pred             HHHccCCCCCCCC----EEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEccccccc
Q 017640          146 AYSWGLSNLKSGD----EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNML  221 (368)
Q Consensus       146 ~~~~~~~~~~~gd----~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~t  221 (368)
                      ++.+   ..++||    +|++++++|+++...    ++..|++++.+++++++.+|+++|++++++++++|++++++ +|
T Consensus       149 ~r~~---~~~~Gd~~~~~Vlv~~~~hp~~~~~----~~~~G~~vv~v~~~~~~~~D~e~L~~~i~~~t~~V~v~~Pn-~t  220 (481)
T PRK04366        149 IRAY---HEARGDTKRTEVIVPDSAHGTNPAS----AAMAGFKVVEIPSNEDGLVDLEALKAAVGEDTAALMLTNPN-TL  220 (481)
T ss_pred             HHHH---hhccCcCCCCEEEEcCCccHhHHHH----HHHcCCEEEEeecCCCCCcCHHHHHhhcccCCeEEEEeCCC-Cc
Confidence            2222   245565    999999999886543    46679999999998889999999999999999999999987 99


Q ss_pred             ccc-cCHHHHHHHHHhcCCEEEEecCCcCCcc-cccCCCCCccEEEecCcCcCC------CCcceEEEEcccccccCCCc
Q 017640          222 ASI-LPIEEIVHWSHDVGAKVLVDACQSVPHM-VVDVQGLDADFLVASSHKMCG------PTGIGFLFGKSDLLSAMPPF  293 (368)
Q Consensus       222 G~~-~~l~~i~~l~~~~g~~li~D~a~~~~~~-~~~~~~~~~d~~~~s~~K~~g------~~G~G~l~~~~~li~~l~~~  293 (368)
                      |.+ .|+++|+++|+++|+++++|+++..+.. .++...+++|++++|+||+||      ++|+|++++++++.+.+.+.
T Consensus       221 G~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~~~~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~  300 (481)
T PRK04366        221 GLFERNILEIAEIVHEAGGLLYYDGANLNAILGKARPGDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVP  300 (481)
T ss_pred             cccchHHHHHHHHHHHcCCEEEEEecChhhhcccCCccccCCCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhhCCCC
Confidence            987 4799999999999999999999986533 235667799999999999653      45588999999999888766


Q ss_pred             ccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          294 LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       294 ~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      ..|.... ....... ....-+|+..+|.+...+.++...+..+...|++.+.++...+++++.+.|.++
T Consensus       301 ~v~~~g~-~~~l~~~-r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~  368 (481)
T PRK04366        301 VVEKDGD-RYRLDYD-RPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI  368 (481)
T ss_pred             eeeccCC-ceeeccc-ccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence            5542111 1111111 112235677777777666666666666666678888899999999999999876

>PRK08068 transaminase; Reviewed

Probab=99.94  E-value=4.8e-25  Score=209.72  Aligned_cols=260  Identities=15%  Similarity=0.138  Sum_probs=183.9

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----CC--CCCCcEEEeCCH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NA--SDSGEIVFTKNA  138 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~--~~~~~v~~t~g~  138 (368)
                      ++.+.|+.+.++ +.++.+.+++.+.+......    .+    .......++|+++++++    |.  +++++|++|+|+
T Consensus        32 ~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~~----~Y----~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~  103 (389)
T PRK08068         32 HDVINLGQGNPDQPTPEHIVEALQEAAENPANH----KY----SPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGG  103 (389)
T ss_pred             CCeEEecCCCCCCCCCHHHHHHHHHHHhCCCCC----CC----CCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCc
Confidence            567899988766 45677888887776531100    01    00122336777777776    53  332279999999


Q ss_pred             HHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC--CCCCCHHHHHHhcccCceEEEEcc
Q 017640          139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVVIHH  216 (368)
Q Consensus       139 t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~~~~~v~~~~  216 (368)
                      ++++..++.++    +++||.|++++|+|+..    ...++..|++++.+++++  ++.+|++++++.+.+++++|++++
T Consensus       104 ~~~l~~~~~~~----~~~gd~vlv~~P~y~~~----~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~  175 (389)
T PRK08068        104 KAGLVELPQCL----MNPGDTILVPDPGYPDY----LSGVALARAQFETMPLIAENNFLPDYTKIPEEVAEKAKLMYLNY  175 (389)
T ss_pred             HHHHHHHHHHh----CCCCCEEEEcCCCCcch----HHHHHhcCCEEEEeecccccCCCCCHHHHHHhccccceEEEEEC
Confidence            99999999988    89999999999988874    444566799999999974  367899999999988899999999


Q ss_pred             cccccccccC---HHHHHHHHHhcCCEEEEecCCcC----Cccccc---CC-CCCccEEEecCcCcCCCCc--ceEEEEc
Q 017640          217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQSV----PHMVVD---VQ-GLDADFLVASSHKMCGPTG--IGFLFGK  283 (368)
Q Consensus       217 ~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~----~~~~~~---~~-~~~~d~~~~s~~K~~g~~G--~G~l~~~  283 (368)
                      |+||||.+++   +++|.++|++|++++|+|++|..    +..+..   .. ..+..+++.|+||.||.+|  +||++.+
T Consensus       176 P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~  255 (389)
T PRK08068        176 PNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVGN  255 (389)
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCccceeEeEecC
Confidence            9999999999   56888899999999999999862    111111   11 1235688999999999888  9999999


Q ss_pred             ccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          284 SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       284 ~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +++++.+......                    +..++++..+.+ +..++..-. .-++.++++.++..+++.+.|.+.
T Consensus       256 ~~l~~~l~~~~~~--------------------~~~~~~~~~q~~-~~~~l~~~~-~~~~~~~~~~~~~r~~~~~~L~~~  313 (389)
T PRK08068        256 ESVIEAINLLQDH--------------------LFVSLFGAIQDA-AIEALLSDQ-SCVAELVARYESRRNAFISACREI  313 (389)
T ss_pred             HHHHHHHHHHHhh--------------------ccCCCChHHHHH-HHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHHC
Confidence            9988876543321                    111233333332 233332111 124666777778888888888765

>PRK12414 putative aminotransferase; Provisional

Probab=99.94  E-value=4.2e-25  Score=209.61  Aligned_cols=262  Identities=14%  Similarity=0.153  Sum_probs=189.0

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC--CCCcEEEeCCHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS--DSGEIVFTKNATEAI  142 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~--~~~~v~~t~g~t~a~  142 (368)
                      +++++|+.+... ++++.+.+++.+.+...    . ..|....+..++.+.+++.+++++|.+  ++++|++|+|+++++
T Consensus        29 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~----~-~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al  103 (384)
T PRK12414         29 HDALNLSQGAPNFAPDPALVEGVARAMRDG----H-NQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGL  103 (384)
T ss_pred             CCeEEcCCCCCCCCCCHHHHHHHHHHHHhC----C-CCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHH
Confidence            467899988877 55888888888766531    0 111111223556667777777778875  224799999999999


Q ss_pred             HHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC-CCCCCHHHHHHhcccCceEEEEccccccc
Q 017640          143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHHISNML  221 (368)
Q Consensus       143 ~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~n~t  221 (368)
                      ..++.++    +.+||+|++.+|+|...    ...++..|++++.+++++ ++.+|++.|++++++++++|++++++|||
T Consensus       104 ~~~~~~l----~~~gd~Vlv~~p~y~~~----~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~NPT  175 (384)
T PRK12414        104 YAAISAL----VHPGDEVIYFEPSFDSY----APIVRLQGATPVAIKLSPEDFRVNWDEVAAAITPRTRMIIVNTPHNPS  175 (384)
T ss_pred             HHHHHHh----cCCCCEEEEeCCCccch----HHHHHHcCCEEEEEecCccccccCHHHHHhhcCcccEEEEEcCCCCCC
Confidence            9999988    89999999999998763    344555699999999874 56789999999998889999999999999


Q ss_pred             ccccC---HHHHHHHHHhcCCEEEEecCCcCCcc------cc-cCCC-CCccEEEecCcCcCCCCc--ceEEEEcccccc
Q 017640          222 ASILP---IEEIVHWSHDVGAKVLVDACQSVPHM------VV-DVQG-LDADFLVASSHKMCGPTG--IGFLFGKSDLLS  288 (368)
Q Consensus       222 G~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~------~~-~~~~-~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~  288 (368)
                      |.+++   +++|+++|++||+++|+|++|..-..      ++ .... .+..+++.|+||.||.+|  +||+++++++++
T Consensus       176 G~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~~~~l~~  255 (384)
T PRK12414        176 ATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAPAELMD  255 (384)
T ss_pred             CcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccceEEEEecCHHHHH
Confidence            99987   77888899999999999999873211      11 1111 235689999999999888  899999999887


Q ss_pred             cCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          289 AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       289 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      .+......                     .....+.....++...++.-.  ....+++..++..+.+.+.|.+.
T Consensus       256 ~l~~~~~~---------------------~~~~~s~~~q~a~~~~l~~~~--~~~~~~~~~~~~r~~l~~~L~~~  307 (384)
T PRK12414        256 EIRKVHQF---------------------MVFSADTPMQHAFAEALAEPA--SYLGLGAFYQRKRDLLARELAGS  307 (384)
T ss_pred             HHHHHHhh---------------------eecCCCcHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHHHHHHhC
Confidence            76543210                     011334444544544443111  12345666677777788887764

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.94  E-value=4.7e-25  Score=206.83  Aligned_cols=255  Identities=16%  Similarity=0.141  Sum_probs=179.0

Q ss_pred             eEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----CCC--CCCcEEEeCCHHH
Q 017640           68 LVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS--DSGEIVFTKNATE  140 (368)
Q Consensus        68 ~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~--~~~~v~~t~g~t~  140 (368)
                      ++.|+.+... +.++.+.+++.+.......++.          .....++|+++++++    |.+  ++++|++|+|+++
T Consensus         2 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~Y~~----------~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~   71 (350)
T TIGR03537         2 LFDFGTGDPKEPTPPFIRKALIDAVPEVSQYPS----------ALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKE   71 (350)
T ss_pred             eEeccCCCCCCCCCHHHHHHHHHHHhccCCCCC----------CCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHH
Confidence            3456666555 4477888888876543222221          111225666666665    643  3238999999999


Q ss_pred             HHHHHHHHccCCCCCCC---CEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC--CCCCCHHHHHHhcccCceEEEEc
Q 017640          141 AINLVAYSWGLSNLKSG---DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVVIH  215 (368)
Q Consensus       141 a~~~~~~~~~~~~~~~g---d~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~~~~~v~~~  215 (368)
                      ++..++.++    +++|   |+|++++|+|+..    ...++..|++++.+++++  ++.+|++++++++.+++++++++
T Consensus        72 ai~~~~~~~----~~~g~~~d~Vl~~~p~y~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~  143 (350)
T TIGR03537        72 AIFHFPLVF----IDPEEDRRRVIFGTPGYPVY----ERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILEETKIVWIN  143 (350)
T ss_pred             HHHHHHHHH----cCCCCCCceEEEcCCCCcch----HHHHHhcCCEEEEcccCcccCCccCHHHHHHhhhhccEEEEEe
Confidence            999999988    6766   6999999988874    444566799999999863  35689999999998899999999


Q ss_pred             ccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCc---ccccCC--CCCccEEEecCcCcCCCCc--ceEEEEccc
Q 017640          216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH---MVVDVQ--GLDADFLVASSHKMCGPTG--IGFLFGKSD  285 (368)
Q Consensus       216 ~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~---~~~~~~--~~~~d~~~~s~~K~~g~~G--~G~l~~~~~  285 (368)
                      +++||||.++|   +++|.++|++||+++|+|++|+...   .+.+..  ..+..+++.|+||.+|.+|  +||++.+++
T Consensus       144 ~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~GlRiG~~~~~~~  223 (350)
T TIGR03537       144 YPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALEVGIENVLAFHSLSKRSGMTGYRSGFVAGDEK  223 (350)
T ss_pred             CCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhhcCcCCEEEEeecccccCCccccceeeecCHH
Confidence            99999999999   8899999999999999999987321   111111  1235688889999999888  999999888


Q ss_pred             ccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          286 LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       286 li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +++.++.....                    +.. +.+.....++..++..  ....+.++++.++..+.+.+.|.+.
T Consensus       224 ~~~~~~~~~~~--------------------~~~-~~~~~~q~~~~~~l~~--~~~~~~~r~~l~~~~~~~~~~l~~~  278 (350)
T TIGR03537       224 LISFLRKLRAN--------------------FGV-ASPDFVQAAAKAAWSD--DNHVLERRKIFKRKRDLFIEFFNKV  278 (350)
T ss_pred             HHHHHHHHHHh--------------------hcc-CCCHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            88776644321                    111 2222333333344431  1124566677777777787777764

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK06348 aspartate aminotransferase; Provisional

Probab=99.94  E-value=5.6e-25  Score=208.83  Aligned_cols=259  Identities=16%  Similarity=0.148  Sum_probs=182.9

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHH-hhccCCCCcchhhHHHHHHHHHHHHHHHHHc----C--CCCCCcEEEeCC
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEA-YNSNVHRGIHFLSAKATDEYELARKKVAAFI----N--ASDSGEIVFTKN  137 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~--~~~~~~v~~t~g  137 (368)
                      ++.+.|+.+.+. ++++.+.++..+.... ...++.          .....++|+++++++    |  .++ ++|++|+|
T Consensus        29 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~----------~~G~~~lr~~ia~~~~~~~~~~~~~-~~i~it~G   97 (384)
T PRK06348         29 PDIIDLSLGDPDLITDESIINAAFEDAKKGHTRYTD----------SGGDVELIEEIIKYYSKNYDLSFKR-NEIMATVG   97 (384)
T ss_pred             CCcEEcCCCCCCCCCCHHHHHHHHHHHhcCCCCCCC----------CCCcHHHHHHHHHHHHHHhCCCCCh-hhEEEcCC
Confidence            356778877766 4456666655444322 111111          112235677777666    3  334 59999999


Q ss_pred             HHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC--CCCCCCHHHHHHhcccCceEEEEc
Q 017640          138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDESPDLDKLKEMLSRKTKLVVIH  215 (368)
Q Consensus       138 ~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~l~~~~~~v~~~  215 (368)
                      +++++..++.++    +++||+|++.+|.|+..    ...++..|++++.++..  .++.+|+++|++.+.+++++|+++
T Consensus        98 ~~~al~~~~~~~----~~~gd~vlv~~p~y~~~----~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~  169 (384)
T PRK06348         98 ACHGMYLALQSI----LDPGDEVIIHEPYFTPY----KDQIEMVGGKPIILETYEEDGFQINVKKLEALITSKTKAIILN  169 (384)
T ss_pred             hHHHHHHHHHHh----cCCCCEEEEeCCCCcch----HHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCcCccEEEEe
Confidence            999999999998    89999999999988874    44455669999999874  346689999999998889999999


Q ss_pred             ccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc-----cc-cCCC-CCccEEEecCcCcCCCCc--ceEEEEc
Q 017640          216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM-----VV-DVQG-LDADFLVASSHKMCGPTG--IGFLFGK  283 (368)
Q Consensus       216 ~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~-----~~-~~~~-~~~d~~~~s~~K~~g~~G--~G~l~~~  283 (368)
                      +++||||.+++   +++|.++|++||++||+|++|..-..     ++ .+.. .+..+++.|+||.+|.+|  +||++++
T Consensus       170 ~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v~~  249 (384)
T PRK06348        170 SPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVIAP  249 (384)
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEEEecchhccCCccccceeeecC
Confidence            99999999999   67888889999999999999883211     11 1221 246789999999999888  9999999


Q ss_pred             ccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          284 SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       284 ~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +++++.+.......                     ..+.+.....++..+++..++. .+.+++..++..+++.+.|.++
T Consensus       250 ~~~~~~~~~~~~~~---------------------~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~r~~~~~~~L~~~  307 (384)
T PRK06348        250 DYIIETAKIINEGI---------------------CFSAPTISQRAAIYALKHRDTI-VPLIKEEFQKRLEYAYKRIESI  307 (384)
T ss_pred             HHHHHHHHHHHHhc---------------------cCCCCHHHHHHHHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHhcC
Confidence            98877665333110                     1134555555565565533222 4566667777778888888776


Q ss_pred             cC
Q 017640          364 HN  365 (368)
Q Consensus       364 ~g  365 (368)
                      ++
T Consensus       308 ~~  309 (384)
T PRK06348        308 PN  309 (384)
T ss_pred             CC
Confidence            54

>PRK07179 hypothetical protein; Provisional

Probab=99.94  E-value=8.4e-25  Score=209.21  Aligned_cols=261  Identities=17%  Similarity=0.161  Sum_probs=196.8

Q ss_pred             CCCeEEeccCCCC--CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHH
Q 017640           65 SKKLVYLDNAATS--QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI  142 (368)
Q Consensus        65 ~~~~i~l~~~~~~--~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~  142 (368)
                      +..+++++...+-  ...|.+++++.+++..+..+++.+.....  ..+...++++.+++++|.+   .+++++|+++|+
T Consensus        53 g~~~~~~~~~~YL~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~--~~~~~~~le~~la~~~g~~---~~~~~~sG~~An  127 (407)
T PRK07179         53 GPDAIILQSNDYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLH--DDSPKPQFEKKLAAFTGFE---SCLLCQSGWAAN  127 (407)
T ss_pred             CCcEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCccccccC--CchHHHHHHHHHHHHhCCC---cEEEECCHHHHH
Confidence            3556666665443  45789999999999887555532211111  1235667889999999985   568899999999


Q ss_pred             HHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc-CceEEEEccccccc
Q 017640          143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNML  221 (368)
Q Consensus       143 ~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~t  221 (368)
                      ..++.++    ..+||.|++...+|.+....    ++..|++++.++..     |+++|++++++ ++++|++++++|||
T Consensus       128 ~~~l~~l----~~~g~~v~~~~~~h~s~~~~----~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~lV~v~~v~n~t  194 (407)
T PRK07179        128 VGLLQTI----ADPNTPVYIDFFAHMSLWEG----VRAAGAQAHPFRHN-----DVDHLRRQIERHGPGIIVVDSVYSTT  194 (407)
T ss_pred             HHHHHHh----CCCCCEEEEECCcCHHHHHH----HHHCCCeEEEecCC-----CHHHHHHHHHhcCCeEEEECCCCCCC
Confidence            9999998    77899999999999886543    34458777766543     89999999976 57899999999999


Q ss_pred             ccccCHHHHHHHHHhcCCEEEEecCCcCCccc---------ccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCC
Q 017640          222 ASILPIEEIVHWSHDVGAKVLVDACQSVPHMV---------VDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPP  292 (368)
Q Consensus       222 G~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~---------~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~  292 (368)
                      |.+.|+++|.++|++||+++|+|++|+.|...         +++. .++|++++|+||.+|+. +|++++++++++.+..
T Consensus       195 G~i~pl~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~-~~vdi~~~S~sK~~g~~-~G~l~~~~~~~~~~~~  272 (407)
T PRK07179        195 GTIAPLADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLT-SRVHFITASLAKAFAGR-AGIITCPRELAEYVPF  272 (407)
T ss_pred             CccccHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCC-CCCCEEEeechHhhhcc-CeEEEeCHHHHHHHHH
Confidence            99999999999999999999999999976531         1111 24699999999988865 7999999887665542


Q ss_pred             cccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          293 FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       293 ~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      ....                  .. ..+|.+...++++.++++.+..  .+..+++..++.+++.+.|.++ |++
T Consensus       273 ~~~~------------------~~-~~~t~~~~~~aa~~aal~~~~~--~~~~~~~l~~~~~~l~~~L~~~-g~~  325 (407)
T PRK07179        273 VSYP------------------AI-FSSTLLPHEIAGLEATLEVIES--ADDRRARLHANARFLREGLSEL-GYN  325 (407)
T ss_pred             hCcC------------------ee-eCCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc-CCC
Confidence            2100                  01 1347777777778888887755  3567889999999999999876 554

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=99.94  E-value=3.7e-25  Score=210.79  Aligned_cols=258  Identities=17%  Similarity=0.243  Sum_probs=184.7

Q ss_pred             CCCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----CC----CCCCcEEEe
Q 017640           65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NA----SDSGEIVFT  135 (368)
Q Consensus        65 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~----~~~~~v~~t  135 (368)
                      +.+.+.|+.+.+. .+|+.+.+++.+.+.....++..          ....++|+++++++    |.    +++++|++|
T Consensus        27 ~~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~~Y~~~----------~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it   96 (393)
T TIGR03538        27 SKPPIALSIGEPKHPTPAFVLEALRENLHGLSTYPTT----------KGLPELRQAIARWLERRFDLPTGVDPERHVLPV   96 (393)
T ss_pred             CCCeEEecCCCCCCCCCHHHHHHHHHHhhccCCCCCC----------CCCHHHHHHHHHHHHHhhCCcccCCCCceEEEC
Confidence            3678899998877 57888899988876543222221          11236777777776    43    333479999


Q ss_pred             CCHHHHHHHHHHHccCCCCCCCCE--EEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC--CCCCHHHHHHhcccCceE
Q 017640          136 KNATEAINLVAYSWGLSNLKSGDE--VILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKL  211 (368)
Q Consensus       136 ~g~t~a~~~~~~~~~~~~~~~gd~--vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~l~~~~~~  211 (368)
                      +|+++++..++.++    +++||.  |++++|.|+.    +...++..|++++.++++++  +.+|++++++++.+++++
T Consensus        97 ~Ga~~al~~~~~~l----~~~gd~~~vlv~~P~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~  168 (393)
T TIGR03538        97 NGTREALFAFAQAV----INPGQAPLVVMPNPFYQI----YEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWRRCQL  168 (393)
T ss_pred             CCcHHHHHHHHHHH----cCCCCcceEEecCCCCcc----hHHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhhcceE
Confidence            99999999999988    889986  9999998876    44456677999999998643  578999999988888999


Q ss_pred             EEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc-----ccc-------C--CCCCccEEEecCcCcCCC
Q 017640          212 VVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM-----VVD-------V--QGLDADFLVASSHKMCGP  274 (368)
Q Consensus       212 v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~-----~~~-------~--~~~~~d~~~~s~~K~~g~  274 (368)
                      |++++++||||.+++   +++|+++|++||++||+|++|..-..     +..       .  ...+..+++.|+||.|+.
T Consensus       169 i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~  248 (393)
T TIGR03538       169 LFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNL  248 (393)
T ss_pred             EEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCC
Confidence            999999999999999   78889999999999999999873211     101       1  112346899999999888


Q ss_pred             Cc--ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Q 017640          275 TG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKW  352 (368)
Q Consensus       275 ~G--~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l  352 (368)
                      +|  +||++.++++++.+.....                     ....+.+...+.++..++..  ..-++..+++.++.
T Consensus       249 ~GlRvG~~i~~~~l~~~~~~~~~---------------------~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~  305 (393)
T TIGR03538       249 PGLRSGFVAGDAEILKAFLRYRT---------------------YHGCAMPIPTQLASIAAWND--EQHVRENRALYREK  305 (393)
T ss_pred             cccceEEEecCHHHHHHHHHHHH---------------------hhccCcCHHHHHHHHHHhcC--hHHHHHHHHHHHHH
Confidence            88  9999999988876653321                     00113344444444444421  11255666667777


Q ss_pred             HHHHHHHHHhh
Q 017640          353 IICSIIVIQER  363 (368)
Q Consensus       353 ~~~l~~~l~~~  363 (368)
                      .+.+.+.|.+.
T Consensus       306 ~~~~~~~L~~~  316 (393)
T TIGR03538       306 FAAVLEILGQV  316 (393)
T ss_pred             HHHHHHHHHhh
Confidence            77777777654

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.94  E-value=9.6e-25  Score=206.62  Aligned_cols=261  Identities=19%  Similarity=0.152  Sum_probs=194.8

Q ss_pred             CcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCC--CCCC
Q 017640           79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLS--NLKS  156 (368)
Q Consensus        79 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~--~~~~  156 (368)
                      +.+.+.+++..+......++.  .+   ....+..+++++.+++++|++++ ++++++|+++++..++.++...  .-++
T Consensus        32 ~~~~~~~a~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~la~~~g~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~  105 (373)
T TIGR03812        32 PHPIAVKAYDMFIETNLGDPG--LF---PGTKKIEEEVVGSLGNLLHLPDA-YGYIVSGGTEANIQAVRAAKNLAREEKR  105 (373)
T ss_pred             chHHHHHHHHHHhhcCCCCcc--cC---ccHHHHHHHHHHHHHHHhCCCCC-CeEEeccHHHHHHHHHHHHHHHHhccCC
Confidence            444457777666554333332  11   23456678899999999999765 7888999999998887665110  0146


Q ss_pred             CCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHh
Q 017640          157 GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHD  236 (368)
Q Consensus       157 gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~  236 (368)
                      ||+|++++++|++    +...++..|++++.++.++++.+|++++++++++++..+++.+++|+||.+.|+++|.++|++
T Consensus       106 g~~vl~~~~~h~~----~~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~l~~~~~~vv~~~~~~~tG~~~~~~~i~~l~~~  181 (373)
T TIGR03812       106 TPNIIVPESAHFS----FEKAAEMLGLELRYAPLDEDYTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDDIEELSKIALE  181 (373)
T ss_pred             CcEEEECCcchHH----HHHHHHHcCCeEEEEeeCCCCCcCHHHHHHHHhhCcEEEEEECCCCCCCccCCHHHHHHHHHH
Confidence            7899999998877    555677789999999998889999999999998877544444478999999999999999999


Q ss_pred             cCCEEEEecCCcCCcc----------cccCCCCCccEEEecCcCc-CCCCcce-EEEEcccccccCCCcccCCcceeecc
Q 017640          237 VGAKVLVDACQSVPHM----------VVDVQGLDADFLVASSHKM-CGPTGIG-FLFGKSDLLSAMPPFLGGGEMISDVF  304 (368)
Q Consensus       237 ~g~~li~D~a~~~~~~----------~~~~~~~~~d~~~~s~~K~-~g~~G~G-~l~~~~~li~~l~~~~~g~~~~~~~~  304 (368)
                      +|+++++|++|+.+..          .+++...+.|++++|.||+ ++|.++| +++.++++++.++... .+..     
T Consensus       182 ~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~~~l~~~~-~~~~-----  255 (373)
T TIGR03812       182 NGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYLKYLSVDA-PYLT-----  255 (373)
T ss_pred             cCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCHHHHhhhcccC-cccC-----
Confidence            9999999999985543          2333334789999999995 4555555 4456777776653110 0000     


Q ss_pred             cCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          305 LDHSTFADPPSRF-EAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       305 ~~~~~~~~~~~~~-~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                              ...++ ..||++...++++..+++++.+.|++.+.++..++++++++.|+++
T Consensus       256 --------~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~  307 (373)
T TIGR03812       256 --------VKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKI  307 (373)
T ss_pred             --------CCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence                    00112 2578999999999999999888899999999999999999999886

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.94  E-value=7.8e-26  Score=211.80  Aligned_cols=219  Identities=17%  Similarity=0.111  Sum_probs=178.6

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHcCCC-CCCcEEEeCCHHHHHHHHHHHccCCCCC--------C--CCEEEEcCCCCccc
Q 017640          102 IHFLSAKATDEYELARKKVAAFINAS-DSGEIVFTKNATEAINLVAYSWGLSNLK--------S--GDEVILTVAEHHSA  170 (368)
Q Consensus       102 ~~~~~~~~~~~~~~~r~~la~~~~~~-~~~~v~~t~g~t~a~~~~~~~~~~~~~~--------~--gd~vl~~~~~~~s~  170 (368)
                      .+..+....+..+++++++++++|.+ .+.+++||+|+|+++..++.++......        +  +++|++++++|++.
T Consensus        29 ~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~  108 (345)
T cd06450          29 TWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSV  108 (345)
T ss_pred             ccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHH
Confidence            34445566788888999999999997 4448999999999999999886321111        2  34788889988884


Q ss_pred             HHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc------CceEEEEcccccccccccCHHHHHHHHHhcCCEEEEe
Q 017640          171 IVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR------KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVD  244 (368)
Q Consensus       171 ~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D  244 (368)
                      .    ..++..|.+++.++.++++.+|+++|++++.+      ++++|++++++|+||.+.|+++|.++|++||+++++|
T Consensus       109 ~----~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD  184 (345)
T cd06450         109 E----KAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVD  184 (345)
T ss_pred             H----HHHHHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEe
Confidence            4    34455589999999988889999999999987      7889999999999999999999999999999999999


Q ss_pred             cCCcCCcccccCCC------CCccEEEecCcCc-CCCCcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCC
Q 017640          245 ACQSVPHMVVDVQG------LDADFLVASSHKM-CGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRF  317 (368)
Q Consensus       245 ~a~~~~~~~~~~~~------~~~d~~~~s~~K~-~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~  317 (368)
                      ++|+.+..+.+...      .++|++++|+||+ ++|.|+|+++++                                  
T Consensus       185 ~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~----------------------------------  230 (345)
T cd06450         185 AAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR----------------------------------  230 (345)
T ss_pred             chhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHHHHHH----------------------------------
Confidence            99998776443211      2689999999995 467789988766                                  


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          318 EAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       318 ~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                               .+++..+++++...|++.+.++..++++++.+.|.++++++
T Consensus       231 ---------~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~  271 (345)
T cd06450         231 ---------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFE  271 (345)
T ss_pred             ---------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence                     35567778888888899999999999999999999887753

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.94  E-value=5.1e-25  Score=216.37  Aligned_cols=200  Identities=18%  Similarity=0.261  Sum_probs=157.3

Q ss_pred             CCCeEEeccCCCC----CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc------CCCCCCcEEE
Q 017640           65 SKKLVYLDNAATS----QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI------NASDSGEIVF  134 (368)
Q Consensus        65 ~~~~i~l~~~~~~----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~------~~~~~~~v~~  134 (368)
                      |.+++.|+.+...    +.|+.+.+++.+.+.....++.          .....++|+++++++      +.++ ++|++
T Consensus       145 g~~~i~l~~G~p~~~~~~~p~~~~~~~~~~~~~~~~Y~~----------~~G~~~lReaia~~~~~~~~~~~~~-~~I~i  213 (517)
T PRK13355        145 GTHILKLNIGNPAPFGFRTPDEVVYDMAQQLTDTEGYSD----------SKGLFSARKAIMQYAQLKGLPNVDV-DDIYT  213 (517)
T ss_pred             CCCeEEecCcCCCcCCCCCCHHHHHHHHHHhhcCCCCCC----------CcChHHHHHHHHHHHHhcCCCCCCh-hHEEE
Confidence            4678999997763    4588888988877654322221          233447888888888      4554 49999


Q ss_pred             eCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC--CCCCCHHHHHHhcccCceEE
Q 017640          135 TKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLV  212 (368)
Q Consensus       135 t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~~~~~v  212 (368)
                      |+|+++++.+++.++    +++||+|++++|.|+.    +...++..|++++.+++++  ++.+|++++++++++++++|
T Consensus       214 t~G~~eal~~~~~~l----~~~Gd~Vli~~P~y~~----y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~k~i  285 (517)
T PRK13355        214 GNGVSELINLSMSAL----LDDGDEVLIPSPDYPL----WTACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKITSRTKAI  285 (517)
T ss_pred             eCcHHHHHHHHHHHh----CCCCCEEEEcCCCCcC----HHHHHHHCCCEEEEeecCcccCCCCCHHHHHHhcCcCceEE
Confidence            999999999999988    8999999999998887    4455667799999999874  37899999999999999999


Q ss_pred             EEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCc------ccc-cCCCCCccEEEecCcCcCCCCc--ceEE
Q 017640          213 VIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH------MVV-DVQGLDADFLVASSHKMCGPTG--IGFL  280 (368)
Q Consensus       213 ~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~------~~~-~~~~~~~d~~~~s~~K~~g~~G--~G~l  280 (368)
                      ++++|+||||.+++   +++|+++|++||++||+|++|.--.      .++ .+......+++.|+||.|+.+|  +||+
T Consensus       286 ~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~  365 (517)
T PRK13355        286 VIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHMIAGYRIGWM  365 (517)
T ss_pred             EEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhhccCcccceEEE
Confidence            99999999999999   7889999999999999999987211      111 1111112355689999999888  9999


Q ss_pred             EEc
Q 017640          281 FGK  283 (368)
Q Consensus       281 ~~~  283 (368)
                      +++
T Consensus       366 i~~  368 (517)
T PRK13355        366 ILS  368 (517)
T ss_pred             Eee
Confidence            864

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.94  E-value=1.3e-25  Score=213.79  Aligned_cols=263  Identities=19%  Similarity=0.191  Sum_probs=189.4

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----CCC-CCCcEEEeCCHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS-DSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~-~~~~v~~t~g~t  139 (368)
                      ++++.|+.+... ++++.+.+++.+.+.....     .+..    .....++|+++++++    |.. .+++|++|+|++
T Consensus        33 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~Y~~----~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~  103 (391)
T PRK08361         33 ENVISLGIGEPDFDTPKNIKEAAKRALDEGWT-----HYTP----NAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAY  103 (391)
T ss_pred             cCeEEcCCCCCCCCCCHHHHHHHHHHHhcCCC-----CCCC----CCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChH
Confidence            457888888877 4577888888776653100     0100    122336777777776    432 234999999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC--CCCCHHHHHHhcccCceEEEEccc
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLVVIHHI  217 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~l~~~~~~v~~~~~  217 (368)
                      +++.+++.++    +++||.|++.+|+|.+..    ..++..|++++.++++++  +.+|++++++.+++++++++++++
T Consensus       104 ~al~~~~~~l----~~~g~~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~i~~p  175 (391)
T PRK08361        104 EATYLAFESL----LEEGDEVIIPDPAFVCYV----EDAKIAEAKPIRIPLREENEFQPDPDELLELITKRTRMIVINYP  175 (391)
T ss_pred             HHHHHHHHHh----cCCCCEEEEcCCCCcccH----HHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccccEEEEEeCC
Confidence            9999999988    889999999999988843    445567999999998753  578999999999989999999999


Q ss_pred             ccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc----cccCC--CCCccEEEecCcCcCCCCc--ceEEEEcccc
Q 017640          218 SNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VVDVQ--GLDADFLVASSHKMCGPTG--IGFLFGKSDL  286 (368)
Q Consensus       218 ~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~----~~~~~--~~~~d~~~~s~~K~~g~~G--~G~l~~~~~l  286 (368)
                      +||||.++|   +++|.++|+++++++|+|++|+....    ...+.  ..+.++++.|+||.||.+|  +||+++++++
T Consensus       176 ~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlRiG~~~~~~~~  255 (391)
T PRK08361        176 NNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTGWRLGFVIAPEQV  255 (391)
T ss_pred             CCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCcHhhhhhhccCHHH
Confidence            999999999   88999999999999999999873221    11111  1246789999999999888  9999999988


Q ss_pred             cccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHhhcC
Q 017640          287 LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST-IGMQKIHAYEVKWIICSIIVIQERHN  365 (368)
Q Consensus       287 i~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~-~g~~~i~~~~~~l~~~l~~~l~~~~g  365 (368)
                      ++.+.....                     +..++.+.....++..+++.-.. ..++.++++.++..+.+.+.|.+.+|
T Consensus       256 ~~~~~~~~~---------------------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~  314 (391)
T PRK08361        256 IKDMIKLHA---------------------YIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPH  314 (391)
T ss_pred             HHHHHHHHh---------------------hhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            876543211                     01113333334444444432111 12567788888888888999887655


Q ss_pred             C
Q 017640          366 T  366 (368)
Q Consensus       366 ~  366 (368)
                      +
T Consensus       315 ~  315 (391)
T PRK08361        315 I  315 (391)
T ss_pred             C
Confidence            4

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.94  E-value=3.1e-25  Score=211.46  Aligned_cols=262  Identities=16%  Similarity=0.173  Sum_probs=190.8

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----C--CCCCCcEEEeCCH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----N--ASDSGEIVFTKNA  138 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~--~~~~~~v~~t~g~  138 (368)
                      ++.+.|..+... ++++.+.+++.+.+.....     .+.    .......+|+.+++++    |  ..+ ++|++|+|+
T Consensus        31 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~Y~----~~~g~~~lr~~ia~~~~~~~~~~~~~-~~i~~~~g~  100 (393)
T PRK05764         31 RDVISLGAGEPDFDTPEHIKEAAIEALDDGKT-----KYT----PAAGIPELREAIAAKLKRDNGLDYDP-SQVIVTTGA  100 (393)
T ss_pred             CCEEEeCCCCCCCCCCHHHHHHHHHHHhcCCC-----CcC----CCCChHHHHHHHHHHHHHHhCCCCCH-HHEEEeCCc
Confidence            567888888877 4577888888777653110     011    1122346777777776    3  333 489999999


Q ss_pred             HHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC--CCCCCHHHHHHhcccCceEEEEcc
Q 017640          139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVVIHH  216 (368)
Q Consensus       139 t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~~~~~v~~~~  216 (368)
                      ++++..++.++    +++||.|++++|+|..    +...++..|++++.++.++  ++.+|++.+++++++++++|++++
T Consensus       101 ~~a~~~~~~~~----~~~gd~vl~~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~  172 (393)
T PRK05764        101 KQALYNAFMAL----LDPGDEVIIPAPYWVS----YPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAITPKTKALILNS  172 (393)
T ss_pred             HHHHHHHHHHh----cCCCCEEEecCCCCcc----hHHHHHHcCCEEEEEecCcccCCcCCHHHHHHhhCccceEEEEEC
Confidence            99999999988    8899999999998887    4445566799999999874  367899999999988899999999


Q ss_pred             cccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc------cc-c--CCCCCccEEEecCcCcCCCCc--ceEEEE
Q 017640          217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM------VV-D--VQGLDADFLVASSHKMCGPTG--IGFLFG  282 (368)
Q Consensus       217 ~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~------~~-~--~~~~~~d~~~~s~~K~~g~~G--~G~l~~  282 (368)
                      ++||||.++|   +++|.++|++||+++++|++|+....      ++ .  .+..+.+++++|++|.+|.+|  +||++.
T Consensus       173 p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~i~~  252 (393)
T PRK05764        173 PSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRLGYAAG  252 (393)
T ss_pred             CCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCccceeEEEec
Confidence            9999999998   77899999999999999999873221      11 1  122357899999999999888  899999


Q ss_pred             cccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHh
Q 017640          283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       283 ~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~  362 (368)
                      ++++++.+......                     .....+.....++...++.. ...++.++++..+..+++.+.|++
T Consensus       253 ~~~~~~~~~~~~~~---------------------~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~  310 (393)
T PRK05764        253 PKELIKAMSKLQSH---------------------STSNPTSIAQYAAVAALNGP-QDEVEEMRQAFEERRDLMVDGLNE  310 (393)
T ss_pred             CHHHHHHHHHHHhh---------------------cccCCChHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99888776543311                     01133444444454555411 122456677777888888888887


Q ss_pred             hcCCC
Q 017640          363 RHNTT  367 (368)
Q Consensus       363 ~~g~t  367 (368)
                      ++|++
T Consensus       311 ~~g~~  315 (393)
T PRK05764        311 IPGLE  315 (393)
T ss_pred             CCCCc
Confidence            75653

>PRK07337 aminotransferase; Validated

Probab=99.94  E-value=7.5e-25  Score=208.36  Aligned_cols=260  Identities=14%  Similarity=0.090  Sum_probs=184.3

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----CCC-CCCcEEEeCCHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS-DSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~-~~~~v~~t~g~t  139 (368)
                      +++++|+.+... ++++.+.+++.+.+...   .  ..+.    ......++|+++++++    |.. ++++|++|+|++
T Consensus        30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~---~--~~Y~----~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~  100 (388)
T PRK07337         30 RDIIHMGIGEPDFTAPEPVVEAAARALRRG---V--TQYT----SALGLAPLREAIAAWYARRFGLDVAPERIVVTAGAS  100 (388)
T ss_pred             CCEEEeCCcCCCCCCCHHHHHHHHHHHhcC---C--CCCC----CCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcH
Confidence            678999999877 46788888888776531   0  0111    0122346777777776    432 234899999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC--CCCCCHHHHHHhcccCceEEEEccc
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVVIHHI  217 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~~~~~v~~~~~  217 (368)
                      +|+.+++.++    +++||+|++++|+|++...    .++..|++++.++.++  ++.+|++++++.+.+++++|+++++
T Consensus       101 ~al~~~~~~l----~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p  172 (388)
T PRK07337        101 AALLLACLAL----VERGDEVLMPDPSYPCNRH----FVAAAEGRPVLVPSGPAERFQLTAADVEAAWGERTRGVLLASP  172 (388)
T ss_pred             HHHHHHHHHh----cCCCCEEEEeCCCchhhHH----HHHHcCCEEEEeecCCccCCcCCHHHHHhhcCccceEEEEECC
Confidence            9999999988    8999999999999988543    3455699999999874  3688999999999989999999999


Q ss_pred             ccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc---cccCCCCC-ccEEEecCcCcCCCCc--ceEEEEcccccc
Q 017640          218 SNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVDVQGLD-ADFLVASSHKMCGPTG--IGFLFGKSDLLS  288 (368)
Q Consensus       218 ~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~---~~~~~~~~-~d~~~~s~~K~~g~~G--~G~l~~~~~li~  288 (368)
                      +||||.+++   +++|+++|++||+++|+|++|..-..   +......+ ..+++.|+||.||.+|  +||+++++++++
T Consensus       173 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~~~~~~l~~  252 (388)
T PRK07337        173 SNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSALSLGDDVITINSFSKYFNMTGWRLGWLVVPEALVG  252 (388)
T ss_pred             CCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcChhhccCCEEEEEechhhcCCchhheeeeecCHHHHH
Confidence            999999998   67888899999999999999872111   11111122 3356789999999888  999999998887


Q ss_pred             cCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          289 AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       289 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      .+........                     .+.+..+..++..+++.-.....++.+++.++..+++.+.|+++
T Consensus       253 ~l~~~~~~~~---------------------~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~  306 (388)
T PRK07337        253 TFEKLAQNLF---------------------ICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALESL  306 (388)
T ss_pred             HHHHHHHHhc---------------------cCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            7664432111                     12344444444444431000113455666777777777777764

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=99.94  E-value=1.1e-24  Score=208.72  Aligned_cols=262  Identities=19%  Similarity=0.239  Sum_probs=186.4

Q ss_pred             CCCeEEeccCCCC-----CCcHHHHHHHHHHHHHh--hccCCCCcchhhHHHHHHHHHHHHHHHHHcCC----------C
Q 017640           65 SKKLVYLDNAATS-----QKPIAVLKALQNYYEAY--NSNVHRGIHFLSAKATDEYELARKKVAAFINA----------S  127 (368)
Q Consensus        65 ~~~~i~l~~~~~~-----~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~----------~  127 (368)
                      +++++.|..+.+.     .+++.+.+++.+.+...  ..++.          .....++|++++++++.          .
T Consensus        32 ~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~~~~~~Y~~----------~~G~~~Lr~aia~~~~~~~~~~~~~~~~  101 (412)
T PTZ00433         32 PKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQECNGYPP----------TVGSPEAREAVATYWRNSFVHKESLKST  101 (412)
T ss_pred             CCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCC----------CCCcHHHHHHHHHHHHhhccccccccCC
Confidence            4788999998875     36888888888776641  11111          12234788888888762          1


Q ss_pred             -CCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC--CCCCCHHHHHHh
Q 017640          128 -DSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEM  204 (368)
Q Consensus       128 -~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~  204 (368)
                       .+++|++|+|+++++.+++.++    +++||+|++++|+|+.    +...++..|++++.++.++  ++.+|+++|+++
T Consensus       102 ~~~~~i~it~G~~~al~~~~~~~----~~~gd~vlv~~P~y~~----~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~  173 (412)
T PTZ00433        102 IKKDNVVLCSGVSHAILMALTAL----CDEGDNILVPAPGFPH----YETVCKAYGIEMRFYNCRPEKDWEADLDEIRRL  173 (412)
T ss_pred             CChhhEEEeCChHHHHHHHHHHh----cCCCCEEEEccCCccc----HHHHHHHcCCEEEEEecCccccCcCCHHHHHHH
Confidence             2359999999999999999988    8899999999998887    4455677799999999864  468899999999


Q ss_pred             cccCceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc------cc-cCCCCCccEEEecCcCcCCC
Q 017640          205 LSRKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM------VV-DVQGLDADFLVASSHKMCGP  274 (368)
Q Consensus       205 l~~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~------~~-~~~~~~~d~~~~s~~K~~g~  274 (368)
                      +.+++++|++++++||||.+++   +++|.++|++||++||+|++|..-..      ++ .+......++++|+||.||.
T Consensus       174 ~~~~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~  253 (412)
T PTZ00433        174 VDDRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLVV  253 (412)
T ss_pred             hccCceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhcCC
Confidence            9888999999999999999998   67788999999999999999873211      11 12222245788999999998


Q ss_pred             Cc--ceEEEEc------ccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHH
Q 017640          275 TG--IGFLFGK------SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIH  346 (368)
Q Consensus       275 ~G--~G~l~~~------~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~  346 (368)
                      +|  +||+++.      +++++.+.....                      .....+.....++..+++.-.+.-++.++
T Consensus       254 pGlRlG~~i~~~p~~~~~~~~~~~~~~~~----------------------~~~~~~~~~q~a~~~~l~~~~~~~~~~~~  311 (412)
T PTZ00433        254 PGWRLGWLLLVDPHGNGGDFLDGMKRLGM----------------------LVCGPCSVVQAALGEALLNTPQEHLEQIV  311 (412)
T ss_pred             CCeeEEEEEEeCCcccHHHHHHHHHHHhh----------------------ccCCCChHHHHHHHHHHhcCcHHHHHHHH
Confidence            88  9999972      234444332111                      00123444444444444321111256667


Q ss_pred             HHHHHHHHHHHHHHHhhcCC
Q 017640          347 AYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       347 ~~~~~l~~~l~~~l~~~~g~  366 (368)
                      ++.++..+.+.+.|.+..|+
T Consensus       312 ~~~~~~r~~l~~~L~~~~~~  331 (412)
T PTZ00433        312 AKLEEGAMVLYNHIGECIGL  331 (412)
T ss_pred             HHHHHHHHHHHHHHhcCCCC
Confidence            77777788888888765443

>PLN02656 tyrosine transaminase

Probab=99.94  E-value=1.2e-24  Score=208.16  Aligned_cols=263  Identities=14%  Similarity=0.166  Sum_probs=189.7

Q ss_pred             CCCeEEeccCCCC-----CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCC----C-CCCcEEE
Q 017640           65 SKKLVYLDNAATS-----QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINA----S-DSGEIVF  134 (368)
Q Consensus        65 ~~~~i~l~~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~----~-~~~~v~~  134 (368)
                      +++++.|+.+.+.     ++|+.+.+++.+.+.......    +    .......++|++++++++.    . .+++|++
T Consensus        30 ~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----Y----~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~  101 (409)
T PLN02656         30 GKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKFNG----Y----APTVGLPQARRAIAEYLSRDLPYKLSLDDVFI  101 (409)
T ss_pred             CCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCCCC----C----CCCCCCHHHHHHHHHHHHHhcCCCCCcccEEE
Confidence            4789999999885     668899999988776411110    1    0112233677777877742    2 2249999


Q ss_pred             eCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC--CCCCCHHHHHHhcccCceEE
Q 017640          135 TKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLV  212 (368)
Q Consensus       135 t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~~~~~v  212 (368)
                      |+|+++++.+++.++    +++||+|++++|.|+..    ...++..|++++.+++++  ++.+|+++++++++++++++
T Consensus       102 t~G~~~al~~~~~~l----~~~gd~Vlv~~p~y~~~----~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v  173 (409)
T PLN02656        102 TSGCTQAIDVALSML----ARPGANILLPRPGFPIY----ELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQNTVAL  173 (409)
T ss_pred             eCChHHHHHHHHHHH----hCCCCeEEEeCCCCCcH----HHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhccCceEE
Confidence            999999999999988    79999999999998763    344455799999999853  46789999999998899999


Q ss_pred             EEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCc------ccc-cCCCCCccEEEecCcCcCCCCc--ceEE
Q 017640          213 VIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH------MVV-DVQGLDADFLVASSHKMCGPTG--IGFL  280 (368)
Q Consensus       213 ~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~------~~~-~~~~~~~d~~~~s~~K~~g~~G--~G~l  280 (368)
                      ++++|+||||.+++   +++|+++|++||++||+|++|..-.      .++ .+......+++.|+||.|+.+|  +||+
T Consensus       174 ~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRiG~~  253 (409)
T PLN02656        174 VIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGWF  253 (409)
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccCcceeEEEE
Confidence            99999999999987   7788999999999999999987321      111 1222346788999999999888  9999


Q ss_pred             EEc--------ccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Q 017640          281 FGK--------SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKW  352 (368)
Q Consensus       281 ~~~--------~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l  352 (368)
                      +++        +++++.+.....                     . .+.++...+.++..+++...+.-++..+++.++.
T Consensus       254 i~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~  311 (409)
T PLN02656        254 VTTDPSGSFRDPKIVERIKKYFD---------------------I-LGGPATFIQAAVPTILEQTDESFFKKTINILKQS  311 (409)
T ss_pred             EEeCcccccccHHHHHHHHHHHh---------------------h-hcCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            984        355555442211                     0 1134555666666666421111255666777777


Q ss_pred             HHHHHHHHHhhcC
Q 017640          353 IICSIIVIQERHN  365 (368)
Q Consensus       353 ~~~l~~~l~~~~g  365 (368)
                      .+++.+.|.++++
T Consensus       312 r~~~~~~L~~~~~  324 (409)
T PLN02656        312 SDICCDRIKEIPC  324 (409)
T ss_pred             HHHHHHHHhhCCC
Confidence            8888888877543

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.94  E-value=4.1e-25  Score=208.24  Aligned_cols=207  Identities=18%  Similarity=0.254  Sum_probs=166.0

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEE-eCCHHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVF-TKNATEAIN  143 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~-t~g~t~a~~  143 (368)
                      .++++|+.+.+. .+++.+.+++.+.......++..           ...++|+.+++++|++++ +|++ ++|+++++.
T Consensus        34 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-----------~~~~lr~~ia~~~~~~~~-~i~~~~~Ga~~~i~  101 (361)
T PRK00950         34 ESIIKLGSNENPLGPSPKAVEAIEKELSKIHRYPEP-----------DAPELREALSKYTGVPVE-NIIVGGDGMDEVID  101 (361)
T ss_pred             cceEEccCCCCCCCCCHHHHHHHHHHHHhhcCCCCC-----------CHHHHHHHHHHHhCCCHH-HEEEeCCCHHHHHH
Confidence            478999887654 56778888888777654333321           125899999999999765 8888 789999999


Q ss_pred             HHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEccccccccc
Q 017640          144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLAS  223 (368)
Q Consensus       144 ~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~  223 (368)
                      .++.++    +++||.|++++|.|+.    +...++..|++++.++.+.++.+|++++++.+.++++++++++++||||.
T Consensus       102 ~~~~~~----~~~gd~vlv~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~  173 (361)
T PRK00950        102 TLMRTF----IDPGDEVIIPTPTFSY----YEISAKAHGAKPVYAKREEDFSLDVDSVLNAITEKTKVIFLCTPNNPTGN  173 (361)
T ss_pred             HHHHHh----cCCCCEEEEcCCChHH----HHHHHHHcCCEEEEeecCCCCCcCHHHHHHHhccCCCEEEEeCCCCCCCC
Confidence            999887    7899999999996655    44556777999999997777789999999999888999999999999999


Q ss_pred             ccCHHHHHHHHHhcCCEEEEecCCcCCcc-cc-c-CCCCCccEEEecCcCcCCCCc--ceEEEEcccccccCCC
Q 017640          224 ILPIEEIVHWSHDVGAKVLVDACQSVPHM-VV-D-VQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPP  292 (368)
Q Consensus       224 ~~~l~~i~~l~~~~g~~li~D~a~~~~~~-~~-~-~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~~  292 (368)
                      ++|.+++.++|+++|+++|+|++|..... +. . ....+..++++|++|.+|.+|  +||+++++++++.++.
T Consensus       174 ~~~~~~l~~l~~~~~~~li~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~  247 (361)
T PRK00950        174 LIPEEDIRKILESTDALVFVDEAYVEFAEYDYTPLALEYDNLIIGRTFSKVFGLAGLRIGYGFVPEWLIDYYMR  247 (361)
T ss_pred             CcCHHHHHHHHHHCCcEEEEECchhhhCccchHHHHHhcCCEEEEEeehHhhcCchhhcchhcCCHHHHHHHHH
Confidence            99999999999999999999999963211 01 1 112245688899999999888  9999999988876653

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.94  E-value=1e-24  Score=204.56  Aligned_cols=245  Identities=20%  Similarity=0.241  Sum_probs=186.2

Q ss_pred             CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCC
Q 017640           78 QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSG  157 (368)
Q Consensus        78 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~g  157 (368)
                      +.++.+.++++++++.+..+.  +.+....+..+..+++++.++++++.+   +.++++++++++..++.++    +++|
T Consensus        15 ~~~~~v~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~la~~~~~~---~~iv~~sg~~a~~~~~~~~----~~~g   85 (349)
T cd06454          15 ANHPEVIEAAKEALDKYGVGA--GGSRLISGTSDLHEELEEELAEFHGKE---AALVFSSGYAANDGVLSTL----AGKG   85 (349)
T ss_pred             CCCHHHHHHHHHHHHHhCCCC--CCcCeecCCchHHHHHHHHHHHHhCCC---CEEEeccHHHHHHHHHHHh----cCCC
Confidence            447899999999998753221  111111233667778999999999985   3455566678888888877    7899


Q ss_pred             CEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc-----CceEEEEcccccccccccCHHHHHH
Q 017640          158 DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-----KTKLVVIHHISNMLASILPIEEIVH  232 (368)
Q Consensus       158 d~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~-----~~~~v~~~~~~n~tG~~~~l~~i~~  232 (368)
                      |.|++++++|++....    ++..|++++.++.     +|.+.+++++++     +++++++++++|+||...|+++|.+
T Consensus        86 d~Vl~~~~~~~~~~~~----~~~~g~~~~~~~~-----~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~  156 (349)
T cd06454          86 DLIISDSLNHASIIDG----IRLSGAKKRIFKH-----NDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAPLPELVD  156 (349)
T ss_pred             CEEEEehhhhHHHHHH----HHHcCCceEEecC-----CCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccCHHHHHH
Confidence            9999999988885433    4556999888763     377888888764     5688999999999999999999999


Q ss_pred             HHHhcCCEEEEecCCcCCccc--------ccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCcceeecc
Q 017640          233 WSHDVGAKVLVDACQSVPHMV--------VDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVF  304 (368)
Q Consensus       233 l~~~~g~~li~D~a~~~~~~~--------~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~  304 (368)
                      +|++||+++|+|++|+.|...        ++....+.|++++|+||.+|++| |+++.++++++.+.+...         
T Consensus       157 ~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-G~i~~~~~~~~~~~~~~~---------  226 (349)
T cd06454         157 LAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAVG-GYIAGSKELIDYLRSYAR---------  226 (349)
T ss_pred             HHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcccC-CEEECCHHHHHHHHHhch---------
Confidence            999999999999999876542        22234578999999999999876 888888887765543221         


Q ss_pred             cCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          305 LDHSTFADPPSRF-EAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       305 ~~~~~~~~~~~~~-~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                                 .+ ..++.+...++++..+++++..  .+.++++..++.+++.+.|.+.
T Consensus       227 -----------~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~l~~~  273 (349)
T cd06454         227 -----------GFIFSTSLPPAVAAAALAALEVLQG--GPERRERLQENVRYLRRGLKEL  273 (349)
T ss_pred             -----------hhhccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhc
Confidence                       11 1246777778888889988776  4677899999999999998765

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.94  E-value=1.6e-24  Score=204.63  Aligned_cols=254  Identities=18%  Similarity=0.215  Sum_probs=189.5

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL  144 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~  144 (368)
                      .+++.|..+... .+++.+.+++.+....+..++...           ..++|+.+++++|++++ +|++|+|+++++..
T Consensus        32 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~y~~~~-----------~~~lr~~ia~~~~~~~~-~i~~t~G~~~~l~~   99 (367)
T PRK02731         32 ADIIKLASNENPLGPSPKAIEAIRAAADELHRYPDGS-----------GFELKAALAEKFGVDPE-RIILGNGSDEILEL   99 (367)
T ss_pred             CceEEecCCCCCCCCCHHHHHHHHHHHHhhcCCCCCc-----------HHHHHHHHHHHhCcCHH-HEEEcCCHHHHHHH
Confidence            567888887544 457788999888876543333211           13799999999998764 99999999999999


Q ss_pred             HHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccc
Q 017640          145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI  224 (368)
Q Consensus       145 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~  224 (368)
                      ++.++    +++||.|++.+|+|..    +...++..|++++.++. .++.+|++.+++++++++++|++++++||||.+
T Consensus       100 ~~~~l----~~~gd~vl~~~p~y~~----~~~~~~~~g~~~~~~~~-~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~  170 (367)
T PRK02731        100 LARAY----LGPGDEVIYSEHGFAV----YPIAAQAVGAKPVEVPA-KDYGHDLDAMLAAVTPRTRLVFIANPNNPTGTY  170 (367)
T ss_pred             HHHHh----cCCCCEEEEecCCHHH----HHHHHHHcCCeEEEecc-cCCCCCHHHHHHHhCCCCcEEEEeCCCCCCCcC
Confidence            99888    7899999999997754    44445678999999998 457789999999998889999999999999999


Q ss_pred             cCHHHHHHHHHhc--CCEEEEecCCcCCcc------cccC-CCCCccEEEecCcCcCCCCc--ceEEEEcccccccCCCc
Q 017640          225 LPIEEIVHWSHDV--GAKVLVDACQSVPHM------VVDV-QGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPF  293 (368)
Q Consensus       225 ~~l~~i~~l~~~~--g~~li~D~a~~~~~~------~~~~-~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~~~  293 (368)
                      +|.++|.++++.+  |+++++|++|.....      .++. +.....++++|++|.||.+|  +||+++++++++.+...
T Consensus       171 ~~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~l~~~  250 (367)
T PRK02731        171 LPAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIAPPEIIDALNRV  250 (367)
T ss_pred             CCHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeCCHHHHHHHHHc
Confidence            9999999998874  899999999863221      1111 12235688889999998877  79999999888776543


Q ss_pred             ccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          294 LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       294 ~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      ...                    +   ..+..++.++..+++.  ....+.++++.+++.+++.+.|++. |+
T Consensus       251 ~~~--------------------~---~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~  297 (367)
T PRK02731        251 RQP--------------------F---NVNSLALAAAVAALDD--DAFVEKSRALNAEGMAWLTEFLAEL-GL  297 (367)
T ss_pred             cCC--------------------C---CCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHC-CC
Confidence            210                    1   1233444444444432  1125677788888888888888775 54

>PRK08912 hypothetical protein; Provisional

Probab=99.94  E-value=2e-24  Score=205.33  Aligned_cols=259  Identities=16%  Similarity=0.150  Sum_probs=182.2

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----CCC-CCC-cEEEeCCH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS-DSG-EIVFTKNA  138 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~-~~~-~v~~t~g~  138 (368)
                      .+.+.|..+.+. +.|+.+.+++.+.+...  .   ..+..    .....++|+++++++    |.+ .++ +|++|+|+
T Consensus        26 ~~~i~l~~g~p~~~~p~~~~~~~~~~~~~~--~---~~Y~~----~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~   96 (387)
T PRK08912         26 HGAINLGQGFPDDPGPEDVRRAAADALLDG--S---NQYPP----MMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGA   96 (387)
T ss_pred             CCeEEccCCCCCCCCCHHHHHHHHHHHhcC--C---CCCCC----CCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCc
Confidence            456788887665 44677777777665421  0   01111    112235666666654    543 233 89999999


Q ss_pred             HHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC-CCCCCHHHHHHhcccCceEEEEccc
Q 017640          139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHHI  217 (368)
Q Consensus       139 t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~  217 (368)
                      ++++..++.++    +++||+|++.+|+|+.    +...++..|++++.+++++ ++.+|++.+++.+.+++++++++++
T Consensus        97 ~~al~~~~~~~----~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p  168 (387)
T PRK08912         97 TEALAAALLAL----VEPGDEVVLFQPLYDA----YLPLIRRAGGVPRLVRLEPPHWRLPRAALAAAFSPRTKAVLLNNP  168 (387)
T ss_pred             HHHHHHHHHHh----cCCCCEEEEeCCCchh----hHHHHHHcCCEEEEEecCcccCcCCHHHHHHHhCccceEEEEeCC
Confidence            99999999988    8899999999998876    4555677799999999864 5788999999999888999999999


Q ss_pred             ccccccccC---HHHHHHHHHhcCCEEEEecCCcCCc------ccc-cCCC-CCccEEEecCcCcCCCCc--ceEEEEcc
Q 017640          218 SNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH------MVV-DVQG-LDADFLVASSHKMCGPTG--IGFLFGKS  284 (368)
Q Consensus       218 ~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~------~~~-~~~~-~~~d~~~~s~~K~~g~~G--~G~l~~~~  284 (368)
                      +||||.++|   +++|.++|++|++++|+|++|....      .++ .+.. .+.+++++|+||.||.+|  +||+++++
T Consensus       169 ~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~  248 (387)
T PRK08912        169 LNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFVCAAP  248 (387)
T ss_pred             CCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcCceeEEEecCH
Confidence            999999999   6678999999999999999986211      111 2222 246799999999999888  99999999


Q ss_pred             cccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          285 DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       285 ~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      ++++.+......                     ...+.+.....++..++....+ -.+.++++.++..+++.+.|++.
T Consensus       249 ~~~~~l~~~~~~---------------------~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~~  305 (387)
T PRK08912        249 PLLRVLAKAHQF---------------------LTFTTPPNLQAAVAYGLGKPDD-YFEGMRADLARSRDRLAAGLRRI  305 (387)
T ss_pred             HHHHHHHHHHhh---------------------ccccCChHHHHHHHHHHhCCHH-HHHHHHHHHHHHHHHHHHHHHhC
Confidence            988776533210                     0012222233334444431111 13566777778888888888765

>PTZ00377 alanine aminotransferase; Provisional

Probab=99.93  E-value=8.6e-25  Score=213.06  Aligned_cols=252  Identities=17%  Similarity=0.207  Sum_probs=176.1

Q ss_pred             CcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcC----CC-CCCcEEEeCCHHHHHHHHHHHccCCC
Q 017640           79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN----AS-DSGEIVFTKNATEAINLVAYSWGLSN  153 (368)
Q Consensus        79 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~----~~-~~~~v~~t~g~t~a~~~~~~~~~~~~  153 (368)
                      .|..+++++.+.+......  .+.    +.......++|++++++++    .+ .+++|++|+|+++++.+++.++    
T Consensus        89 ~P~~~~~~~~~~~~~~~~~--~~~----Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l----  158 (481)
T PTZ00377         89 FPADVVARAKEYLNAIGGG--TGA----YTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLL----  158 (481)
T ss_pred             CCHHHHHHHHHHHHhCCCc--ccC----cCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHh----
Confidence            3567777776655543211  111    2223345577777887765    22 2359999999999999999988    


Q ss_pred             C-CCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC--CCCCHHHHHHhccc------CceEEEEcccccccccc
Q 017640          154 L-KSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSR------KTKLVVIHHISNMLASI  224 (368)
Q Consensus       154 ~-~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~l~~------~~~~v~~~~~~n~tG~~  224 (368)
                      + ++||+|++++|.|+.    +...++..|++++.++++++  +.+|+++|++++++      +++++++++|+||||.+
T Consensus       159 ~~~~gD~Vlv~~P~y~~----y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~  234 (481)
T PTZ00377        159 IGDPSDGVMIPIPQYPL----YSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQV  234 (481)
T ss_pred             ccCCCCEEEECCCCchh----HHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcC
Confidence            6 799999999998887    44555667999999998743  67899999999865      78999999999999999


Q ss_pred             cC---HHHHHHHHHhcCCEEEEecCCcCCcc----c---c-----cCCCC----CccEEEecCcCc-CCCCc--ceEEEE
Q 017640          225 LP---IEEIVHWSHDVGAKVLVDACQSVPHM----V---V-----DVQGL----DADFLVASSHKM-CGPTG--IGFLFG  282 (368)
Q Consensus       225 ~~---l~~i~~l~~~~g~~li~D~a~~~~~~----~---~-----~~~~~----~~d~~~~s~~K~-~g~~G--~G~l~~  282 (368)
                      ++   +++|+++|++||++||+|++|..-..    +   +     ++...    ...+++.|+||. +|.+|  +||+++
T Consensus       235 ~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~  314 (481)
T PTZ00377        235 LTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFEL  314 (481)
T ss_pred             CCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEE
Confidence            99   78999999999999999999873111    1   1     11111    124788899995 68888  999987


Q ss_pred             ---cccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH----------HHHhCHHHHHHHH
Q 017640          283 ---KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY----------LSTIGMQKIHAYE  349 (368)
Q Consensus       283 ---~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~----------~~~~g~~~i~~~~  349 (368)
                         ++++++.+......                      ..+++..+..++..+++.          +.. .+..++++.
T Consensus       315 ~~~p~~li~~l~~~~~~----------------------~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~  371 (481)
T PTZ00377        315 TNIPPEVREQIYKLASI----------------------NLCSNVVGQLMTGLMCNPPREGDASYPLYKR-ERDAIFTSL  371 (481)
T ss_pred             eCCCHHHHHHHHHHhhe----------------------ecCCChHHHHHHHHHhCCCCCCcccHHHHHH-HHHHHHHHH
Confidence               77887766543210                      013455566666666631          111 134444456


Q ss_pred             HHHHHHHHHHHHhhcCCC
Q 017640          350 VKWIICSIIVIQERHNTT  367 (368)
Q Consensus       350 ~~l~~~l~~~l~~~~g~t  367 (368)
                      ++..+.+.+.|.+++|++
T Consensus       372 ~~rr~~l~~~L~~~~g~~  389 (481)
T PTZ00377        372 KRRAELLTDELNKIEGVS  389 (481)
T ss_pred             HHHHHHHHHHHhcCCCcE
Confidence            677777888887776643

>PRK09082 methionine aminotransferase; Validated

Probab=99.93  E-value=1.5e-24  Score=206.03  Aligned_cols=262  Identities=17%  Similarity=0.142  Sum_probs=190.0

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCC--CCcEEEeCCHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD--SGEIVFTKNATEAI  142 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~--~~~v~~t~g~t~a~  142 (368)
                      .+.++|+.+... +.++.+.+++.+.+.... .    .+....+..+..+.+.+.+.+++|...  +++|++|+|+++++
T Consensus        30 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~-~----~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al  104 (386)
T PRK09082         30 HGAINLSQGFPDFDGPPYLVEALAYAMAAGH-N----QYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEAL  104 (386)
T ss_pred             CCEEEecCCCCCCCCCHHHHHHHHHHHHcCC-C----CCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHH
Confidence            467888887766 457788888887765321 1    111122335555667777777778753  23799999999999


Q ss_pred             HHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC-CCCCCCHHHHHHhcccCceEEEEccccccc
Q 017640          143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN-DDESPDLDKLKEMLSRKTKLVVIHHISNML  221 (368)
Q Consensus       143 ~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~l~~~~~~v~~~~~~n~t  221 (368)
                      ..++.++    +++||+|++.+|.|.+..    ..++..|++++.++.+ +++.+|++++++++++++++|++++++|||
T Consensus       105 ~~~~~~~----~~~gd~Vli~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPt  176 (386)
T PRK09082        105 FAAILAL----VRPGDEVIVFDPSYDSYA----PAIELAGGRAVRVALQPPDFRVDWQRFAAAISPRTRLIILNTPHNPS  176 (386)
T ss_pred             HHHHHHH----cCCCCEEEEeCCCchhhH----HHHHHcCCEEEEEecCcccccCCHHHHHHhcCccceEEEEeCCCCCC
Confidence            9999988    889999999999888754    3445569999999997 457889999999998899999999999999


Q ss_pred             ccccC---HHHHHHHHHhcCCEEEEecCCcCCcc------c-ccCCC-CCccEEEecCcCcCCCCc--ceEEEEcccccc
Q 017640          222 ASILP---IEEIVHWSHDVGAKVLVDACQSVPHM------V-VDVQG-LDADFLVASSHKMCGPTG--IGFLFGKSDLLS  288 (368)
Q Consensus       222 G~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~------~-~~~~~-~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~  288 (368)
                      |.+++   +++|.++|++||+++|+|++|.....      . ..... .+..++++|+||.||.+|  +||+++++++++
T Consensus       177 G~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv~~~~l~~  256 (386)
T PRK09082        177 GTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAPAALSA  256 (386)
T ss_pred             CcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhhhhhhhhCCHHHHH
Confidence            99987   77889999999999999999863211      1 12222 346799999999999888  999999999887


Q ss_pred             cCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHh
Q 017640          289 AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       289 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~  362 (368)
                      .++....                     ....+.+.....++...++...+ -.+++++..++..+++.+.|++
T Consensus       257 ~~~~~~~---------------------~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~L~~  308 (386)
T PRK09082        257 EFRKVHQ---------------------YNTFTVNTPAQLALADYLRAEPE-HYLELPAFYQAKRDRFRAALAN  308 (386)
T ss_pred             HHHHHHh---------------------hhcCCCChHHHHHHHHHHhCChH-HHHHHHHHHHHHHHHHHHHHHh
Confidence            7664321                     01113444455545444432111 2455667777888888888876

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=99.93  E-value=3.1e-24  Score=202.59  Aligned_cols=252  Identities=13%  Similarity=0.110  Sum_probs=186.4

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL  144 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~  144 (368)
                      +..++|+.+..+ ++++.+.+++.+.......++..+           ..++|+++|++++++++ +|++|+|+++++..
T Consensus        32 ~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~Y~~~~-----------~~~Lr~~ia~~~~~~~~-~I~it~G~~~~l~~   99 (369)
T PRK08153         32 PFRARIGANESGFGPSPSVIAAMREAAAEIWKYGDPE-----------NHDLRHALAAHHGVAPE-NIMVGEGIDGLLGL   99 (369)
T ss_pred             cceeEecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCc-----------cHHHHHHHHHHhCCCHH-HEEEcCCHHHHHHH
Confidence            345699998877 678899999988765433333211           34799999999998765 99999999999999


Q ss_pred             HHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcc-cCceEEEEccccccccc
Q 017640          145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS-RKTKLVVIHHISNMLAS  223 (368)
Q Consensus       145 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~-~~~~~v~~~~~~n~tG~  223 (368)
                      ++.++    +++||.|++.+|+|+...    ..++..|++++.+|.+.++ +|++++++.+. .+++++++++|+||||.
T Consensus       100 ~~~~~----~~~gd~vlv~~p~y~~~~----~~~~~~g~~~~~vp~~~~~-~~~~~l~~~~~~~~~~~i~l~~P~NPtG~  170 (369)
T PRK08153        100 IVRLY----VEPGDPVVTSLGAYPTFN----YHVAGFGGRLVTVPYRDDR-EDLDALLDAARRENAPLVYLANPDNPMGS  170 (369)
T ss_pred             HHHHh----cCCCCEEEECCCcchHHH----HHHHHcCCeEEEeeCCCCC-CCHHHHHHHhcccCCcEEEEeCCCCCCCC
Confidence            99988    889999999999888744    3345569999999986554 68999887664 57899999999999999


Q ss_pred             ccCHHHHHHHHHh--cCCEEEEecCCcCCcc---cccCC-CCCccEEEecCcCcCCCCc--ceEEEEcccccccCCCccc
Q 017640          224 ILPIEEIVHWSHD--VGAKVLVDACQSVPHM---VVDVQ-GLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLG  295 (368)
Q Consensus       224 ~~~l~~i~~l~~~--~g~~li~D~a~~~~~~---~~~~~-~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~~~~~  295 (368)
                      ++|.+++.++++.  ++++||+|++|..-..   ...+. .....+++.|+||.+|.+|  +||+++++++++.+.....
T Consensus       171 ~~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~v~~~~~~~~l~~~~~  250 (369)
T PRK08153        171 WHPAADIVAFIEALPETTLLVLDEAYCETAPAGAAPPIDTDDPNVIRMRTFSKAYGLAGARVGYAIGAPGTIKAFDKVRN  250 (369)
T ss_pred             CCCHHHHHHHHHhCCCCcEEEEeCchhhhcCcccchhhhhcCCCEEEEecchHhccCcchheeeeecCHHHHHHHHHhhc
Confidence            9998777777664  3899999999872211   01111 1235688999999999888  8999999988876653321


Q ss_pred             CCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          296 GGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       296 g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                                             ..+.+...+.++..+++.  ..-.+.++++..+..+++.+.|++.
T Consensus       251 -----------------------~~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~~~~~L~~~  293 (369)
T PRK08153        251 -----------------------HFGMNRIAQAAALAALKD--QAYLAEVVGKIAAARDRIAAIARAN  293 (369)
T ss_pred             -----------------------CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHC
Confidence                                   013456666666666642  1124566677777777777777653

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=99.93  E-value=1.1e-24  Score=209.90  Aligned_cols=255  Identities=13%  Similarity=0.041  Sum_probs=179.3

Q ss_pred             CeEEeccCCCCC-CcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCC--CCCCcEEEeCCHHHHHH
Q 017640           67 KLVYLDNAATSQ-KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINA--SDSGEIVFTKNATEAIN  143 (368)
Q Consensus        67 ~~i~l~~~~~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~--~~~~~v~~t~g~t~a~~  143 (368)
                      ..+.|..+.... .++.+.+++.+.......++.          .....++|+.++++++.  .++++|++|+|+++++.
T Consensus        86 ~~i~L~~g~p~~~~~p~~~~~~~~~~~~~~~Y~~----------~~g~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~  155 (431)
T PRK15481         86 PLHDLAGGNPDPQRLPDLSRYFARLSRTPRLYGD----------APVSPELHAWAARWLRDDCPVAFEIDLTSGAIDAIE  155 (431)
T ss_pred             hhhhhhcCCCChhHhHHHHHHHHHhhhhhhhcCC----------cCCCHHHHHHHHHHHhhccCCcCeEEEecCcHHHHH
Confidence            345666655442 334566666554332211111          22234688889988874  33358999999999999


Q ss_pred             HHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEc-ccccccc
Q 017640          144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIH-HISNMLA  222 (368)
Q Consensus       144 ~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~-~~~n~tG  222 (368)
                      +++.++    +++||.|++.+|+|+.    +...++..|++++.+++++++ +|++.|++++++++++++++ +++||||
T Consensus       156 ~~~~~l----~~pgd~Vlv~~P~y~~----~~~~~~~~g~~~~~v~~~~~g-~~~~~l~~~~~~~~k~i~~~p~p~NPTG  226 (431)
T PRK15481        156 RLLCAH----LLPGDSVAVEDPCFLS----SINMLRYAGFSASPVSVDAEG-MQPEKLERALAQGARAVILTPRAHNPTG  226 (431)
T ss_pred             HHHHHh----CCCCCEEEEeCCCcHH----HHHHHHHcCCeEEeeccCCCC-CCHHHHHHHHhcCCCEEEECCCCCCCCC
Confidence            999998    8999999999997766    555666779999999997655 79999999998888888776 9999999


Q ss_pred             cccCH---HHHHHHHHhc-CCEEEEecCCcCC----ccc-ccCCCCCccEEEecCcCcCCCCc--ceEEEEcccccccCC
Q 017640          223 SILPI---EEIVHWSHDV-GAKVLVDACQSVP----HMV-VDVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMP  291 (368)
Q Consensus       223 ~~~~l---~~i~~l~~~~-g~~li~D~a~~~~----~~~-~~~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~  291 (368)
                      .+++.   ++|.++|++| +++||+|++|..-    ..+ +.. .....++++|+||.|| +|  +||++.++++++.+.
T Consensus       227 ~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~-~~~~vi~~~SfSK~~~-~GlRiG~~i~~~~~~~~~~  304 (431)
T PRK15481        227 CSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQ-TTQRWALIRSVSKALG-PDLRLAFVASDSATSARLR  304 (431)
T ss_pred             ccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcC-CCCCEEEEeeeccccC-CCceeEEEeCCHHHHHHHH
Confidence            99995   4999999999 9999999998722    111 111 2246689999999999 68  999999998877765


Q ss_pred             CcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST-IGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       292 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~-~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      .....                     .....+.....++..+++.-.. .-++.+++..++..+++.+.|.+.
T Consensus       305 ~~~~~---------------------~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~  356 (431)
T PRK15481        305 LRLNS---------------------GTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQY  356 (431)
T ss_pred             HHHhc---------------------cccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            32210                     0113455555555555542110 014566777777777788877764

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.93  E-value=2.4e-24  Score=203.60  Aligned_cols=253  Identities=15%  Similarity=0.134  Sum_probs=182.8

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL  144 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~  144 (368)
                      ++++.|+.+.+. .+++.+.+++.+.......+++.          .. .++|+++++++|++++ +|++|+|+++++..
T Consensus        36 ~~~i~l~~~~~~~~~~~~~~~al~~~~~~~~~Y~~~----------~g-~~lr~~ia~~~~~~~~-~i~~t~G~~~~l~~  103 (371)
T PRK05166         36 PRIAKLGSNENPLGPSPAVRRAFADIAELLRLYPDP----------QG-RALREAIAARTGVPAD-RIILGNGSEDLIAV  103 (371)
T ss_pred             cceEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCC----------cH-HHHHHHHHHHhCcCHH-HEEEcCCHHHHHHH
Confidence            567899988766 56778888887655443323221          11 2699999999998764 99999999999999


Q ss_pred             HHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccc
Q 017640          145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI  224 (368)
Q Consensus       145 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~  224 (368)
                      ++.++    +++||.|++.+|+|+.    +...++..|++++.++.++++.+|++++++.++++++++++++++||||.+
T Consensus       104 ~~~~~----~~~gd~vli~~P~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~  175 (371)
T PRK05166        104 ICRAV----LRPGDRVVTLYPSFPL----HEDYPTMMGARVERVTVTPDLGFDLDALCAAVARAPRMLMFSNPSNPVGSW  175 (371)
T ss_pred             HHHHh----cCCCCEEEEcCCChHH----HHHHHHHcCCeEEEeecCCCCCCCHHHHHHhhhcCCCEEEEeCCCCCCCCC
Confidence            99988    8999999999997765    455667789999999998888899999999998889999999999999999


Q ss_pred             cCHHHHHHHHHh--cCCEEEEecCCcCCcc-----c-cc-CC-CCCccEEEecCcCcCCCCc--ceEEEE-cccccccCC
Q 017640          225 LPIEEIVHWSHD--VGAKVLVDACQSVPHM-----V-VD-VQ-GLDADFLVASSHKMCGPTG--IGFLFG-KSDLLSAMP  291 (368)
Q Consensus       225 ~~l~~i~~l~~~--~g~~li~D~a~~~~~~-----~-~~-~~-~~~~d~~~~s~~K~~g~~G--~G~l~~-~~~li~~l~  291 (368)
                      +|.+++.++++.  +++++|+|++|..-..     + +. +. .....+++.|+||.||.+|  +||+++ ++++++.+.
T Consensus       176 ~~~~~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l~~~~~  255 (371)
T PRK05166        176 LTADQLARVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDPELVGLLD  255 (371)
T ss_pred             CCHHHHHHHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCCHHHHHHHH
Confidence            997777666653  4789999999862211     1 11 11 1234688999999999888  999876 566665554


Q ss_pred             CcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       292 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      .....                       ...+.....++..++..-  .-+++..++..+..+++.+.|++.
T Consensus       256 ~~~~~-----------------------~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~r~~l~~~L~~~  302 (371)
T PRK05166        256 RVRTP-----------------------FNVNGAAQAAALAALDDE--EHLAKGVALALAERERLKKELAEM  302 (371)
T ss_pred             HhccC-----------------------CCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHC
Confidence            32210                       123444443444444321  124555566666777778887765

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.93  E-value=1.5e-24  Score=203.84  Aligned_cols=253  Identities=12%  Similarity=0.096  Sum_probs=182.2

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL  144 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~  144 (368)
                      .+++.|+.+.+. ++|+.+++++.+.+.....+|.           ....++|++++++++.+++ +|++|+|+++++..
T Consensus        20 ~~~i~l~~~~~~~~~p~~~~~a~~~~~~~~~~y~~-----------~~~~~lr~~ia~~~~~~~~-~i~it~Ga~~~l~~   87 (356)
T PRK08056         20 DQLLDFSANINPLGMPVSLKRAIIDNLDCAERYPD-----------VEYRHLHQALARHHQVPAS-WILAGNGETESIFA   87 (356)
T ss_pred             hhEEEeccccCCCCCCHHHHHHHHHHHHhcccCcC-----------ccHHHHHHHHHHHhCcChh-hEEECCCHHHHHHH
Confidence            567899988776 7889999999887765432221           1145899999999999765 99999999999999


Q ss_pred             HHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC--CCCCHHHHHHhcccCceEEEEcccccccc
Q 017640          145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLVVIHHISNMLA  222 (368)
Q Consensus       145 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~l~~~~~~v~~~~~~n~tG  222 (368)
                      ++.++     .+|+ +++.+|.|..    +...++..|++++.++++++  +.+| +++++.+.+++++|++++|+||||
T Consensus        88 ~~~~l-----~~g~-viv~~P~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~~~~k~v~l~~p~NPTG  156 (356)
T PRK08056         88 VVSGL-----KPRR-AMIVTPGFAE----YRRALQQVGCEIRRYSLREADGWQLT-DAILEALTPDLDCLFLCTPNNPTG  156 (356)
T ss_pred             HHHHh-----CCCC-EEEeCCCcHH----HHHHHHHcCCeEEEEecccccCCCcc-HHHHHhccCCCCEEEEeCCcCCCC
Confidence            99865     4576 5667786554    55667778999999998743  4555 456666778899999999999999


Q ss_pred             cccC---HHHHHHHHHhcCCEEEEecCCcCCc----ccc-cCCCCCccEEEecCcCcCCCCc--ceEEEEc-ccccccCC
Q 017640          223 SILP---IEEIVHWSHDVGAKVLVDACQSVPH----MVV-DVQGLDADFLVASSHKMCGPTG--IGFLFGK-SDLLSAMP  291 (368)
Q Consensus       223 ~~~~---l~~i~~l~~~~g~~li~D~a~~~~~----~~~-~~~~~~~d~~~~s~~K~~g~~G--~G~l~~~-~~li~~l~  291 (368)
                      .+++   +++|+++|++||+++|+|++|.--.    ..+ .+...+.++++.|+||.||.+|  +||++++ +++++.+.
T Consensus       157 ~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~~~~~~l~  236 (356)
T PRK08056        157 LLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLTKFYAIPGLRLGYLVNSDDAAVARMR  236 (356)
T ss_pred             CCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCCEEEEEechhhccCcchhheeeecCCHHHHHHHH
Confidence            9999   7889999999999999999975211    001 1233457799999999999888  9999985 45655554


Q ss_pred             CcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       292 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      ....                       ..+.+.....++..+++.  ..-.+.++++.++.++++.+.|.+++++
T Consensus       237 ~~~~-----------------------~~~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~  286 (356)
T PRK08056        237 RQQM-----------------------PWSINAFAALAGEVILQD--RAYQQATWQWLAEEGARFYQALCALPLL  286 (356)
T ss_pred             HhCC-----------------------CCchhHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            3221                       113333444444444421  1114566677778888888888776554

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.93  E-value=3.8e-24  Score=204.50  Aligned_cols=202  Identities=15%  Similarity=0.151  Sum_probs=157.8

Q ss_pred             CCCeEEeccCCCC-----CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcC------CCCCCcEE
Q 017640           65 SKKLVYLDNAATS-----QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN------ASDSGEIV  133 (368)
Q Consensus        65 ~~~~i~l~~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------~~~~~~v~  133 (368)
                      +++++.|..+.+.     ++|+.+.+++.+.+.....+    .|.    ......++|++++++++      .++ ++|+
T Consensus        31 ~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~~~~~----~Y~----~~~G~~~lr~aia~~~~~~~g~~~~~-~~I~  101 (409)
T PLN00143         31 HRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRSAKFN----SYA----PTGGILPARRAIADYLSNDLPYQLSP-DDVY  101 (409)
T ss_pred             CCceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhCcCCC----CCC----CCCCCHHHHHHHHHHHHhhcCCCCCH-hhEE
Confidence            4789999998875     78889999998877642101    010    01122367788888773      333 5999


Q ss_pred             EeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC--CCCCCCHHHHHHhcccCceE
Q 017640          134 FTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDESPDLDKLKEMLSRKTKL  211 (368)
Q Consensus       134 ~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~l~~~~~~  211 (368)
                      +|+|+++++.+++.++    +++||.|++.+|.|+.    +...++..|++++.++++  .++.+|+++|++++.++++.
T Consensus       102 it~G~~~al~~~~~~l----~~~gd~v~v~~P~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~  173 (409)
T PLN00143        102 LTLGCKHAAEIIIKVL----ARPEANILLPRPGFPD----VETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADENTIA  173 (409)
T ss_pred             EecChHHHHHHHHHHH----cCCCCEEEEcCCCCcC----HHHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhcccCCEE
Confidence            9999999999999998    8999999999998887    444556679999999985  34678999999999888999


Q ss_pred             EEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCc------ccc-cCCCCCccEEEecCcCcCCCCc--ceE
Q 017640          212 VVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH------MVV-DVQGLDADFLVASSHKMCGPTG--IGF  279 (368)
Q Consensus       212 v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~------~~~-~~~~~~~d~~~~s~~K~~g~~G--~G~  279 (368)
                      +++++|+||||.+++   +++|+++|++|+++||+|++|..-.      .++ .+......+++.|+||.|+.+|  +||
T Consensus       174 ~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRvG~  253 (409)
T PLN00143        174 MVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPGWGLGW  253 (409)
T ss_pred             EEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcCCCccceEE
Confidence            999999999999999   7788889999999999999987311      111 1222235689999999999888  999


Q ss_pred             EEEc
Q 017640          280 LFGK  283 (368)
Q Consensus       280 l~~~  283 (368)
                      ++++
T Consensus       254 ~v~~  257 (409)
T PLN00143        254 LVTC  257 (409)
T ss_pred             EEee
Confidence            9983

>PRK08363 alanine aminotransferase; Validated

Probab=99.93  E-value=2.5e-24  Score=205.44  Aligned_cols=264  Identities=14%  Similarity=0.135  Sum_probs=186.2

Q ss_pred             CCeEEeccCCCC----CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----C--CCCCCcEEEe
Q 017640           66 KKLVYLDNAATS----QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----N--ASDSGEIVFT  135 (368)
Q Consensus        66 ~~~i~l~~~~~~----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~--~~~~~~v~~t  135 (368)
                      .+++.|..+.++    ++++.+.+++.+.+.... +    .+    .......++|+++++++    |  .++ ++|++|
T Consensus        30 ~~~i~l~~g~p~~~~~~p~~~~~~~~~~~~~~~~-~----~Y----~~~~g~~~lr~~ia~~~~~~~g~~~~~-~~i~it   99 (398)
T PRK08363         30 IKVIRLNIGDPVKFDFQPPEHMKEAYCRAIKEGH-N----YY----GPSEGLPELREAIVKREKRKNGVDITP-DDVRVT   99 (398)
T ss_pred             CCeEEEeCCCCCcCCCCCCHHHHHHHHHHHHcCC-C----CC----CCCCCcHHHHHHHHHHHHHhcCCCCCh-hhEEEe
Confidence            578999998873    578888888887765320 0    01    01122347888888877    3  333 499999


Q ss_pred             CCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEE-eCCCC-CCCCHHHHHHhcccCceEEE
Q 017640          136 KNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL-NLNDD-ESPDLDKLKEMLSRKTKLVV  213 (368)
Q Consensus       136 ~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v-~~~~~-~~~d~~~l~~~l~~~~~~v~  213 (368)
                      +|+++|+.+++.++    +++||.|++.+|+|+...    ..++..|.+++.+ +.+++ +.+|++.+++++.+++++|+
T Consensus       100 ~G~~~al~~~~~~~----~~~gd~Vl~~~p~y~~~~----~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~  171 (398)
T PRK08363        100 AAVTEALQLIFGAL----LDPGDEILIPGPSYPPYT----GLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKITEKTKAIA  171 (398)
T ss_pred             CCHHHHHHHHHHHh----CCCCCEEEEcCCCCcchH----HHHHHcCCEEEEeccccccCCcCCHHHHHhhCCcceEEEE
Confidence            99999999999988    899999999999888753    4556678888888 44433 57899999999988899999


Q ss_pred             EcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc-----c-ccCCCCCccEEEecCcCcCCCCc--ceEEEE
Q 017640          214 IHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM-----V-VDVQGLDADFLVASSHKMCGPTG--IGFLFG  282 (368)
Q Consensus       214 ~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~-----~-~~~~~~~~d~~~~s~~K~~g~~G--~G~l~~  282 (368)
                      +++++||||.+++   +++|.++|+++|+++|+|++|.....     + ..+......+++.|+||.|+.+|  +||+++
T Consensus       172 l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~  251 (398)
T PRK08363        172 VINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATGWRLGYIYF  251 (398)
T ss_pred             EECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhccCCccceEEEEEE
Confidence            9999999999999   88899999999999999999873211     1 11222234678899999988777  999998


Q ss_pred             --cccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Q 017640          283 --KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVI  360 (368)
Q Consensus       283 --~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l  360 (368)
                        ++++++.+........                 ... .+.+.....++..++....+ -++.++++.++..+++.+.|
T Consensus       252 ~~~~~~~~~l~~~~~~~~-----------------~~~-~~~s~~~q~~~~~~l~~~~~-~l~~~~~~~~~~~~~l~~~L  312 (398)
T PRK08363        252 VDPEGKLAEVREAIDKLA-----------------RIR-LCPNTPAQFAAIAGLTGPMD-YLEEYMKKLKERRDYIYKRL  312 (398)
T ss_pred             eCcHHHHHHHHHHHHHHh-----------------ccc-ccCChHHHHHHHHHHhCChH-HHHHHHHHHHHHHHHHHHHH
Confidence              5566555443221000                 000 13344444555555542111 25566777888888888888


Q ss_pred             HhhcCC
Q 017640          361 QERHNT  366 (368)
Q Consensus       361 ~~~~g~  366 (368)
                      .+++++
T Consensus       313 ~~~~~~  318 (398)
T PRK08363        313 NEIPGI  318 (398)
T ss_pred             hcCCCC
Confidence            776553

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.93  E-value=3.5e-24  Score=199.71  Aligned_cols=204  Identities=17%  Similarity=0.275  Sum_probs=161.8

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHH--hhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEA--YNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI  142 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~  142 (368)
                      .+.++|+.+.+. ++++.+.+++.+.+..  +..++.           ....++|++++++++.+++ +|++|+|+++++
T Consensus        18 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-----------~g~~~lr~~ia~~~~~~~~-~I~~t~G~~~~l   85 (337)
T PRK03967         18 NYRIWLDKNENPFDLPEELKEEIFEELKRVPFNRYPH-----------ITSDPLREAIAEFYGLDAE-NIAVGNGSDELI   85 (337)
T ss_pred             CceEEecCCCCCCCCCHHHHHHHHHHhhcCccccCCC-----------CCHHHHHHHHHHHhCcCcc-eEEEcCCHHHHH
Confidence            457999999877 6778999998887753  222221           1234799999999998764 999999999999


Q ss_pred             HHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccc
Q 017640          143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLA  222 (368)
Q Consensus       143 ~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG  222 (368)
                      ..++..+      +||+|++.+|.|+.    +...++..|++++.++.++++.+|++.+++.+ ++++++++++|+||||
T Consensus        86 ~~~~~~~------~gd~V~v~~P~y~~----~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~-~~~~~v~~~~P~NPtG  154 (337)
T PRK03967         86 SYLVKLF------EGKHIVITPPTFGM----YSFYAKLNGIPVIDVPLKEDFTIDGERIAEKA-KNASAVFICSPNNPTG  154 (337)
T ss_pred             HHHHHHh------CCCeEEEeCCChHH----HHHHHHHcCCeEEEeecCCCCCcCHHHHHHhc-cCCCEEEEeCCCCCCC
Confidence            9887654      69999999997763    55566778999999999877889999998875 5678999999999999


Q ss_pred             cccCHHHHHHHHHhcCCEEEEecCCcCCcc-c-cc-CCCCCccEEEecCcCcCCCCc--ceEEEEcccccccCCCc
Q 017640          223 SILPIEEIVHWSHDVGAKVLVDACQSVPHM-V-VD-VQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPF  293 (368)
Q Consensus       223 ~~~~l~~i~~l~~~~g~~li~D~a~~~~~~-~-~~-~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~~~  293 (368)
                      .+++.++|.++++ +++++|+|++|..-.. + .. .......+++.|+||.||.+|  +||+++++++++.+...
T Consensus       155 ~~~~~~~l~~i~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~~~i~~~~~~  229 (337)
T PRK03967        155 NLQPEEEILKVLE-TGKPVVLDEAYAEFSGKSLIGLIDEYPNLILLRTFSKAFGLAGIRAGYAIANEEIIDALYRI  229 (337)
T ss_pred             CCCCHHHHHHHHh-cCCEEEEECchhhhcccchHHHHhhCCCEEEEecchHhhcchhhhheeeecCHHHHHHHHhh
Confidence            9999999999995 7999999999972110 1 11 112235688899999999888  99999999888776643

>PRK09148 aminotransferase; Validated

Probab=99.93  E-value=4.1e-24  Score=204.14  Aligned_cols=261  Identities=15%  Similarity=0.129  Sum_probs=178.5

Q ss_pred             CCCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----CCC--CCCcEEEeCC
Q 017640           65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS--DSGEIVFTKN  137 (368)
Q Consensus        65 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~--~~~~v~~t~g  137 (368)
                      +++++.|+.+.+. ++++.+.+++.+.+...    ....|.    ......++|+++++++    |.+  ++++|++|+|
T Consensus        29 ~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~----~~~~Y~----~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G  100 (405)
T PRK09148         29 GADIIDLGMGNPDLPTPQHIVDKLCETAQDP----RTHRYS----ASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLG  100 (405)
T ss_pred             CCCeEEcCCCCCCCCCCHHHHHHHHHHHcCc----ccCCCC----CCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCC
Confidence            3567899888776 45777888877665321    101111    1122336777777766    443  3237999999


Q ss_pred             HHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC--CCCCHHHHHHhcccCceEEEEc
Q 017640          138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLVVIH  215 (368)
Q Consensus       138 ~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~l~~~~~~v~~~  215 (368)
                      +++++..++.++    +++||.|++++|+|+.....    ++..|++++.++.+.+  +..+++++.+...+++++++++
T Consensus       101 ~~~al~~~~~~l----~~~gd~Vl~~~P~y~~~~~~----~~~~g~~v~~v~~~~~~~~~~~l~~~~~~~~~~~~~v~l~  172 (405)
T PRK09148        101 SKEGFANMAQAI----TAPGDVILCPNPSYPIHAFG----FIMAGGVIRSVPAEPDEEFFPALERAVRHSIPKPIALIVN  172 (405)
T ss_pred             hHHHHHHHHHHh----cCCCCEEEEcCCCCcccHHH----HHhcCCEEEEEeCCCCCCCccCHHHHHhhccccceEEEEe
Confidence            999999999998    89999999999999885443    3456999999998754  3334444433344678999999


Q ss_pred             ccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCc----c--cc-cCCC-CCccEEEecCcCcCCCCc--ceEEEE
Q 017640          216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----M--VV-DVQG-LDADFLVASSHKMCGPTG--IGFLFG  282 (368)
Q Consensus       216 ~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~----~--~~-~~~~-~~~d~~~~s~~K~~g~~G--~G~l~~  282 (368)
                      +|+||||.+++   +++|.++|++||++||+|++|..-.    .  .+ .+.. .+..+++.|+||.+|.+|  +||+++
T Consensus       173 ~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v~  252 (405)
T PRK09148        173 YPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVG  252 (405)
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcchheeeeeC
Confidence            99999999999   4688899999999999999987311    1  11 1211 234567899999999888  999999


Q ss_pred             cccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHh
Q 017640          283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       283 ~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~  362 (368)
                      ++++++.+.....                     +...+.+.+...++..+++..+. -++.++++.++..+++.+.|++
T Consensus       253 ~~~~i~~l~~~~~---------------------~~~~~~~~~~q~~~~~~L~~~~~-~~~~~~~~~~~~r~~l~~~L~~  310 (405)
T PRK09148        253 NERLIAALTRVKS---------------------YLDYGAFTPIQVAATAALNGPQD-CIAEMRELYKKRRDVLVESFGR  310 (405)
T ss_pred             CHHHHHHHHHHHH---------------------HhccCCChHHHHHHHHHHhCcHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            9998877653321                     00112333444444444432111 2456677778888888888876


Q ss_pred             h
Q 017640          363 R  363 (368)
Q Consensus       363 ~  363 (368)
                      .
T Consensus       311 ~  311 (405)
T PRK09148        311 A  311 (405)
T ss_pred             c
Confidence            3

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.93  E-value=4.7e-24  Score=203.59  Aligned_cols=259  Identities=18%  Similarity=0.221  Sum_probs=184.9

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcC-----CCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN-----ASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~-----~~~~~~v~~t~g~t  139 (368)
                      .++++|+.+.+. ++++.+.+++.+.......++          ......++|++++++++     .++ ++|++|+|++
T Consensus        30 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~Y~----------~~~g~~~lr~~ia~~~~~~~~~~~~-~~i~~t~G~~   98 (397)
T PRK07568         30 IKVYHLNIGQPDIKTPEVFFEAIKNYDEEVLAYS----------HSQGIPELREAFAKYYKKWGIDVEP-DEILITNGGS   98 (397)
T ss_pred             CCEEEecCCCCCCCCCHHHHHHHHHHhcCCcCcC----------CCCCCHHHHHHHHHHHHHhCCCCCc-ceEEEcCChH
Confidence            568999999887 578888888776543221111          12234478888888873     444 4999999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC-CC-C-CCHHHHHHhcccCceEEEEcc
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DE-S-PDLDKLKEMLSRKTKLVVIHH  216 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~-~-~d~~~l~~~l~~~~~~v~~~~  216 (368)
                      +++..++.++    +++||+|++++|.|...    ...++..|++++.++.+. ++ . .++++|++++++++++|++++
T Consensus        99 ~al~~~~~~l----~~~gd~Vl~~~p~y~~~----~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~~~~~v~i~~  170 (397)
T PRK07568         99 EAILFAMMAI----CDPGDEILVPEPFYANY----NGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITPKTKAILISN  170 (397)
T ss_pred             HHHHHHHHHh----cCCCCEEEEecCCCccH----HHHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcCccceEEEEEC
Confidence            9999999887    78999999999987753    344566799999999863 33 3 367999999988999999999


Q ss_pred             cccccccccC---HHHHHHHHHhcCCEEEEecCCcCCc----c--c-ccCCC-CCccEEEecCcCcCCCCc--ceEEEEc
Q 017640          217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----M--V-VDVQG-LDADFLVASSHKMCGPTG--IGFLFGK  283 (368)
Q Consensus       217 ~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~----~--~-~~~~~-~~~d~~~~s~~K~~g~~G--~G~l~~~  283 (368)
                      ++||||.+++   +++|+++|+++|+++|+|++|..-.    .  . .++.. .+..+++.|+||.||++|  +||++++
T Consensus       171 p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~  250 (397)
T PRK07568        171 PGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLISK  250 (397)
T ss_pred             CCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCCCcceEEEecC
Confidence            9999999998   6789999999999999999987221    1  1 12222 235688899999999877  9999985


Q ss_pred             -ccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHh
Q 017640          284 -SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       284 -~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~  362 (368)
                       +++++.+......                      ..+.+.....++..+++..+. -.+.++++.++..+.+.+.|.+
T Consensus       251 ~~~~~~~~~~~~~~----------------------~~~~s~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~  307 (397)
T PRK07568        251 NKELIAAAMKLCQA----------------------RLSPPTLEQIGAAALLDTPES-YFDEVREEYKKRRDILYEELNK  307 (397)
T ss_pred             CHHHHHHHHHHhhc----------------------cCCCCcHHHHHHHHHhhCCHH-HHHHHHHHHHHHHHHHHHHHhc
Confidence             5666544322110                      013344455555555543222 2556677777888888888877


Q ss_pred             hcCC
Q 017640          363 RHNT  366 (368)
Q Consensus       363 ~~g~  366 (368)
                      +.++
T Consensus       308 ~~~~  311 (397)
T PRK07568        308 IPGV  311 (397)
T ss_pred             CCCc
Confidence            6553

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.93  E-value=1.6e-24  Score=203.50  Aligned_cols=248  Identities=16%  Similarity=0.137  Sum_probs=176.5

Q ss_pred             CCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHH
Q 017640           66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV  145 (368)
Q Consensus        66 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~  145 (368)
                      .+.+.|+.+.+...++...     .......+|..+           ..++|+++|+++|++++ +|++|+|+++++.++
T Consensus        31 ~~~~~l~~ne~~~~~~~~~-----~~~~~~~Yp~~~-----------~~~Lr~aia~~~~~~~~-~I~it~Gs~~~i~~~   93 (354)
T PRK04635         31 RGDIWINANESPFNNEYKL-----DLARLNRYPECQ-----------PPELINAYSAYAGVAPE-QILTSRGADEAIELL   93 (354)
T ss_pred             CCcEEeeCCCCCCCCChhh-----hhHHhccCCCCC-----------HHHHHHHHHHHhCcCHH-HEEEeCCHHHHHHHH
Confidence            3558888888774333211     111222333221           23799999999999875 999999999999999


Q ss_pred             HHHccCCCCCCC-CEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccc
Q 017640          146 AYSWGLSNLKSG-DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI  224 (368)
Q Consensus       146 ~~~~~~~~~~~g-d~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~  224 (368)
                      +.++    +++| |+|++.+|.|+.    +...++..|++++.+|+++++.+|++.++ .+ +++++|++++|+||||.+
T Consensus        94 ~~~~----~~~g~d~vlv~~P~y~~----y~~~~~~~g~~v~~v~~~~~~~~~~~~l~-~~-~~~~li~i~nP~NPTG~~  163 (354)
T PRK04635         94 IRAF----CEPGQDSIACFGPTYGM----YAISAETFNVGVKALPLTADYQLPLDYIE-QL-DGAKLVFICNPNNPTGTV  163 (354)
T ss_pred             HHHh----cCCCCCeEEEcCCChHH----HHHHHHHcCCEEEEEecCCCCCCCHHHHH-hc-cCCCEEEEeCCCCCCCcc
Confidence            9998    7888 899999997665    55667778999999999877888999887 34 688999999999999999


Q ss_pred             cCHHHHHHHHHhc-CCEEEEecCCcCCccc---ccC-CCCCccEEEecCcCcCCCCc--ceEEEEcccccccCCCcccCC
Q 017640          225 LPIEEIVHWSHDV-GAKVLVDACQSVPHMV---VDV-QGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGG  297 (368)
Q Consensus       225 ~~l~~i~~l~~~~-g~~li~D~a~~~~~~~---~~~-~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~~~~~g~  297 (368)
                      +|.+++.++++.. +++||+|++|......   .++ ......+++.|+||.||++|  +||+++++++++.+......+
T Consensus       164 ~~~~~l~~l~~~~~~~~vivDeay~~~~~~~s~~~~~~~~~~~iv~~S~SK~~~l~GlRlG~~i~~~~~~~~l~~~~~~~  243 (354)
T PRK04635        164 IDRADIEQLIEMTPDAIVVVDEAYIEFCPEYSVADLLASYPNLVVLRTLSKAFALAGARCGFTLANEELIEILMRVIAPY  243 (354)
T ss_pred             CCHHHHHHHHHhCCCcEEEEeCchHhhccCcchHHHHhhCCCEEEEechHHHhhhhHHHHhhhhCCHHHHHHHHhhcCCC
Confidence            9999999998863 7999999998632211   111 12234578889999999888  899999999988766433211


Q ss_pred             cceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHH---HHHHHHHHHHHHHHHHhhcCC
Q 017640          298 EMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI---HAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i---~~~~~~l~~~l~~~l~~~~g~  366 (368)
                                             +.+.....   .++..+.+.+.+.+   .++..+..+++.+.|.+.+++
T Consensus       244 -----------------------~~~~~~~~---~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~  289 (354)
T PRK04635        244 -----------------------PVPLPVSE---IATQALSEAGLARMKFQVLDLNAQGARLQAALSMYGGA  289 (354)
T ss_pred             -----------------------CCCHHHHH---HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence                                   22332222   33444444344433   344555567788888776443

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=99.93  E-value=2.3e-24  Score=205.87  Aligned_cols=262  Identities=14%  Similarity=0.154  Sum_probs=185.2

Q ss_pred             CCeEEeccCCCC-----CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcC-----CCCCCcEEEe
Q 017640           66 KKLVYLDNAATS-----QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN-----ASDSGEIVFT  135 (368)
Q Consensus        66 ~~~i~l~~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~-----~~~~~~v~~t  135 (368)
                      ++++.|+.+.+.     ++++.+.+++.+.+......        ++.......++|++++++++     .++ ++|++|
T Consensus        31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~--------~Y~~~~g~~~lr~aia~~~~~~~~~~~~-~~i~~t  101 (401)
T TIGR01264        31 KPMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDSGKYN--------GYAPTVGALSAREAIASYYHNPDGPIEA-DDVVLC  101 (401)
T ss_pred             CCeeecCCCCCCCcCCCCCCHHHHHHHHHHHhccCCC--------CCCCCCCCHHHHHHHHHHHhhcCCCCCH-HHEEEC
Confidence            567899988763     56788888888776542111        01111223478888999887     333 489999


Q ss_pred             CCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC--CCCCCHHHHHHhcccCceEEE
Q 017640          136 KNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVV  213 (368)
Q Consensus       136 ~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~~~~~v~  213 (368)
                      +|+++++.+++.++    +++||+|++++|.|..    +...++..|++++.++++.  ++.+|++.+++.+.+++++++
T Consensus       102 ~G~~~al~~~~~~l----~~~gd~v~i~~P~y~~----~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~  173 (401)
T TIGR01264       102 SGCSHAIEMCIAAL----ANAGQNILVPRPGFPL----YETLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDEKTAALI  173 (401)
T ss_pred             cChHHHHHHHHHHh----CCCCCEEEEeCCCChh----HHHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhccCceEEE
Confidence            99999999999988    7899999999997765    4556677799999998863  478899999999988899999


Q ss_pred             EcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCc------ccc-cCCCCCccEEEecCcCcCCCCc--ceEEE
Q 017640          214 IHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH------MVV-DVQGLDADFLVASSHKMCGPTG--IGFLF  281 (368)
Q Consensus       214 ~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~------~~~-~~~~~~~d~~~~s~~K~~g~~G--~G~l~  281 (368)
                      +++++||||.+++   +++|+++|+++|+++|+|++|..-.      .++ .+......+++.|+||.|+.+|  +||++
T Consensus       174 ~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~iv  253 (401)
T TIGR01264       174 VNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKRWLVPGWRLGWII  253 (401)
T ss_pred             EcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEccCcccCCCccceEEEEE
Confidence            9999999999998   7788999999999999999987311      111 1211123588999999999888  99999


Q ss_pred             Ecc------cccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 017640          282 GKS------DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIIC  355 (368)
Q Consensus       282 ~~~------~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~  355 (368)
                      +++      ++++.+.....                      ....++.....++..+++...+.-++..+++.++..++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~  311 (401)
T TIGR01264       254 IHDRRGILRDIRDGLVKLSQ----------------------RILGPCTIVQGALPSILLRTPQEYFDGTLSVLESNAML  311 (401)
T ss_pred             ecCcchhHHHHHHHHHHHhh----------------------ccCCCCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            874      23322221110                      01123444455555555421112255666777777788


Q ss_pred             HHHHHHhhcCC
Q 017640          356 SIIVIQERHNT  366 (368)
Q Consensus       356 l~~~l~~~~g~  366 (368)
                      +.+.|.+.+|+
T Consensus       312 l~~~L~~~~~~  322 (401)
T TIGR01264       312 CYGALAAVPGL  322 (401)
T ss_pred             HHHHHHhCCCC
Confidence            88888776553

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.93  E-value=1.8e-24  Score=202.87  Aligned_cols=217  Identities=15%  Similarity=0.151  Sum_probs=163.9

Q ss_pred             HHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCC-CEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC
Q 017640          114 ELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSG-DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND  192 (368)
Q Consensus       114 ~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~g-d~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~  192 (368)
                      .++++++++++|++++ +|++|+|+++++.++++++    +++| |.|++.+|+|+.    +...++..|++++.++.++
T Consensus        60 ~~l~~~~a~~~g~~~~-~I~~~~Gs~e~i~~~~~~~----~~~g~~~vli~~P~y~~----y~~~~~~~G~~~~~v~~~~  130 (351)
T PRK01688         60 KAVIENYAAYAGVKPE-QVLVSRGADEGIELLIRAF----CEPGKDAILYCPPTYGM----YSVSAETIGVEIRTVPTLD  130 (351)
T ss_pred             HHHHHHHHHHhCCCHH-HEEEcCCHHHHHHHHHHHh----cCCCCCEEEEcCCCHHH----HHHHHHHcCCEEEEeecCC
Confidence            3799999999999875 9999999999999999988    7887 899999996654    6667788899999999988


Q ss_pred             CCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHh--cCCEEEEecCCcCCccc---cc-CCCCCccEEEe
Q 017640          193 DESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHD--VGAKVLVDACQSVPHMV---VD-VQGLDADFLVA  266 (368)
Q Consensus       193 ~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~--~g~~li~D~a~~~~~~~---~~-~~~~~~d~~~~  266 (368)
                      ++.+|++++++++ +++++|++++|+||||.+++.+++.++++.  .++++|+|++|.--...   .+ +......+++.
T Consensus       131 ~~~~d~~~l~~~~-~~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~~s~~~~~~~~~n~iv~r  209 (351)
T PRK01688        131 NWQLDLPAIADNL-DGVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLVILR  209 (351)
T ss_pred             CCCCCHHHHHHhc-cCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCCCChHHHHhhCCCEEEEe
Confidence            8899999999988 588999999999999999997777776653  26889999998632210   11 12234668889


Q ss_pred             cCcCcCCCCc--ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC---
Q 017640          267 SSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG---  341 (368)
Q Consensus       267 s~~K~~g~~G--~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g---  341 (368)
                      |+||.||.+|  +||+++++++++.+......+                       ..+.....++..++   ...+   
T Consensus       210 SfSK~~glaGlRiGy~i~~~~~i~~l~~~~~~~-----------------------~v~~~~~~~a~~~L---~~~~~~~  263 (351)
T PRK01688        210 TLSKAFALAGLRCGFTLANEEVINLLLKVIAPY-----------------------PLSTPVADIAAQAL---SPQGIAA  263 (351)
T ss_pred             cchHhhcCHHHHHhHHhCCHHHHHHHHhccCCC-----------------------CCCHHHHHHHHHHH---hcchHHH
Confidence            9999999999  799999999988776543211                       22233233333333   3222   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          342 MQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       342 ~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      ++...++..+.++++.+.|.++.++
T Consensus       264 ~~~~~~~~~~~r~~l~~~L~~~~~~  288 (351)
T PRK01688        264 MRERVAEINANRQWLIAALKEIPCV  288 (351)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            3444555666778888888877554

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=99.93  E-value=3.3e-24  Score=202.80  Aligned_cols=254  Identities=13%  Similarity=0.133  Sum_probs=179.9

Q ss_pred             CeEEeccCCCC-CCcHHHHHHHHHHHHHh---hccCCCCcchhhHHHHHHHHHHHHHHHHHcC--------CCCCCcEEE
Q 017640           67 KLVYLDNAATS-QKPIAVLKALQNYYEAY---NSNVHRGIHFLSAKATDEYELARKKVAAFIN--------ASDSGEIVF  134 (368)
Q Consensus        67 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~--------~~~~~~v~~  134 (368)
                      +++.|+.+.+. ++|+.+.+++.+.+...   ..++.           ....++|++++++++        +++ ++|++
T Consensus        29 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-----------~G~~~Lr~aia~~~~~~~~~~~~v~~-~~I~i   96 (374)
T PRK02610         29 QLDRLDTNEFPYDLPPDLKQKLAWLYQQGIESNRYPD-----------GGHEALKQAIAEYVNESAAGSSQITP-ANISV   96 (374)
T ss_pred             ceeEecCCCCCCCCCHHHHHHHHHHHhhcccccCCCC-----------CchHHHHHHHHHHhCccccccCCCCH-HHEEE
Confidence            47889998887 68889999998876542   11221           123478999999987        444 48999


Q ss_pred             eCCHHHHHHHHHHHccCCCCCCCC-EEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC-CCCCCHHHHHHhcc----cC
Q 017640          135 TKNATEAINLVAYSWGLSNLKSGD-EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLS----RK  208 (368)
Q Consensus       135 t~g~t~a~~~~~~~~~~~~~~~gd-~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~l~----~~  208 (368)
                      |+|+++++..++.++    +.+|| .|++.+|.|+.    +...++..|++++.++.++ ++.+|+++|+++++    .+
T Consensus        97 t~Ga~~al~~~~~~~----~~~g~~~Vlv~~P~y~~----~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~  168 (374)
T PRK02610         97 GNGSDELIRSLLIAT----CLGGEGSILVAEPTFSM----YGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNPP  168 (374)
T ss_pred             cCChHHHHHHHHHHH----cCCCCCeEEEcCCChHH----HHHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHhhcCCC
Confidence            999999999888776    56775 89999996665    5666777899999999875 47899999999886    47


Q ss_pred             ceEEEEcccccccccccCHHHHHHHHH-hcCCEEEEecCCcCCc--ccc-cCCCCCccEEEecCcCcCCCCc--ceEEEE
Q 017640          209 TKLVVIHHISNMLASILPIEEIVHWSH-DVGAKVLVDACQSVPH--MVV-DVQGLDADFLVASSHKMCGPTG--IGFLFG  282 (368)
Q Consensus       209 ~~~v~~~~~~n~tG~~~~l~~i~~l~~-~~g~~li~D~a~~~~~--~~~-~~~~~~~d~~~~s~~K~~g~~G--~G~l~~  282 (368)
                      +++|++++|+||||.+++.+++.++.+ .++++||+|++|..-.  ..+ .+......+++.|+||.||.+|  +||++.
T Consensus       169 ~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~ivi~SfSK~~g~~GlRiG~~v~  248 (374)
T PRK02610        169 VRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEFSQTTLVGELAQHPNWVILRTFSKAFRLAAHRVGYAIG  248 (374)
T ss_pred             ceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEeccccccCccchHHHHhcCCCEEEEEecchhccCcccceeeeec
Confidence            899999999999999999766655543 2589999999987321  111 1222234578899999999888  999999


Q ss_pred             cccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHh
Q 017640          283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       283 ~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~  362 (368)
                      ++++++.+......+                       +.+.....++..+++..+.. .+.+++..+ ..+.+.+.|++
T Consensus       249 ~~~l~~~l~~~~~~~-----------------------~~~~~~q~a~~~~l~~~~~~-~~~~~~~~~-~r~~l~~~L~~  303 (374)
T PRK02610        249 HPELIAVLEKVRLPY-----------------------NLPSFSQLAAQLALEHRQEL-LAAIPEILQ-ERDRLYQALQE  303 (374)
T ss_pred             CHHHHHHHHHhcCCC-----------------------CCCHHHHHHHHHHhcCHHHH-HHHHHHHHH-HHHHHHHHHHh
Confidence            998887765433111                       23444555555665543322 233333333 35556667765


Q ss_pred             hcC
Q 017640          363 RHN  365 (368)
Q Consensus       363 ~~g  365 (368)
                      .++
T Consensus       304 ~~~  306 (374)
T PRK02610        304 LPQ  306 (374)
T ss_pred             CCC
Confidence            544

>PRK07550 hypothetical protein; Provisional

Probab=99.93  E-value=7.4e-24  Score=201.40  Aligned_cols=262  Identities=16%  Similarity=0.141  Sum_probs=184.8

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----CCC-CCCcEEEeCCHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS-DSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~-~~~~v~~t~g~t  139 (368)
                      .+.+.|..+... .+++.+.+++.+.+...    ....+..    .....++|+++++++    |.. .+++|++|+|++
T Consensus        29 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Y~~----~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~  100 (386)
T PRK07550         29 GPLIDLSQAVPGYPPPPELLRALAEAAADP----AAHLYGP----VEGLPELREAYAAHYSRLYGAAISPEQVHITSGCN  100 (386)
T ss_pred             CCeEEeCCCCCCCCCCHHHHHHHHHHHhCc----CCcCCCC----CCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcH
Confidence            567888888866 45777878777665321    1111111    112235555555555    432 235999999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC--CCCCCHHHHHHhcccCceEEEEccc
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVVIHHI  217 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~~~~~v~~~~~  217 (368)
                      +++..++.++    +++||+|++.+|.|....    ..++..|++++.++.++  ++.+|++++++++++++++|++++|
T Consensus       101 ~al~~~~~~l----~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~P  172 (386)
T PRK07550        101 QAFWAAMVTL----AGAGDEVILPLPWYFNHK----MWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITPRTRAIALVTP  172 (386)
T ss_pred             HHHHHHHHHh----cCCCCEEEEcCCCCcchH----HHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhcccCcEEEEeCC
Confidence            9999999988    789999999999887754    34456799999999974  3567999999999989999999999


Q ss_pred             ccccccccC---HHHHHHHHHhcCCEEEEecCCcCCc----ccccC---CC-CCccEEEecCcCcCCCCc--ceEEEEcc
Q 017640          218 SNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----MVVDV---QG-LDADFLVASSHKMCGPTG--IGFLFGKS  284 (368)
Q Consensus       218 ~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~----~~~~~---~~-~~~d~~~~s~~K~~g~~G--~G~l~~~~  284 (368)
                      +||||.++|   +++|.++|++||+++|+|++|+...    .+...   .. ....+++.|+||.+|.+|  +||+++++
T Consensus       173 ~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~~  252 (386)
T PRK07550        173 NNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVASP  252 (386)
T ss_pred             CCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCcccceEeeecCH
Confidence            999999998   7899999999999999999986321    11111   11 134678899999998677  99999998


Q ss_pred             cccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhc
Q 017640          285 DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERH  364 (368)
Q Consensus       285 ~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~  364 (368)
                      ++++.+.......                     ..+++..+..++..+++.+++. .+..+++..+..+++.+.|.++.
T Consensus       253 ~~~~~~~~~~~~~---------------------~~~~s~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~  310 (386)
T PRK07550        253 ARIAEIEKFMDTV---------------------AICAPRIGQIAVAWGLPNLADW-RAGNRAEIARRRDAFRAVFARLP  310 (386)
T ss_pred             HHHHHHHHHHhhc---------------------ccCCCcHHHHHHHHHhccHHHH-HHHHHHHHHHHHHHHHHHHHhCC
Confidence            8877766443211                     1134555555566666543332 45556677777778888887653


Q ss_pred             C
Q 017640          365 N  365 (368)
Q Consensus       365 g  365 (368)
                      +
T Consensus       311 ~  311 (386)
T PRK07550        311 G  311 (386)
T ss_pred             C
Confidence            3

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=99.93  E-value=4.4e-24  Score=203.95  Aligned_cols=264  Identities=15%  Similarity=0.166  Sum_probs=187.6

Q ss_pred             CCCeEEeccCCCC-----CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC-----CCCcEEE
Q 017640           65 SKKLVYLDNAATS-----QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-----DSGEIVF  134 (368)
Q Consensus        65 ~~~~i~l~~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-----~~~~v~~  134 (368)
                      +.+++.|+.+.++     ++++.+.+++.+.+.....+.        +.......++|+.++++++..     .+++|++
T Consensus        30 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~~~--------Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~  101 (403)
T TIGR01265        30 EKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFNG--------YAPSVGALAAREAVAEYLSSDLPGKLTADDVVL  101 (403)
T ss_pred             CCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCCCC--------CCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEE
Confidence            4678999999763     677889998888775321111        111233457899999999852     2348999


Q ss_pred             eCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC--CCCCCHHHHHHhcccCceEE
Q 017640          135 TKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLV  212 (368)
Q Consensus       135 t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~~~~~v  212 (368)
                      |+|+|+|+.+++.++    .++||+|++++|+|..    +...++..|++++.+++++  ++.+|++.+++++.++++++
T Consensus       102 t~G~t~al~~~~~~l----~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v  173 (403)
T TIGR01265       102 TSGCSQAIEICIEAL----ANPGANILVPRPGFPL----YDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEALADEKTVAI  173 (403)
T ss_pred             ecChHHHHHHHHHHh----CCCCCEEEEeCCCchh----HHHHHHHcCCEEEEecCCcccCCccCHHHHHHHhCcCccEE
Confidence            999999999999998    6899999999998765    4555677799999998753  46789999999998889999


Q ss_pred             EEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc------cc-cCCCCCccEEEecCcCcCCCCc--ceEE
Q 017640          213 VIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM------VV-DVQGLDADFLVASSHKMCGPTG--IGFL  280 (368)
Q Consensus       213 ~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~------~~-~~~~~~~d~~~~s~~K~~g~~G--~G~l  280 (368)
                      ++++++||||.+++   +++|.++|+++|+++|+|++|..-..      ++ .+......++++|+||.|+.+|  +||+
T Consensus       174 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~  253 (403)
T TIGR01265       174 VVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPGWRLGWI  253 (403)
T ss_pred             EEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccccCCCcceEEEE
Confidence            99999999999998   78999999999999999999873211      11 1222234688899999998888  9999


Q ss_pred             EEcc--c-----ccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Q 017640          281 FGKS--D-----LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWI  353 (368)
Q Consensus       281 ~~~~--~-----li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~  353 (368)
                      ++.+  +     +++.+.....                     . ...++...+.++..+++...+.-+++.+++..+..
T Consensus       254 v~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~  311 (403)
T TIGR01265       254 IIHDPHGIFRDTVLQGLKNLLQ---------------------R-ILGPATIVQGALPDILENTPQEFFDGKISVLKSNA  311 (403)
T ss_pred             EEeCchhhhHHHHHHHHHHHhh---------------------h-hcCCChHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence            8842  2     2222221110                     0 01234445555555554211112455666677777


Q ss_pred             HHHHHHHHhhcCC
Q 017640          354 ICSIIVIQERHNT  366 (368)
Q Consensus       354 ~~l~~~l~~~~g~  366 (368)
                      +++.+.|++++|+
T Consensus       312 ~~l~~~L~~~~~~  324 (403)
T TIGR01265       312 ELCYEELKDIPGL  324 (403)
T ss_pred             HHHHHHHhcCCCc
Confidence            7888888766553

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=99.93  E-value=4.8e-24  Score=201.38  Aligned_cols=252  Identities=12%  Similarity=0.077  Sum_probs=185.0

Q ss_pred             CeEEeccCCCC-CCcHHHHHHHHHHHHHh----hccCCCCcchhhHHHHHHHHHHHHHHHHHc----C--CCCCCcEEEe
Q 017640           67 KLVYLDNAATS-QKPIAVLKALQNYYEAY----NSNVHRGIHFLSAKATDEYELARKKVAAFI----N--ASDSGEIVFT  135 (368)
Q Consensus        67 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~--~~~~~~v~~t  135 (368)
                      ..+.|+.+.+. ++|+.+.+++.+.+...    ..+|.           .....+|+++++++    |  .++ ++|++|
T Consensus        27 ~~i~l~~~~~~~~~~~~~~~al~~~l~~~~~~~~~Y~~-----------~g~~~lr~aia~~~~~~~~~~~~~-~~I~it   94 (368)
T PRK03317         27 VPVRLNTNENPYPPSPALVADIAEAVAEAAAGLNRYPD-----------RDAVALRADLAAYLTAQTGVGLTV-ENVWAA   94 (368)
T ss_pred             ceeEecCCCCCCCCCHHHHHHHHHHHhhhhhhhccCCC-----------CchHHHHHHHHHHhhhhccCCCCh-hhEEEC
Confidence            45788888876 68889999998876532    11221           12346888888888    4  334 499999


Q ss_pred             CCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc-CceEEEE
Q 017640          136 KNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVI  214 (368)
Q Consensus       136 ~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~  214 (368)
                      +|+++++.+++.++    +++||.|++..|.|+.    +...++..|.+++.++.++++.+|++++++++.. ++++|++
T Consensus        95 ~G~~~~l~~~~~~~----~~~gd~v~v~~P~y~~----~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~i~l  166 (368)
T PRK03317         95 NGSNEILQQLLQAF----GGPGRTALGFVPSYSM----HPIIARGTHTEWVEGPRAADFTLDVDAAVAAIAEHRPDVVFL  166 (368)
T ss_pred             CCHHHHHHHHHHHh----cCCCCEEEEeCCChHH----HHHHHHhcCCeeEEcccCCCCCCCHHHHHHHHhccCCCEEEE
Confidence            99999999999998    8999999999997766    4556667799998888777788999999999864 7789999


Q ss_pred             cccccccccccCHHHHHHHHHhcCCEEEEecCCcCCc----c-cccC-CCCCccEEEecCcCcCCCCc--ceEEEEcccc
Q 017640          215 HHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPH----M-VVDV-QGLDADFLVASSHKMCGPTG--IGFLFGKSDL  286 (368)
Q Consensus       215 ~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~----~-~~~~-~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~l  286 (368)
                      ++++||||.+++.+++.++++.+++++|+|++|+.-.    . .... ......+++.|++|.+|.+|  +||+++++++
T Consensus       167 ~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~~~~  246 (368)
T PRK03317        167 TSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAAPAV  246 (368)
T ss_pred             eCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhhhccchhhhhhhhCCHHH
Confidence            9999999999999999999999999999999998321    1 0111 11234578889999999778  8999999998


Q ss_pred             cccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          287 LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       287 i~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      ++.+......                       ...+..+..++..+++....  .....++..+..+++.+.|++.
T Consensus       247 ~~~l~~~~~~-----------------------~~~s~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~  298 (368)
T PRK03317        247 VDALRLVRLP-----------------------YHLSAVTQAAARAALRHADE--LLASVAALRAERDRVVAWLREL  298 (368)
T ss_pred             HHHHHhcCCC-----------------------CCCCHHHHHHHHHHhhCHHH--HHHHHHHHHHHHHHHHHHHHHC
Confidence            8776633211                       13344555556666654332  2233344556666677777654

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.93  E-value=6.4e-25  Score=200.73  Aligned_cols=221  Identities=19%  Similarity=0.189  Sum_probs=175.4

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      ...++++++.+|+++|++  +.+++++|+|+++..++.++    +++||+|++..++|.++...+.    ..|+++++++
T Consensus        58 ~g~i~~~~~~~A~~~ga~--~~~~~~~Gst~a~~~~l~al----~~~gd~Vlv~~~~h~s~~~~~~----~~g~~~~~v~  127 (294)
T cd00615          58 TGPIKEAQELAARAFGAK--HTFFLVNGTSSSNKAVILAV----CGPGDKILIDRNCHKSVINGLV----LSGAVPVYLK  127 (294)
T ss_pred             ChHHHHHHHHHHHHhCCC--CEEEEcCcHHHHHHHHHHHc----CCCCCEEEEeCCchHHHHHHHH----HCCCEEEEec
Confidence            345778999999999986  25566999999999999988    8999999999999999765543    4599999988


Q ss_pred             CCCC------CCCCHHHHHHhcc--cCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCC-----cccccC
Q 017640          190 LNDD------ESPDLDKLKEMLS--RKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVP-----HMVVDV  256 (368)
Q Consensus       190 ~~~~------~~~d~~~l~~~l~--~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~-----~~~~~~  256 (368)
                      .+.+      +.+|++.++++++  +++++|+++++ |++|.++|+++|.++|+++|+++++|++|+..     ..+.+.
T Consensus       128 ~~~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~  206 (294)
T cd00615         128 PERNPYYGIAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSA  206 (294)
T ss_pred             CccCcccCcCCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcch
Confidence            7633      3789999999996  46799999988 78999999999999999999999999999852     233334


Q ss_pred             CCCCccEEEecCcCcCC-CCcceEEEEccccccc--CCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 017640          257 QGLDADFLVASSHKMCG-PTGIGFLFGKSDLLSA--MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAA  333 (368)
Q Consensus       257 ~~~~~d~~~~s~~K~~g-~~G~G~l~~~~~li~~--l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~a  333 (368)
                      ...+.|+++.|+||+++ +.++|++.++++..+.  +...                    ...++.++|+++.++++..+
T Consensus       207 ~~~~~div~~S~hK~l~g~~~~~~l~~~~~~~~~~~~~~~--------------------~~~~~ttsps~~~~asl~~a  266 (294)
T cd00615         207 AMAGADIVVQSTHKTLPALTQGSMIHVKGDLVNPDRVNEA--------------------LNLHQSTSPSYLILASLDVA  266 (294)
T ss_pred             hhcCCcEEEEchhcccchHhHHHHHHhCCCcCCHHHHHHH--------------------HHHHCCCCcHHHHHHHHHHH
Confidence            44589999999999765 4557888777663221  1111                    13456779999999999999


Q ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHHHHh
Q 017640          334 IDYLSTIGMQKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       334 l~~~~~~g~~~i~~~~~~l~~~l~~~l~~  362 (368)
                      ++++...|.+ ..++..+++++++++|.+
T Consensus       267 ~~~~~~~g~~-~~~~~~~~~~~~r~~l~~  294 (294)
T cd00615         267 RAMMALEGKE-LVEELIELALYARQEINK  294 (294)
T ss_pred             HHHHHHHhHH-HHHHHHHHHHHHHHHHhC
Confidence            9999877755 567788888888887753

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PLN02452 phosphoserine transaminase

Probab=99.93  E-value=4.7e-24  Score=198.78  Aligned_cols=274  Identities=17%  Similarity=0.191  Sum_probs=209.7

Q ss_pred             eEEeccCCCCCCcHHHHHHHHHHHHHhhccCC--CCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEe-CCHHHHHHH
Q 017640           68 LVYLDNAATSQKPIAVLKALQNYYEAYNSNVH--RGIHFLSAKATDEYELARKKVAAFINASDSGEIVFT-KNATEAINL  144 (368)
Q Consensus        68 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t-~g~t~a~~~  144 (368)
                      .+|+-..++..+|+.|++++++.+..+.....  ......+..+.+.++++++.|.++++.+++++|+|. .|+|.++.+
T Consensus         7 ~~~~f~pGP~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea   86 (365)
T PLN02452          7 RVFNFSAGPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAA   86 (365)
T ss_pred             ceEeeeCCCCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHH
Confidence            35666777888999999999987765432211  113344566789999999999999999765666555 888999999


Q ss_pred             HHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCC---CCCHHHHHHhcccCceEEEEccccccc
Q 017640          145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDE---SPDLDKLKEMLSRKTKLVVIHHISNML  221 (368)
Q Consensus       145 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~---~~d~~~l~~~l~~~~~~v~~~~~~n~t  221 (368)
                      ++..+    +.+|+++++...+..+-.  +...++++|...+.....+..   .+++++++  ..++.+.|.+++..+.|
T Consensus        87 ~~~nl----~~~~~~~l~~~~G~fg~r--~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~hnETst  158 (365)
T PLN02452         87 IPLNL----CKPGDKADFVVTGSWSKK--AAKEAKKYCKTNVIASGKDEKYTKIPSVSEWE--LTPDAKFVHICANETIH  158 (365)
T ss_pred             HHHhc----CCCCCeEEEEECCHHHHH--HHHHHHHhCCCcEEEecCCCCCCCCCChHHcC--CCCCCcEEEECCCCCCC
Confidence            99988    889999888887777754  667778888744444222222   45666653  24568999999999999


Q ss_pred             ccc-cCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCcce
Q 017640          222 ASI-LPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMI  300 (368)
Q Consensus       222 G~~-~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~  300 (368)
                      |+. .|++++.      ++++++|++++++..++|++++++|+  +|.||.+||+|+|++++++++++++.+....    
T Consensus       159 Gv~~~~~~~i~------~~~lvVDa~Ss~g~~pidv~~~~v~~--~saqK~lGP~Gl~~v~vr~~~l~~~~~~~~~----  226 (365)
T PLN02452        159 GVEFKDYPDVG------NVPLVADMSSNFLSKPVDVSKYGVIY--AGAQKNVGPSGVTIVIIRKDLIGNARPITPG----  226 (365)
T ss_pred             cEecCcccccC------CCeEEEECCccccCcccCHHHcCEEE--EecccccCCCCeEEEEEcHHHHhhcccCCCc----
Confidence            996 6677664      28999999999999999999887755  6999999999999999999999877643221    


Q ss_pred             eecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          301 SDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~-g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                         ..++.....  .....+|||+..++++..+++++.+. |++.+.+|.+++++++++.|.+.+|+
T Consensus       227 ---~~~~~~~~~--~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~  288 (365)
T PLN02452        227 ---MLDYKIHAE--NDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGF  288 (365)
T ss_pred             ---hhhHHHHHh--cCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence               111111001  11234699999999999999999987 89999999999999999999988765

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.93  E-value=7.9e-24  Score=199.30  Aligned_cols=253  Identities=16%  Similarity=0.099  Sum_probs=184.4

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL  144 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~  144 (368)
                      .+++.|+.+... .+|+.+.+++.+.+.....++..          . ..++|+++|++++.+++ +|++|+|+++++.+
T Consensus        22 ~~~i~l~~~~n~~~~~~~~~~a~~~~~~~~~~Y~~~----------~-~~~Lr~aia~~~~v~~~-~I~it~G~~~~i~~   89 (360)
T PRK07392         22 DAILDFSASINPLGPPESVIAAIQSALSALRHYPDP----------D-YRELRLALAQHHQLPPE-WILPGNGAAELLTW   89 (360)
T ss_pred             ccEEEeCCcCCCCCCCHHHHHHHHHHHHHhhcCCCc----------C-HHHHHHHHHHHhCcChh-hEEECCCHHHHHHH
Confidence            457899988665 67889999988776653323221          1 23799999999998775 99999999999999


Q ss_pred             HHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCC-----CCHHHHHHhcccCceEEEEccccc
Q 017640          145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDES-----PDLDKLKEMLSRKTKLVVIHHISN  219 (368)
Q Consensus       145 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~-----~d~~~l~~~l~~~~~~v~~~~~~n  219 (368)
                      ++.++    . +||.|++.+|.|+.    +...++..|++++.++.++++.     .+++.+++.. ++++++++++|+|
T Consensus        90 ~~~~l----~-~g~~vlv~~P~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~nP~N  159 (360)
T PRK07392         90 AGREL----A-QLRAVYLITPAFGD----YRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQL-TPNDGLLLNNPHN  159 (360)
T ss_pred             HHHHh----C-CCCeEEEECCCcHH----HHHHHHHcCCeEEEEecccccCCcccccCHHHHHHhc-cCCCEEEEeCCCC
Confidence            99876    3 57899999997766    5666677799999999975532     4677776654 4679999999999


Q ss_pred             ccccccCHHHHHHHHHhcCCEEEEecCCcCCcc-----c-cc-CCCCCccEEEecCcCcCCCCc--ceEEEEcccccccC
Q 017640          220 MLASILPIEEIVHWSHDVGAKVLVDACQSVPHM-----V-VD-VQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAM  290 (368)
Q Consensus       220 ~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~-----~-~~-~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l  290 (368)
                      |||.+++.++|.++++++++ +|+|++|..-..     + +. +......+++.|+||.||.+|  +||+++++++++.+
T Consensus       160 PTG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~~~~~~~  238 (360)
T PRK07392        160 PTGKLWSREAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAHPDRLQRW  238 (360)
T ss_pred             CCCCCcCHHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCCHHHHHHH
Confidence            99999999999999999985 666999873211     1 11 122245689999999999888  99999999887765


Q ss_pred             CCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          291 PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       291 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      .....                       ..+.+.....++..+++...  -.+.++++.++..+++.+.|++++|+
T Consensus       239 ~~~~~-----------------------~~~~s~~~q~~~~~~l~~~~--~~~~~~~~~~~~r~~l~~~L~~~~~~  289 (360)
T PRK07392        239 QQWRD-----------------------PWPVNGLAAAAAIAALADRD--FQQQTWAWLPPAREALFQGLASLPGL  289 (360)
T ss_pred             HhhCC-----------------------CCCCCHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            43221                       12455566666666654211  13344556677777888888776553

>PRK06107 aspartate aminotransferase; Provisional

Probab=99.93  E-value=7.8e-24  Score=202.15  Aligned_cols=266  Identities=15%  Similarity=0.110  Sum_probs=187.9

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC-CCCcEEEeCCHHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-DSGEIVFTKNATEAIN  143 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~~v~~t~g~t~a~~  143 (368)
                      ++++.|+.+... +.++.+.+++.+.+....     ..+....+..+..+.+.+.+++.+|.+ .+++|++|+|+++|+.
T Consensus        33 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~-----~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~  107 (402)
T PRK06107         33 RSIVDLTVGEPDFDTPDHIKQAAVAAIERGE-----TKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIF  107 (402)
T ss_pred             CCEEEcCCCCCCCCCCHHHHHHHHHHHHcCC-----CCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHH
Confidence            567889888877 457788888887775310     011111122444555666666666764 3358999999999999


Q ss_pred             HHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC--CCCCCHHHHHHhcccCceEEEEccccccc
Q 017640          144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVVIHHISNML  221 (368)
Q Consensus       144 ~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~~~~~v~~~~~~n~t  221 (368)
                      .++.++    +++||.|++++|.|+...    ......+.+++.++.+.  ++.+|++++++++.++++++++++++|||
T Consensus       108 ~~~~~~----~~~gd~vl~~~p~y~~y~----~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPt  179 (402)
T PRK06107        108 LALMAT----LEAGDEVIIPAPYWVSYP----DMVLANDGTPVIVACPEEQGFKLTPEALEAAITPRTRWLILNAPSNPT  179 (402)
T ss_pred             HHHHHh----cCCCCEEEEecCCCcCHH----HHHHHcCCEEEEecCCcccCCCCCHHHHHhhcCcCceEEEEECCCCCC
Confidence            999887    899999999999887643    23344577888888753  35689999999998889999999999999


Q ss_pred             ccccC---HHHHHHHHHhc-CCEEEEecCCcCCc------ccc-cC--CCCCccEEEecCcCcCCCCc--ceEEEEcccc
Q 017640          222 ASILP---IEEIVHWSHDV-GAKVLVDACQSVPH------MVV-DV--QGLDADFLVASSHKMCGPTG--IGFLFGKSDL  286 (368)
Q Consensus       222 G~~~~---l~~i~~l~~~~-g~~li~D~a~~~~~------~~~-~~--~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~l  286 (368)
                      |.++|   +++|+++|++| |+++|+|++|+.-.      ..+ .+  ...+..++++|+||.||.+|  +||+++++++
T Consensus       180 G~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~~~~~~~  259 (402)
T PRK06107        180 GAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAGPADL  259 (402)
T ss_pred             CcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccceeeeecCHHH
Confidence            99998   56778889998 99999999986211      111 11  11246788899999999888  8999999998


Q ss_pred             cccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          287 LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       287 i~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      ++.+.....-                     ...+++.....++..+++--.. -++..+++.++..+++.+.|+++.|.
T Consensus       260 ~~~~~~~~~~---------------------~~~~~s~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~L~~~~g~  317 (402)
T PRK06107        260 IAAINKLQSQ---------------------SSSCPSSISQAAAAAALNGDQS-FVTESVAVYKQRRDYALALLNAIPGL  317 (402)
T ss_pred             HHHHHHHHHh---------------------cccCCChHHHHHHHHHhcCChH-HHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            8876644321                     1124555566666666542111 24555666777777888888765453

>PRK07908 hypothetical protein; Provisional

Probab=99.93  E-value=9.9e-24  Score=197.84  Aligned_cols=250  Identities=15%  Similarity=0.125  Sum_probs=180.6

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL  144 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~  144 (368)
                      ++++.|+.+.+. .+|+.+++++.+.+.....++.          .....++|++++++++.+++ +|++|+|+++++.+
T Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~----------~~g~~~lr~aia~~~~~~~~-~I~it~Ga~~al~~   90 (349)
T PRK07908         22 PGLLDFAVNVRHDTPPEWLRERLAARLGDLAAYPS----------TEDERRARAAVAARHGRTPD-EVLLLAGAAEGFAL   90 (349)
T ss_pred             CCeEEecCCCCCCCCCHHHHHHHHHHhhHhhcCCC----------ccchHHHHHHHHHHhCcChh-hEEECCCHHHHHHH
Confidence            678899998876 5788899999888765433332          12344799999999998764 99999999999998


Q ss_pred             HHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccc
Q 017640          145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI  224 (368)
Q Consensus       145 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~  224 (368)
                      ++. +     ++| .+++..|+|..    +...++..|++++.++.++++.+|++.+    .++++++++++++||||.+
T Consensus        91 ~~~-l-----~~~-~viv~~P~y~~----~~~~~~~~G~~i~~v~~~~~~~~d~~~l----~~~~~~i~l~np~NPTG~~  155 (349)
T PRK07908         91 LAR-L-----RPR-RAAVVHPSFTE----PEAALRAAGIPVHRVVLDPPFRLDPAAV----PDDADLVVIGNPTNPTSVL  155 (349)
T ss_pred             HHh-c-----CCC-eEEEeCCCChH----HHHHHHHcCCEEEeeccCcccCcChhHh----ccCCCEEEEcCCCCCCCCC
Confidence            887 4     354 56667887665    3445677899999999987778888754    4578999999999999999


Q ss_pred             cCHHHHHHHHHhcCCEEEEecCCcC--CcccccCC--CCCccEEEecCcCcCCCCc--ceEEEEcccccccCCCcccCCc
Q 017640          225 LPIEEIVHWSHDVGAKVLVDACQSV--PHMVVDVQ--GLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGE  298 (368)
Q Consensus       225 ~~l~~i~~l~~~~g~~li~D~a~~~--~~~~~~~~--~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~~~~~g~~  298 (368)
                      +|.++|.++|++ +.++|+|++|+.  ...+.++.  ..+..+++.|+||.+|++|  +||+++++++++.+.+....+ 
T Consensus       156 ~~~~~l~~l~~~-~~~iIvDe~y~~~~~~~~~~l~~~~~~~~i~i~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~~-  233 (349)
T PRK07908        156 HPAEQLLALRRP-GRILVVDEAFADAVPGEPESLAGDDLPGVLVLRSLTKTWSLAGLRVGYALGAPDVLARLTRGRAHW-  233 (349)
T ss_pred             cCHHHHHHHHhc-CCEEEEECcchhhccCCccccccccCCCEEEEeecccccCCccceeeeeecCHHHHHHHHhcCCCC-
Confidence            999999999964 778889999862  11112221  2234577889999999888  799999999888776543211 


Q ss_pred             ceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          299 MISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                                            +.+...+.++...++-....-++.++++..+..+++.+.|.++ |+
T Consensus       234 ----------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~  278 (349)
T PRK07908        234 ----------------------PVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAV-GA  278 (349)
T ss_pred             ----------------------CccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhC-Cc
Confidence                                  2233333333333320000124567788888888888888875 43

>PRK07777 aminotransferase; Validated

Probab=99.93  E-value=1e-23  Score=200.53  Aligned_cols=259  Identities=20%  Similarity=0.170  Sum_probs=180.6

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHH----HcCCC--CCCcEEEeCCH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAA----FINAS--DSGEIVFTKNA  138 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~----~~~~~--~~~~v~~t~g~  138 (368)
                      .+.+.|..+... ..++.+.+++.+.+...   .  ..+...    ....++|+.+++    .+|.+  ++++|++|+|+
T Consensus        24 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~---~--~~Y~~~----~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~   94 (387)
T PRK07777         24 TGAVNLGQGFPDEDGPPEMLEAAQEAIAGG---V--NQYPPG----PGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGA   94 (387)
T ss_pred             CCeEEccCCCCCCCCCHHHHHHHHHHHhcC---C--CCCCCC----CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCc
Confidence            456888887765 34566677766655421   0  111111    112345555555    45664  22379999999


Q ss_pred             HHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC---CCCCHHHHHHhcccCceEEEEc
Q 017640          139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD---ESPDLDKLKEMLSRKTKLVVIH  215 (368)
Q Consensus       139 t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~---~~~d~~~l~~~l~~~~~~v~~~  215 (368)
                      ++|+..++.++    +++||+|++..|.|+..    ...++..|.+++.++.+++   +.+|+++|++++.+++++|+++
T Consensus        95 ~~al~~~~~~~----~~~gd~vli~~p~y~~~----~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~  166 (387)
T PRK07777         95 TEAIAAAVLGL----VEPGDEVLLIEPYYDSY----AAVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVTPRTRALIVN  166 (387)
T ss_pred             HHHHHHHHHHh----cCCCCEEEEeCCCchhh----HHHHHHCCCEEEEeecCCccCCCcCCHHHHHHhcCcccEEEEEc
Confidence            99999999887    78999999999988774    4455667999999998754   5689999999998889999999


Q ss_pred             ccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCc------cccc-CCC-CCccEEEecCcCcCCCCc--ceEEEE
Q 017640          216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH------MVVD-VQG-LDADFLVASSHKMCGPTG--IGFLFG  282 (368)
Q Consensus       216 ~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~------~~~~-~~~-~~~d~~~~s~~K~~g~~G--~G~l~~  282 (368)
                      +++||||.+++   +++|.++|++|++++|+|++|....      .++. +.. .+.++++.|+||.||.+|  +||+++
T Consensus       167 ~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~  246 (387)
T PRK07777        167 SPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGWACG  246 (387)
T ss_pred             CCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcCceeEEEec
Confidence            99999999998   7788999999999999999986311      1221 121 347899999999999778  899999


Q ss_pred             cccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHh
Q 017640          283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       283 ~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~  362 (368)
                      ++++++.+.......                  .+   +.+.+...++..+++.... -++.++++.++..+++.+.|.+
T Consensus       247 ~~~l~~~~~~~~~~~------------------~~---~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~  304 (387)
T PRK07777        247 PAPLIAAVRAAKQYL------------------TY---VGGAPFQPAVAHALDHEDA-WVAALRDSLQAKRDRLAAGLAE  304 (387)
T ss_pred             CHHHHHHHHHHHhhc------------------cc---CCCCHHHHHHHHHHhCCcH-HHHHHHHHHHHHHHHHHHHHHh
Confidence            998877665332100                  00   1222233334444432222 2456677788888888888877


Q ss_pred             h
Q 017640          363 R  363 (368)
Q Consensus       363 ~  363 (368)
                      .
T Consensus       305 ~  305 (387)
T PRK07777        305 A  305 (387)
T ss_pred             C
Confidence            4

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.93  E-value=1.2e-23  Score=200.14  Aligned_cols=259  Identities=17%  Similarity=0.146  Sum_probs=182.9

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----CCC--CCCcEEEeCCH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS--DSGEIVFTKNA  138 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~--~~~~v~~t~g~  138 (368)
                      ++++.|..+... ..++.+.+++.+.+.... .    .+..    .....++|+++++++    +..  ++++|++|+|+
T Consensus        30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~-~----~Y~~----~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~  100 (391)
T PRK07309         30 PGILKLTLGEPDFTTPDHVKEAAKRAIDANQ-S----HYTG----MAGLLELRQAAADFVKEKYNLDYAPENEILVTIGA  100 (391)
T ss_pred             CCeEEcCCCCCCCCCCHHHHHHHHHHHhcCC-C----CCCC----CCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCh
Confidence            467889888777 456777888877665311 0    0100    111335666666665    332  23589999999


Q ss_pred             HHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC-CCCCHHHHHHhccc---CceEEEE
Q 017640          139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSR---KTKLVVI  214 (368)
Q Consensus       139 t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~l~~---~~~~v~~  214 (368)
                      ++++.+++.++    +++||+|++.+|.|...    ...++..|.+++.++.+++ +.+|++.++++++.   +++++++
T Consensus       101 ~~al~~~~~~~----~~~gd~vl~~~p~y~~~----~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~i~l  172 (391)
T PRK07309        101 TEALSASLTAI----LEPGDKVLLPAPAYPGY----EPIVNLVGAEIVEIDTTENDFVLTPEMLEKAILEQGDKLKAVIL  172 (391)
T ss_pred             HHHHHHHHHHh----cCCCCEEEEeCCCCcch----HHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhhccCCCeEEEEE
Confidence            99999999988    88999999999988884    4455667999999998654 57899999999864   5799999


Q ss_pred             cccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc----cccCC--CCCccEEEecCcCcCCCCc--ceEEEEc
Q 017640          215 HHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VVDVQ--GLDADFLVASSHKMCGPTG--IGFLFGK  283 (368)
Q Consensus       215 ~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~----~~~~~--~~~~d~~~~s~~K~~g~~G--~G~l~~~  283 (368)
                      ++|+||||.+++   +++|.++|++||+++|+|++|..-..    ..++.  ..+..+++.|+||.||.+|  +||++.+
T Consensus       173 ~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRvG~~v~~  252 (391)
T PRK07309        173 NYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSKSHAMTGWRIGLIFAP  252 (391)
T ss_pred             ECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEEEEecChhhccCccceeEEEEeC
Confidence            999999999998   78889999999999999999873221    11111  1245689999999999888  9999999


Q ss_pred             ccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          284 SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       284 ~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +++++.+.....                     +...+++...+.++..+++..... ....+++..+..+++.+.|.+.
T Consensus       253 ~~~~~~~~~~~~---------------------~~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~  310 (391)
T PRK07309        253 AEFTAQLIKSHQ---------------------YLVTAATTMAQFAAVEALTNGKDD-ALPMKKEYIKRRDYIIEKMTDL  310 (391)
T ss_pred             HHHHHHHHHHHh---------------------hcccCCChHHHHHHHHHHhCChhH-HHHHHHHHHHHHHHHHHHHHHC
Confidence            998877663321                     111134444555555555421111 2345566666777777777664

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=99.93  E-value=1.1e-23  Score=198.22  Aligned_cols=207  Identities=16%  Similarity=0.194  Sum_probs=160.4

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL  144 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~  144 (368)
                      .+++.|+.+... .+++.+.+++.+.+.....++..           ...++|++++++++.+++ +|++|+|+++++.+
T Consensus        30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~-----------~~~~lr~~ia~~~~~~~~-~I~it~G~~~al~~   97 (357)
T PRK14809         30 DDLVKLSSNENPHGPSPAAVEAIREAAERVHSYPKA-----------SHADLTAALADRWDVSPE-QVWLANGGDGALDY   97 (357)
T ss_pred             cceeEecCCCCCCCCCHHHHHHHHHHHhhhhcCCCC-----------CHHHHHHHHHHHhCCCcc-eEEECCCHHHHHHH
Confidence            568999998776 67788889888776654333321           133799999999998775 99999999999999


Q ss_pred             HHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC--CCCCCHHHHHHhcccCceEEEEcccccccc
Q 017640          145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVVIHHISNMLA  222 (368)
Q Consensus       145 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG  222 (368)
                      ++.++    +++||.|++.+|.|+.    +...++..|.+++.++++.  ++.+|++.+++.. +++++|++++++||||
T Consensus        98 ~~~~~----~~~gd~V~v~~P~y~~----~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~k~i~l~~p~NPTG  168 (357)
T PRK14809         98 LARAM----LDPGDTVLVPDPGFAY----YGMSARYHHGEVREYPVSKADDFEQTADTVLDAY-DGERIVYLTSPHNPTG  168 (357)
T ss_pred             HHHHh----cCCCCEEEEeCCChHH----HHHHHHHcCCeEEEEecccCcCCCcCHHHHHHhh-cCCcEEEEeCCCCCCC
Confidence            99988    8999999999997764    3444566789999998863  3667888887765 4679999999999999


Q ss_pred             cccCHHHHHHHHHhc--CCEEEEecCCcCCcc---cc-cCCCCCccEEEecCcCcCCCCc--ceEEEEcccccccCCCc
Q 017640          223 SILPIEEIVHWSHDV--GAKVLVDACQSVPHM---VV-DVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPF  293 (368)
Q Consensus       223 ~~~~l~~i~~l~~~~--g~~li~D~a~~~~~~---~~-~~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~~~  293 (368)
                      .++|.+++.++++..  +++||+|++|..-..   .+ .....+..+++.|+||.||.+|  +||+++++++++.+...
T Consensus       169 ~~~s~~~~~~l~~~~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~  247 (357)
T PRK14809        169 SEIPLDEVEALAERTDEETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAYGLAGLRLGYAVVPEEWADAYARV  247 (357)
T ss_pred             cCCCHHHHHHHHHhCccCcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHhcCcchhheeeecCHHHHHHHHHh
Confidence            999977777776643  789999999873211   11 1122345688999999999888  99999999988776543

>PLN02368 alanine transaminase

Probab=99.93  E-value=7.6e-24  Score=201.06  Aligned_cols=225  Identities=16%  Similarity=0.148  Sum_probs=166.3

Q ss_pred             HHHHHHHHHHHc----CCC-CCCcEEEeCCHHHHHHHHHHHccCCCC-CCCCEEEEcCCCCcccHHHHHHHHHHcCCEEE
Q 017640          113 YELARKKVAAFI----NAS-DSGEIVFTKNATEAINLVAYSWGLSNL-KSGDEVILTVAEHHSAIVPWQLVAQKTGANLK  186 (368)
Q Consensus       113 ~~~~r~~la~~~----~~~-~~~~v~~t~g~t~a~~~~~~~~~~~~~-~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~  186 (368)
                      ..++|+++++++    |.+ .+++|++|+|+++++..++.++    + ++||+|++++|.|+.    +...++..|++++
T Consensus       109 ~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l----~~~pGd~Vli~~P~Y~~----y~~~~~~~g~~~v  180 (407)
T PLN02368        109 LPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAV----IRGEKDGVLVPVPQYPL----YSATISLLGGTLV  180 (407)
T ss_pred             CHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHH----cCCCCCEEEEeCCCCcc----HHHHHHHcCCEEE
Confidence            346777777766    543 3359999999999999999988    6 799999999998887    4455566799999


Q ss_pred             EEeCCCC--CCCCHHHHHHhccc------CceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCc----
Q 017640          187 FLNLNDD--ESPDLDKLKEMLSR------KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----  251 (368)
Q Consensus       187 ~v~~~~~--~~~d~~~l~~~l~~------~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~----  251 (368)
                      .++++++  +.+|++.|++++++      +++++++++|+||||.+++   +++|+++|++||++||+|++|..-.    
T Consensus       181 ~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~  260 (407)
T PLN02368        181 PYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDE  260 (407)
T ss_pred             EEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC
Confidence            9998753  78899999999864      6899999999999999999   6788889999999999999987321    


Q ss_pred             ---ccc-c----CC----CCCccEEEecCcCcC-CCCc--ceEEEE---cccccccCCCcccCCcceeecccCCCCCCCC
Q 017640          252 ---MVV-D----VQ----GLDADFLVASSHKMC-GPTG--IGFLFG---KSDLLSAMPPFLGGGEMISDVFLDHSTFADP  313 (368)
Q Consensus       252 ---~~~-~----~~----~~~~d~~~~s~~K~~-g~~G--~G~l~~---~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~  313 (368)
                         .++ .    +.    ..+..+++.|+||.| |.+|  +||+++   ++++++.+.....                  
T Consensus       261 ~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~~------------------  322 (407)
T PLN02368        261 RPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVAS------------------  322 (407)
T ss_pred             CCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHHhc------------------
Confidence               110 1    11    122568889999987 8888  999985   7777776654321                  


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHH-------HH--hCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          314 PSRFEAGTPAIGEAIGLGAAIDYL-------ST--IGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       314 ~~~~~~gt~~~~~~~a~~~al~~~-------~~--~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                         . ..+.+...+.++..+++--       ..  .....+.+..++.++++.+.|.+++|+.
T Consensus       323 ---~-~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~  381 (407)
T PLN02368        323 ---I-ALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVV  381 (407)
T ss_pred             ---c-cCCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Confidence               0 1135555666666666411       00  0134566777888889999999887753

>PRK07683 aminotransferase A; Validated

Probab=99.93  E-value=1.6e-23  Score=199.07  Aligned_cols=259  Identities=19%  Similarity=0.166  Sum_probs=185.4

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----CCC-CCC-cEEEeCCH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS-DSG-EIVFTKNA  138 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~-~~~-~v~~t~g~  138 (368)
                      ++.+.|+.+... +.++.+.+++.+.+....     ..+.    ......++|+.+++++    |.. .++ +|++|+|+
T Consensus        28 ~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~-----~~Y~----~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~   98 (387)
T PRK07683         28 DNLISLTIGQPDFPTPSHVKEAAKRAITENY-----TSYT----HNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGA   98 (387)
T ss_pred             CCeEEecCCCCCCCCCHHHHHHHHHHHhcCC-----CCCC----CCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCh
Confidence            567889988766 456788888888776321     0111    0122346777777776    442 234 89999999


Q ss_pred             HHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC-CCCCCHHHHHHhcccCceEEEEccc
Q 017640          139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHHI  217 (368)
Q Consensus       139 t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~  217 (368)
                      ++|+.+++.++    +++||.|++++|.|+..    ...++..|+++++++.++ ++.+|.+++++.+.+++++++++++
T Consensus        99 ~~al~~~~~~l----~~~gd~Vl~~~p~y~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~i~~p  170 (387)
T PRK07683         99 SEAIDIAFRTI----LEPGTEVILPAPIYPGY----EPIIRLCGAKPVFIDTRSTGFRLTAEALENAITEKTRCVVLPYP  170 (387)
T ss_pred             HHHHHHHHHHh----CCCCCEEEEcCCCccch----HHHHHHcCCEEEEeecCcccCCCCHHHHHHhcCcCceEEEEeCC
Confidence            99999999988    78999999999988774    444556799999999874 4667889999999888999999999


Q ss_pred             ccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc-----cc-cC-CCCCccEEEecCcCcCCCCc--ceEEEEccc
Q 017640          218 SNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM-----VV-DV-QGLDADFLVASSHKMCGPTG--IGFLFGKSD  285 (368)
Q Consensus       218 ~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~-----~~-~~-~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~  285 (368)
                      +||||.+++   +++|.++|+++|+++|+|++|.....     ++ .. +..+..+++.|+||.+|.+|  +||++++++
T Consensus       171 ~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~~~~~  250 (387)
T PRK07683        171 SNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFAPSY  250 (387)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccCccceeEEEEcCHH
Confidence            999999998   78889999999999999999884321     11 11 12245789999999999778  999999998


Q ss_pred             ccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          286 LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       286 li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +++.+.....                     +.....+.....++...++.... -.+.++++..+..+++.+.|.+.
T Consensus       251 l~~~~~~~~~---------------------~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~  306 (387)
T PRK07683        251 LAKHILKVHQ---------------------YNVTCASSISQYAALEALTAGKD-DAKMMRHQYKKRRDYVYNRLISM  306 (387)
T ss_pred             HHHHHHHHHH---------------------hccCCCChHHHHHHHHHHhCChH-HHHHHHHHHHHHHHHHHHHHHHc
Confidence            8877653321                     11112233333444334432111 24566777778888888888764

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=99.93  E-value=1e-23  Score=204.44  Aligned_cols=300  Identities=17%  Similarity=0.169  Sum_probs=207.2

Q ss_pred             hhhhcCCCCcccccccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC
Q 017640           48 GHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS  127 (368)
Q Consensus        48 ~~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~  127 (368)
                      .+.++...++.....+  ++  |+++...+ .|..+. .+......++.|.  ..+..++...++...+.++++++++..
T Consensus        74 ~~~~~~~~~~~~~~~h--P~--f~g~~~~~-~p~~~~-~l~~l~~~lN~n~--~~~~~spa~t~lE~~v~~wl~~l~~~~  145 (522)
T TIGR03799        74 QFLLDKLVAHSVHTAS--PS--FIGHMTSA-LPYFML-PLSKLMVALNQNL--VKIETSKAFTPLERQVLGMMHHLVYGQ  145 (522)
T ss_pred             HHHHHHHHcCCCCCCC--CC--eEEeccCC-CchHHH-HHHHHHHHhcCCc--ceeecCcchHHHHHHHHHHHHHHhccC
Confidence            3334444555544443  43  45554443 222221 1223333444443  345567778889999999999998521


Q ss_pred             ------------CCCcEEEeCCHHHHHHHHHHHccCCCCC----------------------CCCEEEEcCCCCcccHHH
Q 017640          128 ------------DSGEIVFTKNATEAINLVAYSWGLSNLK----------------------SGDEVILTVAEHHSAIVP  173 (368)
Q Consensus       128 ------------~~~~v~~t~g~t~a~~~~~~~~~~~~~~----------------------~gd~vl~~~~~~~s~~~~  173 (368)
                                  .....++|+|+|+|+..++.+.+...+.                      ++..|++++.+|+|+.  
T Consensus       146 ~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~v~~S~~~H~S~~--  223 (522)
T TIGR03799       146 DDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYDGLAILVSERGHYSLG--  223 (522)
T ss_pred             cccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccCCceEEEECCCchHHHH--
Confidence                        1124689999999999998875432111                      2457899999999954  


Q ss_pred             HHHHHHHcCC---EEEEEeCCCCCCCCHHHHHHhcc----cCceEEEE--cccccccccccCHHHHHHHHHhcCCEEEEe
Q 017640          174 WQLVAQKTGA---NLKFLNLNDDESPDLDKLKEMLS----RKTKLVVI--HHISNMLASILPIEEIVHWSHDVGAKVLVD  244 (368)
Q Consensus       174 ~~~~~~~~g~---~v~~v~~~~~~~~d~~~l~~~l~----~~~~~v~~--~~~~n~tG~~~~l~~i~~l~~~~g~~li~D  244 (368)
                        +.++..|.   +++.||+++++.+|+++|+++|+    ++++.+++  +..++.||.+.|+++|+++|+++|+++++|
T Consensus       224 --kaa~~lglg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl~eIa~i~~~~g~~lHVD  301 (522)
T TIGR03799       224 --KAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLDEMADIAQELGCHFHVD  301 (522)
T ss_pred             --HHHHHcCCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCHHHHHHHHHHcCCeEEEE
Confidence              44556676   79999999999999999999986    34444444  466789999999999999999999999999


Q ss_pred             cCCcCCccccc-----CCCC-CccEEEecCcC-cCCCCcceEEEEccc-ccccCCCcccCCcceeecccCCCCCCCCCCC
Q 017640          245 ACQSVPHMVVD-----VQGL-DADFLVASSHK-MCGPTGIGFLFGKSD-LLSAMPPFLGGGEMISDVFLDHSTFADPPSR  316 (368)
Q Consensus       245 ~a~~~~~~~~~-----~~~~-~~d~~~~s~~K-~~g~~G~G~l~~~~~-li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~  316 (368)
                      ++|+.+....+     +... ++|+++.|+|| +++|.|+|++++++. +.+.+.+.. .+     .... ........+
T Consensus       302 aA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~llvr~~~~~~~~~~~~-~Y-----l~~~-~~~d~~~~~  374 (522)
T TIGR03799       302 AAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFKDPALMSAIEHHA-EY-----ILRK-GSKDLGSHT  374 (522)
T ss_pred             chhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcccEEEEEeCHHHHHHhccCc-ch-----hcCC-CCCccccce
Confidence            99997665433     3333 68999999999 678999999999864 434443310 00     0000 000111245


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 017640          317 FEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTTL  368 (368)
Q Consensus       317 ~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t~  368 (368)
                      ++. +.+..+ +.+..+++++...|++.+.++..++++++.+.|.+.+++++
T Consensus       375 leg-sR~~~a-l~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~~el  424 (522)
T TIGR03799       375 LEG-SRPGMA-MLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFEL  424 (522)
T ss_pred             eec-CcchHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEE
Confidence            664 444444 46899999999999999999999999999999999887653

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>PRK09265 aminotransferase AlaT; Validated

Probab=99.93  E-value=2.3e-23  Score=199.15  Aligned_cols=200  Identities=17%  Similarity=0.230  Sum_probs=153.9

Q ss_pred             CCCeEEeccCCCC----CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc------CCCCCCcEEE
Q 017640           65 SKKLVYLDNAATS----QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI------NASDSGEIVF  134 (368)
Q Consensus        65 ~~~~i~l~~~~~~----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~------~~~~~~~v~~  134 (368)
                      +++++.|+.+...    ++++.+.+++.+.+.....++.          .....++|+++++++      ++++ ++|++
T Consensus        32 ~~~~i~l~~g~p~~~~~~~~~~i~~~~~~~~~~~~~Y~~----------~~G~~~lr~~ia~~~~~~~~~~~~~-~~i~~  100 (404)
T PRK09265         32 GHKILKLNIGNPAPFGFEAPDEILRDVIRNLPTAQGYSD----------SKGLFSARKAIMQYYQQKGIPDVDV-DDIYI  100 (404)
T ss_pred             CCCeEEecCCCCCcCCCCCCHHHHHHHHHHhhcCCCCCC----------CCCcHHHHHHHHHHHhccCCCCCCc-ccEEE
Confidence            3678999987653    3677888888776543222211          122337888899988      5555 49999


Q ss_pred             eCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC--CCCCCHHHHHHhcccCceEE
Q 017640          135 TKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLV  212 (368)
Q Consensus       135 t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~~~~~v  212 (368)
                      |+|+++++.+++.++    +++||+|++++|+|+..    ...++..|++++.++.+.  ++.+|++++++++.+++++|
T Consensus       101 t~G~~~~l~~~~~~~----~~~gd~Vlv~~p~y~~~----~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v  172 (404)
T PRK09265        101 GNGVSELIVMAMQAL----LNNGDEVLVPAPDYPLW----TAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKITPRTKAI  172 (404)
T ss_pred             eCChHHHHHHHHHHh----CCCCCEEEEeCCCCcCh----HHHHHHcCCEEEEEecccccCCCCCHHHHHHhccccceEE
Confidence            999999999999988    89999999999999874    444555688998888763  46789999999998889999


Q ss_pred             EEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCc----c--cc-cCCCCCccEEEecCcCcCCCCc--ceEE
Q 017640          213 VIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----M--VV-DVQGLDADFLVASSHKMCGPTG--IGFL  280 (368)
Q Consensus       213 ~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~----~--~~-~~~~~~~d~~~~s~~K~~g~~G--~G~l  280 (368)
                      ++++|+||||.++|   +++|.++|++||+++|+|++|..-.    .  ++ .+......+++.|++|.||.+|  +||+
T Consensus       173 ~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~  252 (404)
T PRK09265        173 VIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFRVGWM  252 (404)
T ss_pred             EEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchhhccCcccceEEE
Confidence            99999999999999   8899999999999999999986211    1  11 1111123567889999999888  8999


Q ss_pred             EEc
Q 017640          281 FGK  283 (368)
Q Consensus       281 ~~~  283 (368)
                      +.+
T Consensus       253 v~~  255 (404)
T PRK09265        253 VLS  255 (404)
T ss_pred             EEe
Confidence            963

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=99.93  E-value=8.2e-24  Score=205.64  Aligned_cols=209  Identities=17%  Similarity=0.195  Sum_probs=151.6

Q ss_pred             CCeEEeccCCCCCCcHHHHHHHHHHHHH-------hhccCCCCcchhhHHHHHHHHHHHHHHHHHcC--------CCCCC
Q 017640           66 KKLVYLDNAATSQKPIAVLKALQNYYEA-------YNSNVHRGIHFLSAKATDEYELARKKVAAFIN--------ASDSG  130 (368)
Q Consensus        66 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~--------~~~~~  130 (368)
                      .++|.|+.+.+..+.+.+.+.+.+....       ....++...    +.......++|+++|++++        .++ +
T Consensus        46 ~g~i~l~~aEN~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----y~~~~G~~~LR~aiA~~l~~~~g~~v~v~p-e  120 (496)
T PLN02376         46 HGIIQMGLAENQLCLDLIKDWVKENPEASICTLEGIHQFSDIAN----FQDYHGLKKFRQAIAHFMGKARGGKVTFDP-E  120 (496)
T ss_pred             CceEEeecchhhhhHHHHHHHHHhCchhhccccccccccchhhc----cCCCCCcHHHHHHHHHHHHHHhCCCCcCCh-h
Confidence            6899999999887767666666654332       111111111    1112233467777777765        344 4


Q ss_pred             cEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC--CCCCCCHHHHHHhcc--
Q 017640          131 EIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDESPDLDKLKEMLS--  206 (368)
Q Consensus       131 ~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~l~--  206 (368)
                      +|++|+|+++++.+++.++    ++|||.|++++|.|+.....+.   ...|++++.|+++  .++.+|++.+++++.  
T Consensus       121 ~Ivit~Ga~~al~~l~~~l----~~pGD~Vlv~~P~Y~~~~~~~~---~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a  193 (496)
T PLN02376        121 RVVMSGGATGANETIMFCL----ADPGDVFLIPSPYYAAFDRDLR---WRTGVEIIPVPCSSSDNFKLTVDAADWAYKKA  193 (496)
T ss_pred             hEEEccchHHHHHHHHHHh----CCCCCEEEECCCCccchHHHHH---hhCCCEEEEEeCCCCccCcCCHHHHHHHHHHH
Confidence            9999999999999999998    8999999999999888543222   2469999999996  347889999976542  


Q ss_pred             ----cCceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc------cc-cC-CC-------CCccEE
Q 017640          207 ----RKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM------VV-DV-QG-------LDADFL  264 (368)
Q Consensus       207 ----~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~------~~-~~-~~-------~~~d~~  264 (368)
                          .++++|++++|+||||.+++   +++|+++|++||++||+|++|+.-..      ++ .+ ..       .+..++
T Consensus       194 ~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~v  273 (496)
T PLN02376        194 QESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHI  273 (496)
T ss_pred             HhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEE
Confidence                36899999999999999999   67888899999999999999984221      11 11 10       012356


Q ss_pred             EecCcCcCCCCc--ceEEEEcccc
Q 017640          265 VASSHKMCGPTG--IGFLFGKSDL  286 (368)
Q Consensus       265 ~~s~~K~~g~~G--~G~l~~~~~l  286 (368)
                      +.|+||.||.+|  +||++.+++.
T Consensus       274 v~S~SK~~glpGlRvG~li~~~~~  297 (496)
T PLN02376        274 VYSLSKDMGLPGFRVGIVYSFNDS  297 (496)
T ss_pred             EEeccccCCCCcceEEEEEECCHH
Confidence            789999999888  9999986543

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=99.92  E-value=8.6e-24  Score=204.69  Aligned_cols=267  Identities=15%  Similarity=0.117  Sum_probs=178.8

Q ss_pred             CCeEEeccCCCCCCcHHHHHHHHHHHHHhh-ccCC--CCcchhhHHHHHHHHHHHHHHHHHcC--------CCCCCcEEE
Q 017640           66 KKLVYLDNAATSQKPIAVLKALQNYYEAYN-SNVH--RGIHFLSAKATDEYELARKKVAAFIN--------ASDSGEIVF  134 (368)
Q Consensus        66 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~r~~la~~~~--------~~~~~~v~~  134 (368)
                      .++|.|+.+.+..+.+.+.+.+.+...... ....  .......+.......++|+++|++++        +++ ++|++
T Consensus        38 ~g~i~L~~~En~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~-~~Iii  116 (468)
T PLN02450         38 SGIIQMGLAENQLSFDLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDP-NKLVL  116 (468)
T ss_pred             CeeEEeehhHhHhhHHHHHHHHHhCchhhhcccccccchhhhhcCCCCCChHHHHHHHHHHHHHhhCCCCCcCh-HHeEE
Confidence            689999999988777666666654322100 0000  00000001111223467777777774        234 58999


Q ss_pred             eCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC--CCCCCCHHHHHHhccc-----
Q 017640          135 TKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDESPDLDKLKEMLSR-----  207 (368)
Q Consensus       135 t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~l~~-----  207 (368)
                      |+|+++++.+++.++    +++||.|++++|.|+.....+.   ...|++++.|+++  .++.+|++.+++++.+     
T Consensus       117 t~Ga~~al~~l~~~l----~~pGd~Vlv~~P~Y~~~~~~~~---~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~  189 (468)
T PLN02450        117 TAGATSANETLMFCL----AEPGDAFLLPTPYYPGFDRDLK---WRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLN  189 (468)
T ss_pred             ccChHHHHHHHHHHh----CCCCCEEEECCCCCCchHHHHh---hcCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcC
Confidence            999999999999998    8999999999998888543222   1469999999986  3467788999988754     


Q ss_pred             -CceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc------c-ccC---------CCCCccEEEec
Q 017640          208 -KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM------V-VDV---------QGLDADFLVAS  267 (368)
Q Consensus       208 -~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~------~-~~~---------~~~~~d~~~~s  267 (368)
                       ++++|++++|+||||.+++   +++|.++|++||++||+|++|+.-..      + +..         +..+..+++.|
T Consensus       190 ~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S  269 (468)
T PLN02450        190 LKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYS  269 (468)
T ss_pred             CCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEe
Confidence             7899999999999999999   67888899999999999999983111      1 111         12346789999


Q ss_pred             CcCcCCCCc--ceEEEEcccc-cccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH--HhCH
Q 017640          268 SHKMCGPTG--IGFLFGKSDL-LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS--TIGM  342 (368)
Q Consensus       268 ~~K~~g~~G--~G~l~~~~~l-i~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~--~~g~  342 (368)
                      +||.||.+|  +||++++++. ++.+....                     .+  +..+.+...++..+++.-.  +.-+
T Consensus       270 ~SK~~~l~GlRiG~li~~~~~l~~~~~~~~---------------------~~--~~~s~~~Q~a~~~~L~~~~~~~~~l  326 (468)
T PLN02450        270 LSKDLGLPGFRVGAIYSNDEMVVSAATKMS---------------------SF--GLVSSQTQYLLSALLSDKKFTKNYL  326 (468)
T ss_pred             ccccCCCCCccEEEEEECCHHHHHHHHHHh---------------------hc--CCCCHHHHHHHHHHhCCchhHHHHH
Confidence            999999888  9999998654 33332211                     01  1234455555555554211  1113


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh
Q 017640          343 QKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       343 ~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +..+++..+..+.+.+.|.+.
T Consensus       327 ~~~~~~l~~rr~~l~~~L~~~  347 (468)
T PLN02450        327 EENQKRLKQRQKKLVSGLEAA  347 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc
Confidence            445666677777777777765

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=99.92  E-value=1.2e-23  Score=186.83  Aligned_cols=269  Identities=15%  Similarity=0.158  Sum_probs=199.1

Q ss_pred             CCeEEeccCCCC-----CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC-----CCCcEEEe
Q 017640           66 KKLVYLDNAATS-----QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-----DSGEIVFT  135 (368)
Q Consensus        66 ~~~i~l~~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-----~~~~v~~t  135 (368)
                      +.++.+.++.++     +..+.+.+|+.+.++.-..|.        |+....+...|+++|++++.+     .+++|++|
T Consensus        61 k~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk~N~--------Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~lt  132 (447)
T KOG0259|consen   61 KPILPLGHGDPSVYPCFRTSQEAEQAVVDALRSGKGNG--------YAPSVGILPARRAVAEYLNRDLPNKLTADDVVLT  132 (447)
T ss_pred             ceeccCCCCCCCccccccCCHHHHHHHHHHHhcCCCCC--------cCCccccHHHHHHHHHHhhcCCCCccCcCceEEe
Confidence            478999998765     457788888888887543332        223445558999999997765     33599999


Q ss_pred             CCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC--CCCCCHHHHHHhcccCceEEE
Q 017640          136 KNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVV  213 (368)
Q Consensus       136 ~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~~~~~v~  213 (368)
                      +|+++||++++.++    .+||..|+++.|+|+-    +...+...|.+++++.+-+  +|.+|++.+|+.++++|.+++
T Consensus       133 sGC~qAIe~~i~~L----A~p~aNILlPrPGfp~----Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~Aiv  204 (447)
T KOG0259|consen  133 SGCSQAIELAISSL----ANPGANILLPRPGFPL----YDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIV  204 (447)
T ss_pred             ccchHHHHHHHHHh----cCCCCceecCCCCCch----HHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEE
Confidence            99999999999999    7999999999998887    4556677799999999864  599999999999999999999


Q ss_pred             EcccccccccccC---HHHHHHHHHhcCCEEEEecCCcC---Cc---ccc-cCCCCCccEEEecCcCcCCCCc--ceEEE
Q 017640          214 IHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSV---PH---MVV-DVQGLDADFLVASSHKMCGPTG--IGFLF  281 (368)
Q Consensus       214 ~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~---~~---~~~-~~~~~~~d~~~~s~~K~~g~~G--~G~l~  281 (368)
                      +.+|+||.|.+++   +++|+++|+++|+.||.||+|.-   |.   .|+ .+...-+.+.++|.+|-+=.+|  +||++
T Consensus       205 viNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW~VPGWRlGWi~  284 (447)
T KOG0259|consen  205 VINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVPGWRLGWIA  284 (447)
T ss_pred             EeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeecccccccccCCceeeeEE
Confidence            9999999999999   89999999999999999999872   22   222 2333457889999999444445  99999


Q ss_pred             EcccccccCCCcc--cCCcceeecccCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 017640          282 GKSDLLSAMPPFL--GGGEMISDVFLDHSTFADPPSRFE-AGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSII  358 (368)
Q Consensus       282 ~~~~li~~l~~~~--~g~~~~~~~~~~~~~~~~~~~~~~-~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~  358 (368)
                      ..+..- .++...  .|--                .-++ ...|+..-+.|+-.-|+--.+.-......-++..++...+
T Consensus       285 ~hD~~g-vf~~~~~~q~~~----------------~~~~~~~~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na~l~y~  347 (447)
T KOG0259|consen  285 LHDPRG-VFRDTKVVQGIK----------------NFLDIIPGPATIIQGALPDILEKTPEEFFDKKLSFLKSNADLCYS  347 (447)
T ss_pred             Eecccc-cccchHHHHHHH----------------HHHhccCCccHhHHHHhHHHHHhChHHHHHHHHHHHHhhHHHHHH
Confidence            876421 111000  0000                0000 1134444445555555433333455666778899999999


Q ss_pred             HHHhhcCCC
Q 017640          359 VIQERHNTT  367 (368)
Q Consensus       359 ~l~~~~g~t  367 (368)
                      +|+++|+++
T Consensus       348 ~Lk~IP~l~  356 (447)
T KOG0259|consen  348 RLKDIPCLT  356 (447)
T ss_pred             HHhcCCCcc
Confidence            999999976

>PRK08636 aspartate aminotransferase; Provisional

Probab=99.92  E-value=2.1e-23  Score=199.21  Aligned_cols=260  Identities=17%  Similarity=0.182  Sum_probs=175.0

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----CCC-CCC-cEEEeCCH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS-DSG-EIVFTKNA  138 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~-~~~-~v~~t~g~  138 (368)
                      ++++.|..+... +.|+.+.+++.+.......        .++.......++|+.+++++    |.+ .++ +|++|+|+
T Consensus        33 ~~~~~l~~g~p~~~~~~~~~~~~~~~~~~~~~--------~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~  104 (403)
T PRK08636         33 EDIIDFSMGNPDGPTPQHIIDKLCESAQKPKT--------HGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGS  104 (403)
T ss_pred             CCEEEcCCcCCCCCCCHHHHHHHHHHhcCCcc--------CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCCh
Confidence            567788877655 3466677776665432100        01111222335666666665    643 223 69999999


Q ss_pred             HHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC--CCCCCCHHH----HHHhcc---cCc
Q 017640          139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDESPDLDK----LKEMLS---RKT  209 (368)
Q Consensus       139 t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~----l~~~l~---~~~  209 (368)
                      ++++.+++.++    +++||.|++.+|+|+..    ...++..|++++.++++  +++.+|++.    ++++++   .++
T Consensus       105 ~~al~~~~~~l----~~~gd~Vlv~~P~y~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~  176 (403)
T PRK08636        105 KEGYVHLVQAI----TNPGDVAIVPDPAYPIH----SQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKP  176 (403)
T ss_pred             HHHHHHHHHHh----CCCCCEEEEcCCCCcch----HHHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCc
Confidence            99999999998    89999999999988874    44455679999999985  346788775    455553   468


Q ss_pred             eEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc------cc-cCCCC-CccEEEecCcCcCCCCc--
Q 017640          210 KLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM------VV-DVQGL-DADFLVASSHKMCGPTG--  276 (368)
Q Consensus       210 ~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~------~~-~~~~~-~~d~~~~s~~K~~g~~G--  276 (368)
                      +++++++|+||||.+++   +++|.++|++|+++||+|++|+.-..      ++ .++.. +..++++|+||.||.+|  
T Consensus       177 ~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR  256 (403)
T PRK08636        177 KYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAGWR  256 (403)
T ss_pred             eEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCCccce
Confidence            99999999999999999   67888999999999999999873211      11 22221 34466889999999888  


Q ss_pred             ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 017640          277 IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICS  356 (368)
Q Consensus       277 ~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l  356 (368)
                      +||++.++++++.+......                    ...++....+. ++..+++.... -++.+++...+..+.+
T Consensus       257 iG~iv~~~~li~~~~~~~~~--------------------~~~~~~~~~q~-~~~~~~~~~~~-~~~~~~~~~~~~~~~l  314 (403)
T PRK08636        257 VGFVVGNKKLVGALKKIKSW--------------------LDYGMFTPIQV-AATIALDGDQS-CVEEIRETYRKRRDVL  314 (403)
T ss_pred             eeeeeCCHHHHHHHHHHHHH--------------------hcccCChHHHH-HHHHHHhCcHH-HHHHHHHHHHHHHHHH
Confidence            99999999988776643210                    00123333333 33334432112 2556666677777777


Q ss_pred             HHHHHhh
Q 017640          357 IIVIQER  363 (368)
Q Consensus       357 ~~~l~~~  363 (368)
                      .+.|.+.
T Consensus       315 ~~~L~~~  321 (403)
T PRK08636        315 IESFANA  321 (403)
T ss_pred             HHHHHHC
Confidence            7777663

>PLN02822 serine palmitoyltransferase

Probab=99.92  E-value=3.1e-23  Score=201.01  Aligned_cols=263  Identities=18%  Similarity=0.177  Sum_probs=192.6

Q ss_pred             CCCeEEeccCCC-C-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHH
Q 017640           65 SKKLVYLDNAAT-S-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI  142 (368)
Q Consensus        65 ~~~~i~l~~~~~-~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~  142 (368)
                      |+++++|..+.+ + ..++.+++++.+.++.+.....  .....++..+...+++++++++++.+  +.|++++|.+ ++
T Consensus       108 G~~~id~~s~~~lgl~~~~~i~ea~~~al~~~G~g~~--g~r~~yg~~~~~~~Lee~La~~~~~~--~~i~~s~G~~-a~  182 (481)
T PLN02822        108 GKDVVNFASANYLGLIGNEKIKESCTSALEKYGVGSC--GPRGFYGTIDVHLDCETKIAKFLGTP--DSILYSYGLS-TI  182 (481)
T ss_pred             CceEEEeECCCcCCCCCCHHHHHHHHHHHHHhCCCCc--ccCccccCHHHHHHHHHHHHHHhCCC--CEEEECCHHH-HH
Confidence            356677765543 3 4689999999999988643221  11112344677889999999999976  4788888876 67


Q ss_pred             HHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcc---------cCc-eEE
Q 017640          143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS---------RKT-KLV  212 (368)
Q Consensus       143 ~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~---------~~~-~~v  212 (368)
                      ..++.++    .++||.|++....|.+...    .+...+.+++.++.+     |.+.++..++         +++ ++|
T Consensus       183 ~sai~a~----~~~gd~Ii~d~~~H~s~~~----~~~ls~~~~~~~~~n-----d~~~l~~~l~~~~~~~~~~~~~~~~I  249 (481)
T PLN02822        183 FSVIPAF----CKKGDIIVADEGVHWGIQN----GLYLSRSTIVYFKHN-----DMESLRNTLEKLTAENKRKKKLRRYI  249 (481)
T ss_pred             HHHHHHh----CCCCCEEEEeCCccHHHHH----HHHHcCCeEEEECCC-----CHHHHHHHHHHHhhhhcccCCCcEEE
Confidence            8888888    8999999988887766533    344558899999876     4555544442         234 799


Q ss_pred             EEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCccc---------ccCCCCCccEEEecCcCcCCCCcceEEEEc
Q 017640          213 VIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMV---------VDVQGLDADFLVASSHKMCGPTGIGFLFGK  283 (368)
Q Consensus       213 ~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~---------~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~  283 (368)
                      +++.+++++|.+.|+++|.++|++||+++|+|++|++|...         +++....+|++++|++|.+|..| |+++++
T Consensus       250 vve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg~~G-G~i~g~  328 (481)
T PLN02822        250 VVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALATEG-GFCTGS  328 (481)
T ss_pred             EEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhhhCC-eEEEcC
Confidence            99999999999999999999999999999999999966531         12222358999999999999887 999999


Q ss_pred             ccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          284 SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       284 ~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +++++.++....+                  ..| +++.+.....++.++++.++.  .+.+.++.+++.+++.+.|.++
T Consensus       329 ~~ii~~~~~~~~~------------------~~f-sa~lPp~~~~Aa~~aL~~l~~--~~~~~~~l~~~~~~l~~~L~~~  387 (481)
T PLN02822        329 ARVVDHQRLSSSG------------------YVF-SASLPPYLASAAITAIDVLED--NPSVLAKLKENIALLHKGLSDI  387 (481)
T ss_pred             HHHHHHHHhcCCc------------------eee-ccccCHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHhc
Confidence            9988776532211                  122 223334444555568877664  3678889999999999999987


Q ss_pred             cCCC
Q 017640          364 HNTT  367 (368)
Q Consensus       364 ~g~t  367 (368)
                      .|++
T Consensus       388 ~g~~  391 (481)
T PLN02822        388 PGLS  391 (481)
T ss_pred             CCcc
Confidence            6643

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.92  E-value=3.9e-23  Score=194.57  Aligned_cols=259  Identities=18%  Similarity=0.198  Sum_probs=188.5

Q ss_pred             CCCeEEeccCCC-C-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHH
Q 017640           65 SKKLVYLDNAAT-S-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI  142 (368)
Q Consensus        65 ~~~~i~l~~~~~-~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~  142 (368)
                      |..++.|..+.+ + +.++.+.+++.+++..+.. .. +.+....+..+...++++.++++++.+  +.|++++| ++++
T Consensus        15 g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~-~~-~~~~~~~g~~~~~~~l~~~la~~~~~~--~~i~~~~G-~~~~   89 (360)
T TIGR00858        15 GRRLLNFSSNDYLGLASHPEVIQAAQQGAEQYGA-GS-TASRLVSGNSPLHEELEEELAEWKGTE--AALLFSSG-YLAN   89 (360)
T ss_pred             CceEEecccCCcccCCCCHHHHHHHHHHHHhcCC-CC-CCcCcccCCcHHHHHHHHHHHHHhCCC--CEEEECch-HHHH
Confidence            356677777643 4 4678999999998876432 11 111111222455678999999999864  36677766 5566


Q ss_pred             HHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc----CceEEEEcccc
Q 017640          143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR----KTKLVVIHHIS  218 (368)
Q Consensus       143 ~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~----~~~~v~~~~~~  218 (368)
                      ..++.++    +++||+|++.++.|++....    ++..|++++.++.     +|++.|++.+++    ++++|++++++
T Consensus        90 ~~~l~~~----~~~gd~v~~~~~~~~~~~~~----~~~~g~~~~~~~~-----~d~~~l~~~~~~~~~~~~~~v~~~~~~  156 (360)
T TIGR00858        90 VGVISAL----VGKGDLILSDALNHASLIDG----CRLSGARVRRYRH-----NDVEHLERLLEKNRGERRKLIVTDGVF  156 (360)
T ss_pred             HHHHHHh----CCCCCEEEEEccccHHHHHH----HHhcCCceEEecC-----CCHHHHHHHHHHcccCCCeEEEEeCCc
Confidence            6677776    78999999999988875443    4556888888774     388999988864    46899999999


Q ss_pred             cccccccCHHHHHHHHHhcCCEEEEecCCcCCccccc---------CCCCCccEEEecCcCcCCCCcceEEEEccccccc
Q 017640          219 NMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD---------VQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSA  289 (368)
Q Consensus       219 n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~---------~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~  289 (368)
                      |+||...|+++|.++|+++|+++|+|++|+.+....+         +...+.+++++|+||.||+.| |++++++++++.
T Consensus       157 ~~~G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~g-G~~~~~~~~~~~  235 (360)
T TIGR00858       157 SMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSYG-AYVAGSQALIDY  235 (360)
T ss_pred             cCCCCCcCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhccC-cEEEcCHHHHHH
Confidence            9999999999999999999999999999986543211         222367899999999999987 899998888766


Q ss_pred             CCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          290 MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       290 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +.+....+                  .+ .++.+..+++++.++++++..  .+.++++..++.+++.+.|.+.
T Consensus       236 ~~~~~~~~------------------~~-~~~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~  288 (360)
T TIGR00858       236 LINRARTL------------------IF-STALPPAVAAAALAALELIQE--EPWRREKLLALIARLRAGLEAL  288 (360)
T ss_pred             HHHhCccc------------------ee-cCCCCHHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHHHHHHHHc
Confidence            54222100                  11 123445566777788887664  3677899999999999999875

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.92  E-value=3e-24  Score=203.29  Aligned_cols=169  Identities=25%  Similarity=0.379  Sum_probs=146.1

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      .+..+++++.+++++|.+   ++++++|+++|+..++.++    +++||+|+++++.|.+++..+...++..|+++++++
T Consensus        60 ~p~~~~le~~la~l~g~~---~~v~~ssG~~Ai~~al~al----~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd  132 (390)
T PRK08133         60 NPTVTMFQERLAALEGAE---ACVATASGMAAILAVVMAL----LQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVD  132 (390)
T ss_pred             ChHHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHH----hCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEEC
Confidence            456778999999999975   5788899999999999888    889999999999999988877777788899999998


Q ss_pred             CCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCc
Q 017640          190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH  269 (368)
Q Consensus       190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~  269 (368)
                      .+     |++++++++++++++|++++++||+|.+.|+++|.++|++||+++++|++++.+.....+ ..+.|+++.|++
T Consensus       133 ~~-----d~~~l~~~i~~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~~~~pl-~~g~Divv~S~s  206 (390)
T PRK08133        133 LT-----DLDAWRAAVRPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPALQQPL-KLGADVVIHSAT  206 (390)
T ss_pred             CC-----CHHHHHHhcCcCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCcccccCCch-hhCCcEEEeecc
Confidence            75     899999999999999999999999999999999999999999999999999766542222 347899999999


Q ss_pred             CcCCCCc---ceEEEEcccccccCC
Q 017640          270 KMCGPTG---IGFLFGKSDLLSAMP  291 (368)
Q Consensus       270 K~~g~~G---~G~l~~~~~li~~l~  291 (368)
                      |+++++|   .|+++.++++++.+.
T Consensus       207 K~~~g~g~~~GG~vv~~~~~~~~~~  231 (390)
T PRK08133        207 KYLDGQGRVLGGAVVGSKELMEEVF  231 (390)
T ss_pred             eeecCCcceEeEEEEcCHHHHHHHH
Confidence            9998877   377888877765544

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=99.92  E-value=1.1e-23  Score=202.50  Aligned_cols=218  Identities=17%  Similarity=0.200  Sum_probs=158.8

Q ss_pred             CCeEEeccCCCCCCcHHHHHHHHHHHHHhh--c-cCCCCcchhhHHHHHHHHHHHHHHHHHcCC------C-CCCcEEEe
Q 017640           66 KKLVYLDNAATSQKPIAVLKALQNYYEAYN--S-NVHRGIHFLSAKATDEYELARKKVAAFINA------S-DSGEIVFT  135 (368)
Q Consensus        66 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~r~~la~~~~~------~-~~~~v~~t  135 (368)
                      +++|.|+.+.+.++.+.+.+.+.+....-.  . ......+...+........+|+++|++++.      + .+++|++|
T Consensus        47 ~g~i~l~~aeN~l~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit  126 (447)
T PLN02607         47 SGVIQMGLAENQVSFDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARFDPDRIVLT  126 (447)
T ss_pred             CceEEEechhhhhhHHHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcCCCCCcCHHHeEEc
Confidence            789999999999999988888877643100  0 000000000011123344677777777652      1 23499999


Q ss_pred             CCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC--CCCCHHHHHHhccc------
Q 017640          136 KNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSR------  207 (368)
Q Consensus       136 ~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~l~~------  207 (368)
                      +|+++++.+++.++    +++||.|++++|.|++....+.   .+.|++++.|+++++  +.+|++++++++.+      
T Consensus       127 ~G~t~al~~l~~~l----~~pGD~Vlv~~P~Y~~f~~~~~---~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~  199 (447)
T PLN02607        127 AGATAANELLTFIL----ADPGDALLVPTPYYPGFDRDLR---WRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANI  199 (447)
T ss_pred             CChHHHHHHHHHHh----CCCCCEEEEcCCCCcchHHHHH---hcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCC
Confidence            99999999999988    8999999999999988643322   246899999998743  56899999998864      


Q ss_pred             CceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc------cc-cC----C--C-CCccEEEecCcC
Q 017640          208 KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM------VV-DV----Q--G-LDADFLVASSHK  270 (368)
Q Consensus       208 ~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~------~~-~~----~--~-~~~d~~~~s~~K  270 (368)
                      +++++++++|+||||.++|   +++|.++|++||+++|+|++|+....      ++ ++    .  . .+..+++.|+||
T Consensus       200 ~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK  279 (447)
T PLN02607        200 RVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSK  279 (447)
T ss_pred             CeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchh
Confidence            6899999999999999999   78899999999999999999984221      11 11    0  1 234578899999


Q ss_pred             cCCCCc--ceEEEE-cccccccC
Q 017640          271 MCGPTG--IGFLFG-KSDLLSAM  290 (368)
Q Consensus       271 ~~g~~G--~G~l~~-~~~li~~l  290 (368)
                      .||.+|  +|+++. ++++++.+
T Consensus       280 ~fg~~GlRvG~ivs~n~~l~~~~  302 (447)
T PLN02607        280 DLGLPGFRVGTIYSYNDKVVTTA  302 (447)
T ss_pred             cCCCCcceEEEEEEcCHHHHHHH
Confidence            999888  999998 44554443

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=99.92  E-value=3.6e-23  Score=194.25  Aligned_cols=252  Identities=11%  Similarity=0.139  Sum_probs=182.9

Q ss_pred             CeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHH
Q 017640           67 KLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV  145 (368)
Q Consensus        67 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~  145 (368)
                      +.+.|+.+... .+|+.+.+++.+.+.....+|..           ...++|++++++++.+++ +|++|+|+++++..+
T Consensus        20 ~~~~l~~~~~~~~~p~~~~~a~~~~~~~~~~Y~~~-----------~~~~lr~~ia~~~~~~~~-~i~it~Ga~~~l~~~   87 (354)
T PRK06358         20 MILDFSANINPLGVPESLKQAITENLDKLVEYPDP-----------DYLELRKRIASFEQLDLE-NVILGNGATELIFNI   87 (354)
T ss_pred             ceEEecCCCCCCCCCHHHHHHHHHHHHhhhcCCCc-----------cHHHHHHHHHHHhCCChh-hEEECCCHHHHHHHH
Confidence            46778777655 56888999988876544333321           134899999999998765 999999999999999


Q ss_pred             HHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC--CCCCHHHHHHhcccCceEEEEccccccccc
Q 017640          146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLVVIHHISNMLAS  223 (368)
Q Consensus       146 ~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~  223 (368)
                      +.++     .+ +.|++.+|.|+.    +...++..|++++.++.+.+  +.+| +++++.+.++++++++++|+||||.
T Consensus        88 ~~~~-----~~-~~v~i~~P~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~v~~~~P~NPtG~  156 (354)
T PRK06358         88 VKVT-----KP-KKVLILAPTFAE----YERALKAFDAEIEYAELTEETNFAAN-EIVLEEIKEEIDLVFLCNPNNPTGQ  156 (354)
T ss_pred             HHHh-----CC-CcEEEecCChHH----HHHHHHHcCCeeEEEeCccccCCCcc-HHHHHhhccCCCEEEEeCCCCCCCC
Confidence            9865     23 589999997765    55666778999999998743  5678 6666677778999999999999999


Q ss_pred             ccC---HHHHHHHHHhcCCEEEEecCCcCCcc-----c-c-cCCCCCccEEEecCcCcCCCCc--ceEEEEc-ccccccC
Q 017640          224 ILP---IEEIVHWSHDVGAKVLVDACQSVPHM-----V-V-DVQGLDADFLVASSHKMCGPTG--IGFLFGK-SDLLSAM  290 (368)
Q Consensus       224 ~~~---l~~i~~l~~~~g~~li~D~a~~~~~~-----~-~-~~~~~~~d~~~~s~~K~~g~~G--~G~l~~~-~~li~~l  290 (368)
                      +++   +++|.++|++||+++|+|++|..-..     + + .....+..+++.|+||.||.+|  +||++++ +.+++.+
T Consensus       157 ~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~~~~~~~  236 (354)
T PRK06358        157 LISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLAEKL  236 (354)
T ss_pred             ccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcchhheeeecCCHHHHHHH
Confidence            999   77888899999999999999862211     1 1 1222346688999999999888  9999985 5666655


Q ss_pred             CCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          291 PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       291 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      .....                       ..+.+.....++..+++.-.  -+++.++..++..+++.+.|++.+|+
T Consensus       237 ~~~~~-----------------------~~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~~~r~~l~~~L~~~~~~  287 (354)
T PRK06358        237 LQMRE-----------------------PWSINTFADLAGQTLLDDKE--YIKKTIQWIKEEKDFLYNGLSEFKGI  287 (354)
T ss_pred             HHhCC-----------------------CCcchHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            43321                       11345555555555554211  13556667777788888888776554

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.92  E-value=4.5e-23  Score=210.42  Aligned_cols=236  Identities=17%  Similarity=0.179  Sum_probs=190.0

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH----HHHHHHHHHccCCCCCC-CC----EEEEcCCCCcccHHHHHHH
Q 017640          107 AKATDEYELARKKVAAFINASDSGEIVFTKNAT----EAINLVAYSWGLSNLKS-GD----EVILTVAEHHSAIVPWQLV  177 (368)
Q Consensus       107 ~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t----~a~~~~~~~~~~~~~~~-gd----~vl~~~~~~~s~~~~~~~~  177 (368)
                      .+..+.+.++|+.+++++|.+   .|+|+++++    ++++++++++    .++ ||    +|+++..+|.++..++.. 
T Consensus       564 ~g~~~~~~~~r~~la~i~g~~---~v~f~pnaga~ge~a~~~vi~~~----~~~~Gd~~r~~vli~~~aH~sn~a~a~~-  635 (993)
T PLN02414        564 QGYQEMFEDLGDLLCEITGFD---SFSLQPNAGAAGEYAGLMVIRAY----HLSRGDHHRNVCIIPVSAHGTNPASAAM-  635 (993)
T ss_pred             HHHHHHHHHHHHHHHHHhCCC---eEEEcCCCcHHHHHHHHHHHHHH----HhccCCCCCCEEEeCCCcCccCHHHHHH-
Confidence            457889999999999999993   899999999    8999999998    444 77    899999999999866654 


Q ss_pred             HHHcCCEEEEEeCCCCCCCCHHHHHHhccc---CceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccc
Q 017640          178 AQKTGANLKFLNLNDDESPDLDKLKEMLSR---KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVV  254 (368)
Q Consensus       178 ~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~---~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~  254 (368)
                         .|.+++.|+.+++|.+|+++|++++++   ++++|++++++|.+|...|+++|+++||++|+++++|+++..+...+
T Consensus       636 ---~G~~vv~v~~d~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l  712 (993)
T PLN02414        636 ---CGMKIVVVGTDAKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGL  712 (993)
T ss_pred             ---CCCEEEEeccCCCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCc
Confidence               599999999999999999999999984   77999999999999999999999999999999999999999887433


Q ss_pred             -cCCCCCccEEEecCcC-cCC-----CCcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCC---CCCCCCH
Q 017640          255 -DVQGLDADFLVASSHK-MCG-----PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRF---EAGTPAI  324 (368)
Q Consensus       255 -~~~~~~~d~~~~s~~K-~~g-----~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~gt~~~  324 (368)
                       +..++++|++++|.|| +++     ++|+|++++++++...+.....+... .  +         ..|+   ..||.+.
T Consensus       713 ~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~-~--~---------~~r~~~s~iGt~~~  780 (993)
T PLN02414        713 TSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTG-G--I---------PRPEKTQPLGTISA  780 (993)
T ss_pred             CCccccCCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCC-C--c---------ccccCCCCcCCccc
Confidence             5567899999999999 443     44599999999776655533221110 0  0         0122   2467554


Q ss_pred             ---HHHHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHHhhcC
Q 017640          325 ---GEAIGLGAAIDYLSTIG---MQKIHAYEVKWIICSIIVIQERHN  365 (368)
Q Consensus       325 ---~~~~a~~~al~~~~~~g---~~~i~~~~~~l~~~l~~~l~~~~g  365 (368)
                         .+...+..++.++...|   ++.+.++...+++|+.++|.+..+
T Consensus       781 a~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~~~  827 (993)
T PLN02414        781 APWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGHYP  827 (993)
T ss_pred             hhhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence               44466777777777765   555589999999999999987544

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.92  E-value=2.1e-23  Score=198.00  Aligned_cols=252  Identities=15%  Similarity=0.164  Sum_probs=179.7

Q ss_pred             CeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHH
Q 017640           67 KLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVA  146 (368)
Q Consensus        67 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~  146 (368)
                      ..||++++...+.++.+.+.+..       ..  +.+.++....+...++++.+|+++|.+..   +++++++.++..++
T Consensus        30 ~pi~~~~~~~~~~~~~~~~~~~~-------~~--~~~~y~r~~~p~~~~Le~~lA~l~G~~~~---~~~~sG~~Ai~~~l   97 (398)
T PRK07504         30 EALFLTQGFVYDTAEAAEARFKG-------ED--PGFIYSRYSNPTVDMFEKRMCALEGAEDA---RATASGMAAVTAAI   97 (398)
T ss_pred             CCeECCCCccCCCHHHHHHHhcc-------Cc--CCceeecCCCchHHHHHHHHHHHhCCCee---eEecCHHHHHHHHH
Confidence            34999998877766665542211       00  11112222234566899999999999743   45678888998888


Q ss_pred             HHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccC
Q 017640          147 YSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILP  226 (368)
Q Consensus       147 ~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~  226 (368)
                      .++    +++||+|+++++.|.++...+...++..|++++.++.     +|++++++++++++++|++++++||||.+.|
T Consensus        98 ~~~----l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~-----~d~e~l~~ai~~~tklV~lesp~NptG~v~d  168 (398)
T PRK07504         98 LCQ----VKAGDHVVAARALFGSCRYVVETLLPRYGIESTLVDG-----LDLDNWEKAVRPNTKVFFLESPTNPTLEVID  168 (398)
T ss_pred             HHH----hCCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEECC-----CCHHHHHHhcCcCceEEEEECCCCCCcEecC
Confidence            776    8899999999999998877777777778999998863     4899999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCc---ceEEEEccccccc-CCCcccCCcceee
Q 017640          227 IEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTG---IGFLFGKSDLLSA-MPPFLGGGEMISD  302 (368)
Q Consensus       227 l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G---~G~l~~~~~li~~-l~~~~~g~~~~~~  302 (368)
                      +++|.++|+++|+++++|++|+.+... .....+.|+++.|++|+++++|   .|+++.+++.+.. ++......     
T Consensus       169 l~~I~~la~~~gi~lvvD~a~a~~~~~-~~~~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~~~-----  242 (398)
T PRK07504        169 IAAVAKIANQAGAKLVVDNVFATPLFQ-KPLELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHT-----  242 (398)
T ss_pred             HHHHHHHHHHcCCEEEEECCccccccC-CchhhCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHHHHh-----
Confidence            999999999999999999999876542 2224579999999999988766   4677777776542 22111100     


Q ss_pred             cccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          303 VFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       303 ~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                                      ..+++-.   .+..++.-++.  +....++..+++..+.++|++++++
T Consensus       243 ----------------g~~~s~~---~A~~~l~~L~t--l~~R~~~~~~na~~la~~L~~~p~v  285 (398)
T PRK07504        243 ----------------GPSLSPF---NAWTLLKGLET--LPVRVRQQTESAAAIADFLAGHPKV  285 (398)
T ss_pred             ----------------CCCCCHH---HHHHHHhccch--HHHHHHHHHHHHHHHHHHHHcCCCc
Confidence                            0122222   22233333333  3444455568888888899887764

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.92  E-value=3.7e-23  Score=198.55  Aligned_cols=268  Identities=16%  Similarity=0.136  Sum_probs=189.0

Q ss_pred             CCeEEeccCCCCCCcHHHHHHHHHHHHHhh--ccCCCCcchhhHHHHHHHHH-HHHHHHHHcCCCCCCcEEEeCCHHHHH
Q 017640           66 KKLVYLDNAATSQKPIAVLKALQNYYEAYN--SNVHRGIHFLSAKATDEYEL-ARKKVAAFINASDSGEIVFTKNATEAI  142 (368)
Q Consensus        66 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~r~~la~~~~~~~~~~v~~t~g~t~a~  142 (368)
                      .+.++|..+... +++.|++++...+...+  +++. +.+..+....+.+++ +++.+++++|.+.. .|++++ +|+|+
T Consensus        25 ~~~~~l~~~~n~-~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~~~la~~~g~~~~-~i~~~s-gt~al  100 (416)
T PRK00011         25 EEHIELIASENF-VSPAVMEAQGSVLTNKYAEGYPG-KRYYGGCEYVDVVEQLAIDRAKELFGAEYA-NVQPHS-GSQAN  100 (416)
T ss_pred             hcCeeeecccCc-CCHHHHHHHhchhhcccccCCCC-ccccccchHHHHHHHHHHHHHHHHhCCCce-eeecCC-chHHH
Confidence            455777776554 78999999877754322  2221 222223333444444 68899999999753 566655 57899


Q ss_pred             HHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHH-HHHHcCCEEEEEeCC-CCCCCCHHHHHHhccc-CceEEEEccccc
Q 017640          143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQL-VAQKTGANLKFLNLN-DDESPDLDKLKEMLSR-KTKLVVIHHISN  219 (368)
Q Consensus       143 ~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~-~~~~~g~~v~~v~~~-~~~~~d~~~l~~~l~~-~~~~v~~~~~~n  219 (368)
                      ..++.++    +++||+|++++++|.+....+.. .....|++++.++++ +++.+|++++++++++ ++++|++++.  
T Consensus       101 ~~~l~~l----~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~k~v~~~~~--  174 (416)
T PRK00011        101 AAVYFAL----LKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALEHKPKLIIAGAS--  174 (416)
T ss_pred             HHHHHHh----cCCCCEEEEeccccCCccccccccccccceeeEeecCcCcccCCcCHHHHHHHHHhcCCCEEEECCC--
Confidence            9999988    89999999999999875432211 112346788888887 3588999999999975 7898888754  


Q ss_pred             ccccccCHHHHHHHHHhcCCEEEEecCCcCCcc-----cccCCCCCccEEEecCcCcC-CCCcceEEEEc-ccccccCCC
Q 017640          220 MLASILPIEEIVHWSHDVGAKVLVDACQSVPHM-----VVDVQGLDADFLVASSHKMC-GPTGIGFLFGK-SDLLSAMPP  292 (368)
Q Consensus       220 ~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~-----~~~~~~~~~d~~~~s~~K~~-g~~G~G~l~~~-~~li~~l~~  292 (368)
                      .+|...|+++|.++|++||+++|+|++|+.|..     +..+.  +.|++++|+||++ |+. +|+++++ +++++.++.
T Consensus       175 ~~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~--~~di~~~S~~K~l~g~~-gg~i~~~~~~~~~~l~~  251 (416)
T PRK00011        175 AYSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP--HADVVTTTTHKTLRGPR-GGLILTNDEELAKKINS  251 (416)
T ss_pred             cCCCccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC--CCcEEEecCCcCCCCCC-ceEEEeCCHHHHHHHHH
Confidence            356778999999999999999999999986654     22333  6899999999966 455 4788775 577766653


Q ss_pred             cccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          293 FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       293 ~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      ....                    +..+++....++++..++......+++...++..++++++.+.|.+. |++
T Consensus       252 ~~~~--------------------~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  305 (416)
T PRK00011        252 AVFP--------------------GIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAER-GFR  305 (416)
T ss_pred             HhCc--------------------cccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCe
Confidence            3211                    11235556666666666655545567888899999999999999875 543

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.91  E-value=2.5e-23  Score=196.50  Aligned_cols=253  Identities=17%  Similarity=0.204  Sum_probs=174.9

Q ss_pred             EeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHH----HHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHH
Q 017640           70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAK----ATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV  145 (368)
Q Consensus        70 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~  145 (368)
                      |||.+...++.+.+.+++.++..+.   |+.+.+..+..    ..+..+++|+.+|+++|.+.  .+++++|. .++..+
T Consensus        14 YL~~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~--~l~~~sG~-~a~~~~   87 (370)
T PRK05937         14 FLGFSRSDTLVHEVEKRYRLYCRQF---PHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPE--AFIVPSGY-MANLGL   87 (370)
T ss_pred             ccCCCCCHHHHHHHHHHHHHhcccc---CCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCe--EEEECChH-HHHHHH
Confidence            4444444444444444444433222   33233344444    67889999999999999963  56666665 566665


Q ss_pred             HHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc------CceEEEEccccc
Q 017640          146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR------KTKLVVIHHISN  219 (368)
Q Consensus       146 ~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~~n  219 (368)
                      +..+    .++||.|++...+|.++...+...   .+.. +.++.     .|+++|++.+++      ++.+|++++++|
T Consensus        88 ~~~~----~~~~d~ii~d~~~H~sv~~~~~~~---~~~~-~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s  154 (370)
T PRK05937         88 CAHL----SSVTDYVLWDEQVHISVVYSLSVI---SGWH-QSFRH-----NDLDHLESLLESCRQRSFGRIFIFVCSVYS  154 (370)
T ss_pred             HHHh----CCCCCEEEEEhhhhHHHHHHHHHc---CCce-EEecC-----CCHHHHHHHHHhhhccCCCcEEEEEecCCC
Confidence            5554    567889999899999987765542   1333 33332     389999998862      456788999999


Q ss_pred             ccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCC----CCC---ccEEEecCcCcCCCCcceEEEEcccccccCCC
Q 017640          220 MLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQ----GLD---ADFLVASSHKMCGPTGIGFLFGKSDLLSAMPP  292 (368)
Q Consensus       220 ~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~----~~~---~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~  292 (368)
                      ++|.+.|+++|.++|+++|+++++|++|+.|..+.+..    .++   .++.+.|++|.+|+.|+|+++. ++..+.+..
T Consensus       155 ~~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g~~G~~vl~~-~~~~~~~~~  233 (370)
T PRK05937        155 FKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALGSMGAALLSS-SEVKQDLML  233 (370)
T ss_pred             CCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhhhcCceEEEcC-HHHHHHHHH
Confidence            99999999999999999999999999999887765542    122   2367789999999999787765 433332221


Q ss_pred             cccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHh
Q 017640          293 FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       293 ~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~  362 (368)
                      ...                  ..+|.. +.+...++++.++++++.+.+ +.+++++.++.+++.+.+..
T Consensus       234 ~~~------------------~~~~s~-~~~~~~~~a~~aal~~l~~~~-~~~~~~l~~l~~~l~~~l~~  283 (370)
T PRK05937        234 NSP------------------PLRYST-GLPPHLLISIQVAYDFLSQEG-ELARKQLFRLKEYFAQKFSS  283 (370)
T ss_pred             hCC------------------CCeecC-CCCHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHhcCC
Confidence            100                  123333 456667889999999998876 66788999999999887754

>PRK08175 aminotransferase; Validated

Probab=99.91  E-value=6.7e-23  Score=195.33  Aligned_cols=259  Identities=15%  Similarity=0.171  Sum_probs=176.9

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----CCC--CCCcEEEeCCH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS--DSGEIVFTKNA  138 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~--~~~~v~~t~g~  138 (368)
                      ++++.|+.+... ..++.+.+++.+.+.....    ..+.    ......++|+++++++    |..  +++++++|+|+
T Consensus        29 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~----~~Y~----~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~  100 (395)
T PRK08175         29 EDIIDFSMGNPDGPTPPHIVEKLCEVAQRPDT----HGYS----TSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGS  100 (395)
T ss_pred             CCeEEcCCCCCCCCCCHHHHHHHHHHHhCCCc----CCCC----CCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCc
Confidence            567788877655 4566677777665532110    1111    1222335666666665    443  33379999999


Q ss_pred             HHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcc---cCceEEEEc
Q 017640          139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS---RKTKLVVIH  215 (368)
Q Consensus       139 t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~---~~~~~v~~~  215 (368)
                      ++++..++.++    +++||+|++++|+|+.....+    +..|++++.++.++++. +.++++++++   +++++|+++
T Consensus       101 ~~~l~~~~~~~----~~~gd~Vlv~~P~y~~~~~~~----~~~g~~~~~v~~~~~~~-~~~~l~~~l~~~~~~~~~v~i~  171 (395)
T PRK08175        101 KEGLAHLMLAT----LDHGDTVLVPNPSYPIHIYGA----VIAGAQVRSVPLVEGVD-FFNELERAIRESYPKPKMMILG  171 (395)
T ss_pred             HHHHHHHHHHh----CCCCCEEEEcCCCCcchHHHH----HHcCCeEEEEecccCCC-cHHHHHHHHhhccCCceEEEEe
Confidence            99999999888    899999999999998865443    34699999999876543 4788888776   378999999


Q ss_pred             ccccccccccCH---HHHHHHHHhcCCEEEEecCCcCCc----ccc---cCCC-CCccEEEecCcCcCCCCc--ceEEEE
Q 017640          216 HISNMLASILPI---EEIVHWSHDVGAKVLVDACQSVPH----MVV---DVQG-LDADFLVASSHKMCGPTG--IGFLFG  282 (368)
Q Consensus       216 ~~~n~tG~~~~l---~~i~~l~~~~g~~li~D~a~~~~~----~~~---~~~~-~~~d~~~~s~~K~~g~~G--~G~l~~  282 (368)
                      +++||||.+++.   ++|.++|++||+++|+|++|..-.    ...   .+.. .+..+++.|+||.||.+|  +||++.
T Consensus       172 ~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~  251 (395)
T PRK08175        172 FPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVG  251 (395)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCcchhheeeeC
Confidence            999999999995   789999999999999999986311    111   1111 234577899999999888  899999


Q ss_pred             cccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHh
Q 017640          283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       283 ~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~  362 (368)
                      ++++++.+.....                    .... +.+.....++..+++.... -++.++++.++..+++.+.|.+
T Consensus       252 ~~~l~~~~~~~~~--------------------~~~~-~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~L~~  309 (395)
T PRK08175        252 NPELVSALARIKS--------------------YHDY-GTFTPLQVAAIAALEGDQQ-CVRDIAEQYKRRRDVLVKGLHE  309 (395)
T ss_pred             CHHHHHHHHHHHh--------------------hccc-CCCcHHHHHHHHHHhCcHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            9988887653321                    0011 2222233444444432222 2566677777778888888876


Q ss_pred             h
Q 017640          363 R  363 (368)
Q Consensus       363 ~  363 (368)
                      .
T Consensus       310 ~  310 (395)
T PRK08175        310 A  310 (395)
T ss_pred             c
Confidence            5

>PRK06460 hypothetical protein; Provisional

Probab=99.91  E-value=2.3e-23  Score=196.36  Aligned_cols=221  Identities=18%  Similarity=0.174  Sum_probs=164.6

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEE
Q 017640          107 AKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLK  186 (368)
Q Consensus       107 ~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~  186 (368)
                      .......+++++.+++++|.+.  .+++ +|+++|+..++.++    +++||+|++.++.|..++..+...++..|++++
T Consensus        41 r~~~p~~~~L~~~lA~l~g~~~--~v~~-~sG~~ai~~~l~al----~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~  113 (376)
T PRK06460         41 REANPTVLELTKKIVELENAEM--GVAF-SSGMGAISTTALAL----LKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVD  113 (376)
T ss_pred             CCCCccHHHHHHHHHHHhCCCc--EEEe-CCHHHHHHHHHHHH----hCCCCEEEEecCCcCcHHHHHHHHHHhhCcEEE
Confidence            3345667789999999999963  5565 45568999999988    899999999999888888778888888899999


Q ss_pred             EEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEe
Q 017640          187 FLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVA  266 (368)
Q Consensus       187 ~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~  266 (368)
                      .++.+     +.+.+++.+++++++|++++++||||.++|+++|.++|+++|+++++|++|+.+.....+ ..+.|+++.
T Consensus       114 ~~~~~-----~~~~l~~~~~~~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~~~~~~l-~~~~divv~  187 (376)
T PRK06460        114 ASNPG-----SDNIIEKAKSKRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPINQKPL-ELGADIVVH  187 (376)
T ss_pred             EECCC-----CHHHHHHhcCCCceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCccccCChh-hcCCCEEEe
Confidence            88865     344566666778999999999999999999999999999999999999999865321112 346899999


Q ss_pred             cCcCcCCCCc---ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHH
Q 017640          267 SSHKMCGPTG---IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQ  343 (368)
Q Consensus       267 s~~K~~g~~G---~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~  343 (368)
                      |++|++++.+   +|+++.++++++.++.....++                    . +.+...   +..+++-++.  ++
T Consensus       188 S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~~~~~g--------------------~-~~~~~~---a~~~l~~~~~--l~  241 (376)
T PRK06460        188 SASKFLAGHNDVIAGLAAGYGKLLNVIDQMRRTLG--------------------T-SLDPHA---AYLTLRGIKT--LK  241 (376)
T ss_pred             ecceeccCCCCceEEEEecCHHHHHHHHHHHHhcC--------------------C-CCCHHH---HHHHHhchhh--HH
Confidence            9999887554   7999998888776653322111                    1 122111   1122222222  34


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCC
Q 017640          344 KIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       344 ~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      ...++..+.+.++.++|++++.+
T Consensus       242 ~r~~~~~~n~~~l~~~L~~~p~v  264 (376)
T PRK06460        242 IRMDVINRNAEQIAEFLEGHPKV  264 (376)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCc
Confidence            55677888889999999887654

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.91  E-value=2.6e-23  Score=196.52  Aligned_cols=218  Identities=21%  Similarity=0.262  Sum_probs=168.0

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      .+...++++.+++++|.+   .+++++|+++|+..++.++    +++||+|+++.+.|.+.+..+...++..|++++.++
T Consensus        53 ~p~~~~le~~la~l~g~~---~~~~~~sG~~Ai~~al~al----~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~  125 (380)
T TIGR01325        53 NPTVAAFEERIAALEGAE---RAVATATGMSAIQAALMTL----LQAGDHVVASRSLFGSTVGFISEILPRFGIEVSFVD  125 (380)
T ss_pred             CchHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHH----hCCCCEEEEecCCcchHHHHHHHHHHHhCCEEEEEC
Confidence            455678999999999985   5678899999999999888    889999999999998887777777788899999998


Q ss_pred             CCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCc
Q 017640          190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH  269 (368)
Q Consensus       190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~  269 (368)
                      .+     |++++++++++++++|++++++||+|.+.|+++|.++|+++|+++++|++|+.+.....+ ..++|+++.|++
T Consensus       126 ~~-----d~~~l~~~i~~~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~~~~~pl-~~g~Divv~S~s  199 (380)
T TIGR01325       126 PT-----DLNAWEAAVKPNTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATPVLQQPL-KLGADVVVYSAT  199 (380)
T ss_pred             CC-----CHHHHHHhcCCCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCch-hhCCCEEEeecc
Confidence            75     799999999889999999999999999999999999999999999999999855432222 457899999999


Q ss_pred             CcCCCCc---ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHH
Q 017640          270 KMCGPTG---IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIH  346 (368)
Q Consensus       270 K~~g~~G---~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~  346 (368)
                      |+++++|   .|+++.++++++.++......                     .++.+....+   .+++-++.  +....
T Consensus       200 K~l~g~g~~~gG~vv~~~~~~~~l~~~~~~~---------------------g~~~~p~~a~---~~l~~l~t--l~~r~  253 (380)
T TIGR01325       200 KHIDGQGRVMGGVIAGSEELMAEVAVYLRHT---------------------GPAMSPFNAW---VLLKGLET--LSLRM  253 (380)
T ss_pred             ceecCCCCeEEEEEEeCHHHHHHHHHHHHhh---------------------CCCCCHHHHH---HHHhccCc--HHHHH
Confidence            9888766   488888888777665432111                     1122222222   22222222  33345


Q ss_pred             HHHHHHHHHHHHHHHhhcCC
Q 017640          347 AYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       347 ~~~~~l~~~l~~~l~~~~g~  366 (368)
                      ++..+.+.++.++|++++++
T Consensus       254 ~~~~~~a~~la~~L~~~p~v  273 (380)
T TIGR01325       254 QKQFDSALAIAEWLQAQPQV  273 (380)
T ss_pred             HHHHHHHHHHHHHHHcCCCc
Confidence            66667777888888877653

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.91  E-value=1.9e-23  Score=197.99  Aligned_cols=223  Identities=17%  Similarity=0.204  Sum_probs=168.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCE
Q 017640          105 LSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGAN  184 (368)
Q Consensus       105 ~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~  184 (368)
                      ++....+..+++++.+++++|.+   ..++++|+++|+..++.++    +++||+|+++.+.|.++...+...++..|++
T Consensus        58 y~r~~~p~~~~le~~lA~l~g~~---~~i~~ssG~~Ai~~~l~al----l~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~  130 (398)
T PRK08249         58 YSRNTNPTVQAFEEKVRILEGAE---AATAFSTGMAAISNTLYTF----LKPGDRVVSIKDTYGGTNKIFTEFLPRMGVD  130 (398)
T ss_pred             ccCCCChHHHHHHHHHHHHhCCC---eEEEeCChHHHHHHHHHHh----cCCCCEEEEcCCchHHHHHHHHHHHhhCCeE
Confidence            33344566778999999999975   4466667788999999887    8999999999999998877777767788999


Q ss_pred             EEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEE
Q 017640          185 LKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFL  264 (368)
Q Consensus       185 v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~  264 (368)
                      +++++..     |++.+++++++++++|++++++||||.+.|+++|.++|++||+++++|++|+.+.....+ ..+.|++
T Consensus       131 v~~vd~~-----d~e~l~~~i~~~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l-~~~~Div  204 (398)
T PRK08249        131 VTLCETG-----DHEQIEAEIAKGCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPINQNPL-ALGADLV  204 (398)
T ss_pred             EEEcCCC-----CHHHHHHhcCCCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCccccCCch-hhCCCEE
Confidence            9887753     899999999999999999999999999999999999999999999999999865432112 3579999


Q ss_pred             EecCcCcCCCCc---ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC
Q 017640          265 VASSHKMCGPTG---IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG  341 (368)
Q Consensus       265 ~~s~~K~~g~~G---~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g  341 (368)
                      +.|++|++|++|   .|+++.++++++.++....                     ....+.+....+.+...++   .  
T Consensus       205 v~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~---------------------~~g~~~s~~~a~l~l~~l~---t--  258 (398)
T PRK08249        205 IHSATKFLSGHADALGGVVCGSKELMEQVYHYRE---------------------INGATMDPMSAYLILRGMK---T--  258 (398)
T ss_pred             eccCceecCCCCCceEEEEECCHHHHHHHHHHHH---------------------hcCCCCCHHHHHHHHhCcc---h--
Confidence            999999888765   5777777777776653321                     0111233322222222333   2  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          342 MQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       342 ~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      +....++..+++..+.++|++++.+
T Consensus       259 L~~R~~~~~~na~~la~~L~~~p~v  283 (398)
T PRK08249        259 LKLRVRQQQESAMALAKYLQTHPKV  283 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCe
Confidence            2333466678888888888877653

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=99.91  E-value=8.1e-23  Score=188.50  Aligned_cols=272  Identities=13%  Similarity=0.145  Sum_probs=206.3

Q ss_pred             EeccCCCCCCcHHHHHHHHHHHHHhhccC--CCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEe-CCHHHHHHHHH
Q 017640           70 YLDNAATSQKPIAVLKALQNYYEAYNSNV--HRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFT-KNATEAINLVA  146 (368)
Q Consensus        70 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t-~g~t~a~~~~~  146 (368)
                      |.-.+++..+|++|++++++.+..+....  -...++.+..+.+.++++++.+.++++.+++++|+|. .|+|.++.++.
T Consensus         6 ~nF~aGPa~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~   85 (364)
T PRK12462          6 LNFSGGPGALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIP   85 (364)
T ss_pred             ceecCCCcCCCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHH
Confidence            33445566889999999998888764411  1124455667889999999999999999876678666 56899999999


Q ss_pred             HHccCCCCCCCCEEE-EcCCCCcccHHHHHHHHHHcCCEEEEEeCC----CCCCCCHHHHHHhcccCceEEEEccccccc
Q 017640          147 YSWGLSNLKSGDEVI-LTVAEHHSAIVPWQLVAQKTGANLKFLNLN----DDESPDLDKLKEMLSRKTKLVVIHHISNML  221 (368)
Q Consensus       147 ~~~~~~~~~~gd~vl-~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~----~~~~~d~~~l~~~l~~~~~~v~~~~~~n~t  221 (368)
                      ..+    +.+|++++ +...++.+..  +...++++| ++..+...    ....++++.+  .+.++.+.|.+++..+.|
T Consensus        86 ~Nl----l~~g~~~~~~~~tG~fg~r--~~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~--~~~~d~~~v~~t~NETst  156 (364)
T PRK12462         86 MNF----SRPGAAAPEYVTTGYWSRK--AIGEASRVA-AMRVVWDGAASGYRTLPSLAEL--DWDARAPFRHYVSNETVE  156 (364)
T ss_pred             HHc----CCCCCcEEEEEeCCHHHHH--HHHHHHhcC-CceEecCcCCCCCCcCCCHHHh--ccCCCCcEEEEccCCCCc
Confidence            988    88999665 5666666654  566677777 55554421    1234456665  344567999999999999


Q ss_pred             ccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCccee
Q 017640          222 ASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMIS  301 (368)
Q Consensus       222 G~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~  301 (368)
                      |+.+|     ++.+.+++++++|.+.+++..++|++++  |++.++.+|.+||+|+++++++++++++..+...      
T Consensus       157 Gv~~~-----~~~~~~~~llvvD~sS~~~s~pid~~~~--dvi~agsQKnlgP~Gltvvivs~~al~~~~~~~p------  223 (364)
T PRK12462        157 GLQFP-----DAAGLPDSPLIADMSSDFMSRPFDVEAY--GMVYAHAQKNLGPAGVTVAIIRRALLERVPDTLP------  223 (364)
T ss_pred             eEecC-----cccccCCCeEEEEcCchhhCCCCChHHc--cEEEeeccccCCCCceEEEEECHHHHhhccccCC------
Confidence            99997     3333478999999999999999999885  9999999999999999999999999987764321      


Q ss_pred             ecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          302 DVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI--GMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~--g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                       .+.++..+.....  ...||++..++++..+++++.+.  |++.+.++.+++++.+++.|.+..|+
T Consensus       224 -~~ldy~~~~~~~s--~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~  287 (364)
T PRK12462        224 -PMLDFRTHVEHRS--NYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEV  287 (364)
T ss_pred             -chhhHHHHHhcCC--CCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence             1112211111112  22399999999999999999887  99999999999999999999988753

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.91  E-value=2.3e-23  Score=196.38  Aligned_cols=219  Identities=20%  Similarity=0.241  Sum_probs=171.3

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEE
Q 017640          109 ATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL  188 (368)
Q Consensus       109 ~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v  188 (368)
                      ..+..+++++.+++++|.+   ..++++|+++|+..++.++    +++||+|+++.+.|+++...+...++..|++++.+
T Consensus        38 ~~p~~~~le~~la~l~g~~---~a~~~~sG~~Ai~~~l~~l----~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v  110 (369)
T cd00614          38 GNPTVDALEKKLAALEGGE---AALAFSSGMAAISTVLLAL----LKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFV  110 (369)
T ss_pred             CChhHHHHHHHHHHHHCCC---CEEEEcCHHHHHHHHHHHH----cCCCCEEEECCCCcchHHHHHHHHHhhcCeEEEEe
Confidence            3566778999999999975   5577788899999999988    88999999999999998877777777889999999


Q ss_pred             eCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecC
Q 017640          189 NLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASS  268 (368)
Q Consensus       189 ~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~  268 (368)
                      +.+     |++++++++++++++|++++++||+|.+.|+++|.++|++||+++++|++++.+... ..-..+.|+++.|+
T Consensus       111 ~~~-----d~~~l~~~i~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~~-~~~~~g~Divv~S~  184 (369)
T cd00614         111 DPD-----DPEALEAAIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQ-RPLELGADIVVHSA  184 (369)
T ss_pred             CCC-----CHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhcC-ChhhhCCcEEEecc
Confidence            876     789999999889999999999999999999999999999999999999999877541 22245789999999


Q ss_pred             cCcCCCCc---ceEEEEcc-cccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHH
Q 017640          269 HKMCGPTG---IGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQK  344 (368)
Q Consensus       269 ~K~~g~~G---~G~l~~~~-~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~  344 (368)
                      +|.+|++|   +|+++.++ ++++.++.....                    + .++.+....+   .++.-++.  +..
T Consensus       185 tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~--------------------~-g~~~~p~~a~---~~l~~l~t--l~~  238 (369)
T cd00614         185 TKYIGGHSDVIAGVVVGSGEALIQRLRFLRLA--------------------L-GTILSPFDAW---LLLRGLKT--LPL  238 (369)
T ss_pred             ceeccCCCCceEEEEEeCcHHHHHHHHHHHHh--------------------h-CCCCCHHHHH---HHHcCCCC--HHH
Confidence            99887665   79999987 777766633221                    0 1122222222   22232322  444


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCC
Q 017640          345 IHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       345 i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      ..++..+++.++.++|.+++++
T Consensus       239 r~~~~~~na~~la~~L~~~~~v  260 (369)
T cd00614         239 RMERHSENALKVAEFLEKHPKV  260 (369)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCc
Confidence            5667788888888999887653

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.91  E-value=5.1e-23  Score=196.78  Aligned_cols=267  Identities=17%  Similarity=0.152  Sum_probs=188.0

Q ss_pred             CeEEeccCCCCCCcHHHHHHHHHHHHHhh--ccCCCCcchhhHHHHHHHHH-HHHHHHHHcCCCCCCcEEEeCCHHHHHH
Q 017640           67 KLVYLDNAATSQKPIAVLKALQNYYEAYN--SNVHRGIHFLSAKATDEYEL-ARKKVAAFINASDSGEIVFTKNATEAIN  143 (368)
Q Consensus        67 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~r~~la~~~~~~~~~~v~~t~g~t~a~~  143 (368)
                      +.++| .++.+.+++.|++++.+.+...+  +++. +.+..+....+.+++ .++.+++++|++.. .|+++ |+++|+.
T Consensus        20 ~~~~~-~~~~~~~~~~v~~a~~~~~~~~~~~g~~~-~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~-~v~~~-sgt~a~~   95 (402)
T cd00378          20 ETLEL-IASENFTSPAVMEAMGSDLTNKYAEGYPG-KRYYGGCEYVDEIEDLAIERAKKLFGAEYA-NVQPH-SGSQANL   95 (402)
T ss_pred             hCeee-eccCCcCCHHHHHHhcccccccccCCCCC-CcccCCchHHHHHHHHHHHHHHHHhCCCce-eeecC-CcHHHHH
Confidence            33444 34455679999999987764322  2332 222333334444444 67788999999753 45555 5679999


Q ss_pred             HHHHHccCCCCCCCCEEEEcCCCCcccHHHHHH-HHHHcCCEEEEEeCCC---CCCCCHHHHHHhcc-cCceEEEEcccc
Q 017640          144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQL-VAQKTGANLKFLNLND---DESPDLDKLKEMLS-RKTKLVVIHHIS  218 (368)
Q Consensus       144 ~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~-~~~~~g~~v~~v~~~~---~~~~d~~~l~~~l~-~~~~~v~~~~~~  218 (368)
                      .++.++    +++||+|++.+++|++....+.. .++..|.+++.++++.   ++.+|++++++++. ++++++++++++
T Consensus        96 ~~l~~l----~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~~~~~v~~~~~~  171 (402)
T cd00378          96 AVYFAL----LEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAGASA  171 (402)
T ss_pred             HHHHHh----cCCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHhCCCCEEEecCcc
Confidence            999998    89999999999999876433211 1345587777777653   58999999999985 578999988886


Q ss_pred             cccccccCHHHHHHHHHhcCCEEEEecCCcCCcc-----cccCCCCCccEEEecCcCcC-CCCcceEEEEcc-cccccCC
Q 017640          219 NMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM-----VVDVQGLDADFLVASSHKMC-GPTGIGFLFGKS-DLLSAMP  291 (368)
Q Consensus       219 n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~-----~~~~~~~~~d~~~~s~~K~~-g~~G~G~l~~~~-~li~~l~  291 (368)
                      |+  ...|+++|.++|++||+++++|++|..|..     +..+.  +.|++++|+||++ |+. +|++++++ ++++.+.
T Consensus       172 ~~--~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~--~~dv~~~s~sK~l~G~~-gg~i~~~~~~~~~~l~  246 (402)
T cd00378         172 YP--RPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP--GADVVTTTTHKTLRGPR-GGLILTRKGELAKKIN  246 (402)
T ss_pred             cC--CCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc--CCcEEEeccccCCCCCC-ceEEEeccHHHHHHHH
Confidence            64  577999999999999999999999876542     22233  5789999999976 555 47777766 7776664


Q ss_pred             CcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       292 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      .....                    ...++++...+.++..++......+.+...++..++++++.+.|.+. |++
T Consensus       247 ~~~~~--------------------~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  301 (402)
T cd00378         247 SAVFP--------------------GLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKER-GFK  301 (402)
T ss_pred             HHhCc--------------------cccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhC-CCe
Confidence            32211                    11235666777777777776655456777888999999999999875 543

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.91  E-value=2.1e-22  Score=191.37  Aligned_cols=259  Identities=18%  Similarity=0.199  Sum_probs=185.7

Q ss_pred             CCCeEEeccCCC-CC-CcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHH
Q 017640           65 SKKLVYLDNAAT-SQ-KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI  142 (368)
Q Consensus        65 ~~~~i~l~~~~~-~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~  142 (368)
                      |..++.+..+.+ ++ .++.+++++.+++..+....  +.+....+..+..+++++.++++++.+   +.++++++++++
T Consensus        38 g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~--~~~~~~~g~~~~~~~l~~~la~~~~~~---~~i~~~~g~~~~  112 (385)
T PRK05958         38 GRRMLNFASNDYLGLARHPRLIAAAQQAARRYGAGS--GGSRLVTGNSPAHEALEEELAEWFGAE---RALLFSSGYAAN  112 (385)
T ss_pred             CceEEEeeCCCcccCCCCHHHHHHHHHHHHhcCCCC--CCcCcccCCcHHHHHHHHHHHHHhCCC---cEEEECcHHHHH
Confidence            456666666543 43 67899999999987643211  111111123456778999999999953   445555566777


Q ss_pred             HHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc---CceEEEEccccc
Q 017640          143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR---KTKLVVIHHISN  219 (368)
Q Consensus       143 ~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~---~~~~v~~~~~~n  219 (368)
                      ..++.++    +++||.|++.++.|++....    ++..|++++.++..     |++.+++.+++   ++++++++++.|
T Consensus       113 ~~~l~~~----~~~gd~V~~~~~~~~~~~~~----~~~~g~~~~~~~~~-----d~~~l~~~i~~~~~~~~lvi~~~~~~  179 (385)
T PRK05958        113 LAVLTAL----AGKGDLIVSDKLNHASLIDG----ARLSRARVRRYPHN-----DVDALEALLAKWRAGRALIVTESVFS  179 (385)
T ss_pred             HHHHHHh----CCCCCEEEEeCccCHHHHHH----HHhcCCceEEeCCC-----CHHHHHHHHHhccCCCeEEEEEeccc
Confidence            7777776    89999999999998886543    34568888888764     88999998865   367788888999


Q ss_pred             ccccccCHHHHHHHHHhcCCEEEEecCCcCCccc------c---cCCCCCccEEEecCcCcCCCCcceEEEEcccccccC
Q 017640          220 MLASILPIEEIVHWSHDVGAKVLVDACQSVPHMV------V---DVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAM  290 (368)
Q Consensus       220 ~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~------~---~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l  290 (368)
                      ++|...++++|.++|++||+++|+|++|+.+...      .   .+.....++++.|+||.+|+.| |+++.++++++.+
T Consensus       180 ~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-g~~~~~~~~~~~~  258 (385)
T PRK05958        180 MDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSSG-AAVLGSETLIDYL  258 (385)
T ss_pred             CCCCcCCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhcccCC-cEEEcCHHHHHHH
Confidence            9999999999999999999999999999865432      1   1222335588999999999887 8888888776654


Q ss_pred             CCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          291 PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       291 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      ......                  ..+ .+..+..+.+++.++++.+...  +.+.++..++.+++.+.|.+.
T Consensus       259 ~~~~~~------------------~~~-~~~~~~~~~aa~~aal~~~~~~--~~~~~~~~~~~~~l~~~L~~~  310 (385)
T PRK05958        259 INRARP------------------FIF-TTALPPAQAAAARAALRILRRE--PERRERLAALIARLRAGLRAL  310 (385)
T ss_pred             HHhCcc------------------cee-cCCCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHc
Confidence            321100                  001 1235556677777888877653  677888999999999988764

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.91  E-value=2.9e-23  Score=194.31  Aligned_cols=224  Identities=21%  Similarity=0.267  Sum_probs=174.3

Q ss_pred             HHHHHHHHHHHcCCC-----CCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEE
Q 017640          113 YELARKKVAAFINAS-----DSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKF  187 (368)
Q Consensus       113 ~~~~r~~la~~~~~~-----~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~  187 (368)
                      ..++++.++++++..     ...++++++|+++++..++.++    .++||+|+++.++|++...    .++..|.+++.
T Consensus        38 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~----~~~g~~vl~~~~~~~~~~~----~~~~~~~~~~~  109 (350)
T cd00609          38 LPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRAL----LNPGDEVLVPDPTYPGYEA----AARLAGAEVVP  109 (350)
T ss_pred             cHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHh----CCCCCEEEEcCCCchhHHH----HHHHCCCEEEE
Confidence            345666666666544     1348999999999999999988    7889999999999988544    44566999999


Q ss_pred             EeCCCCCCCCH--HHHHHhcccCceEEEEcccccccccccCHHH---HHHHHHhcCCEEEEecCCcCCcc----c---cc
Q 017640          188 LNLNDDESPDL--DKLKEMLSRKTKLVVIHHISNMLASILPIEE---IVHWSHDVGAKVLVDACQSVPHM----V---VD  255 (368)
Q Consensus       188 v~~~~~~~~d~--~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~---i~~l~~~~g~~li~D~a~~~~~~----~---~~  255 (368)
                      ++.++++..+.  +.++....+++++|++++++||||.++|+++   |.++|+++|+++|+|++|+.+..    .   ..
T Consensus       110 i~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~  189 (350)
T cd00609         110 VPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALAL  189 (350)
T ss_pred             EecccccCCccCHHHHHhhcCccceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccC
Confidence            99987776665  6777777789999999999999999999554   45899999999999999985432    1   12


Q ss_pred             CCCCCccEEEecCcCcCCCCc--ceEEEEcc-cccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 017640          256 VQGLDADFLVASSHKMCGPTG--IGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGA  332 (368)
Q Consensus       256 ~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~-~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~  332 (368)
                      ....+.|++++|++|.++.+|  +|++++++ ++++.++...                     ++..++++.....++..
T Consensus       190 ~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~  248 (350)
T cd00609         190 LDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLL---------------------PYTTSGPSTLSQAAAAA  248 (350)
T ss_pred             cCccCcEEEEeecccccCCcccceEEEecCHHHHHHHHHHHH---------------------HhcccCCChHHHHHHHH
Confidence            344568999999999877444  89999999 6777665332                     12234778888888888


Q ss_pred             HHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          333 AIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       333 al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      +++... .+.++++++..++++++.+.|.+....
T Consensus       249 ~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~  281 (350)
T cd00609         249 ALDDGE-EHLEELRERYRRRRDALLEALKELGPL  281 (350)
T ss_pred             HHhCcH-HHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            887664 457889999999999999999887543

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.91  E-value=2.7e-22  Score=204.82  Aligned_cols=285  Identities=16%  Similarity=0.119  Sum_probs=216.5

Q ss_pred             CCeEEeccCCCCC----CcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHH
Q 017640           66 KKLVYLDNAATSQ----KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEA  141 (368)
Q Consensus        66 ~~~i~l~~~~~~~----~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a  141 (368)
                      ++.+|+++.+.|.    .|+.+.+++.+....+..+... ....+++..+.+.+++..+++++|++.. ++.++.++|++
T Consensus       100 kN~~~~~fiG~G~y~~~~P~~v~~~i~~~~~~~TaytPY-qaEisQG~lqal~~~Qt~ia~LtG~~~a-naSL~d~aTAa  177 (993)
T PLN02414        100 KNKVFKSYIGMGYYNTHVPPVILRNILENPGWYTQYTPY-QAEIAQGRLESLLNYQTMITDLTGLPMS-NASLLDEGTAA  177 (993)
T ss_pred             cCCccccccCCCCCCccCCHHHHHHHHhChHHHhhcCCC-chHHHHHHHHHHHHHHHHHHHHhCCChh-hEeecCChHHH
Confidence            3445777766665    7888878887666544333211 2234567788899999999999999876 99999999999


Q ss_pred             HHHHHHHccCCCCCC--CCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEccccc
Q 017640          142 INLVAYSWGLSNLKS--GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISN  219 (368)
Q Consensus       142 ~~~~~~~~~~~~~~~--gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n  219 (368)
                      .+.++++++   +++  +++|++++.+|+++...++..++..|++++.++.+...         ...+.+..+ +.+..|
T Consensus       178 aea~~~a~~---~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~~---------~~~~~v~~v-lvq~P~  244 (993)
T PLN02414        178 AEAMAMCNN---ILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDFD---------YSSGDVCGV-LVQYPA  244 (993)
T ss_pred             HHHHHHHHh---cccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhhc---------cccCceEEE-EEecCC
Confidence            999988873   554  47899999999999999999999999999999874211         112233333 345556


Q ss_pred             ccccccCHHHHHHHHHhcCCEEEEecCCcCCcccc-cCCCCCccEEEecCcCcCCCCc-----ceEEEEcccccccCCCc
Q 017640          220 MLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVV-DVQGLDADFLVASSHKMCGPTG-----IGFLFGKSDLLSAMPPF  293 (368)
Q Consensus       220 ~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~-~~~~~~~d~~~~s~~K~~g~~G-----~G~l~~~~~li~~l~~~  293 (368)
                      .+|.+.|+++|.++||++|+++++ +++.++...+ +..++++|+++++.||+.+|.|     .|++++++++.+.+.+.
T Consensus       245 ~~G~v~dv~~I~~~ah~~GaL~iV-aad~lal~~l~~pge~GADi~vgsgqKwg~P~G~GGP~aGflavr~~~~r~~Pgr  323 (993)
T PLN02414        245 TDGEVLDYAEFVKNAHANGVKVVM-ATDLLALTMLKPPGEWGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRLMPGR  323 (993)
T ss_pred             CCeEEcCHHHHHHHHHHcCCEEEE-EECHHHhcCCCCHhhccCcEEEECCCccccCCCCCCCCeeEEEECHHHHhhCCCc
Confidence            799999999999999999999999 8888877777 4778899999999999874333     89999999998766667


Q ss_pred             ccCCcceeecccC---CCCCCCCCCCCCCCCCCHHHHHHHHHHHH-----HHHHhCHHHHHHHHHHHHHHHHHHHHhhcC
Q 017640          294 LGGGEMISDVFLD---HSTFADPPSRFEAGTPAIGEAIGLGAAID-----YLSTIGMQKIHAYEVKWIICSIIVIQERHN  365 (368)
Q Consensus       294 ~~g~~~~~~~~~~---~~~~~~~~~~~~~gt~~~~~~~a~~~al~-----~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g  365 (368)
                      +.||+........   .....+.+.||+.||.|+.+..++.+++.     ++...|++++++++.+++.++.+.|.+ .|
T Consensus       324 iVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~-~G  402 (993)
T PLN02414        324 IIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKK-LG  402 (993)
T ss_pred             ccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhh-cC
Confidence            8888432111000   12235567899999999977777776664     334479999999999999999999976 46


Q ss_pred             CC
Q 017640          366 TT  367 (368)
Q Consensus       366 ~t  367 (368)
                      ++
T Consensus       403 ~~  404 (993)
T PLN02414        403 FQ  404 (993)
T ss_pred             Cc
Confidence            54

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.91  E-value=1.7e-22  Score=192.82  Aligned_cols=260  Identities=15%  Similarity=0.118  Sum_probs=188.3

Q ss_pred             CCCeEEeccCC-CC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHH
Q 017640           65 SKKLVYLDNAA-TS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI  142 (368)
Q Consensus        65 ~~~~i~l~~~~-~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~  142 (368)
                      |+.+++|..+. .+ +.++.+.+++.+.+..... .+ ..+....+..+..+++++.+++++|.+  ++|++|+| ++++
T Consensus        41 g~~~i~l~~~~~~~~~~~~~i~~a~~~~~~~~~~-~~-~~~~~~~G~~~l~~~l~~~la~~~g~~--~~i~~tsG-~~a~  115 (397)
T PRK06939         41 GKEVINFCANNYLGLANHPELIAAAKAALDSHGF-GM-ASVRFICGTQDLHKELEEKLAKFLGTE--DAILYSSC-FDAN  115 (397)
T ss_pred             CCeEEEeeccCccccCCCHHHHHHHHHHHHHcCC-CC-cccccccCCcHHHHHHHHHHHHHhCCC--cEEEEcCh-HHHH
Confidence            46678887765 34 3688899999988876421 10 011111223566778999999999975  37777777 7789


Q ss_pred             HHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc------CceEEEEcc
Q 017640          143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR------KTKLVVIHH  216 (368)
Q Consensus       143 ~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~------~~~~v~~~~  216 (368)
                      ..++.++    +++||+|++.+|.|++....    ++..|++++.++.     .|++++++.+++      ++++|++++
T Consensus       116 ~~~~~~l----~~~gd~vi~~~~~~~~~~~~----~~~~~~~~~~~~~-----~d~~~l~~~i~~~~~~~~~~~~v~~~~  182 (397)
T PRK06939        116 GGLFETL----LGKEDAIISDALNHASIIDG----VRLCKAKRYRYAN-----NDMADLEAQLKEAKEAGARHKLIATDG  182 (397)
T ss_pred             HHHHHHh----CCCCCEEEEEhhhhHHHHHH----HHhcCCceEEeCC-----CCHHHHHHHHHhhhccCCCCeEEEEec
Confidence            8888887    89999999999999886543    3455888877765     388888887753      678899999


Q ss_pred             cccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccc------cCCC--CCccEEEecCcCcCCCCcceEEEEcccccc
Q 017640          217 ISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVV------DVQG--LDADFLVASSHKMCGPTGIGFLFGKSDLLS  288 (368)
Q Consensus       217 ~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~------~~~~--~~~d~~~~s~~K~~g~~G~G~l~~~~~li~  288 (368)
                      .+|++|...++++|.++|++||+++|+|++|+.+....      ....  .++|++++|+||.+++..+||+++++++++
T Consensus       183 v~~~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~r~G~v~~~~~~~~  262 (397)
T PRK06939        183 VFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGASGGYTAGRKEVID  262 (397)
T ss_pred             CcCCCCCcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCccCceEEEeCHHHHH
Confidence            99999999999999999999999999999997553311      1111  247899999999874334699999998887


Q ss_pred             cCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          289 AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       289 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      .+.......                   ...++++....+++..+++++..  .+.++++..++.+++.+.|.+.
T Consensus       263 ~l~~~~~~~-------------------~~~~~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~  316 (397)
T PRK06939        263 WLRQRSRPY-------------------LFSNSLAPAIVAASIKVLELLEE--SDELRDRLWENARYFREGMTAA  316 (397)
T ss_pred             HHHHhCccc-------------------cccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc
Confidence            765321100                   01224455556667777777754  3677888889999999988765

>PLN02231 alanine transaminase

Probab=99.91  E-value=1.6e-22  Score=197.76  Aligned_cols=228  Identities=16%  Similarity=0.171  Sum_probs=163.9

Q ss_pred             HHHHHHHHHHHHHHc----CCC-CCCcEEEeCCHHHHHHHHHHHccCCCC-CCCCEEEEcCCCCcccHHHHHHHHHHcCC
Q 017640          110 TDEYELARKKVAAFI----NAS-DSGEIVFTKNATEAINLVAYSWGLSNL-KSGDEVILTVAEHHSAIVPWQLVAQKTGA  183 (368)
Q Consensus       110 ~~~~~~~r~~la~~~----~~~-~~~~v~~t~g~t~a~~~~~~~~~~~~~-~~gd~vl~~~~~~~s~~~~~~~~~~~~g~  183 (368)
                      .....++|+.+++++    |.+ .+++|++|+|+++++.+++.++    + .+||.|+++.|.|+.    +...++..|+
T Consensus       167 s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l----~~~~gd~Vli~~P~Y~~----y~~~~~~~g~  238 (534)
T PLN02231        167 SQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL----IRSEKDGILCPIPQYPL----YSASIALHGG  238 (534)
T ss_pred             CCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHh----ccCCCCEEEEeCCCChh----HHHHHHHcCC
Confidence            444557777777776    332 2359999999999999999988    6 479999999998877    4445566799


Q ss_pred             EEEEEeCCCC--CCCCHHHHHHhccc------CceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc
Q 017640          184 NLKFLNLNDD--ESPDLDKLKEMLSR------KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM  252 (368)
Q Consensus       184 ~v~~v~~~~~--~~~d~~~l~~~l~~------~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~  252 (368)
                      +++.++++++  |.+|+++|++++++      +++++++++|+||||.+++   +++|+++|++||++||+|++|..-..
T Consensus       239 ~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y  318 (534)
T PLN02231        239 TLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVY  318 (534)
T ss_pred             EEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhccc
Confidence            9999999853  78999999998865      6899999999999999999   77899999999999999999873111


Q ss_pred             -------cc-cCC------CCC-ccEEEecCcC-cCCCCc--ceEEEE---cccccccCCCcccCCcceeecccCCCCCC
Q 017640          253 -------VV-DVQ------GLD-ADFLVASSHK-MCGPTG--IGFLFG---KSDLLSAMPPFLGGGEMISDVFLDHSTFA  311 (368)
Q Consensus       253 -------~~-~~~------~~~-~d~~~~s~~K-~~g~~G--~G~l~~---~~~li~~l~~~~~g~~~~~~~~~~~~~~~  311 (368)
                             ++ .+.      ..+ ..+++.|+|| ++|.+|  +||+.+   ++++++.+.....                
T Consensus       319 ~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~~~l~~~l~k~~~----------------  382 (534)
T PLN02231        319 VPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVAS----------------  382 (534)
T ss_pred             CCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEEecCCHHHHHHHHHHHh----------------
Confidence                   11 110      011 3467789999 458788  999986   5677766543221                


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHH-------HHHHh--CHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          312 DPPSRFEAGTPAIGEAIGLGAAID-------YLSTI--GMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       312 ~~~~~~~~gt~~~~~~~a~~~al~-------~~~~~--g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                           .. .+++..+..++..+++       .+...  ..+.+++..++.++++.+.|.+.+|++
T Consensus       383 -----~~-~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~gi~  441 (534)
T PLN02231        383 -----VN-LCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVT  441 (534)
T ss_pred             -----hh-cCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence                 01 1344555555555552       11111  134566778888888888888776654

>PRK05839 hypothetical protein; Provisional

Probab=99.91  E-value=1.7e-22  Score=191.05  Aligned_cols=211  Identities=17%  Similarity=0.184  Sum_probs=149.8

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC-CCCcEEEeCCHHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-DSGEIVFTKNATEAIN  143 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~~v~~t~g~t~a~~  143 (368)
                      .+++.|+.+.+. +.++.+.+++.+.......++..      .+..++.+.+.+.+++..|.+ .+++|++|+|+++++.
T Consensus        24 ~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~~Y~~~------~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~   97 (374)
T PRK05839         24 YKGLDLTIGEPQFETPKFIQDALKNNAHLLNKYPKS------AGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLF   97 (374)
T ss_pred             CCeEEcCCCCCCCCCCHHHHHHHHHHhhccCCCCCC------CCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHH
Confidence            478999998876 56777888877654432222211      111233333444444444643 3359999999999999


Q ss_pred             HHHHHccCCCC-CCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC--CCCCHHHHHHhcccCceEEEEcccccc
Q 017640          144 LVAYSWGLSNL-KSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLVVIHHISNM  220 (368)
Q Consensus       144 ~~~~~~~~~~~-~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~l~~~~~~v~~~~~~n~  220 (368)
                      .++.++   .. ++||.|++++|.|+.    +...++..|++++.++.+++  +.+|+.+.+  + +++++|++++|+||
T Consensus        98 ~~~~~~---~~~~~gd~vlv~~P~y~~----~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~~--~-~~~k~v~i~nP~NP  167 (374)
T PRK05839         98 NFPQFV---LFDKQNPTIAYPNPFYQI----YEGAAIASRAKVLLMPLTKENDFTPSLNEKE--L-QEVDLVILNSPNNP  167 (374)
T ss_pred             HHHHHH---hcCCCCCEEEECCCCchh----hHHHHHhcCCEEEEeecccccCCcCCcchhh--h-ccccEEEEeCCCCC
Confidence            988876   12 579999999997777    44445677999999999743  555554332  3 46899999999999


Q ss_pred             cccccC---HHHHHHHHHhcCCEEEEecCCcCCc----c-c-ccC------CCCCccEEEecCcCcCCCCc--ceEEEEc
Q 017640          221 LASILP---IEEIVHWSHDVGAKVLVDACQSVPH----M-V-VDV------QGLDADFLVASSHKMCGPTG--IGFLFGK  283 (368)
Q Consensus       221 tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~----~-~-~~~------~~~~~d~~~~s~~K~~g~~G--~G~l~~~  283 (368)
                      ||.+++   +++|+++|++||+++|+|++|..-.    . . ...      ...+..+++.|+||.||.+|  +||++.+
T Consensus       168 TG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ii~~  247 (374)
T PRK05839        168 TGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAGD  247 (374)
T ss_pred             cCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCccceeEEEecC
Confidence            999999   6788888999999999999987311    1 1 111      12246689999999999888  9999999


Q ss_pred             ccccccCCC
Q 017640          284 SDLLSAMPP  292 (368)
Q Consensus       284 ~~li~~l~~  292 (368)
                      +++++.+..
T Consensus       248 ~~~~~~~~~  256 (374)
T PRK05839        248 ASILKKYKA  256 (374)
T ss_pred             HHHHHHHHH
Confidence            888876653

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.91  E-value=2.6e-22  Score=190.80  Aligned_cols=257  Identities=21%  Similarity=0.220  Sum_probs=186.2

Q ss_pred             CCCeEEeccCC-CCC-CcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHH
Q 017640           65 SKKLVYLDNAA-TSQ-KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI  142 (368)
Q Consensus        65 ~~~~i~l~~~~-~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~  142 (368)
                      |++++.|..+. .+. .++.+.+++.+.+..+....  +.+....+..+..+++++.+++++|.+  ..+++++| ++++
T Consensus        32 g~~~id~~~~~~~g~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~g~~~l~~~l~~~l~~~~g~~--~~i~~~sG-~~a~  106 (385)
T TIGR01825        32 GKEVINLSSNNYLGFADHPRLKEAAAQAIQQYGVGA--GAVRTIAGTLRLHEELEEKLAKFKKTE--AALVFQSG-FNTN  106 (385)
T ss_pred             CceEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCC--CccCcccCCcHHHHHHHHHHHHHhCCC--cEEEECcH-HHHH
Confidence            36677777665 454 78899999988877542111  111112233567788999999999964  36777666 6677


Q ss_pred             HHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc----CceEEEEcccc
Q 017640          143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR----KTKLVVIHHIS  218 (368)
Q Consensus       143 ~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~----~~~~v~~~~~~  218 (368)
                      ..++.++    +++||.|++.++.|++....+    ...|++++.++     .+|++++++.+.+    ++++|++++++
T Consensus       107 ~~a~~~~----~~~gd~vi~~~~~~~~~~~~~----~~~g~~~~~~~-----~~d~~~l~~~l~~~~~~~~~~v~~~~v~  173 (385)
T TIGR01825       107 QGVLSAL----LRKGDIVLSDELNHASIIDGL----RLTKATKKIYK-----HADMDDLDRVLRENPSYGKKLIVTDGVF  173 (385)
T ss_pred             HHHHHHh----CCCCCEEEEEccccHHHHHHH----HhcCCceEEeC-----CCCHHHHHHHHHhhccCCCeEEEEecCC
Confidence            7888877    889999999999888865433    34577776664     3478888887653    68899999999


Q ss_pred             cccccccCHHHHHHHHHhcCCEEEEecCCcCCccc---------ccCCCCCccEEEecCcCcCCCCcceEEEEccccccc
Q 017640          219 NMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMV---------VDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSA  289 (368)
Q Consensus       219 n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~---------~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~  289 (368)
                      |+||.+.|+++|.++|++||+++|+|++|+.+...         +++. .+.|+++.|+||.+|+.| |+++.++++++.
T Consensus       174 ~~tG~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g-G~~~~~~~~~~~  251 (385)
T TIGR01825       174 SMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLE-DKVDIQVGTLSKAIGVVG-GYAAGHKELIEY  251 (385)
T ss_pred             cCCCCccCHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCC-cCCcEEEEeccHHhhcCC-CEEecCHHHHHH
Confidence            99999999999999999999999999999865432         2232 468899999999998776 899888888776


Q ss_pred             CCCcccCCcceeecccCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          290 MPPFLGGGEMISDVFLDHSTFADPPSRFE-AGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       290 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +.....                    .+. .++.+...++++.++++.+.+.  ..+.++..++.+++.+.|.+.
T Consensus       252 ~~~~~~--------------------~~~~~~~~~~~~~~a~~~al~~~~~~--~~~~~~~~~~~~~l~~~L~~~  304 (385)
T TIGR01825       252 LKNRAR--------------------PFLFSTAQPPAVVAALAAAVDELQRS--PELMERLWDNTRFFKAGLGKL  304 (385)
T ss_pred             HHHhCc--------------------cccccCCCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHc
Confidence            543211                    111 1234556677888888876552  346677778888888888764

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.91  E-value=2.3e-22  Score=206.11  Aligned_cols=281  Identities=15%  Similarity=0.098  Sum_probs=214.1

Q ss_pred             EEeccCCCCCC-cHHHHHHHHHHHHHhhcc-CCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHH
Q 017640           69 VYLDNAATSQK-PIAVLKALQNYYEAYNSN-VHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVA  146 (368)
Q Consensus        69 i~l~~~~~~~~-~~~v~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~  146 (368)
                      .|++.+.++.. |+.+.+.+.+.-..+..+ |+  +...+++..+.+.+++..+++++|++.. ++.++.++|++.+.++
T Consensus        79 ~~ig~G~y~~~~P~vi~~~i~~~~~~~t~ytPy--Q~EisQG~Leal~~~Qt~la~LtG~~~a-naSl~d~aTAa~ea~~  155 (954)
T PRK05367         79 SYIGQGYYGTHTPPVILRNILENPAWYTAYTPY--QPEISQGRLEALLNFQTMVADLTGLEIA-NASLLDEATAAAEAMA  155 (954)
T ss_pred             cccCCCCCCCcCcHHHHHHHHhCcchhhccCCC--ChHHHHHHHHHHHHHHHHHHHHHCCChh-hccccccHHHHHHHHH
Confidence            47888888754 444546555432222222 32  2236777889999999999999999876 8999999999999999


Q ss_pred             HHccCCCCCC--CCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccc
Q 017640          147 YSWGLSNLKS--GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI  224 (368)
Q Consensus       147 ~~~~~~~~~~--gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~  224 (368)
                      .+++   +++  +++|++++.+|+++...++..++..|++++.++.+.+    ++      .+++..+++.. .|.+|.+
T Consensus       156 ~a~~---~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~d----~~------~~~~~~vlvq~-p~~~G~i  221 (954)
T PRK05367        156 LAKR---VSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDAAKA----LD------HDDVFGVLLQY-PGTSGEV  221 (954)
T ss_pred             Hhhh---hccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecCccC----CC------cccEEEEEEec-CCCCeee
Confidence            8873   555  4899999999999999999999999999999997542    11      23454554444 5889999


Q ss_pred             cCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCc-----CCCCcceEEEEcccccccCCCcccCCcc
Q 017640          225 LPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKM-----CGPTGIGFLFGKSDLLSAMPPFLGGGEM  299 (368)
Q Consensus       225 ~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~-----~g~~G~G~l~~~~~li~~l~~~~~g~~~  299 (368)
                      .|+++|+++||++|+++++|+.+.......+..++++|++++|.||+     ||+||.|++++++++.+.+.+.+.||+.
T Consensus       222 ~d~~~i~~~ah~~Gal~~vda~~~Al~~l~~pge~GaDi~vgs~qkfg~P~g~GGP~aGflavr~~~~r~lpgrivG~s~  301 (954)
T PRK05367        222 RDYTALIAAAHARGALVAVAADLLALTLLTPPGEMGADIAVGSAQRFGVPMGFGGPHAAYFAVRDAYKRSMPGRIVGVSV  301 (954)
T ss_pred             ccHHHHHHHHHHcCCEEEEEehhhhccCCCChhhcCCCEEEeeCcccCCCCCCCCCCEEEEEECHHHHhhCCCCeeeeec
Confidence            99999999999999999999987544444467888999999999998     7777899999999999999989888753


Q ss_pred             eeeccc---CCCCCCCCCCCCCCCCCCHHHHHHHHHHH-----HHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          300 ISDVFL---DHSTFADPPSRFEAGTPAIGEAIGLGAAI-----DYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       300 ~~~~~~---~~~~~~~~~~~~~~gt~~~~~~~a~~~al-----~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      ......   ......+.+.||+.||.|+....++.+.+     .++...|++++.+++..++.++.+.|.+ .|++
T Consensus       302 d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~-~G~~  376 (954)
T PRK05367        302 DAAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRA-LGLE  376 (954)
T ss_pred             ccCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh-cCcc
Confidence            211110   01223445678999999998654444433     5577789999999999999999999976 5654

>PRK07503 methionine gamma-lyase; Provisional

Probab=99.91  E-value=5.6e-23  Score=195.34  Aligned_cols=169  Identities=24%  Similarity=0.348  Sum_probs=143.6

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      .+..+++++.+++++|.+   ..++++|++.|+.+++.++    +++||+|++..+.|..++..+...++..|++++.++
T Consensus        64 ~p~~~~le~~lA~l~g~~---~~i~~~sG~~Al~~~l~~l----l~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd  136 (403)
T PRK07503         64 NPTLALLEQRMASLEGGE---AAVALASGMGAITATLWTL----LRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVD  136 (403)
T ss_pred             CchHHHHHHHHHHHhCCC---cEEEEcCHHHHHHHHHHHH----cCCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeC
Confidence            445678999999999986   3466667788999999887    899999999999988777666666777899999998


Q ss_pred             CCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCc
Q 017640          190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH  269 (368)
Q Consensus       190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~  269 (368)
                      .+     |++.+++++++++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+.....+ ..+.|+++.|++
T Consensus       137 ~~-----d~~~l~~~i~~~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~~~~~~l-~~g~Di~v~S~t  210 (403)
T PRK07503        137 LT-----DPAALKAAISDKTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQRPL-ELGADLVVHSAT  210 (403)
T ss_pred             CC-----CHHHHHHhcCccCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCch-hhCCCEEEcccc
Confidence            75     899999999999999999999999999999999999999999999999999866442222 357899999999


Q ss_pred             CcCCCCc---ceEEEEcccccccCC
Q 017640          270 KMCGPTG---IGFLFGKSDLLSAMP  291 (368)
Q Consensus       270 K~~g~~G---~G~l~~~~~li~~l~  291 (368)
                      |++|++|   +|+++.+++++++++
T Consensus       211 K~l~g~gd~~gG~v~~~~~l~~~l~  235 (403)
T PRK07503        211 KYLGGHGDITAGLVVGGKALADRIR  235 (403)
T ss_pred             ccccCCCceeEEEEEcCHHHHHHHH
Confidence            9988765   788888888777665

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.91  E-value=4.4e-23  Score=195.27  Aligned_cols=220  Identities=19%  Similarity=0.227  Sum_probs=170.2

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      .+..+++++.+|+++|.+   ..++++|+++|+..++.++    +++||+|+++.+.|.+.+..+...+...|+++++++
T Consensus        58 ~p~~~~le~~lA~l~g~~---~av~~~sG~~Ai~~~l~al----~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd  130 (391)
T TIGR01328        58 NPTVSNLEGRIAFLEGTE---AAVATSSGMGAIAATLLTI----LKAGDHLISDECLYGCTFALLEHALTKFGIQVDFIN  130 (391)
T ss_pred             CchHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHH----hCCCCEEEEecCcchHHHHHHHHHHhcCCeEEEEEC
Confidence            345668999999999986   3577888889999999888    889999999999999888778887888899999998


Q ss_pred             CCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCc
Q 017640          190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH  269 (368)
Q Consensus       190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~  269 (368)
                      .+     |++++++++++++++|++++++||+|.+.|+++|.++|+++|+++++|++++.+.....+ ..+.|+++.|++
T Consensus       131 ~~-----d~e~l~~~i~~~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~~~~~~~-~~g~Divv~S~s  204 (391)
T TIGR01328       131 MA-----IPEEVKAHIKDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPMLTNPV-ALGVDVVVHSAT  204 (391)
T ss_pred             CC-----CHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchhccCCch-hcCCCEEEcccc
Confidence            76     899999999999999999999999999999999999999999999999999876543222 357999999999


Q ss_pred             CcCCCCc---ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHhCHHHH
Q 017640          270 KMCGPTG---IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTP-AIGEAIGLGAAIDYLSTIGMQKI  345 (368)
Q Consensus       270 K~~g~~G---~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~-~~~~~~a~~~al~~~~~~g~~~i  345 (368)
                      |.+|++|   .|+++.++++++.++.....                   ....+.. +....    .++.-++.  +...
T Consensus       205 K~lgg~g~~~gG~v~~~~~li~~l~~~~~~-------------------~~~g~~l~~~~a~----l~l~~L~t--l~~r  259 (391)
T TIGR01328       205 KYIGGHGDVVAGLICGKAELLQQIRMVGIK-------------------DMTGSVISPFDAW----LILRGLKT--LNIR  259 (391)
T ss_pred             ccccCCCCceEEEEEcCHHHHHHHHHHHHH-------------------hCCCCCCCcHHHH----HHHhCcCc--HHHH
Confidence            9998766   58888888887766532100                   0000111 12221    12222222  3444


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCC
Q 017640          346 HAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       346 ~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      .++..+++.++.++|+++++++
T Consensus       260 ~~~~~~na~~la~~L~~~p~v~  281 (391)
T TIGR01328       260 MKRHSENAMKVAEYLKSHPAVE  281 (391)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcc
Confidence            6777888888999998887643

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK09028 cystathionine beta-lyase; Provisional

Probab=99.91  E-value=4.8e-23  Score=193.72  Aligned_cols=216  Identities=11%  Similarity=0.092  Sum_probs=163.1

Q ss_pred             HHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC
Q 017640          112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN  191 (368)
Q Consensus       112 ~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~  191 (368)
                      ....+++.++++.+..   ++++++|+++|+..++.++    +++||+|++.++.|.+....+....+..|+++.+++..
T Consensus        62 t~~~Le~~iA~le~~~---~~~~~~sG~~Ai~~~l~al----l~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~  134 (394)
T PRK09028         62 THFAFQAAIVELEGGA---GTALYPSGAAAISNALLSF----LKAGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPM  134 (394)
T ss_pred             hHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHH----hCCCCEEEEECCCcHHHHHHHHHhhhhcceEEEEECCC
Confidence            3558999999998764   6789999999999999988    89999999999999887765555667789999888654


Q ss_pred             CCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCc
Q 017640          192 DDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKM  271 (368)
Q Consensus       192 ~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~  271 (368)
                           +.+.+++++++++++|++++++||||.+.|+++|+++||+||+++++|++|+.+.. ....++++|+++.|.+|+
T Consensus       135 -----~~e~l~~~l~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~-~~Pl~~GaDivv~S~tK~  208 (394)
T PRK09028        135 -----IGEGIRELIRPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPIN-SRPFEMGVDISIQAATKY  208 (394)
T ss_pred             -----CHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCcccccc-CCccccCceEEEEeCCeE
Confidence                 56889999999999999999999999999999999999999999999999998753 333467899999999998


Q ss_pred             CCCCc---ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHH
Q 017640          272 CGPTG---IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAY  348 (368)
Q Consensus       272 ~g~~G---~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~  348 (368)
                      ++++|   .|+++.++++.+.++.....                     ..++.+...   +...++-+++  +....++
T Consensus       209 l~Gh~d~~~G~~~~~~~~~~~l~~~~~~---------------------~G~~~~p~~---a~l~~rgl~T--L~lR~~~  262 (394)
T PRK09028        209 IVGHSDVMLGTATANEKHWDQLREHSYL---------------------MGQCTSPDD---VYLAMRGLRT--LGVRLAQ  262 (394)
T ss_pred             ecCCCCEEEEEEECCHHHHHHHHHHHHh---------------------cCCCCCHHH---HHHHHcccCc--HHHHHHH
Confidence            87665   77776666654444322110                     011222211   1111222222  4455567


Q ss_pred             HHHHHHHHHHHHHhhcCC
Q 017640          349 EVKWIICSIIVIQERHNT  366 (368)
Q Consensus       349 ~~~l~~~l~~~l~~~~g~  366 (368)
                      ..+.+..+.++|++++.+
T Consensus       263 ~~~na~~la~~L~~~p~v  280 (394)
T PRK09028        263 HEKNALKVANWLATRPEV  280 (394)
T ss_pred             HHHHHHHHHHHHhcCCCc
Confidence            778888888889888753

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=99.91  E-value=2.9e-22  Score=186.58  Aligned_cols=243  Identities=15%  Similarity=0.143  Sum_probs=175.3

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHH--hhccCCCCcchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEA--YNSNVHRGIHFLSAKATDEYELARKKVAAFIN---ASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~---~~~~~~v~~t~g~t  139 (368)
                      .+.+.|+.+.+. ++|+.+++++.+.+..  ...++..           ...++|++++++++   .++ ++|++|+|++
T Consensus        19 ~~~i~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~Y~~~-----------~~~~Lr~aia~~~~~~~~~~-~~i~it~Ga~   86 (335)
T PRK14808         19 RDRTYLALNENPFPFPEDLVDEVFRRLNSDTLRIYYDS-----------PDEELIEKILSYLDTDFLSK-NNVSVGNGAD   86 (335)
T ss_pred             CceeEecCCCCCCCCCHHHHHHHHHHhhhhhhhcCCCC-----------ChHHHHHHHHHHhCCCCCCc-ceEEEcCCHH
Confidence            578999999877 6788999998887643  1111211           23479999999998   544 4999999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEccccc
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISN  219 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n  219 (368)
                      +++..++.++        |.|++.+|+|+.    +...++..|++++.++.++++.++...    + .+++++++++|+|
T Consensus        87 ~~i~~~~~~~--------d~v~v~~P~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~~~----~-~~~~~i~i~nP~N  149 (335)
T PRK14808         87 EIIYVMMLMF--------DRSVFFPPTYSC----YRIFAKAVGAKFLEVPLTKDLRIPEVN----V-GEGDVVFIPNPNN  149 (335)
T ss_pred             HHHHHHHHHh--------CcEEECCCCHHH----HHHHHHHcCCeEEEecCCCcCCCChhH----c-cCCCEEEEeCCCC
Confidence            9999999865        569999996665    677778889999999998777665332    2 3568999999999


Q ss_pred             ccccccCHHHHHHHHHhcCCEEEEecCCcCCc--cccc-CCCCCccEEEecCcCcCCCCc--ceEEEEcccccccCCCcc
Q 017640          220 MLASILPIEEIVHWSHDVGAKVLVDACQSVPH--MVVD-VQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFL  294 (368)
Q Consensus       220 ~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~--~~~~-~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~~~~  294 (368)
                      |||.+++.+++.+++ +++++||+|++|..-.  .... +......+++.|+||.||.+|  +||+++++++++.+....
T Consensus       150 PTG~~~s~~~l~~l~-~~~~~ii~DE~Y~~f~~~~~~~~~~~~~~vi~~~S~SK~~~l~GlRvG~~v~~~~~~~~l~~~~  228 (335)
T PRK14808        150 PTGHVFEREEIERIL-KTGAFVALDEAYYEFHGESYVDLLKKYENLAVIRTFSKAFSLAAQRIGYVVSSEKFIDAYNRVR  228 (335)
T ss_pred             CCCCCcCHHHHHHHH-hcCCEEEEECchhhhcCCchHHHHHhCCCEEEEEechhhccCcccceEEEEeCHHHHHHHHHhc
Confidence            999999999999998 5899999999987211  1111 122346789999999999888  999999999887765433


Q ss_pred             cCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          295 GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       295 ~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      ..                       .+.+..+..++..+++....  .....++..+..+++.+.|.+.
T Consensus       229 ~~-----------------------~~~~~~~q~a~~~~l~~~~~--~~~~~~~~~~~r~~l~~~L~~~  272 (335)
T PRK14808        229 LP-----------------------FNVSYVSQMFAKVALDHREI--FEERTKFIVEERERMKSALREM  272 (335)
T ss_pred             CC-----------------------CCCCHHHHHHHHHHHhCHHH--HHHHHHHHHHHHHHHHHHHHHC
Confidence            11                       12344555555666653222  2333444555566777777664

>PLN02483 serine palmitoyltransferase

Probab=99.91  E-value=4.8e-22  Score=193.11  Aligned_cols=262  Identities=18%  Similarity=0.190  Sum_probs=184.2

Q ss_pred             CCeEEeccCCCC---CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHH
Q 017640           66 KKLVYLDNAATS---QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI  142 (368)
Q Consensus        66 ~~~i~l~~~~~~---~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~  142 (368)
                      .+.++|....+-   ..++...+++.+++..+.....  .....++..+..+++++.+|+++|.+  +.|++++| ..++
T Consensus       100 ~~~~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~--~sr~~~g~~~~~~ele~~lA~~~g~~--~ai~~~~G-~~an  174 (489)
T PLN02483        100 RRCLNLGSYNYLGFAAADEYCTPRVIESLKKYSASTC--SSRVDGGTTKLHRELEELVARFVGKP--AAIVFGMG-YATN  174 (489)
T ss_pred             ceEEEeecCCccCcCCCCHHHHHHHHHHHHHhCCCCC--ccccccCCcHHHHHHHHHHHHHhCCC--cEEEECCH-HHHH
Confidence            445666554432   2244556666666666533221  12222334677889999999999975  36777665 4566


Q ss_pred             HHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcc-------cCc-----e
Q 017640          143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS-------RKT-----K  210 (368)
Q Consensus       143 ~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~-------~~~-----~  210 (368)
                      ..++.++    +++||.|++.+++|++...    .++..|++++.++.+     |++++++.++       +++     +
T Consensus       175 ~~~i~al----~~~Gd~Vi~d~~~h~s~~~----~~~~~Ga~v~~~~~~-----d~~~le~~l~~~i~~~~p~t~~p~~k  241 (489)
T PLN02483        175 STIIPAL----IGKGGLIISDSLNHNSIVN----GARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTHRPWKK  241 (489)
T ss_pred             HHHHHHh----CCCCCEEEEcchhhHHHHH----HHHHcCCeEEEEeCC-----CHHHHHHHHHhhhhccccccccCCce
Confidence            6777777    8999999999999999654    356679999999975     5666665543       222     4


Q ss_pred             -EEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCccc---------ccCCCCCccEEEecCcCcCCCCcceEE
Q 017640          211 -LVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMV---------VDVQGLDADFLVASSHKMCGPTGIGFL  280 (368)
Q Consensus       211 -~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~---------~~~~~~~~d~~~~s~~K~~g~~G~G~l  280 (368)
                       +|++++..|++|.+.++++|.++|++||+++++|++|+.+...         +++...+.|++++|+||.||+.| ||+
T Consensus       242 ~livve~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~~G-G~i  320 (489)
T PLN02483        242 IIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGSCG-GYI  320 (489)
T ss_pred             EEEEECCCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhcccCc-eEE
Confidence             6677788899999999999999999999999999999865421         22333468999999999999887 999


Q ss_pred             EEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh-C---HHHHHHHHHHHHHHH
Q 017640          281 FGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-G---MQKIHAYEVKWIICS  356 (368)
Q Consensus       281 ~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~-g---~~~i~~~~~~l~~~l  356 (368)
                      ++++++++.++....+.                   ...++.+.....++.++++.+... +   .....++.+++.+++
T Consensus       321 ~~~~~li~~l~~~~~~~-------------------~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l  381 (489)
T PLN02483        321 AGSKELIQYLKRTCPAH-------------------LYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFF  381 (489)
T ss_pred             EcCHHHHHHHHHhCccc-------------------cccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHH
Confidence            99999988876543211                   112244555555667778877632 1   234467788889999


Q ss_pred             HHHHHhhcCC
Q 017640          357 IIVIQERHNT  366 (368)
Q Consensus       357 ~~~l~~~~g~  366 (368)
                      .+.|+++ |+
T Consensus       382 ~~~L~~~-G~  390 (489)
T PLN02483        382 RSELQKM-GF  390 (489)
T ss_pred             HHHHHHC-CC
Confidence            9999876 54

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=99.91  E-value=4.1e-23  Score=194.77  Aligned_cols=260  Identities=21%  Similarity=0.242  Sum_probs=181.1

Q ss_pred             CeEEeccCCCCCC-----cHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcC------CCCCCcEEEe
Q 017640           67 KLVYLDNAATSQK-----PIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN------ASDSGEIVFT  135 (368)
Q Consensus        67 ~~i~l~~~~~~~~-----~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------~~~~~~v~~t  135 (368)
                      ++|+|+.+.+...     ++.+.++..+.......       ...+.......++|++++++++      .+++.+|+++
T Consensus         2 ~~I~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~   74 (363)
T PF00155_consen    2 DVINLGSNAPLLLSQNPPPPAAIKAAIRGAATSSS-------FLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVT   74 (363)
T ss_dssp             TEEESSSSSTSSTTSSHHHHHHHHHHHHHHHHHTG-------CTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEE
T ss_pred             CEEEEECCCCCCcccccchHHHHHHHHHHhhcccc-------cccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEe
Confidence            4678888877643     34444444430111100       1111123345589999999998      3332389999


Q ss_pred             CCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC--CCCCCCHHHHHHhccc------
Q 017640          136 KNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDESPDLDKLKEMLSR------  207 (368)
Q Consensus       136 ~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~l~~------  207 (368)
                      +|+.+++..+...+   ..++|+.|++.+|.|+.    +...++..|++++.++++  .++.+|++.|++.+++      
T Consensus        75 ~G~~~~~~~~~~~~---~~~~~~~vlv~~P~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~  147 (363)
T PF00155_consen   75 SGAQAALFLLLRLL---KINPGDTVLVPDPCYPS----YIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGP  147 (363)
T ss_dssp             SHHHHHHHHHHHHH---HSSTTSEEEEEESSSTH----HHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTE
T ss_pred             cccccchhhhhhcc---cccccccceecCCcccc----ccccccccCceeeecccccccccccccccccccccccccccc
Confidence            99999988888776   25689999999998888    455566779999999965  5688899999999987      


Q ss_pred             CceEEEEcccccccccccCH---HHHHHHHHhcCCEEEEecCCcCCccc--------ccCCCCCccEEEecCcCcCCCCc
Q 017640          208 KTKLVVIHHISNMLASILPI---EEIVHWSHDVGAKVLVDACQSVPHMV--------VDVQGLDADFLVASSHKMCGPTG  276 (368)
Q Consensus       208 ~~~~v~~~~~~n~tG~~~~l---~~i~~l~~~~g~~li~D~a~~~~~~~--------~~~~~~~~d~~~~s~~K~~g~~G  276 (368)
                      ++++|++++++||||..++.   ++|+++|++||+++|+|++|......        ..++.....+++.|++|.||.+|
T Consensus       148 ~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G  227 (363)
T PF00155_consen  148 RPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPG  227 (363)
T ss_dssp             TEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGG
T ss_pred             ccceeeecccccccccccccccccchhhhhcccccceeeeeceeccccCCCccCcccccccccccceeeeeccccccccc
Confidence            57899999999999999995   45555599999999999999854332        12222223689999999999888


Q ss_pred             --ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh--CHHHHHHHHHHH
Q 017640          277 --IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI--GMQKIHAYEVKW  352 (368)
Q Consensus       277 --~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~--g~~~i~~~~~~l  352 (368)
                        +|++++++++++.++.....+                       ..+.....++...+......  -.++++++.++.
T Consensus       228 lRvG~i~~~~~~~~~l~~~~~~~-----------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~  284 (363)
T PF00155_consen  228 LRVGYIVAPPELIERLRRFQRSG-----------------------LSSSPMQAAAAAALSDPELVEKWLEELRERLREN  284 (363)
T ss_dssp             GTEEEEEEEHHHHHHHHHHHHHT-----------------------TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhhhhhhhhccccc-----------------------cccchhhHHHHHhhhcccccccccccchhhHHHH
Confidence              999999998888776443211                       12444444444444433321  357788888888


Q ss_pred             HHHHHHHHHhh
Q 017640          353 IICSIIVIQER  363 (368)
Q Consensus       353 ~~~l~~~l~~~  363 (368)
                      .+++.+.|.+.
T Consensus       285 ~~~l~~~L~~~  295 (363)
T PF00155_consen  285 RDLLREALEEI  295 (363)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            88999988776

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.91  E-value=1.3e-22  Score=193.78  Aligned_cols=161  Identities=19%  Similarity=0.296  Sum_probs=142.1

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEE
Q 017640          109 ATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL  188 (368)
Q Consensus       109 ~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v  188 (368)
                      ..+..+++++.+|++.|..   ..++++|+++|+.+++.++    +++||+|+++..+|.++...+...+++.|++++++
T Consensus        62 ~~p~~~~le~~lA~l~g~~---~av~~sSGt~Al~~al~~l----l~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~v  134 (433)
T PRK08134         62 SNPTVAVLEERVAALEGGV---GAIATASGQAALHLAIATL----MGAGSHIVASSALYGGSHNLLHYTLRRFGIETTFV  134 (433)
T ss_pred             cChHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHH----hCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEE
Confidence            3456778999999999986   3588999999999999988    88999999999999988777666667789999999


Q ss_pred             eCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecC
Q 017640          189 NLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASS  268 (368)
Q Consensus       189 ~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~  268 (368)
                      +.+     |+++++++|+++|++|++++++||+|.+.|+++|+++|++||+++++|++++.+.....+ .+++|+++.|.
T Consensus       135 d~~-----d~~~l~~~i~~~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~~~pl-~~GaD~vv~S~  208 (433)
T PRK08134        135 KPG-----DIDGWRAAIRPNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYLLRPF-EHGADLVYHSA  208 (433)
T ss_pred             CCC-----CHHHHHHhcCCCCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCcccccCCch-hcCCCEEEecc
Confidence            975     899999999999999999999999999999999999999999999999999988775444 67899999999


Q ss_pred             cCcCCCCc--ceEEEE
Q 017640          269 HKMCGPTG--IGFLFG  282 (368)
Q Consensus       269 ~K~~g~~G--~G~l~~  282 (368)
                      +|++|++|  +|.+++
T Consensus       209 tK~l~g~g~~~gG~v~  224 (433)
T PRK08134        209 TKFLGGHGTAIGGVLV  224 (433)
T ss_pred             ccccCCCCCceEEEEE
Confidence            99999888  454544

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.91  E-value=3.8e-23  Score=193.05  Aligned_cols=244  Identities=12%  Similarity=0.072  Sum_probs=173.7

Q ss_pred             CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCC
Q 017640           78 QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSG  157 (368)
Q Consensus        78 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~g  157 (368)
                      .+++.+++++.+.....      .    .+...+..+++++.+++++| +  +++++++|+|+++..++.++    +++|
T Consensus         9 ~~~~~v~~a~~~~~~~~------~----~~~~~~~~~~l~~~~a~~~g-~--~~~~~~~~gt~a~~~~~~~l----~~~g   71 (338)
T cd06502           9 GPTPEMLEAMAAANVGD------D----VYGEDPTTAKLEARAAELFG-K--EAALFVPSGTAANQLALAAH----TQPG   71 (338)
T ss_pred             CCCHHHHHHHHhcccCC------c----ccCCCHHHHHHHHHHHHHhC-C--CeEEEecCchHHHHHHHHHh----cCCC
Confidence            57888999887764321      0    01113456789999999999 3  37888888899999999988    7899


Q ss_pred             CEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc-------CceEEEEcccccccccccC---H
Q 017640          158 DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-------KTKLVVIHHISNMLASILP---I  227 (368)
Q Consensus       158 d~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~-------~~~~v~~~~~~n~tG~~~~---l  227 (368)
                      |+|+++++.|.+..... ..++..|++++.++.+. +.+|+++|++++++       ++++|++++++|+ |.+++   +
T Consensus        72 d~v~~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l  148 (338)
T cd06502          72 GSVICHETAHIYTDEAG-APEFLSGVKLLPVPGEN-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDEL  148 (338)
T ss_pred             CeEEEecCcceeeecCC-cHHHHcCceEEeecCCC-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHH
Confidence            99999999998765321 22344699999999754 77899999999975       6899999999997 55545   6


Q ss_pred             HHHHHHHHhcCCEEEEecCCcCCc-----ccccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCcceee
Q 017640          228 EEIVHWSHDVGAKVLVDACQSVPH-----MVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISD  302 (368)
Q Consensus       228 ~~i~~l~~~~g~~li~D~a~~~~~-----~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~  302 (368)
                      ++|.++|++||+++++|++|..+.     ..+.....+.|+++.|+||++|.+|.++++.++++++.+++....+     
T Consensus       149 ~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~g~~~~~~~~~~~~~~~~~~~~-----  223 (338)
T cd06502         149 KAISALAKENGLPLHLDGARLANAAAALGVALKTYKSGVDSVSFCLSKGGGAPVGAVVVGNRDFIARARRRRKQA-----  223 (338)
T ss_pred             HHHHHHHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcCCEEEEeccccCCCccceEEECCHHHHHHHHHHHHHh-----
Confidence            789999999999999999874221     1121112368899999999999777566677888888776543211     


Q ss_pred             cccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          303 VFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       303 ~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                                      .++.+..++. ...++..++..+.....++..++++++.+.|+++
T Consensus       224 ----------------~~~~~~~~~~-~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~  267 (338)
T cd06502         224 ----------------GGGMRQSGFL-AAAGLAALENDLWLRRLRHDHEMARRLAEALEEL  267 (338)
T ss_pred             ----------------CCChhhHHHH-HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhc
Confidence                            0122222222 2333344444345556678888889999999876

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.91  E-value=8.5e-23  Score=193.79  Aligned_cols=218  Identities=20%  Similarity=0.195  Sum_probs=163.6

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      .+..+.+++.++++.|.+.  . ++++|+++++.+++.++    +++||+|++..+.|.+....+...++..|.+++.++
T Consensus        59 ~p~~~~Le~~lA~l~g~~~--~-v~~~sG~~Ai~~~l~al----l~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~  131 (405)
T PRK08776         59 NPTRDLLGEALAELEGGAG--G-VITATGMGAINLVLNAL----LQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITAD  131 (405)
T ss_pred             ChHHHHHHHHHHHHhCCCc--e-EEEcCHHHHHHHHHHHH----hCCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEEC
Confidence            3445679999999999752  4 55666689999999988    899999999999999887777777777888998887


Q ss_pred             CCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCc
Q 017640          190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH  269 (368)
Q Consensus       190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~  269 (368)
                      ..     |+++|++++++++++|++++++||||.+.++++|.++|+++|+++++|++|+.+.....+ .++.|+++.|++
T Consensus       132 ~~-----d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~~~~pl-~~gaDivv~S~t  205 (405)
T PRK08776        132 LT-----DPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPALQKPL-EFGADLVLHSTT  205 (405)
T ss_pred             CC-----CHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcccccCCcc-cccCCEEEecCc
Confidence            64     889999999889999999999999999999999999999999999999999876542222 357899999999


Q ss_pred             CcCCCCc---ceEEEEc-ccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 017640          270 KMCGPTG---IGFLFGK-SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI  345 (368)
Q Consensus       270 K~~g~~G---~G~l~~~-~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i  345 (368)
                      |+++++|   .|+++++ +++.+++.....                     ....+.+......+...++   +  ++..
T Consensus       206 K~l~g~~~~~~G~vv~~~~~l~~~l~~~~~---------------------~~g~~~s~~~a~l~~~gl~---t--l~~r  259 (405)
T PRK08776        206 KYINGHSDVVGGAVVARDAELHQQLVWWAN---------------------ALGLTGSPFDAFLTLRGLR---T--LDAR  259 (405)
T ss_pred             eeecCCCCceEEEEEeCCHHHHHHHHHHHH---------------------hcCCCCCHHHHHHHHhhhC---c--HHHH
Confidence            9887554   6777775 445444432111                     0011233333333322332   2  4555


Q ss_pred             HHHHHHHHHHHHHHHHhhcCC
Q 017640          346 HAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       346 ~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      .++..+.+..+.++|++.+.+
T Consensus       260 ~~~~~~na~~la~~L~~~p~v  280 (405)
T PRK08776        260 LRVHQENADAIAALLDGHAAV  280 (405)
T ss_pred             HHHHHHHHHHHHHHHHcCCCe
Confidence            677888888888888877653

>PRK06855 aminotransferase; Validated

Probab=99.91  E-value=1.7e-22  Score=194.49  Aligned_cols=262  Identities=13%  Similarity=0.087  Sum_probs=174.9

Q ss_pred             CCeEEeccCCC---C-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----CCC-CCCcEEEeC
Q 017640           66 KKLVYLDNAAT---S-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS-DSGEIVFTK  136 (368)
Q Consensus        66 ~~~i~l~~~~~---~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~-~~~~v~~t~  136 (368)
                      ..++++..+.+   . ++|+.+.+++.+.+.....        .++.......++|+++++++    |.+ .+++|++|+
T Consensus        32 ~~~~~~~~G~p~~~~~~~p~~~~~a~~~~~~~~~~--------~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~  103 (433)
T PRK06855         32 VKITWENIGDPIAKGEKIPDWMKEIVAELVMDDKS--------YGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFN  103 (433)
T ss_pred             ccccccccCCCcccCCCCCHHHHHHHHHHhhcCCC--------CCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcC
Confidence            45677776665   3 6788888888876643100        01111223346777777776    432 235999999


Q ss_pred             CHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC--CCCCCHHHHHHhcc--cCceEE
Q 017640          137 NATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLS--RKTKLV  212 (368)
Q Consensus       137 g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~--~~~~~v  212 (368)
                      |+++++..++. +    +++||.|++.+|.|+... ..  .....|++++.+++++  ++.+|+++|++++.  ++++++
T Consensus       104 G~~~al~~~~~-l----~~~Gd~Vlv~~P~Y~~~~-~~--~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~i  175 (433)
T PRK06855        104 GLGDAIAKIYG-L----LRREARVIGPSPAYSTHS-SA--EAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYNPSIAGI  175 (433)
T ss_pred             cHHHHHHHHHH-h----cCCCCeEEEeCCCCchHH-HH--HHHhcCCeEEEEecccccCCCCCHHHHHHHHhcCCCceEE
Confidence            99999999985 6    789999999999998732 11  1223488889998874  36789999999986  357899


Q ss_pred             EEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCc------ccc-cCCCCCccEEEecCcCcCCCCc--ceEE
Q 017640          213 VIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH------MVV-DVQGLDADFLVASSHKMCGPTG--IGFL  280 (368)
Q Consensus       213 ~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~------~~~-~~~~~~~d~~~~s~~K~~g~~G--~G~l  280 (368)
                      ++++|+||||.+++   +++|+++|++||++||+|++|..-.      .++ .+...+..++++|+||.|+.+|  +||+
T Consensus       176 ~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRiG~i  255 (433)
T PRK06855        176 LLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGSRCGWI  255 (433)
T ss_pred             EEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccCCCcceEEEE
Confidence            99999999999999   6788889999999999999987221      111 1211124589999999999888  9999


Q ss_pred             EEcc--------cccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH--HHhCHHHHHHHHH
Q 017640          281 FGKS--------DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL--STIGMQKIHAYEV  350 (368)
Q Consensus       281 ~~~~--------~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~--~~~g~~~i~~~~~  350 (368)
                      ++++        ++++.+....                     .. ..+++...+.++..+++.-  ++ -++.++++.+
T Consensus       256 i~p~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~~Q~a~~~~l~~~~~~~-~~~~~~~~~~  312 (433)
T PRK06855        256 EVYNADKDEVFKKYINSILNAK---------------------MI-EVCSTTLPQMAIPRIMSHPEYKN-YLKERNKRYE  312 (433)
T ss_pred             EEeCCchhhHHHHHHHHHHHhh---------------------cc-ccCCChHHHHHHHHhhcCCcHHH-HHHHHHHHHH
Confidence            9742        1122221110                     00 1133445555555555321  11 2456667777


Q ss_pred             HHHHHHHHHHHhhcCC
Q 017640          351 KWIICSIIVIQERHNT  366 (368)
Q Consensus       351 ~l~~~l~~~l~~~~g~  366 (368)
                      +..+.+.+.|.+++|+
T Consensus       313 ~r~~~~~~~L~~~~~~  328 (433)
T PRK06855        313 KRSNIAYEKLKDVPGL  328 (433)
T ss_pred             HHHHHHHHHHhcCCCe
Confidence            7778888888765553

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.91  E-value=9.3e-23  Score=191.75  Aligned_cols=169  Identities=12%  Similarity=0.171  Sum_probs=142.5

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      .+....+++.++++.|.+   ++++++|+++|+..++.++    +++||+|+++++.|++....+....+..|+++..++
T Consensus        49 nPt~~~lE~~lA~l~g~~---~~~~~~sG~~Ai~~al~al----l~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d  121 (377)
T TIGR01324        49 TLTHFALQDAMCELEGGA---GCYLYPSGLAAVTNSILAF----VKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYD  121 (377)
T ss_pred             CccHHHHHHHHHHHhCCC---cEEEECcHHHHHHHHHHHh----cCCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEEC
Confidence            345568999999999975   7789999999999999988    899999999999998766544455567799988876


Q ss_pred             CCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCc
Q 017640          190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH  269 (368)
Q Consensus       190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~  269 (368)
                      ..     +.+.+++++++++++|++++++||+|.+.|+++|+++|+++|+++++|++|+.|.. .....++.|+++.|++
T Consensus       122 ~~-----~~e~l~~~i~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~-~~pl~~gaDivv~S~t  195 (377)
T TIGR01324       122 PL-----IGEDIATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLL-FKPLEHGVDISIQAGT  195 (377)
T ss_pred             CC-----CHHHHHHhcCCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccc-cCccccCceEEEecCc
Confidence            43     33789999999999999999999999999999999999999999999999998876 2333568999999999


Q ss_pred             CcCCCCc---ceEEEEcccccccCC
Q 017640          270 KMCGPTG---IGFLFGKSDLLSAMP  291 (368)
Q Consensus       270 K~~g~~G---~G~l~~~~~li~~l~  291 (368)
                      |++|+++   +|+++.+++.++.++
T Consensus       196 K~l~G~~d~~gG~v~~~~~~~~~l~  220 (377)
T TIGR01324       196 KYLVGHSDIMIGTVVANARTWDQLR  220 (377)
T ss_pred             eeccCCCCceEEEEEeCHHHHHHHH
Confidence            9876553   688888887766554

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=99.91  E-value=1.5e-22  Score=193.70  Aligned_cols=264  Identities=14%  Similarity=0.139  Sum_probs=172.1

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc------CCCCCCcEEEeCCH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI------NASDSGEIVFTKNA  138 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~------~~~~~~~v~~t~g~  138 (368)
                      ++++.|+.+... ++++.+.+++.+.+.........    .++.......++|+++++++      ++++ ++|++|+|+
T Consensus        34 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~-~~I~it~Ga  108 (409)
T PRK07590         34 AKIIRLGIGDVTQPLPPAVIEAMHKAVDEMGTAETF----RGYGPEQGYDFLREKIAENDYQARGCDISA-DEIFISDGA  108 (409)
T ss_pred             CceEEecCcCCCCCCCHHHHHHHHHHHhcccccCCc----cCCCCCCCCHHHHHHHHHHHHHhcCCcCCh-hhEEECCCH
Confidence            568899998877 56788888888887653111000    01111223346888888775      4445 499999999


Q ss_pred             HHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCE-----------EEEEeCCCC--CCCCHHHHHHhc
Q 017640          139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGAN-----------LKFLNLNDD--ESPDLDKLKEML  205 (368)
Q Consensus       139 t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~-----------v~~v~~~~~--~~~d~~~l~~~l  205 (368)
                      ++++.++. .+    +.+||+|++.+|+|+..    ...++..|.+           ++.++++++  +.+|++      
T Consensus       109 ~~al~~l~-~~----~~~gd~V~v~~P~Y~~~----~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~------  173 (409)
T PRK07590        109 KCDTGNIL-DI----FGPDNTIAVTDPVYPVY----VDTNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPELP------  173 (409)
T ss_pred             HHHHHHHH-Hh----cCCCCEEEEeCCCCcch----HHHHHHcCCcccccccccccceeEeecccccCCcccCc------
Confidence            99999864 44    67999999999988874    4445556876           888988643  333322      


Q ss_pred             ccCceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCC----ccc--c-cCCCC-CccEEEecCcCcCCC
Q 017640          206 SRKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVP----HMV--V-DVQGL-DADFLVASSHKMCGP  274 (368)
Q Consensus       206 ~~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~----~~~--~-~~~~~-~~d~~~~s~~K~~g~  274 (368)
                      .+++++|++++|+||||.+++   +++|+++|++||++||+|++|..-    ..+  + .++.. +..++++|+||.+|.
T Consensus       174 ~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~  253 (409)
T PRK07590        174 EEKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGF  253 (409)
T ss_pred             ccCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccCC
Confidence            257899999999999999999   668888899999999999998721    111  1 12211 346888999999998


Q ss_pred             Cc--ceEEEEcccccccCCCcc-----cCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Q 017640          275 TG--IGFLFGKSDLLSAMPPFL-----GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHA  347 (368)
Q Consensus       275 ~G--~G~l~~~~~li~~l~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~  347 (368)
                      +|  +||+++++++++.+....     .-+..              .......+.+...+.++..+++.....-++++++
T Consensus       254 pGlRiG~~i~~~~li~~~~~~~~~~~~~~~~~--------------~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~  319 (409)
T PRK07590        254 TGTRCAYTVVPKELKGKTSDGEGVSLNSLWNR--------------RQSTKFNGVSYIVQRAAEAVYSPEGKAQIKELID  319 (409)
T ss_pred             cCceeEEEEcCHHHhhhccccchhhhHHHHHH--------------HHhhcccCcCHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            88  999999998876331000     00000              0000011344455555555443111112455666


Q ss_pred             HHHHHHHHHHHHHHhh
Q 017640          348 YEVKWIICSIIVIQER  363 (368)
Q Consensus       348 ~~~~l~~~l~~~l~~~  363 (368)
                      +.++..+++.+.|.+.
T Consensus       320 ~~~~~r~~l~~~L~~~  335 (409)
T PRK07590        320 YYMENAKIIREGLESA  335 (409)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            6777777787877764

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.91  E-value=5.1e-22  Score=189.77  Aligned_cols=261  Identities=17%  Similarity=0.203  Sum_probs=184.3

Q ss_pred             CeEEeccCC-CC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHH
Q 017640           67 KLVYLDNAA-TS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL  144 (368)
Q Consensus        67 ~~i~l~~~~-~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~  144 (368)
                      .++.|..+. .+ ..+|.+++++.++++.+..++..  ...-.+..+...++++.+++++|.+   ..++++++++|+..
T Consensus        46 ~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~--s~~~~g~~~~~~~Le~~la~~~g~~---~~l~~~sG~~an~~  120 (402)
T TIGR01821        46 DVTVWCSNDYLGMGQHPEVLQAMHETLDKYGAGAGG--TRNISGTNIPHVELEAELADLHGKE---SALVFTSGYVANDA  120 (402)
T ss_pred             eEEEeEccCcCCCCCCHHHHHHHHHHHHHcCCCCcc--hhhhhCCcHHHHHHHHHHHHHhCCC---eEEEECchHHHHHH
Confidence            345555444 44 56888999999999886433221  1111223455678999999999964   44556666889999


Q ss_pred             HHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcc----cCceEEEEcccccc
Q 017640          145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS----RKTKLVVIHHISNM  220 (368)
Q Consensus       145 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~----~~~~~v~~~~~~n~  220 (368)
                      ++..+..  ..+++.|+.....|.+....+    +..|+++..++..     |++++++.++    +++++|++++++|+
T Consensus       121 ai~~l~~--~~~~~~v~~~~~~h~s~~~~~----~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~~~~v~~e~~~~~  189 (402)
T TIGR01821       121 TLATLAK--IIPGCVIFSDELNHASMIEGI----RHSGAEKFIFRHN-----DVAHLEKLLQSVDPNRPKIIAFESVYSM  189 (402)
T ss_pred             HHHHhhC--CCCCCEEEEcchHhHHHHHHH----HHcCCeEEEECCC-----CHHHHHHHHHhccCCCCeEEEEcCCCCC
Confidence            9887621  236777777766776654443    4457777666543     6777777775    25789999999999


Q ss_pred             cccccCHHHHHHHHHhcCCEEEEecCCcCCcc-c-----ccCCC--CCccEEEecCcCcCCCCcceEEEEcccccccCCC
Q 017640          221 LASILPIEEIVHWSHDVGAKVLVDACQSVPHM-V-----VDVQG--LDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPP  292 (368)
Q Consensus       221 tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~-~-----~~~~~--~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~  292 (368)
                      +|.+.|+++|.++|++||+++++|++|+.|.. +     .....  ..+|+++++++|.+|..| ||+++++++++.++.
T Consensus       190 ~G~~~~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G-G~i~~~~~~~~~l~~  268 (402)
T TIGR01821       190 DGDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVVG-GYIAASRKLIDAIRS  268 (402)
T ss_pred             CCCccCHHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhccCC-ceeecCHHHHHHHHH
Confidence            99999999999999999999999999996543 1     11111  246899999999999887 899889888776653


Q ss_pred             cccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          293 FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       293 ~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      ...+                  ..| .++.+....+++.++++.+.+.  +.++++..++.+++.+.|++. |+
T Consensus       269 ~~~~------------------~~~-t~~~~~~~~aaa~aaL~~~~~~--~~~~~~~~~~~~~l~~~L~~~-g~  320 (402)
T TIGR01821       269 YAPG------------------FIF-TTSLPPAIAAGATASIRHLKES--QDLRRAHQENVKRLKNLLEAL-GI  320 (402)
T ss_pred             hCcC------------------cee-cCcCCHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHHHHHc-CC
Confidence            2211                  011 2356666777788889988764  666777788999999998775 44

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.90  E-value=1.1e-22  Score=189.05  Aligned_cols=241  Identities=17%  Similarity=0.185  Sum_probs=172.4

Q ss_pred             CCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHH
Q 017640           66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV  145 (368)
Q Consensus        66 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~  145 (368)
                      ++.++|..+.++..++ ..+...   ..+..+|+          .. ..++|+.+++++|.+++ +|++|+|+++++..+
T Consensus        17 ~~~~~~~~~~~~~~~~-~~~~~~---~~~~~y~~----------~~-~~~lr~~la~~~~~~~~-~i~~t~G~~~~i~~~   80 (330)
T TIGR01140        17 EDWLDFSTGINPLGPP-VPPIPA---SAWARYPD----------PE-YDELRAAAAAYYGLPAA-SVLPVNGAQEAIYLL   80 (330)
T ss_pred             hheeEccccCCCCCCC-hhhcch---HHHhhCCC----------cc-HHHHHHHHHHHhCCChh-hEEECCCHHHHHHHH
Confidence            5678899887664433 222211   12212221          11 24899999999998754 999999999999997


Q ss_pred             HHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEccccccccccc
Q 017640          146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASIL  225 (368)
Q Consensus       146 ~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~  225 (368)
                      ..++     .+| .|++.+|+|..    +...++..|.+++.++       |++.+++.+ ++++++++++|+||||.++
T Consensus        81 ~~~l-----~~g-~vl~~~p~y~~----~~~~~~~~g~~~~~~~-------d~~~l~~~~-~~~~~v~i~~p~NPtG~~~  142 (330)
T TIGR01140        81 PRLL-----APG-RVLVLAPTYSE----YARAWRAAGHEVVELP-------DLDRLPAAL-EELDVLVLCNPNNPTGRLI  142 (330)
T ss_pred             HHHh-----CCC-eEEEeCCCcHH----HHHHHHHcCCEEEEeC-------CHHHHHhhc-ccCCEEEEeCCCCCCCCCC
Confidence            6654     567 69999997776    4455567799999887       789999988 4678999999999999999


Q ss_pred             C---HHHHHHHHHhcCCEEEEecCCcCCcccccC----CCCCccEEEecCcCcCCCCc--ceEEEEcccccccCCCcccC
Q 017640          226 P---IEEIVHWSHDVGAKVLVDACQSVPHMVVDV----QGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGG  296 (368)
Q Consensus       226 ~---l~~i~~l~~~~g~~li~D~a~~~~~~~~~~----~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~~~~~g  296 (368)
                      +   +++|+++|++||+++|+|++|.......++    +..+.+++++|+||.+|++|  +||+++++++++.+.+....
T Consensus       143 ~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~l~~~~~~  222 (330)
T TIGR01140       143 PPETLLALAARLRARGGWLVVDEAFIDFTPDASLAPQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHPALLARLREALGP  222 (330)
T ss_pred             CHHHHHHHHHHhHhcCCEEEEECcccccCCccchhhHhccCCCEEEEEecchhhcCchhhhhheeCCHHHHHHHHhcCCC
Confidence            9   667888889999999999998632221111    12356799999999999888  79999999988777654321


Q ss_pred             CcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          297 GEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG-MQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g-~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                                             .+.+..+..++...+   ++.+ .+.++++.+++.+++.+.|+++...
T Consensus       223 -----------------------~~~s~~~q~~~~~~l---~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  267 (330)
T TIGR01140       223 -----------------------WTVNGPARAAGRAAL---ADTAWQAATRARLAAERARLAALLARLGGL  267 (330)
T ss_pred             -----------------------CCchHHHHHHHHHHH---hchHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence                                   133444444444444   3322 3567788888889999988876433

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.90  E-value=3.8e-22  Score=191.07  Aligned_cols=261  Identities=20%  Similarity=0.229  Sum_probs=180.7

Q ss_pred             eEEeccC-CCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHH
Q 017640           68 LVYLDNA-ATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV  145 (368)
Q Consensus        68 ~i~l~~~-~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~  145 (368)
                      .+.+..+ ..+ ..++.+++++.+.+..+..+... . ..-++..+...++++.+++++|.+  +.+++++| ++++..+
T Consensus        48 ~~~~~sn~yl~l~~~p~v~~a~~~~~~~~~~~~~~-s-~~~~~~~~~~~~Le~~la~~~g~~--~~i~~~sG-~~a~~~~  122 (410)
T PRK13392         48 VTIWCSNDYLGMGQHPDVIGAMVDALDRYGAGAGG-T-RNISGTSHPHVLLERELADLHGKE--SALLFTSG-YVSNDAA  122 (410)
T ss_pred             EEEEECCCccCCCCCHHHHHHHHHHHHHcCCCCch-h-hhcccChHHHHHHHHHHHHHhCCC--CEEEECcH-HHHHHHH
Confidence            3444444 444 46889999999988876433221 1 111122334668999999999964  35666665 6788888


Q ss_pred             HHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcc----cCceEEEEccccccc
Q 017640          146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS----RKTKLVVIHHISNML  221 (368)
Q Consensus       146 ~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~----~~~~~v~~~~~~n~t  221 (368)
                      +..+.  ...+|+.|++....|.+.+.    .++..|++++.++.+     |.+.+++.+.    +++++|++++++|||
T Consensus       123 i~~l~--~~~~g~~vi~~~~~h~s~~~----~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~t~~v~i~~~~n~t  191 (410)
T PRK13392        123 LSTLG--KLLPGCVILSDALNHASMIE----GIRRSGAEKQVFRHN-----DLADLEEQLASVDPDRPKLIAFESVYSMD  191 (410)
T ss_pred             HHHHh--cCCCCCEEEEehhhhHHHHH----HHHHcCCeEEEEeCC-----CHHHHHHHHHhccCCCCEEEEEeCCCCCC
Confidence            87662  13578988888777877543    345568888777643     4555555543    478999999999999


Q ss_pred             ccccCHHHHHHHHHhcCCEEEEecCCcCCcccc------cCC--CCCccEEEecCcCcCCCCcceEEEEcccccccCCCc
Q 017640          222 ASILPIEEIVHWSHDVGAKVLVDACQSVPHMVV------DVQ--GLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPF  293 (368)
Q Consensus       222 G~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~------~~~--~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~  293 (368)
                      |.+.|+++|.++|++||+++++|++|+.|....      ...  ..++|++++|++|.||..| ||+++++++++.++..
T Consensus       192 G~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~G-G~~~~~~~~~~~l~~~  270 (410)
T PRK13392        192 GDIAPIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCLG-GYIAASADLIDFVRSF  270 (410)
T ss_pred             cccccHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhccc-chhhcCHHHHHHHHHh
Confidence            999999999999999999999999999654311      001  1146899999999999887 8998888888765533


Q ss_pred             ccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          294 LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       294 ~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      ..++                  .+ ..+.+....+++.++++.+...  ...+++..+..+++.+.|.+. |++
T Consensus       271 ~~~~------------------~~-s~~~~~~~~~a~~aaL~~~~~~--~~~~~~~~~~~~~l~~~L~~~-g~~  322 (410)
T PRK13392        271 APGF------------------IF-TTALPPAVAAGATAAIRHLKTS--QTERDAHQDRVAALKAKLNAN-GIP  322 (410)
T ss_pred             Ccch------------------hc-cCcCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHc-CCC
Confidence            2211                  11 1234556677788888877653  345577788888888888875 443

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=99.90  E-value=6.1e-22  Score=186.54  Aligned_cols=221  Identities=17%  Similarity=0.113  Sum_probs=159.3

Q ss_pred             HHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCC-CEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC
Q 017640          114 ELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSG-DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND  192 (368)
Q Consensus       114 ~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~g-d~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~  192 (368)
                      .++|+++++++|++++ +|++|+|+++++.+++.++    +.+| +.|++++|.|.    .+...++..|++++.++++.
T Consensus        62 ~~lr~~ia~~~~~~~~-~I~~t~G~~~~l~~~~~~~----~~~g~~~vlv~~p~y~----~~~~~~~~~g~~~~~v~~~~  132 (364)
T PRK04781         62 PGLRSALAALYGCAPE-QLLIGRGSDEAIDLLVRAL----CVPGRDAVLVTPPVFG----MYAVCARLQNAPLVEVPLVD  132 (364)
T ss_pred             HHHHHHHHHHhCcChH-HEEEeCCHHHHHHHHHHHh----cCCCCCeEEEcCCChH----HHHHHHHHcCCEEEEEecCC
Confidence            4899999999999764 9999999999999999988    7788 79999999654    35556677799999999842


Q ss_pred             ---CCCCCHHHHHHhc-ccCceEEEEcccccccccccCHHHHHHHHHh--cCCEEEEecCCcCCcc---ccc-CCCCCcc
Q 017640          193 ---DESPDLDKLKEML-SRKTKLVVIHHISNMLASILPIEEIVHWSHD--VGAKVLVDACQSVPHM---VVD-VQGLDAD  262 (368)
Q Consensus       193 ---~~~~d~~~l~~~l-~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~--~g~~li~D~a~~~~~~---~~~-~~~~~~d  262 (368)
                         ++.+|++++++.+ .+++++|++++++||||.++|.+++.++++.  +++++|+|++|..-..   ... ....+..
T Consensus       133 ~~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~~~~~~~~~~~~~v  212 (364)
T PRK04781        133 GADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSDVPSAVGLLARYDNL  212 (364)
T ss_pred             CccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcCCcchHHHHhhCCCE
Confidence               2467888876544 6788999999999999999998888777764  4789999999872211   111 1223467


Q ss_pred             EEEecCcCcCCCCc--ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 017640          263 FLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI  340 (368)
Q Consensus       263 ~~~~s~~K~~g~~G--~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~  340 (368)
                      +++.|+||.||.+|  +||+++++++++.+......+                       ..+.....++..+++.-...
T Consensus       213 i~~~SfSK~~gl~GlRvGy~v~~~~l~~~l~~~~~~~-----------------------~~~~~~~~~a~~~l~~~~~~  269 (364)
T PRK04781        213 AVLRTLSKAHALAAARIGSLIANAELIAVLRRCQAPY-----------------------PVPTPCAALAEQALSAPALA  269 (364)
T ss_pred             EEEecChhhcccccceeeeeeCCHHHHHHHHhccCCC-----------------------CCCHHHHHHHHHHHhcccHH
Confidence            88999999999888  999999999988776443211                       22333333333333321000


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          341 GMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       341 g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      -.....++.++.++.+.+.|++.+|+
T Consensus       270 ~~~~~~~~~~~~r~~l~~~L~~~~~~  295 (364)
T PRK04781        270 VTARRVAEVRAERERLHAALAQLPGV  295 (364)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            12233344566777888888776553

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.90  E-value=6.1e-23  Score=194.38  Aligned_cols=218  Identities=17%  Similarity=0.188  Sum_probs=165.5

Q ss_pred             HHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeC
Q 017640          111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL  190 (368)
Q Consensus       111 ~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~  190 (368)
                      +..+++++.+++++|.+   ..++++|++.|+..++.++    +++||+|+++.+.|.+.+..+...++..|+++..++.
T Consensus        61 pt~~~Le~~lA~l~G~~---~al~~~sG~~Ai~~~l~al----~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~~  133 (386)
T PRK06767         61 PTVKLFEERMAVLEGGE---EALAFGSGMAAISATLIGF----LKAGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDM  133 (386)
T ss_pred             cchHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHH----hCCCCEEEEcCCcHHHHHHHHHHHHhhcCeEEEEeCC
Confidence            44568999999999975   3455566678999999888    8999999999999998887777777777888777765


Q ss_pred             CCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcC
Q 017640          191 NDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK  270 (368)
Q Consensus       191 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K  270 (368)
                      .     |++++++++++++++|++++++||||.+.|+++|.++|+++|+++++|++|+.+....++ ..+.|+++.|++|
T Consensus       134 ~-----d~~~l~~~i~~~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~pl-~~g~Div~~S~sK  207 (386)
T PRK06767        134 E-----TEADIENKIRPNTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYLQRPL-ELGCDAVVHSATK  207 (386)
T ss_pred             C-----CHHHHHHhhCcCceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCcccccCCch-hcCCcEEEecCcc
Confidence            4     889999999999999999999999999999999999999999999999999866543333 3578999999999


Q ss_pred             cCCCCc---ceEEEEcccccccCC-CcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHH
Q 017640          271 MCGPTG---IGFLFGKSDLLSAMP-PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIH  346 (368)
Q Consensus       271 ~~g~~G---~G~l~~~~~li~~l~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~  346 (368)
                      +++++|   +|+++++++.++.+. ......+                     +..+....+   .++.-++.  +....
T Consensus       208 ~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~g---------------------~~~~~~~a~---l~~~~L~t--l~~r~  261 (386)
T PRK06767        208 YIGGHGDVVAGVTICKTRALAEKIRPMRKDIG---------------------GIMAPFDAW---LLLRGLKT--LAVRM  261 (386)
T ss_pred             eecCCCCceeEEEEeChHHHHHHHHHHHHHhC---------------------CCCCHHHHH---HHHcCCCc--HHHHH
Confidence            888776   599999988776543 2211110                     111211111   12222222  34445


Q ss_pred             HHHHHHHHHHHHHHHhhcCCC
Q 017640          347 AYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       347 ~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      ++.++++.++.++|.++++++
T Consensus       262 ~~~~~~a~~la~~L~~~p~v~  282 (386)
T PRK06767        262 DRHCDNAEKIVSFLKNHDAVE  282 (386)
T ss_pred             HHHHHHHHHHHHHHHcCCCcc
Confidence            677888999999999988764

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=99.90  E-value=3.7e-22  Score=188.29  Aligned_cols=247  Identities=17%  Similarity=0.193  Sum_probs=166.4

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----CCC--CCCcEEEeCCH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS--DSGEIVFTKNA  138 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~--~~~~v~~t~g~  138 (368)
                      ++++.|+.+.+. +.++.+.+++.+.... ..++.          .....++|+++++++    |.+  ++++|++|+|+
T Consensus        27 ~~~i~l~~~~p~~~~~~~~~~~~~~~~~~-~~Y~~----------~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~   95 (364)
T PRK07865         27 DGIVDLSVGTPVDPVPPVIQEALAAAADA-PGYPT----------TAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGS   95 (364)
T ss_pred             CCEEEcCCCCCCCCCCHHHHHHHHHHHhh-CCCCC----------ccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccCh
Confidence            457888887654 4567788887665432 11111          111225666666665    532  22499999999


Q ss_pred             HHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccc
Q 017640          139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHIS  218 (368)
Q Consensus       139 t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~  218 (368)
                      ++++..++..+   .+++||.|++++|.|+..    ...++..|++++.++       ++++++   ..++++|++++++
T Consensus        96 ~~~i~~~~~~l---~~~~gd~Vl~~~p~y~~~----~~~~~~~g~~~~~~~-------~~~~l~---~~~~~~v~~~~p~  158 (364)
T PRK07865         96 KELVAWLPTLL---GLGPGDVVVIPELAYPTY----EVGARLAGATVVRAD-------SLTELG---PQRPALIWLNSPS  158 (364)
T ss_pred             HHHHHHHHHHH---cCCCCCEEEECCCCcccH----HHHHHhcCCEEEecC-------ChhhCC---cccceEEEEcCCC
Confidence            99999987766   368999999999988874    444556799988875       233332   2578999999999


Q ss_pred             cccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc---ccc-CC------CCCccEEEecCcCcCCCCc--ceEEEEc
Q 017640          219 NMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVD-VQ------GLDADFLVASSHKMCGPTG--IGFLFGK  283 (368)
Q Consensus       219 n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~---~~~-~~------~~~~d~~~~s~~K~~g~~G--~G~l~~~  283 (368)
                      ||||.+++   +++|.++|++||+++|+|++|..-..   ++. +.      ..+..++++|+||.||.+|  +||++.+
T Consensus       159 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~~  238 (364)
T PRK07865        159 NPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAGD  238 (364)
T ss_pred             CCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCCceeeEEEecC
Confidence            99999999   57888899999999999999883211   111 10      1235699999999998888  9999999


Q ss_pred             ccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          284 SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       284 ~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +++++.++.....                     ...+.+.....++..+++..  .-.+..+++..+..+.+.+.|++.
T Consensus       239 ~~~~~~~~~~~~~---------------------~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~  295 (364)
T PRK07865        239 PALVAELLEVRKH---------------------AGMMVPAPVQAAMVAALGDD--AHVREQRERYARRRAVLRPALEAA  295 (364)
T ss_pred             HHHHHHHHHHHHh---------------------cCCCcCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHc
Confidence            9988776533210                     00123444444444444421  124566667777778888888763

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=99.90  E-value=1.4e-22  Score=193.61  Aligned_cols=203  Identities=20%  Similarity=0.289  Sum_probs=149.4

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEeCCHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI---NASDSGEIVFTKNATEA  141 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~---~~~~~~~v~~t~g~t~a  141 (368)
                      ++++.|+.+... ++++.+.+++.+.+.+......    ..++.......++|+++++++   +.++ ++|++|+|++++
T Consensus        33 ~~~i~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~Y~p~~g~~~lr~aia~~~~~~~~~~-d~I~it~Ga~~a  107 (402)
T TIGR03542        33 ADIIRLGIGDTTQPLPASVIEAFHNAVDELASEET----FRGYGPEQGYPFLREAIAENDYRGRIDP-EEIFISDGAKCD  107 (402)
T ss_pred             CCeEEcCCCCCCCCCCHHHHHHHHHHHhccccccc----ccCCCCCCCCHHHHHHHHHHHHhcCCCH-HHEEECCCcHHH
Confidence            578999998877 5788889999888765311100    001111233447889999876   5555 499999999999


Q ss_pred             HHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCC-----------EEEEEeCCCC--CCCCHHHHHHhcccC
Q 017640          142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGA-----------NLKFLNLNDD--ESPDLDKLKEMLSRK  208 (368)
Q Consensus       142 ~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~-----------~v~~v~~~~~--~~~d~~~l~~~l~~~  208 (368)
                      +..+. .+    +.+||.|++.+|+|+.    +...++..|+           +++.++.+++  +.+|+.   +  .++
T Consensus       108 l~~l~-~l----~~~gd~Vlv~~P~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~--~~~  173 (402)
T TIGR03542       108 VFRLQ-SL----FGSDNTVAVQDPVYPA----YVDSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLP---E--EPK  173 (402)
T ss_pred             HHHHH-Hh----cCCCCEEEEeCCCCcc----hHHHHHHcCCccccccccccceEEEeecchhhCCCCCcc---c--cCC
Confidence            99864 45    5789999999998887    4455566788           9999998643  333332   1  146


Q ss_pred             ceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCc----cccc---CCC-CCccEEEecCcCcCCCCc-
Q 017640          209 TKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----MVVD---VQG-LDADFLVASSHKMCGPTG-  276 (368)
Q Consensus       209 ~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~----~~~~---~~~-~~~d~~~~s~~K~~g~~G-  276 (368)
                      +++|++++++||||.+++   +++|+++|++||++||+|++|..-.    .+..   ++. .+..++++|+||.||.+| 
T Consensus       174 ~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pGl  253 (402)
T TIGR03542       174 IDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTGV  253 (402)
T ss_pred             ceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCCCc
Confidence            899999999999999999   7889999999999999999987311    1111   121 134678899999999888 


Q ss_pred             -ceEEEEccccc
Q 017640          277 -IGFLFGKSDLL  287 (368)
Q Consensus       277 -~G~l~~~~~li  287 (368)
                       +||++++++++
T Consensus       254 RiG~~i~~~~l~  265 (402)
T TIGR03542       254 RLGWTVVPKELT  265 (402)
T ss_pred             ceEEEEecHHHh
Confidence             99999998876

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=99.90  E-value=5.9e-22  Score=188.98  Aligned_cols=277  Identities=19%  Similarity=0.153  Sum_probs=210.8

Q ss_pred             eEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHH
Q 017640           68 LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAY  147 (368)
Q Consensus        68 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~  147 (368)
                      ..+.-......+++...+.+..++.....++     ...+...+..+++-..++++++.+......||+|+|+++.+++.
T Consensus        63 ~~~~~~~~~~~~~~~a~~~~~~~~~~nl~d~-----~~~p~a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~  137 (460)
T COG0076          63 RANLAGFCPTRVPPVAAELLVSALNKNLGDP-----DESPAAAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALL  137 (460)
T ss_pred             ceEEEccCCCCCHHHHHHHHHHHHhhcCCCc-----ccChhHHHHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHH
Confidence            3444444555677777777777766533322     23345678888899999999999755477999999999999888


Q ss_pred             HccCCCC----CCC------CEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC-CCCCCHHHHHHhcccCceE--EEE
Q 017640          148 SWGLSNL----KSG------DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKL--VVI  214 (368)
Q Consensus       148 ~~~~~~~----~~g------d~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~l~~~~~~--v~~  214 (368)
                      +.+....    ..+      -+|+++...|+|    +.+.+...|.+++.++.++ +..+|++++++++++++..  |+.
T Consensus       138 aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s----~~Kaa~~lG~~~~~v~~~~~~~~id~~~l~~~i~~~t~~g~vV~  213 (460)
T COG0076         138 AARERWRKRALAESGKPGGKPNIVCSETAHFS----FEKAARYLGLGLRRVPTVPTDYRIDVDALEEAIDENTIGGVVVG  213 (460)
T ss_pred             HHHHHHHHHhhhcccccCCCCeEEecCcchhH----HHHHHHHhCCCceeEEeccCccccCHHHHHHHHHhhccCceEEE
Confidence            7532211    101      169999998888    6777788899999999988 7999999999999998766  999


Q ss_pred             cccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccc-------cCCCCCccEEEecCcC-cCCCCcceEEEEccc-
Q 017640          215 HHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVV-------DVQGLDADFLVASSHK-MCGPTGIGFLFGKSD-  285 (368)
Q Consensus       215 ~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~-------~~~~~~~d~~~~s~~K-~~g~~G~G~l~~~~~-  285 (368)
                      +..+++||.+.|+++|+++|+++++++++|+|++....++       ++...++|.++.|+|| .+.|.|+|+++++++ 
T Consensus       214 ~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~e  293 (460)
T COG0076         214 TAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEE  293 (460)
T ss_pred             EecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCccchhhcCCCCceEEEECcccccCCCCCceEEEEECHH
Confidence            9999999999999999999999999999999999655533       2222368999999999 567999999999987 


Q ss_pred             -ccccCC---CcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Q 017640          286 -LLSAMP---PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQ  361 (368)
Q Consensus       286 -li~~l~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~  361 (368)
                       +.+.+.   ++..|+ ...             .--..++.+....+++...+..+...|..++.+++.++++++.+.|.
T Consensus       294 ~l~~~~~~~~~yl~~~-~~~-------------~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~  359 (460)
T COG0076         294 ALRRILIFADYYLPGG-GIP-------------NFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELE  359 (460)
T ss_pred             HhhhhhhcccccCCCC-CcC-------------ceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHH
Confidence             332222   222221 110             11124466666788888888988777999999999999999999999


Q ss_pred             hhcCCC
Q 017640          362 ERHNTT  367 (368)
Q Consensus       362 ~~~g~t  367 (368)
                      +...+.
T Consensus       360 ~~~~~e  365 (460)
T COG0076         360 KLGDFE  365 (460)
T ss_pred             hCCCcE
Confidence            885443

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=99.90  E-value=1.3e-22  Score=191.61  Aligned_cols=218  Identities=20%  Similarity=0.265  Sum_probs=164.1

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      .+..+.+++++|++.|.+   ++++++|+++++..++.++    +++||+|+++++.|++.+..+....+..+.++..++
T Consensus        51 ~pt~~~L~~~lA~l~g~~---~~i~~~sg~~Ai~~~l~~l----~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd  123 (386)
T PRK08045         51 NPTRDVVQRALAELEGGA---GAVLTNTGMSAIHLVTTVF----LKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD  123 (386)
T ss_pred             CccHHHHHHHHHHHhCCC---eEEEECCHHHHHHHHHHHH----cCCCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEeC
Confidence            344568999999999953   6899999999999999988    899999999999999887777777666666777765


Q ss_pred             CCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCc
Q 017640          190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH  269 (368)
Q Consensus       190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~  269 (368)
                      .     .|++++++++++++++|++++++||||.+.|+++|.++|+++|+++++|++|+.+.....+ ..+.|+++.|++
T Consensus       124 ~-----~d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~~~pl-~~gaDivv~S~t  197 (386)
T PRK08045        124 Q-----GDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQNPL-ALGADLVLHSCT  197 (386)
T ss_pred             C-----CCHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCCch-hhCCCEEEeecc
Confidence            2     4899999999989999999999999999999999999999999999999999877543222 457899999999


Q ss_pred             CcCC-CCc--ceEEEEc-ccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 017640          270 KMCG-PTG--IGFLFGK-SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI  345 (368)
Q Consensus       270 K~~g-~~G--~G~l~~~-~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i  345 (368)
                      |+++ +.+  .|+++++ +++++.++....                    .. ..+.+......+   +.-++.  +...
T Consensus       198 K~l~G~~d~~~G~vi~~~~~~~~~l~~~~~--------------------~~-g~~~~p~~~~l~---~rgl~t--l~~R  251 (386)
T PRK08045        198 KYLNGHSDVVAGVVIAKDPDVVTELAWWAN--------------------NI-GVTGGAFDSYLL---LRGLRT--LVPR  251 (386)
T ss_pred             eeccCCCCceeEEEEeCcHHHHHHHHHHHH--------------------hc-CCCCCHHHHHHH---Hhhhcc--HHHH
Confidence            9775 444  7877774 555554432211                    01 112222222222   222232  4555


Q ss_pred             HHHHHHHHHHHHHHHHhhcCC
Q 017640          346 HAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       346 ~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      .++..+.+..+.++|++++.+
T Consensus       252 ~~~~~~na~~la~~L~~~p~v  272 (386)
T PRK08045        252 MELAQRNAQAIVKYLQTQPLV  272 (386)
T ss_pred             HHHHHHHHHHHHHHHHcCCCE
Confidence            677778888888888877653

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=99.90  E-value=1.4e-22  Score=192.45  Aligned_cols=218  Identities=18%  Similarity=0.199  Sum_probs=168.2

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      .+..+++++.++++.|.+   +.+++++++.|+..++.++    +++||+|+++...|.+.+..+...++..|+++++++
T Consensus        69 ~p~~~~le~~lA~l~g~~---~al~~~sG~~Ai~~~l~al----l~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd  141 (403)
T PRK07810         69 NPTVSMFEERLRLIEGAE---ACFATASGMSAVFTALGAL----LGAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVD  141 (403)
T ss_pred             CchHHHHHHHHHHHhCCC---cEEEECChHHHHHHHHHHH----hCCCCEEEEccCCcchHHHHHHHHHHHcCcEEEEEC
Confidence            344668999999999976   5678888889999999888    899999999998888888878888888899999998


Q ss_pred             CCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCc
Q 017640          190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH  269 (368)
Q Consensus       190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~  269 (368)
                      ..     |++++++++++++++|++++++||+|.+.|+++|.++|+++|+++++|++|+.+.....+ ..+.|+++.|++
T Consensus       142 ~~-----d~~~l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~~~-~~gaDivv~S~t  215 (403)
T PRK07810        142 GE-----DLSQWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQRGL-PLGADVVVYSGT  215 (403)
T ss_pred             CC-----CHHHHHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCccccCChh-hcCCcEEEccCC
Confidence            64     899999999999999999999999999999999999999999999999999977552222 457999999999


Q ss_pred             CcCCCCc---ceEEEEcccccc-cCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 017640          270 KMCGPTG---IGFLFGKSDLLS-AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI  345 (368)
Q Consensus       270 K~~g~~G---~G~l~~~~~li~-~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i  345 (368)
                      |++++.|   .|+++.+++.+. .++......                     ..+.+....+.   ++.-++.  +...
T Consensus       216 K~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~---------------------g~~~s~~~a~l---~l~~L~t--l~~R  269 (403)
T PRK07810        216 KHIDGQGRVLGGAILGDREYIDGPVQKLMRHT---------------------GPALSAFNAWV---LLKGLET--LALR  269 (403)
T ss_pred             ceecCCcCceeEEEEeChHHHHHHHHHHHHHh---------------------CCCCCHHHHHH---HHhccCc--HHHH
Confidence            9988777   688888887654 233221100                     11222222222   2333333  4455


Q ss_pred             HHHHHHHHHHHHHHHHhhcCC
Q 017640          346 HAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       346 ~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      .++..+.+..+.++|++++++
T Consensus       270 ~~~~~~~a~~~a~~L~~~p~v  290 (403)
T PRK07810        270 VRHSNASALRIAEFLEGHPAV  290 (403)
T ss_pred             HHHHHHHHHHHHHHHhcCCCc
Confidence            566777777778888877764

>PRK06234 methionine gamma-lyase; Provisional

Probab=99.90  E-value=1.9e-22  Score=191.65  Aligned_cols=169  Identities=22%  Similarity=0.318  Sum_probs=146.3

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      .....+++++++++.|.+   ++++++|+++|+..++.++    +++||+|+++++.|.+.+..+...++..|+++++++
T Consensus        63 ~p~~~~Le~~iA~~~g~~---~~l~~~sG~~Ai~~al~~l----l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd  135 (400)
T PRK06234         63 NPTSTEVENKLALLEGGE---AAVVAASGMGAISSSLWSA----LKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVD  135 (400)
T ss_pred             CccHHHHHHHHHHHhCCC---cEEEEcCHHHHHHHHHHHH----hCCCCEEEEecCccchHHHHHHHHHhhCCeEEEEEC
Confidence            344568999999999974   5688888889999999887    899999999999999888777777788899999998


Q ss_pred             CCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhc--CCEEEEecCCcCCcccccCCCCCccEEEec
Q 017640          190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDV--GAKVLVDACQSVPHMVVDVQGLDADFLVAS  267 (368)
Q Consensus       190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~--g~~li~D~a~~~~~~~~~~~~~~~d~~~~s  267 (368)
                      ..     |++++++++++++++|++++++||||.+.|+++|.++|+++  |+++++|++|+.+.....+ ..+.|+++.|
T Consensus       136 ~~-----d~e~l~~~i~~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~~~l-~~g~Divv~S  209 (400)
T PRK06234        136 TS-----NLEEVRNALKANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQRPL-QLGADVVVHS  209 (400)
T ss_pred             CC-----CHHHHHHHhccCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcCCch-hhCCcEEEee
Confidence            75     89999999999999999999999999999999999999997  9999999999876542222 3478999999


Q ss_pred             CcCcCCCCc---ceEEEEcccccccCC
Q 017640          268 SHKMCGPTG---IGFLFGKSDLLSAMP  291 (368)
Q Consensus       268 ~~K~~g~~G---~G~l~~~~~li~~l~  291 (368)
                      ++|+++++|   +|++++++++++.++
T Consensus       210 ~sK~l~g~g~~~gG~v~~~~~~~~~l~  236 (400)
T PRK06234        210 ATKYLNGHGDVIAGFVVGKEEFINQVK  236 (400)
T ss_pred             ccccccCCCCceeEEEEecHHHHHHHH
Confidence            999988776   599999988877654

>PLN02672 methionine S-methyltransferase

Probab=99.90  E-value=1.5e-21  Score=199.87  Aligned_cols=258  Identities=16%  Similarity=0.137  Sum_probs=187.4

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCC--CcEEEeCCHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDS--GEIVFTKNATEAI  142 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~--~~v~~t~g~t~a~  142 (368)
                      ++++.|+.+.+. ++|+.+++++.+.+.....  .       .+..+..+.+++++++.+|.+.+  ++|++++|+++++
T Consensus       697 ~~vI~LsinE~d~ppPp~V~eAi~eal~~~~~--s-------~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL  767 (1082)
T PLN02672        697 SSLIHMDVDESFLPVPSAVKASIFESFVRQNI--S-------ESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALF  767 (1082)
T ss_pred             CCEEEEeCCCCCCCCCHHHHHHHHHHHhhcCC--C-------CCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHH
Confidence            678999999888 7889999999887754211  0       11134467899999999888743  4899999999999


Q ss_pred             HHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC--CCCCCHHHHHHhccc-CceEEEEcccc-
Q 017640          143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSR-KTKLVVIHHIS-  218 (368)
Q Consensus       143 ~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~-~~~~v~~~~~~-  218 (368)
                      ..++.++    +++||.|++.+|.|+.    +...++..|++++.+++++  ++.+|++.|++++++ +.+.|++++|+ 
T Consensus       768 ~lll~aL----l~pGD~VLVp~PtY~~----Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~~~~~I~L~nPnh  839 (1082)
T PLN02672        768 NKLVLCC----VQEGGTLCFPAGSNGT----YVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETVKKPWVYISGPTI  839 (1082)
T ss_pred             HHHHHHH----cCCCCEEEEeCCChHH----HHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCCEEEEECcCC
Confidence            9999988    8999999999996666    5666777899999999973  478899999999976 34688889986 


Q ss_pred             cccccccC---HHHHHHHHHhcCCEEEEecCCcC----Ccc--cccC-------CC---CCccEEEecCcCcCCCCc--c
Q 017640          219 NMLASILP---IEEIVHWSHDVGAKVLVDACQSV----PHM--VVDV-------QG---LDADFLVASSHKMCGPTG--I  277 (368)
Q Consensus       219 n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~----~~~--~~~~-------~~---~~~d~~~~s~~K~~g~~G--~  277 (368)
                      ||||.+++   +++|+++|++||++||+|++|+.    +..  ..++       ..   ....++++|+||.|+.+|  +
T Consensus       840 NPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLRI  919 (1082)
T PLN02672        840 NPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGHEF  919 (1082)
T ss_pred             CCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHHHHh
Confidence            99999999   77888899999999999999971    110  0111       11   114578889999999999  9


Q ss_pred             eEEEEccc-ccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH------hCHHHHHHHHH
Q 017640          278 GFLFGKSD-LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST------IGMQKIHAYEV  350 (368)
Q Consensus       278 G~l~~~~~-li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~------~g~~~i~~~~~  350 (368)
                      ||++++++ +++.+.....                     .  ..+......++..++..+..      ..+...++..+
T Consensus       920 GylIap~~eLi~~l~~~~~---------------------~--s~~~~~~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk  976 (1082)
T PLN02672        920 GFLALNDSVLIDAFHSAPG---------------------L--SRPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQKKILK  976 (1082)
T ss_pred             eeEEeCCHHHHHHHHHhhh---------------------h--cCCCcHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence            99999765 7776653210                     0  01222233444444433321      12445566677


Q ss_pred             HHHHHHHHHHHhh
Q 017640          351 KWIICSIIVIQER  363 (368)
Q Consensus       351 ~l~~~l~~~l~~~  363 (368)
                      +..+++.+.|.+.
T Consensus       977 ~rRd~L~e~L~~~  989 (1082)
T PLN02672        977 SRAERLKETLEAC  989 (1082)
T ss_pred             HHHHHHHHHHHHC
Confidence            7788888888764

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=99.90  E-value=1.4e-22  Score=190.68  Aligned_cols=169  Identities=23%  Similarity=0.296  Sum_probs=141.0

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      ....+.+++++|++.|.+   ++++++|+++|+..++.++    +++||+|+++.+.|.+.+..+....+..|.++++++
T Consensus        52 npt~~~Le~~lA~leg~e---~ivvt~gg~~Ai~~~l~al----l~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd  124 (388)
T PRK08861         52 NPNRGLLEQTLSELESGK---GAVVTNCGTSALNLWVSAL----LGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVD  124 (388)
T ss_pred             CchHHHHHHHHHHHhCCC---eEEEECCHHHHHHHHHHHH----cCCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEEC
Confidence            445668999999999963   8999999999999999998    899999999999998877666666666688888886


Q ss_pred             CCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCc
Q 017640          190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH  269 (368)
Q Consensus       190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~  269 (368)
                      .     .|++++++++++++++|++++|+||||.++|+++|.++|+++|+++++|++|+.+.....+ +.++|+++.|++
T Consensus       125 ~-----~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~~~pl-~~GaDivv~S~t  198 (388)
T PRK08861        125 Q-----SDAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQKPL-ELGADFVIHSTT  198 (388)
T ss_pred             C-----CCHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccCCCc-ccCCCEEEeecc
Confidence            4     3899999999999999999999999999999999999999999999999999977543222 458999999999


Q ss_pred             CcCCCC-c--ceEEEEcc-cccccCC
Q 017640          270 KMCGPT-G--IGFLFGKS-DLLSAMP  291 (368)
Q Consensus       270 K~~g~~-G--~G~l~~~~-~li~~l~  291 (368)
                      |+++++ +  .|++++++ ++.+.++
T Consensus       199 K~l~G~~d~~gG~i~~~~~~~~~~~~  224 (388)
T PRK08861        199 KYINGHSDVIGGVLITKTKEHAEELA  224 (388)
T ss_pred             eeccCCCcceeEEEEecHHHHHHHHH
Confidence            977654 3  68777754 4444443

>PRK08354 putative aminotransferase; Provisional

Probab=99.90  E-value=1.2e-21  Score=180.64  Aligned_cols=184  Identities=17%  Similarity=0.179  Sum_probs=143.2

Q ss_pred             CCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHH
Q 017640           66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV  145 (368)
Q Consensus        66 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~  145 (368)
                      .+++.|+.+.+..+|+.+.+++.+.+.....+|.             ...+|+++++++|.    +|++|+|+++++..+
T Consensus         8 ~~~i~l~~~~np~~p~~~~~a~~~~~~~~~~yp~-------------~~~l~~~ia~~~~~----~I~vt~G~~~al~~~   70 (311)
T PRK08354          8 EGLIDFSASVNPYPPEWLDEMFERAKEISGRYTY-------------YEWLEEEFSKLFGE----PIVITAGITEALYLI   70 (311)
T ss_pred             cceeEecCCCCCCCCHHHHHHHHHHHHHhhcCCC-------------hHHHHHHHHHHHCC----CEEECCCHHHHHHHH
Confidence            5678999887776678889998877654332221             13689999999982    799999999999988


Q ss_pred             HHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEccccccccccc
Q 017640          146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASIL  225 (368)
Q Consensus       146 ~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~  225 (368)
                      +..+     .+||+|++.+|+|+.    +...++..|++++.++      +|++.+++.++ +++++++++|+||||.++
T Consensus        71 ~~~~-----~~gd~vlv~~P~y~~----~~~~~~~~g~~~~~~~------~d~~~l~~~~~-~~~~vi~~~P~NPTG~~~  134 (311)
T PRK08354         71 GILA-----LRDRKVIIPRHTYGE----YERVARFFAARIIKGP------NDPEKLEELVE-RNSVVFFCNPNNPDGKFY  134 (311)
T ss_pred             HHhh-----CCCCeEEEeCCCcHH----HHHHHHHcCCEEeecC------CCHHHHHHhhc-CCCEEEEecCCCCCCCcc
Confidence            7543     489999999997777    5556677799997765      37889988876 568899999999999999


Q ss_pred             C---HHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCc--ceEEEE
Q 017640          226 P---IEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTG--IGFLFG  282 (368)
Q Consensus       226 ~---l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G--~G~l~~  282 (368)
                      +   +++|.++|++||+++|+|++|.--...-........+++.|+||.||.+|  +||+++
T Consensus       135 ~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~~~~~~vi~~~S~SK~~~l~GlRiG~~v~  196 (311)
T PRK08354        135 NFKELKPLLDAVEDRNALLILDEAFIDFVKKPESPEGENIIKLRTFTKSYGLPGIRVGYVKG  196 (311)
T ss_pred             CHHHHHHHHHHhhhcCcEEEEeCcchhccccccccCCCcEEEEeccHhhcCCccceeeeeee
Confidence            9   56777888999999999999963221101111346789999999999888  899988

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.90  E-value=1.8e-21  Score=185.72  Aligned_cols=222  Identities=21%  Similarity=0.305  Sum_probs=165.3

Q ss_pred             CCcccccccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEE
Q 017640           55 FPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVF  134 (368)
Q Consensus        55 f~~~~~~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~  134 (368)
                      .+.+....+ ..+.+|+++.+.++.++.+.+++.+++..+. +.... ...+ ......+.+++.+++++|++.   .++
T Consensus        70 ~~~lr~vin-atg~v~~tNlg~s~l~~~vieAv~~~~~~y~-~l~~~-l~~g-~~g~r~~~le~~lA~l~gae~---alv  142 (454)
T TIGR00474        70 RPSLRRVIN-ATGVVLHTNLGRAPLAEEAIEAVTDAARGYS-NLEYD-LETG-KRGSRYSHVEGLLCELTGAED---ALV  142 (454)
T ss_pred             cccccceeC-CCCcEEeccCCCCCCCHHHHHHHHHHHhccc-chhcc-cccc-ccchHHHHHHHHHHHHhCCCc---EEE
Confidence            334443333 4667888888888999999999999988653 22111 1111 123446789999999999973   355


Q ss_pred             eCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCc---ccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceE
Q 017640          135 TKNATEAINLVAYSWGLSNLKSGDEVILTVAEHH---SAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKL  211 (368)
Q Consensus       135 t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~---s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~  211 (368)
                      ++|++.|+.+++.+     +.+||+|++++.+|.   +.+ .+...++..|+++++++.+  ...|+++++++++++|++
T Consensus       143 v~sg~aAi~l~l~~-----l~~GdeVIvs~~e~v~~ggs~-~i~~~~~~~G~~~~~v~~~--~~~~l~dle~aI~~~T~l  214 (454)
T TIGR00474       143 VNNNAAAVLLALNT-----LAKGKEVIVSRGELVEIGGSF-RIPDVMEQSGAKLVEVGTT--NRTHLKDYEDAITENTAL  214 (454)
T ss_pred             ECCHHHHHHHHHHH-----hCCcCEEEECCChhhhhcchh-hHHHHHHHcCCEEEEeCCC--CCCCHHHHHHhcCcCCEE
Confidence            67778899888854     578999999988753   222 2334567789999999764  234799999999999999


Q ss_pred             EEEccccccc--c--cccCHHHHHHHHHhcCCEEEEecCCc---------CCcccc--cCCCCCccEEEecCcCcCCCCc
Q 017640          212 VVIHHISNML--A--SILPIEEIVHWSHDVGAKVLVDACQS---------VPHMVV--DVQGLDADFLVASSHKMCGPTG  276 (368)
Q Consensus       212 v~~~~~~n~t--G--~~~~l~~i~~l~~~~g~~li~D~a~~---------~~~~~~--~~~~~~~d~~~~s~~K~~g~~G  276 (368)
                      |++.+++|++  |  .+.|+++|+++||+||+++++|.+.+         .+..|.  +....++|++++|.+|++|++.
T Consensus       215 v~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp~  294 (454)
T TIGR00474       215 LLKVHTSNYRIVGFTEEVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQ  294 (454)
T ss_pred             EEEEccCcccccCCCCCCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCCe
Confidence            9999999984  6  57899999999999999999998632         222222  3345689999999999887666


Q ss_pred             ceEEEEcccccccCC
Q 017640          277 IGFLFGKSDLLSAMP  291 (368)
Q Consensus       277 ~G~l~~~~~li~~l~  291 (368)
                      .|++++++++++.++
T Consensus       295 ~G~i~g~~~~i~~l~  309 (454)
T TIGR00474       295 AGIIVGKKELIERLK  309 (454)
T ss_pred             EEEEEECHHHHHhhh
Confidence            899999999887765

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.90  E-value=1.3e-21  Score=186.33  Aligned_cols=208  Identities=22%  Similarity=0.267  Sum_probs=158.8

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCC----C-CCCcEEEeCCHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINA----S-DSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~----~-~~~~v~~t~g~t  139 (368)
                      +.++.|+.+... ++++.+.+++.+.+.......  ..    +.......++|+.++++++.    . ++++|++|+|++
T Consensus        33 ~~~~~l~~g~p~~~~~~~v~~a~~~~~~~~~~~~--~~----y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~  106 (394)
T PRK06836         33 DNVFDFSLGNPSVPPPAAVKEALRELAEEEDPGL--HG----YMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAA  106 (394)
T ss_pred             CCeEEecCcCCCCCCCHHHHHHHHHHHhcCCcCc--cc----CCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChH
Confidence            456788777655 567888888887765421111  11    11123344677777877752    1 235899999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC-CCCCHHHHHHhcccCceEEEEcccc
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSRKTKLVVIHHIS  218 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~l~~~~~~v~~~~~~  218 (368)
                      +++..++.++    +++||.|++++|.|..    +...++..|++++.++.+++ +.+|++++++++++++++|++++++
T Consensus       107 ~al~~~~~~l----~~~gd~Vli~~p~~~~----~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~  178 (394)
T PRK06836        107 GALNVALKAI----LNPGDEVIVFAPYFVE----YRFYVDNHGGKLVVVPTDTDTFQPDLDALEAAITPKTKAVIINSPN  178 (394)
T ss_pred             HHHHHHHHHh----cCCCCEEEEcCCCCcc----HHHHHHHcCCEEEEEecCCccCcCCHHHHHhhcCcCceEEEEeCCC
Confidence            9999999988    8899999999998877    44456677999999999866 7889999999999899999999999


Q ss_pred             cccccccC---HHHHHHHHHh------cCCEEEEecCCcCCcc---c-cc-CCCCCccEEEecCcCcCCCCc--ceEEEE
Q 017640          219 NMLASILP---IEEIVHWSHD------VGAKVLVDACQSVPHM---V-VD-VQGLDADFLVASSHKMCGPTG--IGFLFG  282 (368)
Q Consensus       219 n~tG~~~~---l~~i~~l~~~------~g~~li~D~a~~~~~~---~-~~-~~~~~~d~~~~s~~K~~g~~G--~G~l~~  282 (368)
                      ||||.++|   +++|+++|++      ||+++|+|++|..-..   + .. ....+..++++|++|.+|.+|  +||+++
T Consensus       179 NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~  258 (394)
T PRK06836        179 NPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYYDNSIVVYSFSKSLSLPGERIGYIAV  258 (394)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHccCcEEEEecchhhccCcceeeEEEec
Confidence            99999999   6677888888      8999999999873211   1 11 122346799999999999777  999999


Q ss_pred             ccccc
Q 017640          283 KSDLL  287 (368)
Q Consensus       283 ~~~li  287 (368)
                      ++++.
T Consensus       259 ~~~~~  263 (394)
T PRK06836        259 NPEME  263 (394)
T ss_pred             CHHHh
Confidence            87763

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=99.90  E-value=6.9e-22  Score=185.88  Aligned_cols=246  Identities=17%  Similarity=0.137  Sum_probs=167.0

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----C---CCCCCcEEEeCC
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----N---ASDSGEIVFTKN  137 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~---~~~~~~v~~t~g  137 (368)
                      +..+.|..+.+. ++++.+.+++++.... ..++.          .....++|+++++++    |   .++ ++|++|+|
T Consensus        21 ~~~i~l~~~~p~~~~~~~~~~~~~~~~~~-~~Y~~----------~~G~~~lr~~ia~~~~~~~~~~~~~~-~~I~it~G   88 (357)
T TIGR03539        21 DGIVDLSVGTPVDPVPPLIRAALAAAADA-PGYPQ----------TWGTPELREAIVDWLERRRGVPGLDP-TAVLPVIG   88 (357)
T ss_pred             CCeEEccCCCCCCCCCHHHHHHHHHHHhh-CCCCc----------ccCCHHHHHHHHHHHHHhcCCCCCCc-CeEEEccC
Confidence            566888887654 5577788887765432 11211          111224555555555    4   444 49999999


Q ss_pred             HHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEccc
Q 017640          138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHI  217 (368)
Q Consensus       138 ~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~  217 (368)
                      +++++..++..+   .+++||.|++.+|+|++..    ..++..|++++.++       |++.++   .+++++|+++++
T Consensus        89 ~~~~i~~~~~~l---~~~~gd~Vl~~~p~y~~~~----~~~~~~g~~~~~v~-------~~~~l~---~~~~~~v~~~~p  151 (357)
T TIGR03539        89 TKELVAWLPTLL---GLGPGDTVVIPELAYPTYE----VGALLAGATPVAAD-------DPTELD---PVGPDLIWLNSP  151 (357)
T ss_pred             hHHHHHHHHHHH---cCCCCCEEEECCCCcHHHH----HHHHhcCCEEeccC-------ChhhcC---ccCccEEEEeCC
Confidence            999999988776   3689999999999887743    44456798887764       333332   257899999999


Q ss_pred             ccccccccC---HHHHHHHHHhcCCEEEEecCCcC-Cc--cc---ccCC----CCCccEEEecCcCcCCCCc--ceEEEE
Q 017640          218 SNMLASILP---IEEIVHWSHDVGAKVLVDACQSV-PH--MV---VDVQ----GLDADFLVASSHKMCGPTG--IGFLFG  282 (368)
Q Consensus       218 ~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~-~~--~~---~~~~----~~~~d~~~~s~~K~~g~~G--~G~l~~  282 (368)
                      +||||.++|   +++|.++|++||+++|+|++|.. ..  .+   ++..    .....+++.|+||.||.+|  +||+++
T Consensus       152 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G~~i~  231 (357)
T TIGR03539       152 GNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVAG  231 (357)
T ss_pred             CCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCCceeEEEEec
Confidence            999999998   66789999999999999999862 11  11   1110    1234688999999998888  899999


Q ss_pred             cccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHh
Q 017640          283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       283 ~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~  362 (368)
                      ++++++.+......                     ....++.....++..+++..  ...+.++++..+..+++.+.|.+
T Consensus       232 ~~~~~~~~~~~~~~---------------------~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~L~~  288 (357)
T TIGR03539       232 DPALVAELLTVRKH---------------------AGLMVPAPVQAAMVAALGDD--GHVAEQKARYAARRAQLKPALEK  288 (357)
T ss_pred             CHHHHHHHHHHHhh---------------------cccCCCHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence            98888766533210                     11234555555555555421  12456667777777888888876


Q ss_pred             h
Q 017640          363 R  363 (368)
Q Consensus       363 ~  363 (368)
                      .
T Consensus       289 ~  289 (357)
T TIGR03539       289 A  289 (357)
T ss_pred             c
Confidence            4

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=99.90  E-value=1.5e-22  Score=191.66  Aligned_cols=218  Identities=20%  Similarity=0.226  Sum_probs=163.2

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      .+...+++++++++.|.+.  . +.++|+++|+..++.++    +++||+|+++++.|.+.+..+...++..|++++.++
T Consensus        60 ~p~~~~Le~~lA~~~g~~~--~-i~~~sG~~Ai~~~l~al----l~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d  132 (388)
T PRK07811         60 NPTRTALEEQLAALEGGAY--G-RAFSSGMAATDCLLRAV----LRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPVD  132 (388)
T ss_pred             CccHHHHHHHHHHHhCCCc--e-EEeCCHHHHHHHHHHHH----hCCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEeC
Confidence            3456689999999999874  3 44456689999999998    899999999999999877666666666788888887


Q ss_pred             CCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCc
Q 017640          190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH  269 (368)
Q Consensus       190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~  269 (368)
                      ..     |++++++++++++++|++++++||||.+.++++|.++|+++|+++|+|++++.+.....+ ..+.|++++|++
T Consensus       133 ~~-----d~e~l~~~i~~~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~~~p~-~~gaDivv~S~s  206 (388)
T PRK07811        133 LS-----DLDAVRAAITPRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYLQQPL-ALGADVVVHSTT  206 (388)
T ss_pred             CC-----CHHHHHHhcCcCCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCccccCCch-hhCCcEEEecCc
Confidence            64     899999999999999999999999999999999999999999999999999977542222 357899999999


Q ss_pred             CcCCCCc---ceEEEEcc-cccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 017640          270 KMCGPTG---IGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI  345 (368)
Q Consensus       270 K~~g~~G---~G~l~~~~-~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i  345 (368)
                      |+++++|   .|++++++ ++.+.++......+.                     +.+...   ...++.-++.  +...
T Consensus       207 K~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~---------------------~~s~~~---a~l~~~~L~t--l~~R  260 (388)
T PRK07811        207 KYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGA---------------------VPGPFD---AYLTLRGLKT--LAVR  260 (388)
T ss_pred             eeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCC---------------------CCCHHH---HHHHHhccCc--HHHH
Confidence            9887654   68888764 444444422211110                     111111   1222222232  4444


Q ss_pred             HHHHHHHHHHHHHHHHhhcCC
Q 017640          346 HAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       346 ~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      .++..+++..+.++|++++++
T Consensus       261 ~~~~~~na~~la~~L~~~p~v  281 (388)
T PRK07811        261 MDRHSENAEAVAEFLAGHPEV  281 (388)
T ss_pred             HHHHHHHHHHHHHHHHhCCCe
Confidence            566777888999999888764

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=99.90  E-value=2.7e-22  Score=189.23  Aligned_cols=170  Identities=24%  Similarity=0.284  Sum_probs=141.1

Q ss_pred             HHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeC
Q 017640          111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL  190 (368)
Q Consensus       111 ~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~  190 (368)
                      +..+++++.+++++|.+   +++++++++.|+..++. +    +++||+|+++++.|.++...+...++..|++++.++.
T Consensus        47 p~~~~le~~la~l~g~~---~~l~~~sG~~al~~~l~-l----l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~  118 (378)
T TIGR01329        47 PTRTALESLLAKLDKAD---RAFAFSSGMAALDVITR-L----LNNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDT  118 (378)
T ss_pred             hHHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHH-H----hCCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCC
Confidence            34668999999999984   55666667789988775 5    7899999999999998877777777888999999987


Q ss_pred             CCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcC
Q 017640          191 NDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK  270 (368)
Q Consensus       191 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K  270 (368)
                      .     |++++++++++++++|++++++||+|.+.|+++|+++|+++|+++++|++++.+.....+ .++.|++++|++|
T Consensus       119 ~-----d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~~~~l-~~g~Di~v~S~tK  192 (378)
T TIGR01329       119 T-----DLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLLCNPL-ELGADIVYHSATK  192 (378)
T ss_pred             C-----CHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChh-hcCCcEEEEecce
Confidence            5     899999999999999999999999999999999999999999999999999877543233 4579999999999


Q ss_pred             cC-CCCc--ceEEEEccc-ccccCCCcc
Q 017640          271 MC-GPTG--IGFLFGKSD-LLSAMPPFL  294 (368)
Q Consensus       271 ~~-g~~G--~G~l~~~~~-li~~l~~~~  294 (368)
                      ++ |+.+  .|+++++++ +.+++++..
T Consensus       193 ~l~G~~~~~~G~v~~~~~~~~~~~~~~~  220 (378)
T TIGR01329       193 FLAGHSDVMAGVLAVKGEEIAKKVYFLQ  220 (378)
T ss_pred             eccCCccceeEEEEeCcHHHHHHHHHHH
Confidence            65 4555  899988654 435555443

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.90  E-value=1.2e-21  Score=185.23  Aligned_cols=260  Identities=13%  Similarity=0.120  Sum_probs=182.0

Q ss_pred             CcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCC
Q 017640           79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD  158 (368)
Q Consensus        79 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd  158 (368)
                      ..+...+++.+.+....       ...    .+...++++.+++++|.+   .+++++|+|+|+.+++.++   .+++||
T Consensus        12 ~~~~e~~~~~~~l~~~~-------~~~----g~~~~~le~~la~~~g~~---~~v~~~sgt~al~lal~al---~~~~Gd   74 (379)
T PRK11658         12 MGDEELAAVKEVLRSGW-------ITT----GPKNQALEQAFCQLTGNQ---HAIAVSSATAGMHITLMAL---GIGPGD   74 (379)
T ss_pred             CCHHHHHHHHHHHHcCC-------ccC----CHhHHHHHHHHHHHhCCC---eEEEECCHHHHHHHHHHHc---CCCCCC
Confidence            34556777777665321       111    234668999999999986   5788999999999999988   478999


Q ss_pred             EEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC-CCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhc
Q 017640          159 EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDV  237 (368)
Q Consensus       159 ~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~  237 (368)
                      +|++++++|.++..    .+...|++++.++++++ +.+|++.+++++++++++|+..   +++|...|+++|.++|++|
T Consensus        75 ~Viv~~~~~~~~~~----~~~~~G~~~v~vd~~~~~~~~d~~~l~~~i~~~tkav~~~---~~~G~~~d~~~i~~~a~~~  147 (379)
T PRK11658         75 EVITPSLTWVSTLN----MIVLLGATPVMVDVDRDTLMVTPEAIEAAITPRTKAIIPV---HYAGAPADLDAIRAIGERY  147 (379)
T ss_pred             EEEECCCcHHHHHH----HHHHcCCEEEEEecCCCcCCcCHHHHHHhcccCCeEEEEe---CCCCCcCCHHHHHHHHHHc
Confidence            99999998888643    34556999999999855 5789999999999999988744   4699999999999999999


Q ss_pred             CCEEEEecCCcCCcccc--cCCCCCccEEEecCcCcCCCCcceEEEEc-ccccccCCCcccCCcceeecccCC-CCCCCC
Q 017640          238 GAKVLVDACQSVPHMVV--DVQGLDADFLVASSHKMCGPTGIGFLFGK-SDLLSAMPPFLGGGEMISDVFLDH-STFADP  313 (368)
Q Consensus       238 g~~li~D~a~~~~~~~~--~~~~~~~d~~~~s~~K~~g~~G~G~l~~~-~~li~~l~~~~~g~~~~~~~~~~~-~~~~~~  313 (368)
                      |+++|+|++|++|....  .....+.++++++.+|.+.....|+++.+ +++.+++++....|... ..+... ....+.
T Consensus       148 gi~vi~D~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~~g~GG~v~~~~~~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~  226 (379)
T PRK11658        148 GIPVIEDAAHAVGTYYKGRHIGARGTAIFSFHAIKNITCAEGGLVVTDDDELADRLRSLKFHGLGV-DAFDRQTQGRAPQ  226 (379)
T ss_pred             CCeEEEECCCccCCeECCeecCCCCCEEEeCCCCCcCcccCceEEEECCHHHHHHHHHHHHcCCCc-chhhhhcccCCCc
Confidence            99999999999887532  23445566677777785532225777764 67777777544333221 111000 000001


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcC
Q 017640          314 PSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHN  365 (368)
Q Consensus       314 ~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g  365 (368)
                      ...+..|+-.  .+..+.+|+.+.+..+++.+.++.+++++++.+.|.++++
T Consensus       227 ~~~~~~G~n~--~~~~l~AAl~~~ql~~l~~~~~~r~~~a~~~~~~L~~~~~  276 (379)
T PRK11658        227 AEVLTPGYKY--NLADINAAIALVQLAKLEALNARRREIAARYLQALADLPF  276 (379)
T ss_pred             ceeecccccc--CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            1122333311  1235566666666667899999999999999999987643

>PRK08064 cystathionine beta-lyase; Provisional

Probab=99.90  E-value=3e-22  Score=189.69  Aligned_cols=175  Identities=19%  Similarity=0.270  Sum_probs=144.3

Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEE
Q 017640          108 KATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKF  187 (368)
Q Consensus       108 ~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~  187 (368)
                      ...+..+++++.+++++|.+.  .+++ ++|+.++..++. +    +++||+|+++++.|++++..+...++..|++++.
T Consensus        51 ~~~p~~~~le~~lA~l~g~~~--~v~~-~sG~~ai~~~l~-~----l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~  122 (390)
T PRK08064         51 SGNPTREALEDIIAELEGGTK--GFAF-ASGMAAISTAFL-L----LSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTF  122 (390)
T ss_pred             CCChhHHHHHHHHHHHhCCCC--eEEE-CCHHHHHHHHHH-H----hCCCCEEEEccCccchHHHHHHHHHHHcCCEEEE
Confidence            345667789999999999872  5555 555678888875 5    7899999999999999888888888889999999


Q ss_pred             EeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEec
Q 017640          188 LNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVAS  267 (368)
Q Consensus       188 v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s  267 (368)
                      ++..     |++++++++++++++|++++++||||.+.|+++|.++|+++|+++++|++|+.+...... .+++|+++.|
T Consensus       123 v~~~-----d~~~l~~~l~~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~~~-~~g~Divv~S  196 (390)
T PRK08064        123 VDMT-----NLEEVAQNIKPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQKPL-DLGADVVLHS  196 (390)
T ss_pred             ECCC-----CHHHHHHhcCCCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCcccccCch-hhCCcEEEee
Confidence            9875     799999999999999999999999999999999999999999999999999876542222 4579999999


Q ss_pred             CcCcCC-CCc--ceEEEEc-ccccccCCCcccC
Q 017640          268 SHKMCG-PTG--IGFLFGK-SDLLSAMPPFLGG  296 (368)
Q Consensus       268 ~~K~~g-~~G--~G~l~~~-~~li~~l~~~~~g  296 (368)
                      ++|+++ +.|  .|+++++ +++++.+++...+
T Consensus       197 ~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~  229 (390)
T PRK08064        197 ATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNS  229 (390)
T ss_pred             cceeccCCccceeEEEEeCCHHHHHHHHHHHHh
Confidence            999765 554  5888876 4677777655543

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.90  E-value=2.4e-21  Score=185.47  Aligned_cols=262  Identities=15%  Similarity=0.180  Sum_probs=181.9

Q ss_pred             CCeEEeccCC-CC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHH
Q 017640           66 KKLVYLDNAA-TS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN  143 (368)
Q Consensus        66 ~~~i~l~~~~-~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~  143 (368)
                      +.+++|..+. .+ ..+|.+.+++.+.+..+.....  .....++..+...++++.+++++|.+  ..+++ +++++++.
T Consensus        46 ~~~~~~~s~dylgl~~~p~v~~a~~~~~~~~~~~~~--~s~~~~g~~~~~~~l~~~la~~~g~~--~~~~~-~sG~~an~  120 (407)
T PRK09064         46 REVTVWCSNDYLGMGQHPKVIEAMIEALDRCGAGAG--GTRNISGTNHYHVELERELADLHGKE--AALVF-TSGYVSND  120 (407)
T ss_pred             ceEEEEECCCCcCCCCCHHHHHHHHHHHHHcCCCCC--CcCcCccCHHHHHHHHHHHHHHhCCC--cEEEE-CcHHHHHH
Confidence            3456665543 33 4588899999998887643221  11111223566778999999999963  24444 55567888


Q ss_pred             HHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcc----cCceEEEEccccc
Q 017640          144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS----RKTKLVVIHHISN  219 (368)
Q Consensus       144 ~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~----~~~~~v~~~~~~n  219 (368)
                      .++..+.  ...+++.|+.....|.+....+    +..++++..++..     |++++++.++    +++++|++++++|
T Consensus       121 ~ai~~l~--~~~~~~~i~~~~~~h~s~~~~~----~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~~v~~~~v~s  189 (407)
T PRK09064        121 ATLSTLA--KLIPDCVIFSDELNHASMIEGI----RRSRCEKHIFRHN-----DVAHLEELLAAADPDRPKLIAFESVYS  189 (407)
T ss_pred             HHHHHHh--CCCCCCEEEEeCcchHHHHHHH----HHcCCcEEEECCC-----CHHHHHHHHHhccCCCCeEEEEeCCCC
Confidence            8777652  1346777777766666654433    3457777666653     7788888775    4679999999999


Q ss_pred             ccccccCHHHHHHHHHhcCCEEEEecCCcCCcc-c----c-cCCC--CCccEEEecCcCcCCCCcceEEEEcccccccCC
Q 017640          220 MLASILPIEEIVHWSHDVGAKVLVDACQSVPHM-V----V-DVQG--LDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP  291 (368)
Q Consensus       220 ~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~-~----~-~~~~--~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~  291 (368)
                      ++|.+.|+++|.++|++||+++++|++|+.|.. +    + +...  ..+|++++|++|.||+.| |++++++++++.+.
T Consensus       190 ~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G-G~~~~~~~~~~~l~  268 (407)
T PRK09064        190 MDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGVMG-GYIAGSAALVDAVR  268 (407)
T ss_pred             CCccccCHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhhccC-ceEecCHHHHHHHH
Confidence            999999999999999999999999999985532 1    0 1111  246899999999999887 99999988877654


Q ss_pred             CcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       292 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      ....+                  ..+. ++.+....+++.++++++++.  ...+++..++.+++.+.|.+. |+
T Consensus       269 ~~~~~------------------~~~t-~~~~~~~~~aa~~al~~~~~~--~~~~~~~~~~~~~l~~~L~~~-g~  321 (407)
T PRK09064        269 SYAPG------------------FIFT-TSLPPAIAAAALASIRHLKES--NEERERHQERAAKLKAALDAA-GI  321 (407)
T ss_pred             HhCcc------------------cccc-CcCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHc-CC
Confidence            33211                  1122 234455667777888888764  455688889999999999874 44

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=99.89  E-value=3.4e-22  Score=188.51  Aligned_cols=217  Identities=20%  Similarity=0.215  Sum_probs=161.7

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      .+..+++++.++++.|.+   ++++++|+++|+..++.++    +++||+|++..+.|.+.+..+..+++..+.++..++
T Consensus        50 ~p~~~~le~~lA~l~g~~---~v~~~~gg~~Ai~~~l~al----l~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d  122 (382)
T TIGR02080        50 NPTRDLLQQALAELEGGA---GAVVTNTGMSAIHLVTTAL----LGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVD  122 (382)
T ss_pred             CchHHHHHHHHHHHhCCC---cEEEEcCHHHHHHHHHHHH----cCCCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEEC
Confidence            344558999999999943   7899999999999999998    899999999999999887777776666677887775


Q ss_pred             CCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCc
Q 017640          190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH  269 (368)
Q Consensus       190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~  269 (368)
                      ..     |++.+++++++++++|++++++||||.+.|+++|.++|+++|+++++|++|+.+.....+ ..+.|+++.|++
T Consensus       123 ~~-----d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~pl-~~gaDivv~S~s  196 (382)
T TIGR02080       123 QG-----DEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQNPL-ALGADLVLHSCT  196 (382)
T ss_pred             CC-----CHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccccCCch-hhCCCEEEeecc
Confidence            32     899999999999999999999999999999999999999999999999999876542222 347899999999


Q ss_pred             CcCC-CCc--ceEEEE-cccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 017640          270 KMCG-PTG--IGFLFG-KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI  345 (368)
Q Consensus       270 K~~g-~~G--~G~l~~-~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i  345 (368)
                      |+++ +.+  .|++++ ++++++.++.+..-                     ...+.+...   ....+.-++.  +...
T Consensus       197 K~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~---------------------~g~~~sp~~---a~l~lr~l~t--l~~R  250 (382)
T TIGR02080       197 KYLNGHSDVIAGAVIAKDPQVAEELAWWANN---------------------LGVTGGAFD---SYLTLRGLRT--LVAR  250 (382)
T ss_pred             eeccCCCCceeEEEEeCCHHHHHHHHHHHHc---------------------cCCCCCHHH---HHHHHcccch--HHHH
Confidence            9765 555  788777 45565555422210                     001222221   1122333333  2333


Q ss_pred             HHHHHHHHHHHHHHHHhhcC
Q 017640          346 HAYEVKWIICSIIVIQERHN  365 (368)
Q Consensus       346 ~~~~~~l~~~l~~~l~~~~g  365 (368)
                      .++..+.+..+.++|++.+.
T Consensus       251 ~~~~~~na~~~a~~L~~~p~  270 (382)
T TIGR02080       251 MRLQQRNAQAIVEYLQTQPL  270 (382)
T ss_pred             HHHHHHHHHHHHHHHHhCCC
Confidence            45666888888888887764

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=99.89  E-value=1.1e-21  Score=189.21  Aligned_cols=222  Identities=17%  Similarity=0.214  Sum_probs=164.3

Q ss_pred             HHHHHHHHHHHHc----CCC-CCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEE
Q 017640          112 EYELARKKVAAFI----NAS-DSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLK  186 (368)
Q Consensus       112 ~~~~~r~~la~~~----~~~-~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~  186 (368)
                      ....+|+.+++++    |.. .+++|++|+|+++|+.++.+.+    ++|||+|++.+|+|++..    .+.+..|++++
T Consensus       133 G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l~~~~l----~~pGd~v~vE~PtY~~~~----~~~~~~g~~~~  204 (459)
T COG1167         133 GLPELREAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLL----LDPGDTVLVEDPTYPGAL----QALEALGARVI  204 (459)
T ss_pred             CcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHHHHHHHHh----CCCCCEEEEcCCCcHHHH----HHHHHcCCcEE
Confidence            3445666666655    443 2349999999999999999998    899999999999888854    44566699999


Q ss_pred             EEeCCCCCCCCHHHHHHhccc-CceEE-EEcccccccccccCH---HHHHHHHHhcCCEEEEecCCcCCcc----c---c
Q 017640          187 FLNLNDDESPDLDKLKEMLSR-KTKLV-VIHHISNMLASILPI---EEIVHWSHDVGAKVLVDACQSVPHM----V---V  254 (368)
Q Consensus       187 ~v~~~~~~~~d~~~l~~~l~~-~~~~v-~~~~~~n~tG~~~~l---~~i~~l~~~~g~~li~D~a~~~~~~----~---~  254 (368)
                      .||++++|. |+++|++.+.. ++|++ ++++.+||||.+++.   ++|.++|++||++||.|+.|+.-..    +   .
T Consensus       205 ~vp~d~~G~-~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~  283 (459)
T COG1167         205 PVPVDEDGI-DPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLK  283 (459)
T ss_pred             ecCCCCCCC-CHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChH
Confidence            999986665 99999999976 46654 588889999999994   5999999999999999999883211    1   1


Q ss_pred             cCCCCCccEEEecCcCcCCCCc-ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 017640          255 DVQGLDADFLVASSHKMCGPTG-IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAA  333 (368)
Q Consensus       255 ~~~~~~~d~~~~s~~K~~g~~G-~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~a  333 (368)
                      .++..+..++++||||.+.|.- +||+++++++++.+.....                     .....++.....++..-
T Consensus       284 ~ld~~~rViy~gSFSK~l~PglRlG~vv~p~~~~~~~~~~k~---------------------~~~~~~s~~~Q~~la~~  342 (459)
T COG1167         284 ALDAPGRVIYLGSFSKTLAPGLRLGYVVAPPELIEKLLRLKQ---------------------AADLGPSSLSQAALAAF  342 (459)
T ss_pred             hhCCCCCEEEEeeehhhcccccceeeeeCCHHHHHHHHHHHH---------------------HhcCCCChHHHHHHHHH
Confidence            2344578899999999777654 9999999998887663331                     11113344444444333


Q ss_pred             HH--HHHHhCHHHHHHHHHHHHHHHHHHHHhhc
Q 017640          334 ID--YLSTIGMQKIHAYEVKWIICSIIVIQERH  364 (368)
Q Consensus       334 l~--~~~~~g~~~i~~~~~~l~~~l~~~l~~~~  364 (368)
                      +.  .+.+ -+.++++..++..+.+.+.|.+..
T Consensus       343 l~~G~~~~-hl~~lR~~y~~rr~~l~~~L~~~~  374 (459)
T COG1167         343 LLSGHYDR-HLRRLRREYARRRDALLEALAEYL  374 (459)
T ss_pred             HHcCCHHH-HHHHHHHHHHHHHHHHHHHHHHhC
Confidence            33  1222 267778888888888888888775

>PLN02263 serine decarboxylase

Probab=99.89  E-value=3.7e-21  Score=181.99  Aligned_cols=235  Identities=11%  Similarity=-0.030  Sum_probs=184.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCCCC-CcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEE
Q 017640          108 KATDEYELARKKVAAFINASDS-GEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLK  186 (368)
Q Consensus       108 ~~~~~~~~~r~~la~~~~~~~~-~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~  186 (368)
                      ...++..++-+++++++|.+++ ...++|+|+|+++..++.+.+.  ..+...+++++..|+|    +.+.++..|.+++
T Consensus       130 ~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe--~~~~~vvy~S~~aH~S----v~KAa~llgi~~~  203 (470)
T PLN02263        130 HSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGRE--VFPDGILYASRESHYS----VFKAARMYRMECV  203 (470)
T ss_pred             hHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHh--hcCCcEEEEcCCccHH----HHHHHHhcCCcce
Confidence            4678888999999999999753 2579999999999999988643  2234478889998888    4566777899999


Q ss_pred             EEeCCCCCCCCHHHHHHhcccC---ceEEEEcccccccccccCHHHHHHHHHhcCC-----EEEEecCCcCCccc-----
Q 017640          187 FLNLNDDESPDLDKLKEMLSRK---TKLVVIHHISNMLASILPIEEIVHWSHDVGA-----KVLVDACQSVPHMV-----  253 (368)
Q Consensus       187 ~v~~~~~~~~d~~~l~~~l~~~---~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~-----~li~D~a~~~~~~~-----  253 (368)
                      .||.++++.+|+++|+++|.++   +.+|+.+..++++|.+.|+++|.++|+++|+     ++++|+|++....|     
T Consensus       204 ~Vp~d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~  283 (470)
T PLN02263        204 KVDTLVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRA  283 (470)
T ss_pred             EeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccc
Confidence            9999999999999999999654   5678889999999999999999999999997     99999999754432     


Q ss_pred             --ccCCCCCccEEEecCcCcC-CCCcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHH
Q 017640          254 --VDVQGLDADFLVASSHKMC-GPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGL  330 (368)
Q Consensus       254 --~~~~~~~~d~~~~s~~K~~-g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~  330 (368)
                        +++.. .+|.++.++||++ .|.++|++++|++.++.+....      .+...        ...--.|+.+....+.+
T Consensus       284 ~~~df~~-~vDSIsvD~HK~l~~P~~cgvll~R~~~~~~~~~~~------~Yl~~--------~d~ti~gSR~g~~al~l  348 (470)
T PLN02263        284 PKVTFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNV------EYLAS--------RDATIMGSRNGHAPIFL  348 (470)
T ss_pred             cccCCCc-CccEEEECCccccCCCcCEEEEEEehhhHhhhccCh------HhhCC--------CCCCcCCCCCcHHHHHH
Confidence              23222 4899999999964 5889999999986653332100      00000        00112556666667778


Q ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          331 GAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       331 ~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      ..+++.+...|+.++.+++.++++++.++|+++
T Consensus       349 W~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~  381 (470)
T PLN02263        349 WYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREA  381 (470)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            888888888899999999999999999999886

>PLN02242 methionine gamma-lyase

Probab=99.89  E-value=1.8e-22  Score=192.25  Aligned_cols=174  Identities=22%  Similarity=0.262  Sum_probs=143.7

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHH-HHHcCCE
Q 017640          106 SAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLV-AQKTGAN  184 (368)
Q Consensus       106 ~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~-~~~~g~~  184 (368)
                      +....+..+++++.+++++|.+   .+++++|+++|+..++.++    +++||+|++..+.|.+....+... .+..|++
T Consensus        71 ~r~~~Pt~~~LE~~lA~l~g~~---~~l~~~sG~~Ai~~al~al----~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~  143 (418)
T PLN02242         71 SRHFNPTVLNLGRQMAALEGTE---AAYCTASGMSAISSVLLQL----CSSGGHVVASNTLYGGTHALLAHFLPRKCNIT  143 (418)
T ss_pred             cCCCChhHHHHHHHHHHHhCCC---eEEEEccHHHHHHHHHHHH----hCCCCEEEEcCCcHHHHHHHHHHhhhhccCce
Confidence            3334566778999999999986   5578999999999999988    899999999999887765444332 2346888


Q ss_pred             EEEEeCCCCCCCCHHHHHHhccc-CceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccE
Q 017640          185 LKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADF  263 (368)
Q Consensus       185 v~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~  263 (368)
                      +++++..     |++.+++++++ ++++|++++++||||.+.++++|.++|++||+++|+|++|+....  +...++.|+
T Consensus       144 ~~~~d~~-----d~e~l~~~i~~~~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~~~~~--~~~~~g~di  216 (418)
T PLN02242        144 TTFVDIT-----DLEAVKKAVVPGKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFAPMVL--SPARLGADV  216 (418)
T ss_pred             EEEcCCC-----CHHHHHHhcCcCCCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCCccCC--CHHHcCCcE
Confidence            8888765     89999999988 599999999999999999999999999999999999999974332  333457899


Q ss_pred             EEecCcCcCCCCc---ceEEEEcccccccCCCc
Q 017640          264 LVASSHKMCGPTG---IGFLFGKSDLLSAMPPF  293 (368)
Q Consensus       264 ~~~s~~K~~g~~G---~G~l~~~~~li~~l~~~  293 (368)
                      ++.|++|.+++.|   +|++++++++++.++..
T Consensus       217 vv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~  249 (418)
T PLN02242        217 VVHSISKFISGGADIIAGAVCGPAELVNSMMDL  249 (418)
T ss_pred             EEEeCccccCCCCCceEEEEEcCHHHHHHHHHH
Confidence            9999999988776   59999998888776644

>PRK04311 selenocysteine synthase; Provisional

Probab=99.89  E-value=4.1e-21  Score=183.82  Aligned_cols=214  Identities=19%  Similarity=0.259  Sum_probs=161.3

Q ss_pred             CCCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHH
Q 017640           65 SKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL  144 (368)
Q Consensus        65 ~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~  144 (368)
                      ..+.+|+++.+.++.++.+.+++.+++..+. +.... ...+. ..+..+.+++.+++++|++   ..+++++++.|+.+
T Consensus        84 atg~v~~tNlg~s~l~~~v~eav~~~~~~~~-~le~~-l~~g~-~g~r~~~~e~~lA~l~Gae---~a~vv~sgtaAl~l  157 (464)
T PRK04311         84 ATGVVLHTNLGRALLSEAAIEAVTEAARGYS-NLEYD-LATGK-RGSRDRALAALLCALTGAE---DALVVNNNAAAVLL  157 (464)
T ss_pred             CCccEEeccCCCCCCCHHHHHHHHHHHhccc-ccccc-hhhcc-cchHHHHHHHHHHHHhCCC---eEEEECCHHHHHHH
Confidence            4677777777778999999999998876542 21100 11111 1344668999999999986   45777788899999


Q ss_pred             HHHHccCCCCCCCCEEEEcCCCCccc--HHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccc--
Q 017640          145 VAYSWGLSNLKSGDEVILTVAEHHSA--IVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNM--  220 (368)
Q Consensus       145 ~~~~~~~~~~~~gd~vl~~~~~~~s~--~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~--  220 (368)
                      ++.+     +.+||+|++++.+|..+  ...+....+..|+++++|+.+  +..++++++++++++|++|++.+++|+  
T Consensus       158 ~l~~-----l~~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~--~~t~~~dle~aI~~~TklV~~vh~sN~~i  230 (464)
T PRK04311        158 ALNA-----LAAGKEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTT--NRTHLRDYEQAINENTALLLKVHTSNYRI  230 (464)
T ss_pred             HHHH-----hCCCCEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCC--CCCCHHHHHHhcCccCeEEEEEcCCCccc
Confidence            8865     47899999998876632  112344567789999999764  234789999999999999999999998  


Q ss_pred             cc--cccCHHHHHHHHHhcCCEEEEecCCcC---------Ccccc--cCCCCCccEEEecCcCcCCCCcceEEEEccccc
Q 017640          221 LA--SILPIEEIVHWSHDVGAKVLVDACQSV---------PHMVV--DVQGLDADFLVASSHKMCGPTGIGFLFGKSDLL  287 (368)
Q Consensus       221 tG--~~~~l~~i~~l~~~~g~~li~D~a~~~---------~~~~~--~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li  287 (368)
                      +|  ...|+++|+++||+||+++++|.+++.         +..+.  +.-..++|++++|++|++|++.+|+++++++++
T Consensus       231 ~G~~~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp~~G~i~g~~~li  310 (464)
T PRK04311        231 EGFTKEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGPQAGIIVGKKELI  310 (464)
T ss_pred             cccCCcCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCCceEEEEEcHHHH
Confidence            34  567999999999999999999996431         12221  122368999999999988766789999999998


Q ss_pred             ccCC
Q 017640          288 SAMP  291 (368)
Q Consensus       288 ~~l~  291 (368)
                      +.++
T Consensus       311 ~~l~  314 (464)
T PRK04311        311 ARLK  314 (464)
T ss_pred             HHHh
Confidence            8766

>PLN02721 threonine aldolase

Probab=99.89  E-value=4.2e-22  Score=187.12  Aligned_cols=209  Identities=16%  Similarity=0.168  Sum_probs=153.1

Q ss_pred             CCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHH
Q 017640           66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV  145 (368)
Q Consensus        66 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~  145 (368)
                      .+++.|..+....+++.+.+++.+.  ..  . +. .+.  +  .....++++.+++++|.+   .+++++++++++..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~a~~~~--~~--~-~~-~~~--~--~~~~~~l~~~la~~~~~~---~~~~~~~Gs~a~~~~   71 (353)
T PLN02721          5 SRVVDLRSDTVTKPTDAMRAAMANA--EV--D-DD-VLG--Y--DPTALRLEEEMAKIFGKE---AALFVPSGTMGNLIS   71 (353)
T ss_pred             hhhhhhhcccccCCCHHHHHHHHhc--cC--C-Cc-ccC--C--CHHHHHHHHHHHHHhCCc---eeEEecCccHHHHHH
Confidence            3566777777777788888887543  11  1 10 111  1  222568999999999986   356777777787777


Q ss_pred             HHHccCCCCC-CCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcc-------cCceEEEEccc
Q 017640          146 AYSWGLSNLK-SGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS-------RKTKLVVIHHI  217 (368)
Q Consensus       146 ~~~~~~~~~~-~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~-------~~~~~v~~~~~  217 (368)
                      +.++    .+ +||+|++++++|.+.+... ..++..|++++.++.++++.+|++.++++++       +++++|+++++
T Consensus        72 l~~~----~~~~gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~  146 (353)
T PLN02721         72 VLVH----CDVRGSEVILGDNSHIHLYENG-GISTLGGVHPRTVKNNEDGTMDLDAIEAAIRPKGDDHFPTTRLICLENT  146 (353)
T ss_pred             HHHH----ccCCCCeEEEcCccceehhccc-chhhhcCceeEecCCCcCCCcCHHHHHHHHHhccCCCCCcceEEEEecc
Confidence            7776    55 9999999999987655311 1345679999999988888899999999997       57899999775


Q ss_pred             -ccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc---cccCC--CCCccEEEecCcCcCCCCcceEEEEcccccc
Q 017640          218 -SNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVDVQ--GLDADFLVASSHKMCGPTGIGFLFGKSDLLS  288 (368)
Q Consensus       218 -~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~---~~~~~--~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~  288 (368)
                       +||+|.++|   +++|.++|++||+++++|++|..+..   ..+..  ..+.|.++.|+||+++++..++++.++++++
T Consensus       147 ~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G~~~~~~~~~~~  226 (353)
T PLN02721        147 HANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLVKAADSVSVCLSKGLGAPVGSVIVGSKSFIR  226 (353)
T ss_pred             ccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHhhhCCEEEEecccccCCceeeEEecCHHHHH
Confidence             678999988   78999999999999999999875431   11111  2268899999999887653345677888877


Q ss_pred             cCCC
Q 017640          289 AMPP  292 (368)
Q Consensus       289 ~l~~  292 (368)
                      .+..
T Consensus       227 ~~~~  230 (353)
T PLN02721        227 KAKR  230 (353)
T ss_pred             hHHH
Confidence            6543

>PRK08114 cystathionine beta-lyase; Provisional

Probab=99.89  E-value=3.1e-22  Score=187.70  Aligned_cols=173  Identities=12%  Similarity=0.148  Sum_probs=148.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCE
Q 017640          105 LSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGAN  184 (368)
Q Consensus       105 ~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~  184 (368)
                      +++...+..+.+++.++++-|..   ..++++|++.|+..++.++    +++||+|+++...|.+.+..+...+++.|++
T Consensus        56 YsR~~nPt~~~le~~la~LEg~~---~a~~~~SGmaAi~~~~~~l----l~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~  128 (395)
T PRK08114         56 YGRRGTLTHFSLQEAMCELEGGA---GCALYPCGAAAVANAILAF----VEQGDHVLMTGTAYEPTQDFCSKILSKLGVT  128 (395)
T ss_pred             ccCCCChhHHHHHHHHHHHhCCC---eEEEEhHHHHHHHHHHHHH----cCCCCEEEEeCCCcHHHHHHHHHHHHhcCcE
Confidence            33344566668999999998875   5577777999999999988    8999999999999999888787778889999


Q ss_pred             EEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcC--CEEEEecCCcCCcccccCCCCCcc
Q 017640          185 LKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVG--AKVLVDACQSVPHMVVDVQGLDAD  262 (368)
Q Consensus       185 v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g--~~li~D~a~~~~~~~~~~~~~~~d  262 (368)
                      +.+++..     |.+.++++++++|++|++++++||+|.+.|+++|+++||++|  +++++|++++.|.. ++..++++|
T Consensus       129 v~~vd~~-----d~~~l~~~l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~-~~pl~~GaD  202 (395)
T PRK08114        129 TTWFDPL-----IGADIAKLIQPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVL-FKALDFGID  202 (395)
T ss_pred             EEEECCC-----CHHHHHHhcCCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccc-cCHHHcCCc
Confidence            9998864     789999999999999999999999999999999999999984  99999999999877 777788999


Q ss_pred             EEEecCcCcCCCCc---ceEEEEcccccccC
Q 017640          263 FLVASSHKMCGPTG---IGFLFGKSDLLSAM  290 (368)
Q Consensus       263 ~~~~s~~K~~g~~G---~G~l~~~~~li~~l  290 (368)
                      +++.|.+|++++++   +|+++.+++..+.+
T Consensus       203 ivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l  233 (395)
T PRK08114        203 ISIQAGTKYLVGHSDAMIGTAVANARCWEQL  233 (395)
T ss_pred             EEEEcCcccccCCCcceeEEEEcCHHHHHHH
Confidence            99999999766553   78777777654433

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=99.89  E-value=1.1e-21  Score=187.17  Aligned_cols=263  Identities=14%  Similarity=0.098  Sum_probs=172.9

Q ss_pred             CCeEEeccCCC---C-CCc--HHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC-----CCCcE--
Q 017640           66 KKLVYLDNAAT---S-QKP--IAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-----DSGEI--  132 (368)
Q Consensus        66 ~~~i~l~~~~~---~-~~~--~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-----~~~~v--  132 (368)
                      ++.+.|..+.+   . ..|  +.+.+++.+......        ..++.......++|+++++++...     .+++|  
T Consensus        26 ~~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~--------~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v   97 (396)
T PRK09257         26 PDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETET--------TKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVAT   97 (396)
T ss_pred             cCcEecceeeEECCCCCEeccHHHHHHHHHhccccc--------CCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEE
Confidence            45678888742   1 233  667777666543210        001111233447888888876322     23466  


Q ss_pred             EEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeC-C-CCCCCCHHHHHHhcc---c
Q 017640          133 VFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL-N-DDESPDLDKLKEMLS---R  207 (368)
Q Consensus       133 ~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~-~-~~~~~d~~~l~~~l~---~  207 (368)
                      ++|+|+++|+.+++.++.  .+++||+|++.+|.|+..    ...++..|++++.++. + +++.+|++.+++++.   +
T Consensus        98 ~iT~Ga~~al~~~~~~l~--~~~pGd~Vlv~~P~y~~~----~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~  171 (396)
T PRK09257         98 VQTPGGTGALRVGADFLK--RAFPDAKVWVSDPTWPNH----RAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQAPA  171 (396)
T ss_pred             EecCCccHHHHHHHHHHH--HhCCCCeEEECCCCcccH----HHHHHHcCCcEEEEeccccccCccCHHHHHHHHHhCCC
Confidence            999999999999987652  148999999999988874    4555667999999997 3 347889999999875   3


Q ss_pred             CceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc-------cc-cCCC-CCccEEEecCcCcCCCC
Q 017640          208 KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM-------VV-DVQG-LDADFLVASSHKMCGPT  275 (368)
Q Consensus       208 ~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~-------~~-~~~~-~~~d~~~~s~~K~~g~~  275 (368)
                      +++++++++++||||.+++   +++|+++|++||+++|+|++|..-..       ++ .+.. ....++++|+||.|+++
T Consensus       172 ~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~  251 (396)
T PRK09257        172 GDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLY  251 (396)
T ss_pred             CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCccc
Confidence            4577788999999999999   67889999999999999999873111       11 1111 23568899999999998


Q ss_pred             c--ceEEEE---ccccc----ccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-----HhC
Q 017640          276 G--IGFLFG---KSDLL----SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS-----TIG  341 (368)
Q Consensus       276 G--~G~l~~---~~~li----~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~-----~~g  341 (368)
                      |  +||+++   +++.+    ..+....                     +....+++.....++...++.-.     +.-
T Consensus       252 GlRiG~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~  310 (396)
T PRK09257        252 GERVGALSVVAEDAEEADRVLSQLKATI---------------------RTNYSNPPAHGAAIVATILNDPELRAEWEAE  310 (396)
T ss_pred             cccceeEEEEeCCHHHHHHHHHHHHHHh---------------------hhhcCCCcHHHHHHHHHHhCCHHHHHHHHHH
Confidence            8  999974   22322    2222111                     01111334444444444443210     112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Q 017640          342 MQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       342 ~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      ++.++++.++..+.+.+.|++.
T Consensus       311 ~~~~r~~~~~rr~~l~~~L~~~  332 (396)
T PRK09257        311 LEEMRERIKAMRQLLVEALKAK  332 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            4567777888888888888765

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.89  E-value=4e-21  Score=178.06  Aligned_cols=257  Identities=19%  Similarity=0.233  Sum_probs=198.8

Q ss_pred             CCeEEeccCCCC--CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHH
Q 017640           66 KKLVYLDNAATS--QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN  143 (368)
Q Consensus        66 ~~~i~l~~~~~~--~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~  143 (368)
                      +.+++|-.+.+-  .-.+.++++..+.+..+......+  ..-.+..+...++++.||+++|.+.  .++|++|- .|+.
T Consensus        39 ~~~~nf~SNdYLGLa~~~~~~~a~~~~~~~~g~g~~gs--R~i~G~~~~h~~LE~~lA~f~g~e~--al~f~SGy-~AN~  113 (388)
T COG0156          39 RKVLNFCSNDYLGLASHPELIEAAKAAIRRYGVGAGGS--RLISGTSDLHVELEEELADFLGAEA--ALLFSSGF-VANL  113 (388)
T ss_pred             ceeEeeeccCcccccCCHHHHHHHHHHHHHhCCCCCCc--CcccCCcHHHHHHHHHHHHHhCCCc--EEEEcccc-hhHH
Confidence            456666665543  457789999999999874433222  2123346778899999999999983  56666665 6899


Q ss_pred             HHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc------CceEEEEccc
Q 017640          144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR------KTKLVVIHHI  217 (368)
Q Consensus       144 ~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~  217 (368)
                      .++.++    .+++|.|+...-+|.|..+.    ++..+++++.++.+     |+++||+.+.+      +.++|+++.+
T Consensus       114 ~~i~~l----~~~~dli~~D~lnHASiidG----~rls~a~~~~f~Hn-----D~~~Le~~l~~~~~~~~~~~~IvtegV  180 (388)
T COG0156         114 GLLSAL----LKKGDLIFSDELNHASIIDG----IRLSRAEVRRFKHN-----DLDHLEALLEEARENGARRKLIVTEGV  180 (388)
T ss_pred             HHHHHh----cCCCcEEEEechhhhhHHHH----HHhCCCcEEEecCC-----CHHHHHHHHHhhhccCCCceEEEEecc
Confidence            999998    88999999999999996554    45568999999986     99999999976      3589999999


Q ss_pred             ccccccccCHHHHHHHHHhcCCEEEEecCCcCCccc---------ccCCCCCccEEEecCcCcCCCCcceEEEEcccccc
Q 017640          218 SNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMV---------VDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLS  288 (368)
Q Consensus       218 ~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~---------~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~  288 (368)
                      .++.|.+.|+++|.+++++||+++++|++|+.|..-         +.+.....|+++++++|.||..| |++.++..+++
T Consensus       181 fSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~G-g~v~g~~~~~d  259 (388)
T COG0156         181 FSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSG-GYIAGSAALID  259 (388)
T ss_pred             ccCCCCcCCHHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhcccC-ceeeCcHHHHH
Confidence            999999999999999999999999999999987762         12223356899999999999776 99999998888


Q ss_pred             cCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHh
Q 017640          289 AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       289 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~  362 (368)
                      .++....+                  ..| +.+.+....+++..+++.+.+  ....+++..++..++...+..
T Consensus       260 ~L~~~ar~------------------~if-StalpP~~aaa~~~al~~l~~--~~~~r~~L~~~~~~~~~~~~~  312 (388)
T COG0156         260 YLRNRARP------------------FIF-STALPPAVAAAALAALRILEE--GPERRERLQELAAFFRSLLKA  312 (388)
T ss_pred             HHHHhCCc------------------eec-cCCCCHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHh
Confidence            76643221                  122 235666667778889998886  477788888999988855443

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=99.89  E-value=4e-22  Score=188.25  Aligned_cols=217  Identities=17%  Similarity=0.223  Sum_probs=159.3

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEE
Q 017640          109 ATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL  188 (368)
Q Consensus       109 ~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v  188 (368)
                      ..+..+++++.+++++|.+   ++++++|+++|+..++.++    +++||+|+++.+.|.++...+..+ +..|++++.+
T Consensus        51 ~np~~~~lE~~lA~l~g~~---~~l~~~sG~~Ai~~~l~~l----l~~GD~Vlv~~~~y~~~~~~~~~~-~~~g~~v~~~  122 (385)
T PRK08574         51 ENPTLRPLEEALAKLEGGV---DALAFNSGMAAISTLFFSL----LKAGDRVVLPMEAYGTTLRLLKSL-EKFGVKVVLA  122 (385)
T ss_pred             CCccHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHH----hCCCCEEEEcCCCchhHHHHHHHh-hccCcEEEEE
Confidence            3455668999999999975   5677788899999999988    899999999999999987666554 6678888776


Q ss_pred             eCCCCCCCCHHHHHHhccc-CceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEec
Q 017640          189 NLNDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVAS  267 (368)
Q Consensus       189 ~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s  267 (368)
                      ..      |++.+++++++ ++++|++++++||||.+.|+++|.++|+++|+++++|++++.+...-.+ ..+.|++++|
T Consensus       123 ~~------d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l-~~GaDivv~S  195 (385)
T PRK08574        123 YP------STEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYRPL-RHGADFVVHS  195 (385)
T ss_pred             CC------CHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCChh-hhCCcEEEee
Confidence            43      68899999988 8999999999999999999999999999999999999999877542122 4578999999


Q ss_pred             CcCcCCCCc---ceEEEE-cccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHH
Q 017640          268 SHKMCGPTG---IGFLFG-KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQ  343 (368)
Q Consensus       268 ~~K~~g~~G---~G~l~~-~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~  343 (368)
                      ++|+++++|   .|++++ ++++.+.++.....                    + .+..+...   +..++.-++.  +.
T Consensus       196 ~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~--------------------~-g~~~~p~~---a~l~l~~l~t--L~  249 (385)
T PRK08574        196 LTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRR--------------------L-GTIMQPFE---AYLVLRGLKT--LE  249 (385)
T ss_pred             CceeecCCCCceeEEEEECcHHHHHHHHHHHHh--------------------c-CCCCCHHH---HHHHHcccCc--HH
Confidence            999887554   475555 55665554422210                    0 11222111   1122222222  33


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCC
Q 017640          344 KIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       344 ~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      ...++..+++..+.++|++++.+
T Consensus       250 ~R~~~~~~na~~la~~L~~~p~v  272 (385)
T PRK08574        250 VRFERQCRNAMAIAEFLSEHPKV  272 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCc
Confidence            34455666888888888877654

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.89  E-value=6.1e-21  Score=182.50  Aligned_cols=256  Identities=18%  Similarity=0.180  Sum_probs=181.1

Q ss_pred             EEeccCCCCC-CcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHH
Q 017640           69 VYLDNAATSQ-KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAY  147 (368)
Q Consensus        69 i~l~~~~~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~  147 (368)
                      .+.+++..+. .+|.|++++.+++..+..+...  ........+...++++.+++++|.+   ..++.+++++|+..++.
T Consensus        49 ~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~--s~~~~~~~~~~~~le~~la~~~g~~---~~~~~~SG~~An~~ai~  123 (406)
T PRK13393         49 VWCSNDYLGMGQHPAVLAAMHEALDTCGAGAGG--TRNISGTNHYHVLLEAELADLHGKE---AALLFTSGYVSNWAALS  123 (406)
T ss_pred             EeecccccCCCCCHHHHHHHHHHHHHcCCCCcc--cccccCChHHHHHHHHHHHHHhCCC---cEEEeCCcHHHHHHHHH
Confidence            3444445554 6889999999999876433221  1111122446778999999999974   44444455678999988


Q ss_pred             HccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcc----cCceEEEEccccccccc
Q 017640          148 SWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS----RKTKLVVIHHISNMLAS  223 (368)
Q Consensus       148 ~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~----~~~~~v~~~~~~n~tG~  223 (368)
                      ++.  ...+|+.|+.....|.++...+.    ..|.+++.++..     |++.+++.+.    +++++|++++++|++|.
T Consensus       124 ~l~--~~~~g~~I~~~~~~H~s~~~~~~----~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~  192 (406)
T PRK13393        124 TLG--SRLPGCVILSDELNHASMIEGIR----HSRAEKRIFRHN-----DPADLERKLSDLDPHRPKLVAFESVYSMDGD  192 (406)
T ss_pred             Hhh--cCCCCCEEEEccchhHHHHHHHH----HcCCeEEEeCCC-----CHHHHHHHHHhccCCCCEEEEEcCCCCCCCc
Confidence            762  12378888888888888765543    347788777754     7777777664    35789999999999999


Q ss_pred             ccCHHHHHHHHHhcCCEEEEecCCcCCcc-cc-----cCCC--CCccEEEecCcCcCCCCcceEEEEcccccccCCCccc
Q 017640          224 ILPIEEIVHWSHDVGAKVLVDACQSVPHM-VV-----DVQG--LDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLG  295 (368)
Q Consensus       224 ~~~l~~i~~l~~~~g~~li~D~a~~~~~~-~~-----~~~~--~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~  295 (368)
                      +.|+++|.++|++||+++++|++|+.|.. +.     ....  .++|+++++++|.+|..| |+++.++++++.++....
T Consensus       193 ~~~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~G-G~~~~~~~~~~~l~~~~~  271 (406)
T PRK13393        193 IAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVMG-GYITGSAALCDFIRSFAS  271 (406)
T ss_pred             hhCHHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhcccC-ceeeCCHHHHHHHHHhCc
Confidence            99999999999999999999999986552 11     1111  136888899999999877 899888888776553321


Q ss_pred             CCcceeecccCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          296 GGEMISDVFLDHSTFADPPSRFE-AGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       296 g~~~~~~~~~~~~~~~~~~~~~~-~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                                          .|. .++.+....+++.++++.+.+.+  ..+++..++.+++.+.|.+.
T Consensus       272 --------------------~~~~t~~~~p~~~aa~~aaL~~~~~~~--~~~~~~~~~~~~l~~~L~~~  318 (406)
T PRK13393        272 --------------------GFIFTTSLPPAVAAGALASVRHLKASS--AERERHQDRVARLRARLDKA  318 (406)
T ss_pred             --------------------CceecCccCHHHHHHHHHHHHHHhhCH--HHHHHHHHHHHHHHHHHHHc
Confidence                                111 33566677788889999887643  22456678888888888764

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.89  E-value=2.6e-21  Score=181.65  Aligned_cols=234  Identities=16%  Similarity=0.146  Sum_probs=168.1

Q ss_pred             HHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeC
Q 017640          111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL  190 (368)
Q Consensus       111 ~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~  190 (368)
                      +...++++.+++++|.+   ++++++|+|+|+..++.++   .+++||+|+++.++|+++...+    ...|++++.+++
T Consensus        18 ~~~~~~~~~la~~~~~~---~~~~~~sgt~al~~~l~~l---~~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~~~~   87 (352)
T cd00616          18 PKVREFEKAFAEYLGVK---YAVAVSSGTAALHLALRAL---GIGPGDEVIVPSFTFVATANAI----LLLGATPVFVDI   87 (352)
T ss_pred             HHHHHHHHHHHHHhCCC---eEEEECCHHHHHHHHHHHc---CCCCCCEEEeCCcchHHHHHHH----HHcCCeEEEEec
Confidence            34668999999999974   6788899999999999987   3689999999999998865543    456999999999


Q ss_pred             CC-CCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccC-CCCCccEEEecC
Q 017640          191 ND-DESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDV-QGLDADFLVASS  268 (368)
Q Consensus       191 ~~-~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~-~~~~~d~~~~s~  268 (368)
                      ++ ++.+|++++++++++++++|++++   ++|...|+++|.++|+++|+++|+|++|++|....+. -....|+.++|+
T Consensus        88 ~~~~~~~d~~~l~~~i~~~~~~v~~~~---~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~~~~d~~~~S~  164 (352)
T cd00616          88 DPDTYNIDPELIEAAITPRTKAIIPVH---LYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVGTFGDAGAFSF  164 (352)
T ss_pred             CCCcCCcCHHHHHHhcCcCCeEEEEEC---CCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCEEcccCcceeEEcC
Confidence            87 688999999999988999998875   5899999999999999999999999999988763221 011257888886


Q ss_pred             c--CcCCCCcceEEEEcc-cccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 017640          269 H--KMCGPTGIGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI  345 (368)
Q Consensus       269 ~--K~~g~~G~G~l~~~~-~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i  345 (368)
                      +  |+++.+.+|+++.++ ++++.+++...++......     .+......+..+.+++...+      ......+++.+
T Consensus       165 ~~~K~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~aa~------~~~~l~~~~~~  233 (352)
T cd00616         165 HPTKNLTTGEGGAVVTNDEELAERARLLRNHGRDRDRF-----KYEHEILGYNYRLSEIQAAI------GLAQLEKLDEI  233 (352)
T ss_pred             CCCCCCcccCceEEEECCHHHHHHHHHHHHcCCCCCCC-----ccccceeeeccCcCHHHHHH------HHHHHHhhHHH
Confidence            6  988543367777764 6766665443322211000     00000111222223322222      22222346778


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCC
Q 017640          346 HAYEVKWIICSIIVIQERHNTTL  368 (368)
Q Consensus       346 ~~~~~~l~~~l~~~l~~~~g~t~  368 (368)
                      .++.+++.+++.+.|.+++|+++
T Consensus       234 ~~~~~~~~~~~~~~L~~~~g~~~  256 (352)
T cd00616         234 IARRREIAERYKELLADLPGIRL  256 (352)
T ss_pred             HHHHHHHHHHHHHHhcCCCCccC
Confidence            88999999999999998877653

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.89  E-value=3.7e-21  Score=185.46  Aligned_cols=284  Identities=15%  Similarity=0.104  Sum_probs=189.3

Q ss_pred             CeEEeccCCCCCCcHHHHHHHHHHHH-HhhccCCCCcchhhHHHH-HHHHHHHHHHHHHcCCCCCCcEEE---eCCHHHH
Q 017640           67 KLVYLDNAATSQKPIAVLKALQNYYE-AYNSNVHRGIHFLSAKAT-DEYELARKKVAAFINASDSGEIVF---TKNATEA  141 (368)
Q Consensus        67 ~~i~l~~~~~~~~~~~v~~a~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~r~~la~~~~~~~~~~v~~---t~g~t~a  141 (368)
                      ..+.|=.+. ...++.+++++...+. .+........+..|.... ++.+..++..+++|+.... .+.+   ..+++.|
T Consensus        35 ~~l~liase-n~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~~~~-~~~~nv~~~SG~~A  112 (475)
T PLN03226         35 KGLELIASE-NFTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRLDPE-KWGVNVQPLSGSPA  112 (475)
T ss_pred             cCeeEecCC-ccCCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCCCcc-eeEEecCcCchHHH
Confidence            334554433 4678899999998884 333222222333333333 3343466678888988754 3333   3677889


Q ss_pred             HHHHHHHccCCCCCCCCEEEEcCC---CCcccHHHHHHHHHHcCCEE--E--EEeCC-CCCCCCHHHHHHhccc-CceEE
Q 017640          142 INLVAYSWGLSNLKSGDEVILTVA---EHHSAIVPWQLVAQKTGANL--K--FLNLN-DDESPDLDKLKEMLSR-KTKLV  212 (368)
Q Consensus       142 ~~~~~~~~~~~~~~~gd~vl~~~~---~~~s~~~~~~~~~~~~g~~v--~--~v~~~-~~~~~d~~~l~~~l~~-~~~~v  212 (368)
                      +..++.++    +++||+|+..+.   .|.+.... ....+..+..+  .  .+.++ +++.+|+++|++++.. ++++|
T Consensus       113 N~av~~aL----~~pgD~Il~~d~~~gGhl~H~~~-~~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~~~pklI  187 (475)
T PLN03226        113 NFAVYTAL----LQPHDRIMGLDLPHGGHLSHGYQ-TDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAMLFRPKLI  187 (475)
T ss_pred             HHHHHHHh----CCCCCEEEECCCCcCcchhhhhh-hcccccccceEEEEeeeeeecCCCCCcCHHHHHHHHhhcCCeEE
Confidence            99999998    899999998553   33332111 10011111221  2  23334 4689999999998864 67766


Q ss_pred             EEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCC---CCCccEEEecCcCcC-CCCcceEEEEcccccc
Q 017640          213 VIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQ---GLDADFLVASSHKMC-GPTGIGFLFGKSDLLS  288 (368)
Q Consensus       213 ~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~---~~~~d~~~~s~~K~~-g~~G~G~l~~~~~li~  288 (368)
                      ++. . +.+|...|+++|.++|+++|+++++|++|++|....+..   ..++|++++++||++ ||.| |+++++++.++
T Consensus       188 v~~-~-S~~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~~~Div~~t~hK~L~GP~G-g~I~~~~~~~~  264 (475)
T PLN03226        188 IAG-A-SAYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEYCDVVTTTTHKSLRGPRG-GMIFFRKGPKP  264 (475)
T ss_pred             EEe-c-CcCCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCCCCeEEEecCcccccCCCc-eEEEEchhhcc
Confidence            553 2 347899999999999999999999999999988755432   126999999999966 8888 89999888765


Q ss_pred             cCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          289 AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       289 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      .+++...++..... ..+...+    ..+ .|+++...++++.++++++.+.+.+.+++++.++++++.+.|.+ .|++
T Consensus       265 ~~~~g~~~~~d~~~-~i~~a~~----~~~-~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~-~G~~  336 (475)
T PLN03226        265 PKGQGEGAVYDYED-KINFAVF----PGL-QGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMS-KGYK  336 (475)
T ss_pred             cccCCCccHHHHHH-HhccccC----Ccc-CCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHh-CCCE
Confidence            54332111000000 0010000    123 46799999999999999999989999999999999999999988 4654

>PRK07050 cystathionine beta-lyase; Provisional

Probab=99.89  E-value=8.9e-22  Score=186.48  Aligned_cols=170  Identities=15%  Similarity=0.177  Sum_probs=143.3

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEE
Q 017640          109 ATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL  188 (368)
Q Consensus       109 ~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v  188 (368)
                      ..+..+++++.++++.|.+   ++++++|+++|+.+++.++    +++||+|+++++.|.++...+...++..|++++++
T Consensus        63 ~~pt~~~Le~~lA~l~g~~---~~l~~~sgt~Ai~~~l~al----~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~v  135 (394)
T PRK07050         63 ATPTSLALAQRLAEIEGGR---HALLQPSGLAAISLVYFGL----VKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFY  135 (394)
T ss_pred             CCHHHHHHHHHHHHHhCCC---eEEEeccHHHHHHHHHHHH----hCCCCEEEEecCCcccHHHHHHHHHHhcCeEEEEE
Confidence            3455678999999999964   7899999999999999998    89999999999999988776666778889999988


Q ss_pred             eCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecC
Q 017640          189 NLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASS  268 (368)
Q Consensus       189 ~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~  268 (368)
                      +..     +.+.+++++++++++|++++++||+|.+.++++|.++|+++|+++++|++|+.+.. ......+.|+++.|+
T Consensus       136 d~~-----~~~~l~~~i~~~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~~~-~~~l~~GaDi~v~S~  209 (394)
T PRK07050        136 DPL-----IGAGIADLIQPNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLA-FKPFEHGVDISVQAL  209 (394)
T ss_pred             CCC-----CHHHHHHhcCCCCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCcccccc-cCHHHcCCeEEEEEC
Confidence            753     45789999999999999999999999999999999999999999999999998764 222345789999999


Q ss_pred             cCcCCCCc---ceEEEE-cccccccCC
Q 017640          269 HKMCGPTG---IGFLFG-KSDLLSAMP  291 (368)
Q Consensus       269 ~K~~g~~G---~G~l~~-~~~li~~l~  291 (368)
                      +|.++..+   +|++++ +++++++++
T Consensus       210 tK~~~g~~~~~gG~v~~~~~~~~~~~~  236 (394)
T PRK07050        210 TKYQSGGSDVLMGATITADAELHAKLK  236 (394)
T ss_pred             CceecCCCCeeEEEEEECCHHHHHHHH
Confidence            99776443   676666 556666554

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=99.89  E-value=1.6e-21  Score=181.73  Aligned_cols=207  Identities=16%  Similarity=0.164  Sum_probs=149.6

Q ss_pred             HHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC
Q 017640          114 ELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD  193 (368)
Q Consensus       114 ~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~  193 (368)
                      .++|+.+++++|.+++++|++|+|+++++..+.. +    +++|+ |++.+|+|+.    +...++..|++++.++.+. 
T Consensus        56 ~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~~-~----~~~g~-v~v~~P~y~~----y~~~~~~~g~~~~~v~~~~-  124 (339)
T PRK06959         56 DGLAACAARYYGAPDAAHVLPVAGSQAAIRALPA-L----LPRGR-VGIAPLAYSE----YAPAFARHGHRVVPLDEAA-  124 (339)
T ss_pred             HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHHH-h----cCCCe-EEEcCCCcHH----HHHHHHHCCCEEEeecccc-
Confidence            3899999999999854699999999999987654 4    56776 8889996665    5666677799999888653 


Q ss_pred             CCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHH---HHhcCCEEEEecCCcCCcc--cc-cCCCCCccEEEec
Q 017640          194 ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHW---SHDVGAKVLVDACQSVPHM--VV-DVQGLDADFLVAS  267 (368)
Q Consensus       194 ~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l---~~~~g~~li~D~a~~~~~~--~~-~~~~~~~d~~~~s  267 (368)
                           +.    +.+.++++++++|+||||.+++.+++.++   |++++.++|+|++|.-...  ++ .+......+++.|
T Consensus       125 -----~~----~~~~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~~~~~~~vi~l~S  195 (339)
T PRK06959        125 -----DT----LPAALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPAASLAAHTDRPGLVVLRS  195 (339)
T ss_pred             -----hh----ccccCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCcccchhccCCCCEEEEec
Confidence                 22    22345789999999999999996655554   5678999999999884321  11 1212234588899


Q ss_pred             CcCcCCCCc--ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 017640          268 SHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI  345 (368)
Q Consensus       268 ~~K~~g~~G--~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i  345 (368)
                      +||.||.+|  +||+++++++++.+......+                       +.+.....++..+++.-.  -.+.+
T Consensus       196 fSK~~gl~GlRiGy~v~~~~li~~l~~~~~~~-----------------------~vs~~~q~a~~~~L~~~~--~~~~~  250 (339)
T PRK06959        196 VGKFFGLAGVRAGFVLAAPALLAALRDALGAW-----------------------TVSGPARHAVRAAFADAA--WQAAM  250 (339)
T ss_pred             ChhhcCCcchheEEEecCHHHHHHHHHhcCCC-----------------------CCcHHHHHHHHHHhCcHH--HHHHH
Confidence            999999888  999999999988776443211                       234445555555554211  14566


Q ss_pred             HHHHHHHHHHHHHHHHhhcCC
Q 017640          346 HAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       346 ~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      +++..+..+++.+.|++. |+
T Consensus       251 ~~~~~~~r~~l~~~L~~~-g~  270 (339)
T PRK06959        251 RERLAADGARLAALLRAH-GF  270 (339)
T ss_pred             HHHHHHHHHHHHHHHHHC-CC
Confidence            777788888888888775 44

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.89  E-value=2.9e-21  Score=185.78  Aligned_cols=259  Identities=15%  Similarity=0.113  Sum_probs=177.2

Q ss_pred             CCeEEeccCCC--CCCcH----HHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNAAT--SQKPI----AVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~~--~~~~~----~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      .+++.|..+..  ...++    .+.+++.+++..-  ..       .+.......++|++++++++.+   .+++|+|++
T Consensus        36 ~~~~~L~~g~p~~D~~tds~t~a~~~a~~~a~~~g--~~-------~Y~~~~g~~~Lreaia~~~~~~---~vv~t~ggt  103 (460)
T PRK13238         36 YNPFLLKSEDVFIDLLTDSGTGAMSDRQWAAMMRG--DE-------AYAGSRSYYRLEDAVKDIFGYP---YTIPTHQGR  103 (460)
T ss_pred             CCEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHhC--Cc-------ccCCCCCHHHHHHHHHHHhCCC---cEEECCCHH
Confidence            46677777665  32222    4666666666421  10       0111334558999999999975   789999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC--------C--CCCCHHHHHHhccc--
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--------D--ESPDLDKLKEMLSR--  207 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--------~--~~~d~~~l~~~l~~--  207 (368)
                      +|+..++.++    +++|| |++++|.|.+.    ....+..|++++.+++++        +  |.+|++.|++.+++  
T Consensus       104 ~A~~~~~~al----l~pGD-Vii~~p~~~~~----~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~  174 (460)
T PRK13238        104 AAEQILFPVL----IKKGD-VVPSNYHFDTT----RAHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVG  174 (460)
T ss_pred             HHHHHHHHHh----CCCCC-EEccCCcccch----HHHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcC
Confidence            9999999988    99999 88888855553    334456799999999863        2  44999999999984  


Q ss_pred             --CceEEEEcccccccc-cccC---HHHHHHHHHhcCCEEEEecCCcCC-----------cccccCC------CCCccEE
Q 017640          208 --KTKLVVIHHISNMLA-SILP---IEEIVHWSHDVGAKVLVDACQSVP-----------HMVVDVQ------GLDADFL  264 (368)
Q Consensus       208 --~~~~v~~~~~~n~tG-~~~~---l~~i~~l~~~~g~~li~D~a~~~~-----------~~~~~~~------~~~~d~~  264 (368)
                        ++++|++++++|||| .+++   +++|.++|++||+++|.|+++..+           ....++.      ....|++
T Consensus       175 ~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~  254 (460)
T PRK13238        175 AENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGL  254 (460)
T ss_pred             CCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEE
Confidence              689999999999998 8887   579999999999999999988542           1111111      1247999


Q ss_pred             EecCcC-cCCCCcceEEEEc-ccccccCCCcccCCcceeecccCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHhC
Q 017640          265 VASSHK-MCGPTGIGFLFGK-SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRF-EAGTPAIGEAIGLGAAIDYLSTIG  341 (368)
Q Consensus       265 ~~s~~K-~~g~~G~G~l~~~-~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~gt~~~~~~~a~~~al~~~~~~g  341 (368)
                      +.|.+| .+++.| |+++.+ +++++.++......                 ..+ ..|..+...+.|++.+++...+  
T Consensus       255 ~~Sg~K~g~~~~G-G~i~~~d~~l~~~~~~~~~~~-----------------~g~~t~~g~~~~~~~Ala~~l~e~~~--  314 (460)
T PRK13238        255 TMSAKKDAMVNIG-GLLCFRDEDLFTECRTLCILY-----------------EGFPTYGGLAGRDMEALAVGLYEGMD--  314 (460)
T ss_pred             EEecccCCCCcce-eEEEcChHHHHHHhhhccccc-----------------CCcccccCcHHHHHHHHHhhHHHhhC--
Confidence            999999 566766 888888 57877776553211                 011 2334455556667666654322  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          342 MQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       342 ~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      .+.+ ++..+.++++.+.|.+. |+.
T Consensus       315 ~~~~-~~~~~~~~~l~~~L~~~-G~~  338 (460)
T PRK13238        315 EDYL-AYRIGQVEYLGEGLEEA-GVP  338 (460)
T ss_pred             hHHH-HHHHHHHHHHHHHHHHC-CCC
Confidence            1222 22233467888888765 543

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.89  E-value=9.2e-22  Score=183.14  Aligned_cols=165  Identities=14%  Similarity=0.174  Sum_probs=130.4

Q ss_pred             HHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC
Q 017640          114 ELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD  193 (368)
Q Consensus       114 ~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~  193 (368)
                      .++|+++++++|.++. +|++|+|+++++.+++. +    +++|+ |++.+|+|+.    +...++..|++++.+|+++ 
T Consensus        43 ~~lr~~ia~~~~~~~~-~I~it~Gs~~~l~~~~~-~----~~~~~-vv~~~P~y~~----y~~~~~~~G~~v~~vp~~~-  110 (332)
T PRK06425         43 TDIEDQIKIYTQGLKI-KVLIGPGLTHFIYRLLS-Y----INVGN-IIIVEPNFNE----YKGYAFTHGIRISALPFNL-  110 (332)
T ss_pred             HHHHHHHHHHhCCCcc-eEEECCCHHHHHHHHHH-H----hCCCc-EEEeCCChHH----HHHHHHHcCCeEEEEeCCc-
Confidence            3899999999999875 89999999999999986 4    45665 6666896555    6677778899999999875 


Q ss_pred             CCCCHHHHHHhcccCceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc----c-ccC-CCCCccEE
Q 017640          194 ESPDLDKLKEMLSRKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----V-VDV-QGLDADFL  264 (368)
Q Consensus       194 ~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~----~-~~~-~~~~~d~~  264 (368)
                      ..+|.+.+++   .++++|++++|+||||.+++   +++|.++|++||++||+|++|..-..    + ... ...+..++
T Consensus       111 ~~~~~~~l~~---~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi~  187 (332)
T PRK06425        111 INNNPEILNN---YNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVII  187 (332)
T ss_pred             ccCcHHHHhh---cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCCCEEE
Confidence            3346665543   37899999999999999999   66778888999999999999872211    1 111 22346789


Q ss_pred             EecCcCcCCCCc--ceEEEEcccccccCCCc
Q 017640          265 VASSHKMCGPTG--IGFLFGKSDLLSAMPPF  293 (368)
Q Consensus       265 ~~s~~K~~g~~G--~G~l~~~~~li~~l~~~  293 (368)
                      ++|+||.||.+|  +||+++++++++.+...
T Consensus       188 ~~SfSK~~~l~GlRiGy~v~~~~li~~l~~~  218 (332)
T PRK06425        188 GRSLTKILGIPSLRIGYIATDDYNMKISRKI  218 (332)
T ss_pred             EeecHHhcCCchhhheeeecCHHHHHHHHHc
Confidence            999999999888  99999999988776643

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.88  E-value=8.8e-22  Score=188.03  Aligned_cols=161  Identities=22%  Similarity=0.324  Sum_probs=140.8

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      .+..+.+++.++++.|.+   ..++++|++.|+..++.++    +++||+|+++.+.|++++..+...++..|+++++++
T Consensus        63 ~p~~~~Le~~lA~leg~~---~al~~~sG~~Ai~~al~~l----l~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd  135 (431)
T PRK08248         63 NPTTDVFEKRIAALEGGI---GALAVSSGQAAITYSILNI----ASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVD  135 (431)
T ss_pred             CchHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHH----hCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEEC
Confidence            345668999999999965   5688999999999999887    899999999999999988888888888999999998


Q ss_pred             CCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCc
Q 017640          190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH  269 (368)
Q Consensus       190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~  269 (368)
                      ..     |++.+++++++++++|++++++||||.+.|+++|.++|+++|+++|+|++++.+....++ .+++|+++.|++
T Consensus       136 ~~-----d~e~l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~~~~~pl-~~gaDivv~S~t  209 (431)
T PRK08248        136 PS-----DPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYLLRPI-EHGADIVVHSAT  209 (431)
T ss_pred             CC-----CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCccccCChh-HcCCCEEEEcCc
Confidence            74     899999999999999999999999999999999999999999999999999865443333 578999999999


Q ss_pred             CcCCCCc--ceEEEEc
Q 017640          270 KMCGPTG--IGFLFGK  283 (368)
Q Consensus       270 K~~g~~G--~G~l~~~  283 (368)
                      |++|++|  +|.+++.
T Consensus       210 K~lgg~g~~~Gg~v~~  225 (431)
T PRK08248        210 KFIGGHGTSIGGVIVD  225 (431)
T ss_pred             cccCCCCCceEEEEEe
Confidence            9999887  6666553

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=99.88  E-value=8.2e-22  Score=185.46  Aligned_cols=217  Identities=17%  Similarity=0.184  Sum_probs=161.7

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      ....+++++.++++.|.+.   .++++|+++|+..++ .+    +++||+|++.++.|++.+..+...++..|++++.++
T Consensus        51 ~pt~~~le~~la~l~g~~~---~~~~~sG~~ai~~~~-~l----l~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd  122 (366)
T PRK08247         51 NPTRGVLEQAIADLEGGDQ---GFACSSGMAAIQLVM-SL----FRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVN  122 (366)
T ss_pred             CchHHHHHHHHHHHhCCCc---EEEEcCHHHHHHHHH-HH----hCCCCEEEEecCCcCcHHHHHHHHhhccCceEEEEC
Confidence            4456789999999999974   377778889998876 45    689999999999999988777777778899999998


Q ss_pred             CCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCc
Q 017640          190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH  269 (368)
Q Consensus       190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~  269 (368)
                      ..     |++.+++++++++++|++++|+||+|...++++|.++|++||+++|+|++|+.+...... ..+.|+++.|++
T Consensus       123 ~~-----d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~p~-~~g~di~i~S~s  196 (366)
T PRK08247        123 TA-----SLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRPL-EEGADIVIHSAT  196 (366)
T ss_pred             CC-----CHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccCch-hcCCcEEEeecc
Confidence            64     899999999999999999999999999999999999999999999999999755432222 357899999999


Q ss_pred             CcCCCCc---ceEEEEc-ccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 017640          270 KMCGPTG---IGFLFGK-SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI  345 (368)
Q Consensus       270 K~~g~~G---~G~l~~~-~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i  345 (368)
                      |++++.+   .|+++.+ +++.+.+.......+                     ...+......+..+++   .  +...
T Consensus       197 K~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g---------------------~~~s~~~a~l~~~~l~---t--l~~r  250 (366)
T PRK08247        197 KYLGGHNDVLAGLVVAKGQELCERLAYYQNAAG---------------------AVLSPFDSWLLIRGMK---T--LALR  250 (366)
T ss_pred             eeccCCCceeeeEEecChHHHHHHHHHHHHhcC---------------------CCCChHHHHHHHhccC---c--HHHH
Confidence            9877543   6888776 556555442221100                     0122211111222222   2  2333


Q ss_pred             HHHHHHHHHHHHHHHHhhcCC
Q 017640          346 HAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       346 ~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      .++..+.+..+.++|++++++
T Consensus       251 ~~~~~~~a~~l~~~L~~~p~v  271 (366)
T PRK08247        251 MRQHEENAKAIAAFLNEQPGV  271 (366)
T ss_pred             HHHHHHHHHHHHHHHHhCCCe
Confidence            445688888888888887764

>PTZ00376 aspartate aminotransferase; Provisional

Probab=99.88  E-value=8.1e-22  Score=188.35  Aligned_cols=272  Identities=13%  Similarity=-0.001  Sum_probs=175.7

Q ss_pred             CCeEEeccCCC--CCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCC-C----CCCcEE--EeC
Q 017640           66 KKLVYLDNAAT--SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINA-S----DSGEIV--FTK  136 (368)
Q Consensus        66 ~~~i~l~~~~~--~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~-~----~~~~v~--~t~  136 (368)
                      ++.++|..+.+  ...+..+.+++.+++........    ...+.......++|+++++++.. .    .+++|+  .|.
T Consensus        29 ~~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~  104 (404)
T PTZ00376         29 PSKVNLGIGAYRDENGKPYVLESVRKAEKIIAEKNL----DKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQAL  104 (404)
T ss_pred             cccEecccceeECCCCCEehhhHHHHHHHHhccccC----CCCCCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeecc
Confidence            46688888864  23444556666666543221110    11122234555888888887632 1    234777  488


Q ss_pred             CHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC--CCCCCCHHHHHHhcc---cCceE
Q 017640          137 NATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDESPDLDKLKEMLS---RKTKL  211 (368)
Q Consensus       137 g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~l~---~~~~~  211 (368)
                      |+++|+..++..+. ..+++||+|++.+|.|+.    +...++..|++++.+++.  +++.+|++.+++++.   +++++
T Consensus       105 G~~~al~~~~~~l~-~~~~~Gd~Vlv~~P~y~~----~~~~~~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~  179 (404)
T PTZ00376        105 SGTGALRLGFEFLK-RFLPAGTTVYVSNPTWPN----HVNIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVV  179 (404)
T ss_pred             CcchHHHHHHHHHH-HhcCCCCEEEEcCCCchh----HHHHHHHcCCceeeccccCcccCCcCHHHHHHHHHhCCCCCEE
Confidence            99999988875321 027899999999998877    455667779999999984  347889999999885   34678


Q ss_pred             EEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc--------cc-cCCC-CCccEEEecCcCcCCCCc--
Q 017640          212 VVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM--------VV-DVQG-LDADFLVASSHKMCGPTG--  276 (368)
Q Consensus       212 v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~--------~~-~~~~-~~~d~~~~s~~K~~g~~G--  276 (368)
                      ++++++|||||.+++   +++|+++|++||++||+|++|..-..        ++ .+.. .+..+++.|+||.|+.+|  
T Consensus       180 ~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlR  259 (404)
T PTZ00376        180 LLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGER  259 (404)
T ss_pred             EEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcccccccc
Confidence            889999999999999   67888899999999999999862211        01 1111 125689999999999888  


Q ss_pred             ceEEE---EcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH---HHh--CHHHHHHH
Q 017640          277 IGFLF---GKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL---STI--GMQKIHAY  348 (368)
Q Consensus       277 ~G~l~---~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~---~~~--g~~~i~~~  348 (368)
                      +||++   .++++++.+......-                 .+...++.+.....++..+++.-   ...  -++.++++
T Consensus       260 vG~~~~~~~~~~~~~~l~~~~~~~-----------------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~  322 (404)
T PTZ00376        260 IGALHIVCANKEEAANVLSQLKLI-----------------IRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGR  322 (404)
T ss_pred             cceEEEEeCCHHHHHHHHHHHHHH-----------------HhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            99984   4665443322110000                 00011133444445555555321   111  14455667


Q ss_pred             HHHHHHHHHHHHHhh
Q 017640          349 EVKWIICSIIVIQER  363 (368)
Q Consensus       349 ~~~l~~~l~~~l~~~  363 (368)
                      .++..+.+.+.|.+.
T Consensus       323 ~~~~r~~l~~~L~~~  337 (404)
T PTZ00376        323 IQNMRQLLYDELKAL  337 (404)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            778888888888775

>PLN02271 serine hydroxymethyltransferase

Probab=99.88  E-value=9.2e-21  Score=180.41  Aligned_cols=288  Identities=15%  Similarity=0.061  Sum_probs=200.8

Q ss_pred             eEEeccCCCCCCcHHHHHHHHHHHHHhhc--cCCCCcchhhHH-HHHHHHHHHHHHHHHcCCCCCC---cEEEeCCHHHH
Q 017640           68 LVYLDNAATSQKPIAVLKALQNYYEAYNS--NVHRGIHFLSAK-ATDEYELARKKVAAFINASDSG---EIVFTKNATEA  141 (368)
Q Consensus        68 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~r~~la~~~~~~~~~---~v~~t~g~t~a  141 (368)
                      .+.|=... ..+++.+++++...+..-+.  .|.. .++.|.. ..+...-..++..++||++.++   +|.. -+++.|
T Consensus       150 ~l~LIASE-N~~S~av~~algS~ltnkYaEG~pG~-Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp-~SGs~A  226 (586)
T PLN02271        150 GIELIASE-NFVCRAVMEALGSHLTNKYSEGMPGA-RYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQP-YSCTSA  226 (586)
T ss_pred             Ceeecccc-ccCCHHHHHHhcCcccccCCCCCCCC-cCCCCChhHHHHHHHHHHHHHHHhCCcccccccceee-ccHHHH
Confidence            34554333 45788888888776665322  2221 2233333 3445555788889999987521   4433 377789


Q ss_pred             HHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHH-----HHHHHcCCEEEEEe--CC-CCCCCCHHHHHH-hcccCceEE
Q 017640          142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQ-----LVAQKTGANLKFLN--LN-DDESPDLDKLKE-MLSRKTKLV  212 (368)
Q Consensus       142 ~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~-----~~~~~~g~~v~~v~--~~-~~~~~d~~~l~~-~l~~~~~~v  212 (368)
                      +..++.++    ++|||+|+..+.+|.++.....     ..+...|..+..++  ++ +++.+|.+++++ +...+|++|
T Consensus       227 N~aV~~AL----l~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~~rPKLI  302 (586)
T PLN02271        227 NFAVYTGL----LLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKIL  302 (586)
T ss_pred             HHHHHHHh----cCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEcccccccCccCHHHHHHHhhhcCCeEE
Confidence            99999998    9999999999998888764321     22344566555555  54 568999999998 667799999


Q ss_pred             EEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCC---CCCccEEEecCcCc-CCCCcceEEEEcccccc
Q 017640          213 VIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQ---GLDADFLVASSHKM-CGPTGIGFLFGKSDLLS  288 (368)
Q Consensus       213 ~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~---~~~~d~~~~s~~K~-~g~~G~G~l~~~~~li~  288 (368)
                      ++.+..++  ..+|+++|.++|+++|+++++|++|..|.+..+..   ..++|++++|.||+ .||.| |+++++++...
T Consensus       303 I~g~Sayp--r~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~~aDvvt~TTHKtLrGPrG-G~I~~r~~~~~  379 (586)
T PLN02271        303 ICGGSSYP--REWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSLRGPRG-GIIFYRKGPKL  379 (586)
T ss_pred             EECchhcc--CcCCHHHHHHHHHHcCCEEEEECcccccccccCcCCCCCcCCcEEEeCCcccCCCCCc-eEEEecccccc
Confidence            99998888  77899999999999999999999999998855431   23699999999995 58888 88888887665


Q ss_pred             cCCCcccCCcceeecccCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          289 AMPPFLGGGEMISDVFLDHSTFADPP-SRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       289 ~l~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      ..++...+|+...............- -.++.|+.+. .+++++.++++......+...+++.++++.+.+.|.+. |++
T Consensus       380 ~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~-~IAalAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~~-G~~  457 (586)
T PLN02271        380 RKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNN-HIAALAIALKQVATPEYKAYMQQVKKNAQALASALLRR-KCR  457 (586)
T ss_pred             cccCCccccccccccHHHHHHhhcccCCccccChhHH-HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHC-CCe
Confidence            55555555443211110000000000 1445555544 49999999998877666788888999999999999876 544

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.88  E-value=2.9e-21  Score=161.70  Aligned_cols=162  Identities=26%  Similarity=0.301  Sum_probs=135.6

Q ss_pred             HHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC
Q 017640          114 ELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD  193 (368)
Q Consensus       114 ~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~  193 (368)
                      +++++.++++++.+. +++++++|+|+|+.+++.++    .+++++|++.++.|++...   ..++..|++++.++.+.+
T Consensus         3 ~~~~~~l~~~~~~~~-~~~~~~~~~t~a~~~~~~~~----~~~~~~v~~~~~~~~~~~~---~~~~~~g~~~~~v~~~~~   74 (170)
T cd01494           3 EELEEKLARLLQPGN-DKAVFVPSGTGANEAALLAL----LGPGDEVIVDANGHGSRYW---VAAELAGAKPVPVPVDDA   74 (170)
T ss_pred             HHHHHHHHHHcCCCC-CcEEEeCCcHHHHHHHHHHh----CCCCCEEEEeecccceehh---hHHHhcCCEEEEeccCCC
Confidence            479999999997444 38899999999999999998    6679999999999999763   345677999999998765


Q ss_pred             CCCCH--HHHHHhc-ccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccc---cCCCCCccEEEec
Q 017640          194 ESPDL--DKLKEML-SRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVV---DVQGLDADFLVAS  267 (368)
Q Consensus       194 ~~~d~--~~l~~~l-~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~---~~~~~~~d~~~~s  267 (368)
                      +..+.  +.+++.. .++++++++++++|++|...|+++|.++|+++|+++++|++|+.+....   +....++|+++.|
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~d~~~~s  154 (170)
T cd01494          75 GYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFS  154 (170)
T ss_pred             CccchhhhhhhhccccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccccccccCCEEEEE
Confidence            43333  2554433 4688999999999999999999999999999999999999999777654   4555679999999


Q ss_pred             CcCcCCCCcceEEEEc
Q 017640          268 SHKMCGPTGIGFLFGK  283 (368)
Q Consensus       268 ~~K~~g~~G~G~l~~~  283 (368)
                      +||++|++|+|++++|
T Consensus       155 ~~K~~~~~~~G~l~~~  170 (170)
T cd01494         155 LHKNLGGEGGGVVIVK  170 (170)
T ss_pred             cccccCCCceEEEEeC
Confidence            9999888899999875

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=99.88  E-value=3.8e-21  Score=183.80  Aligned_cols=163  Identities=19%  Similarity=0.300  Sum_probs=141.8

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      .+..+++++.+++++|.+   ..++++|+++|+..++.++    +++||+|++.++.|++++..+...++..|+++++++
T Consensus        56 ~p~~~~le~~lA~l~g~~---~~v~~~sG~~Ai~~al~~l----~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~  128 (418)
T TIGR01326        56 NPTTDVLEQRIAALEGGV---AALAVASGQAAITYAILNL----AQAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVD  128 (418)
T ss_pred             ChhHHHHHHHHHHHhCCC---eEEEEccHHHHHHHHHHHH----hCCCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEEC
Confidence            344568999999999974   5688999999999999888    889999999999999888778888888999999998


Q ss_pred             CCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCc
Q 017640          190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH  269 (368)
Q Consensus       190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~  269 (368)
                      .+     |++++++++++++++|++++++||+|.+.|+++|.++|+++|+++|+|++++.+... .....+.|+++.|++
T Consensus       129 ~~-----d~~~l~~~l~~~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~~~~-~~l~~g~Divv~S~s  202 (418)
T TIGR01326       129 PD-----DPEEFEKAIDENTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPYLC-RPIDHGADIVVHSAT  202 (418)
T ss_pred             CC-----CHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchhhcC-CchhcCCeEEEECcc
Confidence            64     899999999999999999999999999999999999999999999999999876432 222457999999999


Q ss_pred             CcCCCCc--ceEEEEccc
Q 017640          270 KMCGPTG--IGFLFGKSD  285 (368)
Q Consensus       270 K~~g~~G--~G~l~~~~~  285 (368)
                      |++|++|  +|+++++++
T Consensus       203 K~l~g~G~~lGg~v~~~~  220 (418)
T TIGR01326       203 KYIGGHGTAIGGVIVDGG  220 (418)
T ss_pred             ccccCCccceEEEEEecc
Confidence            9999887  788777553

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PRK09275 aspartate aminotransferase; Provisional

Probab=99.88  E-value=4.8e-21  Score=185.22  Aligned_cols=204  Identities=14%  Similarity=0.100  Sum_probs=143.9

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc-----CC--CC--CCcEEEe
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI-----NA--SD--SGEIVFT  135 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~-----~~--~~--~~~v~~t  135 (368)
                      .+++.+..+.++ .+|+.+.++. +.+... .++.          .....++|+++++.+     +.  .+  +++|++|
T Consensus       100 ~~~i~l~~g~p~~~~~~~v~e~~-~~~~~~-~Y~~----------~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT  167 (527)
T PRK09275        100 RDAVSYVRDQLGFDADEFVYELV-DGIIGD-NYPV----------PDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAV  167 (527)
T ss_pred             HHHHhhcCCCCCCCCCHHHHHHH-HHHhcC-CCCC----------CCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEe
Confidence            457888888888 5566777744 444321 1111          111224555555522     11  12  2489999


Q ss_pred             CCHHHHHHHHHHHccC-CCCCCCCEEEEcCCCCcccHHHHHHHHHHc--CCEEEEEeCCC--CCCCCHHHHHHhcccCce
Q 017640          136 KNATEAINLVAYSWGL-SNLKSGDEVILTVAEHHSAIVPWQLVAQKT--GANLKFLNLND--DESPDLDKLKEMLSRKTK  210 (368)
Q Consensus       136 ~g~t~a~~~~~~~~~~-~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~--g~~v~~v~~~~--~~~~d~~~l~~~l~~~~~  210 (368)
                      +|+++|+..++.++.. ..+++||+|++.+|.|+.    +...++..  +.+++.++.++  ++.+|+++|+++++++++
T Consensus       168 ~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~----Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~~tk  243 (527)
T PRK09275        168 EGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTP----YLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRDPSIK  243 (527)
T ss_pred             CCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHH----HHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCCCCC
Confidence            9999999999886210 017999999999997766    44444444  45566666542  478999999999999999


Q ss_pred             EEEEcccccccccccC---HHHHHHHHHh--cCCEEEEecCCcCCccc-ccC-C-CCCccEEEecCcCcCCCCc--ceEE
Q 017640          211 LVVIHHISNMLASILP---IEEIVHWSHD--VGAKVLVDACQSVPHMV-VDV-Q-GLDADFLVASSHKMCGPTG--IGFL  280 (368)
Q Consensus       211 ~v~~~~~~n~tG~~~~---l~~i~~l~~~--~g~~li~D~a~~~~~~~-~~~-~-~~~~d~~~~s~~K~~g~~G--~G~l  280 (368)
                      +|++++|+||||.+++   +++|+++|++  ++++||+|++|..-... ..+ . ..+..+++.|+||.||.+|  +||+
T Consensus       244 ai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s~~~~~~~~~I~v~SfSK~f~mtG~RlG~i  323 (527)
T PRK09275        244 ALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDDFRSLFAVLPYNTILVYSFSKYFGATGWRLGVI  323 (527)
T ss_pred             EEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcccccCHHHhCCCCEEEEeehhhhccCcHhHHhhh
Confidence            9999999999999999   7788888964  59999999999732111 111 1 1246789999999999999  9999


Q ss_pred             EEccc
Q 017640          281 FGKSD  285 (368)
Q Consensus       281 ~~~~~  285 (368)
                      +++++
T Consensus       324 ~~~~~  328 (527)
T PRK09275        324 ALHED  328 (527)
T ss_pred             hcCch
Confidence            99887

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=99.88  E-value=9e-21  Score=176.28  Aligned_cols=202  Identities=14%  Similarity=0.098  Sum_probs=149.7

Q ss_pred             HHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCC
Q 017640          115 LARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDE  194 (368)
Q Consensus       115 ~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~  194 (368)
                      .+|++++++++.+   +|++|+|+++++.++..      +.+||+|++.+|+|+.    +...++..|++++.++.+   
T Consensus        53 ~Lr~~ia~~~~~~---~I~it~Gs~~al~~~~~------~~~gd~v~v~~P~y~~----~~~~~~~~g~~~~~v~~~---  116 (330)
T PRK05664         53 GLEAAARAYYGAP---QLLPVAGSQAAIQALPR------LRAPGRVGVLSPCYAE----HAHAWRRAGHQVRELDEA---  116 (330)
T ss_pred             HHHHHHHHHhCCC---CEEECcCHHHHHHHHHH------ccCCCEEEEcCCChHH----HHHHHHHcCCeEEEechh---
Confidence            7899999999863   89999999999998852      5799999999996666    566677789999999863   


Q ss_pred             CCCHHHHHHhcccCceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc--c-ccCCCCCccEEEecC
Q 017640          195 SPDLDKLKEMLSRKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM--V-VDVQGLDADFLVASS  268 (368)
Q Consensus       195 ~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~--~-~~~~~~~~d~~~~s~  268 (368)
                           ++++.+ ++++++++++|+||||.+++   +++|+++|+++|++||+|++|.....  + ..+...+..++++|+
T Consensus       117 -----~~~~~~-~~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~~~~~~~vi~~~Sf  190 (330)
T PRK05664        117 -----EVEAAL-DSLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAACAHRPGLIVLRSF  190 (330)
T ss_pred             -----hHhhhh-cCCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCCcccccccccCCCEEEEeec
Confidence                 355555 36788999999999999999   55666777899999999999963321  1 122222356899999


Q ss_pred             cCcCCCCc--ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHH
Q 017640          269 HKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIH  346 (368)
Q Consensus       269 ~K~~g~~G--~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~  346 (368)
                      ||.||.+|  +||+++++++++.+......                       .+.+.....++..+++....  .+.++
T Consensus       191 SK~~gl~GlRiG~~v~~~~l~~~~~~~~~~-----------------------~~~~~~~~~~~~~~L~~~~~--~~~~~  245 (330)
T PRK05664        191 GKFFGLAGARLGFVLAEPALLRALAELLGP-----------------------WTVSGPTRWLAQAALADTPW--QRRQR  245 (330)
T ss_pred             cccccCCCcceEEEEeCHHHHHHHHHhcCC-----------------------CCCCHHHHHHHHHHHhChHH--HHHHH
Confidence            99999888  99999999888776643211                       12334444555555543221  35567


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 017640          347 AYEVKWIICSIIVIQER  363 (368)
Q Consensus       347 ~~~~~l~~~l~~~l~~~  363 (368)
                      ++..+..+++.+.|++.
T Consensus       246 ~~~~~~r~~l~~~L~~~  262 (330)
T PRK05664        246 ERLLAASQRLAALLRRH  262 (330)
T ss_pred             HHHHHHHHHHHHHHHHC
Confidence            77777788888888764

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.88  E-value=1.7e-20  Score=177.96  Aligned_cols=248  Identities=14%  Similarity=0.187  Sum_probs=170.6

Q ss_pred             CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCC
Q 017640           78 QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSG  157 (368)
Q Consensus        78 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~g  157 (368)
                      ...+.+++++.+.++++..+...+...  ++......++++++|+++|.+  +.+++++|.+ ++..++.++    +++|
T Consensus        12 ~~~~~~~~~~~~a~~~~g~~~~~sr~~--yg~~~~~~~LE~~lA~~~g~e--~al~~~sG~~-a~~~~i~~l----~~~G   82 (392)
T PLN03227         12 SSSPTLRQTALESLSHYGCGSCGPRGF--YGTIDAHLELEQCMAEFLGTE--SAILYSDGAS-TTSSTVAAF----AKRG   82 (392)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCcccccc--cCChHHHHHHHHHHHHHhCCC--cEEEecCcHH-HHHHHHHHh----CCCC
Confidence            356789999999988865443322222  333457889999999999987  3677777765 555777777    8999


Q ss_pred             CEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcc-----------cCceEEEEcccccccccccC
Q 017640          158 DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS-----------RKTKLVVIHHISNMLASILP  226 (368)
Q Consensus       158 d~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~-----------~~~~~v~~~~~~n~tG~~~~  226 (368)
                      |.|++.++.|.+....+    ...+.+++.++.. +. -|++.+.+.+.           +++++|+++.++|++|.+.|
T Consensus        83 D~Vl~~~~~h~s~~~~~----~l~~~~~~~~~~~-d~-~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~  156 (392)
T PLN03227         83 DLLVVDRGVNEALLVGV----SLSRANVRWFRHN-DM-KDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAP  156 (392)
T ss_pred             CEEEEeccccHHHHHHH----HHcCCeEEEeCCC-CH-HHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccC
Confidence            99999999999876543    3346788877765 11 12333333332           35789999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEEecCCcCCccc---------ccCC-CCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccC
Q 017640          227 IEEIVHWSHDVGAKVLVDACQSVPHMV---------VDVQ-GLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGG  296 (368)
Q Consensus       227 l~~i~~l~~~~g~~li~D~a~~~~~~~---------~~~~-~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g  296 (368)
                      +++|.++|++||+++++|++|++|..-         +.+. ..+.|+++.|++|.+|+.| |++++++++++.++....+
T Consensus       157 l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g~~g-g~v~~~~~~~~~~~~~~~~  235 (392)
T PLN03227        157 LKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFGSVG-GMTVGSEEVVDHQRLSGSG  235 (392)
T ss_pred             HHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhhhccC-cEEecCHHHHHHHHHhCcC
Confidence            999999999999999999999865431         1111 2356999999999988775 7888888877655422111


Q ss_pred             CcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHh
Q 017640          297 GEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~  362 (368)
                                        ..|. +..+.....+...++....+  .+.+.++..++.+++.+.|++
T Consensus       236 ------------------~~~~-~~~~p~~~~aa~~al~~~~~--~~~~~~~l~~~~~~l~~~L~~  280 (392)
T PLN03227        236 ------------------YCFS-ASAPPFLAKADATATAGELA--GPQLLNRLHDSIANLYSTLTN  280 (392)
T ss_pred             ------------------cccc-CCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHh
Confidence                              1222 22223233333344443332  356677888888888888874

>PRK05967 cystathionine beta-lyase; Provisional

Probab=99.88  E-value=3e-21  Score=181.27  Aligned_cols=171  Identities=13%  Similarity=0.180  Sum_probs=141.8

Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEE
Q 017640          108 KATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKF  187 (368)
Q Consensus       108 ~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~  187 (368)
                      ...+..+.+++.++.+-+.+   ..++++++++|+..++.++    +++||+|+++++.|++....+...+++.|+++..
T Consensus        61 ~gnPt~~~Le~~la~le~~~---~~v~~sSG~aAi~~~l~al----l~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~  133 (395)
T PRK05967         61 RGTPTTDALCKAIDALEGSA---GTILVPSGLAAVTVPFLGF----LSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEY  133 (395)
T ss_pred             CCChHHHHHHHHHHHHhCCC---CEEEECcHHHHHHHHHHHh----cCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEE
Confidence            34566668999999887754   3356666789999999988    8999999999999999876666778889999999


Q ss_pred             EeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEec
Q 017640          188 LNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVAS  267 (368)
Q Consensus       188 v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s  267 (368)
                      ++..     +.+.+++++++++++|++++|+||++.+.|+++|+++|+++|+++++|++++.+.. ...-+++.|+++.|
T Consensus       134 vd~~-----~~e~l~~al~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~~-~~pl~~GaDivv~S  207 (395)
T PRK05967        134 YDPE-----IGAGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPLY-FRPLDFGVDISIHA  207 (395)
T ss_pred             eCCC-----CHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCccCcee-cChhHcCCCEEEEe
Confidence            8654     45789999999999999999999999999999999999999999999999987643 23335789999999


Q ss_pred             CcCcCCCCc---ceEEEEcccccccCC
Q 017640          268 SHKMCGPTG---IGFLFGKSDLLSAMP  291 (368)
Q Consensus       268 ~~K~~g~~G---~G~l~~~~~li~~l~  291 (368)
                      .+|++++.|   +|+++.++++.+.++
T Consensus       208 ~tKy~~Gh~d~~~G~v~~~~~~~~~l~  234 (395)
T PRK05967        208 ATKYPSGHSDILLGTVSANEKCWPQLL  234 (395)
T ss_pred             cccccCCCCCeeEEEEEcCHHHHHHHH
Confidence            999887766   787777766544443

>PRK07671 cystathionine beta-lyase; Provisional

Probab=99.87  E-value=3.6e-21  Score=181.40  Aligned_cols=217  Identities=18%  Similarity=0.175  Sum_probs=157.7

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      .+...++++.++++.|.+.  . +++++++.++..++ .+    +++||+|+++++.|.+.+..+...++..|+++++++
T Consensus        49 ~p~~~~Le~~lA~l~g~~~--~-~~~~sG~aai~~~~-~~----l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~  120 (377)
T PRK07671         49 NPTRAALEELIAVLEGGHA--G-FAFGSGMAAITAVM-ML----FSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVD  120 (377)
T ss_pred             ChHHHHHHHHHHHHhCCCc--e-EEeCCHHHHHHHHH-HH----hCCCCEEEECCCccchHHHHHHHHHhcCCeEEEEEC
Confidence            4556789999999999863  4 44555567887665 35    789999999999999887777777777899999997


Q ss_pred             CCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCc
Q 017640          190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH  269 (368)
Q Consensus       190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~  269 (368)
                      ..     |++++++++++++++|++++|+||||.+.++++|.++|+++|+++++|++++.+..... -..+.|+++.|++
T Consensus       121 ~~-----d~~~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~~~~~p-~~~g~Divv~S~s  194 (377)
T PRK07671        121 TS-----NLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQSP-ISLGADIVLHSAT  194 (377)
T ss_pred             CC-----CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCccccCCh-hhhCCeEEEecCc
Confidence            54     89999999999999999999999999999999999999999999999999986543211 2457899999999


Q ss_pred             CcCCCCc---ceEEEEcc-cccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 017640          270 KMCGPTG---IGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI  345 (368)
Q Consensus       270 K~~g~~G---~G~l~~~~-~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i  345 (368)
                      |++|+++   .|++++++ ++++.++.....                     ..++.+.....   ..++-++.  +...
T Consensus       195 K~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~---------------------~g~~~~~~~a~---l~~~~l~t--l~~R  248 (377)
T PRK07671        195 KYLGGHSDVVAGLVVVNSPELAEDLHFVQNS---------------------TGGILGPQDSW---LLLRGLKT--LGIR  248 (377)
T ss_pred             ccccCCccceeEEEEeCcHHHHHHHHHHHHh---------------------hcCCCCHHHHH---HHHcCcCh--HHHH
Confidence            9887543   67777654 565555422211                     01122221111   11221222  3334


Q ss_pred             HHHHHHHHHHHHHHHHhhcCC
Q 017640          346 HAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       346 ~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      .++..+.+..+.++|++++++
T Consensus       249 ~~~~~~na~~la~~L~~~~~v  269 (377)
T PRK07671        249 MEEHETNSRAIAEFLNNHPAV  269 (377)
T ss_pred             HHHHHHHHHHHHHHHHcCCCe
Confidence            556667888888888887653

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.87  E-value=1.7e-20  Score=177.82  Aligned_cols=260  Identities=16%  Similarity=0.150  Sum_probs=175.1

Q ss_pred             CcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCC
Q 017640           79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD  158 (368)
Q Consensus        79 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd  158 (368)
                      ..+...+++.+.+....       ...    .....++|+.+++++|.+   ..++++|+|+|+..++.++   .+++||
T Consensus         8 ~~~~~~~~v~~~~~~~~-------~~~----g~~~~~le~~la~~~g~~---~~v~~~sgt~al~~~l~al---~~~~Gd   70 (380)
T TIGR03588         8 IDQDDIDAVVEVLKSDF-------LTQ----GPTVPAFEEALAEYVGAK---YAVAFNSATSALHIACLAL---GVGPGD   70 (380)
T ss_pred             CCHHHHHHHHHHHhcCC-------ccC----ChhHHHHHHHHHHHHCCC---eEEEEcCHHHHHHHHHHHc---CCCCCC
Confidence            45556777776665321       111    233568999999999986   3456668899999999987   478999


Q ss_pred             EEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC-CCCCCHHHHHHhcc----cCceEEEEcccccccccccCHHHHHHH
Q 017640          159 EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLS----RKTKLVVIHHISNMLASILPIEEIVHW  233 (368)
Q Consensus       159 ~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~l~~i~~l  233 (368)
                      +|++++++|.+..    ..++..|++++++++++ ++.+|+++++++++    +++++|++++   ++|...++++|.++
T Consensus        71 ~Viv~~~~~~~~~----~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~t~~v~~~~---~~G~~~~~~~i~~l  143 (380)
T TIGR03588        71 RVWTTPITFVATA----NCALYCGAKVDFVDIDPDTGNIDEDALEKKLAAAKGKLPKAIVPVD---FAGKSVDMQAIAAL  143 (380)
T ss_pred             EEEeCCcchHHHH----HHHHHcCCEEEEEecCCCcCCcCHHHHHHHhhcccCCCceEEEEeC---CCCccCCHHHHHHH
Confidence            9999999887754    34456799999999964 57889999999998    7889888655   58999999999999


Q ss_pred             HHhcCCEEEEecCCcCCcccccCCCCCc----cEEEecCc--CcCCCCcceEEEEc-ccccccCCCcccCCcceeecccC
Q 017640          234 SHDVGAKVLVDACQSVPHMVVDVQGLDA----DFLVASSH--KMCGPTGIGFLFGK-SDLLSAMPPFLGGGEMISDVFLD  306 (368)
Q Consensus       234 ~~~~g~~li~D~a~~~~~~~~~~~~~~~----d~~~~s~~--K~~g~~G~G~l~~~-~~li~~l~~~~~g~~~~~~~~~~  306 (368)
                      |++||+++|+|++|++|.. ++....+.    |+.++|+|  |+++.+..|+++.+ +++.+++++...++.......  
T Consensus       144 ~~~~~~~lI~D~a~a~g~~-~~~~~~g~~~~~d~~~~S~~~~K~~~~~~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~--  220 (380)
T TIGR03588       144 AKKHGLKIIEDASHALGAE-YGGKPVGNCRYADATVFSFHPVKIITTAEGGAVTTNDEELAERMRLLRSHGITKDPLL--  220 (380)
T ss_pred             HHHcCCEEEEECCCcccCc-cCCEeCCCccccceEEEecCCCCcccccCceEEEECCHHHHHHHHHHHHCCCCCCccc--
Confidence            9999999999999999875 44444455    99999988  77764345666654 566666654433222111000  


Q ss_pred             CCCCCCCCCCCCCCCCCH---HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          307 HSTFADPPSRFEAGTPAI---GEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       307 ~~~~~~~~~~~~~gt~~~---~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      ..........++.++...   ..-+....++..++.  ++.+.++.+++++++.+.|.++++++
T Consensus       221 ~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~--l~~~~~~r~~~~~~~~~~L~~~~~~~  282 (380)
T TIGR03588       221 FEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKK--LDRFVAKRREIAARYDRLLKDLPYFT  282 (380)
T ss_pred             ccccccCcceeeeeccccccCccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence            000011111222111110   011111222222333  67888999999999999998876643

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PRK05968 hypothetical protein; Provisional

Probab=99.87  E-value=4.3e-21  Score=181.75  Aligned_cols=219  Identities=13%  Similarity=0.144  Sum_probs=164.1

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      .+..+++++.+++++|.+.  . +++++++.|+..++.++    +++||+|++..+.|.+++..+...++..|+++++++
T Consensus        62 ~p~~~~le~~lA~l~g~~~--a-v~~~sG~~Ai~~al~al----~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd  134 (389)
T PRK05968         62 NPTVRAFEEMLAKLEGAED--A-RGFASGMAAISSTVLSF----VEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVD  134 (389)
T ss_pred             ChhHHHHHHHHHHHhCCCc--E-EEECCHHHHHHHHHHHH----hCCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeC
Confidence            4557789999999999863  4 44566678999999887    899999999999999988878778888899999997


Q ss_pred             CCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCc
Q 017640          190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH  269 (368)
Q Consensus       190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~  269 (368)
                      .+     |++++++++ +++++|++++++|+++.+.++++|.++|++||+++++|++++.+...... ..+.|+++.|++
T Consensus       135 ~~-----d~~~l~~~i-~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~p~-~~g~Divv~S~t  207 (389)
T PRK05968        135 GR-----DEEAVAKAL-PGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQRPI-TLGVDLVIHSAS  207 (389)
T ss_pred             CC-----CHHHHHHhc-ccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhccCch-hcCCcEEEeecc
Confidence            65     889999988 67899999999999999999999999999999999999999876532122 357899999999


Q ss_pred             CcCCCCc---ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHH
Q 017640          270 KMCGPTG---IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIH  346 (368)
Q Consensus       270 K~~g~~G---~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~  346 (368)
                      |.++++|   +|+++.+++++++++.....+                   + .+..+......   .+..++.  +....
T Consensus       208 K~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~-------------------~-g~~~~~~~A~~---~l~~L~t--l~~r~  262 (389)
T PRK05968        208 KYLGGHSDTVAGVVAGSKEHIARINAEAYPY-------------------L-GAKLSPFEAWL---LLRGLRT--LPLRM  262 (389)
T ss_pred             ccccCCCCeEEEEEEECHHHHHHHHHHHHHh-------------------C-CCCCChHHHHH---HHcccCc--HHHHH
Confidence            9776543   688888888877665321100                   0 01222211122   2333333  34444


Q ss_pred             HHHHHHHHHHHHHHHhhcCCC
Q 017640          347 AYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       347 ~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      ++..+.+..+.++|+++++++
T Consensus       263 ~~~~~~a~~la~~L~~~p~v~  283 (389)
T PRK05968        263 KAHEASALEIARRLKAHPVVE  283 (389)
T ss_pred             HHHHHHHHHHHHHHHhCCCcc
Confidence            555666888888888887653

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=99.87  E-value=4.3e-21  Score=180.92  Aligned_cols=168  Identities=20%  Similarity=0.229  Sum_probs=138.0

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      .+....+++.++++.|.+.  . +++++++.|+.+++. +    +++||+|+++++.|++.+..+...++..|+++++++
T Consensus        49 ~p~~~~Le~~la~l~g~~~--a-l~~~SG~~Al~~~l~-~----l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd  120 (380)
T PRK06176         49 NPTRFALEELIADLEGGVK--G-FAFASGLAGIHAVFS-L----FQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIID  120 (380)
T ss_pred             ChhHHHHHHHHHHHhCCCC--E-EEECCHHHHHHHHHH-H----cCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcC
Confidence            4556689999999999763  3 555666779987664 5    689999999999999888778778888899999887


Q ss_pred             CCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCc
Q 017640          190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH  269 (368)
Q Consensus       190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~  269 (368)
                      ..     |++++++++++++++|++++++||+|.+.|+++|.++|++||+++++|++++.+...... .++.|++++|++
T Consensus       121 ~~-----d~e~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~~~~~p~-~~gaDivv~S~t  194 (380)
T PRK06176        121 TS-----DLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNPL-LLGADIVVHSGT  194 (380)
T ss_pred             CC-----CHHHHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCccccccCCcc-ccCCCEEEecCc
Confidence            64     899999999999999999999999999999999999999999999999999866542222 468999999999


Q ss_pred             CcCCCCc---ceEEEEcc-cccccCC
Q 017640          270 KMCGPTG---IGFLFGKS-DLLSAMP  291 (368)
Q Consensus       270 K~~g~~G---~G~l~~~~-~li~~l~  291 (368)
                      |+++++|   .|+++.++ ++.+.++
T Consensus       195 K~l~g~~d~~gG~vv~~~~~~~~~~~  220 (380)
T PRK06176        195 KYLGGHSDVVAGLVTTNNEALAQEIA  220 (380)
T ss_pred             eeccCCccceeeEEEecHHHHHHHHH
Confidence            9887554   67777754 4444443

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=99.87  E-value=9.5e-21  Score=182.94  Aligned_cols=209  Identities=15%  Similarity=0.080  Sum_probs=144.9

Q ss_pred             CCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHH-HHHHHHcCC--CCCC--cEEEeCCHHH
Q 017640           66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELAR-KKVAAFINA--SDSG--EIVFTKNATE  140 (368)
Q Consensus        66 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r-~~la~~~~~--~~~~--~v~~t~g~t~  140 (368)
                      ++++.+..+..+..++..++++.+.+... .++.      ..+..+..+++. +.+.+.++.  .+++  +|++|+|+++
T Consensus        94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~-~Y~~------p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~  166 (521)
T TIGR03801        94 RDIISYVIDQLGFDPDAFLYEMCDGIIGD-NYPV------PDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTA  166 (521)
T ss_pred             HHHHhhcCCCCCCCCCHHHHHHHHHhhcC-CCCC------CCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHH
Confidence            45788888888855556666665554221 1110      111122222322 333333332  2333  7999999999


Q ss_pred             HHHHHHHHcc-CCCCCCCCEEEEcCCCCcccHHHHHHHHHH--cCCEEEEEeCCC--C-----CCCCHHHHHHhcccCce
Q 017640          141 AINLVAYSWG-LSNLKSGDEVILTVAEHHSAIVPWQLVAQK--TGANLKFLNLND--D-----ESPDLDKLKEMLSRKTK  210 (368)
Q Consensus       141 a~~~~~~~~~-~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~--~g~~v~~v~~~~--~-----~~~d~~~l~~~l~~~~~  210 (368)
                      |+..++.++. ...+++||+|++.+|.|+..    ...++.  .|++++.++.++  +     +.+|.++++++++++++
T Consensus       167 al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y----~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~~~k  242 (521)
T TIGR03801       167 AMCYIFDSLKANELLKKGDKIALMTPIFTPY----LEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDPSIK  242 (521)
T ss_pred             HHHHHHHHHhHhhcCCCCCEEEEeCCCcHHH----HHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcCCCCc
Confidence            9999988721 00178999999999977773    333333  377888888753  2     78899999999888999


Q ss_pred             EEEEcccccccccccC---HHHHHHHHHhc--CCEEEEecCCcCCccc-ccC-C-CCCccEEEecCcCcCCCCc--ceEE
Q 017640          211 LVVIHHISNMLASILP---IEEIVHWSHDV--GAKVLVDACQSVPHMV-VDV-Q-GLDADFLVASSHKMCGPTG--IGFL  280 (368)
Q Consensus       211 ~v~~~~~~n~tG~~~~---l~~i~~l~~~~--g~~li~D~a~~~~~~~-~~~-~-~~~~d~~~~s~~K~~g~~G--~G~l  280 (368)
                      +|++++|+||||.+++   +++|+++|++|  +++||+|++|+.-... .++ . ..+..+++.|+||.||.+|  +||+
T Consensus       243 ai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~sl~~~~~~~vI~v~SfSK~fg~~G~RlG~i  322 (521)
T TIGR03801       243 ALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDDFRSLFAELPYNTIGVYSFSKYFGATGWRLGTI  322 (521)
T ss_pred             EEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcccccchhhhCCCCEEEEEcchhhccCchhhhhhh
Confidence            9999999999999999   77888889986  8999999999732111 111 1 1235789999999999999  9999


Q ss_pred             EEccc
Q 017640          281 FGKSD  285 (368)
Q Consensus       281 ~~~~~  285 (368)
                      +++++
T Consensus       323 ~~~~~  327 (521)
T TIGR03801       323 ALHKD  327 (521)
T ss_pred             hcCch
Confidence            99875

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=99.87  E-value=6.2e-21  Score=183.16  Aligned_cols=217  Identities=12%  Similarity=0.133  Sum_probs=140.4

Q ss_pred             CCeEEeccCCCCCCc---HHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----CCC-CCCcEEEeCC
Q 017640           66 KKLVYLDNAATSQKP---IAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS-DSGEIVFTKN  137 (368)
Q Consensus        66 ~~~i~l~~~~~~~~~---~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~-~~~~v~~t~g  137 (368)
                      ++.+.|..+.....+   +.+.+++.+.+........    ...+.......++|+++++++    |.+ ++++|++|+|
T Consensus        30 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~G  105 (416)
T PRK09440         30 PGAIMLGGGNPAHIPEMEDYFRDLLADLLASGKLTEA----LGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNG  105 (416)
T ss_pred             CCceeccCCCCCccCCHHHHHHHHHHHHhcCcccccc----cccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccC
Confidence            456888876654222   3445555544432100000    001111122336777777766    433 2359999999


Q ss_pred             HHHHHHHHHHHccCCCC-----CCCCEEEE-cCCCCcccHHHHHHHHHHcCCEEEEEeCCC---CCCCCHHHHHHhcccC
Q 017640          138 ATEAINLVAYSWGLSNL-----KSGDEVIL-TVAEHHSAIVPWQLVAQKTGANLKFLNLND---DESPDLDKLKEMLSRK  208 (368)
Q Consensus       138 ~t~a~~~~~~~~~~~~~-----~~gd~vl~-~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~---~~~~d~~~l~~~l~~~  208 (368)
                      +++++.+++.++    +     .+||.|++ .+|+|+.............+..+..++++.   ++.+|++.|+  +.++
T Consensus       106 a~~al~~~~~~l----~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~  179 (416)
T PRK09440        106 SQSAFFYLFNLF----AGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--IDED  179 (416)
T ss_pred             hHHHHHHHHHHH----hccccCCCCCeEEEecCCCchhhHHHhhccCceeecccccccccccccccCCCHHHcc--cCCC
Confidence            999999999988    5     36899999 799888754321110001112222333333   2568999987  4567


Q ss_pred             ceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcccc---cCC--CCCccEEEecCcCcCCCCc--ce
Q 017640          209 TKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMVV---DVQ--GLDADFLVASSHKMCGPTG--IG  278 (368)
Q Consensus       209 ~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~~~---~~~--~~~~d~~~~s~~K~~g~~G--~G  278 (368)
                      ++++++++|+||||.+++   +++|+++|++|+++||+|++|+.....+   +..  ..+..++++|+||. +.+|  +|
T Consensus       180 ~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~vI~~~SfSK~-~~pGlRiG  258 (416)
T PRK09440        180 TGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGIIFSEATPLWNPNIILCMSLSKL-GLPGVRCG  258 (416)
T ss_pred             ceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCcchhhcCccccCCeEEEeccccc-CCCcceEE
Confidence            899999999999999999   6788889999999999999997322111   111  12456889999996 8788  99


Q ss_pred             EEEEcccccccCCCc
Q 017640          279 FLFGKSDLLSAMPPF  293 (368)
Q Consensus       279 ~l~~~~~li~~l~~~  293 (368)
                      |+++++++++.+...
T Consensus       259 ~~i~~~~l~~~~~~~  273 (416)
T PRK09440        259 IVIADEEIIEALSNM  273 (416)
T ss_pred             EEeCCHHHHHHHHHH
Confidence            999999888776543

>PLN02509 cystathionine beta-lyase

Probab=99.87  E-value=7.4e-21  Score=182.06  Aligned_cols=216  Identities=19%  Similarity=0.162  Sum_probs=160.1

Q ss_pred             HHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeC
Q 017640          111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL  190 (368)
Q Consensus       111 ~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~  190 (368)
                      +..+++++.++++.|.+   ..++++|+++++..++ .+    +++||+|+++++.|.++...+.......|++++.++.
T Consensus       133 pt~~aLE~~lA~leg~e---~ai~~~SG~aAi~~il-~l----l~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd~  204 (464)
T PLN02509        133 PTRDALESLLAKLDKAD---RAFCFTSGMAALSAVT-HL----IKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT  204 (464)
T ss_pred             HHHHHHHHHHHHHhCCC---EEEEeCcHHHHHHHHH-HH----hCCCCEEEEcCCchhhHHHHHHHHHHHCCeEEEEeCC
Confidence            45778999999999865   4566677788886655 45    7899999999999988776666666788999998875


Q ss_pred             CCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcC
Q 017640          191 NDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK  270 (368)
Q Consensus       191 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K  270 (368)
                      .     |++++++++.+++++|++++++||+|.+.|+++|+++|++||+++++|++++.+...... ..+.|++++|++|
T Consensus       205 ~-----d~e~l~~ai~~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~~pl-~~gaDivv~S~tK  278 (464)
T PLN02509        205 T-----NLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLSRPL-ELGADIVMHSATK  278 (464)
T ss_pred             C-----CHHHHHHhCCcCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCccccccCChh-hcCCcEEEecCcc
Confidence            4     789999999999999999999999999999999999999999999999999877653222 4579999999999


Q ss_pred             cCCCC-c--ceEEEEcccc-cccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHH
Q 017640          271 MCGPT-G--IGFLFGKSDL-LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIH  346 (368)
Q Consensus       271 ~~g~~-G--~G~l~~~~~l-i~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~  346 (368)
                      +++.+ +  .|+++++++. .+.++......                     .+..+...   +...+.-++.  ++...
T Consensus       279 ~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~---------------------g~~l~p~~---A~l~lr~L~t--L~~R~  332 (464)
T PLN02509        279 FIAGHSDVMAGVLAVKGEKLAKEVYFLQNSE---------------------GSGLAPFD---CWLCLRGIKT--MALRI  332 (464)
T ss_pred             cccCCCccceeEEEeccHHHHHHHHHHHHhc---------------------CCCcCHHH---HHHHHhhhhh--HHHHH
Confidence            77654 3  7888876543 22222111100                     01112211   2233333333  35556


Q ss_pred             HHHHHHHHHHHHHHHhhcCC
Q 017640          347 AYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       347 ~~~~~l~~~l~~~l~~~~g~  366 (368)
                      ++..+.+.++.++|++++.+
T Consensus       333 ~r~~~nA~~la~~L~~~p~V  352 (464)
T PLN02509        333 EKQQENARKIAMYLSSHPRV  352 (464)
T ss_pred             HHHHHHHHHHHHHHhcCCCc
Confidence            77888889999999888764

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.87  E-value=1.3e-20  Score=179.80  Aligned_cols=163  Identities=19%  Similarity=0.297  Sum_probs=137.6

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      .+..+.+++.++++.|.+   ..+++++++.|+..++.++    +++||+|++....|.+++..+...+++.|+++++++
T Consensus        68 ~p~~~~Le~~lA~l~g~~---~av~~sSG~aAi~~al~al----l~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vd  140 (436)
T PRK07812         68 NPTQDVVEQRIAALEGGV---AALLLASGQAAETFAILNL----AGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVE  140 (436)
T ss_pred             CchHHHHHHHHHHHhCCC---eEEEEccHHHHHHHHHHHH----hCCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEEC
Confidence            345668999999999986   4577778889999999888    899999999999998887766666677788888885


Q ss_pred             CCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCc
Q 017640          190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH  269 (368)
Q Consensus       190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~  269 (368)
                       +.   .|++++++++++++++|++++++||+|.+.|+++|.++||++|+++++|++++.+.....+ .++.|+++.|++
T Consensus       141 -d~---~d~e~l~~ai~~~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~~~pl-~~GaDivv~S~t  215 (436)
T PRK07812        141 -DP---DDLDAWRAAVRPNTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYLIRPL-EHGADIVVHSAT  215 (436)
T ss_pred             -CC---CCHHHHHHhCCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCCch-hcCCCEEEEecc
Confidence             22   2899999999999999999999999999999999999999999999999999877653223 568999999999


Q ss_pred             CcCCCCc--ceEEEEcc
Q 017640          270 KMCGPTG--IGFLFGKS  284 (368)
Q Consensus       270 K~~g~~G--~G~l~~~~  284 (368)
                      |++|+.|  +|.+++..
T Consensus       216 K~lgg~G~~i~G~vv~~  232 (436)
T PRK07812        216 KYLGGHGTAIAGVIVDG  232 (436)
T ss_pred             cccCCCCCeEEEEEEcC
Confidence            9988887  55555543

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.87  E-value=5.1e-21  Score=182.61  Aligned_cols=160  Identities=20%  Similarity=0.281  Sum_probs=133.3

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      .+..+++++.++++.|.+   ..++++++++|+..++.++    +++||+|++..+.|++++..+....+..|+++.+++
T Consensus        57 ~pt~~~Le~~lA~l~g~~---~~l~~ssG~~Ai~~al~al----~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d  129 (425)
T PRK06084         57 NPTNDVLEQRVAALEGGV---GALAVASGMAAITYAIQTI----AEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAA  129 (425)
T ss_pred             CchHHHHHHHHHHHhCCC---ceeEehhHHHHHHHHHHHH----hCCCCEEEEeCCCcchHHHHHHHhcccceeEEEEEC
Confidence            445668999999999965   4567788889999999988    889999999999999877666555455677887777


Q ss_pred             CCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCc
Q 017640          190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH  269 (368)
Q Consensus       190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~  269 (368)
                      ..     |++++++++++++++|++++++||||.+.|+++|.++|+++|+++|+|++++.+... ..-..+.|+++.|++
T Consensus       130 ~~-----d~e~le~ai~~~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~~~-~p~~~gaDivv~S~t  203 (425)
T PRK06084        130 HD-----DIAALEALIDERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVLC-RPFEHGADIVVHSLT  203 (425)
T ss_pred             CC-----CHHHHHHHhccCCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccC-ChhhcCCCEEEECch
Confidence            54     899999999999999999999999999999999999999999999999999976542 222468999999999


Q ss_pred             CcCCCCc--ceEEEE
Q 017640          270 KMCGPTG--IGFLFG  282 (368)
Q Consensus       270 K~~g~~G--~G~l~~  282 (368)
                      |++|++|  +|.+++
T Consensus       204 K~l~G~g~~~gG~v~  218 (425)
T PRK06084        204 KYIGGHGTSIGGIVV  218 (425)
T ss_pred             hcccccccceeEEEE
Confidence            9988766  344444

>PRK05939 hypothetical protein; Provisional

Probab=99.87  E-value=9.7e-21  Score=179.29  Aligned_cols=162  Identities=15%  Similarity=0.229  Sum_probs=136.6

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEE
Q 017640          109 ATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL  188 (368)
Q Consensus       109 ~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v  188 (368)
                      ..+..+.+++.++++.|...  . +.+++++.|+..++.++    +++||+|+++++.|+++...+.. .+..|++++++
T Consensus        45 g~p~~~~lE~~la~leg~~~--~-v~~ssG~~Ai~~~l~al----l~~Gd~Vv~~~~~y~~t~~~~~~-l~~~G~~v~~v  116 (397)
T PRK05939         45 GTPTTAALEAKITKMEGGVG--T-VCFATGMAAIAAVFLTL----LRAGDHLVSSQFLFGNTNSLFGT-LRGLGVEVTMV  116 (397)
T ss_pred             CCHHHHHHHHHHHHHhCCCe--E-EEeCCHHHHHHHHHHHH----cCCCCEEEECCCccccHHHHHHH-HHhcCCEEEEE
Confidence            34667789999999999873  4 44555589999999888    89999999999999887665544 56789999999


Q ss_pred             eCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecC
Q 017640          189 NLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASS  268 (368)
Q Consensus       189 ~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~  268 (368)
                      +..     |++++++++++++++|++++++||||.+.|+++|+++|+++|+++++|++++.+.. ++....+.|+++.|+
T Consensus       117 ~~~-----d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~~-~~~~~~gaDivv~S~  190 (397)
T PRK05939        117 DAT-----DVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPWL-FRPKDVGASLVINSL  190 (397)
T ss_pred             CCC-----CHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCcccccc-cCccccCCEEEEecC
Confidence            875     89999999999999999999999999999999999999999999999999987643 455556899999999


Q ss_pred             cCcCCCCc--ceEEEEcc
Q 017640          269 HKMCGPTG--IGFLFGKS  284 (368)
Q Consensus       269 ~K~~g~~G--~G~l~~~~  284 (368)
                      +|++++.|  +|.+++.+
T Consensus       191 sK~~~g~g~~igg~v~~~  208 (397)
T PRK05939        191 SKYIAGHGNALGGAVTDT  208 (397)
T ss_pred             eecccCCCCeEEEEEecC
Confidence            99988777  56665543

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.87  E-value=8.2e-21  Score=181.62  Aligned_cols=159  Identities=21%  Similarity=0.286  Sum_probs=138.0

Q ss_pred             HHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeC
Q 017640          111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL  190 (368)
Q Consensus       111 ~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~  190 (368)
                      +....+++.++++.|.+   ..++++++++|+.+++.++    +++||+|+++.+.|.+....+...++..|++++.++.
T Consensus        63 p~~~~le~~lA~l~g~~---~al~~~SG~~Ai~~al~al----l~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~  135 (427)
T PRK05994         63 PTNAVLEERVAALEGGT---AALAVASGHAAQFLVFHTL----LQPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADA  135 (427)
T ss_pred             ccHHHHHHHHHHHhCCC---cEEEEcCHHHHHHHHHHHH----hCCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECC
Confidence            44568999999999986   4578888899999999988    8999999999999999887777777888999999986


Q ss_pred             CCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcC
Q 017640          191 NDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK  270 (368)
Q Consensus       191 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K  270 (368)
                      .     |++++++++++++++|++++++||+|.+.|+++|.++|++||+++++|++++.+... ..-..++|+++.|++|
T Consensus       136 ~-----d~~~l~~ai~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~~~~-~pl~~gaDivv~S~tK  209 (427)
T PRK05994        136 D-----DPASFERAITPRTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYLI-RPIEHGADIVVHSLTK  209 (427)
T ss_pred             C-----CHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCccccccC-CccccCCcEEEEcCcc
Confidence            5     899999999999999999999999999999999999999999999999999977543 2334689999999999


Q ss_pred             cCCCCc--ceEEEE
Q 017640          271 MCGPTG--IGFLFG  282 (368)
Q Consensus       271 ~~g~~G--~G~l~~  282 (368)
                      ++|++|  +|.+++
T Consensus       210 ~lgg~~~~~gG~v~  223 (427)
T PRK05994        210 FLGGHGNSMGGIIV  223 (427)
T ss_pred             ccCCCCCcEEEEEE
Confidence            888765  555554

>PLN02880 tyrosine decarboxylase

Probab=99.87  E-value=8e-21  Score=183.98  Aligned_cols=287  Identities=15%  Similarity=0.115  Sum_probs=182.9

Q ss_pred             EeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCC------CcEEEeCCHHHHHH
Q 017640           70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDS------GEIVFTKNATEAIN  143 (368)
Q Consensus        70 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~------~~v~~t~g~t~a~~  143 (368)
                      |+++-..++.++.+...+....  +  |.....+..++...++.+.+.+++++++|.+..      ...++|+|+|+++.
T Consensus        85 f~~~~~~~~~~~~~lad~l~~~--~--n~~~~~~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl  160 (490)
T PLN02880         85 YFAYYPSNSSVAGFLGEMLSAG--L--NIVGFSWITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVL  160 (490)
T ss_pred             eeEeccCCCcHHHHHHHHHHHh--h--ccCCcccccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHH
Confidence            5555444444555444442221  2  222233445667788899999999999999853      24789999999999


Q ss_pred             HHHHHccCCCCC-------CCCEEEEcCCCCcccHHHHHHHHHHcCC---EEEEEeCCC--CCCCCHHHHHHhccc----
Q 017640          144 LVAYSWGLSNLK-------SGDEVILTVAEHHSAIVPWQLVAQKTGA---NLKFLNLND--DESPDLDKLKEMLSR----  207 (368)
Q Consensus       144 ~~~~~~~~~~~~-------~gd~vl~~~~~~~s~~~~~~~~~~~~g~---~v~~v~~~~--~~~~d~~~l~~~l~~----  207 (368)
                      .++.+.+....+       +.-.|++++..|+|    +.+.+...|.   .++.||.++  ++.+|++.|+++|.+    
T Consensus       161 ~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~S----v~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~  236 (490)
T PLN02880        161 VVLLAARDRVLRKVGKNALEKLVVYASDQTHSA----LQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSS  236 (490)
T ss_pred             HHHHHHHHHHHHHhcccccCCeEEEEcCCchHH----HHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHC
Confidence            888765321111       12256678888888    4556666687   488999875  578999999999964    


Q ss_pred             --CceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccc-----cCCC-CCccEEEecCcCc-CCCCcce
Q 017640          208 --KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVV-----DVQG-LDADFLVASSHKM-CGPTGIG  278 (368)
Q Consensus       208 --~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~-----~~~~-~~~d~~~~s~~K~-~g~~G~G  278 (368)
                        .+-+|+.+..++.||.+.|+++|+++|++||+++++|+||+.+....     .+.. .++|.++.++||+ +.|.|+|
T Consensus       237 g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g  316 (490)
T PLN02880        237 GLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCS  316 (490)
T ss_pred             CCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccEE
Confidence              35788999999999999999999999999999999999999765422     1232 3689999999995 5688999


Q ss_pred             EEEEcccccccCCCcccCCcceeecccC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 017640          279 FLFGKSDLLSAMPPFLGGGEMISDVFLD-HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSI  357 (368)
Q Consensus       279 ~l~~~~~li~~l~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~  357 (368)
                      ++++++.. ...++...++......... ...+.......+.|...  ..+.+..+++.+-..|+.++.++..++++++.
T Consensus       317 ~llvr~~~-~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~--~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~  393 (490)
T PLN02880        317 LLWVKDRN-ALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRF--RSLKLWMVLRLYGVENLQSYIRNHIKLAKEFE  393 (490)
T ss_pred             EEEEeCHH-HHHHHHccCHHHhcCccccccCCCChhccCcCCCCcc--cHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            99998632 1111111111110000000 00000001112222221  11233344444433344444444459999999


Q ss_pred             HHHHhhcCCC
Q 017640          358 IVIQERHNTT  367 (368)
Q Consensus       358 ~~l~~~~g~t  367 (368)
                      +.|.+.++++
T Consensus       394 ~~l~~~~~~e  403 (490)
T PLN02880        394 QLVAQDSRFE  403 (490)
T ss_pred             HHHhcCCCEE
Confidence            9999888765

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.87  E-value=4e-20  Score=174.27  Aligned_cols=195  Identities=16%  Similarity=0.148  Sum_probs=148.1

Q ss_pred             CcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCC
Q 017640           79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD  158 (368)
Q Consensus        79 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd  158 (368)
                      ..+...+++.+.+....       .. +  ..+..+++++.+++++|.+   ++++|+|+|+|+.+++.++   .+++||
T Consensus         9 ~~~~e~~a~~~~~~~~~-------~~-~--~g~~~~~~e~~la~~~g~~---~~v~~~sgt~aL~~~l~al---~~~pGd   72 (376)
T TIGR02379         9 VTGQELEYIAEAISEGK-------LS-G--DGPFSRRCETWLENRTGTK---KALLTPSCTAALEMAALLL---DIQPGD   72 (376)
T ss_pred             CCHHHHHHHHHHHHcCC-------cc-C--CcHHHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHc---CCCCcC
Confidence            45666777777665411       10 0  1345668889999998875   7899999999999999887   478999


Q ss_pred             EEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC-CCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhc
Q 017640          159 EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDV  237 (368)
Q Consensus       159 ~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~  237 (368)
                      +|++++++|.++...+    ...|+++++++++++ +.+|++++++++++++++|+.   ++++|...++++|.++|++|
T Consensus        73 ~Viv~~~t~~~~~~~~----~~~G~~~v~vd~d~~~~~~d~~~le~~i~~~tk~Iip---~~~~G~~~d~~~I~~la~~~  145 (376)
T TIGR02379        73 EVIMPSYTFVSTANAF----VLRGAKIVFVDIRPDTMNIDETLIESAITHRTKAIVP---VHYAGVACDMDTIMALANKH  145 (376)
T ss_pred             EEEECCCCcHHHHHHH----HHcCCEEEEEecCCCcCCCCHHHHHHhcCcCceEEEE---eCCCCCccCHHHHHHHHHHC
Confidence            9999999988865444    455999999999866 689999999999999999874   45799999999999999999


Q ss_pred             CCEEEEecCCcCCcccccCCCCC--ccEEEecCcC--cCCCC-cceEEEEc-ccccccCCCcccCC
Q 017640          238 GAKVLVDACQSVPHMVVDVQGLD--ADFLVASSHK--MCGPT-GIGFLFGK-SDLLSAMPPFLGGG  297 (368)
Q Consensus       238 g~~li~D~a~~~~~~~~~~~~~~--~d~~~~s~~K--~~g~~-G~G~l~~~-~~li~~l~~~~~g~  297 (368)
                      |++||+|++|+.+.. .+-...+  .|+.++|+++  .+.+. .+|+++++ +++.+++++....|
T Consensus       146 ~i~vIeDaa~~~g~~-~~~~~~g~~~~~~~fSf~~~K~l~~g~~gG~v~~~~~~~~~~~~~~~~~g  210 (376)
T TIGR02379       146 QLFVIEDAAQGVMST-YKGRALGSIGHLGTFSFHETKNYTSGGEGGALLINDQAFIERAEIIREKG  210 (376)
T ss_pred             CCEEEEECccccCCc-cCCcccCCCCCEEEEeCCCCCcCcccCCceEEEECCHHHHHHHHHHHHhC
Confidence            999999999998764 3322223  3677777765  34432 24776665 67888877665433

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.87  E-value=1.1e-20  Score=180.25  Aligned_cols=167  Identities=19%  Similarity=0.249  Sum_probs=138.0

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEE
Q 017640          107 AKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLK  186 (368)
Q Consensus       107 ~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~  186 (368)
                      ....+..+.+++.++++.|.+  +.|++++| ++|+.+++.++    +++||+|++++..|.++...+...+++.|++++
T Consensus        65 r~~~pt~~~le~~la~l~g~~--~~v~fsSG-~~Ai~~al~~l----l~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~  137 (437)
T PRK05613         65 RLTNPTVEALENRIASLEGGV--HAVAFASG-QAAETAAILNL----AGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVT  137 (437)
T ss_pred             CccChHHHHHHHHHHHHhCCC--eEEEeCCH-HHHHHHHHHHh----cCCCCEEEECCCccHHHHHHHHHHHHhcCeEEE
Confidence            334566778999999999985  25555555 57888888877    799999999999999987667677788899999


Q ss_pred             EEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEe
Q 017640          187 FLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVA  266 (368)
Q Consensus       187 ~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~  266 (368)
                      +++ +++   |++.+++++++++++|+++++.||+|.+.|+++|.++|+++|+++++|++++.|.. .+...+++|++++
T Consensus       138 ~vd-~~~---d~e~l~~~l~~~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a~g~~-~~p~~~GaDivv~  212 (437)
T PRK05613        138 FVE-NPD---DPESWQAAVQPNTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAAL-VRPLELGADVVVA  212 (437)
T ss_pred             EEC-CCC---CHHHHHHhCCccCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCccccc-cChHHhCCCEEEe
Confidence            997 322   78999999999999999999999999999999999999999999999999988765 3333568999999


Q ss_pred             cCcCcCCCCc---ceEEEEccc
Q 017640          267 SSHKMCGPTG---IGFLFGKSD  285 (368)
Q Consensus       267 s~~K~~g~~G---~G~l~~~~~  285 (368)
                      |+||++++.|   .|+++.+.+
T Consensus       213 S~~K~l~G~gd~~gG~vv~~~~  234 (437)
T PRK05613        213 SLTKFYTGNGSGLGGVLIDGGK  234 (437)
T ss_pred             eccceecCCCcceeEEEEecCc
Confidence            9999998876   455554444

>PRK07049 methionine gamma-lyase; Validated

Probab=99.87  E-value=9.1e-21  Score=181.16  Aligned_cols=218  Identities=12%  Similarity=0.120  Sum_probs=160.6

Q ss_pred             HHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeC
Q 017640          111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL  190 (368)
Q Consensus       111 ~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~  190 (368)
                      .....+++.+|++.|.+   ++++++|+++|+..++.++    +++||.|++.+|.|..+...+...++..|++++.++.
T Consensus        83 Pt~~~Le~~lA~leg~~---~~iv~~sG~~Ai~~~l~al----~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~~v~~~~  155 (427)
T PRK07049         83 PNSEIVEDRLAVYEGAE---SAALFSSGMSAIATTLLAF----VRPGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFAD  155 (427)
T ss_pred             cCHHHHHHHHHHHhCCC---cEEEEccHHHHHHHHHHHH----hCCCCEEEEcCCCcccHHHHHHHHHHhcCcEEEEEeC
Confidence            34458999999999865   6788888889999999988    8999999999999998776656666778998766652


Q ss_pred             CCCCCCCHHHHHHhcc-----cCceEEEEcccccccccccCHHHHHHHHHh------cCCEEEEecCCcCCcccccCCCC
Q 017640          191 NDDESPDLDKLKEMLS-----RKTKLVVIHHISNMLASILPIEEIVHWSHD------VGAKVLVDACQSVPHMVVDVQGL  259 (368)
Q Consensus       191 ~~~~~~d~~~l~~~l~-----~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~------~g~~li~D~a~~~~~~~~~~~~~  259 (368)
                      .    .|++.+++++.     +++++|++++|+||||.++|+++|.+++++      +++++++|+++..+...-.+ ..
T Consensus       156 ~----~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~pl-~~  230 (427)
T PRK07049        156 G----LSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQKPL-EH  230 (427)
T ss_pred             C----CCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccCCcc-cc
Confidence            2    36677776663     478999999999999999999999999987      89999999998644321112 34


Q ss_pred             CccEEEecCcCcCC-CCc--ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 017640          260 DADFLVASSHKMCG-PTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY  336 (368)
Q Consensus       260 ~~d~~~~s~~K~~g-~~G--~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~  336 (368)
                      +.|+++.|++|.+| .+|  +|+++.++++++.++......                     .++.+......+..+++ 
T Consensus       231 g~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~~~~~~---------------------g~~ls~~~a~l~~r~L~-  288 (427)
T PRK07049        231 GADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRALRSAI---------------------GTQLDPHSCWMLGRSLE-  288 (427)
T ss_pred             CCCEEEEcCceeecCCCCcEEEEEECCHHHHHHHHHHHHhc---------------------CCCCCHHHHHHHHcCCC-
Confidence            68999999999887 466  899998888877665432211                     11333333333333333 


Q ss_pred             HHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          337 LSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       337 ~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                        .  +....++..+.+..+.++|++++++
T Consensus       289 --t--l~~R~~~~~~~a~~la~~L~~~p~V  314 (427)
T PRK07049        289 --T--LVLRMERANRNARAVAEFLRDHPKV  314 (427)
T ss_pred             --h--HHHHHHHHHHHHHHHHHHHHhCCCc
Confidence              3  2333455577888888888888764

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.87  E-value=1.4e-20  Score=160.22  Aligned_cols=271  Identities=18%  Similarity=0.199  Sum_probs=199.0

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhh-----HHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLS-----AKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      .+.|++|.--.+ ..+++.++++.++-+.+..     ..++.     .-..+-+.++.+.+++++|++   .+-+|+|+.
T Consensus        15 r~~iNv~PiQrGGiLt~eArkal~E~gDGYSv-----CD~C~~Grldei~kPpI~~F~~dlaeFlg~D---~~R~t~GAR   86 (382)
T COG1103          15 RGFINVNPIQRGGILTEEARKALLEWGDGYSV-----CDFCLEGRLDEITKPPIKDFLEDLAEFLGMD---EVRVTAGAR   86 (382)
T ss_pred             cCccccChhhccCcCCHHHHHHHHHhcCCcch-----hhhhccCccccccCCcHHHHHHHHHHHhCCc---eeeecccch
Confidence            355777765544 7788888888777553321     11221     112234667778899999996   778999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC--CCCCCCHHHHHHhccc-------Cce
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDESPDLDKLKEMLSR-------KTK  210 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~l~~-------~~~  210 (368)
                      ++=..++.++    +++||.|++....|++++.+    +++.|.++..||..  +++.++++.+.+.|++       .+.
T Consensus        87 e~KfavMhal----~~~gd~vV~D~~aHYttyvA----AEragl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~  158 (382)
T COG1103          87 EAKFAVMHAL----CKEGDWVVVDSLAHYTTYVA----AERAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPA  158 (382)
T ss_pred             hhHHHHHHHh----ccCCCEEEEcCcchHHHHHH----HHhcCCeEEecCCCCCCceEecHHHHHHHHHHHHhccCCCce
Confidence            9999999999    99999999999999987654    56679999999965  5688899888777742       368


Q ss_pred             EEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCc-ceEEEEccccccc
Q 017640          211 LVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTG-IGFLFGKSDLLSA  289 (368)
Q Consensus       211 ~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G-~G~l~~~~~li~~  289 (368)
                      +.+++++...-|...+.+.++++|+++|+++++.++|..|.+|++....++||+++|.||..+..| +|++.++++.-+.
T Consensus       159 lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~ke~g~DFiVgSGHKsmAAs~PiGvl~~~eE~ae~  238 (382)
T COG1103         159 LALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGKEIGADFIVGSGHKSMAASAPIGVLAMSEEWAEI  238 (382)
T ss_pred             EEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeeccccccccccCCCEEEecCccchhccCCeeEEeehhHHHHH
Confidence            899999999999999999999999999999999999999999999999999999999999776655 9999999987654


Q ss_pred             CCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          290 MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       290 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      +-...........+           .-+.+ |.--+.++.+.+++-+..+  .-+-++...+.++|+.+++.++-|+
T Consensus       239 V~r~Sg~~~~~KEv-----------ellGC-T~rGapivTlmASfP~V~e--RVkrWdeEv~kaR~fv~elEkigg~  301 (382)
T COG1103         239 VLRRSGRAFPKKEV-----------ELLGC-TVRGAPIVTLMASFPHVVE--RVKRWDEEVEKARWFVAELEKIGGV  301 (382)
T ss_pred             HHhhccccccccee-----------eeecc-cccCchHHHHHhcCHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            32111000000000           01111 2223345556666665554  2233455667888999999888654

>PLN02590 probable tyrosine decarboxylase

Probab=99.87  E-value=5.7e-20  Score=178.22  Aligned_cols=296  Identities=15%  Similarity=0.085  Sum_probs=201.0

Q ss_pred             CCCCcccccccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCC---
Q 017640           53 PDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDS---  129 (368)
Q Consensus        53 ~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~---  129 (368)
                      ...+......+  |+  |+++-..+..+..+...+....  +  |.....+..++...++...+.+++++++|.+..   
T Consensus       120 ~i~p~~~~~~h--P~--f~a~~~~~~~~~~~lgd~l~sa--~--n~~~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~  191 (539)
T PLN02590        120 KIMPGITHWQS--PS--YFAYYASSTSVAGFLGEMLNAG--L--SVVGFTWLTSPAATELEIIVLDWLAKLLQLPDHFLS  191 (539)
T ss_pred             HHhccCCcCCC--CC--eeEeccCCCcHHHHHHHHHHHh--c--ccccCCcccCchhHHHHHHHHHHHHHHhCCCccccc
Confidence            34555544433  33  5555444444554444332221  2  223345566777889999999999999999853   


Q ss_pred             ---CcEEEeCCHHHHHHHHHHHccCCCC-------CCCCEEEEcCCCCcccHHHHHHHHHHcCC---EEEEEeCCC--CC
Q 017640          130 ---GEIVFTKNATEAINLVAYSWGLSNL-------KSGDEVILTVAEHHSAIVPWQLVAQKTGA---NLKFLNLND--DE  194 (368)
Q Consensus       130 ---~~v~~t~g~t~a~~~~~~~~~~~~~-------~~gd~vl~~~~~~~s~~~~~~~~~~~~g~---~v~~v~~~~--~~  194 (368)
                         ...+||+|+|+|+..++.+.+....       .+.-.|++++..|+|    +.+.+...|+   +++.||++.  ++
T Consensus       192 ~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~S----v~KAa~ilGlg~~~vr~Vp~d~~~~~  267 (539)
T PLN02590        192 TGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSS----FRKACLIGGIHEENIRLLKTDSSTNY  267 (539)
T ss_pred             CCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHH----HHHHHHHcCCCcccEEEEeCCCCCCC
Confidence               3578999999999988876532111       122256667877887    4566666677   589999883  57


Q ss_pred             CCCHHHHHHhccc------CceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCccccc-C-----CCCCcc
Q 017640          195 SPDLDKLKEMLSR------KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD-V-----QGLDAD  262 (368)
Q Consensus       195 ~~d~~~l~~~l~~------~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~-~-----~~~~~d  262 (368)
                      .+|+++|+++|.+      .+-+|+.+..++.||.+.|+++|+++|++||+|++||+|++....... .     .-...|
T Consensus       268 ~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~AD  347 (539)
T PLN02590        268 GMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENAD  347 (539)
T ss_pred             cCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCccCC
Confidence            9999999999965      357899999999999999999999999999999999999996553221 1     112479


Q ss_pred             EEEecCcCc-CCCCcceEEEEccc--ccccCC---CcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 017640          263 FLVASSHKM-CGPTGIGFLFGKSD--LLSAMP---PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY  336 (368)
Q Consensus       263 ~~~~s~~K~-~g~~G~G~l~~~~~--li~~l~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~  336 (368)
                      .++.++||+ +.|.++|++++++.  +.+.+.   +++...........+     ......+.+.+  ...+.+..+++.
T Consensus       348 Sit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d-----~~d~~i~lsRr--~raLklW~~lr~  420 (539)
T PLN02590        348 SFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVN-----YKDWQISLSRR--FRSLKLWMVLRL  420 (539)
T ss_pred             EEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCHHHhCCcccccccCCC-----ccccCCCCCCc--hHHHHHHHHHHH
Confidence            999999995 55888999999974  222221   111100000000001     11122233222  235677788888


Q ss_pred             HHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          337 LSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       337 ~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      +-..|+.++.++..++++++.+.|++.++++
T Consensus       421 ~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fe  451 (539)
T PLN02590        421 YGSENLRNFIRDHVNLAKHFEDYVAQDPSFE  451 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence            8888999999999999999999999987765

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.86  E-value=2.5e-20  Score=176.83  Aligned_cols=265  Identities=15%  Similarity=0.139  Sum_probs=189.2

Q ss_pred             CeEEeccCCCCCCcHHHHHHHHHHHHHhh--ccCCCCcchhhHH-HHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHH
Q 017640           67 KLVYLDNAATSQKPIAVLKALQNYYEAYN--SNVHRGIHFLSAK-ATDEYELARKKVAAFINASDSGEIVFTKNATEAIN  143 (368)
Q Consensus        67 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~  143 (368)
                      ..+.|=.+. ..+++.+.+++...+..-+  +.|.. .++.+.. ..+......++..++||++.. +|-.- |++.|+.
T Consensus        50 ~~l~LiasE-N~~s~~v~~a~~s~l~nkyaeg~pg~-ryy~g~~~~d~ie~l~~~ra~~lf~a~~a-nvqp~-Sg~~An~  125 (493)
T PRK13580         50 SSLKLIASE-NYSSLAVQLAMGNLLTDKYAEGTPGH-RFYAGCQNVDTVEWEAAEHAKELFGAEHA-YVQPH-SGADANL  125 (493)
T ss_pred             cCceEeccc-ccCCHHHHHHhcccccccCcCCCCCc-cccCCCchHHHHHHHHHHHHHHHhCCCcc-cccCC-CcHHHHH
Confidence            445555444 4578888888876666422  22322 2233333 445566688899999999854 55444 4567999


Q ss_pred             HHHHHccCCCCCC-------------------------------CCEEEEcCCCCcccHHHHHHHHHHcC--CEEEEEeC
Q 017640          144 LVAYSWGLSNLKS-------------------------------GDEVILTVAEHHSAIVPWQLVAQKTG--ANLKFLNL  190 (368)
Q Consensus       144 ~~~~~~~~~~~~~-------------------------------gd~vl~~~~~~~s~~~~~~~~~~~~g--~~v~~v~~  190 (368)
                      .++.++    ++|                               ||+|+..+..+.+....- ......|  .+++..++
T Consensus       126 ~v~~al----l~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg-~~~n~~~~~~~~~~y~v  200 (493)
T PRK13580        126 VAFWAI----LAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHG-FRPNISGKMFHQRSYGV  200 (493)
T ss_pred             HHHHHH----hcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecC-cccchhhheeeeEeccc
Confidence            999988    554                               799998876664432111 0111112  34555666


Q ss_pred             C-CCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCC------CCCccE
Q 017640          191 N-DDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQ------GLDADF  263 (368)
Q Consensus       191 ~-~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~------~~~~d~  263 (368)
                      + +++.+|.+++++.+.++++.|++++.+|. |...|+++|.++|+++|+++++|++|++|.+..+..      ..++|+
T Consensus       201 d~~~g~iD~d~l~~~~~~~~plvii~g~S~~-~~~~dl~~i~eia~~~gA~L~VD~AH~~Gligg~~~~~~~~~~~~~D~  279 (493)
T PRK13580        201 DPDTGLLDYDEIAALAREFKPLILVAGYSAY-PRRVNFAKLREIADEVGAVLMVDMAHFAGLVAGKVFTGDEDPVPHADI  279 (493)
T ss_pred             CcccCccCHHHHHHHHhhcCCEEEEeCcccc-CCCcCHHHHHHHHHHcCCEEEEECchhhceeccccchhhcCCCCCCcE
Confidence            6 45899999999999999999999999998 557899999999999999999999999988764431      136899


Q ss_pred             EEecCcCcC-CCCcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCH
Q 017640          264 LVASSHKMC-GPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGM  342 (368)
Q Consensus       264 ~~~s~~K~~-g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~  342 (368)
                      +++|+||++ ||.| |++++++++++.+....                     .+-.|++..+.+++...++..+.+...
T Consensus       280 vtgT~hKaL~GP~G-G~I~~~~~l~~~L~~a~---------------------P~i~gg~l~p~iAA~avAl~e~~~~ef  337 (493)
T PRK13580        280 VTTTTHKTLRGPRG-GLVLAKKEYADAVDKGC---------------------PLVLGGPLPHVMAAKAVALAEARTPEF  337 (493)
T ss_pred             EEeCChhhccCCCe-EEEEecHHHHHHHhhCC---------------------CcccCCCccHHHHHHHHHHHHHhCccH
Confidence            999999965 7886 99999998887763111                     122346666688888888887765555


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh
Q 017640          343 QKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       343 ~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +..++++.++++++.+.|.+.
T Consensus       338 ~~y~~~l~~Na~~La~~L~~~  358 (493)
T PRK13580        338 QKYAQQVVDNARALAEGFLKR  358 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence            678899999999999999875

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.86  E-value=7.5e-20  Score=173.41  Aligned_cols=260  Identities=16%  Similarity=0.113  Sum_probs=188.0

Q ss_pred             CeEEeccCCCC--CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHH
Q 017640           67 KLVYLDNAATS--QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL  144 (368)
Q Consensus        67 ~~i~l~~~~~~--~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~  144 (368)
                      .+++|..+.+-  ...+.++++..+.++++......+  ..-.+.....+++++.||+++|.+   ..++.+++..|+..
T Consensus       103 ~~l~FsSndYLGL~~~p~v~~a~~~ai~~yG~g~~gS--rl~~G~~~~h~~LE~~LA~f~g~e---~all~sSGy~AN~~  177 (476)
T PLN02955        103 KLLLFSGNDYLGLSSHPTISNAAANAAKEYGMGPKGS--ALICGYTTYHRLLESSLADLKKKE---DCLVCPTGFAANMA  177 (476)
T ss_pred             eEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCCc--CccccChHHHHHHHHHHHHHHCCC---cEEEECChHHHHHH
Confidence            45666665543  468889999999999875443322  222334667789999999999987   44666667788888


Q ss_pred             HHHHccC----------CCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc---CceE
Q 017640          145 VAYSWGL----------SNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR---KTKL  211 (368)
Q Consensus       145 ~~~~~~~----------~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~---~~~~  211 (368)
                      ++.++.-          ....+++.|++....|.|.++..+...+..+++++.++.+     |+++|+++++.   +.++
T Consensus       178 ~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~HN-----D~~~Le~~L~~~~~~~~~  252 (476)
T PLN02955        178 AMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHC-----DMYHLNSLLSSCKMKRKV  252 (476)
T ss_pred             HHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCCC-----CHHHHHHHHHhCCCCceE
Confidence            8877510          0024667888999999998776554322225788888887     99999988853   4578


Q ss_pred             EEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccc---------cCCCCCccEEEecCcCcCCCCcceEEEE
Q 017640          212 VVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVV---------DVQGLDADFLVASSHKMCGPTGIGFLFG  282 (368)
Q Consensus       212 v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~---------~~~~~~~d~~~~s~~K~~g~~G~G~l~~  282 (368)
                      |+++...++.|.+.|+++|.++|++||+++++|++|+.|..-.         .+. .+.|++++|++|.+|..| |++++
T Consensus       253 Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~-~di~ii~~TLsKA~G~~G-Gfi~g  330 (476)
T PLN02955        253 VVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCE-ADVDLCVGTLSKAAGCHG-GFIAC  330 (476)
T ss_pred             EEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCC-CCCcEEEEeCccchhccC-ceeec
Confidence            9999999999999999999999999999999999999765421         122 368899999999999886 99999


Q ss_pred             cccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 017640          283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIV  359 (368)
Q Consensus       283 ~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~  359 (368)
                      ++++++.++..-.+                  ..| ++..+....++..++++.+...  +..++++.++.+++.+.
T Consensus       331 s~~~~~~l~~~~~~------------------~if-Stalpp~~aaa~laal~l~~~~--~~~r~~L~~n~~~fr~~  386 (476)
T PLN02955        331 SKKWKQLIQSRGRS------------------FIF-STAIPVPMAAAAYAAVVVARKE--KWRRKAIWERVKEFKAL  386 (476)
T ss_pred             HHHHHHHHHHhCCC------------------Cee-cccccHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHh
Confidence            99887766633211                  122 2245555666777888877652  44667777777777763

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.86  E-value=4.7e-20  Score=176.20  Aligned_cols=265  Identities=15%  Similarity=0.170  Sum_probs=174.9

Q ss_pred             CeEEeccCCCCCCcHHHHHHHHHHH-HHhhccCCCCcchhhHHHHHHHHHHHH----HHHHHcCCCCCCcEEEeCCHHHH
Q 017640           67 KLVYLDNAATSQKPIAVLKALQNYY-EAYNSNVHRGIHFLSAKATDEYELARK----KVAAFINASDSGEIVFTKNATEA  141 (368)
Q Consensus        67 ~~i~l~~~~~~~~~~~v~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~----~la~~~~~~~~~~v~~t~g~t~a  141 (368)
                      +.++|-.+. ..++|.+++++...+ ..+......+....|.   +..+++++    .+++++|.+.  .+++++|++.|
T Consensus        29 ~~~~l~~se-n~~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~---~~~~~lE~~~~~~la~l~g~~~--alv~~~SG~~A  102 (416)
T PRK13034         29 DHLELIASE-NFTSPAVMEAQGSVLTNKYAEGYPGKRYYGGC---EFVDEVEALAIERAKQLFGCDY--ANVQPHSGSQA  102 (416)
T ss_pred             cCeeecccc-cCCCHHHHHHhcchhhcCCCCCCCCCcccCCC---hHHHHHHHHHHHHHHHHhCCCc--eEEecCCcHHH
Confidence            334444433 446999999998885 5553322222222232   33444554    9999999872  44667888999


Q ss_pred             HHHHHHHccCCCCCCCCEEEEcCCCCcccHH-HHHHHHHHcCCEE--EEEeCC-CCCCCCHHHHHHhccc-CceEEEEcc
Q 017640          142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIV-PWQLVAQKTGANL--KFLNLN-DDESPDLDKLKEMLSR-KTKLVVIHH  216 (368)
Q Consensus       142 ~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~-~~~~~~~~~g~~v--~~v~~~-~~~~~d~~~l~~~l~~-~~~~v~~~~  216 (368)
                      +..++.++    +++||+|++....|.+... ....  ...+...  ..++++ .++.+|++++++.+.. ++++|+++.
T Consensus       103 ~~~~l~al----~~~GD~Vl~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~klVi~~~  176 (416)
T PRK13034        103 NGAVYLAL----LKPGDTILGMSLSHGGHLTHGAKV--SLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEHKPKLIIAGF  176 (416)
T ss_pred             HHHHHHHh----cCCCCEEEEcCccceeeeecCCcc--eeccceeeeEEcccccccCCcCHHHHHHHHhhcCCeEEEECC
Confidence            99999998    8999999999999987421 1110  0012222  344443 2467899999998854 678888765


Q ss_pred             cccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccC---CCCCccEEEecCcCcC-CCCcceEEEEccccc-ccCC
Q 017640          217 ISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDV---QGLDADFLVASSHKMC-GPTGIGFLFGKSDLL-SAMP  291 (368)
Q Consensus       217 ~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~---~~~~~d~~~~s~~K~~-g~~G~G~l~~~~~li-~~l~  291 (368)
                      .  .+|...|+++|.++|++||+++++|++|++|......   ...++|++++|+||++ |+.| |+++.+++.+ +.++
T Consensus       177 ~--~~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~~~~Di~~~s~~K~l~g~~G-G~v~~~~~~~~~~~~  253 (416)
T PRK13034        177 S--AYPRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKTLRGPRG-GMILTNDEEIAKKIN  253 (416)
T ss_pred             C--ccccccCHHHHHHHHHHcCCEEEEeCcccccCcccCCCCCCCCCceEEEEeCcccCCCCCC-eEEEECcHHHHHHHH
Confidence            4  3678889999999999999999999999988763322   1125899999999987 5665 7776665433 3344


Q ss_pred             CcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       292 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      +....+                   . .++++.+.++++..++......+....++++.++++++.+.|.+. |++
T Consensus       254 ~~~~~~-------------------~-~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~-G~~  308 (416)
T PRK13034        254 SAVFPG-------------------L-QGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKER-GYD  308 (416)
T ss_pred             hhcCCc-------------------c-cCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHc-CCE
Confidence            322110                   0 123445555555555554443344567899999999999999876 543

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=99.86  E-value=1.4e-20  Score=176.24  Aligned_cols=215  Identities=16%  Similarity=0.118  Sum_probs=155.0

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      .+...+++++++++.|.+   ++++++|+++|+.+++. +    +++||+|+++.+.|.+....+.......+.++.+  
T Consensus        53 ~p~~~~le~~lA~leg~~---~~v~~~sG~aAi~~~l~-~----l~~GD~VI~~~~~yg~~~~~~~~~~~~~~~~~~~--  122 (364)
T PRK07269         53 NPTRAKLEETLAAIESAD---YALATSSGMSAIVLAFS-V----FPVGSKVVAVRDLYGGSFRWFNQQEKEGRFHFTY--  122 (364)
T ss_pred             CccHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHH-H----hCCCCEEEEecCCcCchHHHHHHHHhcCcEEEEe--
Confidence            445668999999999865   78999999999999884 5    6899999999999987764444433322322222  


Q ss_pred             CCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCc
Q 017640          190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH  269 (368)
Q Consensus       190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~  269 (368)
                           ..|++++++++++++++|++++|+||||.+.++++|+++|+++|+++++|++++.+...-. -..+.|+++.|++
T Consensus       123 -----~~d~~~l~~~i~~~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~~~p-l~~gaDivv~S~t  196 (364)
T PRK07269        123 -----ANTEEELIAAIEEDTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQRP-IELGADIVLHSAT  196 (364)
T ss_pred             -----cCCHHHHHHhcCcCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCc-hhhCCcEEEecCc
Confidence                 2389999999999999999999999999999999999999999999999999876543222 2458999999999


Q ss_pred             CcCCCCc---ceEEEEc-ccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 017640          270 KMCGPTG---IGFLFGK-SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI  345 (368)
Q Consensus       270 K~~g~~G---~G~l~~~-~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i  345 (368)
                      |+++++|   .|+++++ +++.++++....                     ......+..   .+..++.-++.  ++..
T Consensus       197 K~l~g~~d~~gG~v~~~~~~l~~~~~~~~~---------------------~~G~~~s~~---~a~l~~~~L~t--L~~r  250 (364)
T PRK07269        197 KYLSGHNDVLAGVVVTNDLELYEKLFYNLN---------------------TTGAVLSPF---DSYLLMRGLKT--LSLR  250 (364)
T ss_pred             eeccCCCcccceEEEeCcHHHHHHHHHHHH---------------------HhCCCCCHH---HHHHHHcCCCc--HHHH
Confidence            9887655   6888875 455554442111                     000111221   12222222222  5666


Q ss_pred             HHHHHHHHHHHHHHHHhhcCC
Q 017640          346 HAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       346 ~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      .++..+++..+.++|++.++.
T Consensus       251 ~~~~~~na~~~a~~L~~~p~v  271 (364)
T PRK07269        251 MERSTANAQEVVAFLKKSPAV  271 (364)
T ss_pred             HHHHHHHHHHHHHHHHhCCCc
Confidence            677788888889999887753

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.86  E-value=9.2e-20  Score=170.98  Aligned_cols=283  Identities=19%  Similarity=0.177  Sum_probs=190.3

Q ss_pred             EeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCC------CcEEEeCCHHHHHH
Q 017640           70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDS------GEIVFTKNATEAIN  143 (368)
Q Consensus        70 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~------~~v~~t~g~t~a~~  143 (368)
                      |+++-..++.+..+...+....  ++.|.  .....++...++..++.+++++++|.+..      ...++|+|+|+++.
T Consensus        42 ~~~~~~~~~~~~~i~~~~l~~~--~n~n~--~~~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl  117 (373)
T PF00282_consen   42 FFGFVPGGPSPASILADLLASA--LNQNG--FTWEASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANL  117 (373)
T ss_dssp             BESSSHT--CHHHHHHHHHHHH--HT-BT--TSTTTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHH
T ss_pred             HhhhccCCccHHHHHHHHHHhh--hcccc--cccccccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHH
Confidence            5555555555655555443322  22332  34455677888999999999999999821      25799999999999


Q ss_pred             HHHHHccCCCC--------C-CCC-EEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc---C--
Q 017640          144 LVAYSWGLSNL--------K-SGD-EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR---K--  208 (368)
Q Consensus       144 ~~~~~~~~~~~--------~-~gd-~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~---~--  208 (368)
                      .++.+.+....        . .++ .|++++..|++    +.+.+...|..++.||+++++.+|+++|+++|.+   +  
T Consensus       118 ~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S----~~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~  193 (373)
T PF00282_consen  118 YALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYS----IEKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGK  193 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-TH----HHHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTE
T ss_pred             HHHHHHHHHHhhhhhhcccccccccccccccccccH----HHHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccc
Confidence            98876532111        0 122 57777888888    5667778899999999999999999999998864   2  


Q ss_pred             -ceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCccc------ccCCCCCccEEEecCcCcCC-CCcceEE
Q 017640          209 -TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMV------VDVQGLDADFLVASSHKMCG-PTGIGFL  280 (368)
Q Consensus       209 -~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~------~~~~~~~~d~~~~s~~K~~g-~~G~G~l  280 (368)
                       +-+|+.+..++.+|.+.|+++|.++|+++++++++|++++....-      +...-...|.++.++||+++ |.++|++
T Consensus       194 ~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~  273 (373)
T PF00282_consen  194 TPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGCGVL  273 (373)
T ss_dssp             EEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-EEE
T ss_pred             cceeeeccCCCcccccccCHHHHhhhccccceeeeecccccccccccccccccccccccccccccchhhhhcCCccceeE
Confidence             447889999999999999999999999999999999999853331      11122358999999999655 7789999


Q ss_pred             EEcccc-ccc-CC---CcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 017640          281 FGKSDL-LSA-MP---PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIIC  355 (368)
Q Consensus       281 ~~~~~l-i~~-l~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~  355 (368)
                      ++|++. +.. +.   ++........     ...+......+ .++. -...+.+..+++.+-..|+.++.++..+++++
T Consensus       274 l~r~~~~l~~~~~~~~~Yl~~~~~~~-----~~~~~~~~~tl-~~SR-~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~  346 (373)
T PF00282_consen  274 LVRDKSDLRDAFSINADYLGNDDRES-----DESYDYGDYTL-QGSR-RFRALKLWATLKSLGREGYRERIRRCIELARY  346 (373)
T ss_dssp             EESSGGGHHGGGEEEETCTT-S-SSS------GGGCEEEGSS-SSSG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeecccchHHHhccChhhhccccccc-----ccccccccccc-cccc-cchHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            998863 221 10   1111000000     00000001112 2344 45567778888888888999999999999999


Q ss_pred             HHHHHHhhcCCC
Q 017640          356 SIIVIQERHNTT  367 (368)
Q Consensus       356 l~~~l~~~~g~t  367 (368)
                      +.++|++.++++
T Consensus       347 l~~~l~~~~~~e  358 (373)
T PF00282_consen  347 LADRLRKDPRFE  358 (373)
T ss_dssp             HHHHHHTSTTEE
T ss_pred             HHHHHHhCCCEE
Confidence            999999987653

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=99.86  E-value=7e-20  Score=170.87  Aligned_cols=245  Identities=15%  Similarity=0.153  Sum_probs=186.1

Q ss_pred             chhhHHHHHHHHHHHHHHHHHcCCCCCCcE-EEeCCHHHHHHHHHHHccCCCC-CCCCEEEEcCCCCcccHHHHH-HHHH
Q 017640          103 HFLSAKATDEYELARKKVAAFINASDSGEI-VFTKNATEAINLVAYSWGLSNL-KSGDEVILTVAEHHSAIVPWQ-LVAQ  179 (368)
Q Consensus       103 ~~~~~~~~~~~~~~r~~la~~~~~~~~~~v-~~t~g~t~a~~~~~~~~~~~~~-~~gd~vl~~~~~~~s~~~~~~-~~~~  179 (368)
                      ++.+..+.+.++++++.+.++++.+.++++ +++.|+|.+++.++..+    + ++|+.+++..  .++  .-|. .+++
T Consensus        31 ~HRs~~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl----~~~~g~~vLv~g--~FG--~r~~~eia~  102 (374)
T TIGR01365        31 SHRSKLGKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSM----LGCRGVDVLAWE--SFG--KGWVTDVTK  102 (374)
T ss_pred             CcCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHc----CCCCCCeEEEEC--HHH--HHHHHHHHH
Confidence            355677899999999999999998644445 56899999999999998    6 5888888753  333  3456 8889


Q ss_pred             HcCC-EEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCC
Q 017640          180 KTGA-NLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQG  258 (368)
Q Consensus       180 ~~g~-~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~  258 (368)
                      ..|+ ++..+..+.+..+|+++++.  .   +.|+++|..+.||+..|++++...+  +++++++|++.++|..+++++.
T Consensus       103 ~~g~~~v~~l~~~~g~~~~~~~ve~--~---~~v~~vhnETSTGv~npv~~i~~~~--~~~lliVDavSs~g~~~l~~d~  175 (374)
T TIGR01365       103 QLKLPDVRVLEAEYGKLPDLKKVDF--K---NDVVFTWNGTTSGVRVPNGDFIPAD--REGLTICDATSAAFAQDLDYHK  175 (374)
T ss_pred             hcCCCCcEEEcCCCCCCCCHHHcCC--C---CCEEEecCCCchheecccccccccc--CCCcEEEEccchhcCCCCChhH
Confidence            9999 58888877777889999873  1   2367999999999999997665322  5899999999999999998884


Q ss_pred             CCccEEEecCcCcC-CCCcceEEEEcccccccCCCcccCCcceeecccCCC---CCC-CCCCCCCCCCCCHHHHHHHHHH
Q 017640          259 LDADFLVASSHKMC-GPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHS---TFA-DPPSRFEAGTPAIGEAIGLGAA  333 (368)
Q Consensus       259 ~~~d~~~~s~~K~~-g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~---~~~-~~~~~~~~gt~~~~~~~a~~~a  333 (368)
                        .|++++|.+|.+ +|+|+++++++++.+++.......+.. .. ..+..   .+. .........||++..++++..+
T Consensus       176 --iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~~~y~~~-~~-~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~  251 (374)
T TIGR01365       176 --LDVVTFSWQKVLGGEGAHGMLILSPRAVARLESYTPAWPL-PK-IFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDA  251 (374)
T ss_pred             --CcEEEEechhccCCCCceEEEEECHHHHHHHhhcCCCCCC-hh-hhccccccchhhhhhcCCCCCChHHHHHHHHHHH
Confidence              999999999965 588899999999998775532110000 00 01110   000 0011234558999999999999


Q ss_pred             HHHHHHh-CHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          334 IDYLSTI-GMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       334 l~~~~~~-g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      ++++.++ |++.+.+|.+++++.+++.+++...+
T Consensus       252 l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l  285 (374)
T TIGR01365       252 LKWAESIGGLKPLIARADDNLAVLEAFVAKNNWI  285 (374)
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence            9988886 89999999999999999999986324

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.86  E-value=7.3e-20  Score=173.71  Aligned_cols=163  Identities=19%  Similarity=0.252  Sum_probs=138.8

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      .+..+.+++.++++.|..   ..+.++|++.|+.+++.++    +++||+|+++.+.|.++...+.......|++++++.
T Consensus        60 nPtv~~lE~~la~leg~~---~av~~~SG~aAi~~al~al----l~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd  132 (432)
T PRK06702         60 NPTLAAFEQKLAELEGGV---GAVATASGQAAIMLAVLNI----CSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFN  132 (432)
T ss_pred             CcHHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHh----cCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEEC
Confidence            345678999999999986   4578999999999999988    899999999999999888777776788899999996


Q ss_pred             CCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCc
Q 017640          190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH  269 (368)
Q Consensus       190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~  269 (368)
                      .    .+|+++++++|+++|++|++++++||++.+.|+++|+++|++||+++++|++++.+.. ...-..+.|+++.|++
T Consensus       133 ~----~~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~tP~~-~~pl~~GADIvv~S~T  207 (432)
T PRK06702        133 P----NLTADEIVALANDKTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATPYL-CQAFEHGANIIVHSTT  207 (432)
T ss_pred             C----CCCHHHHHHhCCcCCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCCCchhh-CChhhcCCCEEEEccc
Confidence            4    3589999999999999999999999999999999999999999999999999975433 2223568999999999


Q ss_pred             CcCCCCc---ceEEEEcc
Q 017640          270 KMCGPTG---IGFLFGKS  284 (368)
Q Consensus       270 K~~g~~G---~G~l~~~~  284 (368)
                      |++|+.+   .|+++...
T Consensus       208 Ky~~Ghsd~l~G~v~~~~  225 (432)
T PRK06702        208 KYIDGHASSLGGIVIDGG  225 (432)
T ss_pred             cccCCCcceeceEEEeCC
Confidence            9887665   55555443

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.85  E-value=3.5e-19  Score=180.00  Aligned_cols=280  Identities=14%  Similarity=0.101  Sum_probs=193.5

Q ss_pred             EEeccCCCCCCcHHHHHHHHHHHHHhhc-cCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHH
Q 017640           69 VYLDNAATSQKPIAVLKALQNYYEAYNS-NVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAY  147 (368)
Q Consensus        69 i~l~~~~~~~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~  147 (368)
                      .++..+++....+...+.+.-....+.. .|+ .....+.+..+.+.++++++++++|.+.  .-+..++++.|....+.
T Consensus       488 ~fi~lGsctmk~na~v~~l~~s~~ef~t~hPy-qPe~~sqG~lq~i~elq~~l~eltGmd~--~Sl~p~aGA~gE~agL~  564 (939)
T TIGR00461       488 SMIPLGSCTMKLNATAEMMPITWPEFSNIHPF-QPSNQVEGYQELIAQLEKWLCSITGFDA--ISLQPNSGAQGEYAGLR  564 (939)
T ss_pred             cCCCCccCCCccCHHHHHHHhcchhhcCcCCC-CchHHhHHHHHHHHHHHHHHHHHHCCCC--cccCCchHHHHHHHHHH
Confidence            4666666776666666665333333322 122 1222456688999999999999999983  23444555655554554


Q ss_pred             HccCCCC----CCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc---CceEEEEcccccc
Q 017640          148 SWGLSNL----KSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR---KTKLVVIHHISNM  220 (368)
Q Consensus       148 ~~~~~~~----~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~---~~~~v~~~~~~n~  220 (368)
                      +.+.++-    ..+++|+++...|.++...    ++..|.+++.|+.+++|.+|+++|++++++   ++++|++++++| 
T Consensus       565 aiR~y~~~rge~~R~~vlip~saHgtnPas----a~~~G~~Vv~V~~d~~G~iDle~L~~~i~~~~~~taaV~iT~pst-  639 (939)
T TIGR00461       565 VIRSYHESRGENHRNICLIPVSAHGTNPAS----AAMAGMQVVPVNCDQDGNIDLVDLKNKAEQHGDELAAVMVTYPST-  639 (939)
T ss_pred             HHHHHHHhcCCCCCCEEEEEccccCcCHHH----HHHCCCEEEEeccCCCCCcCHHHHHHHHhhcCCceEEEEEEeCCc-
Confidence            4421111    2356899999999887543    556699999999999999999999999974   889999999999 


Q ss_pred             cccccC-HHHHHHHHHhcCCEEEEecCCcCCcccc-cCCCCCccEEEecCcC-cC-----CCCcceEEEEcccccccCCC
Q 017640          221 LASILP-IEEIVHWSHDVGAKVLVDACQSVPHMVV-DVQGLDADFLVASSHK-MC-----GPTGIGFLFGKSDLLSAMPP  292 (368)
Q Consensus       221 tG~~~~-l~~i~~l~~~~g~~li~D~a~~~~~~~~-~~~~~~~d~~~~s~~K-~~-----g~~G~G~l~~~~~li~~l~~  292 (368)
                      +|.+.| +++|+++||++|.++++|+++..+...+ +...+++|++++|.|| ++     |++|+|++++++++...+. 
T Consensus       640 ~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lP-  718 (939)
T TIGR00461       640 HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVGLTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLP-  718 (939)
T ss_pred             CceecccHHHHHHHHHHcCCEEEEEecChhhCCCCCCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcC-
Confidence            788887 9999999999999999999998755544 4467899999999999 55     5666899999987554443 


Q ss_pred             cccCCcceeecccCCCCCCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          293 FLGGGEMISDVFLDHSTFADPPSRFE--AGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       293 ~~~g~~~~~~~~~~~~~~~~~~~~~~--~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                         |+...........   +.+-+..  ..+-+..-.......+..+-..|+.++.+....+++|+.++|.+.
T Consensus       719 ---g~~v~~t~d~~gr---eq~Iga~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~~  785 (939)
T TIGR00461       719 ---KHDVVSMITGIGG---SKSIGSVSAAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKDH  785 (939)
T ss_pred             ---CCcccccccCCCC---ccccccccccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence               3321110000000   0011111  123334444555666667777789999999999999999999874

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.85  E-value=4.7e-19  Score=165.04  Aligned_cols=228  Identities=18%  Similarity=0.207  Sum_probs=162.2

Q ss_pred             CcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCC
Q 017640           79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD  158 (368)
Q Consensus        79 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd  158 (368)
                      ..+.+.++..+.+..+.     |       ..+..+++++.+|+++|.+++ ++++++|+++++..++.++    +++||
T Consensus        34 ~~~~~~~~~~~~~~~~~-----g-------~~~~~~~Le~~lA~~~g~~~e-~ilv~~gg~~a~~~~~~al----~~~gd   96 (346)
T TIGR03576        34 GGFKIDEEDLELLETYV-----G-------PAIFEEKVQELGREHLGGPEE-KILVFNRTSSAILATILAL----EPPGR   96 (346)
T ss_pred             CChhHHHHHHHHHHHhc-----C-------CHHHHHHHHHHHHHHcCCCcc-eEEEECCHHHHHHHHHHHh----CCCCC
Confidence            45667777777777652     1       146777999999999999765 8999999999999999998    89999


Q ss_pred             EEEEcC---CCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEccccccccccc---CHHHHHH
Q 017640          159 EVILTV---AEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASIL---PIEEIVH  232 (368)
Q Consensus       159 ~vl~~~---~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~---~l~~i~~  232 (368)
                      +|++..   |.|.+    +...++..|+++..+  .     |++.++.  .+++++|+++. .+++|.++   ++++|++
T Consensus        97 ~Vli~~~d~p~~~s----~~~~~~l~ga~~~~~--~-----~l~~l~~--~~~~~lIiitg-~s~~G~v~~~~~L~~i~~  162 (346)
T TIGR03576        97 KVVHYLPEKPAHPS----IPRSCKLAGAEYFES--D-----ELSELKK--IDGTSLVVITG-STMDLKVVSEEDLKRVIK  162 (346)
T ss_pred             EEEECCCCCCCchh----HHHHHHHcCCEEecc--C-----CHHHHhh--CcCceEEEEEC-CCCCCcccCHHHHHHHHH
Confidence            999753   55555    444556678876432  2     5555543  24678887765 68999995   5889999


Q ss_pred             HHHhcCCEEEEecCCcCCcccc-c---CCCCCccEEEecCcCcC-CCCcceEEEEcccccccCCCcccCCcceeecccCC
Q 017640          233 WSHDVGAKVLVDACQSVPHMVV-D---VQGLDADFLVASSHKMC-GPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDH  307 (368)
Q Consensus       233 l~~~~g~~li~D~a~~~~~~~~-~---~~~~~~d~~~~s~~K~~-g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~  307 (368)
                      +|++||+++++|++|+.+.... +   ....+.|++++|+||.+ |+. +||+++++++++.++.....+.         
T Consensus       163 la~~~~~~livDEAy~~~~~~~~~~~~~~~~~~divv~s~SKalaG~r-~G~v~~~~~li~~l~~~~~~~~---------  232 (346)
T TIGR03576       163 QAKSKEAIVLVDDASGARVRRLYGQPPALDLGADLVVTSTDKLMDGPR-GGLLAGRKELVDKIKSVGEQFG---------  232 (346)
T ss_pred             HHHHcCCEEEEECCccccccccCCCCCHHHcCCcEEEeccchhccccc-eEEEEeCHHHHHHHHHhhcCcc---------
Confidence            9999999999999999764321 1   11235789999999965 454 6999999999887775432111         


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHh
Q 017640          308 STFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       308 ~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~  362 (368)
                               +   +.+.+.+.++..+|+...   .+.+++..++..+++.+.+.+
T Consensus       233 ---------~---s~~~~~~~aa~~aL~~~~---~~~~~~~l~~r~~~~~~~l~~  272 (346)
T TIGR03576       233 ---------L---EAQAPLLAAVVRALEEFE---LSRIRDAFKRKEEVYLRLFDK  272 (346)
T ss_pred             ---------c---CccHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHh
Confidence                     1   345556666777776432   345566666666666666653

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PRK07582 cystathionine gamma-lyase; Validated

Probab=99.84  E-value=8.6e-20  Score=171.59  Aligned_cols=211  Identities=17%  Similarity=0.180  Sum_probs=151.2

Q ss_pred             HHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeC
Q 017640          111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL  190 (368)
Q Consensus       111 ~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~  190 (368)
                      +...+++++++++.  . + +.++++++++|+..++.++    +++||+|++.++.|+.........++..|++++.++.
T Consensus        51 p~~~~Le~~lA~l~--~-~-~~v~~~sG~~Ai~~~l~al----l~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~  122 (366)
T PRK07582         51 PTWRALEAALGELE--G-A-EALVFPSGMAAITAVLRAL----LRPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPT  122 (366)
T ss_pred             ccHHHHHHHHHHHc--C-C-CEEEECCHHHHHHHHHHHh----cCCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECC
Confidence            44568999999999  2 2 5566677778999999888    8999999999999987765555455667999999987


Q ss_pred             CCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcC--CcccccCCCCCccEEEecC
Q 017640          191 NDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSV--PHMVVDVQGLDADFLVASS  268 (368)
Q Consensus       191 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~--~~~~~~~~~~~~d~~~~s~  268 (368)
                      ++++       + .+.+++++|++++++||+|.+.|+++|.++|+++|+++++|++|+.  +..+++   ++.|+++.|+
T Consensus       123 ~~~~-------~-~~~~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~~~~~~p~~---~g~Divv~S~  191 (366)
T PRK07582        123 AGMA-------E-AALAGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATPLGQRPLE---LGADLVVASD  191 (366)
T ss_pred             CChH-------H-HhccCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCCCccccCchh---cCCcEEEecc
Confidence            5321       1 2346789999999999999999999999999999999999999863  333443   4689999999


Q ss_pred             cCcC-CCCc--ceEEEEc-ccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHH
Q 017640          269 HKMC-GPTG--IGFLFGK-SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQK  344 (368)
Q Consensus       269 ~K~~-g~~G--~G~l~~~-~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~  344 (368)
                      +|++ |+.|  +|+++++ +++++.++.+...                     ...+++.....-+..++   +.  ++.
T Consensus       192 sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~---------------------~g~~~~~~~a~l~~r~l---~t--l~~  245 (366)
T PRK07582        192 TKALTGHSDLLLGYVAGRDPELMAAVERWRLL---------------------AGAIPGPFEAWLAHRSL---GT--LGL  245 (366)
T ss_pred             cccccCCCCeeEEEEEcCcHHHHHHHHHHHHH---------------------hCCCCCHHHHHHHHhcc---cc--HHH
Confidence            9976 4566  6988875 5665555433211                     11123322222222222   22  334


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCC
Q 017640          345 IHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       345 i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      ..++..+++..+.++|.+++..
T Consensus       246 R~~~~~~na~~la~~L~~~p~v  267 (366)
T PRK07582        246 RFARQCANALAVAELLAGHPAV  267 (366)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCc
Confidence            4466778888888888888764

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.84  E-value=3.2e-19  Score=171.16  Aligned_cols=253  Identities=13%  Similarity=0.112  Sum_probs=178.1

Q ss_pred             CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCC
Q 017640           76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLK  155 (368)
Q Consensus        76 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~  155 (368)
                      .+..++.+.+++.+.+......+..      ....+...++++.++++++.+. +.+++++|+++|+..++..+.  ...
T Consensus        50 lG~~~p~v~~a~~~~~~~~~~~~~~------~~~~~~~~~l~~~l~~~~~~~~-~~v~~~~sgsea~~~al~~~~--~~~  120 (413)
T cd00610          50 LGHNHPEVVEALKEQLAKLTHFSLG------FFYNEPAVELAELLLALTPEGL-DKVFFVNSGTEAVEAALKLAR--AYT  120 (413)
T ss_pred             cCCCCHHHHHHHHHHHHhCcCccCc------ccCCHHHHHHHHHHHHhCCCCC-CEEEEcCcHHHHHHHHHHHHH--HHc
Confidence            4467899999999998654222111      0124556789999999999654 499999999999999998762  146


Q ss_pred             CCCEEEEcCCCCcccHHHHHHHHHHc---------CCEEEEEeCCC------CCCCCHHHHHHhccc---CceEEEEccc
Q 017640          156 SGDEVILTVAEHHSAIVPWQLVAQKT---------GANLKFLNLND------DESPDLDKLKEMLSR---KTKLVVIHHI  217 (368)
Q Consensus       156 ~gd~vl~~~~~~~s~~~~~~~~~~~~---------g~~v~~v~~~~------~~~~d~~~l~~~l~~---~~~~v~~~~~  217 (368)
                      +++.|++.++.|++............         ..+++.+|.++      ++..|++.|++.+++   ++++|+++..
T Consensus       121 ~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~  200 (413)
T cd00610         121 GRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEPI  200 (413)
T ss_pred             CCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEEEEccc
Confidence            78999999999998765444332110         12356666552      233488999998876   5788899999


Q ss_pred             ccccccccC----HHHHHHHHHhcCCEEEEecCCcC-Ccc----cccCCCCCccEEEecCcCcCCC-CcceEEEEccccc
Q 017640          218 SNMLASILP----IEEIVHWSHDVGAKVLVDACQSV-PHM----VVDVQGLDADFLVASSHKMCGP-TGIGFLFGKSDLL  287 (368)
Q Consensus       218 ~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~~-~~~----~~~~~~~~~d~~~~s~~K~~g~-~G~G~l~~~~~li  287 (368)
                      ++++|.+.|    +++|.++|++||+++|+|++|+. +..    ..+.....+|++  +++|.+++ ..+|+++.+++++
T Consensus       201 ~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~~~d~~--t~sK~l~~g~~~g~~~~~~~~~  278 (413)
T cd00610         201 QGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIV--TLGKGLGGGLPLGAVLGREEIM  278 (413)
T ss_pred             cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhHhhcCCCCCeE--EEcccccCccccEEEEEcHHHH
Confidence            999999987    99999999999999999999873 111    112222346655  56697775 2289999999888


Q ss_pred             ccC--CCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          288 SAM--PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       288 ~~l--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +.+  .+...                     ....+.+...++++.++++.+++   +.+.++.+++.+++.+.+++.
T Consensus       279 ~~~~~~~~~~---------------------~~t~~~~~~~~~a~~a~l~~l~~---~~~~~~~~~~~~~l~~~l~~~  332 (413)
T cd00610         279 DAFPAGPGLH---------------------GGTFGGNPLACAAALAVLEVLEE---EGLLENAAELGEYLRERLREL  332 (413)
T ss_pred             HhhccCCCCC---------------------CCCCCcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHH
Confidence            775  11111                     11224566677788888888876   356677888888888877654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.84  E-value=5.1e-19  Score=167.28  Aligned_cols=256  Identities=16%  Similarity=0.150  Sum_probs=169.4

Q ss_pred             CcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCC
Q 017640           79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD  158 (368)
Q Consensus        79 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd  158 (368)
                      ..+.-.+++.+.+......          +..+..+++++.+++++|.+   ++++++|+++|+.+++.++   .+++||
T Consensus         9 ~~~~~~~~~~~~l~~~~~~----------g~~~~~~~~e~~la~~~g~~---~~v~~~sgt~al~~~l~~~---~~~~Gd   72 (375)
T PRK11706          9 VVGTELDYIQQAMSSGKLC----------GDGGFTRRCQQWLEQRFGSA---KVLLTPSCTAALEMAALLL---DIQPGD   72 (375)
T ss_pred             CCHHHHHHHHHHHHcCCcc----------CCCHHHHHHHHHHHHHhCCC---eEEEECCHHHHHHHHHHHh---CCCCCC
Confidence            3445566666665532111          01345567888899999885   7899999999999988766   378999


Q ss_pred             EEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC-CCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhc
Q 017640          159 EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDV  237 (368)
Q Consensus       159 ~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~  237 (368)
                      +|+++.++|+++...    +...|++++.++++++ +.+|++++++++++++++|++++   ++|...++++|.++|++|
T Consensus        73 ~Viv~~~t~~~~~~~----~~~~G~~~v~~d~d~~~~~~d~~~le~~i~~~tk~i~~~~---~~G~~~~~~~i~~la~~~  145 (375)
T PRK11706         73 EVIMPSYTFVSTANA----FVLRGAKIVFVDIRPDTMNIDETLIEAAITPKTRAIVPVH---YAGVACEMDTIMALAKKH  145 (375)
T ss_pred             EEEECCCCcHHHHHH----HHHcCCEEEEEecCCCcCCcCHHHHHHhcCCCCeEEEEeC---CCCCccCHHHHHHHHHHc
Confidence            999999988886543    4556999999999866 57899999999999999998765   599999999999999999


Q ss_pred             CCEEEEecCCcCCcccccCCCC--CccEEEecCc--CcCCCCcce-EEEEcccccccCCCcccCCcceeecccCC-CCCC
Q 017640          238 GAKVLVDACQSVPHMVVDVQGL--DADFLVASSH--KMCGPTGIG-FLFGKSDLLSAMPPFLGGGEMISDVFLDH-STFA  311 (368)
Q Consensus       238 g~~li~D~a~~~~~~~~~~~~~--~~d~~~~s~~--K~~g~~G~G-~l~~~~~li~~l~~~~~g~~~~~~~~~~~-~~~~  311 (368)
                      |+++|+|++|+.+.. .+-...  ..|+.++|+|  |.+++...| ++..++++.++++.....|......+... ..+ 
T Consensus       146 ~i~vIeD~a~a~g~~-~~~~~~g~~~~~~~~Sf~~~K~l~~g~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-  223 (375)
T PRK11706        146 NLFVVEDAAQGVMST-YKGRALGTIGHIGCFSFHETKNYTAGEGGALLINDPALIERAEIIREKGTNRSQFFRGQVDKY-  223 (375)
T ss_pred             CCEEEEECccccccc-cCCeeeecCcCEEEEeCCCCccccccCCeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcc-
Confidence            999999999998863 221111  2477788877  987753345 44445677766665443322111100000 000 


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhc
Q 017640          312 DPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERH  364 (368)
Q Consensus       312 ~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~  364 (368)
                         .....|+.....-+.++..+..++.  ++.+.++.+++.++..+.|.+..
T Consensus       224 ---~~~~~g~~~~~~~~~aa~~~~ql~~--l~~~~~~R~~~~~~~~~~L~~~~  271 (375)
T PRK11706        224 ---TWVDIGSSYLPSELQAAYLWAQLEA--ADRINQRRLALWQRYYDALAPLA  271 (375)
T ss_pred             ---eeeecccccCcCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCC
Confidence               0001122221111222223333333  56677777788888888887654

>PRK07505 hypothetical protein; Provisional

Probab=99.84  E-value=7.1e-19  Score=168.01  Aligned_cols=260  Identities=12%  Similarity=0.162  Sum_probs=169.3

Q ss_pred             CeEEeccCCCC----CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHH
Q 017640           67 KLVYLDNAATS----QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI  142 (368)
Q Consensus        67 ~~i~l~~~~~~----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~  142 (368)
                      +..|+|..+.+    ..++.+.+++.+++..+. +.+.+. .......+...++++.++++++.  . .++++ ++++|+
T Consensus        45 g~~~ld~~s~~~lgl~~~p~v~~A~~~~l~~~g-~~~~~~-~~~~~~~~~~~~l~~~la~~~~~--~-~~~~~-sG~~a~  118 (402)
T PRK07505         45 GHTFVNFVSCSYLGLDTHPAIIEGAVDALKRTG-SLHLSS-SRTRVRSQILKDLEEALSELFGA--S-VLTFT-SCSAAH  118 (402)
T ss_pred             CceEEEeecCCccCCCCCHHHHHHHHHHHHHhC-CCCCCc-cchhhhhHHHHHHHHHHHHHhCC--C-EEEEC-ChHHHH
Confidence            44566665433    459999999999998753 111111 11112466778999999999986  2 44555 556788


Q ss_pred             HHHHHHccCCCCCCCC-EEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEccccccc
Q 017640          143 NLVAYSWGLSNLKSGD-EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNML  221 (368)
Q Consensus       143 ~~~~~~~~~~~~~~gd-~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~t  221 (368)
                      ..++..+......+|+ .+++.+..+|+.........+ .+.+++.+|..     |++.++++++++++++++++++||+
T Consensus       119 ~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~-~~~~v~~~~~~-----d~~~l~~~~~~~~~~~vl~~p~~~~  192 (402)
T PRK07505        119 LGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICA-DETEVETIDHN-----DLDALEDICKTNKTVAYVADGVYSM  192 (402)
T ss_pred             HHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhh-cCCeEEEeCCC-----CHHHHHHHHhcCCCEEEEEeccccc
Confidence            8777654211123232 355555455443322222222 35678888865     8999999998778899999999999


Q ss_pred             ccccCHHHHHHHHHhcCCEEEEecCCcCCcc-------ccc-CC--CCCccEEEecCcCcCCCCcceEEEE-cccccccC
Q 017640          222 ASILPIEEIVHWSHDVGAKVLVDACQSVPHM-------VVD-VQ--GLDADFLVASSHKMCGPTGIGFLFG-KSDLLSAM  290 (368)
Q Consensus       222 G~~~~l~~i~~l~~~~g~~li~D~a~~~~~~-------~~~-~~--~~~~d~~~~s~~K~~g~~G~G~l~~-~~~li~~l  290 (368)
                      |.+.|+++|.++|++||+++|+|++|+.+..       ..+ ..  ..+..+++.|++|.+|++| |++++ ++++++.+
T Consensus       193 G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~G-g~~~~~~~~~~~~~  271 (402)
T PRK07505        193 GGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGASG-GVIMLGDAEQIELI  271 (402)
T ss_pred             CCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhccC-eEEEeCCHHHHHHH
Confidence            9999999999999999999999999864211       111 11  2234678889999988776 77765 66676665


Q ss_pred             CCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 017640          291 PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSII  358 (368)
Q Consensus       291 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~  358 (368)
                      .....++                  .| .++++..+.+++.++++.+.+..+....+++.+....+..
T Consensus       272 ~~~~~~~------------------t~-~~~~~~~a~aa~~a~l~~~~~~~~~~~~~~l~~~~~~~~~  320 (402)
T PRK07505        272 LRYAGPL------------------AF-SQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIALFDS  320 (402)
T ss_pred             HHhCCCc------------------ee-CCCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence            4322211                  11 3467777888888888876655555555555555554433

>PRK08637 hypothetical protein; Provisional

Probab=99.84  E-value=3.1e-19  Score=169.74  Aligned_cols=166  Identities=18%  Similarity=0.155  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHHcC-----CCCC--CcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCC
Q 017640          111 DEYELARKKVAAFIN-----ASDS--GEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGA  183 (368)
Q Consensus       111 ~~~~~~r~~la~~~~-----~~~~--~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~  183 (368)
                      .....+|+.+++++.     ..++  ++|++|+|+++++.+++.++    +++||.|++.+|.|+.....+   +...|+
T Consensus        44 ~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l----~~~gd~Vlv~~P~y~~~~~~~---~~~~g~  116 (388)
T PRK08637         44 QGIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLF----VDQGDTVLLPDHNWGNYKLTF---NTRRGA  116 (388)
T ss_pred             CCCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHh----cCCCCEEEEcCCCCccHHHHH---HHhcCC
Confidence            334567777777653     2222  47899999999999999988    899999999999888744322   234699


Q ss_pred             EEEEEeCC-CCCCCCHHHHHHhcc----cCceEEEEcccccccccccC---HHHHHHHHHh-----cCCEEEEecCCcCC
Q 017640          184 NLKFLNLN-DDESPDLDKLKEMLS----RKTKLVVIHHISNMLASILP---IEEIVHWSHD-----VGAKVLVDACQSVP  250 (368)
Q Consensus       184 ~v~~v~~~-~~~~~d~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~-----~g~~li~D~a~~~~  250 (368)
                      +++.+++. +++.+|+++++++++    +.++++++++|+||||.+++   +++|+++|++     |+++||+|++|..-
T Consensus       117 ~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l  196 (388)
T PRK08637        117 EIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGL  196 (388)
T ss_pred             EEEEecccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhc
Confidence            99999984 556789999999886    45567889999999999999   6677777764     89999999998621


Q ss_pred             c----c--cc--cC-CCCCc--cEEEecCcCcCCCCc--ceEEEEc
Q 017640          251 H----M--VV--DV-QGLDA--DFLVASSHKMCGPTG--IGFLFGK  283 (368)
Q Consensus       251 ~----~--~~--~~-~~~~~--d~~~~s~~K~~g~~G--~G~l~~~  283 (368)
                      .    .  ++  .+ +..+.  .+++.|++|.|+.+|  +||+++.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~  242 (388)
T PRK08637        197 FYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFG  242 (388)
T ss_pred             ccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEc
Confidence            1    1  10  11 11122  234559999988888  9999865

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.84  E-value=2.1e-18  Score=177.28  Aligned_cols=278  Identities=15%  Similarity=0.129  Sum_probs=183.2

Q ss_pred             CCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeC-CHHHHHHH
Q 017640           66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTK-NATEAINL  144 (368)
Q Consensus        66 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~-g~t~a~~~  144 (368)
                      ..++.|+. .+...++.+...+...-.-..-.|+ .....+.+..+.+.++++++++++|.+   ++.+++ ++++|...
T Consensus       499 ~~~i~lGs-ct~~~~p~~~~~~~~~~~f~~~hP~-qp~e~~qG~l~~i~e~q~~l~eltG~d---~~sl~~~~ga~ge~a  573 (954)
T PRK05367        499 RSMIPLGS-CTMKLNAAAEMIPITWPEFANLHPF-APAEQAAGYRELIDQLEAWLAEITGYD---AVSLQPNAGAQGEYA  573 (954)
T ss_pred             cceeeCCc-CCCcCCHHHHHHHHhCccccccCCC-ChHHHHHHHHHHHHHHHHHHHHHHCCC---CEEECccHHHHHHHH
Confidence            45677777 3335555555554433211111122 111334567899999999999999986   566665 44555534


Q ss_pred             HHHHccCCCCCCCC----EEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc---CceEEEEccc
Q 017640          145 VAYSWGLSNLKSGD----EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR---KTKLVVIHHI  217 (368)
Q Consensus       145 ~~~~~~~~~~~~gd----~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~---~~~~v~~~~~  217 (368)
                      .+.+++..+.++|+    +|++++..|.++...    +...|.+++.++++.+|.+|+++|++++++   ++.+|+++++
T Consensus       574 gL~a~r~~~~~~G~~~r~~vlis~~aH~snp~s----a~~~G~~vv~v~~d~~G~iD~~~L~~~i~~~~~~la~V~it~p  649 (954)
T PRK05367        574 GLLAIRAYHESRGEGHRDVCLIPSSAHGTNPAS----AVMAGMKVVVVACDENGNIDLDDLRAKAEEHADNLAAIMITYP  649 (954)
T ss_pred             HHHHHHHHhhccCCCCCCEEEEEchhhhhhHHH----HHHCCCEEEEECCCCCCCcCHHHHHHHHhccCCCeEEEEEEcC
Confidence            33333211345554    699999999987654    456699999999998899999999999965   4678889998


Q ss_pred             ccccccccCHHHHHHHHHhcCCEEEEecCCcCCccccc-CCCCCccEEEecCcCcC------CCCcceEEEEcccccccC
Q 017640          218 SNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD-VQGLDADFLVASSHKMC------GPTGIGFLFGKSDLLSAM  290 (368)
Q Consensus       218 ~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~-~~~~~~d~~~~s~~K~~------g~~G~G~l~~~~~li~~l  290 (368)
                      ++..+...|+++|+++||++|+++++|+++..+...+. ...++.|++++|+||+|      |++|+|++++++.+.   
T Consensus       650 st~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~~pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~---  726 (954)
T PRK05367        650 STHGVFEETIREICEIVHEHGGQVYLDGANMNAQVGLARPGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLA---  726 (954)
T ss_pred             CCCeeecCCHHHHHHHHHHcCCEEEEECcChhhccCCCChhhcCCCEEEecCcccCCCCcCCCCCceEEEeeccccc---
Confidence            88744457899999999999999999999986655553 34678999999999974      455688999986554   


Q ss_pred             CCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHH---HHHHHHHHHHHHHHHHHHhhc
Q 017640          291 PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQ---KIHAYEVKWIICSIIVIQERH  364 (368)
Q Consensus       291 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~---~i~~~~~~l~~~l~~~l~~~~  364 (368)
                       |++.|+.......       .....+.. +.++.+...+..+..++...|.+   ++.++...+++|+.++|.+..
T Consensus       727 -p~lpg~~v~~~~~-------~~~~g~v~-ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~~  794 (954)
T PRK05367        727 -PFLPGHPVQIAGG-------ETGIGAVS-AAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDHY  794 (954)
T ss_pred             -ccCCCCccCcCCC-------CCCcCcch-hHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence             4444432110000       00001111 33333334455556666666555   555555599999999998764

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.84  E-value=7.8e-19  Score=161.63  Aligned_cols=253  Identities=15%  Similarity=0.108  Sum_probs=176.9

Q ss_pred             CcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCC
Q 017640           79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD  158 (368)
Q Consensus        79 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd  158 (368)
                      ......+++.+.+...+-.+           .+..+++++.+++++|+.   ..+.++|+|.|+.++++++   .+.+||
T Consensus        13 i~~~e~~~v~~vl~sg~i~~-----------G~~v~~FE~~~ae~~G~k---~ava~~sgT~AL~laL~al---~ig~GD   75 (374)
T COG0399          13 IGEEELAAVQEVLKSGWLTG-----------GPFVRRFEQAFAEYLGVK---YAVAVSSGTAALHLALLAL---AIGPGD   75 (374)
T ss_pred             cchHHHHHHHHHHHcCCeec-----------ChHHHHHHHHHHHHhCCC---eEEEecChHHHHHHHHHhc---CCCCCC
Confidence            45667777777776532221           344568999999999998   6688899999999999988   489999


Q ss_pred             EEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC-CCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhc
Q 017640          159 EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDV  237 (368)
Q Consensus       159 ~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~  237 (368)
                      +|++++-.|.++.....    ..|+++++|+++++ +.+|++.||++|+++||+|+..|.   -|...++++|.++|++|
T Consensus        76 eVI~ps~TfvATan~i~----~~Ga~PVFvDid~~T~nid~~~ie~aIt~~tKAIipVhl---~G~~~dm~~i~~la~~~  148 (374)
T COG0399          76 EVIVPSFTFVATANAVL----LVGAKPVFVDIDPDTLNIDPDLIEAAITPRTKAIIPVHL---AGQPCDMDAIMALAKRH  148 (374)
T ss_pred             EEEecCCchHHHHHHHH----HcCCeEEEEecCCcccCCCHHHHHHHcccCCeEEEEehh---ccCCCCHHHHHHHHHHc
Confidence            99999998887655443    45999999999966 999999999999999999999998   88999999999999999


Q ss_pred             CCEEEEecCCcCCcccccCCCC--CccEEEecC--cCcCCCCcceEEEEcc-cccccCCCcccCCcceeecccCCCCCCC
Q 017640          238 GAKVLVDACQSVPHMVVDVQGL--DADFLVASS--HKMCGPTGIGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFAD  312 (368)
Q Consensus       238 g~~li~D~a~~~~~~~~~~~~~--~~d~~~~s~--~K~~g~~G~G~l~~~~-~li~~l~~~~~g~~~~~~~~~~~~~~~~  312 (368)
                      |++||.|++|+.|.. ..-...  --|+.++||  .|.++-...|++..++ ++.++++....-|-....    ..+|..
T Consensus       149 ~l~vIEDaAqa~Ga~-y~gk~vGt~Gd~~~fSF~~~K~ittgEGGav~tnd~ela~k~~~lr~hG~~~~~----~~~y~~  223 (374)
T COG0399         149 GLPVIEDAAQAHGAT-YKGKKVGSFGDIGAFSFHATKNLTTGEGGAVVTNDEELAEKARSLRNHGLSRDA----VFKYLH  223 (374)
T ss_pred             CCeEEEEcchhccCe-ecCcccccccceEEEEecCCCCccccCceEEEeCCHHHHHHHHHHHHhCcCCCc----ccccee
Confidence            999999999999886 222221  135555555  4666543457777766 455666544332221100    001111


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          313 PPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       313 ~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      ..-.+..--.+      +.+|+-..+-..++.+.++.++++++..+.|++.+++
T Consensus       224 ~~~G~N~rm~~------iqAAigl~QL~~l~~~~~~R~~~a~~Y~~~l~~~~~~  271 (374)
T COG0399         224 EELGYNYRLTE------IQAAIGLAQLERLDEINERRREIAQIYAEALKGLPGI  271 (374)
T ss_pred             eecccccCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence            11112111112      2222332232236778888889999999999887654

>PRK10534 L-threonine aldolase; Provisional

Probab=99.84  E-value=8.9e-20  Score=170.00  Aligned_cols=204  Identities=16%  Similarity=0.184  Sum_probs=141.9

Q ss_pred             EeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHc
Q 017640           70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSW  149 (368)
Q Consensus        70 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~  149 (368)
                      -|..+....+++.+.+++.+.......          +.......++++.+++++|.+   .+++++|+++++..++.++
T Consensus         3 ~~~~~~~~~p~~~~~~a~~~~~~~~~~----------Y~~~~~~~~L~~~la~~~g~~---~~~v~~~g~~a~~~~l~~~   69 (333)
T PRK10534          3 DLRSDTVTRPSRAMLEAMMAAPVGDDV----------YGDDPTVNALQDYAAELSGKE---AALFLPTGTQANLVALLSH   69 (333)
T ss_pred             ccccccCCCCCHHHHHHHHhccCCCcc----------cCCCHHHHHHHHHHHHHhCCC---eEEEeCchHHHHHHHHHHh
Confidence            344455555888999998654332111          111345568999999999986   3468888888888888776


Q ss_pred             cCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc------CceEEEEccccccccc
Q 017640          150 GLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR------KTKLVVIHHISNMLAS  223 (368)
Q Consensus       150 ~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~~n~tG~  223 (368)
                          +.+||+|+++.+.|...+... ......+++++.++.++++.+|+++|++++++      ++++|++++++  ||.
T Consensus        70 ----~~~gd~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G~  142 (333)
T PRK10534         70 ----CERGEEYIVGQAAHNYLYEAG-GAAVLGSIQPQPIDAAADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH--NGK  142 (333)
T ss_pred             ----cCCCCeeEEechhhhhHhcCC-chHHhcCceEEeecCCCCCCCCHHHHHHhhcccCcCcccceEEEEecCC--CCe
Confidence                789999999888775433211 01112236888888887899999999999976      58899999755  699


Q ss_pred             ccCHH---HHHHHHHhcCCEEEEecCCcCCcc---cccCC--CCCccEEEecCcCcCCCCcce-EEEEcccccccCCCcc
Q 017640          224 ILPIE---EIVHWSHDVGAKVLVDACQSVPHM---VVDVQ--GLDADFLVASSHKMCGPTGIG-FLFGKSDLLSAMPPFL  294 (368)
Q Consensus       224 ~~~l~---~i~~l~~~~g~~li~D~a~~~~~~---~~~~~--~~~~d~~~~s~~K~~g~~G~G-~l~~~~~li~~l~~~~  294 (368)
                      ++|.+   +|.++|++||+++++|++|..+..   .....  ....|.++.|+||.||.+ +| +++.++++++.++...
T Consensus       143 v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~-~G~~~~~~~~~i~~~~~~~  221 (333)
T PRK10534        143 VLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTP-VGSLLVGNRDYIKRARRWR  221 (333)
T ss_pred             ecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHHhcCCEEEEEeEcCCCCc-ccceEEcCHHHHHHHHHHH
Confidence            99955   556788999999999999774321   00110  112465566899988865 56 6888999888776443

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.83  E-value=4.7e-19  Score=166.83  Aligned_cols=232  Identities=17%  Similarity=0.188  Sum_probs=155.6

Q ss_pred             HHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeC
Q 017640          111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL  190 (368)
Q Consensus       111 ~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~  190 (368)
                      ...+++++.+++++|.+   .++.++|+|.|+.+++.++   .+++||+|+++...++++..++..    .|++++++++
T Consensus        25 ~~~~~fE~~~a~~~g~~---~~~~~~sgt~Al~~al~~l---~~~~gdeVi~p~~t~~~~~~ai~~----~G~~pv~~Di   94 (363)
T PF01041_consen   25 PYVEEFEKEFAEYFGVK---YAVAVSSGTSALHLALRAL---GLGPGDEVIVPAYTFPATASAILW----AGAEPVFVDI   94 (363)
T ss_dssp             HHHHHHHHHHHHHHTSS---EEEEESSHHHHHHHHHHHT---TGGTTSEEEEESSS-THHHHHHHH----TT-EEEEE-B
T ss_pred             HHHHHHHHHHHHHhCCC---eEEEeCChhHHHHHHHHhc---CCCcCceEecCCCcchHHHHHHHH----hccEEEEEec
Confidence            45668999999999976   7899999999999999998   588999999999988887655544    4999999999


Q ss_pred             C-CCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCccccc--CCCCCccEEEec
Q 017640          191 N-DDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD--VQGLDADFLVAS  267 (368)
Q Consensus       191 ~-~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~--~~~~~~d~~~~s  267 (368)
                      + +++.+|++.+++++++++++|++.|.   .|...++++|.++|++||++||.|++|++|..--.  ... .-|+.++|
T Consensus        95 ~~~~~~id~~~~~~~i~~~t~ai~~~h~---~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~~G~-~gd~~~fS  170 (363)
T PF01041_consen   95 DPETLNIDPEALEKAITPKTKAILVVHL---FGNPADMDAIRAIARKHGIPLIEDAAQAFGARYKGRPVGS-FGDIAIFS  170 (363)
T ss_dssp             ETTTSSB-HHHHHHHHHTTEEEEEEE-G---GGB---HHHHHHHHHHTT-EEEEE-TTTTT-EETTEETTS-SSSEEEEE
T ss_pred             cCCcCCcCHHHHHHHhccCccEEEEecC---CCCcccHHHHHHHHHHcCCcEEEccccccCceeCCEeccC-CCCceEec
Confidence            9 56999999999999999999999998   78888999999999999999999999999875211  122 24888888


Q ss_pred             Cc--CcCCCCcceEEEEccc-ccccCCCcccCCcceeecccCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHhCHH
Q 017640          268 SH--KMCGPTGIGFLFGKSD-LLSAMPPFLGGGEMISDVFLDHSTFADPP-SRFEAGTPAIGEAIGLGAAIDYLSTIGMQ  343 (368)
Q Consensus       268 ~~--K~~g~~G~G~l~~~~~-li~~l~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~gt~~~~~~~a~~~al~~~~~~g~~  343 (368)
                      ++  |.+.....|+++++++ +.++++.+...|... .   ....+.... -.+.....+    +.++.++..++  .++
T Consensus       171 f~~~K~i~~geGG~v~~~~~~~~~~~~~~~~~g~~~-~---~~~~~~~~~~~g~n~rm~~----~~AAigl~QL~--~L~  240 (363)
T PF01041_consen  171 FHPTKIITTGEGGAVVTNDPELAERARALRNHGRSR-D---AFRRYRHELPPGYNFRMSE----LQAAIGLAQLK--RLD  240 (363)
T ss_dssp             SSTTSSS-SSS-EEEEESTHHHHHHHHHHTBTTEET-S---ECSTTEESSSS--B-B-BH----HHHHHHHHHHH--THH
T ss_pred             CCCCCCCcCCCCeeEEecHHHHHHHhhhhhccCcCc-c---ccccccccccCCcccccHH----HHHHHHHHHHH--Hhh
Confidence            85  7665443689888764 444444332211110 0   000000000 011111111    12222333333  367


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCC
Q 017640          344 KIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       344 ~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      ...++.+++.+++.+.|.+++++
T Consensus       241 ~~~~~R~~~a~~y~~~L~~~~~~  263 (363)
T PF01041_consen  241 EIIARRRENAQRYREALAGIPGI  263 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHTTGTTE
T ss_pred             hhHHHHHHHHHHHHHHHhcCCCc
Confidence            77888889999999999988764

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.83  E-value=1.3e-18  Score=166.02  Aligned_cols=246  Identities=15%  Similarity=0.163  Sum_probs=168.4

Q ss_pred             CCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCC
Q 017640           77 SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKS  156 (368)
Q Consensus        77 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~  156 (368)
                      ++.++.+.+++.+.+.......  ..+.     .....++.+.++++++.+..+++++++|+++|+..+++.+.   ...
T Consensus        58 G~~~p~v~~ai~~~~~~~~~~~--~~~~-----~~~~~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~---~~g  127 (398)
T PRK03244         58 GHAHPAVVEAVTRQLATLGHVS--NLFA-----TEPQIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLAR---LTG  127 (398)
T ss_pred             CCCCHHHHHHHHHHHHhccCcc--CccC-----CHHHHHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHH---HHC
Confidence            4557999999999888643211  1111     12234789999999886433489999999999999999762   222


Q ss_pred             CCEEEEcCCCCcccHHHHHHHHHH---------cCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccC-
Q 017640          157 GDEVILTVAEHHSAIVPWQLVAQK---------TGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILP-  226 (368)
Q Consensus       157 gd~vl~~~~~~~s~~~~~~~~~~~---------~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~-  226 (368)
                      ++.|+..++.|++...........         .+.++..+|.     .|++.+++.+.+++++|+++.++||+|.+.| 
T Consensus       128 ~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~~~~~~aviiep~~~~~G~~~~~  202 (398)
T PRK03244        128 RTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPY-----GDVDALAAAVDDDTAAVFLEPIQGEAGVVPPP  202 (398)
T ss_pred             CCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCC-----CCHHHHHHhhcCCeEEEEEecccCCCCCcCCC
Confidence            356777777888765433322110         0112333333     2789999999878999999999999999998 


Q ss_pred             ---HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEEecCcCcCCC-CcceEEEEcccccccCCCcccCC
Q 017640          227 ---IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGP-TGIGFLFGKSDLLSAMPPFLGGG  297 (368)
Q Consensus       227 ---l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~g~-~G~G~l~~~~~li~~l~~~~~g~  297 (368)
                         +++|.++|++||+++|+||+|+ +|..    .+......+|++  +++|.+|+ -.+|++++++++++.+.+...+ 
T Consensus       203 ~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pDi~--t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~~-  279 (398)
T PRK03244        203 AGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPDVV--TLAKGLGGGLPIGACLAFGPAADLLTPGLHG-  279 (398)
T ss_pred             HHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCCCCCEE--EEchhhhCCcccEEEEEcHHHHhhccCCCCc-
Confidence               8899999999999999999986 2211    112233457876  55698773 2289999999887766543211 


Q ss_pred             cceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          298 EMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                                       ..|   ..+.....++.++++.+.+   +.+.+++.++.+++.+.|++.
T Consensus       280 -----------------~t~---~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~  322 (398)
T PRK03244        280 -----------------STF---GGNPVACAAALAVLDTIAS---EGLLENAERLGEQLRAGIEAL  322 (398)
T ss_pred             -----------------CCC---CCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHhc
Confidence                             111   3455666667777776654   346688888888888888764

>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]

Probab=99.83  E-value=3.1e-19  Score=154.57  Aligned_cols=319  Identities=14%  Similarity=0.150  Sum_probs=248.8

Q ss_pred             cchhhhhcCCCCccccccc---------CCCCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHH-HHHHHH
Q 017640           45 VSLGHITRPDFPILHQEVY---------GSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAK-ATDEYE  114 (368)
Q Consensus        45 ~~~~~~~r~~f~~~~~~~~---------~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  114 (368)
                      .+..+.+|+.|-+-.-..-         .+...|||=.++.|.+|+.+.+.+.+.++.|..-.- -.|..|.. |...-+
T Consensus        36 ~d~l~~~Rd~F~iPk~~~lp~~d~sLv~~d~~~iYlcGNSLGLmPK~t~~~~~~eLDkWak~av-~gH~~GkvPW~~~De  114 (465)
T KOG3846|consen   36 SDYLESLRDEFNIPKFKSLPDADPSLVSDDKPVIYLCGNSLGLMPKSTRNSINAELDKWAKCAV-EGHFKGKVPWVSIDE  114 (465)
T ss_pred             chhHHHHHHHhcCCccccCCCCCccccCCCCCeEEEeccccccCchhhHhHHHHHHHHHHhhhh-hcccccccceeecch
Confidence            3455677877754321111         136789999999999999999999999988754322 12333322 333344


Q ss_pred             HHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEE----EEEeC
Q 017640          115 LARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANL----KFLNL  190 (368)
Q Consensus       115 ~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v----~~v~~  190 (368)
                      .+-..++...|+... +|.++++-|.-+..++.+|=. +..++-+|++....|+|..+++..-++..|..+    +.+..
T Consensus       115 ~il~l~~~iVGA~e~-EvavmNsLTvNlh~Ll~sFyK-PTekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~ieP  192 (465)
T KOG3846|consen  115 PILPLLAPIVGAQEN-EVAVMNSLTVNLHSLLISFYK-PTEKRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQIEP  192 (465)
T ss_pred             hhhhhhhhhccCCch-hhhhHhhhhhHHHHHHHHhcC-CcchhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEEecc
Confidence            577788999999875 899999999889988888811 223344799999999999999999999988764    33433


Q ss_pred             CCC-CCCCHHHHHHhccc---CceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEe
Q 017640          191 NDD-ESPDLDKLKEMLSR---KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVA  266 (368)
Q Consensus       191 ~~~-~~~d~~~l~~~l~~---~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~  266 (368)
                      .+. ..+..+++.+.|..   ..++|+++.++..||+.+++.+|...-+..|+++=.|-+|++|.+|+-+.+|++||.|.
T Consensus       193 REGEetlRteDILd~IEkngDeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvgNVpL~LHdWgVDFACW  272 (465)
T KOG3846|consen  193 REGEETLRTEDILDTIEKNGDEIALVCFSGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHAVGNVPLQLHDWGVDFACW  272 (465)
T ss_pred             cccccchhHHHHHHHHHhcCCeEEEEEeecceeecccccchhhhhhcccCCCcEechhhhhhhcCCceEEeecCCceEEE
Confidence            322 45566777766654   46899999999999999999999976677899999999999999999999999999999


Q ss_pred             cCcCcC--CCCcceEEEEcccccccCCCcccCCcceee---ccc-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 017640          267 SSHKMC--GPTGIGFLFGKSDLLSAMPPFLGGGEMISD---VFL-DHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI  340 (368)
Q Consensus       267 s~~K~~--g~~G~G~l~~~~~li~~l~~~~~g~~~~~~---~~~-~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~  340 (368)
                      ..+|.+  |+.|+|-+++.++.....+|.+.||....-   +.+ +-.++.+...+|....|++..++++..+++.+.+.
T Consensus       273 CSYKYlnaGaGgIgGlFvHekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F~q~  352 (465)
T KOG3846|consen  273 CSYKYLNAGAGGIGGLFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELFAQF  352 (465)
T ss_pred             eeecccccCCCccceeeeehhhhcchhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHHHHh
Confidence            999943  566688899999988888899988876542   112 22556677888998899999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          341 GMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       341 g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      .++.++++..-|..|+...++...|.
T Consensus       353 ~~~~lRkrS~lLTgYleyL~k~~~g~  378 (465)
T KOG3846|consen  353 NINELRKRSLLLTGYLEYLLKASKGY  378 (465)
T ss_pred             hHHHHhhhhhhHHhHHHHHHHHhccc
Confidence            99999999999999999988877663

>PLN02397 aspartate transaminase

Probab=99.83  E-value=3.6e-19  Score=170.75  Aligned_cols=269  Identities=13%  Similarity=0.047  Sum_probs=163.2

Q ss_pred             CCeEEeccCCC-CC-CcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCC-----CCcE--EEeC
Q 017640           66 KKLVYLDNAAT-SQ-KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD-----SGEI--VFTK  136 (368)
Q Consensus        66 ~~~i~l~~~~~-~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~-----~~~v--~~t~  136 (368)
                      +..+.++.+.. .+ .++.+.+.+.+..........    ...+.......++|+++++++....     ++.|  ..+.
T Consensus        48 ~~~l~l~~g~~p~~~~~p~~~~~~~~a~~~~~~~~~----~~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~  123 (423)
T PLN02397         48 PVKLNLGVGAYRTEEGKPVVLNVVRKAEQRLLAGSR----NKEYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCL  123 (423)
T ss_pred             cceEecccceeeCCCCCcccchHHHHHHHHhhccCC----CCCCCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecc
Confidence            45677777752 33 344555555555433211111    1112224455688888888763321     1233  1133


Q ss_pred             CHHHH--HHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeC-C-CCCCCCHHHHHHhcc---cCc
Q 017640          137 NATEA--INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL-N-DDESPDLDKLKEMLS---RKT  209 (368)
Q Consensus       137 g~t~a--~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~-~-~~~~~d~~~l~~~l~---~~~  209 (368)
                      +++.+  +...+..+    +.+||+|++++|.|+.    +...++..|++++.+++ + +++.+|++.+++.+.   +++
T Consensus       124 ~g~Ga~~l~~~~~~~----~~pGd~Vlv~~P~y~~----y~~~~~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~  195 (423)
T PLN02397        124 SGTGSLRLGAEFLAR----FYPGSTIYIPNPTWGN----HHNIFRDAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAPDGS  195 (423)
T ss_pred             cchHHHHHHHHHHHH----hCCCCEEEEeCCCchh----HHHHHHHcCCeEEEeecccCcCCccCHHHHHHHHHhCCCCC
Confidence            33333  33333333    5699999999998877    45556677999999997 3 347889998887775   467


Q ss_pred             eEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc--------cc-cCCC-CCccEEEecCcCcCCCCc
Q 017640          210 KLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM--------VV-DVQG-LDADFLVASSHKMCGPTG  276 (368)
Q Consensus       210 ~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~--------~~-~~~~-~~~d~~~~s~~K~~g~~G  276 (368)
                      +++++++|+||||.+++   +++|+++|++||+++|+|++|..-..        ++ .+.. ....+++.|+||.|+++|
T Consensus       196 ~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G  275 (423)
T PLN02397        196 FVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYG  275 (423)
T ss_pred             EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCcc
Confidence            89999999999999999   67888899999999999999872211        11 1111 124588889999999988


Q ss_pred             --ceEEE--E-cccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH---HHh--CHHHHH
Q 017640          277 --IGFLF--G-KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL---STI--GMQKIH  346 (368)
Q Consensus       277 --~G~l~--~-~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~---~~~--g~~~i~  346 (368)
                        +||++  + ++++++.+.......                 .+......+.....++..+++.-   +..  .++.++
T Consensus       276 ~RvG~~v~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~  338 (423)
T PLN02397        276 ERVGALSVVCKSADVAVRVKSQLKLI-----------------ARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMA  338 (423)
T ss_pred             ccceEEEEEeCCHHHHHHHHHHHHHH-----------------HhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence              99985  4 344433222110000                 00001123444444444444321   111  145677


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 017640          347 AYEVKWIICSIIVIQER  363 (368)
Q Consensus       347 ~~~~~l~~~l~~~l~~~  363 (368)
                      ++.++.++.+.+.|.++
T Consensus       339 ~~~~~rr~~l~~~L~~~  355 (423)
T PLN02397        339 DRIISMRQKLYDALEAR  355 (423)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            78888888888888876

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=99.83  E-value=3.5e-20  Score=172.87  Aligned_cols=225  Identities=19%  Similarity=0.214  Sum_probs=164.9

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      ...+.+.++.+|+.+|++.  ..++++|+|.++..++.++    +++||.|++...+|.|++.++.    ..|+++++++
T Consensus        65 ~G~I~eAe~~aA~~fGAd~--t~flvnGsT~g~~a~i~a~----~~~gd~VLv~RN~HkSv~~ali----l~ga~Pvyi~  134 (417)
T PF01276_consen   65 EGIIKEAEELAARAFGADK--TFFLVNGSTSGNQAMIMAL----CRPGDKVLVDRNCHKSVYNALI----LSGAIPVYIP  134 (417)
T ss_dssp             BTHHHHHHHHHHHHHTESE--EEEESSHHHHHHHHHHHHH----TTTTCEEEEETT--HHHHHHHH----HHTEEEEEEE
T ss_pred             ccHHHHHHHHHHHhcCCCe--EEEEecCchHHHHHHHHHh----cCCCCEEEEcCCcHHHHHHHHH----HcCCeEEEec
Confidence            3457789999999999983  6788899999999999998    9999999999999999887544    4499999998


Q ss_pred             CCCC-----CCCCH-----HHHHHhcccC-----ceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCc--c
Q 017640          190 LNDD-----ESPDL-----DKLKEMLSRK-----TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPH--M  252 (368)
Q Consensus       190 ~~~~-----~~~d~-----~~l~~~l~~~-----~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~--~  252 (368)
                      ...+     +.+++     +.++++|++.     ++++++++|+. .|.++++++|+++|+++++.|++|+||+.-.  .
T Consensus       135 p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY-~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~  213 (417)
T PF01276_consen  135 PEDNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTY-YGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFH  213 (417)
T ss_dssp             EEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-T-TSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCS
T ss_pred             CCccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCC-CeEEECHHHHHHHhcccCCEEEEEccccccccCC
Confidence            7622     34566     8899988753     24489999854 7999999999999999999999999998421  1


Q ss_pred             cc--cCCCCCcc-------EEEecCcCcC-CCCcceEEEEcccc-cc--cCCCcccCCcceeecccCCCCCCCCCCCCCC
Q 017640          253 VV--DVQGLDAD-------FLVASSHKMC-GPTGIGFLFGKSDL-LS--AMPPFLGGGEMISDVFLDHSTFADPPSRFEA  319 (368)
Q Consensus       253 ~~--~~~~~~~d-------~~~~s~~K~~-g~~G~G~l~~~~~l-i~--~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  319 (368)
                      ++  +.-..+.|       +++-|.||.+ +....++|.++.+. ++  +++..+                    ..+.+
T Consensus       214 ~lp~~a~~~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v~~~~~~~~l--------------------~~~~T  273 (417)
T PF01276_consen  214 PLPRSALALGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIVDHERVNEAL--------------------SMHQT  273 (417)
T ss_dssp             GGGTTCSSTTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCTTHHHHHHHH--------------------HHHS-
T ss_pred             CCccchhhccCccccccceeeeechhhcccccccceEEEecCCCcccHHHHHHHH--------------------HHHcC
Confidence            22  23345788       9999999965 46668999998875 32  222211                    23456


Q ss_pred             CCCCHHHHHHHHHHHHHH-HHhCHHHHHHHHHHHHHHHHHHH---HhhcCC
Q 017640          320 GTPAIGEAIGLGAAIDYL-STIGMQKIHAYEVKWIICSIIVI---QERHNT  366 (368)
Q Consensus       320 gt~~~~~~~a~~~al~~~-~~~g~~~i~~~~~~l~~~l~~~l---~~~~g~  366 (368)
                      .+|+++.++++..+.+++ ...| +++.++..+++..++++|   .+++++
T Consensus       274 TSPSY~lmASlD~a~~~m~~~~G-~~l~~~~i~~a~~~R~~i~~~~~~~~~  323 (417)
T PF01276_consen  274 TSPSYPLMASLDVARAQMEEEEG-RELLEEAIELAEEFRKKINRLNDIWGF  323 (417)
T ss_dssp             SS--HHHHHHHHHHHHHHSHHHH-HHHHHHHHHHHHHHHHHHHHHCCT-SS
T ss_pred             CChHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence            789999999999999999 4444 666688888888899998   445554

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=99.83  E-value=1.1e-18  Score=155.19  Aligned_cols=167  Identities=19%  Similarity=0.286  Sum_probs=145.4

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      .+..+.++++++.+-|--..   +.+.++..|+..++..+    .++||.|+.++.-|.+++..+....++.|+++++|.
T Consensus        61 NPT~~vlE~RiAaLEGG~aa---~a~aSG~AA~~~ai~~l----a~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd  133 (426)
T COG2873          61 NPTTDVLEERIAALEGGVAA---LAVASGQAAITYAILNL----AGAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVD  133 (426)
T ss_pred             CchHHHHHHHHHHhhcchhh---hhhccchHHHHHHHHHh----ccCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeC
Confidence            45556789999998886533   67778889999999988    899999999999999999999998899999999999


Q ss_pred             CCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCc
Q 017640          190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH  269 (368)
Q Consensus       190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~  269 (368)
                      .+     |++.++++|+++||+|+++...||.+.+.|++.|+++||+||+++|+|.+-+.+.+ +..-+.+.|+++.|.+
T Consensus       134 ~~-----d~~~~~~aI~~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpyl-~rP~~hGADIVvHS~T  207 (426)
T COG2873         134 PD-----DPENFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYL-CRPIEHGADIVVHSAT  207 (426)
T ss_pred             CC-----CHHHHHHHhCcccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCccee-cchhhcCCCEEEEeec
Confidence            77     89999999999999999999999999999999999999999999999999988755 3344678999999999


Q ss_pred             CcCCCCc--ceEEEEccccccc
Q 017640          270 KMCGPTG--IGFLFGKSDLLSA  289 (368)
Q Consensus       270 K~~g~~G--~G~l~~~~~li~~  289 (368)
                      |+.|+.|  +|-++++-...+.
T Consensus       208 K~igGhGt~iGG~iVD~G~FDw  229 (426)
T COG2873         208 KYIGGHGTAIGGVIVDGGKFDW  229 (426)
T ss_pred             ccccCCccccceEEEeCCcccc
Confidence            9999888  6666665544443

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.83  E-value=2.8e-19  Score=167.49  Aligned_cols=224  Identities=18%  Similarity=0.174  Sum_probs=165.9

Q ss_pred             chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcC
Q 017640          103 HFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTG  182 (368)
Q Consensus       103 ~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g  182 (368)
                      +.+++...+....+++.|+++.|..   .++++++|..|+..++.++    +++||+|+++...|.+++..+.......|
T Consensus        47 ~~Y~R~gnPt~~~le~~la~Le~g~---~a~~~~SGmaAi~~~l~~l----l~~Gd~iv~~~~~Y~~t~~~~~~~l~~~g  119 (386)
T PF01053_consen   47 YIYSRYGNPTVRALEQRLAALEGGE---DALLFSSGMAAISAALLAL----LKPGDHIVASDDLYGGTYRLLEELLPRFG  119 (386)
T ss_dssp             CSBTTTC-HHHHHHHHHHHHHHT-S---EEEEESSHHHHHHHHHHHH----S-TTBEEEEESSSSHHHHHHHHHCHHHTT
T ss_pred             cceeccccccHHHHHHHHHHhhccc---ceeeccchHHHHHHHHHhh----cccCCceEecCCccCcchhhhhhhhcccC
Confidence            4445555677778999999999985   6788899999999999998    89999999999999999988888888899


Q ss_pred             CEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcC-CEEEEecCCcCCcccccCCCCCc
Q 017640          183 ANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVG-AKVLVDACQSVPHMVVDVQGLDA  261 (368)
Q Consensus       183 ~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g-~~li~D~a~~~~~~~~~~~~~~~  261 (368)
                      +++.+++..     |++++++++++++++|+++.|.||+..+.|+++|+++||++| +++++|.+.+.+.. .+.-.++.
T Consensus       120 v~v~~~d~~-----d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~~-~~pL~~Ga  193 (386)
T PF01053_consen  120 VEVTFVDPT-----DLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATPYN-QNPLELGA  193 (386)
T ss_dssp             SEEEEESTT-----SHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHTTT-C-GGGGT-
T ss_pred             cEEEEeCch-----hHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccceee-eccCcCCc
Confidence            999999876     899999999999999999999999999999999999999998 99999999986643 22234679


Q ss_pred             cEEEecCcCcCCCCc---ceEEEEcc--cccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 017640          262 DFLVASSHKMCGPTG---IGFLFGKS--DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY  336 (368)
Q Consensus       262 d~~~~s~~K~~g~~G---~G~l~~~~--~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~  336 (368)
                      |+++.|++|++++.+   +|.+++++  ++.+.++....-.+                     .+.+...   +...++-
T Consensus       194 Divv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G---------------------~~~~p~d---a~ll~rg  249 (386)
T PF01053_consen  194 DIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLG---------------------ATLSPFD---AWLLLRG  249 (386)
T ss_dssp             SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT----------------------B--HHH---HHHHHHH
T ss_pred             eEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcC---------------------ccchHHH---HHHHhcC
Confidence            999999999998887   88888776  55554442211000                     0111111   1111222


Q ss_pred             HHHhCHHHHHHHHHHHHHHHHHHHHhhcC
Q 017640          337 LSTIGMQKIHAYEVKWIICSIIVIQERHN  365 (368)
Q Consensus       337 ~~~~g~~~i~~~~~~l~~~l~~~l~~~~g  365 (368)
                      +++  +....++..+.+..+.++|.+++.
T Consensus       250 l~T--l~~R~~~~~~nA~~lA~~L~~hp~  276 (386)
T PF01053_consen  250 LRT--LPLRMERQNENAEALAEFLEEHPK  276 (386)
T ss_dssp             HTT--HHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred             CCc--HHHHHHHHHHHHHHHHHHHHhCCC
Confidence            222  455556777888888888888765

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.82  E-value=1.8e-18  Score=164.63  Aligned_cols=255  Identities=16%  Similarity=0.157  Sum_probs=167.7

Q ss_pred             CeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHH
Q 017640           67 KLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE  140 (368)
Q Consensus        67 ~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~  140 (368)
                      +..|+|..+      .|+.+|.+.+++.+.+........   ..    ..+...++.+.+++..+.   +.+++++|+++
T Consensus        30 G~~~lD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~---~~----~~~~~~~la~~l~~~~~~---~~v~~~~sGse   99 (389)
T PRK01278         30 GERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWHVSN---LY----RIPEQERLAERLVENSFA---DKVFFTNSGAE   99 (389)
T ss_pred             CCEEEECCccHhhccCCCCCHHHHHHHHHHHHhcCcccc---cc----CChHHHHHHHHHHhhCCC---CEEEEcCCcHH
Confidence            445677543      567889999999999876322211   01    123445788888887743   38999999999


Q ss_pred             HHHHHHHHccCCCCCCCC----EEEEcCCCCcccHHHHHHHHHHcCCEEEEE----eCCCCC----CCCHHHHHHhcccC
Q 017640          141 AINLVAYSWGLSNLKSGD----EVILTVAEHHSAIVPWQLVAQKTGANLKFL----NLNDDE----SPDLDKLKEMLSRK  208 (368)
Q Consensus       141 a~~~~~~~~~~~~~~~gd----~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v----~~~~~~----~~d~~~l~~~l~~~  208 (368)
                      |+..+++.++.....+||    +|++.++.||+........    +......    +..++.    ..|++.+++.++++
T Consensus       100 A~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~  175 (389)
T PRK01278        100 AVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAA----GGQEKYLEGFGPLVPGFDQVPFGDIEALKAAITPN  175 (389)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhc----cCChhhcccCCCCCCCceEeCCCCHHHHHHhhCCC
Confidence            999998876322234555    8999999999876544332    2111111    111121    14899999999889


Q ss_pred             ceEEEEccccccccc-ccC---HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEEecCcCcCCCCc--c
Q 017640          209 TKLVVIHHISNMLAS-ILP---IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGPTG--I  277 (368)
Q Consensus       209 ~~~v~~~~~~n~tG~-~~~---l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~g~~G--~  277 (368)
                      +++|+++.+++++|. .+|   +++|.++|++||+++|+|++|. ++..    ..+.....+|+  .+++|.++ +|  +
T Consensus       176 ~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi--~t~sK~l~-~G~~i  252 (389)
T PRK01278        176 TAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDI--MAVAKGIG-GGFPL  252 (389)
T ss_pred             eEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCCCE--EEEehhcc-CCcce
Confidence            999999999999994 444   8999999999999999999988 3221    11122334665  46779877 34  8


Q ss_pred             eEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 017640          278 GFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSI  357 (368)
Q Consensus       278 G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~  357 (368)
                      |++++++++++.+.....+.                     ..+.+....+++.++++.+++.   .+.++.+++.+++.
T Consensus       253 g~~~~~~~~~~~~~~~~~~~---------------------t~~~~~~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~  308 (389)
T PRK01278        253 GACLATEEAAKGMTPGTHGS---------------------TYGGNPLAMAVGNAVLDVILAP---GFLDNVQRMGLYLK  308 (389)
T ss_pred             EEEEEcHHHHhccCCCCCCC---------------------CCCccHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHH
Confidence            99999998877665432211                     1145666777777888877553   23344555555555


Q ss_pred             HHHHh
Q 017640          358 IVIQE  362 (368)
Q Consensus       358 ~~l~~  362 (368)
                      +.+++
T Consensus       309 ~~l~~  313 (389)
T PRK01278        309 QKLEG  313 (389)
T ss_pred             HHHHH
Confidence            54443

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.82  E-value=2.9e-18  Score=163.88  Aligned_cols=247  Identities=13%  Similarity=0.176  Sum_probs=172.2

Q ss_pred             CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCC---
Q 017640           76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLS---  152 (368)
Q Consensus        76 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~---  152 (368)
                      .|...+.+.+++.+.++.+....   ...    ..+...++.+.++++++.+   .+++++|+++|+..++..+...   
T Consensus        55 ~Gh~~~~i~~a~~~~~~~~~~~~---~~~----~~~~~~~l~~~l~~~~~~~---~~~~~~SGs~A~e~al~~a~~~~~~  124 (401)
T PRK00854         55 QGHCHPKILAAMVEQAGRLTLTS---RAF----RNDQLAPLYEELAALTGSH---KVLPMNSGAEAVETAIKAVRKWGYE  124 (401)
T ss_pred             CCCCCHHHHHHHHHHHhhccccc---ccc----CCHHHHHHHHHHHhhCCCC---EEEEeCCcHHHHHHHHHHHHHHHHh
Confidence            44568999999999988753211   101    1345667999999998853   7899999999999999887321   


Q ss_pred             --CCCCC-CEEEEcCCCCcccHHHHHHHHH---------HcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccc
Q 017640          153 --NLKSG-DEVILTVAEHHSAIVPWQLVAQ---------KTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNM  220 (368)
Q Consensus       153 --~~~~g-d~vl~~~~~~~s~~~~~~~~~~---------~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~  220 (368)
                        ...+| ++|++.+..|++.......+..         .....+..++..     |++.|++++.+++++|++++++||
T Consensus       125 ~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~i~~~~~aii~e~~~~~  199 (401)
T PRK00854        125 VKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPFG-----DAEALEAAITPNTVAFLVEPIQGE  199 (401)
T ss_pred             ccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCCC-----CHHHHHHHhCCCeEEEEEccccCC
Confidence              11223 6888888888875433322110         001233444433     899999999889999999999999


Q ss_pred             cccccC----HHHHHHHHHhcCCEEEEecCCc-CCccc--c--cCCCCCccEEEecCcCcCCCCc--ceEEEEccccccc
Q 017640          221 LASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV--V--DVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSA  289 (368)
Q Consensus       221 tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~~--~--~~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~  289 (368)
                      +|.+.|    +++|.++|++||+++|+|++|+ +|...  +  +.....+|+++.|  |.++...  +|++++++++++.
T Consensus       200 ~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~~~D~~~~~--K~l~gg~~~ig~v~~~~~~~~~  277 (401)
T PRK00854        200 AGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIEADVTLIG--KALSGGFYPVSAVLSNSEVLGV  277 (401)
T ss_pred             CCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCCCCCEEEec--ccccCCccCeEEEEEcHHHHhc
Confidence            999998    9999999999999999999998 55432  1  1222357888764  9765433  8999999998877


Q ss_pred             CCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          290 MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       290 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +.+...+.                  .+   ..+....+++.++++.+.+.+   +.++.+++.+++.+.|++.
T Consensus       278 l~~~~~~~------------------t~---~~~~~~~aa~~a~L~~l~~~~---~~~~~~~~~~~l~~~L~~~  327 (401)
T PRK00854        278 LKPGQHGS------------------TF---GGNPLACAVARAALKVLTEEG---MIENAAEMGAYFLEGLRSI  327 (401)
T ss_pred             ccCCCCCC------------------CC---CcCHHHHHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHhh
Confidence            65432111                  11   246667777888888776532   4577777888888877764

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.82  E-value=3e-18  Score=163.39  Aligned_cols=257  Identities=15%  Similarity=0.167  Sum_probs=176.2

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..      ..|+..|.+.+++.+.++.+..... .  .    ..+...++.++++++.+.   +.++|+++++
T Consensus        38 ~G~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~-~--~----~~~~~~~l~~~l~~~~~~---~~~~~~~SGs  107 (396)
T PRK04073         38 EGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLTSR-A--F----HSDQLGPWYEKVAKLTGK---DMVLPMNTGA  107 (396)
T ss_pred             CCCEEEEcCCCHHhccCCCCCHHHHHHHHHHHhhcccccc-c--c----CCHHHHHHHHHHHhcCCC---CeEEEcCChH
Confidence            344677763      3567899999999999886532111 1  1    123445788888888764   3889999999


Q ss_pred             HHHHHHHHHccCC-----CC-CCCCEEEEcCCCCcccHHHHHHHHHHcCC---------EEEEEeCCCCCCCCHHHHHHh
Q 017640          140 EAINLVAYSWGLS-----NL-KSGDEVILTVAEHHSAIVPWQLVAQKTGA---------NLKFLNLNDDESPDLDKLKEM  204 (368)
Q Consensus       140 ~a~~~~~~~~~~~-----~~-~~gd~vl~~~~~~~s~~~~~~~~~~~~g~---------~v~~v~~~~~~~~d~~~l~~~  204 (368)
                      +|+..++......     .. ..+++|+..+..||+.......+....+.         .+..++.+     |++.+++.
T Consensus       108 eA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~  182 (396)
T PRK04073        108 EAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPYG-----DLEALKAA  182 (396)
T ss_pred             HHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCCC-----CHHHHHHh
Confidence            9999999876321     01 23367888888888765433332211000         12233332     78999999


Q ss_pred             cccCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEEecCcCcCCCC
Q 017640          205 LSRKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGPT  275 (368)
Q Consensus       205 l~~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~g~~  275 (368)
                      +++++++|+++.++||+|.+.|    +++|.++|++||+++|+|++|. +|..    ..+.....+|+++.  +|.+|.+
T Consensus       183 i~~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~pdi~~~--sK~lg~g  260 (396)
T PRK04073        183 ITPNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVTPDMYIL--GKALGGG  260 (396)
T ss_pred             cccCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHHhhhcCCCCCEEEe--cccccCC
Confidence            9888999999999999999988    8899999999999999999988 4321    12333345787764  6988876


Q ss_pred             c--ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Q 017640          276 G--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWI  353 (368)
Q Consensus       276 G--~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~  353 (368)
                      |  +|++++++++++.+.+...+.                  .+   +.+....+++.++++.+.+.   .+.++..++.
T Consensus       261 g~~ig~~~~~~~i~~~~~~~~~~~------------------t~---~~~~~~~aaa~aaL~~~~~~---~l~~~~~~~~  316 (396)
T PRK04073        261 VFPISCVAANRDILGVFTPGSHGS------------------TF---GGNPLACAVSIAALEVLEEE---KLPERSLELG  316 (396)
T ss_pred             CCcceEEEEcHHHHhhhcCCCCCC------------------CC---CCCHHHHHHHHHHHHHHHhc---CHHHHHHHHH
Confidence            5  899999999887765322110                  11   34556677777888877653   3456777778


Q ss_pred             HHHHHHHHhh
Q 017640          354 ICSIIVIQER  363 (368)
Q Consensus       354 ~~l~~~l~~~  363 (368)
                      +++.+.|+++
T Consensus       317 ~~l~~~L~~l  326 (396)
T PRK04073        317 EYFKEQLKEI  326 (396)
T ss_pred             HHHHHHHHhh
Confidence            8888888764

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.82  E-value=2.8e-18  Score=162.74  Aligned_cols=226  Identities=14%  Similarity=0.128  Sum_probs=159.0

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH-HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEE
Q 017640          109 ATDEYELARKKVAAFINASDSGEIVFTKNAT-EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKF  187 (368)
Q Consensus       109 ~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t-~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~  187 (368)
                      ...+.+.+++.+++++|.+.....++++|+| .++.+++.+++.. -.+||+|+++...|.++..+    +...|+++++
T Consensus       103 ~~~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~-~~~gd~VI~p~~th~S~~kA----i~~~G~~pv~  177 (444)
T TIGR03531       103 LYKLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHK-RPKAKYVIWPRIDQKSCIKA----ISTAGFEPRV  177 (444)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCc-CCCCCEEEEECcChHHHHHH----HHHcCCeEEE
Confidence            3566778999999999998544678889999 6888888776310 11589999999988886544    4556999999


Q ss_pred             EeC--C-CCCCCCHHHHHHhccc---CceEEEEccc-ccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccc-cC--C
Q 017640          188 LNL--N-DDESPDLDKLKEMLSR---KTKLVVIHHI-SNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVV-DV--Q  257 (368)
Q Consensus       188 v~~--~-~~~~~d~~~l~~~l~~---~~~~v~~~~~-~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~-~~--~  257 (368)
                      ++.  + +++.+|+++|+++|++   +..++++..+ ++.+|...|+++|+++|++||+++|+|++|+.+.... ..  .
T Consensus       178 Vd~~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~~~~  257 (444)
T TIGR03531       178 IETVLDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYMELINK  257 (444)
T ss_pred             eeeeecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhhhhhhc
Confidence            995  3 4588999999999986   3445444444 3455678899999999999999999999999755321 11  1


Q ss_pred             --CC-CccEEEecCcCcCCC-CcceEEEE-cccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 017640          258 --GL-DADFLVASSHKMCGP-TGIGFLFG-KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGA  332 (368)
Q Consensus       258 --~~-~~d~~~~s~~K~~g~-~G~G~l~~-~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~  332 (368)
                        .. ..|+++.|+||++.. .++|++++ ++++++.+.....+                   +    ..+...+.+...
T Consensus       258 g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~~~i~~~y~g-------------------~----~~~s~~~~~~~~  314 (444)
T TIGR03531       258 AIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFIQEISKSYPG-------------------R----ASASPSLDVLIT  314 (444)
T ss_pred             cccccCCCeEEEeCccCCCCCCCEEEEEECCHHHHHHHHHhccC-------------------C----CCChHHHHHHHH
Confidence              12 369999999997764 44777777 45666655533221                   1    111222333333


Q ss_pred             HHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          333 AIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       333 al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      ++ .+...+++.+.++..++++++.+.|.++
T Consensus       315 ll-~~G~~g~~~li~~~~~~a~~l~~~L~~l  344 (444)
T TIGR03531       315 LL-SLGSKGYLELLKERKEMYKYLKELLQKL  344 (444)
T ss_pred             HH-HhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33 3333478888888999999999988765

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=99.82  E-value=4.5e-19  Score=159.24  Aligned_cols=238  Identities=18%  Similarity=0.172  Sum_probs=161.6

Q ss_pred             CCCccchhhhhc-CCCCcccccccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCC--CCc-chhhHHHHHHHHHH
Q 017640           41 STDSVSLGHITR-PDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVH--RGI-HFLSAKATDEYELA  116 (368)
Q Consensus        41 ~~~~~~~~~~~r-~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~  116 (368)
                      .+.+..|.-+.+ +.-|+... .+ ..++|.++-+.+-.+-+-+...+.+.-........  ... ....+.-.+.+..+
T Consensus        49 ~e~S~yf~g~~~y~~npy~~~-~N-p~GiIQmGlaENqlc~DL~~~wl~k~~~~~~~~~eg~~~f~~la~fqdy~Gl~~f  126 (471)
T KOG0256|consen   49 GEDSSYFYGWKAYEKNPYDPI-KN-PLGIIQMGLAENQLCFDLIESWLSKNPEASNCTREGQSSFDELAMFQDYHGLPSF  126 (471)
T ss_pred             cccchHHHHHHhcccCCCCCC-CC-chHHHHhhhhhhHHHHHHHHHHHHhChhhhhcccccccchhhHhhcccccCchHH
Confidence            334455666655 33334332 22 26788888877665544444444431111100000  000 00011112345578


Q ss_pred             HHHHHHHcCC----C---CCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          117 RKKVAAFINA----S---DSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       117 r~~la~~~~~----~---~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      |+++|+++..    +   +++.+++++|+|.+++.++..+    .+|||..+++.|.|++....   +.=+.|.++++|.
T Consensus       127 rqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcL----adpgdafLvPtPyY~gfdrd---l~~rTgveivpv~  199 (471)
T KOG0256|consen  127 RQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCL----ADPGDAFLVPTPYYPGFDRD---LRWRTGVEIVPVH  199 (471)
T ss_pred             HHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHh----cCCCceeeecCCCCCccccc---ceeccCceEEEEE
Confidence            8888887742    1   3459999999999999999887    89999999999999996533   3335689999998


Q ss_pred             CCC--CCCCCHHHHHHhccc------CceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCccc-----
Q 017640          190 LND--DESPDLDKLKEMLSR------KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV-----  253 (368)
Q Consensus       190 ~~~--~~~~d~~~l~~~l~~------~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~~-----  253 (368)
                      +..  ++++++++||+++.+      +.+.|++++|+||.|.+++   +..+..+|.++++++|+||+|+.....     
T Consensus       200 c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~  279 (471)
T KOG0256|consen  200 CSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFR  279 (471)
T ss_pred             eecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCccCce
Confidence            873  478999999998854      5799999999999999999   566777788999999999999854321     


Q ss_pred             -c-c----CC-CCCccEEEecCcCcCCCCc--ceEEEEccccc
Q 017640          254 -V-D----VQ-GLDADFLVASSHKMCGPTG--IGFLFGKSDLL  287 (368)
Q Consensus       254 -~-~----~~-~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li  287 (368)
                       + +    .+ ..+...++.|+||-||.+|  .|+++..++-+
T Consensus       280 Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~V  322 (471)
T KOG0256|consen  280 SVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDV  322 (471)
T ss_pred             EHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecChHH
Confidence             0 1    11 2345678999999999999  99999876543

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.81  E-value=3.3e-18  Score=162.35  Aligned_cols=246  Identities=17%  Similarity=0.145  Sum_probs=168.0

Q ss_pred             CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCC
Q 017640           76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLK  155 (368)
Q Consensus        76 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~  155 (368)
                      .|+.++.+.+++.+.+........  .     ...+...++++.+++++|.+   ++++++|+++++..+++.++. ...
T Consensus        41 lG~~~p~v~~a~~~~~~~~~~~~~--~-----~~~~~~~~l~~~la~~~g~~---~~~~~~sg~~a~~~a~~~~~~-~~~  109 (379)
T TIGR00707        41 LGHAHPKLVEALKEQLEKLVHVSN--L-----YYTEPQEELAEKLVEHSGAD---RVFFCNSGAEANEAALKLARK-YTG  109 (379)
T ss_pred             CCCCCHHHHHHHHHHHhhcccccc--c-----cCCHHHHHHHHHHHhhCCCC---EEEEeCCcHHHHHHHHHHHHH-Hhh
Confidence            446678999999998876421110  0     12355678999999999874   899999999999999886521 012


Q ss_pred             ----CCCEEEEcCCCCcccHHHHHHHHHHcCCEEE----EEeCCCCCCC----CHHHHHHhcccCceEEEEccccccccc
Q 017640          156 ----SGDEVILTVAEHHSAIVPWQLVAQKTGANLK----FLNLNDDESP----DLDKLKEMLSRKTKLVVIHHISNMLAS  223 (368)
Q Consensus       156 ----~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~----~v~~~~~~~~----d~~~l~~~l~~~~~~v~~~~~~n~tG~  223 (368)
                          +|++|++.++.|++........    +....    ..+...+...    |++.+++.+++++++|+++++++++|.
T Consensus       110 ~~~~~~~~vi~~~~~yh~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~p~~~~~g~  185 (379)
T TIGR00707       110 DKGKEKKKIIAFENSFHGRTMGALSA----TGQPKYQKGFEPLVPGFSYAPYNDIESLKKAIDDETAAVIVEPIQGEGGV  185 (379)
T ss_pred             ccCCCCCeEEEECCCcCCccHHHHHh----cCChhhhccCCCCCCCceeeCCCCHHHHHHHhhhCeeEEEEEccccCCCC
Confidence                3799999999988754332222    22111    1222222111    899999999888999999888888886


Q ss_pred             c-cC---HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEEecCcCcCCCCc--ceEEEEcccccccCCC
Q 017640          224 I-LP---IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPP  292 (368)
Q Consensus       224 ~-~~---l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~~  292 (368)
                      . .+   +++|.++|++||+++++|++|+ ++..    +.+.....+|++  +++|.++ +|  +|++++++++++.+.+
T Consensus       186 ~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~~~d~~--t~sK~~~-~G~riG~~~~~~~~~~~~~~  262 (379)
T TIGR00707       186 NPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEPDII--TLAKGLG-GGVPIGATLAKEEVAEAFTP  262 (379)
T ss_pred             ccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCCCCCEE--EEccccc-CCcccEEEEEcHHHHhhhcC
Confidence            5 34   7899999999999999999987 3321    111222345655  5789888 45  9999999998887765


Q ss_pred             cccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          293 FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       293 ~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      ...+                  ..+   +.+...+.++.++++.+..   ..+.++.+++.+++.+.+.+.
T Consensus       263 ~~~~------------------~~~---~~~~~~~~aa~aaL~~~~~---~~~~~~~~~~~~~~~~~l~~~  309 (379)
T TIGR00707       263 GDHG------------------STF---GGNPLACAAALAVLEVIEK---ERLLENVKEKGDYFKERLEEL  309 (379)
T ss_pred             CCCC------------------CCC---CCCHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHH
Confidence            3211                  011   3566778888888887654   345677777777777777654

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.81  E-value=1.7e-18  Score=164.63  Aligned_cols=219  Identities=16%  Similarity=0.091  Sum_probs=154.8

Q ss_pred             HHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC
Q 017640          113 YELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND  192 (368)
Q Consensus       113 ~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~  192 (368)
                      ..++++++++++|.+   .+++|+|+++|+..++.++    ++|||+| ++++.|.+.    .......|++++.+++++
T Consensus        55 ~~~Leeaia~~~g~~---~vv~t~~Gt~Al~la~~al----~~pGD~V-~~~~~f~~~----~~~i~~~Ga~pv~v~i~~  122 (431)
T cd00617          55 FYDLEDAVQDLFGFK---HIIPTHQGRGAENILFSIL----LKPGRTV-PSNMHFDTT----RGHIEANGAVPVDLVIDE  122 (431)
T ss_pred             HHHHHHHHHHHHCCC---eEEEcCCHHHHHHHHHHHh----CCCCCEE-ccCCcccch----HHHHHhCCCEeEEEeccc
Confidence            458999999999986   7899999999999999988    8999987 577755553    334556799999999873


Q ss_pred             C----------CCCCHHHHHHhcccC----ceEEEEccccccc-ccccC---HHHHHHHHHhcCCEEEEecCCcCC----
Q 017640          193 D----------ESPDLDKLKEMLSRK----TKLVVIHHISNML-ASILP---IEEIVHWSHDVGAKVLVDACQSVP----  250 (368)
Q Consensus       193 ~----------~~~d~~~l~~~l~~~----~~~v~~~~~~n~t-G~~~~---l~~i~~l~~~~g~~li~D~a~~~~----  250 (368)
                      .          |.+|++.|+++++++    +++|+++.++|++ |..++   +++|.++|++||++||.|+++..+    
T Consensus       123 ~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~  202 (431)
T cd00617         123 AHDAQELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYF  202 (431)
T ss_pred             ccccccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhh
Confidence            2          459999999999865    7899999999998 89987   567899999999999999997643    


Q ss_pred             -------cccccCC------CCCccEEEecCcCcCCCCcceEEEEcc-cccccCCCcccCCcceeecccCCCCCCCCCCC
Q 017640          251 -------HMVVDVQ------GLDADFLVASSHKMCGPTGIGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSR  316 (368)
Q Consensus       251 -------~~~~~~~------~~~~d~~~~s~~K~~g~~G~G~l~~~~-~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~  316 (368)
                             .....+.      ....|.++.|++|.++.+-.|+++.++ +++++++......                 ..
T Consensus       203 i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~GG~i~~~d~~l~~~~~~~~~~~-----------------~~  265 (431)
T cd00617         203 IKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNIGGFLALRDDELYEEARQRVVLY-----------------EG  265 (431)
T ss_pred             hhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCccceEEEeCcHHHHHHHHHhcccc-----------------CC
Confidence                   1111111      114788999999955543248999987 5877765321100                 11


Q ss_pred             C-CCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          317 F-EAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       317 ~-~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      + ..|..+.-.+.+++.+++...+  .+.+.++.. .++++.+.|.+.
T Consensus       266 ~~~~gG~~~r~~~A~A~gL~e~~~--~~~l~~~~~-~r~~l~~~L~~~  310 (431)
T cd00617         266 FVTYGGMAGRDMEALAQGLREAVE--EDYLRHRVE-QVRYLGDRLDEA  310 (431)
T ss_pred             ccccccccHHHHHHHHHHHHhccc--HHHHHHHHH-HHHHHHHHHHHC
Confidence            1 1234455555566556653221  234444444 447788888765

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=99.81  E-value=1.4e-17  Score=163.24  Aligned_cols=276  Identities=16%  Similarity=0.092  Sum_probs=195.9

Q ss_pred             EeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHc
Q 017640           70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSW  149 (368)
Q Consensus        70 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~  149 (368)
                      |+.|....+.++.+...+...+  +  |++...+..++....+.+++-+.+++++|.+.. ..+||+|+|+|+..++...
T Consensus        86 y~ghm~~~~~~paila~~~a~~--~--N~n~~~~e~SP~~t~lE~~vi~~la~l~G~~~~-~G~~TsGGT~ANl~aL~~A  160 (608)
T TIGR03811        86 YWGHMNSETLMPAILAYNYAML--W--NGNNVAYESSPATSQMEEEVGKEFATLMGYKNG-WGHIVADGSLANLEGLWYA  160 (608)
T ss_pred             eEEECcCCCCHHHHHHHHHHHH--h--CCCCCccccCchHHHHHHHHHHHHHHHhCCCCC-CeEEeCChHHHHHHHHHHH
Confidence            7888777777777766654333  2  333345556777888999999999999999864 6789999999999988775


Q ss_pred             cCCC-----CCC-------------------------------------------C------CEEEEcCCCCcccHHHHH
Q 017640          150 GLSN-----LKS-------------------------------------------G------DEVILTVAEHHSAIVPWQ  175 (368)
Q Consensus       150 ~~~~-----~~~-------------------------------------------g------d~vl~~~~~~~s~~~~~~  175 (368)
                      +...     ++.                                           |      -+++++...|+|    +.
T Consensus       161 R~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS----~~  236 (608)
T TIGR03811       161 RNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYS----WL  236 (608)
T ss_pred             HHhhhccchhhhccccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEECCCccHH----HH
Confidence            4211     000                                           0      057777777888    55


Q ss_pred             HHHHHcCC---EEEEEeCCCCCCCCHHHHHHhccc------CceEEEEcccccccccccCHHHHHHHH---HhcCC--EE
Q 017640          176 LVAQKTGA---NLKFLNLNDDESPDLDKLKEMLSR------KTKLVVIHHISNMLASILPIEEIVHWS---HDVGA--KV  241 (368)
Q Consensus       176 ~~~~~~g~---~v~~v~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~~n~tG~~~~l~~i~~l~---~~~g~--~l  241 (368)
                      +.+...|.   .++.||+++++.+|+++|+++|.+      .+-+|+.+..++.+|.+.|+++|+++|   +++|+  ++
T Consensus       237 KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~l  316 (608)
T TIGR03811       237 KAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYL  316 (608)
T ss_pred             HHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeE
Confidence            66666687   599999999999999999998864      245688889999999999999999999   67887  69


Q ss_pred             EEecCCcCCc---c--------ccc-----------C----------------CCCCccEEEecCcCc-CCCCcceEEEE
Q 017640          242 LVDACQSVPH---M--------VVD-----------V----------------QGLDADFLVASSHKM-CGPTGIGFLFG  282 (368)
Q Consensus       242 i~D~a~~~~~---~--------~~~-----------~----------------~~~~~d~~~~s~~K~-~g~~G~G~l~~  282 (368)
                      ++|+|++...   +        |++           +                .-..+|.++.++||+ |-|.++|.+++
T Consensus       317 HVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~  396 (608)
T TIGR03811       317 HVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVI  396 (608)
T ss_pred             eeeccccchhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcCcCceEEEeCcccccccCCCeEEEEE
Confidence            9999998532   1        110           0                012589999999995 66889999999


Q ss_pred             ccccccc-C---CCcccCCcceeecccCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHH--HHhCHHHHHHHHHHHHHH
Q 017640          283 KSDLLSA-M---PPFLGGGEMISDVFLDHSTFADPPSRF-EAGTPAIGEAIGLGAAIDYL--STIGMQKIHAYEVKWIIC  355 (368)
Q Consensus       283 ~~~li~~-l---~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~gt~~~~~~~a~~~al~~~--~~~g~~~i~~~~~~l~~~  355 (368)
                      |+.-+.. +   .++....+         .........+ ..|+.+-...+++..+++.+  ...|+.++.+++.+++++
T Consensus       397 Rd~~~~~~~~~~a~Yl~~~~---------~~~p~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~  467 (608)
T TIGR03811       397 QDIRMRDVISYFATYVFEKG---------ADIPALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHR  467 (608)
T ss_pred             eCHHHHHHHhcCcchhcccc---------ccCcccccccceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            8763222 1   12221100         0000001111 24454446677778888887  666899999999999999


Q ss_pred             HHHHHHhh
Q 017640          356 SIIVIQER  363 (368)
Q Consensus       356 l~~~l~~~  363 (368)
                      +.+.|.+.
T Consensus       468 ~~~~L~~~  475 (608)
T TIGR03811       468 FYDFLNNL  475 (608)
T ss_pred             HHHHHHhc
Confidence            99999874

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=99.81  E-value=1.8e-18  Score=154.71  Aligned_cols=277  Identities=17%  Similarity=0.219  Sum_probs=201.5

Q ss_pred             hcCCCCcccccccC--CCCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC
Q 017640           51 TRPDFPILHQEVYG--SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS  127 (368)
Q Consensus        51 ~r~~f~~~~~~~~~--~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~  127 (368)
                      +..+||......+.  .+-.++..+...+ .-.|.|.+++++.++...+.........|  ......++++.||++.+.+
T Consensus       155 lA~~fP~A~~~se~t~k~VtVWCSNDYLgms~Hp~V~~A~~~tl~~hG~GAGGTRNIsG--~s~~hv~LE~eLA~LHqK~  232 (570)
T KOG1360|consen  155 LAKEFPLAHRYSEATEKKVTVWCSNDYLGMSRHPEVLDAMHDTLDRHGAGAGGTRNISG--HSKHHVRLEAELADLHQKE  232 (570)
T ss_pred             hhhhccchhhccccccCceEEEecCccccccCChHHHHHHHHHHHHcCCCcCCccccCC--CCchhhhHHHHHHHHhcCc
Confidence            44677766544332  2335677776666 56899999999999987554322111111  2344457999999999987


Q ss_pred             CCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc
Q 017640          128 DSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR  207 (368)
Q Consensus       128 ~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~  207 (368)
                      .  .++|+ ++--|+...+..++  ..-||-+|+-.+.+|.|....++.    .++.-..+..+     |++.|++.|+.
T Consensus       233 a--ALlFs-SCfVANDstLftLa--k~lpgcei~SD~gNHASMI~GIrn----s~v~K~IFrHN-----D~~hL~~lL~~  298 (570)
T KOG1360|consen  233 A--ALLFS-SCFVANDSTLFTLA--KKLPGCEIFSDEGNHASMIQGIRN----SRVPKHIFRHN-----DLDHLEQLLQS  298 (570)
T ss_pred             c--eeeee-eeeeccchHHHHHH--HHCCCcEEeccccchHHHHHHhhh----cCCcceeeccC-----CHHHHHHHHHh
Confidence            4  44444 44456666665553  255888888888888887655543    36665566666     89999998864


Q ss_pred             ----CceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccc--------cCCCCCccEEEecCcCcCCCC
Q 017640          208 ----KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVV--------DVQGLDADFLVASSHKMCGPT  275 (368)
Q Consensus       208 ----~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~--------~~~~~~~d~~~~s~~K~~g~~  275 (368)
                          .+|+|.++.+++++|.+.|++||++++++||.+.++||+|+.|..-.        |--....|++++++.|.||--
T Consensus       299 ~~~svPKivAFEtVhSM~GavcpleelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGcV  378 (570)
T KOG1360|consen  299 SPKSVPKIVAFETVHSMDGAVCPLEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGCV  378 (570)
T ss_pred             CCCCCCceEEEeeeeccCCCcCCHHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhcccc
Confidence                57999999999999999999999999999999999999999765411        111135899999999999987


Q ss_pred             cceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 017640          276 GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIIC  355 (368)
Q Consensus       276 G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~  355 (368)
                      | |++....++++.++.+..|.-                  | ..+.+..-+.++..++++++...-..++...++...|
T Consensus       379 G-GYIAat~~LvDmiRSyAaGFI------------------F-TTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~  438 (570)
T KOG1360|consen  379 G-GYIAATRKLVDMIRSYAAGFI------------------F-TTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKY  438 (570)
T ss_pred             c-ceehhhhhHHHHHHHhcCceE------------------E-ecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            6 999999999999998876532                  2 2255556677888889988876456777777778888


Q ss_pred             HHHHHHhh
Q 017640          356 SIIVIQER  363 (368)
Q Consensus       356 l~~~l~~~  363 (368)
                      +++.|.++
T Consensus       439 ~kq~l~~~  446 (570)
T KOG1360|consen  439 VKQLLMEL  446 (570)
T ss_pred             HHHHHHHc
Confidence            88888765

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.80  E-value=4.3e-18  Score=171.21  Aligned_cols=245  Identities=16%  Similarity=0.131  Sum_probs=173.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeC-CHHHHHHHHHHHccCCCC----CCCCEEEEcCCCCcccHHHHHHHH
Q 017640          104 FLSAKATDEYELARKKVAAFINASDSGEIVFTK-NATEAINLVAYSWGLSNL----KSGDEVILTVAEHHSAIVPWQLVA  178 (368)
Q Consensus       104 ~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~-g~t~a~~~~~~~~~~~~~----~~gd~vl~~~~~~~s~~~~~~~~~  178 (368)
                      ..+.+..+.+.++++.+++++|.+   .+.+.+ +++.+...++++++.++.    ..+++|+++...|+++...    +
T Consensus       536 e~sQG~lq~i~elq~~l~eLtGmd---~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpas----a  608 (954)
T PRK12566        536 EQAEGYRAMIDELEAWLCAITGFD---AICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPAS----A  608 (954)
T ss_pred             hhhcCHHHHHHHHHHHHHHHHCCC---eEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHH----H
Confidence            345667899999999999999997   345554 555566566665532122    2346889999999887533    4


Q ss_pred             HHcCCEEEEEeCCCCCCCCHHHHHHhcc---cCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCccccc
Q 017640          179 QKTGANLKFLNLNDDESPDLDKLKEMLS---RKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD  255 (368)
Q Consensus       179 ~~~g~~v~~v~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~  255 (368)
                      ...|.+++.++.+++|.+|+++|+++++   +++++|+++++++..+...|+++|+++||++|+++++|+++..+...++
T Consensus       609 ~~~GieVv~Vp~D~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l~  688 (954)
T PRK12566        609 QMAGMRVVIVECDPDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGLA  688 (954)
T ss_pred             HHCCCEEEEeccCCCCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccCCC
Confidence            5669999999999899999999999997   5788899999988877777799999999999999999999998777775


Q ss_pred             -CCCCCccEEEecCcCcCC-CCcceEEEEcc-cccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCC---CHHHHHH
Q 017640          256 -VQGLDADFLVASSHKMCG-PTGIGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTP---AIGEAIG  329 (368)
Q Consensus       256 -~~~~~~d~~~~s~~K~~g-~~G~G~l~~~~-~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~---~~~~~~a  329 (368)
                       ..++++|++++++||+|+ |.|.|...+.+ ...+.+.|+..++..+..   +.     ...+  .|+.   ++.+...
T Consensus       689 ~Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~---~G-----~~~r--~ga~S~~~~gsa~~  758 (954)
T PRK12566        689 RPADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPV---EG-----PDPN--NGAVSAAPWGSASI  758 (954)
T ss_pred             ChhhcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCC---CC-----CCCC--CCceeecccchHHH
Confidence             467899999999999664 55655544444 444444455444321100   00     0001  2333   3333333


Q ss_pred             HHHHHHHHHHhCHHHHHHH--HHHHHHHHHHHHHhhcC
Q 017640          330 LGAAIDYLSTIGMQKIHAY--EVKWIICSIIVIQERHN  365 (368)
Q Consensus       330 ~~~al~~~~~~g~~~i~~~--~~~l~~~l~~~l~~~~g  365 (368)
                      +..++.++...|.+..+..  ...+++|+.++|.+..+
T Consensus       759 l~~A~~Yi~~lG~eLk~aa~~ailnAnYla~rL~~~~~  796 (954)
T PRK12566        759 LPISWMYIAMMGPQLADASEVAILSANYLANQLGGAFP  796 (954)
T ss_pred             HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHhHhhCC
Confidence            6677778888787633333  36799999999987543

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.79  E-value=1.7e-18  Score=154.81  Aligned_cols=258  Identities=13%  Similarity=0.079  Sum_probs=182.8

Q ss_pred             EeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHc
Q 017640           70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSW  149 (368)
Q Consensus        70 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~  149 (368)
                      +|.......+.+.+.+++.+.-.         .....|+..+...++++.+++++|..   .++|++++|+++.+++.+.
T Consensus         3 ~f~SDn~~g~~~~m~eam~~a~~---------~~~~~YG~D~~~~~~e~~~ae~~g~~---a~~Fv~sGT~aN~lal~~~   70 (342)
T COG2008           3 DFRSDNVAGPTPEMREALAAANA---------VGDDVYGEDPTTNALEQRIAELFGKE---AALFVPSGTQANQLALAAH   70 (342)
T ss_pred             ccccCccCCCCHHHHHHHHhccc---------cCCCCCCCCHHHHHHHHHHHHHhCCc---eEEEecCccHHHHHHHHHh
Confidence            45555566778888888876632         11223445677889999999999993   8999999999999999998


Q ss_pred             cCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc------CceEEEEccccccccc
Q 017640          150 GLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR------KTKLVVIHHISNMLAS  223 (368)
Q Consensus       150 ~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~~n~tG~  223 (368)
                          ++||+.|++....|-.....-. ..-..++....+...++|.++++++++.+.+      .+..+++.+.+|..|.
T Consensus        71 ----~~~~~~vi~~~~aHi~~~E~Ga-~~~~~~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~Gt  145 (342)
T COG2008          71 ----CQPGESVICHETAHIYTDECGA-PEFFGGGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGT  145 (342)
T ss_pred             ----cCCCCeEEEeccccceecccCc-HHHHcCCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCce
Confidence                8999999999998887654322 1122344454555457899999999998864      2466666666678899


Q ss_pred             ccC---HHHHHHHHHhcCCEEEEecCCcC---CcccccCC--CCCccEEEecCcCcCCCCcceEEEEcccccccCCCc--
Q 017640          224 ILP---IEEIVHWSHDVGAKVLVDACQSV---PHMVVDVQ--GLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPF--  293 (368)
Q Consensus       224 ~~~---l~~i~~l~~~~g~~li~D~a~~~---~~~~~~~~--~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~--  293 (368)
                      ++|   +++|.++||+||+.|++|++--.   -....+..  ..++|.++.+++|..+.++.++++.+.+++++.+.+  
T Consensus       146 Vy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~~~gAiv~gn~~~~~~a~~~rK  225 (342)
T COG2008         146 VYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGAPVGAIVFGNRDFAKRARRWRK  225 (342)
T ss_pred             ecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCHHHHHhhCCEEEEecccCCcceeeeEEEcCHHHHHHHHHHHH
Confidence            999   66888899999999999999321   11111221  237999999999988888779999999998876532  


Q ss_pred             ccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 017640          294 LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTTL  368 (368)
Q Consensus       294 ~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t~  368 (368)
                      ..|++..                       -..++ .+..+-++++.-......|.+++++++.+.+.+.+|.++
T Consensus       226 ~~Ggl~~-----------------------k~r~l-aA~~~~~l~~~~~~~~~~Han~mA~~La~~~~~~~G~~~  276 (342)
T COG2008         226 RAGGLMR-----------------------KARFL-AAQGLYALEDDVWRLAADHANAMAARLAEGLEAKPGVKL  276 (342)
T ss_pred             HhcccHh-----------------------hhhHH-HHHHHHHHhccHHHHHHHHHHHHHHHHHHhhhhcCCcee
Confidence            2333221                       11112 122233334323566778888999999999998888653

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.79  E-value=1.7e-17  Score=159.04  Aligned_cols=164  Identities=21%  Similarity=0.257  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccC-----CCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEE
Q 017640          113 YELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGL-----SNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKF  187 (368)
Q Consensus       113 ~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~-----~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~  187 (368)
                      ..++++.+++++|.+   .+++++|+|+|+..++.++..     ..+++||+|++++++|.++...+.    ..|++++.
T Consensus        65 ~~~fe~~lA~~~g~~---~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~----~~G~~pv~  137 (438)
T PRK15407         65 NDAFEKKLAEFLGVR---YALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPII----QNGLVPVF  137 (438)
T ss_pred             HHHHHHHHHHHhCCC---eEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHH----HcCCEEEE
Confidence            558999999999985   688999999999999987521     136899999999999988665443    45999999


Q ss_pred             EeCC-CCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCccccc--CCCCCccEE
Q 017640          188 LNLN-DDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD--VQGLDADFL  264 (368)
Q Consensus       188 v~~~-~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~--~~~~~~d~~  264 (368)
                      ++++ .++.+|++.+++++++++++|+++++   +|...++++|.++|++||++||+|++|+.|...-+  ...++ |+.
T Consensus       138 vdvd~~~~~id~~~le~~i~~~tkaVi~~~~---~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~~g-d~~  213 (438)
T PRK15407        138 VDVELPTYNIDASLLEAAVSPKTKAIMIAHT---LGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGTFG-DIA  213 (438)
T ss_pred             EecCCCcCCcCHHHHHHHcCcCCeEEEEeCC---CCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCeeeeccC-ceE
Confidence            9987 46889999999999999999999985   78888999999999999999999999999876322  22233 788


Q ss_pred             EecCcC--cCC-CCcceEEEEcccccc
Q 017640          265 VASSHK--MCG-PTGIGFLFGKSDLLS  288 (368)
Q Consensus       265 ~~s~~K--~~g-~~G~G~l~~~~~li~  288 (368)
                      ++|++.  .+. +. .|+++++++.+.
T Consensus       214 ~fSf~~~k~~~~ge-GG~l~t~d~~l~  239 (438)
T PRK15407        214 TLSFYPAHHITMGE-GGAVFTNDPLLK  239 (438)
T ss_pred             EEeCCCCCCccccC-ceEEEECCHHHH
Confidence            888764  343 44 499998876543

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.79  E-value=3.9e-17  Score=156.07  Aligned_cols=255  Identities=13%  Similarity=0.152  Sum_probs=170.0

Q ss_pred             eEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHH
Q 017640           68 LVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEA  141 (368)
Q Consensus        68 ~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a  141 (368)
                      -.|+|..+      .|..+|.+.+++.+.+..+...   +...    ..+....+++.++++++.+   .++|++++++|
T Consensus        31 ~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~~~~~---~~~~----~~~~~~~~~~~l~~~~~~~---~~~~~~SGs~A  100 (400)
T PTZ00125         31 KKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLT---SRAF----YNDVLGLAEKYITDLFGYD---KVLPMNSGAEA  100 (400)
T ss_pred             CEEEEcccCHhhccCCcCCHHHHHHHHHHHHhcccc---cccc----cCHHHHHHHHHHHhCCCCC---EEEEeCCcHHH
Confidence            34666642      4457999999999988764211   1111    1346678888899888753   78999999999


Q ss_pred             HHHHHHHccCCC-----C-CCCCEEEEcCCCCcccHHHHHHHHHHcCC---------EEEEEeCCCCCCCCHHHHHHhcc
Q 017640          142 INLVAYSWGLSN-----L-KSGDEVILTVAEHHSAIVPWQLVAQKTGA---------NLKFLNLNDDESPDLDKLKEMLS  206 (368)
Q Consensus       142 ~~~~~~~~~~~~-----~-~~gd~vl~~~~~~~s~~~~~~~~~~~~g~---------~v~~v~~~~~~~~d~~~l~~~l~  206 (368)
                      +..++.......     . ..++.|+..+..|++..............         .+..++.     .|+++|++.++
T Consensus       101 ~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~  175 (400)
T PTZ00125        101 GETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDY-----NDVEALEKLLQ  175 (400)
T ss_pred             HHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCC-----CCHHHHHHHhC
Confidence            999998762100     1 23578888888888765433322110000         1122222     28999999996


Q ss_pred             -cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEEecCcCcCCCC-
Q 017640          207 -RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGPT-  275 (368)
Q Consensus       207 -~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~g~~-  275 (368)
                       +++++|+++.++|++|.+.|    +++|.++|++||+++|+|++|+ +|..    ..+.....+|++++  +|.+++. 
T Consensus       176 ~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~pd~~~~--sK~l~~g~  253 (400)
T PTZ00125        176 DPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPDIVLL--GKALSGGL  253 (400)
T ss_pred             CCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCCCCEEEE--cccccCCC
Confidence             67899999999999999998    9999999999999999999986 4321    22223345787765  5976643 


Q ss_pred             -cceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Q 017640          276 -GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWII  354 (368)
Q Consensus       276 -G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~  354 (368)
                       ++|++++++++++.+.+...+.                  .+   ..+.....++.++++.+.+.+   +.++.+++.+
T Consensus       254 ~~ig~v~~~~~~~~~~~~~~~~~------------------t~---~~~~~~~~aa~~~l~~i~~~~---~~~~~~~~~~  309 (400)
T PTZ00125        254 YPISAVLANDDVMLVIKPGEHGS------------------TY---GGNPLACAVAVEALEVLKEEK---LAENAQRLGE  309 (400)
T ss_pred             cCcEEEEEcHHHHhhccCCCCCC------------------CC---CcCHHHHHHHHHHHHHHHhcC---HHHHHHHHHH
Confidence             4899999999888766432110                  11   234456666777788877644   3455566666


Q ss_pred             HHHHHHHhh
Q 017640          355 CSIIVIQER  363 (368)
Q Consensus       355 ~l~~~l~~~  363 (368)
                      ++.+.|.+.
T Consensus       310 ~l~~~l~~l  318 (400)
T PTZ00125        310 VFRDGLKEL  318 (400)
T ss_pred             HHHHHHHHH
Confidence            666666553

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.79  E-value=3.6e-17  Score=149.23  Aligned_cols=258  Identities=16%  Similarity=0.154  Sum_probs=181.2

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|||..      ..|+.+|.+.+++++..+.+...++.   +    ..+...++.+.|++..+ .. +.|+|+||++
T Consensus        40 ~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~sn~---~----~~~~~~~la~~L~~~s~-~~-d~vff~NSGa  110 (404)
T COG4992          40 QGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVSNL---F----YNEPQAELAEKLVELSP-FA-DRVFFCNSGA  110 (404)
T ss_pred             CCCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhhcccc---c----CChHHHHHHHHHHhhCc-cc-cEEEEcCCcH
Confidence            455677753      36689999999999988876443321   1    13445578888888887 33 4999999999


Q ss_pred             HHHHHHHHHccCCCC-CCCCEEEEcCCCCcccHHHHHHHH------HHcC---CEEEEEeCCCCCCCCHHHHHHhcccCc
Q 017640          140 EAINLVAYSWGLSNL-KSGDEVILTVAEHHSAIVPWQLVA------QKTG---ANLKFLNLNDDESPDLDKLKEMLSRKT  209 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~-~~gd~vl~~~~~~~s~~~~~~~~~------~~~g---~~v~~v~~~~~~~~d~~~l~~~l~~~~  209 (368)
                      ||++.++...+++.. ..+.+|+....+||+-......+.      +..+   -.++.+|.+     |+++++++++++|
T Consensus       111 EA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfn-----Di~al~~ai~~~t  185 (404)
T COG4992         111 EANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFN-----DIEALEAAIDEDT  185 (404)
T ss_pred             HHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCC-----CHHHHHHHhccCe
Confidence            999999998754333 224589988998887432211110      0001   123444444     9999999999999


Q ss_pred             eEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEEecCcCcCC-CCcceE
Q 017640          210 KLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCG-PTGIGF  279 (368)
Q Consensus       210 ~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~g-~~G~G~  279 (368)
                      .+|+++.++...|++.|    ++++.++|++||+++|+||+|. +|..    ..+.....+|+++..  |.+| +-.+|.
T Consensus       186 aAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PDI~tla--K~LgGG~PigA  263 (404)
T COG4992         186 AAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDILTLA--KALGGGFPIGA  263 (404)
T ss_pred             EEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCCCCCEEEee--ccccCCcccee
Confidence            99999999999999988    8999999999999999999997 3332    222334568988877  9554 334899


Q ss_pred             EEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 017640          280 LFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIV  359 (368)
Q Consensus       280 l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~  359 (368)
                      ++.++...+.+.|-..|.++                     .-|..+.++..++++.+.+   +.+-++.+++.+++.+.
T Consensus       264 ~la~~~~~~~~~~G~HgSTf---------------------GGNpLacAv~~a~l~~l~~---e~ll~~v~~~g~~~~~~  319 (404)
T COG4992         264 MLATEEIASAFTPGDHGSTF---------------------GGNPLACAVALAVLEVLLE---EGLLENVREKGEYLLQR  319 (404)
T ss_pred             eEEchhhhhcCCCCcccCCC---------------------CcCHHHHHHHHHHHHHHcc---hhHHHHHHHHHHHHHHH
Confidence            99986655666666654332                     4566666777777887776   44556667777777777


Q ss_pred             HHhh
Q 017640          360 IQER  363 (368)
Q Consensus       360 l~~~  363 (368)
                      |.++
T Consensus       320 L~~l  323 (404)
T COG4992         320 LREL  323 (404)
T ss_pred             HHHH
Confidence            6654

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.79  E-value=2.8e-17  Score=156.93  Aligned_cols=246  Identities=15%  Similarity=0.130  Sum_probs=159.8

Q ss_pred             CCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCC--
Q 017640           77 SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNL--  154 (368)
Q Consensus        77 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~--  154 (368)
                      ++..+.+.+++.+.+........  .     ...+...++.+.++++.+.   +++++++|+++|+..+++.+....-  
T Consensus        54 G~~~p~v~~a~~~~~~~~~~~~~--~-----~~~~~~~~la~~l~~~~~~---~~v~~~~gg~eA~~~al~~a~~~~~~~  123 (396)
T PRK02627         54 GHCHPKLVEAIQEQAAKLIHTSN--L-----YYIEPQEELAEKLVELSGM---DKVFFCNSGAEANEAAIKLARKYGHKK  123 (396)
T ss_pred             CCCCHHHHHHHHHHHhhcccccc--c-----cCCHHHHHHHHHHHhhcCC---CEEEECCCcHHHHHHHHHHHHHHhccc
Confidence            45568999999988875421110  0     1145556788888888765   3899999999999999996521000  


Q ss_pred             -CCCCEEEEcCCCCcccHHHHHHHHHHcCCEE---EEEeCCCCC----CCCHHHHHHhcccCceEEEEccccccccc-cc
Q 017640          155 -KSGDEVILTVAEHHSAIVPWQLVAQKTGANL---KFLNLNDDE----SPDLDKLKEMLSRKTKLVVIHHISNMLAS-IL  225 (368)
Q Consensus       155 -~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v---~~v~~~~~~----~~d~~~l~~~l~~~~~~v~~~~~~n~tG~-~~  225 (368)
                       .+.++|++..+.|++........   .+...   ...+..++.    ..|++++++++.+++++|+++.++|++|. .+
T Consensus       124 ~~~~~~ii~~~~~yhg~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~vii~p~~~~~G~~~~  200 (396)
T PRK02627        124 GIEKPEIITAENSFHGRTLATLSA---TGQPKYQEGFEPLVEGFIYVPFNDIEALKAAITDKTAAVMLEPIQGEGGVNPA  200 (396)
T ss_pred             CCCCCeEEEECCCcCcccHHHHHh---cCCccccccCCCCCCCceEeCCCCHHHHHHhcCCCeEEEEEecccCCCCCccC
Confidence             11268999999988754332222   12111   111211111    12899999999888999999999999994 54


Q ss_pred             C---HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEEecCcCcCCCCc--ceEEEEcccccccCCCccc
Q 017640          226 P---IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLG  295 (368)
Q Consensus       226 ~---l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~~~~~  295 (368)
                      |   +++|.++|++||+++|+|++|+ ++..    ..+.....+|++  +++|.++ +|  +|++++++++++.+.+...
T Consensus       201 ~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~pdi~--t~sK~~~-~G~rig~~~~~~~~~~~~~~~~~  277 (396)
T PRK02627        201 DKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIEPDIM--TLAKGLG-GGVPIGAVLAKEKVADVFTPGDH  277 (396)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCCCCCEE--EEcchhh-CCcccEEEEEcHHHHhccCCCCC
Confidence            4   8999999999999999999987 4321    112222346655  5779888 45  9999999988776654221


Q ss_pred             CCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHh
Q 017640          296 GGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       296 g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~  362 (368)
                      .                     ...+.+....+++.++++.+...   .+.++.+++.+++.+.+.+
T Consensus       278 ~---------------------~t~~~~~~~~~aa~~~l~~~~~~---~~~~~~~~~~~~~~~~l~~  320 (396)
T PRK02627        278 G---------------------STFGGNPLACAAALAVIEIIEEE---GLLENAAEVGEYLRAKLRE  320 (396)
T ss_pred             C---------------------CCCCCCHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHH
Confidence            1                     11145666777777778776653   3345555555555555544

>PRK06434 cystathionine gamma-lyase; Validated

Probab=99.79  E-value=5.8e-18  Score=159.04  Aligned_cols=215  Identities=16%  Similarity=0.155  Sum_probs=155.0

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEE
Q 017640          109 ATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL  188 (368)
Q Consensus       109 ~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v  188 (368)
                      ..+..+++++.++++.|.+   ..+.+++++.|+.+++.++    +++||+|+++...|...+..+...+...|++++++
T Consensus        62 ~~P~~~~lE~~la~leg~~---~av~~sSG~aAi~~al~al----l~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fv  134 (384)
T PRK06434         62 GNPTVQAFEEKYAVLENAE---HALSFSSGMGAITSAILSL----IKKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYI  134 (384)
T ss_pred             CChhHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHH----hCCCCEEEEecCccchHHHHHHHHHHhcCcEEEEE
Confidence            3566778999999999986   4577788889999999988    89999999998888888777777778889999999


Q ss_pred             eCCCCCCCCHHHHHHhccc-CceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEec
Q 017640          189 NLNDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVAS  267 (368)
Q Consensus       189 ~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s  267 (368)
                      ++++...     ++  +++ ++++|++++++|||+.+.|+++|+++|++++  +++|++++.+...-.+ ..+.|++++|
T Consensus       135 d~~~~~~-----~~--l~~~~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~~s~~~~~pl-~~gaDivv~S  204 (384)
T PRK06434        135 DTDRLNS-----LD--FDPSNYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATFASPYNQNPL-DLGADVVIHS  204 (384)
T ss_pred             CCCChhh-----ee--ecCCCeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCCCCcccCCch-hcCCCEEEee
Confidence            9863222     22  333 6899999999999999999999999999998  5679998766541122 3579999999


Q ss_pred             CcCcCCCCc---ceEEEEcc-cccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHH
Q 017640          268 SHKMCGPTG---IGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQ  343 (368)
Q Consensus       268 ~~K~~g~~G---~G~l~~~~-~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~  343 (368)
                      .+|+++.+|   .|+++.++ ++.++++......+.                     ..+.   ..+...+.-++  -++
T Consensus       205 ~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~---------------------~~~~---~~A~l~~~gL~--tL~  258 (384)
T PRK06434        205 ATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGS---------------------NPDP---IQAYLALRGLK--TLG  258 (384)
T ss_pred             cccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCC---------------------CCCH---HHHHHHHhCCC--cHH
Confidence            999886544   67777754 443444322110000                     1111   11111222222  256


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCC
Q 017640          344 KIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       344 ~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      ...++..+++..+.++|++++.+
T Consensus       259 ~R~~r~~~~a~~~a~~L~~~p~v  281 (384)
T PRK06434        259 LRMEKHNKNGMELARFLRDSKKI  281 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCc
Confidence            66777888899999999988764

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.77  E-value=8.7e-17  Score=162.82  Aligned_cols=282  Identities=16%  Similarity=0.111  Sum_probs=209.8

Q ss_pred             EEeccCCCC-CCcHHHHHHHHHH---HHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHH
Q 017640           69 VYLDNAATS-QKPIAVLKALQNY---YEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL  144 (368)
Q Consensus        69 i~l~~~~~~-~~~~~v~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~  144 (368)
                      .|++.+.+. ..|+.+.+.+.+.   +..+  .|+  +...+++..+.+-+++..++++.|.+.. +..+..++|++.+.
T Consensus        67 ~fig~G~y~~~~p~~i~r~v~~~p~~~Tay--tPy--Q~EisQG~Le~l~e~Qt~i~eLtGm~~a-NaSl~d~atA~aEa  141 (939)
T TIGR00461        67 SYIGMGYYGTILPPVIQRNLLENPGWYTAY--TPY--QPEISQGRLEALLNFQTVVSDLTGLPVA-NASLLDEGTAAAEA  141 (939)
T ss_pred             ccCCCCcCCCcCChHHHHHHHhCchhhhcC--CCC--ChhhhhHHHHHHHHHHHHHHHHHCCChh-hhhccchhhHHHHH
Confidence            477777777 4566666465543   3333  233  2236777889999999999999999865 67888899988888


Q ss_pred             HHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccc
Q 017640          145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI  224 (368)
Q Consensus       145 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~  224 (368)
                      ++++.+. .-+++++|++++..|+.+...++..++..|.+++.++        +++|++.+  ++.++++.+| |.+|.+
T Consensus       142 ~~~a~~~-~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~--------~~~l~~~~--~~~~v~~q~P-n~~G~i  209 (939)
T TIGR00461       142 MALSFNV-SKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVD--------CSDIKKAV--DVFGCLLQYP-ATDGSI  209 (939)
T ss_pred             HHHHHHh-hcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEc--------HHHHhhcC--CEEEEEEECC-CCCeEE
Confidence            8877621 1123589999999999998888888888899998874        45676666  5677777777 568999


Q ss_pred             cCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCc-----CCCCcceEEEEcccccccCCCcccCCcc
Q 017640          225 LPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKM-----CGPTGIGFLFGKSDLLSAMPPFLGGGEM  299 (368)
Q Consensus       225 ~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~-----~g~~G~G~l~~~~~li~~l~~~~~g~~~  299 (368)
                      .++++|++++|++|.+++++.-........+..+++.|+++++.+++     ||+++.|++.+++++.+.+...+.|+..
T Consensus       210 ed~~~i~~~~h~~gal~~~~ad~~al~ll~~Pge~GaDi~vg~~q~fg~p~g~GGP~aG~~a~~~~l~r~lPgrivG~s~  289 (939)
T TIGR00461       210 LDYKQLIDALHSHKSLVSVAADLMALTLLTPPGHYGADIVLGSSQRFGVPMGYGGPHAAFFAVKDEYNRKMPGRIVGVSK  289 (939)
T ss_pred             ecHHHHHHHHHHcCCEEEEEechHHhCCcCCHHHcCCcEEeeCCCccCCCCCCCCCceeeeeecHhhHhhCCCCceeEEe
Confidence            99999999999999999997666555554566778999999988884     4566699999999999999988887653


Q ss_pred             eeec---ccCCCCCCCCCCCCCCCCCCHHHHHHHHH---H--HHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 017640          300 ISDV---FLDHSTFADPPSRFEAGTPAIGEAIGLGA---A--IDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTTL  368 (368)
Q Consensus       300 ~~~~---~~~~~~~~~~~~~~~~gt~~~~~~~a~~~---a--l~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t~  368 (368)
                      ...-   +.-...-.+.+-|++-+|+|+...-++.+   +  +.++...|++++.+++..++.++.+.|.+ .|+++
T Consensus       290 D~~G~~~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~-~G~~~  365 (939)
T TIGR00461       290 DALGNTALRLALQTREQHIRRDKATSNICTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLEN-DPHEL  365 (939)
T ss_pred             cCCCCccceeecccccccccccccCcchhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHh-CCCcc
Confidence            2210   00001223456788889988876555444   4  45666678999999999999999999988 67653

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.77  E-value=2e-17  Score=153.20  Aligned_cols=165  Identities=24%  Similarity=0.296  Sum_probs=141.2

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      .+..+.+++.++.+-|..   ..+.++++..||..++.++    +++||.|++....|.+++.-+....++.|+++.+++
T Consensus        62 nPT~~~lE~~~a~LEg~~---~~~afsSGmaAI~~~~l~l----l~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d  134 (396)
T COG0626          62 NPTRDALEEALAELEGGE---DAFAFSSGMAAISTALLAL----LKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVD  134 (396)
T ss_pred             CccHHHHHHHHHHhhCCC---cEEEecCcHHHHHHHHHHh----cCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEEC
Confidence            455668999999999876   5577788889999999888    899999999999999999999999999999999988


Q ss_pred             CCCCCCCCHHHHHHhcc-cCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecC
Q 017640          190 LNDDESPDLDKLKEMLS-RKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASS  268 (368)
Q Consensus       190 ~~~~~~~d~~~l~~~l~-~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~  268 (368)
                      ..     +.+.+++++. +++++|+++.|+||+..+.|+++|+++|+++|+++++|.+.+.+... ..-.+++|+++.|.
T Consensus       135 ~~-----~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~~q-~PL~~GaDIVvhSa  208 (396)
T COG0626         135 PG-----DDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVLQ-RPLELGADIVVHSA  208 (396)
T ss_pred             CC-----ChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCccccccc-ChhhcCCCEEEEec
Confidence            65     6667777777 59999999999999999999999999999999999999999977652 22246899999999


Q ss_pred             cCcCCCCc---ceEEEEccccc
Q 017640          269 HKMCGPTG---IGFLFGKSDLL  287 (368)
Q Consensus       269 ~K~~g~~G---~G~l~~~~~li  287 (368)
                      .|.+|+.+   .|.++.+++.+
T Consensus       209 TKyl~GHsDvl~G~v~~~~~~~  230 (396)
T COG0626         209 TKYLGGHSDVLGGVVLTPNEEL  230 (396)
T ss_pred             cccccCCcceeeeEEecChHHH
Confidence            99999887   77666565443

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.77  E-value=1.5e-16  Score=151.58  Aligned_cols=255  Identities=17%  Similarity=0.151  Sum_probs=169.8

Q ss_pred             CeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHH
Q 017640           67 KLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE  140 (368)
Q Consensus        67 ~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~  140 (368)
                      +.-|+|..+      .|+.+|.+.+++.+++..+..... +  .    ..+...++.+.|+++++.   +.++|++++++
T Consensus        34 G~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~--~----~~~~~~~la~~L~~~~~~---~~~~f~~SGse  103 (397)
T TIGR03246        34 GKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWHIGN-G--Y----TNEPVLRLAKKLVDATFA---DKVFFCNSGAE  103 (397)
T ss_pred             CCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhcccccC-c--c----CCHHHHHHHHHHHhhCCC---CEEEEeCCcHH
Confidence            334666533      567899999999999876421111 1  1    133455789999998864   38999999999


Q ss_pred             HHHHHHHHccCCC----CCCCCEEEEcCCCCcccHHHHHHHHHHc---------CCEEEEEeCCCCCCCCHHHHHHhccc
Q 017640          141 AINLVAYSWGLSN----LKSGDEVILTVAEHHSAIVPWQLVAQKT---------GANLKFLNLNDDESPDLDKLKEMLSR  207 (368)
Q Consensus       141 a~~~~~~~~~~~~----~~~gd~vl~~~~~~~s~~~~~~~~~~~~---------g~~v~~v~~~~~~~~d~~~l~~~l~~  207 (368)
                      |+..+++..+...    -..++.|+..+..||+............         ...+..++.+     |++.+++++.+
T Consensus       104 A~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~  178 (397)
T TIGR03246       104 ANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYN-----DLAAAKALISD  178 (397)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCCC-----CHHHHHHHhcc
Confidence            9999999753210    0134578888888887643322221100         0122334433     89999999988


Q ss_pred             CceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEEecCcCcCCCCc--
Q 017640          208 KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGPTG--  276 (368)
Q Consensus       208 ~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~g~~G--  276 (368)
                      ++++|+++.++++.|...|    +++|.++|++||+++|+||+|. +|..    ........+|++  +++|.+|. |  
T Consensus       179 ~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~pDi~--t~~K~lgg-G~p  255 (397)
T TIGR03246       179 KTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDIL--TSAKALGG-GFP  255 (397)
T ss_pred             CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCCCCEE--EeehhhhC-Ccc
Confidence            8999999988888887653    8999999999999999999984 2211    111122357776  56797762 4  


Q ss_pred             ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 017640          277 IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICS  356 (368)
Q Consensus       277 ~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l  356 (368)
                      +|++++++++++.+.....+                  ..|   +.+....+++.++++.+.+   +.+.++.+++.+++
T Consensus       256 igav~~~~~i~~~~~~~~~~------------------~t~---~~~p~~~aaa~a~l~~~~~---~~l~~~~~~~~~~l  311 (397)
T TIGR03246       256 IGAMLTTTEIAAHLKVGTHG------------------TTY---GGNPLACAVAGKVLDLVNT---PELLAGVKQRHDLF  311 (397)
T ss_pred             eeEEEEcHHHHHhccCCCcC------------------CCC---CCCHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHH
Confidence            89999999987776533211                  111   3455667777788887654   44677788888888


Q ss_pred             HHHHHhh
Q 017640          357 IIVIQER  363 (368)
Q Consensus       357 ~~~l~~~  363 (368)
                      .+.|+++
T Consensus       312 ~~~L~~l  318 (397)
T TIGR03246       312 VDGLEKI  318 (397)
T ss_pred             HHHHHHH
Confidence            8877764

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.77  E-value=3.5e-17  Score=147.27  Aligned_cols=265  Identities=16%  Similarity=0.188  Sum_probs=192.5

Q ss_pred             eEEeccCCCCCCcHHHHHHHHHHHHHhh--ccCCCCcchhhHH-HHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHH
Q 017640           68 LVYLDNAATSQKPIAVLKALQNYYEAYN--SNVHRGIHFLSAK-ATDEYELARKKVAAFINASDSGEIVFTKNATEAINL  144 (368)
Q Consensus        68 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~  144 (368)
                      .|.|=... ...++.|.+++...+..-+  +.|.. .++.|-. ..+......++..++||++-. +|...+| +.|+..
T Consensus        28 ~ieLIASE-N~~S~aV~~A~gS~ltnKYAEGyPgk-RyYgGce~VD~vE~laierak~LFga~~a-nVQPhSG-s~AN~a  103 (413)
T COG0112          28 HIELIASE-NFTSPAVMEAQGSDLTNKYAEGYPGK-RYYGGCEYVDEVEELAIERAKKLFGAEYA-NVQPHSG-SQANQA  103 (413)
T ss_pred             ceeeeecc-ccCCHHHHHHHhhhhhhccccCCCCc-cccCCCeeHHHHHHHHHHHHHHHhCCCcc-ccCCCCc-hHHHHH
Confidence            34444333 4578899999877776532  34443 2333333 345555688899999999854 5655555 579999


Q ss_pred             HHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcC--CEEEEEeCC-CCCCCCHHHHHHhccc-CceEEEEcccccc
Q 017640          145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTG--ANLKFLNLN-DDESPDLDKLKEMLSR-KTKLVVIHHISNM  220 (368)
Q Consensus       145 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g--~~v~~v~~~-~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~  220 (368)
                      +..++    ++|||+|+-.+-.|.+...-... ....|  .+++..+++ +++.||.+++++.... +||+|+.-....+
T Consensus       104 v~~Al----l~pGDtimgm~l~~GGHltHg~~-v~~sG~~~~~v~Y~vd~et~~IDyD~~~k~a~e~kPK~ii~G~SaY~  178 (413)
T COG0112         104 VYLAL----LQPGDTIMGLDLSHGGHLTHGSP-VNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKEVKPKLIIAGGSAYS  178 (413)
T ss_pred             HHHHH----cCCCCeEecccCCCCCcccCCCC-CCccceeEEeEecccccccCccCHHHHHHHHHHhCCCEEEECccccc
Confidence            99998    99999999888777665422101 11223  355666777 4599999999988765 8898887665544


Q ss_pred             cccccCHHHHHHHHHhcCCEEEEecCCcCCcc-----cccCCCCCccEEEecCcC-cCCCCcceEEEEcc-cccccCCCc
Q 017640          221 LASILPIEEIVHWSHDVGAKVLVDACQSVPHM-----VVDVQGLDADFLVASSHK-MCGPTGIGFLFGKS-DLLSAMPPF  293 (368)
Q Consensus       221 tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~-----~~~~~~~~~d~~~~s~~K-~~g~~G~G~l~~~~-~li~~l~~~  293 (368)
                        ..+|++++.++|++.|+++++|.+|-.|-+     +-++.  .+|++++|.|| +.||.| |++++++ ++.+++...
T Consensus       179 --r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~--~AdvVTtTTHKTlrGPrG-G~Il~~~eel~kkin~a  253 (413)
T COG0112         179 --RPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLP--HADVVTTTTHKTLRGPRG-GIILTNDEELAKKINSA  253 (413)
T ss_pred             --cccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCC--ccceEeCCcccCCCCCCc-eEEEeccHHHHHHhhhh
Confidence              578899999999999999999999986543     32222  39999999999 457776 8988886 777777754


Q ss_pred             ccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          294 LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       294 ~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      .+.|.                    .|.|...-++|.+.++....+.+.+...+++.++++.+.++|.+. |++
T Consensus       254 VFPg~--------------------qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~-G~~  306 (413)
T COG0112         254 VFPGL--------------------QGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKER-GFK  306 (413)
T ss_pred             cCCcc--------------------CCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHc-CCe
Confidence            43222                    357888889999999998888888999999999999999999884 543

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.76  E-value=2.1e-17  Score=151.22  Aligned_cols=168  Identities=24%  Similarity=0.297  Sum_probs=147.3

Q ss_pred             HHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeC
Q 017640          111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL  190 (368)
Q Consensus       111 ~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~  190 (368)
                      +....+++.++++.|+.   .++..+++..|+..++..+    +..|+.|+.....|.++...+.....+.|++..++..
T Consensus        77 Pt~~~le~~iaal~ga~---~~l~fsSGmaA~~~al~~L----~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~  149 (409)
T KOG0053|consen   77 PTRDVLESGIAALEGAA---HALLFSSGMAAITVALLHL----LPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDV  149 (409)
T ss_pred             CchHHHHHHHHHHhCCc---eEEEecccHHHHHHHHHHh----cCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeech
Confidence            33447889999999987   4677777778999999988    8999999999999999999999999999999999998


Q ss_pred             CCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcC
Q 017640          191 NDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK  270 (368)
Q Consensus       191 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K  270 (368)
                      +     |++++++++.+++++|.++.|.||++.+.|+++|.++||++|+++++|++-+.+.. .+.-.+|+|+++.|..|
T Consensus       150 ~-----~~~~~~~~i~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~-~~pL~lGADIV~hSaTK  223 (409)
T KOG0053|consen  150 D-----DLKKILKAIKENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYN-QDPLPLGADIVVHSATK  223 (409)
T ss_pred             h-----hHHHHHHhhccCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcccc-cChhhcCCCEEEEeeee
Confidence            8     89999999999999999999999999999999999999999999999999987743 34446789999999999


Q ss_pred             cCCCCc---ceEEEEc-ccccccCC
Q 017640          271 MCGPTG---IGFLFGK-SDLLSAMP  291 (368)
Q Consensus       271 ~~g~~G---~G~l~~~-~~li~~l~  291 (368)
                      ++|+..   .|.++.+ +++..+++
T Consensus       224 yi~Ghsdvi~G~iv~n~~~~~~~l~  248 (409)
T KOG0053|consen  224 YIGGHSDVIGGSVVLNSEELASRLK  248 (409)
T ss_pred             eecCCcceeeeEEecCcHHHHHHHH
Confidence            999887   7788776 56655554

>PRK15029 arginine decarboxylase; Provisional

Probab=99.74  E-value=1.1e-16  Score=159.88  Aligned_cols=223  Identities=11%  Similarity=0.081  Sum_probs=170.4

Q ss_pred             HHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeC
Q 017640          111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL  190 (368)
Q Consensus       111 ~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~  190 (368)
                      -.+.+.++..|+.||++  ...++++|+|.++..++.+.    +++||.|++...+|.|++.++.    ..|++++++..
T Consensus       205 G~I~eAq~~aA~~fgA~--~t~FlvNGST~gn~a~i~a~----~~~gd~Vlv~RN~HKSv~~al~----L~ga~Pvyl~P  274 (755)
T PRK15029        205 GAFGESEKYAARVFGAD--RSWSVVVGTSGSNRTIMQAC----MTDNDVVVVDRNCHKSIEQGLI----LTGAKPVYMVP  274 (755)
T ss_pred             cHHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHHh----cCCCCEEEeecccHHHHHHHHH----HcCCeEEEecc
Confidence            35778999999999997  37789999999999999988    9999999999999999876543    45999999976


Q ss_pred             CCC-----CCCC-----HHHHHHhcccC--ce--------EEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCC
Q 017640          191 NDD-----ESPD-----LDKLKEMLSRK--TK--------LVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVP  250 (368)
Q Consensus       191 ~~~-----~~~d-----~~~l~~~l~~~--~~--------~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~  250 (368)
                      ..+     +.++     ++.++++++..  .+        ++++++|+. .|.++++++|+++|+++|+.|++|+||+.-
T Consensus       275 ~~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~di~~I~~~~h~~~~~llvDEAhGah  353 (755)
T PRK15029        275 SRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYNAKEAQDLLEKTSDRLHFDEAWYGY  353 (755)
T ss_pred             cccccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC-cceeeCHHHHHHHHHhcCCeEEEECccccc
Confidence            532     3444     88999888542  23        889998854 799999999999999999999999999842


Q ss_pred             c-----ccc--cC-----CCCCcc-EEEecCcCcCC-CCcceEEEEccc--ccc--cCCCcccCCcceeecccCCCCCCC
Q 017640          251 H-----MVV--DV-----QGLDAD-FLVASSHKMCG-PTGIGFLFGKSD--LLS--AMPPFLGGGEMISDVFLDHSTFAD  312 (368)
Q Consensus       251 ~-----~~~--~~-----~~~~~d-~~~~s~~K~~g-~~G~G~l~~~~~--li~--~l~~~~~g~~~~~~~~~~~~~~~~  312 (368)
                      .     .|-  .+     ...++| +++-|.||.++ ....++|.++.+  .++  +++..+                  
T Consensus       354 ~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~~~~id~~r~~~~l------------------  415 (755)
T PRK15029        354 ARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAY------------------  415 (755)
T ss_pred             cccCccccccccccccccccCCCceEEEEchhhcccchhhhhhheeCCCccccCHHHHHHHH------------------
Confidence            1     111  11     114688 88889999765 556888888654  222  111111                  


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHhhcC
Q 017640          313 PPSRFEAGTPAIGEAIGLGAAIDYLST-IGMQKIHAYEVKWIICSIIVIQERHN  365 (368)
Q Consensus       313 ~~~~~~~gt~~~~~~~a~~~al~~~~~-~g~~~i~~~~~~l~~~l~~~l~~~~g  365 (368)
                        .-+.+.+|+++.++++..+..++.. .| ..+.++..+++..+++.|.++.+
T Consensus       416 --~~~qSTSPSY~LmASLD~ar~~m~~~~G-~~l~~~~i~~~~~~r~~l~~~~~  466 (755)
T PRK15029        416 --MMHATTSPLYAICASNDVAVSMMDGNSG-LSLTQEVIDEAVDFRQAMARLYK  466 (755)
T ss_pred             --HHHcCCCcHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHhccc
Confidence              2345668999999999999999986 45 45567777788888888877654

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.74  E-value=7.4e-16  Score=147.29  Aligned_cols=255  Identities=18%  Similarity=0.118  Sum_probs=165.5

Q ss_pred             CeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHH
Q 017640           67 KLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE  140 (368)
Q Consensus        67 ~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~  140 (368)
                      +..|+|..      ..|..+|.+.+++.+.++......   .. .   ..+...++.+.|+++.+.   +.+.|++++++
T Consensus        39 G~~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~---~~-~---~~~~~~~l~~~l~~~~~~---~~~~~~~sGse  108 (403)
T PRK05093         39 GKEYIDFAGGIAVTALGHCHPALVKALKEQGEKLWHIS---NV-F---TNEPALRLAKKLIDATFA---ERVFFANSGAE  108 (403)
T ss_pred             CCEEEEcCcCHHhccCCCCCHHHHHHHHHHHHhcCccc---Cc-c---CCHHHHHHHHHHHhhCCC---CEEEEeCchHH
Confidence            44466653      356789999999999887642211   10 0   122334788888888754   38899999999


Q ss_pred             HHHHHHHHccCCCC----CCCCEEEEcCCCCcccHHHHHHHH------H---HcCCEEEEEeCCCCCCCCHHHHHHhccc
Q 017640          141 AINLVAYSWGLSNL----KSGDEVILTVAEHHSAIVPWQLVA------Q---KTGANLKFLNLNDDESPDLDKLKEMLSR  207 (368)
Q Consensus       141 a~~~~~~~~~~~~~----~~gd~vl~~~~~~~s~~~~~~~~~------~---~~g~~v~~v~~~~~~~~d~~~l~~~l~~  207 (368)
                      |+..+++..+....    ...+.|+..+..||+.......+.      .   ....++..++.+     |++.+++.+.+
T Consensus       109 A~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~  183 (403)
T PRK05093        109 ANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPFN-----DLAAVKAVIDD  183 (403)
T ss_pred             HHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCCC-----CHHHHHHHhcC
Confidence            99999986522110    234578888888887654222211      0   001123344433     89999999988


Q ss_pred             CceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc--cc--cCCCCCccEEEecCcCcCCCCc--
Q 017640          208 KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM--VV--DVQGLDADFLVASSHKMCGPTG--  276 (368)
Q Consensus       208 ~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~--~~--~~~~~~~d~~~~s~~K~~g~~G--  276 (368)
                      ++++|+++.+++..|...|    +++|.++|++||+++|+|++|+ ++..  .+  ......+|+  .|++|.++ +|  
T Consensus       184 ~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi--~s~sK~l~-~G~r  260 (403)
T PRK05093        184 HTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPDI--LTSAKALG-GGFP  260 (403)
T ss_pred             CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCCE--EEeccccc-CCcc
Confidence            8999999955444444433    8999999999999999999988 2221  11  112234664  46789888 46  


Q ss_pred             ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 017640          277 IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICS  356 (368)
Q Consensus       277 ~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l  356 (368)
                      +|++++++++++.+.+...+.                  .  . ..+....+++.++++.+..   ..+.++.++..+++
T Consensus       261 ig~vv~~~~i~~~l~~~~~~~------------------t--~-~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l  316 (403)
T PRK05093        261 IGAMLTTAEIASHFKVGTHGS------------------T--Y-GGNPLACAVAEAVFDIINT---PEVLEGVKARRQRF  316 (403)
T ss_pred             eEEEEEcHHHHhhcCCCCCCC------------------C--C-CCCHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHH
Confidence            999999999887776433211                  1  1 3455567777777887754   23456677777777


Q ss_pred             HHHHHhh
Q 017640          357 IIVIQER  363 (368)
Q Consensus       357 ~~~l~~~  363 (368)
                      .+.|.++
T Consensus       317 ~~~L~~~  323 (403)
T PRK05093        317 VDGLQKI  323 (403)
T ss_pred             HHHHHHH
Confidence            7777664

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=99.74  E-value=5.4e-17  Score=150.97  Aligned_cols=268  Identities=18%  Similarity=0.144  Sum_probs=166.5

Q ss_pred             CeEEeccCCCCCCcHHHHHHHHHHHHHhh--ccCCCCcchhhHH-HHHHHHHHHHHHHHHcCCCCCC-cE-EEeCCHHHH
Q 017640           67 KLVYLDNAATSQKPIAVLKALQNYYEAYN--SNVHRGIHFLSAK-ATDEYELARKKVAAFINASDSG-EI-VFTKNATEA  141 (368)
Q Consensus        67 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~r~~la~~~~~~~~~-~v-~~t~g~t~a  141 (368)
                      ..+.|-.+. ..+++.+.+++...+..-+  +.|.. .++.|.. ..+...-.++++.++|++++.+ .+ +-.-|++.|
T Consensus        21 ~~l~LiaSE-N~~Sp~v~~al~S~l~nkyaeg~pg~-ryy~G~~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~A   98 (399)
T PF00464_consen   21 STLNLIASE-NYMSPAVREALGSDLTNKYAEGYPGK-RYYGGCEYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQA   98 (399)
T ss_dssp             HSEE-CTT------HHHHHHHTSGGGGS-TTEETTE-ESSSSTHHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHHH
T ss_pred             cCccccCcc-cccCHHHHHHhCCcceeeccccCCCc-ccccCcchhhHHHHHHHHHHHHHhCCCcccceEEeecCCchHH
Confidence            345665544 3567788888765555422  22221 2233333 4455556889999999998543 22 344678899


Q ss_pred             HHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHH-HH-----HHcCCEEEEEeCC-CCCCCCHHHHHHhccc-CceEEE
Q 017640          142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQL-VA-----QKTGANLKFLNLN-DDESPDLDKLKEMLSR-KTKLVV  213 (368)
Q Consensus       142 ~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~-~~-----~~~g~~v~~v~~~-~~~~~d~~~l~~~l~~-~~~~v~  213 (368)
                      +..++.++    ++|||+|+..+..+.+....-.. -.     .....+.+.++++ +++.||.+++++.+.. +|++|+
T Consensus        99 n~av~~aL----l~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi  174 (399)
T PF00464_consen   99 NLAVYMAL----LKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAKEHKPKLII  174 (399)
T ss_dssp             HHHHHHHH----T-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHHH--SEEE
T ss_pred             HHHHHHHH----HhhcCcEEecChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHHHHHHHhhcCCCEEE
Confidence            99999999    99999999888766543310000 00     1113578888888 5699999999998865 899999


Q ss_pred             EcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcc-----cccCCCCCccEEEecCcCc-CCCCcceEEEEc----
Q 017640          214 IHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM-----VVDVQGLDADFLVASSHKM-CGPTGIGFLFGK----  283 (368)
Q Consensus       214 ~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~-----~~~~~~~~~d~~~~s~~K~-~g~~G~G~l~~~----  283 (368)
                      +.....|  ..+|++++.++|++.|+++++|.+|..|-+     +-.++  .+|++++|.||. .||.| |+++++    
T Consensus       175 ~G~S~y~--~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~--~ADvvt~sThKtl~GPrg-giI~~~~~~~  249 (399)
T PF00464_consen  175 CGASSYP--RPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFP--YADVVTGSTHKTLRGPRG-GIILTNKGSK  249 (399)
T ss_dssp             EE-SSTS--S---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCC--TSSEEEEESSGGG-SSS--EEEEES-SEE
T ss_pred             ECchhcc--CccCHHHHHHHHHhcCcEEEecccccccceehheecCccc--cceEEEeeccccccccCc-eEEEEcCCcc
Confidence            8887665  467899999999999999999999985433     32232  389999999995 56775 999999    


Q ss_pred             ----------ccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Q 017640          284 ----------SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWI  353 (368)
Q Consensus       284 ----------~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~  353 (368)
                                +++.+++......                    ...|.+....+++++.++....+...+...+++.+++
T Consensus       250 ~~~~~~~~~~~~l~~~I~~avfP--------------------~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NA  309 (399)
T PF00464_consen  250 NVDKKGKEIDEELAEKIDSAVFP--------------------GLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNA  309 (399)
T ss_dssp             EE-TTS-EEEHHHHHHHHHHHTT--------------------TT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred             ccCCcccccHHHHHHHhccccCC--------------------CcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHH
Confidence                      4444444422211                    1235788889999999999876555678888899999


Q ss_pred             HHHHHHHHhhcCC
Q 017640          354 ICSIIVIQERHNT  366 (368)
Q Consensus       354 ~~l~~~l~~~~g~  366 (368)
                      +.+.+.|.+. |+
T Consensus       310 k~La~~L~~~-G~  321 (399)
T PF00464_consen  310 KALAEALQER-GF  321 (399)
T ss_dssp             HHHHHHHHHT-T-
T ss_pred             HHHHHHHhhC-Cc
Confidence            9999999876 44

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.74  E-value=5.9e-16  Score=146.77  Aligned_cols=243  Identities=16%  Similarity=0.140  Sum_probs=157.1

Q ss_pred             CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCC
Q 017640           76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLK  155 (368)
Q Consensus        76 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~  155 (368)
                      .|..++.+.+++.+.++....... .      ...+...++.+.+++..+.   +.+++++++++|+..++....  ...
T Consensus        43 lG~~~p~v~~a~~~~~~~~~~~~~-~------~~~~~~~~la~~l~~~~~~---~~~~~~~sG~~a~~~A~~~a~--~~~  110 (377)
T PRK02936         43 LGHCHPTVTKAVQEQLDDIWHVSN-L------FTNSLQEEVASLLAENSAG---DLVFFCNSGAEANEAALKLAR--KHT  110 (377)
T ss_pred             CCCCCHHHHHHHHHHHHhcccccc-c------cCCHHHHHHHHHHHhcCCC---CEEEEeCCcHHHHHHHHHHHH--Hhc
Confidence            467899999999999886421110 0      0123333445555544432   378999999999999998542  123


Q ss_pred             CCCEEEEcCCCCcccHHHHHHHHHHcCC---------EEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccC
Q 017640          156 SGDEVILTVAEHHSAIVPWQLVAQKTGA---------NLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILP  226 (368)
Q Consensus       156 ~gd~vl~~~~~~~s~~~~~~~~~~~~g~---------~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~  226 (368)
                      .++.|+..++.||+..............         .+..++.+     |++.+++.+.+++++|+++.+++++|...+
T Consensus       111 g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~~~~~~~~ii~e~i~~~~G~~~~  185 (377)
T PRK02936        111 GKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFN-----DIKALKEVMNEEVAAVMLEVVQGEGGVIPA  185 (377)
T ss_pred             CCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCC-----CHHHHHHhccCCeEEEEEecccCCCCCccC
Confidence            4467888888888654333322110000         11223322     789999999888999999999999888754


Q ss_pred             ----HHHHHHHHHhcCCEEEEecCCc-CCcc--ccc--CCCCCccEEEecCcCcCCCCc--ceEEEEcccccccCCCccc
Q 017640          227 ----IEEIVHWSHDVGAKVLVDACQS-VPHM--VVD--VQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLG  295 (368)
Q Consensus       227 ----l~~i~~l~~~~g~~li~D~a~~-~~~~--~~~--~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~~~~~  295 (368)
                          +++|.++|++||+++|+|++|. ++..  .+.  .....+|++  +++|.++ .|  +|+++.++++.+.+.+...
T Consensus       186 ~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~-~G~~ig~v~~~~~~~~~~~~~~~  262 (377)
T PRK02936        186 DPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPDIV--TVAKGLG-NGIPVGAMIGKKELGTAFGPGSH  262 (377)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCCCcEE--EEccccc-CCCccEEEEEcHHHHhhccCCCC
Confidence                8999999999999999999986 2221  111  112346654  5789888 45  8999999988776653221


Q ss_pred             CCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHh
Q 017640          296 GGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       296 g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~  362 (368)
                      .                     .....+....+++.++++.+...   ...++.+++.+++.+.|.+
T Consensus       263 ~---------------------~t~~~~~~~~aaa~a~l~~~~~~---~~~~~~~~~~~~l~~~L~~  305 (377)
T PRK02936        263 G---------------------STFGGNPLAMAAAKEVLQVIKQP---SFLEEVQEKGEYFLQKLQE  305 (377)
T ss_pred             C---------------------CCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHH
Confidence            1                     11145777788888888877432   2335555566666666554

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=99.74  E-value=1.8e-15  Score=142.01  Aligned_cols=263  Identities=15%  Similarity=0.177  Sum_probs=181.1

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++-.|||..+      .|+.+|.|++++++++..+........+      .+...++.+.|.+.+..+....++|+++++
T Consensus        54 dG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~h~~~~~~~------~e~~v~~ae~L~~~~p~~~~~~~~f~~sGa  127 (447)
T COG0160          54 DGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNHTHTRDLY------YEPYVELAEKLTALAPGSGLKKVFFGNSGA  127 (447)
T ss_pred             CCCEEEEcccCcchhccCCCCHHHHHHHHHHHHHhhcccCCccc------chhHHHHHHHHHHhCCcccCCeEEecCCcH
Confidence            5567888765      5688999999999999987533222111      255567888888888775334789999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcC----------CEEEEEeCCCCCC------------CC
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTG----------ANLKFLNLNDDES------------PD  197 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g----------~~v~~v~~~~~~~------------~d  197 (368)
                      +|++.+++..+.  ...+..|+.....||+.......+.....          ..+..+|....+.            -.
T Consensus       128 eA~E~AiKiAr~--~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~  205 (447)
T COG0160         128 EAVEAAIKIARA--YTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDA  205 (447)
T ss_pred             HHHHHHHHHHHH--HhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHH
Confidence            999999997632  44567888888898876654444321111          1244555432111            12


Q ss_pred             HHHHHHhccc------CceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-C---Ccc-cccCCCCCcc
Q 017640          198 LDKLKEMLSR------KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-V---PHM-VVDVQGLDAD  262 (368)
Q Consensus       198 ~~~l~~~l~~------~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~---~~~-~~~~~~~~~d  262 (368)
                      .+.++..+..      ++.+++++.++...|.+.|    ++++.++|++||+++|+||+|+ +   |.+ .++.....+|
T Consensus       206 ~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~PD  285 (447)
T COG0160         206 LEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPD  285 (447)
T ss_pred             HHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCCCCC
Confidence            3334554422      5789999999999999988    8999999999999999999998 3   322 2222233699


Q ss_pred             EEEecCcCcCCC-CcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC
Q 017640          263 FLVASSHKMCGP-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG  341 (368)
Q Consensus       263 ~~~~s~~K~~g~-~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g  341 (368)
                      +++.|  |.+|. ..+|.++.++++.+ ..|...+++.                     .-|..+.++..+.|+.+++. 
T Consensus       286 ivt~a--K~ig~G~Pl~avv~r~ei~~-~~~g~~~~Tf---------------------~GNpva~Aaa~AvL~vie~e-  340 (447)
T COG0160         286 IVTLA--KSLGGGLPLSAVVGRAEIMD-WPPGGHGGTF---------------------GGNPVACAAALAVLDVIEEE-  340 (447)
T ss_pred             EEEec--ccccCCCceeEEeccHHhcc-cCCcccCCCC---------------------CcCHHHHHHHHHHHHHHHHc-
Confidence            99988  96664 22999999999876 4444433222                     45666777777778877763 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Q 017640          342 MQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       342 ~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                        .+.++..++-+++.++|.++
T Consensus       341 --~L~~~a~~~G~~l~~~L~~l  360 (447)
T COG0160         341 --NLLERAAELGEYLRDRLEEL  360 (447)
T ss_pred             --cHHHHHHHHHHHHHHHHHHH
Confidence              67788888888888888654

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.73  E-value=4.5e-16  Score=149.74  Aligned_cols=257  Identities=16%  Similarity=0.182  Sum_probs=167.0

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++--|+|..+      .|+.++.+.+++.+.+.....+   .      ...+...+++++|++.+...  +.|+|++|++
T Consensus        46 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~---~------~~~~~~~~lae~l~~~~~~~--~~v~~~~sGs  114 (423)
T TIGR00713        46 DGNEYIDYVLSWGPLILGHAHPRVVEAVKEALERGTSY---G------APTEAEILLAKEIISRVPSV--EMVRFVNSGT  114 (423)
T ss_pred             CCCEEEEccccccccccCCCCHHHHHHHHHHHHhCCcC---C------CCCHHHHHHHHHHHHhCCcc--cEEEEeCCHH
Confidence            3445777532      4578999999999998763211   1      01234457999999988654  4899999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCC-----------------EEEEEeCCCCCCCCHHHHH
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGA-----------------NLKFLNLNDDESPDLDKLK  202 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~-----------------~v~~v~~~~~~~~d~~~l~  202 (368)
                      +|+..+++..+.  ...+++|+..++.|++.......... .+.                 .+..++.     .|+++++
T Consensus       115 eA~e~Alk~ar~--~~gr~~ii~~~~~yhG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~  186 (423)
T TIGR00713       115 EATMSAVRLARG--YTGRDKIIKFEGCYHGHHDALLVKAG-SGAATLGLPTSPGVPEDFAKLTLVLPY-----NDLEALE  186 (423)
T ss_pred             HHHHHHHHHHHH--hhCCCEEEEEcCCCCCChhhhhcccc-CcccccCCCCCCCCCcccccceEEeCC-----CCHHHHH
Confidence            999999986532  34568999999999986543332110 011                 1122221     1789999


Q ss_pred             Hhcc---cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCcCCcc----cccCCCCCccEEEecCcCc
Q 017640          203 EMLS---RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQSVPHM----VVDVQGLDADFLVASSHKM  271 (368)
Q Consensus       203 ~~l~---~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~~~~~----~~~~~~~~~d~~~~s~~K~  271 (368)
                      +.+.   +++++|+++...+.+|.+.|    +++|.++|++||+++|+||+|.--..    ........+|++  +++|.
T Consensus       187 ~~i~~~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~~~~~~~~~~~pDi~--t~sK~  264 (423)
T TIGR00713       187 EVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALGGAQEYFGVEPDLT--TLGKI  264 (423)
T ss_pred             HHHHHcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCcchhHHHhCCCcchh--hhhhh
Confidence            9886   56788888755555898887    78999999999999999999862111    111122346754  67898


Q ss_pred             CCCCc--ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC-HHHHHHH
Q 017640          272 CGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG-MQKIHAY  348 (368)
Q Consensus       272 ~g~~G--~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g-~~~i~~~  348 (368)
                      +| .|  +|++++++++++.+.+...   .               ........+..+.+++.++++.+++.+ .+.+++.
T Consensus       265 l~-~G~pig~v~~~~~i~~~~~~~~~---~---------------~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~  325 (423)
T TIGR00713       265 IG-GGLPVGAFGGRREIMERLAPEGP---V---------------YQAGTLSGNPLAMAAGLATLKLLDEEGVYTELDEL  325 (423)
T ss_pred             hc-CCCceeeeeEHHHHHHhhCcCCC---e---------------eeccCCCCCHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            87 45  8999999998877763110   0               011112466777777888888877643 3344444


Q ss_pred             HHHHHHHHHHHHHh
Q 017640          349 EVKWIICSIIVIQE  362 (368)
Q Consensus       349 ~~~l~~~l~~~l~~  362 (368)
                      ...+.+.+.+.+.+
T Consensus       326 ~~~~~~~l~~~~~~  339 (423)
T TIGR00713       326 AKRLAEGLSEVLED  339 (423)
T ss_pred             HHHHHHHHHHHHHh
Confidence            44444444444443

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.73  E-value=1.9e-15  Score=143.15  Aligned_cols=247  Identities=15%  Similarity=0.116  Sum_probs=154.5

Q ss_pred             CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCC
Q 017640           76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLK  155 (368)
Q Consensus        76 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~  155 (368)
                      .++ .|.+.+++.+.+..+..++..           ...++++.+++.+....+..++|++|+++|+..++.....  ..
T Consensus        43 lG~-~p~v~~a~~~~~~~~~~~~~~-----------~~~~~~~~la~~l~~~~~~~~~~~~SGseA~~~Al~~ar~--~~  108 (375)
T PRK04260         43 LGF-HPQVQQALQKQAGLIWHSPNL-----------YLNSLQEEVAQKLIGDKDYLAFFCNSGAEANEAAIKIARK--AT  108 (375)
T ss_pred             CCC-CHHHHHHHHHHHHhcCcccCc-----------cCCHHHHHHHHHHhcCcCCEEEEcCccHHHHHHHHHHHHH--hc
Confidence            356 788999999988765333211           1125667777765443332468999999999988887521  34


Q ss_pred             CCCEEEEcCCCCcccHHHHHHHHHH------cCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccC---
Q 017640          156 SGDEVILTVAEHHSAIVPWQLVAQK------TGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILP---  226 (368)
Q Consensus       156 ~gd~vl~~~~~~~s~~~~~~~~~~~------~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~---  226 (368)
                      +++.|++.+..||+...........      .+..+..++..  -..|++.+++.+.+++++|+++.+++++|.+.+   
T Consensus       109 ~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dl~~l~~~l~~~~a~vi~e~v~~~~G~~~~~~~  186 (375)
T PRK04260        109 GKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYA--IFNDLNSVKALVNKNTAAVMLELVQGESGVLPADKD  186 (375)
T ss_pred             CCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEe--CCCCHHHHHHhcCCCeEEEEECCeECCCCCcCCCHH
Confidence            5678888888877644222221100      01011001100  013899999999888899999999999999876   


Q ss_pred             -HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEEecCcCcCCCC-cceEEEEcccccccCCCcccCCcc
Q 017640          227 -IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGPT-GIGFLFGKSDLLSAMPPFLGGGEM  299 (368)
Q Consensus       227 -l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~g~~-G~G~l~~~~~li~~l~~~~~g~~~  299 (368)
                       +++|.++|+++|+++++|++|. ++..    ........+|++  +++|.+++. -+|++++++++.+.+......   
T Consensus       187 ~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~~---  261 (375)
T PRK04260        187 FVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPDIF--TLAKGLANGVPVGAMLAKSSLGGAFGYGSHG---  261 (375)
T ss_pred             HHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCCCEE--EecccccCCcceEEEEEcHHHHhhcCCCCCC---
Confidence             8999999999999999999985 2211    111223457754  788988742 289999999887666532111   


Q ss_pred             eeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHH
Q 017640          300 ISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG-MQKIHAYEVKWIICSIIVIQ  361 (368)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g-~~~i~~~~~~l~~~l~~~l~  361 (368)
                                        ...+.+.....++.++++.+...+ .+++++....+.+.+.+.+.
T Consensus       262 ------------------~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~  306 (375)
T PRK04260        262 ------------------STFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQ  306 (375)
T ss_pred             ------------------CCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence                              111445556677777777765422 23444444444444444333

>PLN02624 ornithine-delta-aminotransferase

Probab=99.73  E-value=8.7e-16  Score=149.03  Aligned_cols=256  Identities=13%  Similarity=0.149  Sum_probs=168.6

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..      ..|+..|.+.+++.+.+..+.....   ..    ..+...++.+.++++++.   +.++|+++++
T Consensus        73 dG~~ylD~~sg~~~~~~Gh~~p~v~~ai~~ql~~~~~~~~---~~----~~~~~~~la~~L~~~~~~---~~~~f~~SGs  142 (474)
T PLN02624         73 EGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLTLSSR---AF----YNDKFPEFAEYLTSMFGY---DMVLPMNTGA  142 (474)
T ss_pred             CCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhcCCccc---cc----CCHHHHHHHHHHHhhcCC---CeEEEeCChH
Confidence            344566653      2456799999999999987532211   11    124445788889998864   3889999999


Q ss_pred             HHHHHHHHHccCCC-----CCCC-CEEEEcCCCCcccHHHHHHHHHHc------C---CEEEEEeCCCCCCCCHHHHHHh
Q 017640          140 EAINLVAYSWGLSN-----LKSG-DEVILTVAEHHSAIVPWQLVAQKT------G---ANLKFLNLNDDESPDLDKLKEM  204 (368)
Q Consensus       140 ~a~~~~~~~~~~~~-----~~~g-d~vl~~~~~~~s~~~~~~~~~~~~------g---~~v~~v~~~~~~~~d~~~l~~~  204 (368)
                      +|++.++.......     ..++ ..|+.....|++.......+....      +   ..+..++.+     |++.+++.
T Consensus       143 eA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~  217 (474)
T PLN02624        143 EGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDFG-----DLDALEKI  217 (474)
T ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCCC-----CHHHHHHH
Confidence            99999998542110     0112 357777888887643333221100      0   012233332     78889888


Q ss_pred             cc---cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEEecCcCcC
Q 017640          205 LS---RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMC  272 (368)
Q Consensus       205 l~---~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~  272 (368)
                      ++   +++++|+++.+++++|.++|    +++|.++|++||+++|+||+|. +|..    ..+.....+|+++.  +|.+
T Consensus       218 l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i~pDiv~l--sK~l  295 (474)
T PLN02624        218 FEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEVRPDVVIL--GKAL  295 (474)
T ss_pred             HHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhcCCCCCEEEe--cccc
Confidence            85   35789999999999999998    9999999999999999999997 3321    22223446787775  5977


Q ss_pred             CCCc--ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH
Q 017640          273 GPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEV  350 (368)
Q Consensus       273 g~~G--~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~  350 (368)
                      |..+  +|++++++++++.+.+...+.                  .|   +.+....+++.++++.+.+.   .+.++..
T Consensus       296 ggG~~pigav~~~~~i~~~~~~~~~~~------------------T~---~g~pl~~aaa~aaLe~l~~~---~l~~~~~  351 (474)
T PLN02624        296 GGGVIPVSAVLADKDVMLCIKPGEHGS------------------TF---GGNPLASAVAMAALQVVQDE---KLAERSA  351 (474)
T ss_pred             cCCCCcceeeeecHHHHhHhccCCcCC------------------CC---CCCHHHHHHHHHHHHHHHhc---hHHHHHH
Confidence            7553  899999888776655432211                  11   45666778888888887763   3445555


Q ss_pred             HHHHHHHHHHHh
Q 017640          351 KWIICSIIVIQE  362 (368)
Q Consensus       351 ~l~~~l~~~l~~  362 (368)
                      ++.+++.+.+.+
T Consensus       352 ~~~~~l~~~L~~  363 (474)
T PLN02624        352 KLGQELRDQLQK  363 (474)
T ss_pred             HHHHHHHHHHHH
Confidence            666666665554

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.73  E-value=1e-15  Score=146.27  Aligned_cols=255  Identities=13%  Similarity=0.110  Sum_probs=168.8

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..+      .|+..|.+.+++.+.+........ +  .    ..+...++.+.++++++.   +.++|++|++
T Consensus        37 dG~~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-~--~----~~~~~~~la~~l~~~~~~---~~v~~~~sGs  106 (406)
T PRK12381         37 QGKEYIDFAGGIAVNALGHAHPALREALNEQASKFWHTGN-G--Y----TNEPVLRLAKKLIDATFA---DRVFFCNSGA  106 (406)
T ss_pred             CCCEEEEcCcCHhhccCCCCCHHHHHHHHHHHhhcccccC-c--c----CCHHHHHHHHHHHhhCCC---CeEEEcCCcH
Confidence            3445677643      567799999999999876422111 1  1    123345788889888754   3899999999


Q ss_pred             HHHHHHHHHccCCC----CCCCCEEEEcCCCCcccHHHHHHHHHHcC---------CEEEEEeCCCCCCCCHHHHHHhcc
Q 017640          140 EAINLVAYSWGLSN----LKSGDEVILTVAEHHSAIVPWQLVAQKTG---------ANLKFLNLNDDESPDLDKLKEMLS  206 (368)
Q Consensus       140 ~a~~~~~~~~~~~~----~~~gd~vl~~~~~~~s~~~~~~~~~~~~g---------~~v~~v~~~~~~~~d~~~l~~~l~  206 (368)
                      +|+..+++..+...    ..+++.|+..+..||+.......+.....         ..+..++.     .|++.+++.+.
T Consensus       107 eA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~  181 (406)
T PRK12381        107 EANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAY-----NDLNSASALID  181 (406)
T ss_pred             HHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCC-----CCHHHHHHhcc
Confidence            99999998753210    12456889989999986543322211000         01122222     28899999998


Q ss_pred             cCceEEEEccccccccccc--C---HHHHHHHHHhcCCEEEEecCCc-CCcc--cc--cCCCCCccEEEecCcCcCCCCc
Q 017640          207 RKTKLVVIHHISNMLASIL--P---IEEIVHWSHDVGAKVLVDACQS-VPHM--VV--DVQGLDADFLVASSHKMCGPTG  276 (368)
Q Consensus       207 ~~~~~v~~~~~~n~tG~~~--~---l~~i~~l~~~~g~~li~D~a~~-~~~~--~~--~~~~~~~d~~~~s~~K~~g~~G  276 (368)
                      +++++|+++. .+++|-++  |   +++|.++|++||+++|+||+|. +|..  .+  ......+|+  .+++|.+|+ |
T Consensus       182 ~~~aaviiEP-v~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~pDi--~t~sK~l~g-G  257 (406)
T PRK12381        182 DQTCAVIVEP-IQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDV--LTTAKALGG-G  257 (406)
T ss_pred             CCeeEEEEeC-CcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCCCCE--EEehhhhhC-C
Confidence            8888888874 56665543  2   8999999999999999999984 3221  11  112234676  477797763 4


Q ss_pred             --ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Q 017640          277 --IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWII  354 (368)
Q Consensus       277 --~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~  354 (368)
                        +|++++++++++.+.+...+.                     ..+.+....+++.++++.+.+   +.+.++.+++.+
T Consensus       258 ~~ig~~~~~~~~~~~~~~~~~~~---------------------t~~~~pl~~aaa~a~l~~l~~---~~~~~~~~~~~~  313 (406)
T PRK12381        258 FPIGAMLTTEKCASVMTVGTHGT---------------------TYGGNPLASAVAGKVLELINT---PEMLNGVKQRHD  313 (406)
T ss_pred             CceEEEEEcHHHHhhcCCCCCCC---------------------CCCCCHHHHHHHHHHHHHHhh---ccHHHHHHHHHH
Confidence              899999999887776432211                     114566677778888887754   356777888888


Q ss_pred             HHHHHHHhh
Q 017640          355 CSIIVIQER  363 (368)
Q Consensus       355 ~l~~~l~~~  363 (368)
                      ++.+.|.+.
T Consensus       314 ~l~~~L~~l  322 (406)
T PRK12381        314 WFVERLNTI  322 (406)
T ss_pred             HHHHHHHHH
Confidence            888877764

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.72  E-value=2.1e-15  Score=144.12  Aligned_cols=246  Identities=13%  Similarity=0.138  Sum_probs=168.4

Q ss_pred             CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCC--
Q 017640           76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSN--  153 (368)
Q Consensus        76 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~--  153 (368)
                      .|...|.+.+++.+.+..+...   +..    ...+...++.+.++++++.+   .+++++++++|+..++..+....  
T Consensus        51 ~Gh~~p~v~~a~~~~~~~~~~~---~~~----~~~~~~~~l~~~l~~~~~~~---~~~~~~SGs~A~e~ai~~a~~~~~~  120 (401)
T TIGR01885        51 QGHCHPKIVKALTEQAQKLTLS---SRA----FYNDVFGEFAEYVTKLFGYD---KVLPMNTGAEAVETAIKLARKWGYK  120 (401)
T ss_pred             CCCCCHHHHHHHHHHHHhcccc---ccc----cCCHHHHHHHHHHHhhcCCC---EEEEeCccHHHHHHHHHHHHHHhhh
Confidence            3456899999999988764311   110    02355668999999999753   88999999999999998752110  


Q ss_pred             ----CCCCCEEEEcCCCCccc-HHHHHHHHH------HcC---CEEEEEeCCCCCCCCHHHHHHhcc---cCceEEEEcc
Q 017640          154 ----LKSGDEVILTVAEHHSA-IVPWQLVAQ------KTG---ANLKFLNLNDDESPDLDKLKEMLS---RKTKLVVIHH  216 (368)
Q Consensus       154 ----~~~gd~vl~~~~~~~s~-~~~~~~~~~------~~g---~~v~~v~~~~~~~~d~~~l~~~l~---~~~~~v~~~~  216 (368)
                          ...++.|+.....|++. ...+. ...      ..+   ..+..++.+     |+++|++.++   +++.+|+++.
T Consensus       121 ~~~~~~~~~~i~~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~avi~E~  194 (401)
T TIGR01885       121 VKGIPENQAIIVSAKGNFHGRTLGAIS-MSTDPDSRTNFGPYVPGFKKIPYN-----NLEALEEALEDHGPNVCAFIVEP  194 (401)
T ss_pred             hcCCCCCCCEEEEECCCcCcccHHHHh-CcCCcccccccCCCCCCceEeCCC-----CHHHHHHHHHhcCCCEEEEEEeC
Confidence                12346788888888864 33222 111      011   123334433     7889998885   4568899999


Q ss_pred             cccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc--c--ccCCCCCccEEEecCcCcCCCCc--ceEEEEccc
Q 017640          217 ISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM--V--VDVQGLDADFLVASSHKMCGPTG--IGFLFGKSD  285 (368)
Q Consensus       217 ~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~--~--~~~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~  285 (368)
                      +++++|.+.|    +++|.++|++||+++|+||+|. +|..  .  .+.....+|+++.|  |.++..+  +|+++.+++
T Consensus       195 v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~~~~~~~~di~~~g--K~l~~g~~~ig~v~~~~~  272 (401)
T TIGR01885       195 IQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENVKPDIVLLG--KALSGGVYPVSAVLADDD  272 (401)
T ss_pred             ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHHhhcCCCCCEEEee--ccccCCCCCcEEEEEcHH
Confidence            9999999998    9999999999999999999975 2211  1  22233467887654  9776543  889999998


Q ss_pred             ccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          286 LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       286 li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +++.+++...+                  ..+   +.+....+++.++++.+.+.   .+.++..++.+++.+.|+++
T Consensus       273 i~~~~~~~~~~------------------~t~---~~~p~~~~aa~a~L~~i~~~---~l~~~~~~~~~~~~~~L~~l  326 (401)
T TIGR01885       273 VMLTIKPGEHG------------------STY---GGNPLACAVAVAALEVLEEE---KLAENAEKLGEIFRDQLKKL  326 (401)
T ss_pred             HHhhccCCCCC------------------CCC---CCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhc
Confidence            88776542211                  111   34566677778888888763   45678888889999888875

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK13578 ornithine decarboxylase; Provisional

Probab=99.71  E-value=2.7e-16  Score=155.52  Aligned_cols=233  Identities=17%  Similarity=0.160  Sum_probs=168.7

Q ss_pred             HHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC
Q 017640          112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN  191 (368)
Q Consensus       112 ~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~  191 (368)
                      .+.+.++.+|+.||++.  ..++++|+|.++..++.+.    +++||.|++...+|.|++.+   .....|++++++...
T Consensus       175 ~i~eAq~~AA~~fgAd~--tyFlvNGTS~gn~a~i~a~----~~~Gd~VLvdRN~HKSv~hg---aLiLsGa~PVYl~P~  245 (720)
T PRK13578        175 AAKDAQKHAAKVFNADK--TYFVLNGTSASNKVVTNAL----LTPGDLVLFDRNNHKSNHHG---ALIQAGATPVYLETA  245 (720)
T ss_pred             HHHHHHHHHHHHhCCCc--eEEEeCChhHHHHHHHHHh----cCCCCEEEeecccHHHHHHH---HHHHcCCeEEEeecc
Confidence            46789999999999973  6788999999999999998    99999999999999998764   123459999999876


Q ss_pred             CC-----CCCCHH-----HHHHhcccC----------ceEEEEcccccccccccCHHHHHHH-HHhcCCEEEEecCCcCC
Q 017640          192 DD-----ESPDLD-----KLKEMLSRK----------TKLVVIHHISNMLASILPIEEIVHW-SHDVGAKVLVDACQSVP  250 (368)
Q Consensus       192 ~~-----~~~d~~-----~l~~~l~~~----------~~~v~~~~~~n~tG~~~~l~~i~~l-~~~~g~~li~D~a~~~~  250 (368)
                      .+     +.++.+     .++++|...          .+++++++++. .|.++++++|+++ |+.++ +|++|+||+.-
T Consensus       246 ~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY-dG~~ydi~~I~~~~~h~~~-~llvDEAhgah  323 (720)
T PRK13578        246 RNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY-DGTIYNARQVVDKIGHLCD-YILFDSAWVGY  323 (720)
T ss_pred             ccccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC-cceeecHHHHHHHhhccCC-cEEEeCcchhh
Confidence            43     345544     488887654          48889988844 7999999999998 68888 99999998832


Q ss_pred             --cccc--cC----CCCCcc----EEEecCcCcCC-CCcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCC
Q 017640          251 --HMVV--DV----QGLDAD----FLVASSHKMCG-PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRF  317 (368)
Q Consensus       251 --~~~~--~~----~~~~~d----~~~~s~~K~~g-~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~  317 (368)
                        ..+.  ++    -..+.|    +++-|.||.++ ....++|.++.+.++.-+....           ..++...-.-+
T Consensus       324 ~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~~~i~g~~~~v~-----------~~r~~~al~m~  392 (720)
T PRK13578        324 EQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIKGQARYCP-----------HKRLNNAFMLH  392 (720)
T ss_pred             hccCcccccCChhhhhcCCCCCCeEEEEChhhcchhhhhHhhhhcCCcccccccccCC-----------HHHHHHHHHHH
Confidence              1121  11    134677    99999999765 6668888887765532110000           00000001234


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH-HhhcCC
Q 017640          318 EAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVI-QERHNT  366 (368)
Q Consensus       318 ~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l-~~~~g~  366 (368)
                      .+.+|+++.++++..+..++.....+.+.+...+++..+++.| ..+.++
T Consensus       393 qSTSPsY~LmASLDva~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~  442 (720)
T PRK13578        393 ASTSPFYPLFAALDVNAKMHEGESGRRLWMECVKLGIEARKLILARCKLI  442 (720)
T ss_pred             cCCChHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            5668999999999999998886434566677777888888887 555554

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.70  E-value=5.5e-15  Score=140.35  Aligned_cols=260  Identities=14%  Similarity=0.073  Sum_probs=163.7

Q ss_pred             CeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHH
Q 017640           67 KLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE  140 (368)
Q Consensus        67 ~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~  140 (368)
                      +.-|+|..      ..|+..|.+.+++.+.+...... ....      ..+...++.+.+.+..+.   +.++|++|+++
T Consensus        35 G~~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~~~~~~-~~~~------~~~~~~~la~~l~~~~~~---~~v~f~~SGse  104 (395)
T PRK03715         35 GKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLINP-SPAF------YNEPMAKLAGLLTQHSCF---DKVFFANSGAE  104 (395)
T ss_pred             CCEEEECCcChhhccCCCCCHHHHHHHHHHHHhcccc-cccc------cCHHHHHHHHHHhhccCC---CEEEEeCCcHH
Confidence            34566654      25677899999999988764211 1110      122333455555544322   38999999999


Q ss_pred             HHHHHHHHccCCC--CC-CCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCC----CCCHHHHHHhcccCceEEE
Q 017640          141 AINLVAYSWGLSN--LK-SGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDE----SPDLDKLKEMLSRKTKLVV  213 (368)
Q Consensus       141 a~~~~~~~~~~~~--~~-~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~----~~d~~~l~~~l~~~~~~v~  213 (368)
                      |++.+++......  .+ ..+.|+..+..||+.......+......+..+.|..++.    ..|++.+++.+.+++++|+
T Consensus       105 A~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aavi  184 (395)
T PRK03715        105 ANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLITDKTVAVM  184 (395)
T ss_pred             HHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCchHHHHHHHcCCCceEEE
Confidence            9999998763210  11 235788888888876433333221111111111111111    2378999999988899999


Q ss_pred             EcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEEecCcCcCCC-CcceEEEEc
Q 017640          214 IHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGP-TGIGFLFGK  283 (368)
Q Consensus       214 ~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~g~-~G~G~l~~~  283 (368)
                      ++.+++..|.+.|    +++|.++|++||+++|+|++|+ +|..    ..+.....+|+++.  +|.+|. ..+|.++++
T Consensus       185 ~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PDi~t~--gK~lg~G~p~~av~~~  262 (395)
T PRK03715        185 LEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIMTL--GKGIGGGVPLAALLAK  262 (395)
T ss_pred             EeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCceeee--hhhhhCCcceEEEEEc
Confidence            9999999999887    9999999999999999999987 3221    11222345888665  496653 237888888


Q ss_pred             ccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          284 SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       284 ~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +++.. +.+...+                  ..|   +.+....++..++++.+++   +.+.++.+++.+++.+.|+++
T Consensus       263 ~~i~~-~~~~~~~------------------~T~---~g~pl~~aaala~L~~l~~---~~l~~~~~~~g~~l~~~L~~l  317 (395)
T PRK03715        263 AEVAV-FEAGDQG------------------GTY---NGNPLMTAVGVAVISQLLA---PGFLEGVRARGEYLKEKLLEL  317 (395)
T ss_pred             ccccc-ccCCCcC------------------CCC---CCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHH
Confidence            88742 1111110                  111   3456667777888888875   346777888888888877654

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=99.70  E-value=1.4e-15  Score=142.08  Aligned_cols=282  Identities=16%  Similarity=0.166  Sum_probs=176.6

Q ss_pred             EEeccCCCCCCcHHHHHH-HHHHHHHhhcc-CCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHH
Q 017640           69 VYLDNAATSQKPIAVLKA-LQNYYEAYNSN-VHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVA  146 (368)
Q Consensus        69 i~l~~~~~~~~~~~v~~a-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~  146 (368)
                      .++..+.+...-|.+.+. +.+.-..+..+ |+  ....+++..+.+-+++..++++.|.+-. +.-+..++|.+-+.++
T Consensus        68 ~fiG~G~y~~~~P~~i~~~i~~~~ef~TaYtPY--QpEisQG~Lq~lfe~Qs~i~eLTGmdva-NaSlyd~atA~aEa~~  144 (429)
T PF02347_consen   68 SFIGAGSYTHYVPAVIDRNILSRPEFYTAYTPY--QPEISQGRLQALFEYQSMICELTGMDVA-NASLYDGATAAAEAML  144 (429)
T ss_dssp             S---CTTT-----HHHHH-HHCCHHCCCS-STT--SGGGBHHHHHHHHHHHHHHHHHHTSSEE--SEBSSCCHHHHHHHH
T ss_pred             ccccccccCceeChhhcCccccChhhhccCCCC--CcHHHHHHHHHHHHHHHHHHHhhCCCcc-CCCCCChhHHHHHHHH
Confidence            466777777555555555 44333322222 32  2235677889999999999999999732 3456678877777666


Q ss_pred             HHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccC
Q 017640          147 YSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILP  226 (368)
Q Consensus       147 ~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~  226 (368)
                      .+.+.. -+++++|+++...|+......+..++..|.+++.++.++++..|        ++++.+|++++|+ ..|.+.+
T Consensus       145 ma~r~~-~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~~~d--------~~~~a~v~vq~Pn-~~G~~ed  214 (429)
T PF02347_consen  145 MAVRAT-KRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLDEDGTTD--------DDDTAAVMVQNPN-TFGVFED  214 (429)
T ss_dssp             HHHHHH-TT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BBTTCSB---------STTEEEEEEESS--TTSB--T
T ss_pred             HHHHhc-ccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEecccccCCcc--------ccCeEEEEeecCC-CCceEee
Confidence            665321 22346999999999998877777888889999999988777766        6789999999996 5799999


Q ss_pred             HHHHHHHHHhcCCEEEEecCCcCCcccc-cCCCCCccEEEecCcCc------CCCCcceEEEEcccccccCCCcccCCcc
Q 017640          227 IEEIVHWSHDVGAKVLVDACQSVPHMVV-DVQGLDADFLVASSHKM------CGPTGIGFLFGKSDLLSAMPPFLGGGEM  299 (368)
Q Consensus       227 l~~i~~l~~~~g~~li~D~a~~~~~~~~-~~~~~~~d~~~~s~~K~------~g~~G~G~l~~~~~li~~l~~~~~g~~~  299 (368)
                      +++|.+++|++|.++++ ++......-+ ...+++.|+++++ +|.      ||+|++|++.+++++++.++..+.|-+.
T Consensus       215 ~~~i~~~~h~~gal~~~-~ad~~aL~~l~~Pge~GADI~vg~-~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~  292 (429)
T PF02347_consen  215 IKEIADIAHAAGALVIV-GADPNALGGLKSPGEYGADIVVGE-HQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTK  292 (429)
T ss_dssp             HHHHHHHHHHTT-EEEE-CGGCCGCCTC--GGGGT-SEEEEC-CTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEEEE
T ss_pred             HHHHHHHHHHcCCEEEE-ecCHHHHhCcCChhhcCccEEeeC-CCCCcccCCCCCCCeeeEEEhhhhhhhCCCceecccc
Confidence            99999999999999887 6644222212 3456799999887 664      4566699999999999999877765332


Q ss_pred             eeecccCC---CCCCCCCCCCCCCCCCHH---HHH--HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcC
Q 017640          300 ISDVFLDH---STFADPPSRFEAGTPAIG---EAI--GLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHN  365 (368)
Q Consensus       300 ~~~~~~~~---~~~~~~~~~~~~gt~~~~---~~~--a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g  365 (368)
                      ...-...+   ..-.+.+-|.+-.|.|+.   .+.  .+...+.++-..|++.+.+++..++.|+.+.|.+..+
T Consensus       293 D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~~~  366 (429)
T PF02347_consen  293 DADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKIYG  366 (429)
T ss_dssp             BCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTB
T ss_pred             cccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            11100000   011233445666677663   232  3445556677779999999999999999999988633

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.69  E-value=2.6e-15  Score=140.81  Aligned_cols=222  Identities=18%  Similarity=0.162  Sum_probs=151.3

Q ss_pred             HHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeC
Q 017640          111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL  190 (368)
Q Consensus       111 ~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~  190 (368)
                      +...++++.+++++|.+   .+++|+++|.|++++.. +   .+++||+|  +++.|...   .....+..|+.++-++.
T Consensus        71 ~s~~~lE~~va~~~G~~---~av~v~sGT~Al~ll~~-l---~l~pGDeV--psn~~f~T---t~ahIe~~Gav~vDi~~  138 (450)
T TIGR02618        71 RNFYHLERTVRELYGFK---YVVPTHQGRGAENLLSQ-I---AIKPGDYV--PGNMYFTT---TRYHQEKNGATFVDIII  138 (450)
T ss_pred             CcHHHHHHHHHHHHCCC---eEEEcCCHHHHHHHHHH-h---CCCCcCEE--CCceeHHH---HHHHHHhCCeEEEeeec
Confidence            34558999999999987   78999999999998654 3   38999977  55655443   33334566876666643


Q ss_pred             C----------CCCCCCHHHHHHhccc----CceEEEEccccccc-ccccC---HHHHHHHHHhcCCEEEEecCCcCCcc
Q 017640          191 N----------DDESPDLDKLKEMLSR----KTKLVVIHHISNML-ASILP---IEEIVHWSHDVGAKVLVDACQSVPHM  252 (368)
Q Consensus       191 ~----------~~~~~d~~~l~~~l~~----~~~~v~~~~~~n~t-G~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~  252 (368)
                      +          .+|.+|++.|+++|++    ++++|++..++|.. |..+|   +++|.++|++||+.+|.|+++.++.-
T Consensus       139 dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA  218 (450)
T TIGR02618       139 DEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENA  218 (450)
T ss_pred             ccccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhCh
Confidence            3          3488999999999986    34578888888865 78866   78999999999999999999987531


Q ss_pred             c-----------ccCC------CCCccEEEecCcCcCCCCcceEEE-EcccccccCCCcc--cCCcceeecccCCCCCCC
Q 017640          253 V-----------VDVQ------GLDADFLVASSHKMCGPTGIGFLF-GKSDLLSAMPPFL--GGGEMISDVFLDHSTFAD  312 (368)
Q Consensus       253 ~-----------~~~~------~~~~d~~~~s~~K~~g~~G~G~l~-~~~~li~~l~~~~--~g~~~~~~~~~~~~~~~~  312 (368)
                      -           .++.      ....|.+++|.+|.++.+-.|+++ .+++++++++...  .+|..             
T Consensus       219 ~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~~GG~l~~~d~~l~~k~r~~~~~~eG~~-------------  285 (450)
T TIGR02618       219 YFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVNIGGFLCMNDDEMFQSAKELVVVFEGMP-------------  285 (450)
T ss_pred             hhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCCCceEEEeCCHHHHHHHHHHhhhcCCcc-------------
Confidence            1           1110      115899999999966544237777 4667777766442  12211             


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          313 PPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       313 ~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                           ..|......+.++..+++...+   ....++....++++.+.|.+. |+
T Consensus       286 -----tyGgla~r~~~ala~gL~e~~~---~~y~~~r~~~a~~La~~L~~~-Gv  330 (450)
T TIGR02618       286 -----SYGGLAGRDMEAMAIGIREAVD---YEYIEHRVKQVRYLGDKLKAA-GV  330 (450)
T ss_pred             -----ccCchhhhhHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHC-CC
Confidence                 1223333344555555554333   244456666788888888877 54

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.68  E-value=1.4e-14  Score=139.34  Aligned_cols=262  Identities=14%  Similarity=0.149  Sum_probs=169.7

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..      ..|+.+|.+.+++.+.+.........      ....+...++.+.|++.++... +.|+|+++++
T Consensus        39 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~------~~~~~~~~~la~~L~~~~p~~~-~~v~f~~sGs  111 (443)
T PRK08360         39 EGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIHYTPI------YGFPVEPLLLAEKLIEIAPGDN-PKVSFGLSGS  111 (443)
T ss_pred             CCCEEEEccccHhhcccCCCCHHHHHHHHHHHHhccCcccc------ccCcHHHHHHHHHHHHhCCCCC-CEEEEcCCHH
Confidence            344577763      35678999999999998864222110      0112334467777888876443 3899999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHH-------cC--CEEEEEeCCCC----CC--------CCH
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK-------TG--ANLKFLNLNDD----ES--------PDL  198 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~-------~g--~~v~~v~~~~~----~~--------~d~  198 (368)
                      +|++.+++..+.  ...+..|+.....||+...........       .+  ..+..++....    +.        -++
T Consensus       112 EAve~AlklAr~--~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (443)
T PRK08360        112 DANDGAIKFARA--YTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECV  189 (443)
T ss_pred             HHHHHHHHHHHH--hcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHH
Confidence            999999997632  345567888888888765332222110       00  12333443211    00        124


Q ss_pred             HHHHHhcc-----cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCccc----ccCCCCCccEE
Q 017640          199 DKLKEMLS-----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLDADFL  264 (368)
Q Consensus       199 ~~l~~~l~-----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~~----~~~~~~~~d~~  264 (368)
                      +.+++.+.     +++++|+++..++++|.+.|    +++|.++|++||+++|+||+|. +|...    .......+|++
T Consensus       190 ~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pDii  269 (443)
T PRK08360        190 EYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPDII  269 (443)
T ss_pred             HHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCCCCCEE
Confidence            45566663     46899999999999999887    8899999999999999999987 33221    11123457876


Q ss_pred             EecCcCcCCCCc--ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCH
Q 017640          265 VASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGM  342 (368)
Q Consensus       265 ~~s~~K~~g~~G--~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~  342 (368)
                      +  ++|.+| .|  +|++++++++++.+.+...+                    + ....+....+++.++++.+++.  
T Consensus       270 t--lsK~l~-~G~pigav~~~~~i~~~~~~~~~~--------------------~-T~~~~p~~~aaa~a~l~~l~~~--  323 (443)
T PRK08360        270 T--LGKPLG-GGLPISATIGRAEIMDSLPPLAHA--------------------F-TLSGNPVASAAALAVIEEIEEK--  323 (443)
T ss_pred             E--eccccc-CCceeEEEEEcHHHHhhhcCCCCC--------------------C-CCCcCHHHHHHHHHHHHHHHHc--
Confidence            5  479887 34  89999999888776532211                    1 1134555577777888887764  


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh
Q 017640          343 QKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       343 ~~i~~~~~~l~~~l~~~l~~~  363 (368)
                       .+.++++++.+++.+.|++.
T Consensus       324 -~l~~~~~~~g~~l~~~L~~l  343 (443)
T PRK08360        324 -NLLKRAEKLGNYTKKRLEEM  343 (443)
T ss_pred             -CHHHHHHHHHHHHHHHHHHH
Confidence             35677777777777776554

>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]

Probab=99.68  E-value=2.7e-16  Score=133.53  Aligned_cols=249  Identities=16%  Similarity=0.109  Sum_probs=173.1

Q ss_pred             CCCeEEeccCCCCC-CcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHH
Q 017640           65 SKKLVYLDNAATSQ-KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN  143 (368)
Q Consensus        65 ~~~~i~l~~~~~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~  143 (368)
                      |+.+|-+|...+.. ++|...+.-. .      .+..           .-++++.++++--+..++ ++++.-|+.+.|.
T Consensus        40 G~~iv~ld~~e~~ryPdP~q~efk~-~------~~d~-----------rnk~ls~a~~~dkpLt~d-nic~GvGsDE~ID  100 (375)
T KOG0633|consen   40 GRDIVKLDANENPRYPDPEQMEFKY-V------YPDP-----------RNKRLSDALAQDKPLTSD-NICVGVGSDELID  100 (375)
T ss_pred             CCCceEeccccCCCCcCHHHccccc-c------cCCc-----------ccchhhhhcccCCCCCcc-ceEEecCcHHHHH
Confidence            57889999988774 3444332211 1      1110           011455556655555554 9999999999999


Q ss_pred             HHHHHccCCCCCCC-CEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc--CceEEEEcccccc
Q 017640          144 LVAYSWGLSNLKSG-DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR--KTKLVVIHHISNM  220 (368)
Q Consensus       144 ~~~~~~~~~~~~~g-d~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~--~~~~v~~~~~~n~  220 (368)
                      ++++..    +.|| ++|+...|.|....    .-+...+++|+.||.++++.++++++.+.+..  .++++++++|.||
T Consensus       101 ~iiR~~----c~PGkeKIl~cPPtysMY~----v~A~iNd~eVvkvpl~pdF~lnvdai~evl~~ds~iK~~F~tSPgNP  172 (375)
T KOG0633|consen  101 LIIRCV----CDPGKEKILDCPPTYSMYV----VDAAINDAEVVKVPLNPDFSLNVDAIAEVLELDSKIKCIFLTSPGNP  172 (375)
T ss_pred             HHHhhe----ecCCccceeecCCcceeEE----EEeecCCceEEEecCCCCccccHHHHHHHHhccccceEEEEcCCCCC
Confidence            999987    8898 78999999777633    23455689999999999999999999998865  5799999999999


Q ss_pred             cccccCHHHHHHHHHhc-CCEEEEecCCcC--Ccc-ccc-CCCCCccEEEecCcCcCCCCc--ceEEEEcccccccCCCc
Q 017640          221 LASILPIEEIVHWSHDV-GAKVLVDACQSV--PHM-VVD-VQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPF  293 (368)
Q Consensus       221 tG~~~~l~~i~~l~~~~-g~~li~D~a~~~--~~~-~~~-~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~~~  293 (368)
                      ||.++..+.|.++.+-. +.++++|++|--  |.. ... +.++..-+++-++||.||..|  +|+-+.+.++++.+...
T Consensus       173 tg~~ik~~di~KiLe~p~nglVVvDEAYidFsg~~S~~~lV~kYpNLivlqTlSKsfGLAGiRvG~~~~~~~ia~iln~~  252 (375)
T KOG0633|consen  173 TGSIIKEDDILKILEMPDNGLVVVDEAYIDFSGVESRMKLVKKYPNLIVLQTLSKSFGLAGIRVGYGAFPLSIAEILNRA  252 (375)
T ss_pred             CcccccHHHHHHHHhCCCCcEEEEeeeeEeeccccccchHhHhCCceeehhhhhhhcCcceeEeecccccHHHHHHHHhc
Confidence            99999999998888764 689999999862  211 111 233344566669999999999  89998888877655433


Q ss_pred             ccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          294 LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI---GMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       294 ~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~---g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      ....                       ..+.+   +-..|++.+...   .++..++-+.+...++..+|.+++++
T Consensus       253 KaPY-----------------------NiS~~---~s~~AL~Als~~n~kkme~~rdaiv~er~RL~keLt~v~~~  302 (375)
T KOG0633|consen  253 KAPY-----------------------NISVA---GSVAALAALSDSNGKKMEDVRDAIVRERERLFKELTEVPFL  302 (375)
T ss_pred             cCCc-----------------------cccch---hHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHhhcCccc
Confidence            2110                       11222   222333333322   25666777777788888888887654

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.67  E-value=1.1e-14  Score=139.53  Aligned_cols=258  Identities=16%  Similarity=0.137  Sum_probs=169.0

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..      ..|+.+|.|.+++.+.+.......   .+    ...+...++.+.|++.+.... +.++|+++++
T Consensus        73 dG~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~l~~~~---~~----~~~~~~~~lAe~L~~~~p~~~-~~v~f~~SGs  144 (442)
T TIGR03372        73 QGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQPLHS---QE----LLDPLRALLAKTLAALTPGKL-KYSFFCNSGT  144 (442)
T ss_pred             CCCEEEECCccHHhhhcCCCCHHHHHHHHHHHHhCCCcc---cc----cCCHHHHHHHHHHHHhCCCCc-CEEEEeCCch
Confidence            455688853      356889999999999988653221   11    113344567888888775433 3789999999


Q ss_pred             HHHHHHHHHccCCCC-CCCCEEEEcCCCCcccHHHHHHHHHHc---------CCEEEEEeCCCCCCCCHHHHHHhcc---
Q 017640          140 EAINLVAYSWGLSNL-KSGDEVILTVAEHHSAIVPWQLVAQKT---------GANLKFLNLNDDESPDLDKLKEMLS---  206 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~-~~gd~vl~~~~~~~s~~~~~~~~~~~~---------g~~v~~v~~~~~~~~d~~~l~~~l~---  206 (368)
                      +|++.+++..+.... +.+..|+.....||+.......+....         ...+..+|.+     |.+.+++.++   
T Consensus       145 EA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~-----d~~~~~~~l~~~~  219 (442)
T TIGR03372       145 ESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFG-----DIEAMLKALNECK  219 (442)
T ss_pred             HHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCC-----CHHHHHHHHHHHh
Confidence            999999987532111 134579999999998754333321100         0112333332     6777777664   


Q ss_pred             ---cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEEecCcCcCCC
Q 017640          207 ---RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGP  274 (368)
Q Consensus       207 ---~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~g~  274 (368)
                         .++.+|+++......|.+.|    ++++.++|++||+++|+||+|. +|..    ..+.....+|+++  ++|.+|.
T Consensus       220 ~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt--~gK~lg~  297 (442)
T TIGR03372       220 KTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDILC--LAKALGG  297 (442)
T ss_pred             cCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCCCCCeee--ehhhhcC
Confidence               35789999999999999988    9999999999999999999985 4432    1122234589887  5696653


Q ss_pred             C--cceEEEEcccccccCC--CcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH
Q 017640          275 T--GIGFLFGKSDLLSAMP--PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEV  350 (368)
Q Consensus       275 ~--G~G~l~~~~~li~~l~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~  350 (368)
                      .  .+|.+++++++.+.+.  +...+                     .....|..+.++..++|+.+++.+   +.++.+
T Consensus       298 G~~Pigavv~~~~i~~~~~~~~~~~~---------------------~T~~gnp~~~Aaa~a~L~~i~~~~---l~~~~~  353 (442)
T TIGR03372       298 GVMPIGATIATEAVFSVLFDNPFLHT---------------------TTFGGNPLACAAALATINELLEKN---LPAQAA  353 (442)
T ss_pred             CcccceEEEecHHHHHhhhccCcccc---------------------CCCCCCHHHHHHHHHHHHHHHhcc---HHHHHH
Confidence            2  3788888888876653  11111                     111347778888888999888754   445555


Q ss_pred             HHHHHHHHHHHh
Q 017640          351 KWIICSIIVIQE  362 (368)
Q Consensus       351 ~l~~~l~~~l~~  362 (368)
                      ++.+++.+.|++
T Consensus       354 ~~G~~l~~~L~~  365 (442)
T TIGR03372       354 IKGDFLLDGFQQ  365 (442)
T ss_pred             HHHHHHHHHHHH
Confidence            666666655544

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=99.67  E-value=2.3e-15  Score=129.96  Aligned_cols=258  Identities=19%  Similarity=0.159  Sum_probs=183.3

Q ss_pred             CCeEEeccCCC-C-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHH
Q 017640           66 KKLVYLDNAAT-S-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN  143 (368)
Q Consensus        66 ~~~i~l~~~~~-~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~  143 (368)
                      +.+++|-.+.+ + .-.|++.++-+++++++...+.......++  ....+.++..+|++.+.+   +.++.+++-.|+.
T Consensus        67 k~ilnFcaNnYLGLsshPeii~a~~~aleeyGaGlssvrfIcGt--q~iHk~LE~kiAqfh~rE---D~ilypscfdANa  141 (417)
T KOG1359|consen   67 KKILNFCANNYLGLSSHPEIINAGQKALEEYGAGLSSVRFICGT--QDIHKLLESKIAQFHGRE---DTILYPSCFDANA  141 (417)
T ss_pred             cceeeecccccccccCChHHHHHHHHHHHHhCCCccceeEEecc--hHHHHHHHHHHHHHhCCC---ceEEeccccccch
Confidence            45556555443 3 568899999999999988777655444544  567778999999999987   3466677778999


Q ss_pred             HHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcc----cCceEEEEccccc
Q 017640          144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS----RKTKLVVIHHISN  219 (368)
Q Consensus       144 ~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~----~~~~~v~~~~~~n  219 (368)
                      .++.++    ++|.|.|+-.+-+|.|..+..+. |++++            .+|+.+++..+.    -+-++|+.....+
T Consensus       142 g~feai----l~pedAvfSDeLNhASIIdGirL-ckry~------------h~dv~~l~~~l~~a~k~r~klv~TDg~FS  204 (417)
T KOG1359|consen  142 GAFEAI----LTPEDAVFSDELNHASIIDGIRL-CKRYR------------HVDVFDLEHCLISACKMRLKLVVTDGVFS  204 (417)
T ss_pred             HHHHHh----cChhhhhhccccccchhhhhhHH-Hhhhc------------cchhHHHHHHHHHhhhheEEEEEecceec
Confidence            999888    89999999999999999887554 55432            225666665554    3568999999999


Q ss_pred             ccccccCHHHHHHHHHhcCCEEEEecCCcCCccccc--------CCCCCccEEEecCcCcCCCCcceEEEEcccccccCC
Q 017640          220 MLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD--------VQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP  291 (368)
Q Consensus       220 ~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~--------~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~  291 (368)
                      +.|.+.|+++|.+++++||.++++|++|+.|..-..        --.-++|++.++++|.+|+.-.||..++..++.-++
T Consensus       205 MDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~GGyttgp~~li~llr  284 (417)
T KOG1359|consen  205 MDGDIAPLEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGASGGYTTGPKPLISLLR  284 (417)
T ss_pred             cCCCcccHHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCCCCCccCChhHHHHHH
Confidence            999999999999999999999999999996654211        111368999999999888665699999999887665


Q ss_pred             CcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       292 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      +.-..     +             -| +.+.+..-+.....+++.+..  -..+..+.+...+++.+..... |+|
T Consensus       285 qr~Rp-----y-------------lF-SnslppavV~~a~ka~dllm~--s~~~i~~~~a~~qrfr~~me~a-Gft  338 (417)
T KOG1359|consen  285 QRSRP-----Y-------------LF-SNSLPPAVVGMAAKAYDLLMV--SSKEIQSRQANTQRFREFMEAA-GFT  338 (417)
T ss_pred             hcCCc-----e-------------ee-cCCCChhhhhhhHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHhc-Cce
Confidence            33211     0             11 113333333344455665554  3445566666667776665543 544

>PLN00144 acetylornithine transaminase

Probab=99.67  E-value=1e-14  Score=138.00  Aligned_cols=256  Identities=16%  Similarity=0.103  Sum_probs=163.9

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..      ..|+.+|.+.+++.+.+.......   ...    ..+...++.+.|++..+.   +.|.|+++++
T Consensus        13 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~---~~~----~~~~~~~la~~l~~~~~~---~~v~f~~sGs   82 (382)
T PLN00144         13 EGKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLAHVS---NVY----HTIPQVELAKRLVASSFA---DRVFFCNSGT   82 (382)
T ss_pred             CCCEEEECCcCHHhccCCCCCHHHHHHHHHHHHhcCCcc---ccc----cCHHHHHHHHHHHhcCCC---CeEEEeCCcH
Confidence            344577763      356789999999999998642211   111    123334677777776542   3899999999


Q ss_pred             HHHHHHHHHccCCCCC-----C------CCEEEEcCCCCcccHHHHHHHHHHcCC---------EEEEEeCCCCCCCCHH
Q 017640          140 EAINLVAYSWGLSNLK-----S------GDEVILTVAEHHSAIVPWQLVAQKTGA---------NLKFLNLNDDESPDLD  199 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~-----~------gd~vl~~~~~~~s~~~~~~~~~~~~g~---------~v~~v~~~~~~~~d~~  199 (368)
                      +|++.+++..+...-+     +      +.+|+....+||+..............         .+..++.+     |++
T Consensus        83 eA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-----d~~  157 (382)
T PLN00144         83 EANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYG-----NLE  157 (382)
T ss_pred             HHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCC-----CHH
Confidence            9999999865321100     1      357898899999866443332110000         12233322     789


Q ss_pred             HHHHhccc-CceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEEecCc
Q 017640          200 KLKEMLSR-KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSH  269 (368)
Q Consensus       200 ~l~~~l~~-~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s~~  269 (368)
                      .+++.+.. ++++|+++..+||.|...+    +++|.++|++||+++|+|+++. ++..    +.+.....+|  +.+++
T Consensus       158 ~l~~~~~~~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PD--i~t~s  235 (382)
T PLN00144        158 AARKLIQKGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPD--IMTLA  235 (382)
T ss_pred             HHHHhcCCCCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCC--EEEec
Confidence            99988854 6788999888999555543    8899999999999999999987 3222    1123345678  55566


Q ss_pred             CcCCCC-cceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHH
Q 017640          270 KMCGPT-GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAY  348 (368)
Q Consensus       270 K~~g~~-G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~  348 (368)
                      |.+++. .+|++++++++.+.+.+...+.                     ....+....+++.++++++++.   .+.++
T Consensus       236 K~l~~G~pig~v~~~~~~~~~~~~~~~~~---------------------T~~~~pl~~aaa~a~l~~i~~~---~~~~~  291 (382)
T PLN00144        236 KPLAGGLPIGAVLVTEKVASAINPGDHGS---------------------TFAGGPLVCNAALAVLDKISKP---GFLAS  291 (382)
T ss_pred             ccccCCcceEEEEEcHHHHhccCCCCCCC---------------------CCCCCHHHHHHHHHHHHHHhhc---hHHHH
Confidence            976542 2999999999887766432211                     1145666677788888888763   34455


Q ss_pred             HHHHHHHHHHHHHh
Q 017640          349 EVKWIICSIIVIQE  362 (368)
Q Consensus       349 ~~~l~~~l~~~l~~  362 (368)
                      ++++.+++.+.+.+
T Consensus       292 ~~~~g~~l~~~l~~  305 (382)
T PLN00144        292 VAKKGEYLRELLRR  305 (382)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55555555554443

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=99.67  E-value=1.2e-14  Score=134.19  Aligned_cols=254  Identities=17%  Similarity=0.179  Sum_probs=178.3

Q ss_pred             CeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHH
Q 017640           67 KLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE  140 (368)
Q Consensus        67 ~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~  140 (368)
                      +--|+|+..      .|+-+|.|.+++++.+..-       ..+..+  .+..-++.+.+.+.++.-  +.|-|++++||
T Consensus        52 Gn~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~~G-------~~fg~P--te~Ei~~Aell~~~~p~~--e~vrfvnSGTE  120 (432)
T COG0001          52 GNEYIDYVLGWGPLILGHAHPAVVEAVQEQLERG-------LSFGAP--TELEVELAELLIERVPSI--EKVRFVNSGTE  120 (432)
T ss_pred             CCEeeehhccCcccccCCCCHHHHHHHHHHHHhc-------CCCCCC--CHHHHHHHHHHHHhcCcc--cEEEEecchhH
Confidence            334666632      4467899999999998862       222222  344446778888888764  48999999999


Q ss_pred             HHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcC-----------------CEEEEEeCCCCCCCCHHHHHH
Q 017640          141 AINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTG-----------------ANLKFLNLNDDESPDLDKLKE  203 (368)
Q Consensus       141 a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g-----------------~~v~~v~~~~~~~~d~~~l~~  203 (368)
                      |.+.+++..+  ....+|+|+..+.+||+..+.+..-+. .|                 ..++.+|.+     |++.+++
T Consensus       121 AtmsAiRlAR--a~TgR~kIikF~G~YHG~~D~~lv~ag-sg~~t~g~p~s~Gvp~~~a~~ti~~~yN-----D~~al~~  192 (432)
T COG0001         121 ATMSAIRLAR--AYTGRDKIIKFEGCYHGHSDSLLVKAG-SGAATLGSPSSPGVPADVAKHTLVLPYN-----DLEALEE  192 (432)
T ss_pred             HHHHHHHHHH--HhhCCCeEEEEcCCCCCCccHHHhhcC-cCcccCCCCCCCCCChhhhccEEEecCC-----CHHHHHH
Confidence            9999999764  367789999999999998877665322 11                 123344444     8999999


Q ss_pred             hccc---CceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCcCCcccc----cCCCCCccEEEecCcCcC
Q 017640          204 MLSR---KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQSVPHMVV----DVQGLDADFLVASSHKMC  272 (368)
Q Consensus       204 ~l~~---~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~~~~~~~----~~~~~~~d~~~~s~~K~~  272 (368)
                      +++.   +..+|+++.....-|.+.|    +++|.++|++||+++|+||+......++    +.....+|+.+.+  |..
T Consensus       193 ~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~gi~PDlttlG--KiI  270 (432)
T COG0001         193 AFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYYGVEPDLTTLG--KII  270 (432)
T ss_pred             HHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcccccccCcCcchhhhh--hhh
Confidence            8875   6799999999999999988    8999999999999999999987333322    2223457877766  955


Q ss_pred             C-CCcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHhCHHHHHHHH
Q 017640          273 G-PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGT--PAIGEAIGLGAAIDYLSTIGMQKIHAYE  349 (368)
Q Consensus       273 g-~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt--~~~~~~~a~~~al~~~~~~g~~~i~~~~  349 (368)
                      | +-.+|.+.+++++.+.+.|.-                    ..|..||  -|..+++|-.++++.+.+.  +...+++
T Consensus       271 GGGlP~ga~gGr~eiM~~~~p~g--------------------~vyqaGT~sgnplamaAG~atl~~l~~~--~~~y~~l  328 (432)
T COG0001         271 GGGLPIGAFGGRAEIMEQLAPLG--------------------PVYQAGTLSGNPLAMAAGLATLEELMTE--EGVYERL  328 (432)
T ss_pred             cCCcceeeeccHHHHHhhhCCCC--------------------CccccCCCCCcHHHHHHHHHHHHHHHhc--ccHHHHH
Confidence            4 334899999999988665442                    2344455  4555666667777777662  2255666


Q ss_pred             HHHHHHHHHHHHhh
Q 017640          350 VKWIICSIIVIQER  363 (368)
Q Consensus       350 ~~l~~~l~~~l~~~  363 (368)
                      .++.+.|.+.|+++
T Consensus       329 ~~~~~~L~~gl~~~  342 (432)
T COG0001         329 DALGERLAEGLRAA  342 (432)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66666666666543

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=99.67  E-value=3.2e-15  Score=135.70  Aligned_cols=167  Identities=19%  Similarity=0.228  Sum_probs=129.1

Q ss_pred             HHHHHHHHHcC----CC--CCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEE
Q 017640          115 LARKKVAAFIN----AS--DSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL  188 (368)
Q Consensus       115 ~~r~~la~~~~----~~--~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v  188 (368)
                      ++...+.++.+    .+  .+.+|++|+|.|.++..+++.+    +++||.|++....|++....+    +..|++++.|
T Consensus       104 eLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~----~N~gd~vlie~~ty~~AL~s~----~a~gv~~ipv  175 (472)
T KOG0634|consen  104 ELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTL----INRGDHVLIEEYTYPSALQSM----EALGVKIIPV  175 (472)
T ss_pred             HHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHh----hcCCCceEEecccchHHHHhc----cccCceEEec
Confidence            44444444444    33  2248999999999999999998    999999999999888865444    4459999999


Q ss_pred             eCCCCCCCCHHHHHHhccc---------Cce-EEEEcccccccccccCH---HHHHHHHHhcCCEEEEecCCcCCcc---
Q 017640          189 NLNDDESPDLDKLKEMLSR---------KTK-LVVIHHISNMLASILPI---EEIVHWSHDVGAKVLVDACQSVPHM---  252 (368)
Q Consensus       189 ~~~~~~~~d~~~l~~~l~~---------~~~-~v~~~~~~n~tG~~~~l---~~i~~l~~~~g~~li~D~a~~~~~~---  252 (368)
                      +.+.+|. +++.|++.+..         +++ +.+++..+||||..+++   ++|.++|++|+++||.|+.|.+-..   
T Consensus       176 ~md~~Gi-~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~Lq~~~y  254 (472)
T KOG0634|consen  176 KMDQDGI-DPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYFLQMNTY  254 (472)
T ss_pred             cccCCCC-CHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccceeecccc
Confidence            9877776 89999988753         244 55699999999999994   5999999999999999999873111   


Q ss_pred             -----------------------cccCCCCCccEEEecCcCcCCCCc-ceEEEEcccccccC
Q 017640          253 -----------------------VVDVQGLDADFLVASSHKMCGPTG-IGFLFGKSDLLSAM  290 (368)
Q Consensus       253 -----------------------~~~~~~~~~d~~~~s~~K~~g~~G-~G~l~~~~~li~~l  290 (368)
                                             .++++-.+..+-..||||.++|.- +||+-+++-+++++
T Consensus       255 ~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~it~~~~~l~ri  316 (472)
T KOG0634|consen  255 NPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGWITGNSLFLKRI  316 (472)
T ss_pred             CCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhcCcceeEEeecCHHHHHHH
Confidence                                   112223356678889999999865 99999998776654

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.67  E-value=1.8e-14  Score=138.82  Aligned_cols=261  Identities=12%  Similarity=0.086  Sum_probs=168.1

Q ss_pred             CeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHH
Q 017640           67 KLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE  140 (368)
Q Consensus        67 ~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~  140 (368)
                      +.-|+|..      ..|+.+|.+.+++.+.++.+...+. +..     ..+...++.+.|++++.-.. +.|+|++++++
T Consensus        42 G~~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~~~~~~~-~~~-----~~~~~~~la~~L~~~~~~~~-~~v~f~~SGse  114 (433)
T PRK08117         42 GKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGPS-GVI-----YYESILKLAEELAEITPGGL-DCFFFSNSGAE  114 (433)
T ss_pred             CCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccc-ccc-----CCHHHHHHHHHHHHhCCCCC-CEEEEeCcHHH
Confidence            33566653      2456899999999999886422211 011     13445578888999884322 38999999999


Q ss_pred             HHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHH----H---cC---CEEEEEeCCCCCC------------CCH
Q 017640          141 AINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQ----K---TG---ANLKFLNLNDDES------------PDL  198 (368)
Q Consensus       141 a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~----~---~g---~~v~~v~~~~~~~------------~d~  198 (368)
                      |+..+++..+.  ...+..|+..+..||+.......+..    .   .+   ..+..+|....+.            -|+
T Consensus       115 A~e~AlklAr~--~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (433)
T PRK08117        115 AIEGALKLAKH--VTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECL  192 (433)
T ss_pred             HHHHHHHHHHH--hcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHH
Confidence            99999986532  23456788888888875543222210    0   00   0123333321110            145


Q ss_pred             HHHHHhcc-----cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc--cc--cCCCCCccEE
Q 017640          199 DKLKEMLS-----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM--VV--DVQGLDADFL  264 (368)
Q Consensus       199 ~~l~~~l~-----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~--~~--~~~~~~~d~~  264 (368)
                      +.+++.++     .++.+|+++.+....|.+.|    +++|.++|++||+++|+||+|+ +|..  .+  +.....+|+ 
T Consensus       193 ~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv~pDi-  271 (433)
T PRK08117        193 RDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGVVPDI-  271 (433)
T ss_pred             HHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhcCCCCCE-
Confidence            66666653     35789999999999999988    9999999999999999999988 2111  11  111224665 


Q ss_pred             EecCcCcCCCCc--ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCH
Q 017640          265 VASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGM  342 (368)
Q Consensus       265 ~~s~~K~~g~~G--~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~  342 (368)
                       .+++|.+| .|  +|++++++++++.+.....+.                  .   .+.+..+.++..++++.+++.  
T Consensus       272 -~t~sK~lg-~G~pigav~~~~~i~~~~~~~~~~~------------------T---~~~np~~~aaa~a~L~~l~~~--  326 (433)
T PRK08117        272 -MTIAKGIA-SGLPLSAVVASKELMEQWPLGSHGT------------------T---FGGNPVACAAALATLEVIKEE--  326 (433)
T ss_pred             -eehhhhcc-CCCcceeEEEcHHHHhhccCCCCCC------------------C---CCcCHHHHHHHHHHHHHHHhc--
Confidence             57779877 34  899999998877664322111                  1   145677778888888877653  


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh
Q 017640          343 QKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       343 ~~i~~~~~~l~~~l~~~l~~~  363 (368)
                       .+.++++++.+++.+.|.++
T Consensus       327 -~l~~~~~~~g~~l~~~L~~l  346 (433)
T PRK08117        327 -KLLDNANEMGAYALERLEVL  346 (433)
T ss_pred             -cHHHHHHHHHHHHHHHHHHH
Confidence             45666777777777776654

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=99.67  E-value=8.1e-15  Score=131.22  Aligned_cols=262  Identities=19%  Similarity=0.217  Sum_probs=184.2

Q ss_pred             CCCCCCcHHHHHHHHHHHHHhhccCCC--CcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEe-CCHHHHHHHHHHHcc
Q 017640           74 AATSQKPIAVLKALQNYYEAYNSNVHR--GIHFLSAKATDEYELARKKVAAFINASDSGEIVFT-KNATEAINLVAYSWG  150 (368)
Q Consensus        74 ~~~~~~~~~v~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t-~g~t~a~~~~~~~~~  150 (368)
                      +++..+|++|++.+++.+..+.+...+  -..+.+..+.....+.++.+.++++.|+++.|+|. .|+|....++...+ 
T Consensus        11 aGPa~lp~~vL~~a~~e~~~~~g~g~svme~SHRsk~~~~v~~~a~~~lreLl~iPd~Y~VlflqGGat~qf~~~p~nL-   89 (365)
T COG1932          11 AGPAALPPEVLQQAQKELLDWNGLGMSVMEISHRSKEFKNVLEEAEKDLRELLNIPDDYKVLFLQGGATGQFAMAPMNL-   89 (365)
T ss_pred             CCcccCCHHHHHHHHHHHhhhccCCcceeeeccccHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCccHHHHHHHHHhh-
Confidence            345568999999998888887651100  02233455678889999999999999999999887 46688888888887 


Q ss_pred             CCCCCCCCE--EEEcCCCCcccHHHHHHHHHHcCC--EEEEEeCCCC---CCCCHHHHHHhcccCceEEEEccccccccc
Q 017640          151 LSNLKSGDE--VILTVAEHHSAIVPWQLVAQKTGA--NLKFLNLNDD---ESPDLDKLKEMLSRKTKLVVIHHISNMLAS  223 (368)
Q Consensus       151 ~~~~~~gd~--vl~~~~~~~s~~~~~~~~~~~~g~--~v~~v~~~~~---~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~  223 (368)
                         +.++..  |.....+..+    .+ .++..+.  ++..+.....   ..++++..+  +.++...|.+|+..+.+|+
T Consensus        90 ---l~~~~~~yv~~g~Ws~~a----~~-eA~~~~~~~~~~~~~~~~~~~~~iP~~~~~~--~~~~~ayv~~~~NeTi~Gv  159 (365)
T COG1932          90 ---LGKRGTDYVDTGAWSEFA----IK-EAKKVGKQPKLIDARIEEAGYGSIPDLSKWD--FSDNDAYVHFCWNETISGV  159 (365)
T ss_pred             ---hcccCceeEeeeehhHhH----HH-HHHHhcccccccccceeccCccCCCChhhcc--cCCCccEEEEecCCcccce
Confidence               554433  4444432222    23 2344453  2222221222   233444333  3344566899999999999


Q ss_pred             ccC-HHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCcc-cCCccee
Q 017640          224 ILP-IEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFL-GGGEMIS  301 (368)
Q Consensus       224 ~~~-l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~-~g~~~~~  301 (368)
                      .+| ...+.     .+.++++|.+..+...++|+.+  .|++.++.+|.+||.|++++++|+++++++++.. +.-    
T Consensus       160 ~v~~~p~~~-----~~~~~v~D~SS~ilsr~iDvsk--~dviyagaQKnlGpaGltvvIvr~~~l~r~~~~~~P~i----  228 (365)
T COG1932         160 EVPELPDIG-----SDGLLVADASSAILSRPIDVSK--YDVIYAGAQKNLGPAGLTVVIVRPDLLERAESYTLPSI----  228 (365)
T ss_pred             EccCCCCCC-----CCceEEEecccHHhcCCCChhH--cceEEEehhhccCccceEEEEEcHHHHhcccccCCchH----
Confidence            988 23221     1278999999999888888876  8899999999999999999999999999887652 110    


Q ss_pred             ecccCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHhh
Q 017640          302 DVFLDHSTFA-DPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       302 ~~~~~~~~~~-~~~~~~~~gt~~~~~~~a~~~al~~~~~~-g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                            ..|. ...+..-..||++..++-+...+++++.. |++.+.++..+.++.+++++.+.
T Consensus       229 ------f~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~s  286 (365)
T COG1932         229 ------FDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKS  286 (365)
T ss_pred             ------hhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC
Confidence                  1111 11222334589999999999999999987 79999999999999999999887

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.66  E-value=1.2e-14  Score=139.63  Aligned_cols=269  Identities=10%  Similarity=0.096  Sum_probs=173.3

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++--|+|..      ..|+.+|.+.+++.+.+.........+  .    ..+...++.+.|++.+.... +.+.|+++++
T Consensus        40 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~--~----~~~~~~~la~~l~~~~p~~~-~~v~f~~sGs  112 (423)
T PRK05964         40 DGRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDHVIFAG--F----THEPAERLAQRLVALTPGGL-DHVFFSDSGS  112 (423)
T ss_pred             CCCEEEEcchhHHhccCCCCCHHHHHHHHHHHhhCCCccccc--c----CCHHHHHHHHHHHHhCCCCC-CEEEEeCCcH
Confidence            344677764      356789999999999987642111000  0    12334467888888875322 3899999999


Q ss_pred             HHHHHHHHHccCCC----CCCCCEEEEcCCCCcccHHHHHHHHHHcC---------CEEEEEeCCCC--CCCCHHHHHHh
Q 017640          140 EAINLVAYSWGLSN----LKSGDEVILTVAEHHSAIVPWQLVAQKTG---------ANLKFLNLNDD--ESPDLDKLKEM  204 (368)
Q Consensus       140 ~a~~~~~~~~~~~~----~~~gd~vl~~~~~~~s~~~~~~~~~~~~g---------~~v~~v~~~~~--~~~d~~~l~~~  204 (368)
                      +|++.+++..+...    -..+.+|+..+.+||+.......+.....         ..+..++...+  ...+++.+++.
T Consensus       113 eA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~  192 (423)
T PRK05964        113 VAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEAL  192 (423)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHHH
Confidence            99999998753210    02346899999999987655443321100         01223333211  11127788888


Q ss_pred             cc---cCceEEEEcc-cccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEEecCcCc
Q 017640          205 LS---RKTKLVVIHH-ISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKM  271 (368)
Q Consensus       205 l~---~~~~~v~~~~-~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s~~K~  271 (368)
                      +.   +++.+|+++. +++..|...+    +++|.++|++||+++|+||+|. +|..    ..+.....+|+++.  +|.
T Consensus       193 l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~v~pDi~~~--~K~  270 (423)
T PRK05964        193 LEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFACEQAGVSPDIMCL--SKG  270 (423)
T ss_pred             HHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhHHHhcCCCCCeeee--ehh
Confidence            84   3567888887 6888888876    8999999999999999999985 4321    11222345787655  597


Q ss_pred             CCCC--cceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHhCHHHHHH
Q 017640          272 CGPT--GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAG--TPAIGEAIGLGAAIDYLSTIGMQKIHA  347 (368)
Q Consensus       272 ~g~~--G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--t~~~~~~~a~~~al~~~~~~g~~~i~~  347 (368)
                      ++..  .+|+++.++++.+.+.+.. ++..                .+..+  +.+..+.+++.++++.+++.   .+.+
T Consensus       271 l~gG~~p~~av~~~~~i~~~~~~~~-~~~~----------------~~~~~T~~~np~~~aaa~a~l~~l~~~---~~~~  330 (423)
T PRK05964        271 LTGGYLPLAATLCTAEIFEAFYSDD-RAKA----------------FMHSPSYTANPLACAAANASLDLFEDE---PVLE  330 (423)
T ss_pred             hhcCcccceEEEEcHHHHHhhhcCC-cccc----------------cccCCCCCcCHHHHHHHHHHHHHHHhc---CHHH
Confidence            6543  3888999999887664210 0000                01112  36777888888888888763   3567


Q ss_pred             HHHHHHHHHHHHHHhh
Q 017640          348 YEVKWIICSIIVIQER  363 (368)
Q Consensus       348 ~~~~l~~~l~~~l~~~  363 (368)
                      ++.++.+++.+.|+++
T Consensus       331 ~~~~~g~~l~~~l~~l  346 (423)
T PRK05964        331 RVAALSAGLAEGLEPF  346 (423)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            8888888888877665

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=99.66  E-value=5.9e-16  Score=133.85  Aligned_cols=207  Identities=15%  Similarity=0.190  Sum_probs=155.2

Q ss_pred             eEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHH
Q 017640           68 LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAY  147 (368)
Q Consensus        68 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~  147 (368)
                      .+-|.....+.+..++++++.++.-.        ...++  ..+...++++..|+++|.+..   +|++++|.++.++++
T Consensus        23 ~vDLRSDTvT~PTdeMr~am~eA~vg--------DdVyG--eD~tt~rLE~~vA~l~GKEAg---LFv~SGTmgNllaIm   89 (384)
T KOG1368|consen   23 SVDLRSDTVTVPTDEMRRAMAEASVG--------DDVYG--EDPTTNRLEQRVAELFGKEAG---LFVPSGTMGNLLAIM   89 (384)
T ss_pred             ccccccccccCChHHHHHHHhhcccC--------ccccc--CCccHHHHHHHHHHHhCccce---eeecccccccHHHHH
Confidence            45666677778888888888765432        11111  133445899999999999854   888888999999998


Q ss_pred             HccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc--------CceEEEEccccc
Q 017640          148 SWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR--------KTKLVVIHHISN  219 (368)
Q Consensus       148 ~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~--------~~~~v~~~~~~n  219 (368)
                      .=   --++|.+|++.+.+|--.+.. ..++...|+.++.+...+|+.+|++++|+++..        -+++||+++.+|
T Consensus        90 ~H---c~~rg~eii~gd~~HI~~~E~-gg~s~l~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~  165 (384)
T KOG1368|consen   90 VH---CHQRGSEIIVGDRAHIHRYEQ-GGISQLAGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHN  165 (384)
T ss_pred             HH---hcCCCceEEeccchheeehhc-cChhhhccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeecccc
Confidence            74   145899999999988876643 234456688999999889999999999999973        369999999999


Q ss_pred             ccc-cccCH---HHHHHHHHhcCCEEEEecCCcCCc-----ccccCCCCCccEEEecCcCcCCCCcceEEEEcccccccC
Q 017640          220 MLA-SILPI---EEIVHWSHDVGAKVLVDACQSVPH-----MVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAM  290 (368)
Q Consensus       220 ~tG-~~~~l---~~i~~l~~~~g~~li~D~a~~~~~-----~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l  290 (368)
                      .+| .++|+   ++|.++|++||+.++.|++--+-.     .++.---...|.+...+||.+|.|=..++++++++|++.
T Consensus       166 ~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglgAPVGSViVG~k~FI~kA  245 (384)
T KOG1368|consen  166 NCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSICLSKGLGAPVGSVIVGSKDFIDKA  245 (384)
T ss_pred             ccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCCcccEEEccHHHHHHH
Confidence            888 99995   577889999999999999943211     122111124788888899988866457888899999765


Q ss_pred             C
Q 017640          291 P  291 (368)
Q Consensus       291 ~  291 (368)
                      +
T Consensus       246 ~  246 (384)
T KOG1368|consen  246 R  246 (384)
T ss_pred             H
Confidence            4

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.66  E-value=5.4e-14  Score=134.41  Aligned_cols=262  Identities=13%  Similarity=0.099  Sum_probs=166.2

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC--CCCcEEE-eC
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS--DSGEIVF-TK  136 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~--~~~~v~~-t~  136 (368)
                      ++.-|+|..      ..|+.+|.+.+++.+.+..... .+.. .    ...+...++.+.|++.+..+  ..+.++| ++
T Consensus        33 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~-~~~~-~----~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~  106 (412)
T TIGR02407        33 DGKEYIDFFAGAGALNYGHNNPKLKQALIDYLADDGI-IHSL-D----MATEAKREFLETFNEIILKPRGLDYKVQFPGP  106 (412)
T ss_pred             CCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhccc-eecc-c----cCcHHHHHHHHHHHHhccCccCCCceEEEeCC
Confidence            445677763      3568899999999999875311 1110 0    01233446677777764222  1124666 48


Q ss_pred             CHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHH------cC---CEEEEEeCCCCC---CCCHHHHHHh
Q 017640          137 NATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK------TG---ANLKFLNLNDDE---SPDLDKLKEM  204 (368)
Q Consensus       137 g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~------~g---~~v~~v~~~~~~---~~d~~~l~~~  204 (368)
                      ++++|++.+++..+.  ...+.+|+.....||+...........      .+   ..+..+|...-.   .-+++.+++.
T Consensus       107 sGseA~e~AlklAr~--~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~  184 (412)
T TIGR02407       107 TGTNAVESALKLARK--VTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKL  184 (412)
T ss_pred             CchHHHHHHHHHHhh--hcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHH
Confidence            999999999997642  344568999999999876544433211      11   122334432100   0246678887


Q ss_pred             cc------cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEEecCc
Q 017640          205 LS------RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSH  269 (368)
Q Consensus       205 l~------~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s~~  269 (368)
                      +.      +++.+|+++..++..|.+.|    +++|.++|++||+++|+|++++ +|..    ..+.....+|+++.  +
T Consensus       185 ~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~PDi~~~--~  262 (412)
T TIGR02407       185 LEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEPDIVCL--S  262 (412)
T ss_pred             HHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCCCEEEe--c
Confidence            75      35689999999999998655    8999999999999999999986 4332    22333457898765  4


Q ss_pred             CcCCCCc--ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HHHhCHHHHH
Q 017640          270 KMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY-LSTIGMQKIH  346 (368)
Q Consensus       270 K~~g~~G--~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~-~~~~g~~~i~  346 (368)
                      |.+|+.|  +|++++++++ +.+.+...+                     ...+.+..+.++..++++. +.+   ..+.
T Consensus       263 K~lg~~G~pigav~~~~~~-~~~~~~~~~---------------------~T~~gnpl~~aaa~a~l~~~i~~---~~l~  317 (412)
T TIGR02407       263 KSISGYGLPLALTLIKPEL-DVWKPGEHN---------------------GTFRGNNLAFVTATAALEYYWSD---DAFE  317 (412)
T ss_pred             hhccCCccceeEEEEchhh-hccCCCccC---------------------CCCCccHHHHHHHHHHHHHHhcc---cHHH
Confidence            9887755  8999998875 444322111                     1114566666666777774 443   4556


Q ss_pred             HHHHHHHHHHHHHHHh
Q 017640          347 AYEVKWIICSIIVIQE  362 (368)
Q Consensus       347 ~~~~~l~~~l~~~l~~  362 (368)
                      +++.++.+++.+.+++
T Consensus       318 ~~~~~~g~~l~~~l~~  333 (412)
T TIGR02407       318 KAVQRKSEIIQERLDR  333 (412)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7777777777766654

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.66  E-value=1e-16  Score=144.79  Aligned_cols=192  Identities=17%  Similarity=0.245  Sum_probs=142.7

Q ss_pred             CcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCC
Q 017640           79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD  158 (368)
Q Consensus        79 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd  158 (368)
                      +.+.+.+++.+...        +..  +|+..+...++++.+++++|.+   ..+|++++|.|+.++++++    ++|++
T Consensus         7 ~~~~m~~a~~~a~~--------gd~--~Yg~D~~~~~l~~~i~~l~g~e---~a~f~~sGT~An~~al~~~----~~~~~   69 (290)
T PF01212_consen    7 PTPAMLEAMAAANV--------GDD--AYGEDPTTARLEERIAELFGKE---AALFVPSGTMANQLALRAH----LRPGE   69 (290)
T ss_dssp             S-HHEEHHHHHTTS--------B-C--CTTSSHHHHHHHHHHHHHHTSS---EEEEESSHHHHHHHHHHHH----HHTTE
T ss_pred             CCHHHHHHHHcccc--------CCc--ccCCChhHHHHHHHHHHHcCCC---EEEEeCCCChHHHHHHHHH----HhcCC
Confidence            56677777743321        111  2444677789999999999997   5579999999999999998    78999


Q ss_pred             EEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc------CceEEEEccccccc-ccccC---HH
Q 017640          159 EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR------KTKLVVIHHISNML-ASILP---IE  228 (368)
Q Consensus       159 ~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~~n~t-G~~~~---l~  228 (368)
                      .|++..+.|...... .......|.+++.++..++|.+|+++|++.+..      ++++|++++++|.. |.+++   ++
T Consensus        70 ~vi~~~~aHi~~~E~-ga~~~~~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~  148 (290)
T PF01212_consen   70 SVICADTAHIHFDET-GAIEELSGAKLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELR  148 (290)
T ss_dssp             EEEEETTEHHHHSST-THHHHHTTCEEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHH
T ss_pred             ceeccccceeeeecc-chhhHhcCcEEEECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHH
Confidence            999999877654332 222345799999999876699999999999865      57999999999874 77888   67


Q ss_pred             HHHHHHHhcCCEEEEecCCc------CCcccccCCCCCccEEEecCcCcCCCCcceEEEEccccccc
Q 017640          229 EIVHWSHDVGAKVLVDACQS------VPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSA  289 (368)
Q Consensus       229 ~i~~l~~~~g~~li~D~a~~------~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~  289 (368)
                      +|.++||+||+.++.|++--      .+..+-++. .++|.+..|++|.+|.++.++++.++++++.
T Consensus       149 ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~-~~~D~v~~~~tK~~g~~~Gavl~~~~~~i~~  214 (290)
T PF01212_consen  149 AISELAREHGLPLHMDGARLANAAAALGVSLAEIA-AGADSVSFGGTKNGGAPGGAVLAGNKEFIAK  214 (290)
T ss_dssp             HHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHH-TTSSEEEEETTSTT-SSSEEEEEESHHHHHH
T ss_pred             HHHHHHHhCceEEEEehhhHHHhhhcccccHHHHh-hhCCEEEEEEEcccccccceEEEechHHHHH
Confidence            88889999999999999932      122222232 3699999999998888777999999997654

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.66  E-value=3.6e-14  Score=136.12  Aligned_cols=262  Identities=14%  Similarity=0.154  Sum_probs=166.7

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++--|+|..      ..|+.+|.+.+++++.+......   +..   ....+...++.+.|++++.....+.++|+++++
T Consensus        31 dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~~~~~~---~~~---~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGs  104 (420)
T TIGR00700        31 DGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTHT---CFM---VTPYEGYVALAEKLNRIAPGSGPKKSVFFNSGA  104 (420)
T ss_pred             CCCEEEECccCHHhccCCCCCHHHHHHHHHHHHhccCc---ccc---ccCChHHHHHHHHHHHhCCCCCCCEEEEeCCcH
Confidence            344577763      25678999999999998864211   100   011233346777788877532223899999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHH-----cC-----CEEEEEeCCCCCC-------C----CH
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK-----TG-----ANLKFLNLNDDES-------P----DL  198 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~-----~g-----~~v~~v~~~~~~~-------~----d~  198 (368)
                      +|++.+++..+.  ...+..|+....+||+.......+...     .+     ..+..++......       .    ++
T Consensus       105 eA~e~AlklAr~--~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (420)
T TIGR00700       105 EAVENAVKIARS--YTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGEL  182 (420)
T ss_pred             HHHHHHHHHHHH--hcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHH
Confidence            999999987532  344567888899999876544433210     01     0122333321000       0    24


Q ss_pred             HHHHHhcc-----cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEE
Q 017640          199 DKLKEMLS-----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFL  264 (368)
Q Consensus       199 ~~l~~~l~-----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~  264 (368)
                      +.+++.+.     +++.+|+++..+..+|.+.|    +++|.++|++||+++|+||+|. ++..    ..+.....+|++
T Consensus       183 ~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~~pDi~  262 (420)
T TIGR00700       183 AAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEGPEPDLI  262 (420)
T ss_pred             HHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhhcCCCCCEE
Confidence            56666652     46799999999999999887    8999999999999999999987 3322    112223357766


Q ss_pred             EecCcCcCCCCc--ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCH
Q 017640          265 VASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGM  342 (368)
Q Consensus       265 ~~s~~K~~g~~G--~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~  342 (368)
                      +  ++|.++ .|  +|++++++++++.+.+...+.                     ..+.+..+.+++.++++.+.+.+ 
T Consensus       263 ~--lsK~l~-~G~pig~v~~~~~i~~~~~~~~~~~---------------------T~~~~pl~~aaa~a~l~~l~~~~-  317 (420)
T TIGR00700       263 T--TAKSLA-DGLPLSGVTGRAEIMDAPAPGGLGG---------------------TYAGNPLACAAALAVLAIIESEG-  317 (420)
T ss_pred             E--eecccc-CCcceEEEEecHHHHhhcCCCCcCC---------------------CCCcCHHHHHHHHHHHHHHHhcc-
Confidence            5  679777 34  999999999887765432211                     11456667777778888877643 


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 017640          343 QKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       343 ~~i~~~~~~l~~~l~~~l~~  362 (368)
                        +.++..++.+++.+.|.+
T Consensus       318 --~~~~~~~~g~~l~~~L~~  335 (420)
T TIGR00700       318 --LIERARQIGRLVTDRLTT  335 (420)
T ss_pred             --HHHHHHHHHHHHHHHHHH
Confidence              444555555555555543

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.65  E-value=3.4e-14  Score=136.14  Aligned_cols=263  Identities=14%  Similarity=0.170  Sum_probs=171.0

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..+      .|+.+|.+.+++.+.++....... . .    ...+...++.+.+++++.....+.++|+++++
T Consensus        38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~-~-~----~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGs  111 (421)
T PRK06777         38 EGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTHTAY-Q-I----VPYASYVTLAERINALAPIDGPAKTAFFTTGA  111 (421)
T ss_pred             CCCEEEEcccCHHhhccCCCCHHHHHHHHHHHhhcccccc-c-c----cCChHHHHHHHHHHHhCCCCCCceEEEeCCcH
Confidence            3456777633      467899999999999886421111 0 0    01223346777788877543224889999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHH-cCC---------EEEEEeCCCCC-----CCCHHHHHHh
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK-TGA---------NLKFLNLNDDE-----SPDLDKLKEM  204 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~-~g~---------~v~~v~~~~~~-----~~d~~~l~~~  204 (368)
                      +|++.+++..+.  ...+..|+.....||+.......+... ...         .+..++.....     ..+++.+++.
T Consensus       112 eA~e~AlklAr~--~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~  189 (421)
T PRK06777        112 EAVENAVKIARA--YTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERL  189 (421)
T ss_pred             HHHHHHHHHHHH--hhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHH
Confidence            999999987632  344567888899999876544332110 000         11222221110     1135667777


Q ss_pred             cc-----cCceEEEEcccccccccc-cC---HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEEecCcC
Q 017640          205 LS-----RKTKLVVIHHISNMLASI-LP---IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHK  270 (368)
Q Consensus       205 l~-----~~~~~v~~~~~~n~tG~~-~~---l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s~~K  270 (368)
                      +.     +++.+|+++..++..|.. .|   +++|.++|++||+++|+||+|. +|..    ........+|++  +++|
T Consensus       190 ~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~pDiv--~~sK  267 (421)
T PRK06777        190 FKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDLI--TMAK  267 (421)
T ss_pred             HHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCCCCCEE--eeeh
Confidence            64     356899999999999965 44   8999999999999999999987 3221    111112357866  5679


Q ss_pred             cCCCCc--ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHH
Q 017640          271 MCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAY  348 (368)
Q Consensus       271 ~~g~~G--~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~  348 (368)
                      .+| .|  +|++++++++++.+.+...+.                     ....+....++..++++.+++   +.+.++
T Consensus       268 ~l~-~G~pigav~~~~~i~~~~~~~~~~~---------------------T~~~~p~~~aaa~a~L~~~~~---~~l~~~  322 (421)
T PRK06777        268 SLG-GGMPISAVVGRAEVMDAPAPGGLGG---------------------TYAGNPLAVAAALAVLDVIAE---EKLCQR  322 (421)
T ss_pred             hhc-CCCceEEEEEcHHHHhccCCCCCCC---------------------CCCcCHHHHHHHHHHHHHHHh---ccHHHH
Confidence            777 34  899999999887765432211                     114577777888888887765   456778


Q ss_pred             HHHHHHHHHHHHHhh
Q 017640          349 EVKWIICSIIVIQER  363 (368)
Q Consensus       349 ~~~l~~~l~~~l~~~  363 (368)
                      .+++.+++.+.|+++
T Consensus       323 ~~~~g~~l~~~L~~l  337 (421)
T PRK06777        323 ALILGAHLVEVLEKA  337 (421)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888888888877764

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.65  E-value=2.2e-14  Score=138.29  Aligned_cols=262  Identities=16%  Similarity=0.143  Sum_probs=170.9

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..      ..|+.+|.+.+++.+.+.......   ..    ...+...++.+.|++.+.... +.+.|+++++
T Consensus        80 dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l~~~~---~~----~~~~~~~~lae~L~~~~p~~~-~~v~f~~SGs  151 (459)
T PRK11522         80 QGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHS---QE----LLDPLRAMLAKTLAALTPGKL-KYSFFCNSGT  151 (459)
T ss_pred             CCCEEEECCcCHHhhhcCCCCHHHHHHHHHHHhhCcccc---cc----cCCHHHHHHHHHHHHhCCCCC-CEEEEeCCch
Confidence            344577763      356789999999999988652221   11    113444567888888775433 3899999999


Q ss_pred             HHHHHHHHHccCCCCCC-CCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC----CCCCHHHHHHhcc------cC
Q 017640          140 EAINLVAYSWGLSNLKS-GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD----ESPDLDKLKEMLS------RK  208 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~-gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~----~~~d~~~l~~~l~------~~  208 (368)
                      +|++.+++..+...-++ +..|+.....||+..............+..+.|..++    ...|.+++++.++      .+
T Consensus       152 EAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~  231 (459)
T PRK11522        152 ESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKKTGDD  231 (459)
T ss_pred             HHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHhhccCCc
Confidence            99999998753211112 3468888889998654333321110001001111111    0116788888775      35


Q ss_pred             ceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEEecCcCcCCCC--cc
Q 017640          209 TKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGPT--GI  277 (368)
Q Consensus       209 ~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~g~~--G~  277 (368)
                      +.+|+++......|.+.|    ++++.++|++||+++|+||+|. +|..    ..+.....+|+++.  +|.+|..  .+
T Consensus       232 iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~--gK~lggG~~Pi  309 (459)
T PRK11522        232 VAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDILCL--AKALGGGVMPI  309 (459)
T ss_pred             EEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCCCCCEEEe--chhhhCCCccc
Confidence            689999999999999888    9999999999999999999985 3322    11222345898755  5976642  37


Q ss_pred             eEEEEcccccccCC--CcccCCcceeecccCCCCCCCCCCCCCCCCC--CHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Q 017640          278 GFLFGKSDLLSAMP--PFLGGGEMISDVFLDHSTFADPPSRFEAGTP--AIGEAIGLGAAIDYLSTIGMQKIHAYEVKWI  353 (368)
Q Consensus       278 G~l~~~~~li~~l~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~--~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~  353 (368)
                      |.+++++++.+.+.  +...                       .+|.  |..+.++..++++.+++.   .+.+++.++.
T Consensus       310 gav~~~~~i~~~~~~~~~~~-----------------------~~T~~gnp~~~Aaala~L~~i~~~---~l~~~~~~~g  363 (459)
T PRK11522        310 GATIATEEVFSVLFDNPFLH-----------------------TTTFGGNPLACAAALATINVLLEQ---NLPAQAEQKG  363 (459)
T ss_pred             eeEEEcHHHHHHhccCCccc-----------------------CCCCCCCHHHHHHHHHHHHHHhcc---hHHHHHHHHH
Confidence            88888888766443  1111                       1233  777778888888888763   4567888888


Q ss_pred             HHHHHHHHhh
Q 017640          354 ICSIIVIQER  363 (368)
Q Consensus       354 ~~l~~~l~~~  363 (368)
                      +++.+.|+++
T Consensus       364 ~~l~~~L~~l  373 (459)
T PRK11522        364 DYLLDGFRQL  373 (459)
T ss_pred             HHHHHHHHHH
Confidence            8888877654

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.65  E-value=6.1e-14  Score=134.39  Aligned_cols=263  Identities=14%  Similarity=0.154  Sum_probs=167.6

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..+      .|+.+|.+.+++.+.+...... +...     ...+...++.+.|++.+.....+.++|+++++
T Consensus        38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~-~~~~-----~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGs  111 (421)
T PRK09792         38 EGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTHT-AYQI-----VPYESYVTLAEKINALAPVSGQAKTAFFTTGA  111 (421)
T ss_pred             CCCEEEEccCchhhhcCCCCCHHHHHHHHHHHHhccCc-ccCc-----cCCHHHHHHHHHHHHhCCCCCCceEEEeCChH
Confidence            4456777632      4678999999999998864211 1100     11233346777777776532223889999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHH-----cC-----CEEEEEeCCCC--CC---CCHHHHHHh
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK-----TG-----ANLKFLNLNDD--ES---PDLDKLKEM  204 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~-----~g-----~~v~~v~~~~~--~~---~d~~~l~~~  204 (368)
                      +|++.+++..+.  ...+.+|+....+||+.......+...     .+     ..+..+|...+  +.   -+++.+++.
T Consensus       112 eA~e~AlklAr~--~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~l~~~  189 (421)
T PRK09792        112 EAVENAVKIARA--HTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERL  189 (421)
T ss_pred             HHHHHHHHHHHH--hcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcccccccHHHHHHHHHHH
Confidence            999999987632  344567898999999865443332110     00     01233343211  11   134677777


Q ss_pred             cc-----cCceEEEEccccccccccc-C---HHHHHHHHHhcCCEEEEecCCc-CCcc--cccCC--CCCccEEEecCcC
Q 017640          205 LS-----RKTKLVVIHHISNMLASIL-P---IEEIVHWSHDVGAKVLVDACQS-VPHM--VVDVQ--GLDADFLVASSHK  270 (368)
Q Consensus       205 l~-----~~~~~v~~~~~~n~tG~~~-~---l~~i~~l~~~~g~~li~D~a~~-~~~~--~~~~~--~~~~d~~~~s~~K  270 (368)
                      +.     +++++|+++..++++|... |   +++|.++|++||+++|+||++. ++..  .+...  ...+|+  .+++|
T Consensus       190 ~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pDi--~t~gK  267 (421)
T PRK09792        190 FKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDL--MTMAK  267 (421)
T ss_pred             HHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCCCCcE--EEeeh
Confidence            75     3578999999999999876 5   8999999999999999999977 3322  11111  235775  55679


Q ss_pred             cCCC-CcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH
Q 017640          271 MCGP-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYE  349 (368)
Q Consensus       271 ~~g~-~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~  349 (368)
                      .+++ -.+|++++++++.+.+.+...+.                     ....+....++..+.++++++.   .+.+++
T Consensus       268 ~l~~G~pigav~~~~~i~~~~~~~~~~~---------------------T~~gnpl~~aaa~a~l~~l~~~---~~~~~~  323 (421)
T PRK09792        268 SLAGGMPLSGVVGNANIMDAPAPGGLGG---------------------TYAGNPLAVAAAHAVLNIIDKE---SLCERA  323 (421)
T ss_pred             hhcCCCceEEEEEcHHHHhccCCCCcCC---------------------CCCCCHHHHHHHHHHHHHHHhh---hHHHHH
Confidence            7763 22899999999887765432211                     1145666677777888888763   344555


Q ss_pred             HHHHHHHHHHHHh
Q 017640          350 VKWIICSIIVIQE  362 (368)
Q Consensus       350 ~~l~~~l~~~l~~  362 (368)
                      +++.+++.+.+.+
T Consensus       324 ~~~g~~l~~~l~~  336 (421)
T PRK09792        324 NQLGQRLKNTLID  336 (421)
T ss_pred             HHHHHHHHHHHHH
Confidence            5666666665554

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.64  E-value=7.6e-14  Score=134.64  Aligned_cols=263  Identities=12%  Similarity=0.142  Sum_probs=170.0

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++--|+|..+      .|+..+.+.+++.++++... .....     ....+...++.+.+++.+.....+.++|+++++
T Consensus        54 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~-~~~~~-----~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGs  127 (443)
T PRK06058         54 DGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVARFT-HTCFM-----VTPYEGYVAVAEQLNRLTPGDHEKRSALFNSGA  127 (443)
T ss_pred             CCCEEEEcCcchhhhccCCCCHHHHHHHHHHHHhcc-Ccccc-----ccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcH
Confidence            4556777743      56789999999999988642 11100     011244446777888877533223789999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHH-----cC-----CEEEEEeCCCCCC------C-------
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK-----TG-----ANLKFLNLNDDES------P-------  196 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~-----~g-----~~v~~v~~~~~~~------~-------  196 (368)
                      +|++.+++..+.  ...+++|+....+||+.......+...     .+     ..+..++....+.      .       
T Consensus       128 eA~e~AlklAr~--~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (443)
T PRK06058        128 EAVENAVKIARS--YTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAA  205 (443)
T ss_pred             HHHHHHHHHHHH--hhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHH
Confidence            999999986432  344578999999999876544332210     01     1122232211110      0       


Q ss_pred             -CHHHHHHhcc-cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEE
Q 017640          197 -DLDKLKEMLS-RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLV  265 (368)
Q Consensus       197 -d~~~l~~~l~-~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~  265 (368)
                       .++.+++.+. +++++|+++..+...|.+.|    +++|.++|++||+++|+||++. +|..    ..+.....+|+++
T Consensus       206 ~~~~~l~~~~~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~PDiv~  285 (443)
T PRK06058        206 RAITVIEKQVGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIVPDLIT  285 (443)
T ss_pred             HHHHHHHHhhCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCCCCCEEE
Confidence             1233444443 46789999988887787776    9999999999999999999986 4322    1122234689988


Q ss_pred             ecCcCcCCCCc--ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHH
Q 017640          266 ASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQ  343 (368)
Q Consensus       266 ~s~~K~~g~~G--~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~  343 (368)
                      .+  |.+|. |  +|++++++++.+.+.+...+.                     ....|..+.+++.++++.+.+.   
T Consensus       286 ~g--K~l~~-G~Pi~av~~~~~i~~~~~~~~~~~---------------------T~~gnpl~~aaa~a~L~~~~~~---  338 (443)
T PRK06058        286 TA--KGIAG-GLPLSAVTGRAEIMDAPHPGGLGG---------------------TYGGNPVACAAALAAIETIEED---  338 (443)
T ss_pred             Ec--ccccC-CCccEEEEEcHHHHhhccCCCCCC---------------------CCCCCHHHHHHHHHHHHHHHHc---
Confidence            85  97762 4  899999999877765432211                     1256777788888888887763   


Q ss_pred             HHHHHHHHHHHHHHHHHHhh
Q 017640          344 KIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       344 ~i~~~~~~l~~~l~~~l~~~  363 (368)
                      .+.++..++.+++.+.|+++
T Consensus       339 ~l~~~~~~~g~~l~~~L~~l  358 (443)
T PRK06058        339 DLVARARQIEALMTDRLRAL  358 (443)
T ss_pred             CHHHHHHHHHHHHHHHHHHH
Confidence            45677777777777777654

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=99.64  E-value=5.7e-15  Score=127.93  Aligned_cols=215  Identities=13%  Similarity=0.166  Sum_probs=141.2

Q ss_pred             CCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchh----hHHHHHHHHHHHHHHHHHcCCC-CCCcEEEeCCHHH
Q 017640           66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFL----SAKATDEYELARKKVAAFINAS-DSGEIVFTKNATE  140 (368)
Q Consensus        66 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~r~~la~~~~~~-~~~~v~~t~g~t~  140 (368)
                      ++.+.|+.+.+.. -|++.+.+++...+.-..........    ..+...+++.+...+.+-+|.. .+++|.+|+|+..
T Consensus        30 ~g~imLggGNPa~-iPem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~ygwnit~~NIalTnGSQs  108 (417)
T COG3977          30 PGAIMLGGGNPAR-IPEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNITAQNIALTNGSQS  108 (417)
T ss_pred             CCceeeCCCCccc-ChhHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhCCCCccceeeecCCccc
Confidence            5677887766554 44566666655554332211111111    1223455666666666666665 3459999999999


Q ss_pred             HHHHHHHHccCCCCCCCC--EEEEc-CCCCcccHHHHHHHHHHcCCE-EEEEeCCC------C----CCCCHHHHHHhcc
Q 017640          141 AINLVAYSWGLSNLKSGD--EVILT-VAEHHSAIVPWQLVAQKTGAN-LKFLNLND------D----ESPDLDKLKEMLS  206 (368)
Q Consensus       141 a~~~~~~~~~~~~~~~gd--~vl~~-~~~~~s~~~~~~~~~~~~g~~-v~~v~~~~------~----~~~d~~~l~~~l~  206 (368)
                      +...+...|+-. ...|+  .|+++ .|+|-+.-+    +    |.+ -.+|...+      .    +.+|.+.|.  +.
T Consensus       109 ~fFYlfNlF~G~-~sdG~~k~illPLaPeYiGY~d----~----~l~~d~fVs~kP~iel~~~g~FKY~vDF~~l~--i~  177 (417)
T COG3977         109 AFFYLFNLFAGR-RSDGTEKKILLPLAPEYIGYAD----A----GLEEDLFVSAKPNIELLPAGQFKYHVDFEHLH--IG  177 (417)
T ss_pred             hHHHHHHHhcCc-cCCCcceeEeeccChhhccccc----c----ccCccceeeccCCcccccccceeeccCHHHcc--cc
Confidence            999999887421 22333  45544 887777422    2    221 12222222      1    456777765  55


Q ss_pred             cCceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcccccCCC----C-CccEEEecCcCcCCCCc--
Q 017640          207 RKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMVVDVQG----L-DADFLVASSHKMCGPTG--  276 (368)
Q Consensus       207 ~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~----~-~~d~~~~s~~K~~g~~G--  276 (368)
                      +.+.+||++.|+||||.++.   +.+|.+++++||+.+++|.+|+.+...+.+.+    + ...+.|.|+||. |.+|  
T Consensus       178 e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~iifsd~~~~w~~NiilC~SLSK~-GLPG~R  256 (417)
T COG3977         178 ESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIFSDATPLWNENIILCMSLSKL-GLPGSR  256 (417)
T ss_pred             cccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCceecccccccCCCCEEEEeehhhc-CCCCcc
Confidence            78899999999999999998   66778889999999999999997665443332    2 466888999996 4455  


Q ss_pred             ceEEEEcccccccCCCc
Q 017640          277 IGFLFGKSDLLSAMPPF  293 (368)
Q Consensus       277 ~G~l~~~~~li~~l~~~  293 (368)
                      +|+++.+++++..+...
T Consensus       257 ~GIiIane~viqaitnm  273 (417)
T COG3977         257 CGIIIANEKVIQAITNM  273 (417)
T ss_pred             eeEEEccHHHHHHHHhc
Confidence            99999999998776644

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=99.64  E-value=3.9e-14  Score=128.80  Aligned_cols=244  Identities=15%  Similarity=0.131  Sum_probs=167.0

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCcEEEeC-CHHHHH---HHHHHHccCCC-CCCCCEEEEcCCCCcccHHHHHHHHHHc
Q 017640          107 AKATDEYELARKKVAAFINASDSGEIVFTK-NATEAI---NLVAYSWGLSN-LKSGDEVILTVAEHHSAIVPWQLVAQKT  181 (368)
Q Consensus       107 ~~~~~~~~~~r~~la~~~~~~~~~~v~~t~-g~t~a~---~~~~~~~~~~~-~~~gd~vl~~~~~~~s~~~~~~~~~~~~  181 (368)
                      .+..+++.+++++|.+..|.+   .|.+++ .+.++=   .++++.+.... -..++++++++..|..+...    +...
T Consensus       105 qG~l~li~~Lq~~L~~ITG~D---avsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPAS----Aam~  177 (496)
T COG1003         105 QGYLELIYELQEWLKEITGMD---AVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPAS----AAMA  177 (496)
T ss_pred             HHHHHHHHHHHHHHHHhcCCc---eeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhh----Hhhc
Confidence            456889999999999999997   566653 223333   33444442111 11346899999999987643    3456


Q ss_pred             CCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEccccccccccc-CHHHHHHHHHhcCCEEEEecCCcCCcccc-cCCCC
Q 017640          182 GANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASIL-PIEEIVHWSHDVGAKVLVDACQSVPHMVV-DVQGL  259 (368)
Q Consensus       182 g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~-~l~~i~~l~~~~g~~li~D~a~~~~~~~~-~~~~~  259 (368)
                      |.+|+.|+.+++|.+|+++|++++.+++.++++++|++. |..- .+.+|+++.|++|..|..|++..-..+-+ ...++
T Consensus       178 G~~VV~V~~~~~G~VDlddLk~k~~~~~AalMiTnPsT~-GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~rPGd~  256 (496)
T COG1003         178 GFKVVVVKCDENGNVDLDDLRAKAEDNLAALMITNPSTL-GVFEEDIREICEIVHEAGGQVYYDGANLNAIVGLARPGDM  256 (496)
T ss_pred             CceEEEEecCCCCCccHHHHHHHhccceeEEEeccCccc-ccchhhHHHHHHHHHHcCCEEEecCcchhhhhcccccccc
Confidence            999999999999999999999999999999999999775 5443 49999999999999999999977554433 34567


Q ss_pred             CccEEEecCcCcC------CCCcceEEEEcccccccCC-CcccCCcceeecccCCCCCCCCCCCCC--CCCCCHHHHHHH
Q 017640          260 DADFLVASSHKMC------GPTGIGFLFGKSDLLSAMP-PFLGGGEMISDVFLDHSTFADPPSRFE--AGTPAIGEAIGL  330 (368)
Q Consensus       260 ~~d~~~~s~~K~~------g~~G~G~l~~~~~li~~l~-~~~~g~~~~~~~~~~~~~~~~~~~~~~--~gt~~~~~~~a~  330 (368)
                      +.|++-.++||.|      |++|.|=+.++..+...+. |...  ........++. ....-.+..  .|+.++  +.-.
T Consensus       257 G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~--~~~~~y~~~~~-~~~s~g~~~a~~Gs~~i--l~~a  331 (496)
T COG1003         257 GFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVY--HDVGEYRLDYD-GKKSIGVSAAPYGSASI--LPIA  331 (496)
T ss_pred             ccceEEeecccccccCCCCCCCCCCceehHhhccccCCCCccc--CCCccccccCC-CCccceeeccccCcchH--HHHH
Confidence            8999999999965      2445888889988877665 2211  00000000100 001111111  222222  2233


Q ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          331 GAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       331 ~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      ...+..+-..|++...+...-.++|+..+|+..
T Consensus       332 ~~YI~~mG~~GL~~ase~AvLNANYia~rL~~~  364 (496)
T COG1003         332 WAYIRMMGADGLKQASEVAVLNANYIARRLKGY  364 (496)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhhc
Confidence            444555555688899999999999999999853

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.64  E-value=8.3e-14  Score=133.70  Aligned_cols=262  Identities=13%  Similarity=0.105  Sum_probs=163.0

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC--CCCcEEE-eC
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS--DSGEIVF-TK  136 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~--~~~~v~~-t~  136 (368)
                      ++.-|+|..      ..|+.+|.+.+++++++..... .+. ...    ..+...++.+.+++.+..+  .++.++| ++
T Consensus        37 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~-~~~-~~~----~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~  110 (425)
T PRK09264         37 DGKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRDGI-THG-LDM----HTTAKREFLETFEETILKPRGLDYKVQFTGP  110 (425)
T ss_pred             CCCEeeecccchhhccCCCCCHHHHHHHHHHHHhccc-ccc-ccc----CcHHHHHHHHHHHHhhcCCcCCCceEEEeCC
Confidence            344577763      3567899999999998875311 111 001    1233445677777765322  1125666 48


Q ss_pred             CHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHH------cC---CEEEEEeCCCCC---CCCHHHHHHh
Q 017640          137 NATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK------TG---ANLKFLNLNDDE---SPDLDKLKEM  204 (368)
Q Consensus       137 g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~------~g---~~v~~v~~~~~~---~~d~~~l~~~  204 (368)
                      |+++|++.+++..+.  ...+.+|+....+||+...........      .+   ..+..+|.....   .-|++.+++.
T Consensus       111 sGseA~e~AlklAr~--~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~  188 (425)
T PRK09264        111 TGTNAVEAALKLARK--VTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKL  188 (425)
T ss_pred             CHHHHHHHHHHHHHH--hcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHH
Confidence            999999999997642  344567888899999865433332110      01   123444443110   1267788888


Q ss_pred             ccc------CceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCc---c-cccCCCCCccEEEecCc
Q 017640          205 LSR------KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPH---M-VVDVQGLDADFLVASSH  269 (368)
Q Consensus       205 l~~------~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~---~-~~~~~~~~~d~~~~s~~  269 (368)
                      +..      ++.+|+++.+....|.+.+    +++|.++|++||+++|+||+|+ +|.   . ..+.....+|+++.  +
T Consensus       189 l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~PDi~t~--~  266 (425)
T PRK09264        189 LEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITPDIVTL--S  266 (425)
T ss_pred             HHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCCCCEEEe--c
Confidence            742      4689999999998887654    8999999999999999999986 321   1 22223346887765  5


Q ss_pred             CcCCCCc--ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHHHHhCHHHHH
Q 017640          270 KMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAI-DYLSTIGMQKIH  346 (368)
Q Consensus       270 K~~g~~G--~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al-~~~~~~g~~~i~  346 (368)
                      |.+|+.|  +|++++++++ ..+.+...+                  ..   .+.+..+.++..+++ +++.+   ..+.
T Consensus       267 K~l~~~G~pigav~~~~~i-~~~~~~~~~------------------~T---~~gnp~~~aaa~a~l~~~~~~---~~l~  321 (425)
T PRK09264        267 KSISGYGLPMALVLIKPEL-DVWKPGEHN------------------GT---FRGNNLAFVTATAALEEYWSD---DAFE  321 (425)
T ss_pred             cccCCCccceEEEEEchhh-hccCCCccC------------------CC---CCCCHHHHHHHHHHHHHHHhh---hHHH
Confidence            9888766  7999999886 333221111                  11   134455556666666 44333   4566


Q ss_pred             HHHHHHHHHHHHHHHh
Q 017640          347 AYEVKWIICSIIVIQE  362 (368)
Q Consensus       347 ~~~~~l~~~l~~~l~~  362 (368)
                      ++++++.+++.+.+++
T Consensus       322 ~~~~~~g~~l~~~l~~  337 (425)
T PRK09264        322 KEVKAKGELVRERLEE  337 (425)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7777777777776654

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.63  E-value=6.1e-14  Score=133.62  Aligned_cols=260  Identities=12%  Similarity=0.072  Sum_probs=160.8

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..      ..|+.+|.+.+++.+.+......   +...    ..+...++.+.|.+..+..  +.+.|++|++
T Consensus        38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~---~~~~----~~~~~~~la~~L~~~~~~~--~~v~f~~sGs  108 (408)
T PRK04612         38 QGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLWHT---SNVF----YSAPPLKLAEELVTASRFA--EKVFLCNSGT  108 (408)
T ss_pred             CCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccc---cccc----CCHHHHHHHHHHHhhCCCC--CEEEEcCchH
Confidence            455677763      35678999999999988764211   1111    1223346777777765432  4899999999


Q ss_pred             HHHHHHHHHccCCC--CC---CCCEEEEcCCCCcccHHHHHHHHHHc----CC-----EEEEEeCCCCCCCCHHHHHHhc
Q 017640          140 EAINLVAYSWGLSN--LK---SGDEVILTVAEHHSAIVPWQLVAQKT----GA-----NLKFLNLNDDESPDLDKLKEML  205 (368)
Q Consensus       140 ~a~~~~~~~~~~~~--~~---~gd~vl~~~~~~~s~~~~~~~~~~~~----g~-----~v~~v~~~~~~~~d~~~l~~~l  205 (368)
                      +|++.+++..+...  ..   .+.+|+....+||+............    +.     .+..++.     .|++.+++.+
T Consensus       109 eA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~  183 (408)
T PRK04612        109 EANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDF-----NDVEALEAAM  183 (408)
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCC-----CCHHHHHHhh
Confidence            99999998753210  01   13468999999998754433221100    00     1112222     2788999888


Q ss_pred             cc-CceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCccc--ccCCCCCccEEEecCcCcCCCC-c
Q 017640          206 SR-KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV--VDVQGLDADFLVASSHKMCGPT-G  276 (368)
Q Consensus       206 ~~-~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~~--~~~~~~~~d~~~~s~~K~~g~~-G  276 (368)
                      .+ ++.+|+++..+...|.+.+    +++|.++|++||+++|+||+|. +|...  +.....+....+.+++|.+|+. .
T Consensus       184 ~~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pdi~t~~K~l~~G~p  263 (408)
T PRK04612        184 AGGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIVTLAKALGGGFP  263 (408)
T ss_pred             CCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchhhhhhcCCCCCEEEEcchhcCCCc
Confidence            64 4456666655444444443    8899999999999999999987 33221  1111223344455667977631 2


Q ss_pred             ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 017640          277 IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICS  356 (368)
Q Consensus       277 ~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l  356 (368)
                      +|++++++++.+.+.....+                  ..|   +.+.....++.++++.+++   +.+.+++.++.+++
T Consensus       264 iga~~~~~~~~~~~~~~~~~------------------~t~---~~~p~~~aaa~a~L~~~~~---~~l~~~~~~~g~~l  319 (408)
T PRK04612        264 IGAMLAGPKVAETMQFGAHG------------------TTF---GGNPLAAAVARVALRKLAS---PQIAANVARQSAAL  319 (408)
T ss_pred             eEEEEECHHHHhhhcCCCcC------------------CCC---CCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHH
Confidence            89999888877666532211                  111   4567777778888888876   34567777777777


Q ss_pred             HHHHHhh
Q 017640          357 IIVIQER  363 (368)
Q Consensus       357 ~~~l~~~  363 (368)
                      .+.|++.
T Consensus       320 ~~~l~~l  326 (408)
T PRK04612        320 RAGLEAL  326 (408)
T ss_pred             HHHHHHH
Confidence            7776653

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.63  E-value=1.5e-13  Score=131.63  Aligned_cols=264  Identities=13%  Similarity=0.131  Sum_probs=167.0

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..+      .|+.+|.+.+++.+.+..+......      ....+...++.+.+++.+.....+.++|+++++
T Consensus        38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~------~~~~~~~~~la~~l~~~~p~~~~~~v~f~~SGs  111 (425)
T PRK07495         38 EGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTHTCHQ------VVPYENYVRLAERLNALVPGDFAKKTIFVTTGA  111 (425)
T ss_pred             CCCEEEEccccHHhhccCCCCHHHHHHHHHHHhhccCcccC------ccCCHHHHHHHHHHHHhCCCCCCCEEEECCchH
Confidence            4456787633      4688999999999998864211110      011234446777788877533223899999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHH---c--C-----CEEEEEeCCCC--CC---CCHHHHHHh
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK---T--G-----ANLKFLNLNDD--ES---PDLDKLKEM  204 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~---~--g-----~~v~~v~~~~~--~~---~d~~~l~~~  204 (368)
                      +|++.+++..+.  ...+.+|+.....||+.......+...   .  +     ..+..+|.+.+  +.   -+++.+++.
T Consensus       112 eA~e~AlklAr~--~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~  189 (425)
T PRK07495        112 EAVENAVKIARA--ATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVELHGVSVEQSLAALDKL  189 (425)
T ss_pred             HHHHHHHHHHHH--hhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCcccccccHHHHHHHHHHH
Confidence            999999987532  344567888898898865332222100   0  0     12344444321  11   124455666


Q ss_pred             cc-----cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCccc--ccCC--CCCccEEEecCcC
Q 017640          205 LS-----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV--VDVQ--GLDADFLVASSHK  270 (368)
Q Consensus       205 l~-----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~~--~~~~--~~~~d~~~~s~~K  270 (368)
                      +.     .++++|+++.....+|.+.+    +++|.++|++||+++|+|++|. +|...  +..+  ...+|+  .+++|
T Consensus       190 ~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~gv~pDi--~tlsK  267 (425)
T PRK07495        190 FKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEVAADL--TTMAK  267 (425)
T ss_pred             HHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeecccCCCCCE--Eeehh
Confidence            53     35788999988877886544    8999999999999999999987 32221  1122  234565  55569


Q ss_pred             cCCCC-cceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH
Q 017640          271 MCGPT-GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYE  349 (368)
Q Consensus       271 ~~g~~-G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~  349 (368)
                      .+++. .+|++++++++.+.+.+...+                     .....+....++..++++++++.   .+.++.
T Consensus       268 ~l~~G~pigav~~~~~i~~~~~~~~~~---------------------~T~~~~pl~~aaa~a~l~~l~~~---~l~~~~  323 (425)
T PRK07495        268 GLAGGFPLAAVTGRAEIMDAPGPGGLG---------------------GTYGGNPLGIAAAHAVLDVIEEE---DLCERA  323 (425)
T ss_pred             hhcCCccceEEEEcHHHHhccCCCCcC---------------------CCCCCCHHHHHHHHHHHHHHHhc---hHHHHH
Confidence            66532 289999999988776543211                     11245666777777888888763   455666


Q ss_pred             HHHHHHHHHHHHhh
Q 017640          350 VKWIICSIIVIQER  363 (368)
Q Consensus       350 ~~l~~~l~~~l~~~  363 (368)
                      +++.+++.+.+++.
T Consensus       324 ~~~g~~l~~~L~~l  337 (425)
T PRK07495        324 NQLGNRLKQRLASL  337 (425)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66767766666543

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=99.62  E-value=3.7e-14  Score=130.02  Aligned_cols=241  Identities=16%  Similarity=0.075  Sum_probs=184.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCC-CC---CEEEEcCCCCcccHHHHHHHHHHcCC
Q 017640          108 KATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLK-SG---DEVILTVAEHHSAIVPWQLVAQKTGA  183 (368)
Q Consensus       108 ~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~-~g---d~vl~~~~~~~s~~~~~~~~~~~~g~  183 (368)
                      ...++..++-+.++.+|+.+++..-.-|.|+|+++.++-..+.....+ .|   -.++.+..    +..+|.++++..+.
T Consensus       117 ~~~~~e~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~----v~~a~eK~a~yf~v  192 (491)
T KOG1383|consen  117 VVRKLEAECVNMIANLFNAPSDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQN----VHAAFEKAARYFEV  192 (491)
T ss_pred             hhHHHHHHHHHHHHHHhcCCccccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHH----HHHHHHHHHhhEEE
Confidence            346777889999999999996544477889999966666554211112 11   24555555    56679999999999


Q ss_pred             EEEEEeCC-CCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHh-cCCEEEEecCCcCCcc--------c
Q 017640          184 NLKFLNLN-DDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHD-VGAKVLVDACQSVPHM--------V  253 (368)
Q Consensus       184 ~v~~v~~~-~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~-~g~~li~D~a~~~~~~--------~  253 (368)
                      +++.||++ .++.+|+..+.+.++++|.+++.+.++.|+|.+.|+++|.++..+ +++.+++|++.+-...        +
T Consensus       193 ~l~~V~~~~~~~~~D~~k~~~~i~eNti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~  272 (491)
T KOG1383|consen  193 ELREVPLDEGDYRVDPGKVVRMIDENTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEE  272 (491)
T ss_pred             EEEeeeccccceEecHHHHHHHhccceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccccccccCccc
Confidence            99999999 568999999999999999999999999999999999999999998 9999999999873332        4


Q ss_pred             ccCCCCCccEEEecCcC-cCCCCcceEEEEcccccccCC----CcccCCcceeecccCCCCCCCCCCCCC-CCCCCHHHH
Q 017640          254 VDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMP----PFLGGGEMISDVFLDHSTFADPPSRFE-AGTPAIGEA  327 (368)
Q Consensus       254 ~~~~~~~~d~~~~s~~K-~~g~~G~G~l~~~~~li~~l~----~~~~g~~~~~~~~~~~~~~~~~~~~~~-~gt~~~~~~  327 (368)
                      +|+...+...+..+.|| .|.|.|.++++.+.+-+..-+    .-..||-.               ..+. .|+.+-..+
T Consensus       273 fdFr~p~V~Sisa~~HKYGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg~y---------------~s~TlngSR~g~~v  337 (491)
T KOG1383|consen  273 FDFRVPGVTSISADGHKYGLAPAGSSWVLYRNKELLPHQLFFHTDWLGGIY---------------ASPTLNGSRPGSQV  337 (491)
T ss_pred             cccCCCCceeEeeccceeeeeecCcEEEEEcccccccceEEEeccccCccc---------------cCcccccCCcccHH
Confidence            55666678889999999 789999998887765321111    11112111               1222 456666677


Q ss_pred             HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          328 IGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       328 ~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      ++..+++-.+...|.....+.+.+.+..+++.|+++.+++
T Consensus       338 a~~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~~i~  377 (491)
T KOG1383|consen  338 AAQWAALMSLGEEGYRENTQNIVETARKLREGIENIKGIK  377 (491)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhccccce
Confidence            7777777777888999999999999999999999988765

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=99.62  E-value=4.8e-14  Score=128.26  Aligned_cols=284  Identities=15%  Similarity=0.140  Sum_probs=201.5

Q ss_pred             EEeccCCCCCCcHHHHH-HHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHH
Q 017640           69 VYLDNAATSQKPIAVLK-ALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAY  147 (368)
Q Consensus        69 i~l~~~~~~~~~~~v~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~  147 (368)
                      -|++.+.++..-|.++. .+.+.-..+..+... +..-+++..+.+-+.+..++++.|.+-. +--+-.++|.+-+.++.
T Consensus        78 sfiG~GyY~~~~P~vI~rnile~pewyTaYTPY-QpEISQGrLqaLfefQtlv~dLTGm~VA-NASm~DeaTAaAEAm~m  155 (450)
T COG0403          78 SFIGAGYYDTYTPPVILRNILENPEWYTAYTPY-QPEISQGRLEALFEFQTLVADLTGLDVA-NASMLDEATAAAEAMLM  155 (450)
T ss_pred             hhccCcccCCcCcHHHHHHhhcCccccccCCCC-chhhhhHHHHHHHHHHHHHHHHhCCCcc-cchhhhhHHHHHHHHHH
Confidence            37888888854444444 555433333233221 3345667788888999999999999854 55666788888888887


Q ss_pred             HccCCCCCC--CCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccc-cc
Q 017640          148 SWGLSNLKS--GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLA-SI  224 (368)
Q Consensus       148 ~~~~~~~~~--gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG-~~  224 (368)
                      +.+   ..+  .++++++...|+....-++..++..|.+++.++.+     |+++|+++...++..+++..|+ ..| ..
T Consensus       156 a~r---~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~-----d~~~l~~~~~~~~~gv~vQyP~-~~G~~~  226 (450)
T COG0403         156 AKR---VTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD-----DLDDLESADDGDVFGVLVQYPN-TFGIVE  226 (450)
T ss_pred             HHH---hhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccc-----hhhhhhhccccCeEEEEEecCC-CCCccc
Confidence            773   333  67999999999999999999988889999988877     8889998833478999999996 466 66


Q ss_pred             cCHHHHHHHHHhcCCEEEEecC-CcCCcccccCCCCCccEEEecCcCc-----CCCCcceEEEEcccccccCCCcccCCc
Q 017640          225 LPIEEIVHWSHDVGAKVLVDAC-QSVPHMVVDVQGLDADFLVASSHKM-----CGPTGIGFLFGKSDLLSAMPPFLGGGE  298 (368)
Q Consensus       225 ~~l~~i~~l~~~~g~~li~D~a-~~~~~~~~~~~~~~~d~~~~s~~K~-----~g~~G~G~l~~~~~li~~l~~~~~g~~  298 (368)
                      .++++|.+.+|++|.++++=.- -+++.+ -....++.|+++++.+.+     ||+|-+|++.+++++.+++...+.|-+
T Consensus       227 ~d~~~l~~~~h~~~al~~v~aDplaL~LL-~pPGe~GADIvvG~~QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S  305 (450)
T COG0403         227 EDLRALIEAAHSAGALVIVAADPLALGLL-KPPGEFGADIVVGSAQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVS  305 (450)
T ss_pred             hhHHHHHHHHhhcCCEEEEEechhHhhcc-CCccccCCceEEecCcccCCCcCCCCcceeeeeEhHhHhhcCCCceeeee
Confidence            6699999999999987765322 222222 134567999999999984     555559999999999988887777644


Q ss_pred             ceeecccCC-CCC--CCCCCCCCCCCCCHHHHH---HHHH--HHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhc
Q 017640          299 MISDVFLDH-STF--ADPPSRFEAGTPAIGEAI---GLGA--AIDYLSTIGMQKIHAYEVKWIICSIIVIQERH  364 (368)
Q Consensus       299 ~~~~~~~~~-~~~--~~~~~~~~~gt~~~~~~~---a~~~--al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~  364 (368)
                      .-..-...+ ..+  .+.+-|.+-.|.|+..--   |+.+  ...++-..|+++|.+++.+++.++.++|+++.
T Consensus       306 ~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~  379 (450)
T COG0403         306 VDAAGKRAFRLALQTREQHIRREKATSNICTNQALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIG  379 (450)
T ss_pred             ecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            321111100 011  234457777788886433   2222  23355566899999999999999999999764

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=99.62  E-value=1.1e-14  Score=144.14  Aligned_cols=222  Identities=12%  Similarity=0.075  Sum_probs=163.8

Q ss_pred             HHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC
Q 017640          112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN  191 (368)
Q Consensus       112 ~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~  191 (368)
                      .+.+.++..|+.||++.  ..++++|+|.++..++.+.    +++||.|++...+|.|++.++    ...|+++++++..
T Consensus       196 ~i~eAe~~AA~~fgAd~--tyfvvNGTS~~n~av~~a~----~~~Gd~VLvdRN~HKSv~haL----ilsga~PVYl~P~  265 (714)
T PRK15400        196 PHKEAEEYIARVFNADR--SYMVTNGTSTANKIVGMYS----APAGSTVLIDRNCHKSLTHLM----MMSDVTPIYFRPT  265 (714)
T ss_pred             HHHHHHHHHHHHhCCCc--EEEEeCchHHHHHHHHHHh----cCCCCEEEeecccHHHHHHHH----HHcCCeEEEeccc
Confidence            56789999999999983  6788899999999999988    899999999999999987643    4559999999876


Q ss_pred             CC-----CCCC-----HHHHHHhcccCc--e---EEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCc--ccc
Q 017640          192 DD-----ESPD-----LDKLKEMLSRKT--K---LVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPH--MVV  254 (368)
Q Consensus       192 ~~-----~~~d-----~~~l~~~l~~~~--~---~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~--~~~  254 (368)
                      .+     +.++     .+.+++++...+  +   .++++++ +..|.++++++|+++|+.++  +++|+||+.-.  .+.
T Consensus       266 rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~p-TYdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~  342 (714)
T PRK15400        266 RNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPI  342 (714)
T ss_pred             ccccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECC-CCccEecCHHHHHHHhCCCC--EEEEccchhhhccCcc
Confidence            43     3445     789999986532  3   6888888 66899999999999999887  79999988321  111


Q ss_pred             --cCCC--CCc---c--EEEecCcCcCC-CCcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCH
Q 017640          255 --DVQG--LDA---D--FLVASSHKMCG-PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAI  324 (368)
Q Consensus       255 --~~~~--~~~---d--~~~~s~~K~~g-~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~  324 (368)
                        +...  .+.   |  +++-|.||.++ ....++|.++.. ++.  ..+                ...-.-+.+.+|++
T Consensus       343 ~~~~sam~~ga~~~~~i~vtQStHKtL~alTQaS~LHvkg~-vd~--~~~----------------n~a~~m~~STSPsY  403 (714)
T PRK15400        343 YEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD-VNE--ETF----------------NEAYMMHTTTSPHY  403 (714)
T ss_pred             cCCcChhhcCCCCCCceEEEEchhhcccchhHHhHHHHcCC-CCH--HHH----------------HHHHHHHcCCCcHH
Confidence              0111  122   4  88899999665 555677765443 110  000                00002345668999


Q ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcC
Q 017640          325 GEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHN  365 (368)
Q Consensus       325 ~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g  365 (368)
                      +.++++..+..++.....+.+.+...+++..+++.|.++.+
T Consensus       404 ~l~ASLD~a~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~  444 (714)
T PRK15400        404 GIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRT  444 (714)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999998644466778888888888888877654

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.61  E-value=4.1e-13  Score=129.36  Aligned_cols=264  Identities=14%  Similarity=0.133  Sum_probs=168.6

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..      ..|+.+|.+.+++.++++........  .    ...+...++.+.|++.+.....+.|.|+++++
T Consensus        40 dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~~~~~~~~--~----~~~~~~~~lae~L~~~~p~~~~~~v~f~~SGs  113 (445)
T PRK08593         40 DGKTYIDLLASASSQNVGHAPPRVVEAIKAQADKFIHYTPA--Y----MYHEPLVRLAKKLCELAPGDFEKRVTFGLSGS  113 (445)
T ss_pred             CCCEEEECCccHHhhcCCCCCHHHHHHHHHHHHhccCcccc--c----cCCHHHHHHHHHHHHhCCCCCCCEEEECCchH
Confidence            344577763      35678999999999998764221110  0    11244457888888887543223899999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHH-------cC---CEEEEEeCCCCC-----CCC-------
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK-------TG---ANLKFLNLNDDE-----SPD-------  197 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~-------~g---~~v~~v~~~~~~-----~~d-------  197 (368)
                      +|++.+++..+.  ...+..|+..+..||+.......+...       .+   ..+..+|.....     ..+       
T Consensus       114 eA~e~AiklAr~--~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  191 (445)
T PRK08593        114 DANDGIIKFARA--YTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEY  191 (445)
T ss_pred             HHHHHHHHHHHH--hhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHH
Confidence            999999986532  334557888888888865433322210       00   113334432111     011       


Q ss_pred             HHHHHHhcc-----cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCccc----ccCCCCCccE
Q 017640          198 LDKLKEMLS-----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLDADF  263 (368)
Q Consensus       198 ~~~l~~~l~-----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~~----~~~~~~~~d~  263 (368)
                      ++.+++.+.     +++.+|+++.+.+..|.+.|    +++|.++|++||+++|+||++. +|..-    .+.....+|+
T Consensus       192 ~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~pDi  271 (445)
T PRK08593        192 LAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDL  271 (445)
T ss_pred             HHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCCCCCE
Confidence            234444442     46799999999999998877    9999999999999999999984 54321    1222335787


Q ss_pred             EEecCcCcCCC-CcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCH
Q 017640          264 LVASSHKMCGP-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGM  342 (368)
Q Consensus       264 ~~~s~~K~~g~-~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~  342 (368)
                      ++  ++|.+|. ..+|++++++++++.+.+...                    .+ ....+..+.++..++++.+++.  
T Consensus       272 ~t--~gK~l~~G~p~gav~~~~~i~~~~~~~~~--------------------~~-T~~~~pl~~aaa~a~l~~l~~~--  326 (445)
T PRK08593        272 MS--FGKSLAGGMPMSAIVGRKEIMESLEAPAH--------------------LF-TTGANPVSCAAALATIDMIEDE--  326 (445)
T ss_pred             ee--ecccccCCcccEEEEEcHHHHhhhccCCC--------------------CC-CCCCCHHHHHHHHHHHHHHHhc--
Confidence            75  5696652 228999999998876642211                    11 1245566777788888888763  


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh
Q 017640          343 QKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       343 ~~i~~~~~~l~~~l~~~l~~~  363 (368)
                       .+.++.+++.+++.+.|+++
T Consensus       327 -~l~~~~~~~g~~l~~~L~~l  346 (445)
T PRK08593        327 -SLLQRSAEKGEYARKRFDQW  346 (445)
T ss_pred             -cHHHHHHHHHHHHHHHHHHH
Confidence             45667777777777777653

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.61  E-value=1.5e-13  Score=129.49  Aligned_cols=218  Identities=17%  Similarity=0.143  Sum_probs=140.6

Q ss_pred             HHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeC--
Q 017640          113 YELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL--  190 (368)
Q Consensus       113 ~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~--  190 (368)
                      ..++++.+++++|.+   .+++++++|.|++++.. +   .+++||+|  +...|....   .......|+..+-+..  
T Consensus        80 ~~~LE~~vAe~lG~e---~aV~v~sGTaAl~ll~~-l---~v~pGd~V--p~n~~f~Tt---~ahI~~~Ga~fvDi~~d~  147 (460)
T PRK13237         80 FYHLEETVQEYYGFK---HVVPTHQGRGAENLLSR-I---AIKPGQYV--PGNMYFTTT---RYHQELNGGIFVDIIIDE  147 (460)
T ss_pred             HHHHHHHHHHHHCCC---eEEEeCCHHHHHHHHHH-h---CCCCcCEE--CCccchHhh---HHHHHhCCcEEEeeeccc
Confidence            448999999999997   68999999999998644 4   38999975  444444433   3323555775444421  


Q ss_pred             --------CCCCCCCHHHHHHhcccC----ceEEEEccccccc-ccccC---HHHHHHHHHhcCCEEEEecCCcCCcc--
Q 017640          191 --------NDDESPDLDKLKEMLSRK----TKLVVIHHISNML-ASILP---IEEIVHWSHDVGAKVLVDACQSVPHM--  252 (368)
Q Consensus       191 --------~~~~~~d~~~l~~~l~~~----~~~v~~~~~~n~t-G~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~--  252 (368)
                              ..+|.+|++.|+++|+++    +++|++..++|.. |...|   +++|.++|++||+.||.|+++.++..  
T Consensus       148 a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~f  227 (460)
T PRK13237        148 AHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYF  227 (460)
T ss_pred             ccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhh
Confidence                    235889999999999753    3567777777877 67764   79999999999999999999998732  


Q ss_pred             ---------cccCC------CCCccEEEecCcCcCC-CCcceEEEEcc-cccccCCCcccCCcceeecccCCCCCCCCCC
Q 017640          253 ---------VVDVQ------GLDADFLVASSHKMCG-PTGIGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPS  315 (368)
Q Consensus       253 ---------~~~~~------~~~~d~~~~s~~K~~g-~~G~G~l~~~~-~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~  315 (368)
                               ..++.      ....|.+++|++|.++ +.| |+++.++ ++.++++....-.                 .
T Consensus       228 I~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~G-G~i~t~D~eL~~~~r~~~~~~-----------------e  289 (460)
T PRK13237        228 IKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNIG-GFLAMNDEELFDEAKELVVVY-----------------E  289 (460)
T ss_pred             hcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCCc-eEEEECCHHHHHHHHHhcccc-----------------C
Confidence                     11110      1147999999999655 444 7776655 5666665442100                 0


Q ss_pred             CCC-CCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          316 RFE-AGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       316 ~~~-~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      .|. .|....--+.+++.++....+  . ....+.-+..+++.+.|.+.
T Consensus       290 G~~tygg~~grd~~alAvgl~E~~~--~-~y~~~ri~~~~~l~~~L~~~  335 (460)
T PRK13237        290 GMPSYGGMAGRDMEAMAIGIEESVQ--Y-EYIEHRVGQVRYLGEKLLAA  335 (460)
T ss_pred             CCcCCCChhhhHHHHHHhHHHhhch--H-HHHHHHHHHHHHHHHHHHHC
Confidence            110 112222234455555554333  2 33344445677888887654

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.61  E-value=8.8e-14  Score=135.42  Aligned_cols=271  Identities=12%  Similarity=0.033  Sum_probs=168.6

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..      ..|..+|.+.+++.+++..+.....  . .  ....+...++.+.|.+.+....-+.+.|+++++
T Consensus        87 dG~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~~~~~~~--~-~--~~~~~~~~~lae~L~~~~~~~~~~~v~f~~SGs  161 (504)
T PLN02760         87 NGKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPFYHS--F-W--NRTTKPSLDLAKELLEMFTARKMGKVFFTNSGS  161 (504)
T ss_pred             CCCEEEEcCcCHHhcccCCCCHHHHHHHHHHHhhccceec--c-c--ccCcHHHHHHHHHHHhhcCCCCCCEEEEeCChH
Confidence            344677743      3567899999999999886421110  0 0  011344456778877775422223789999999


Q ss_pred             HHHHHHHHHccCCC---C-CCCCEEEEcCCCCcccHHHHHHHHHHcCCE------------EEEEeCCCCCC--------
Q 017640          140 EAINLVAYSWGLSN---L-KSGDEVILTVAEHHSAIVPWQLVAQKTGAN------------LKFLNLNDDES--------  195 (368)
Q Consensus       140 ~a~~~~~~~~~~~~---~-~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~------------v~~v~~~~~~~--------  195 (368)
                      +|+..+++......   - ..+..|+..+..||+.......+   .|..            +..++.+..+.        
T Consensus       162 EA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~sl---sg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  238 (504)
T PLN02760        162 EANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASL---SGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETE  238 (504)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhc---cCChhhccCCCCCCCCcEEeCCCcccccCCCCCcH
Confidence            99999998762110   1 12357888888888764322211   1211            11222110000        


Q ss_pred             -----CCHHHHHHhcc----cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCC-cCCccc----ccCC
Q 017640          196 -----PDLDKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQ-SVPHMV----VDVQ  257 (368)
Q Consensus       196 -----~d~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~-~~~~~~----~~~~  257 (368)
                           ...++|++.+.    +++.+|+++.+....|.+.|    +++|.++|++||+++|+||++ ++|..-    .+..
T Consensus       239 ~~~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~  318 (504)
T PLN02760        239 EEFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKY  318 (504)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhc
Confidence                 01245666663    35789999999999999988    999999999999999999999 565431    1222


Q ss_pred             CCCccEEEecCcCcCCCC--cceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 017640          258 GLDADFLVASSHKMCGPT--GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAID  335 (368)
Q Consensus       258 ~~~~d~~~~s~~K~~g~~--G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~  335 (368)
                      ...+|+++.+  |.+|..  .+|.+++++++.+.+.+.....+..              ......+.+..+.++..++++
T Consensus       319 gv~PDivtlg--K~lggG~~PigAv~~~~~i~d~~~~~~~~~~~~--------------~h~~T~~gnPl~~Aaala~Le  382 (504)
T PLN02760        319 NIKPDLVSLA--KALSSAYMPIGAVLVSPEISDVIHSQSNKLGSF--------------AHGFTYSGHPVSCAVALEALK  382 (504)
T ss_pred             CCCCcEEEec--ccccCCccccceEeecHHHHhhhhcccccccCc--------------ccCCCCCCCHHHHHHHHHHHH
Confidence            3458876665  976542  3788999998877665321100000              000111346777777888888


Q ss_pred             HHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          336 YLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       336 ~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      .+++.   .+.++++++.+++.+.|++.
T Consensus       383 ~i~~~---~l~~~~~~~g~~l~~~L~~l  407 (504)
T PLN02760        383 IYKER---NIPEHVNKIAPRFQDGIKAF  407 (504)
T ss_pred             HHHhC---CHHHHHHHHHHHHHHHHHHH
Confidence            88763   45778888888888877654

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=99.61  E-value=5.2e-14  Score=139.37  Aligned_cols=220  Identities=12%  Similarity=0.063  Sum_probs=162.4

Q ss_pred             HHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC
Q 017640          112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN  191 (368)
Q Consensus       112 ~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~  191 (368)
                      .+.+.++.+|+.||++.  ..++++|+|.++..++.+.    +++||.|++...+|.|++.++    ...|+++++++..
T Consensus       196 ~i~eAe~~aA~~fgAd~--tyfvvNGTS~~n~av~~a~----~~~Gd~VLvdRN~HKSv~~aL----ilsga~PVYl~P~  265 (713)
T PRK15399        196 PHLEAEEYIARTFGAEQ--SYIVTNGTSTSNKIVGMYA----APAGSTLLIDRNCHKSLAHLL----MMSDVVPIWLKPT  265 (713)
T ss_pred             HHHHHHHHHHHHhCCCc--EEEEeCChHHHHHHHHHHh----cCCCCEEEeecccHHHHHHHH----HHcCCeeEEeccc
Confidence            46688999999999973  6788899999999999998    999999999999999987643    4559999999866


Q ss_pred             CC-----CCCCH-----HHHHHhcccC-----ceEEEEcccccccccccCHHHHHHHHHhcCCEE-EEecCCcCC--ccc
Q 017640          192 DD-----ESPDL-----DKLKEMLSRK-----TKLVVIHHISNMLASILPIEEIVHWSHDVGAKV-LVDACQSVP--HMV  253 (368)
Q Consensus       192 ~~-----~~~d~-----~~l~~~l~~~-----~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~l-i~D~a~~~~--~~~  253 (368)
                      .+     +.++.     +.+++++.+.     ++.++++++ +..|.++++++|++.|   |+.+ ++|+||+.-  ..+
T Consensus       266 ~n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~p-TYdGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~p  341 (713)
T PRK15399        266 RNALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNS-TYDGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFHP  341 (713)
T ss_pred             ccccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECC-CCCceeeCHHHHHHHh---CCCEEEEeccchhhhhcCc
Confidence            43     34555     8888888642     367888888 6689999999999999   6665 699998831  112


Q ss_pred             c--cCCCC----CccEE---EecCcCcCC-CCcceEEEEccccc-ccCCCcccCCcceeecccCCCCCCCCCCCCCCCCC
Q 017640          254 V--DVQGL----DADFL---VASSHKMCG-PTGIGFLFGKSDLL-SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTP  322 (368)
Q Consensus       254 ~--~~~~~----~~d~~---~~s~~K~~g-~~G~G~l~~~~~li-~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~  322 (368)
                      .  +....    +.|.+   +-|.||.++ ....+++.++..+- +++...+                    .-+.+.+|
T Consensus       342 ~~~~~sam~~~~~aD~~i~~tQStHKtL~alTQaS~iHvk~~vd~~~~n~a~--------------------~m~~STSP  401 (713)
T PRK15399        342 IYQGKSGMSGERVPGKVIFETQSTHKMLAAFSQASLIHIKGEYDEETFNEAF--------------------MMHTSTSP  401 (713)
T ss_pred             ccCCcChhhCCCCCCeeeeeeeehhccccccchheeeeecCCCCHHHHHHHH--------------------HHHcCCCc
Confidence            1  11111    35665   889999665 55588887755321 0111100                    23456689


Q ss_pred             CHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcC
Q 017640          323 AIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHN  365 (368)
Q Consensus       323 ~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g  365 (368)
                      +++.++++..+..++.....+.+.++..+++..+++.|.++.+
T Consensus       402 sY~LmASLD~a~~~m~~~~G~~l~~~~i~~a~~fR~~l~~~~~  444 (713)
T PRK15399        402 SYPIVASVETAAAMLRGNPGKRLINRSVERALHFRKEVQRLRE  444 (713)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999998633466778888888888888877654

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.60  E-value=1e-13  Score=133.23  Aligned_cols=246  Identities=13%  Similarity=0.085  Sum_probs=161.4

Q ss_pred             CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCC
Q 017640           76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLK  155 (368)
Q Consensus        76 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~  155 (368)
                      .|..++.+.+++.+.+....   ...  .    ..+...++.+.+++.+.- . +.++|++|+++|+..+++....  ..
T Consensus        64 lGh~~p~i~~a~~~~~~~~~---~~~--~----~~~~~~~la~~L~~~~~~-~-~~v~~~~sGseA~e~Aik~a~~--~~  130 (426)
T PRK00062         64 LGHAHPEVVEAVIEAAEKGL---SFG--A----PTELEVELAELVIELVPS-I-EMVRMVNSGTEATMSAIRLARG--YT  130 (426)
T ss_pred             cCCCCHHHHHHHHHHHHhCC---cCC--C----CCHHHHHHHHHHHHhCCC-C-CEEEEecCHHHHHHHHHHHHHH--Hh
Confidence            45789999999999987621   111  1    123445788888887642 2 3899999999999999997521  33


Q ss_pred             CCCEEEEcCCCCcccHHHHHHHHHH----cC-----CE-------EEEEeCCCCCCCCHHHHHHhcc---cCceEEEEcc
Q 017640          156 SGDEVILTVAEHHSAIVPWQLVAQK----TG-----AN-------LKFLNLNDDESPDLDKLKEMLS---RKTKLVVIHH  216 (368)
Q Consensus       156 ~gd~vl~~~~~~~s~~~~~~~~~~~----~g-----~~-------v~~v~~~~~~~~d~~~l~~~l~---~~~~~v~~~~  216 (368)
                      .++.|+..++.||+...........    .+     ..       ...++.     .|++.+++.+.   +++++|+++.
T Consensus       131 g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~i~~~~~~~aaiivEp  205 (426)
T PRK00062        131 GRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPY-----NDLEAVEELFEEYGDEIAAVIVEP  205 (426)
T ss_pred             CCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCC-----CCHHHHHHHHHhCCCcEEEEEEeC
Confidence            4678999999999865333222100    00     00       111111     27888888875   3678999998


Q ss_pred             cccccccccC----HHHHHHHHHhcCCEEEEecCCcCCcc----cccCCCCCccEEEecCcCcCCCC-cceEEEEccccc
Q 017640          217 ISNMLASILP----IEEIVHWSHDVGAKVLVDACQSVPHM----VVDVQGLDADFLVASSHKMCGPT-GIGFLFGKSDLL  287 (368)
Q Consensus       217 ~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~~~~~----~~~~~~~~~d~~~~s~~K~~g~~-G~G~l~~~~~li  287 (368)
                      ....+|.+.|    +++|.++|++||+++|+||+|.-...    ..+.....+|+  .+++|.+|.. .+|+++++++++
T Consensus       206 v~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g~~~~~~~~~~~pDi--~~~gK~l~~G~p~ga~~~~~~i~  283 (426)
T PRK00062        206 VAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVALGGAQGYYGVTPDL--TTLGKIIGGGLPVGAFGGRREIM  283 (426)
T ss_pred             CcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccCCccHHHHhCCCcch--HhhhhHhhCCCcceeeeEHHHHH
Confidence            8888999998    99999999999999999999872111    01111224675  4667976621 278899999988


Q ss_pred             ccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHh
Q 017640          288 SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       288 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~  362 (368)
                      +.+.+...   .               ..+...+.+....+++.++++.+.+.   .+.++++++.+++.+.|.+
T Consensus       284 ~~~~~~~~---~---------------~~~~T~~~~p~~~aaa~a~L~~~~~~---~~~~~~~~~~~~~~~~l~~  337 (426)
T PRK00062        284 EQLAPLGP---V---------------YQAGTLSGNPLAMAAGLATLKLLKEP---GFYEELEALTKRLAEGLKE  337 (426)
T ss_pred             HhhccCCC---c---------------eecccCcCCHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHH
Confidence            87752110   0               01111246666777788888887663   4566666777777666654

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=99.60  E-value=2.2e-13  Score=131.52  Aligned_cols=253  Identities=18%  Similarity=0.169  Sum_probs=166.3

Q ss_pred             CeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHH
Q 017640           67 KLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE  140 (368)
Q Consensus        67 ~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~  140 (368)
                      +--|+|..      ..|+.+|.+.+++.+.+......   +.      ..+...++.+.|.+.+..  .+.|.|++++|+
T Consensus        98 G~~yiD~~~g~g~~~lGh~~p~v~~av~~ql~~~~~~---~~------~~~~~~~lAe~l~~~~p~--~~~v~f~~SGsE  166 (474)
T PLN02482         98 GNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSF---GA------PCLLENVLAEMVIDAVPS--VEMVRFVNSGTE  166 (474)
T ss_pred             CCEEEEecccccccccCCCCHHHHHHHHHHHhhCCCC---CC------CCHHHHHHHHHHHHhCCC--CCEEEEeCChHH
Confidence            44567763      25577899999999998864211   11      123344677777777643  248999999999


Q ss_pred             HHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHH----------cCC------EEEEEeCCCCCCCCHHHHHHh
Q 017640          141 AINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK----------TGA------NLKFLNLNDDESPDLDKLKEM  204 (368)
Q Consensus       141 a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~----------~g~------~v~~v~~~~~~~~d~~~l~~~  204 (368)
                      |++.+++..+.  ...+++|+....+||+..+.+......          .|.      .+..++.+     |++.+++.
T Consensus       167 A~e~AlklAR~--~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~n-----d~~~l~~~  239 (474)
T PLN02482        167 ACMGVLRLARA--YTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYN-----DLEAVKKL  239 (474)
T ss_pred             HHHHHHHHHHH--hcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecCC-----ChHHHHHH
Confidence            99999997632  345568888899999865433221100          000      11222222     78888888


Q ss_pred             cc---cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCcCCcc-c----ccCCCCCccEEEecCcCcC
Q 017640          205 LS---RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQSVPHM-V----VDVQGLDADFLVASSHKMC  272 (368)
Q Consensus       205 l~---~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~~~~~-~----~~~~~~~~d~~~~s~~K~~  272 (368)
                      +.   .++.+|+++......|.+.|    +++|.++|++||+++|+||++. |.. .    .+.....+|+++.  +|.+
T Consensus       240 l~~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~t-GfR~g~~ga~~~~gv~PDi~t~--gK~l  316 (474)
T PLN02482        240 FEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMT-GFRIAYGGAQEYFGITPDLTTL--GKVI  316 (474)
T ss_pred             HHhCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CeecCcchHhHHhCCCCCEEEe--cchh
Confidence            85   35789999999999998887    7799999999999999999985 321 0    1111235888655  5966


Q ss_pred             CC-CcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHhCHHHHHHHH
Q 017640          273 GP-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGT--PAIGEAIGLGAAIDYLSTIGMQKIHAYE  349 (368)
Q Consensus       273 g~-~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt--~~~~~~~a~~~al~~~~~~g~~~i~~~~  349 (368)
                      |. ..+|.+++++++++.+.+.  +                  .-+..+|  .+..+.++..++|+.+++   +.+.+++
T Consensus       317 ggG~Pigav~g~~ei~~~~~~~--~------------------~~~~~~T~~gnpl~~aAala~L~~l~~---~~~~~~~  373 (474)
T PLN02482        317 GGGLPVGAYGGRREIMEMVAPA--G------------------PMYQAGTLSGNPLAMTAGIHTLKRLQQ---PGTYEYL  373 (474)
T ss_pred             hCCCceEEEEEcHHHHHhhccC--C------------------CcccccCcchhHHHHHHHHHHHHHHhc---cCHHHHH
Confidence            52 2278889999988776531  0                  0011223  455666667777777765   3466777


Q ss_pred             HHHHHHHHHHHHhh
Q 017640          350 VKWIICSIIVIQER  363 (368)
Q Consensus       350 ~~l~~~l~~~l~~~  363 (368)
                      .++.+++.+.|.++
T Consensus       374 ~~~g~~l~~~L~~l  387 (474)
T PLN02482        374 DKITKKLIQGILEA  387 (474)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777777777654

>PRK06541 hypothetical protein; Provisional

Probab=99.60  E-value=3.5e-13  Score=130.23  Aligned_cols=269  Identities=11%  Similarity=0.002  Sum_probs=170.2

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..      ..|+.+|.+.+++.+++....-....+  .    ..+...++.+.+++++..+- +.|.|+++++
T Consensus        50 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~~~~~~~~~~--~----~~~~~~~la~~l~~~~p~~~-~~v~f~~sGs  122 (460)
T PRK06541         50 RGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAFFPLWS--Y----AHPPAIELAERLAALAPGDL-NRVFFTTGGS  122 (460)
T ss_pred             CCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhCcCccccc--c----CCHHHHHHHHHHHHhCCCCc-CEEEEcCCcH
Confidence            455677763      356789999999999988642111000  0    12334467777888765433 3899999999


Q ss_pred             HHHHHHHHHccCCC--CC--CCCEEEEcCCCCcccHHHHHHHHHH------cC---CEEEEEeCCCC-----CCCC----
Q 017640          140 EAINLVAYSWGLSN--LK--SGDEVILTVAEHHSAIVPWQLVAQK------TG---ANLKFLNLNDD-----ESPD----  197 (368)
Q Consensus       140 ~a~~~~~~~~~~~~--~~--~gd~vl~~~~~~~s~~~~~~~~~~~------~g---~~v~~v~~~~~-----~~~d----  197 (368)
                      +|++.+++..+...  ..  .+.+|+....+||+...........      .+   ..+..+|...-     +.-+    
T Consensus       123 eAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  202 (460)
T PRK06541        123 EAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAF  202 (460)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccCCCHHHH
Confidence            99999998653210  11  2467888898898866443332110      00   11223332210     1012    


Q ss_pred             ----HHHHHHhcc----cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCC-cCCccc----ccCCCCC
Q 017640          198 ----LDKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQ-SVPHMV----VDVQGLD  260 (368)
Q Consensus       198 ----~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~-~~~~~~----~~~~~~~  260 (368)
                          ++.+++.+.    .++.+|+++..+++.|.+.|    +++|.++|++||+++|+||+| ++|...    .+.....
T Consensus       203 ~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~  282 (460)
T PRK06541        203 GRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYV  282 (460)
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCCC
Confidence                356777774    35688899999999999988    999999999999999999999 565431    1112335


Q ss_pred             ccEEEecCcCcCCCC--cceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 017640          261 ADFLVASSHKMCGPT--GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS  338 (368)
Q Consensus       261 ~d~~~~s~~K~~g~~--G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~  338 (368)
                      +|+++  ++|.+|..  .+|.+++++++.+.+.+.. +...                .......+..+.++..+.++.+.
T Consensus       283 PDivt--~gK~l~~G~~pigav~~~~~i~~~~~~~~-~~~~----------------~~~T~~gnp~~~aaala~l~~l~  343 (460)
T PRK06541        283 PDIIT--CAKGITSGYSPLGAMIASDRLFEPFLDGP-TMFL----------------HGYTFGGHPVSAAVALANLDIFE  343 (460)
T ss_pred             CCEEE--ecccccCCccceeEEEEcHHHHHHhhcCC-Cccc----------------cCCCCCCCHHHHHHHHHHHHHHH
Confidence            88886  56977632  3899999998877654321 0000                00011345566777777777776


Q ss_pred             HhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          339 TIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       339 ~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +.   .+.+++.++.+++.+.|.++
T Consensus       344 ~~---~~~~~~~~~g~~l~~~L~~l  365 (460)
T PRK06541        344 RE---GLLDHVRDNEPAFRATLEKL  365 (460)
T ss_pred             hc---cHHHHHHHHHHHHHHHHHHh
Confidence            53   35678888888888888765

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.60  E-value=4e-13  Score=129.10  Aligned_cols=257  Identities=19%  Similarity=0.172  Sum_probs=170.0

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..      ..|+..|.+.+++.+.+......   +.      ..+...++.+.|.+.+.. . +.+.|+++++
T Consensus        51 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~---~~------~~~~~~~la~~l~~~~p~-~-~~v~f~~sGs  119 (428)
T PRK12389         51 DGNKYIDYLAAYGPIITGHAHPHITKAITEAAENGVLY---GT------PTELEIEFAKMLKEAIPS-L-EKVRFVNSGT  119 (428)
T ss_pred             CCCEEEEccccccccccCCCCHHHHHHHHHHHHhCCcc---CC------CCHHHHHHHHHHHHhCCC-C-cEEEEeCCHH
Confidence            445677763      35678899999999988763211   11      123344677777777652 2 4899999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHc----------C------CEEEEEeCCCCCCCCHHHHHH
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKT----------G------ANLKFLNLNDDESPDLDKLKE  203 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~----------g------~~v~~v~~~~~~~~d~~~l~~  203 (368)
                      +|++.+++..+.  ...+..|+.....||+............          +      ..+..++.+     |++.+++
T Consensus       120 eA~e~AlklAr~--~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~  192 (428)
T PRK12389        120 EAVMTTIRVARA--YTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFN-----DIEALKE  192 (428)
T ss_pred             HHHHHHHHHHHH--hhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCC-----CHHHHHH
Confidence            999999997632  3445688888999998764433321100          0      011122221     7888888


Q ss_pred             hcc---cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCcCCccc----ccCCCCCccEEEecCcCcC
Q 017640          204 MLS---RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQSVPHMV----VDVQGLDADFLVASSHKMC  272 (368)
Q Consensus       204 ~l~---~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~~~~~~----~~~~~~~~d~~~~s~~K~~  272 (368)
                      .+.   .++.+|+++...+..|.+.|    +++|.++|++||+++|+||++......    .+.....+|+++.  +|.+
T Consensus       193 ~l~~~~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt~~~~a~~~~gv~PDivt~--gK~l  270 (428)
T PRK12389        193 ALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFMYGGAQDLLGVEPDLTAL--GKII  270 (428)
T ss_pred             HHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccccccccCcchhhHHhCCCCCeeee--chhh
Confidence            885   35789999999999999988    999999999999999999998732111    1112346888755  5965


Q ss_pred             CC-CcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Q 017640          273 GP-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVK  351 (368)
Q Consensus       273 g~-~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~  351 (368)
                      |. ..+|.+++++++.+.+.+.  +..                ..+.....|..+.++..++++.+++.   .+.+++.+
T Consensus       271 ggG~Pi~av~~~~~i~~~~~~~--~~~----------------~~~~T~~gnpl~~Aaala~L~~l~~~---~l~~~~~~  329 (428)
T PRK12389        271 GGGLPIGAYGGRKDIMEQVAPL--GPA----------------YQAGTMAGNPASMAAGIACLEVLQQE---GVYEKLDR  329 (428)
T ss_pred             cCCCceeEEeEHHHHHhhhccC--CCc----------------ccccCCccCHHHHHHHHHHHHHHhcc---cHHHHHHH
Confidence            42 2278889999988766431  000                01111245666777788888888763   36677888


Q ss_pred             HHHHHHHHHHhh
Q 017640          352 WIICSIIVIQER  363 (368)
Q Consensus       352 l~~~l~~~l~~~  363 (368)
                      +.+++.+.|+++
T Consensus       330 ~g~~l~~~L~~l  341 (428)
T PRK12389        330 LGAMLEEGILEA  341 (428)
T ss_pred             HHHHHHHHHHHH
Confidence            888888777653

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.60  E-value=3.6e-13  Score=130.30  Aligned_cols=263  Identities=16%  Similarity=0.202  Sum_probs=163.9

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..      ..|+.+|.+.+++.+.++.....   +..   ....+...++.+.|++++.....+.|.|+++++
T Consensus        52 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~---~~~---~~~~~~~~~la~~L~~~~p~~~~~~v~f~~sGs  125 (451)
T PRK06918         52 DGNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQYIHT---GFN---VMMYEPYIELAEKLAALAPGSFDKKVLFLNSGA  125 (451)
T ss_pred             CCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHHhccCc---ccc---ccccHHHHHHHHHHHHhCCCCCCCEEEEcCCcH
Confidence            344577763      35678999999999998864211   110   001234457888888887643223899999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHH-------cC---CEEEEEeCCC-----CCCCC-------
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK-------TG---ANLKFLNLND-----DESPD-------  197 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~-------~g---~~v~~v~~~~-----~~~~d-------  197 (368)
                      +|++.+++..+.  ...+..|+....+||+.......+...       .+   ..+..+|...     .+..+       
T Consensus       126 eA~e~AlklAr~--~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (451)
T PRK06918        126 EAVENAVKIARK--YTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFM  203 (451)
T ss_pred             HHHHHHHHHHHH--HhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHH
Confidence            999999987632  344567888899999876544433210       00   0122233221     11100       


Q ss_pred             HHHHHHhc----c-cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc--cccCCCC--CccE
Q 017640          198 LDKLKEML----S-RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM--VVDVQGL--DADF  263 (368)
Q Consensus       198 ~~~l~~~l----~-~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~--~~~~~~~--~~d~  263 (368)
                      ++.+++.+    . .++.+|+++..+...|.+.|    +++|.++|++||+++|+||++. ++..  .+....+  .+|+
T Consensus       204 ~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~pDi  283 (451)
T PRK06918        204 IEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPDL  283 (451)
T ss_pred             HHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCCCCCE
Confidence            12233332    2 35788999988887888776    8899999999999999999986 3322  1122222  3775


Q ss_pred             EEecCcCcCCCCc--ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC
Q 017640          264 LVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG  341 (368)
Q Consensus       264 ~~~s~~K~~g~~G--~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g  341 (368)
                      +  +++|.+++ |  +|++++++++++.+.+...+.                     ....+....++..++++++.+.+
T Consensus       284 ~--t~sK~l~~-G~pig~v~~~~~i~~~~~~~~~~~---------------------T~~g~~l~~aaa~a~l~~i~~~~  339 (451)
T PRK06918        284 I--TVSKSLGA-GVPISGVIGRKEIMDESAPGELGG---------------------TYAGSPLGCAAALAVLDIIEKEN  339 (451)
T ss_pred             E--eeehhhcC-CCccEEEEEcHHHHhccCCCCcCc---------------------CCCcCHHHHHHHHHHHHHHHHCC
Confidence            4  67897773 4  999999999887765432211                     12466666777777888776633


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Q 017640          342 MQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       342 ~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                         +.++++++.+++.+.++++
T Consensus       340 ---~~~~~~~~g~~l~~~l~~l  358 (451)
T PRK06918        340 ---LNDRAIELGKVVMNRFEEM  358 (451)
T ss_pred             ---HHHHHHHHHHHHHHHHHHH
Confidence               4455555555655555443

>PRK06062 hypothetical protein; Provisional

Probab=99.60  E-value=4.6e-13  Score=129.18  Aligned_cols=263  Identities=12%  Similarity=0.075  Sum_probs=169.0

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..+      .|+..|.+.+++.+.+........ .  .    ..+...++.+.|+++..... +.|.|+++++
T Consensus        51 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~-~--~----~~~~~~~lae~L~~~~p~~~-~~v~f~~SGs  122 (451)
T PRK06062         51 EGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLCTVAP-A--H----ANDARSEAARLIAERAPGDL-SKVFFTNGGA  122 (451)
T ss_pred             CCCEEEEcccCHHhhcCCCCCHHHHHHHHHHHHhcCCcCC-c--c----CCHHHHHHHHHHHHhCCCCC-CEEEEcCChH
Confidence            4556777743      568899999999999886422111 0  1    13334567788888775332 3899999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHc---C-----CEEEEEeCCCCCC------CC-------H
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKT---G-----ANLKFLNLNDDES------PD-------L  198 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~---g-----~~v~~v~~~~~~~------~d-------~  198 (368)
                      +|++.+++..+.  ...+.+|+.....||+............   .     ..+..++......      -|       +
T Consensus       123 EAve~AlklAr~--~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  200 (451)
T PRK06062        123 DANEHAVRMARL--HTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERAL  200 (451)
T ss_pred             HHHHHHHHHHHH--hhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHH
Confidence            999999997632  3445689989999998764433332100   0     0112222111110      12       5


Q ss_pred             HHHHHhcc----cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEE
Q 017640          199 DKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLV  265 (368)
Q Consensus       199 ~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~  265 (368)
                      +.+++.++    +++.+|+++......|.+.|    +++|.++|++||+++|+||+++ +|..    ..+.....+|+++
T Consensus       201 ~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv~PDi~t  280 (451)
T PRK06062        201 AHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGVVPDLIT  280 (451)
T ss_pred             HHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcCCCCCeee
Confidence            67777774    35789999999999999988    9999999999999999999987 4332    1122234689776


Q ss_pred             ecCcCcCCCC--cceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHH
Q 017640          266 ASSHKMCGPT--GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQ  343 (368)
Q Consensus       266 ~s~~K~~g~~--G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~  343 (368)
                      .  +|.+|..  .+|.+++++++.+.+.+.....+                .   ..+.+..+.++..++|+.+++.+  
T Consensus       281 ~--gK~lggG~~Pigav~~~~~i~~~~~~~~~~~~----------------~---T~~gnpl~~Aaa~a~L~~l~~~~--  337 (451)
T PRK06062        281 F--AKGVNSGYVPLGGVAISEAIAATFADRPYPGG----------------L---TYSGHPLACAAAVATINAMEEEG--  337 (451)
T ss_pred             e--chhhhcCCcCcEEEEEcHHHHHHhccCCCCCC----------------C---CCCCCHHHHHHHHHHHHHHHhcC--
Confidence            5  5966542  37888888888776642110000                0   11456777778888888887743  


Q ss_pred             HHHHHHHHHH-HHHHHHHHh
Q 017640          344 KIHAYEVKWI-ICSIIVIQE  362 (368)
Q Consensus       344 ~i~~~~~~l~-~~l~~~l~~  362 (368)
                       +.+++.++. +++.+.|++
T Consensus       338 -l~~~~~~~G~~~l~~~L~~  356 (451)
T PRK06062        338 -IVENAARIGAEVLGPGLRE  356 (451)
T ss_pred             -HHHHHHHHHHHHHHHHHHH
Confidence             556666665 355555544

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.60  E-value=5.3e-13  Score=128.43  Aligned_cols=272  Identities=13%  Similarity=0.102  Sum_probs=170.4

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..+      .|+..|.+.+++.+.++.+...+..+  .    ..+...++.+.|++++...- +.|.|+++++
T Consensus        44 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~--~----~~~~~~~la~~l~~~~p~~~-~~v~f~~sGs  116 (442)
T PRK13360         44 DGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAPAFQ--M----GHPKAFELANRIAEIAPGGL-NHVFFTNSGS  116 (442)
T ss_pred             CCCEEEECchhHHHhccCCCCHHHHHHHHHHHHhCCCcccCC--c----CCHHHHHHHHHHHHhCCCCC-CEEEEeCCcH
Confidence            4556888743      47889999999999988642211100  0    12334467888888874322 3899999999


Q ss_pred             HHHHHHHHHccCCC---C-CCCCEEEEcCCCCcccHHHHHHHHH------HcC---CEEEEEeCCCC-----CCC-----
Q 017640          140 EAINLVAYSWGLSN---L-KSGDEVILTVAEHHSAIVPWQLVAQ------KTG---ANLKFLNLNDD-----ESP-----  196 (368)
Q Consensus       140 ~a~~~~~~~~~~~~---~-~~gd~vl~~~~~~~s~~~~~~~~~~------~~g---~~v~~v~~~~~-----~~~-----  196 (368)
                      +|++.+++......   - ..+.+|+.....||+.......+..      .++   ..+..+|...+     +..     
T Consensus       117 eA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  196 (442)
T PRK13360        117 ESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEH  196 (442)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHH
Confidence            99999998653210   0 1245799999999986432221110      001   11233333211     000     


Q ss_pred             ---CHHHHHHhcc----cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCC-cCCcc----cccCCCCC
Q 017640          197 ---DLDKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQ-SVPHM----VVDVQGLD  260 (368)
Q Consensus       197 ---d~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~-~~~~~----~~~~~~~~  260 (368)
                         .++.|++.+.    +++.+|+++......|.+.|    +++|.++|++||+++|+||+| ++|..    ..+.....
T Consensus       197 ~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~  276 (442)
T PRK13360        197 GAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVT  276 (442)
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCC
Confidence               1456777774    45789999999999999988    999999999999999999998 55542    11222346


Q ss_pred             ccEEEecCcCcCCCC--cceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 017640          261 ADFLVASSHKMCGPT--GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS  338 (368)
Q Consensus       261 ~d~~~~s~~K~~g~~--G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~  338 (368)
                      +|+++.  +|.+|..  .+|.+++++++.+.+......+..    +.         ..+ ..+.+..+.+++.++++.++
T Consensus       277 PDivt~--gK~l~gG~~P~gav~~~~~i~~~~~~~~~~~~~----~~---------~~~-T~~g~pl~~aaa~a~L~~l~  340 (442)
T PRK13360        277 PDLLTC--AKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIE----FF---------HGY-TYSGHPLACAAALATLDLYE  340 (442)
T ss_pred             Cceeee--eeccccCccceEEEEEcHHHHHHhhcCCccccc----cc---------cCC-CCCCCHHHHHHHHHHHHHHH
Confidence            888755  5976532  277888898887654321000000    00         001 11457777888888899888


Q ss_pred             HhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          339 TIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       339 ~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +.+   +.++..++.+++.+.|++.
T Consensus       341 ~~~---l~~~~~~~g~~l~~~l~~l  362 (442)
T PRK13360        341 REG---LLTRAARLAPYWEDALHSL  362 (442)
T ss_pred             hCC---HHHHHHHHHHHHHHHHHHh
Confidence            743   5567777777777777654

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.59  E-value=2.3e-13  Score=127.39  Aligned_cols=232  Identities=16%  Similarity=0.195  Sum_probs=156.7

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..      ..|+.+|.+.+++++.++.....   +...    ..+...++.+.++++.+.+   .++|+++++
T Consensus        22 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~---~~~~----~~~~~~~la~~l~~~~~~~---~v~~~~SGs   91 (364)
T PRK04013         22 QGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVVA---GPMF----EHEEKEEMLEELSKWVNYE---YVYMGNSGT   91 (364)
T ss_pred             CCCEEEEcccChhhccCCCCCHHHHHHHHHHHHhcCCc---cCCc----CCHHHHHHHHHHHhhcCCC---EEEEeCchH
Confidence            344577763      35678899999999998864221   1111    1344557888888888643   889999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHH----cC-----CEEEEEeCCCCCCCCHHHHHHhcccCce
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK----TG-----ANLKFLNLNDDESPDLDKLKEMLSRKTK  210 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~----~g-----~~v~~v~~~~~~~~d~~~l~~~l~~~~~  210 (368)
                      +|++.+++..+.  ...+++|+..+.+||+...........    .+     ..+..++.+     |++.+++.+.++++
T Consensus        92 eA~e~Alklar~--~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~~-----d~~~l~~~i~~~~a  164 (364)
T PRK04013         92 EAVEAALKFARL--YTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPFN-----DVEAAKEAITKETA  164 (364)
T ss_pred             HHHHHHHHHHHH--HhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecCC-----CHHHHHHHhcCCcE
Confidence            999999998742  233478999999999865433221100    01     112333332     78899999988899


Q ss_pred             EEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc---CCcc-cccCCCCCccEEEecCcCcCCC-CcceEEE
Q 017640          211 LVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS---VPHM-VVDVQGLDADFLVASSHKMCGP-TGIGFLF  281 (368)
Q Consensus       211 ~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~---~~~~-~~~~~~~~~d~~~~s~~K~~g~-~G~G~l~  281 (368)
                      +|++++.+...|...+    +++|.++|++||+++|+||+++   .|.. ..+.....+|+++.+  |.+|. ..+|.++
T Consensus       165 AvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~RtG~~~a~~~~gv~PDiv~~g--K~lggG~P~~a~~  242 (364)
T PRK04013        165 AVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGLRTGKFLAIEHYKVEPDIVTMG--KGIGNGVPVSLTL  242 (364)
T ss_pred             EEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCCCchhHHHhcCCCCCEEEec--ccccCCceeEEEE
Confidence            9999999888887665    8999999999999999999987   2221 112223468988885  96553 2277777


Q ss_pred             EcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC
Q 017640          282 GKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG  341 (368)
Q Consensus       282 ~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g  341 (368)
                      .++++.    +...+                     .....|..+.++..+.++.+++.+
T Consensus       243 ~~~~~~----~~~~~---------------------~T~~gnp~~~aaa~a~l~~i~~~~  277 (364)
T PRK04013        243 TNFDVE----RGKHG---------------------STFGGNPLACKAVAVTLRILRRER  277 (364)
T ss_pred             eccccc----CCCcC---------------------CCCCcCHHHHHHHHHHHHHHHhcc
Confidence            776641    11111                     111467777788888888888754

>PRK07482 hypothetical protein; Provisional

Probab=99.59  E-value=3e-13  Score=130.79  Aligned_cols=271  Identities=11%  Similarity=-0.001  Sum_probs=168.8

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..+      .|+.+|.+.+++.+++...... +.    ......+...++.+.|++.+...- +.+.|+++++
T Consensus        48 dG~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~~~~~~-~~----~~~~~~~~~~~lAe~L~~~~p~~~-~~v~f~~sGS  121 (461)
T PRK07482         48 QGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKELAYY-HT----YVGHGTEASITLSKRIIDRAPAGM-SKVYYGLSGS  121 (461)
T ss_pred             CCCEEEEcccchhhhcCCCCCHHHHHHHHHHHHhcCcc-cc----ccccCCHHHHHHHHHHHHhCCCCc-CEEEEeCchH
Confidence            4556777653      4678999999999998874211 00    000113444567888888775332 3899999999


Q ss_pred             HHHHHHHHHccCC----CCCCCCEEEEcCCCCcccHHHHHHHHH------HcC---CEEEEEeCCCCCC-----------
Q 017640          140 EAINLVAYSWGLS----NLKSGDEVILTVAEHHSAIVPWQLVAQ------KTG---ANLKFLNLNDDES-----------  195 (368)
Q Consensus       140 ~a~~~~~~~~~~~----~~~~gd~vl~~~~~~~s~~~~~~~~~~------~~g---~~v~~v~~~~~~~-----------  195 (368)
                      +|++.+++..+..    ....+.+|+.....||+.......+..      ..+   ..+..++......           
T Consensus       122 EAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  201 (461)
T PRK07482        122 DANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQF  201 (461)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHH
Confidence            9999999876321    012246788889999985432222110      011   1122222211000           


Q ss_pred             --CCHHHHHHhcc----cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCC
Q 017640          196 --PDLDKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLD  260 (368)
Q Consensus       196 --~d~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~  260 (368)
                        -+++.+++.+.    +++.+|+++.++...|.+.|    +++|.++|++||+++|+||++. +|..    ..+.....
T Consensus       202 ~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~  281 (461)
T PRK07482        202 SAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGIE  281 (461)
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCCC
Confidence              13567777773    35799999999888888876    8999999999999999999976 4432    11223446


Q ss_pred             ccEEEecCcCcCCCC--cceEEEEcccccccCCCcc--cCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 017640          261 ADFLVASSHKMCGPT--GIGFLFGKSDLLSAMPPFL--GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY  336 (368)
Q Consensus       261 ~d~~~~s~~K~~g~~--G~G~l~~~~~li~~l~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~  336 (368)
                      +|+++.+  |.+|..  .+|.+++++++.+.+....  .|...                .....+.|..+.++..++++.
T Consensus       282 PDiv~~g--Kgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~----------------h~~T~~gnpl~~Aaa~a~L~~  343 (461)
T PRK07482        282 PDLITVA--KGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAIG----------------HGWTYSGHPICAAAALANLDI  343 (461)
T ss_pred             CCEEEEc--cccccCccccceeeecHHHHHHHhcccccCCccc----------------cCCCCCcCHHHHHHHHHHHHH
Confidence            9999976  965432  4788888888765544211  00000                001125677777888888888


Q ss_pred             HHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          337 LSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       337 ~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +++.   .+.++.+++.+++.+.|++.
T Consensus       344 ~~~~---~l~~~~~~~g~~l~~~L~~l  367 (461)
T PRK07482        344 LERE---NLVGNAAEVGAYFRARLRAA  367 (461)
T ss_pred             HHhC---CHHHHHHHHHHHHHHHHHHH
Confidence            8774   35566666777776666543

>PRK07046 aminotransferase; Validated

Probab=99.59  E-value=4.4e-13  Score=129.19  Aligned_cols=257  Identities=14%  Similarity=0.093  Sum_probs=169.1

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++--|+|..      ..|+.+|.+.+++++.+......   +.      ..+...++.+.|.+.++.   +.|.|++++|
T Consensus        73 DG~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~~~~~---~~------~~~~~~~lAe~l~~~~~~---~~v~F~nSGt  140 (453)
T PRK07046         73 DGHRYDDFCLGDTGAMFGHSPAPVARALAEQARRGLTT---ML------PSEDAAWVGEELARRFGL---PYWQVATTAT  140 (453)
T ss_pred             CCCEEEEecccccccccCCCCHHHHHHHHHHHHhCCCC---CC------CCHHHHHHHHHHHHHhCC---CEEEEECCHH
Confidence            344577753      24577899999999998863211   11      123444677888888753   3899999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcC----------C------EEEEEeCCCCCCCCHHHHHH
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTG----------A------NLKFLNLNDDESPDLDKLKE  203 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g----------~------~v~~v~~~~~~~~d~~~l~~  203 (368)
                      +|++.+++..+.  ...++.|+..+.+||+..+...... ..+          .      .+..++.+     |++.+++
T Consensus       141 EA~e~AlrlAR~--~TGr~~ii~~~g~YHG~~d~~l~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~n-----d~~~l~~  212 (453)
T PRK07046        141 DANRFVLRWARA--VTGRPKILVFNGCYHGTVDDVFVDL-VDGRPVQRPGLLGQVHDLTATTRVVEFN-----DLAALEA  212 (453)
T ss_pred             HHHHHHHHHHHH--hhCCCEEEEECCCCCCCcHHhHhhc-cCCCCCCCCCCCCCCccccCceEeeCCC-----CHHHHHH
Confidence            999999997632  3456789999999998643322211 001          0      11222221     8899999


Q ss_pred             hcc-cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc----CCcccccCCCCCccEEEecCcCcCC-
Q 017640          204 MLS-RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS----VPHMVVDVQGLDADFLVASSHKMCG-  273 (368)
Q Consensus       204 ~l~-~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~----~~~~~~~~~~~~~d~~~~s~~K~~g-  273 (368)
                      .+. .++.+|+++......|.+.|    ++++.++|++||+++|+||++.    .|... ......+|+++.  .|.+| 
T Consensus       213 ~l~~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg~~-~~~gv~PDi~t~--gK~lgg  289 (453)
T PRK07046        213 ALADGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGYT-RAHGLEPDFLVV--GKPIAG  289 (453)
T ss_pred             HhCCCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcchh-HHhCCCccceee--hhhhcC
Confidence            885 46789999999988888877    8999999999999999999985    33221 222346898875  59654 


Q ss_pred             CCcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Q 017640          274 PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAG--TPAIGEAIGLGAAIDYLSTIGMQKIHAYEVK  351 (368)
Q Consensus       274 ~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--t~~~~~~~a~~~al~~~~~~g~~~i~~~~~~  351 (368)
                      +..+|.+++++++.+.+.+.......              ..-+..+  ..|..+.++..+.++.+.+.   .+.+++++
T Consensus       290 G~Pi~av~g~~~i~~~~~~~~~~~~~--------------~~~~~~~T~~gnpl~~aa~~a~L~~l~~~---~~~~~~~~  352 (453)
T PRK07046        290 GVPCAVYGFSAELAERAQAAKASAPP--------------GHSGIGTTLSANALAMAAMRATLAEVMTE---AAYAHMLA  352 (453)
T ss_pred             CCcceeeeehHHHHHHHhhccccCCC--------------CCceeCCCCcccHHHHHHHHHHHHHHhcc---cHHHHHHH
Confidence            33389999999988766532110000              0001122  34666777777778877653   34667777


Q ss_pred             HHHHHHHHHHh
Q 017640          352 WIICSIIVIQE  362 (368)
Q Consensus       352 l~~~l~~~l~~  362 (368)
                      +.+++.+.|.+
T Consensus       353 ~g~~l~~~L~~  363 (453)
T PRK07046        353 LAARLAAGLRA  363 (453)
T ss_pred             HHHHHHHHHHH
Confidence            77777777764

>PRK06105 aminotransferase; Provisional

Probab=99.58  E-value=3.7e-13  Score=130.14  Aligned_cols=273  Identities=10%  Similarity=0.025  Sum_probs=169.4

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..      ..|+.+|.+.+++.++++...-...     .+....+...++.+.|++.+..+- +.|.|+++++
T Consensus        46 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~-----~~~~~~~~~~~lae~L~~~~p~~~-~~v~f~~SGs  119 (460)
T PRK06105         46 AGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPFYHT-----FSHKSHGPVIDLAEKLVAMAPVPM-SKVFFTNSGS  119 (460)
T ss_pred             CCCEEEEcchhHHhccCCCCCHHHHHHHHHHHHhCCCeec-----ccccCCHHHHHHHHHHHHhCCCCC-CEEEEeCCcH
Confidence            455677764      2557899999999999886421100     000113344568888888875432 3899999999


Q ss_pred             HHHHHHHHHccCC----CCCCCCEEEEcCCCCcccHHHHHHHHH------HcC---CEEEEEeCCCCCC-----------
Q 017640          140 EAINLVAYSWGLS----NLKSGDEVILTVAEHHSAIVPWQLVAQ------KTG---ANLKFLNLNDDES-----------  195 (368)
Q Consensus       140 ~a~~~~~~~~~~~----~~~~gd~vl~~~~~~~s~~~~~~~~~~------~~g---~~v~~v~~~~~~~-----------  195 (368)
                      +|++.+++.....    ....+.+|+.....||+.......+..      ..+   ..+..++......           
T Consensus       120 eAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  199 (460)
T PRK06105        120 EANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAF  199 (460)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccccCCCChHHH
Confidence            9999999874211    012345788888888876532211110      001   0122222211000           


Q ss_pred             --CCHHHHHHhcc----cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCC-cCCcc----cccCCCCC
Q 017640          196 --PDLDKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQ-SVPHM----VVDVQGLD  260 (368)
Q Consensus       196 --~d~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~-~~~~~----~~~~~~~~  260 (368)
                        ..++++++.+.    .++.+|+++..+...|.+.|    +++|.++|++||+++|+||++ ++|..    ..+.....
T Consensus       200 ~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~  279 (460)
T PRK06105        200 ATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGIK  279 (460)
T ss_pred             HHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCCC
Confidence              01356777663    35789999999998898887    999999999999999999998 46543    12223346


Q ss_pred             ccEEEecCcCcCCCC--cceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 017640          261 ADFLVASSHKMCGPT--GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS  338 (368)
Q Consensus       261 ~d~~~~s~~K~~g~~--G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~  338 (368)
                      +|+++.+  |.+|..  .+|.+++++++.+.+.+.....+..              ........|..+.++..++++.++
T Consensus       280 PDi~~~g--K~lggG~~P~~av~~~~~i~~~~~~~~~~~~~~--------------~h~~T~~gnpl~~aaa~a~L~~i~  343 (460)
T PRK06105        280 PDILVMS--KQLSSSYQPLSAVLMNEKVYDPIADESGKIGTF--------------GHGFTASGHPVAAAVALENLAIIE  343 (460)
T ss_pred             CCeeeee--cccccCcccceEEEEcHHHHHHHhcccccCccc--------------ccCCCCCCCHHHHHHHHHHHHHHH
Confidence            8988766  966543  3789999998876554321000000              000111455666667777888888


Q ss_pred             HhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          339 TIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       339 ~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +.   .+.++++++.+++.+.|.++
T Consensus       344 ~~---~l~~~v~~~g~~l~~~L~~l  365 (460)
T PRK06105        344 ER---DLVGNAAERGARLQARLRAL  365 (460)
T ss_pred             hc---cHHHHHHHHHHHHHHHHHHh
Confidence            63   45677777777777777654

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.58  E-value=2.8e-13  Score=130.32  Aligned_cols=264  Identities=10%  Similarity=0.038  Sum_probs=158.3

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++..|+|..+      .|..++.+.+++.+++.... ...... .    ..+...++.+.+.+..+.+..+.++|+++++
T Consensus        39 dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~~~~~~~-~~~~~~-~----~~~~~~~la~~l~~~~~~~~~~~~~f~~sGs  112 (425)
T PRK08088         39 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLS-HTCFQV-L----AYEPYLELCEKMNQKVPGDFAKKTLLVTTGS  112 (425)
T ss_pred             CCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHhhCC-Cccccc-c----CCHHHHHHHHHHHHhCCCCCCCEEEEeCCcH
Confidence            3445676633      46779999999999988642 111000 0    0122336777777777654323788998889


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHc-----CC-----EEEE--EeCCCCCC-C--CHHHHHHh
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKT-----GA-----NLKF--LNLNDDES-P--DLDKLKEM  204 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~-----g~-----~v~~--v~~~~~~~-~--d~~~l~~~  204 (368)
                      +|+..+++....  ...+..|+..+++||+............     |.     .+..  +|.+.++. .  +++.|++.
T Consensus       113 ea~e~Alklar~--~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~  190 (425)
T PRK08088        113 EAVENAVKIARA--ATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGVSEDDAIASIERI  190 (425)
T ss_pred             HHHHHHHHHHHH--HhCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCccccCccHHHHHHHHHHH
Confidence            988888876521  3344567777999998765544432100     00     0111  22211110 0  14568887


Q ss_pred             cc-----cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCccc--ccCCCCCccEEEecCcCcC
Q 017640          205 LS-----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV--VDVQGLDADFLVASSHKMC  272 (368)
Q Consensus       205 l~-----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~~--~~~~~~~~d~~~~s~~K~~  272 (368)
                      +.     ++.++|+++......|.+.+    +++|.++|++||+++|+|++|+ ++...  ...+..+.+.-+.|++|.+
T Consensus       191 l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~~~~pdi~s~sK~l  270 (425)
T PRK08088        191 FKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMGVAADLTTFAKSI  270 (425)
T ss_pred             HHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhHHhhcCCCCCEEEEeccc
Confidence            74     35688888888877787776    8999999999999999999987 22221  1111222233357888987


Q ss_pred             CCCc-ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Q 017640          273 GPTG-IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVK  351 (368)
Q Consensus       273 g~~G-~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~  351 (368)
                      ++.- +|++++++++++.+.....+                     ...+.+....+++...++.....   .+.++.++
T Consensus       271 ~~G~rig~v~~~~~~~~~~~~~~~~---------------------~t~~~~~~~~~a~~~~l~~~~~~---~~~~~~~~  326 (425)
T PRK08088        271 AGGFPLAGVTGRAEVMDAIAPGGLG---------------------GTYAGNPIACAAALAVLKVFEQE---NLLQKANA  326 (425)
T ss_pred             cCCCcceeeEecHHHHhhcCCCCCC---------------------CCCCcCHHHHHHHHHHHHHHHhc---CHHHHHHH
Confidence            7422 89999999988877643221                     11145556667777777766542   33444444


Q ss_pred             HHHHHHHHHH
Q 017640          352 WIICSIIVIQ  361 (368)
Q Consensus       352 l~~~l~~~l~  361 (368)
                      +.+++.+.+.
T Consensus       327 ~~~~~~~~l~  336 (425)
T PRK08088        327 LGEKLKDGLL  336 (425)
T ss_pred             HHHHHHHHHH
Confidence            4444444443

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=2.7e-14  Score=130.14  Aligned_cols=253  Identities=22%  Similarity=0.231  Sum_probs=179.2

Q ss_pred             EEeccCC-CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHH
Q 017640           69 VYLDNAA-TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAY  147 (368)
Q Consensus        69 i~l~~~~-~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~  147 (368)
                      -||+.+. .+++.+.+.+++..+-......    .+.  -+..+..+++++.+|+++|.++  .++|..|- ..+.+.+.
T Consensus       145 NYLGFa~~~g~ca~~~~~~~~kygl~~css----~~e--~G~~~~hkelE~l~A~f~g~e~--a~vF~mGf-~TNs~~~p  215 (519)
T KOG1357|consen  145 NYLGFAQSVGPCAEASLKSFDKYGLSRCSS----RHE--AGTTEEHKELEELVARFLGVED--AIVFSMGF-ATNSMNIP  215 (519)
T ss_pred             ccccccccCCcCChHHHHHHHHhccccccc----chh--cccHHHHHHHHHHHHHhcCCcc--eEEEeccc-cccccCcc
Confidence            3555543 3478888888877664432111    111  1235677789999999999984  67887773 45666666


Q ss_pred             HccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc-------C------ceEEEE
Q 017640          148 SWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-------K------TKLVVI  214 (368)
Q Consensus       148 ~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~-------~------~~~v~~  214 (368)
                      ++    +.+|.-|+-.+.+|.|..    .-|+..|+.++....+     |..+||+.|.+       +      ..+|+.
T Consensus       216 ~l----~~~gsLIiSDelNHaSi~----~GaRLSgAtiRVfkHN-----dm~~LEr~Lrd~I~~gqP~Thrp~kki~iiv  282 (519)
T KOG1357|consen  216 SL----LGKGSLIISDELNHASLI----TGARLSGATTRVFRHN-----DMQGLERLLRDAIVYGQPKTHRPWKKILICV  282 (519)
T ss_pred             ee----ecCCcceeeccccchhee----ccccccCceEEEEecC-----CHHHHHHHHHHHHhcCCCCcCCcchheeeee
Confidence            66    889999999999999854    4456779999999988     88888887753       2      247788


Q ss_pred             cccccccccccCHHHHHHHHHhcCCEEEEecCCcCCccc---------ccCCCCCccEEEecCcCcCCCCcceEEEEccc
Q 017640          215 HHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMV---------VDVQGLDADFLVASSHKMCGPTGIGFLFGKSD  285 (368)
Q Consensus       215 ~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~---------~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~  285 (368)
                      ....+.-|.+..+.++.++++++.++++.|++|+.|...         +..+..+.|++.+.+.|.||..| |++..+++
T Consensus       283 egiysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfga~G-Gyiagsk~  361 (519)
T KOG1357|consen  283 EGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFGAAG-GYIAGSKE  361 (519)
T ss_pred             ccceeccCeecccHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhccccc-ceecCcHH
Confidence            899999999999999999999999999999999987762         12334468999999999999986 99999999


Q ss_pred             ccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-h---CHHHHHHHHHHHHHHHHHHHH
Q 017640          286 LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST-I---GMQKIHAYEVKWIICSIIVIQ  361 (368)
Q Consensus       286 li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~-~---g~~~i~~~~~~l~~~l~~~l~  361 (368)
                      +++.++.....                   .....+.+.+.......+++.+.. .   ..+...+++.+...+++..++
T Consensus       362 lid~lrt~s~~-------------------~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~  422 (519)
T KOG1357|consen  362 LIDYLRTPSPS-------------------ALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQ  422 (519)
T ss_pred             HHhhhccCCCc-------------------eeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhh
Confidence            99887733221                   111112222222333445555542 1   245555777788888887776


Q ss_pred             hh
Q 017640          362 ER  363 (368)
Q Consensus       362 ~~  363 (368)
                      +.
T Consensus       423 ~~  424 (519)
T KOG1357|consen  423 KM  424 (519)
T ss_pred             cC
Confidence            54

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.58  E-value=5e-13  Score=127.95  Aligned_cols=258  Identities=15%  Similarity=0.165  Sum_probs=166.2

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..+      .|+..|.+.+++.+.+......   +  .    ..+...++.+.|.+.++... +.|.|+++++
T Consensus        51 dG~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~---~--~----~~~~~~~la~~L~~~~~~~~-~~v~f~~SGs  120 (433)
T PRK00615         51 LGKTFIDFCGSWGSLIHGHSHPKICDAIQQGAERGTSY---G--L----TSEQEILFAEELFSYLGLED-HKIRFVSSGT  120 (433)
T ss_pred             CCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCCCC---C--C----CCHHHHHHHHHHHHhCCCCc-CEEEEeCchH
Confidence            3445777632      4678999999999998764211   1  1    12334467777888775432 4899999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHH-HHHHHHHcCCE---E-EEE--e-CCCC----CCCCHHHHHHhcc-
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVP-WQLVAQKTGAN---L-KFL--N-LNDD----ESPDLDKLKEMLS-  206 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~-~~~~~~~~g~~---v-~~v--~-~~~~----~~~d~~~l~~~l~-  206 (368)
                      +|++.+++..+.  ...+..|+.....||+..+. +... ...+..   . ...  + ....    ..-|++.+++.+. 
T Consensus       121 EA~e~AiklAr~--~tgr~~ii~~~~~yHG~td~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~  197 (433)
T PRK00615        121 EATMTAVRLARG--ITGRSIIIKFLGCYHGHADTLLQGI-SFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNS  197 (433)
T ss_pred             HHHHHHHHHHHH--hhCCCEEEEEcCccCCCCcccCccc-ccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHh
Confidence            999999997632  33456788888888885322 1111 011100   0 000  0 0000    0116788888874 


Q ss_pred             --cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCcCCc-c----cccCCCCCccEEEecCcCcCCCC
Q 017640          207 --RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQSVPH-M----VVDVQGLDADFLVASSHKMCGPT  275 (368)
Q Consensus       207 --~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~~~~-~----~~~~~~~~~d~~~~s~~K~~g~~  275 (368)
                        +++.+|+++......|.+.|    +++|.++|++||+++|+||+|. |. .    ..+.....+|+++  ++|.+|..
T Consensus       198 ~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~t-G~R~G~~ga~~~~gv~PDi~~--~gK~lggG  274 (433)
T PRK00615        198 LGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVT-GFRVAQGGAAAIYHVKPDITV--YGKILGGG  274 (433)
T ss_pred             cCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccc-cccccHhHHHHhcCCCCCeEE--EcccccCC
Confidence              35789999999999999887    6799999999999999999994 32 1    1112234688876  56976632


Q ss_pred             -cceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Q 017640          276 -GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAG--TPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKW  352 (368)
Q Consensus       276 -G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--t~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l  352 (368)
                       .+|++++++++++.+.+..                    ..+..+  ..+....++..++++.+++.   .+.++++++
T Consensus       275 ~p~~av~~~~~i~~~~~~~~--------------------~~~~~~T~~g~p~~~aa~la~L~~i~~~---~~~~~~~~~  331 (433)
T PRK00615        275 LPAAAVVAHKSIMDHLAPEG--------------------TIFQAGTLSGNPLAMAAGKASINLCREQ---GFYTQLSTL  331 (433)
T ss_pred             cceeeeeecHHHHhhhcCCC--------------------CcccCCCCcccHHHHHHHHHHHHHHhcc---cHHHHHHHH
Confidence             2789999999887765310                    011112  35677788888888888763   346777777


Q ss_pred             HHHHHHHHHh
Q 017640          353 IICSIIVIQE  362 (368)
Q Consensus       353 ~~~l~~~l~~  362 (368)
                      .+++.+.|++
T Consensus       332 g~~l~~~l~~  341 (433)
T PRK00615        332 EQNFLSPIEE  341 (433)
T ss_pred             HHHHHHHHHH
Confidence            7777666654

>PRK07678 aminotransferase; Validated

Probab=99.57  E-value=7.3e-13  Score=127.86  Aligned_cols=268  Identities=9%  Similarity=0.026  Sum_probs=169.3

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++--|+|..      ..|+.+|.+.+++.+.+......+.   ..    ..+...++.+.|+++++..  +.++|+++++
T Consensus        45 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~---~~----~~~~~~~lae~l~~~~~~~--~~v~f~~sGs  115 (451)
T PRK07678         45 QGNRYLDGMSGLWCVNVGYGRKELAEAAYEQLKTLSYFPL---TQ----SHEPAIKLAEKLNEWLGGE--YVIFFSNSGS  115 (451)
T ss_pred             CCCEEEEccccHHhhcCCCCCHHHHHHHHHHHHhcCcccc---cc----CCHHHHHHHHHHHHhCCCC--CEEEEeCCcH
Confidence            445677763      3567899999999998886422211   01    1233446888888887653  3899999999


Q ss_pred             HHHHHHHHHccCCC---CC-CCCEEEEcCCCCcccHHHHHHHHHHc------C---CEEEEEeCCCCCCC---------C
Q 017640          140 EAINLVAYSWGLSN---LK-SGDEVILTVAEHHSAIVPWQLVAQKT------G---ANLKFLNLNDDESP---------D  197 (368)
Q Consensus       140 ~a~~~~~~~~~~~~---~~-~gd~vl~~~~~~~s~~~~~~~~~~~~------g---~~v~~v~~~~~~~~---------d  197 (368)
                      +|++.+++..+...   -+ .+.+|+.....||+............      +   ..+..++.......         |
T Consensus       116 eA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (451)
T PRK07678        116 EANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYD  195 (451)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccccccCChHHHH
Confidence            99999998753211   01 23578888999998654333221100      0   11222332211110         1


Q ss_pred             ---HHHHHHhcc----cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCccc----ccCCCCCc
Q 017640          198 ---LDKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLDA  261 (368)
Q Consensus       198 ---~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~~----~~~~~~~~  261 (368)
                         ++.+++.+.    +++.+|+++.++...|.+.|    ++++.++|++||+++|+||++. +|..-    .+.....+
T Consensus       196 ~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv~P  275 (451)
T PRK07678        196 LECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGVKP  275 (451)
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCCCC
Confidence               223555563    46799999999888888877    8999999999999999999984 55431    22223469


Q ss_pred             cEEEecCcCcCCCC--cceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 017640          262 DFLVASSHKMCGPT--GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST  339 (368)
Q Consensus       262 d~~~~s~~K~~g~~--G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~  339 (368)
                      |+++.+  |.+|..  .+|.+++++++.+.+.+....+..               ......+.|..+.++..++++.+++
T Consensus       276 Divt~g--K~lggG~~Pi~av~~~~~i~~~~~~~~~~~~~---------------~h~~T~~gnp~~~aaa~a~l~~l~~  338 (451)
T PRK07678        276 DIITMA--KGITSAYLPLSATAVKKEIYEAFKGKGEYEHF---------------RHVNTFGGNPAACALALKNLEIMEN  338 (451)
T ss_pred             CEEEee--cccccCCcceeEEEEcHHHHHHHhccCccccc---------------ccCCCCCcCHHHHHHHHHHHHHHHh
Confidence            999775  966543  389999999987766532100000               0011225667777788888888876


Q ss_pred             hCHHHHHHHHHHHHHHHHHHHHh
Q 017640          340 IGMQKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       340 ~g~~~i~~~~~~l~~~l~~~l~~  362 (368)
                      .   .+.+++.++.+++.+.|.+
T Consensus       339 ~---~~~~~~~~~g~~l~~~l~~  358 (451)
T PRK07678        339 E---NLIERSAQLGELLLEQLKE  358 (451)
T ss_pred             C---CHHHHHHHHHHHHHHHHHH
Confidence            4   3566777777777776654

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.57  E-value=1.4e-12  Score=125.67  Aligned_cols=263  Identities=12%  Similarity=0.117  Sum_probs=163.4

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC-CCCcE-EEeCC
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-DSGEI-VFTKN  137 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~~v-~~t~g  137 (368)
                      ++.-|+|..      ..|+.+|.+.+++.+++...... +. .    ....+...++.+.|++++... ....+ +++++
T Consensus        37 dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~-~~-~----~~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~s  110 (442)
T TIGR00709        37 EGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQSGLPL-HT-L----DLTTPLKDAFIEALLNIIPKRKMDYKLQFPGPS  110 (442)
T ss_pred             CCCEEEEccccHhhhcCCCCCHHHHHHHHHHHHhccCc-cc-c----ccCcHHHHHHHHHHHHhCCCcCCCccEEEeCCC
Confidence            344577764      35688999999999988763211 10 0    011344456778888887532 11244 55689


Q ss_pred             HHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHH----cC-----CEEEEEeCCCCCCC--------CH--
Q 017640          138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK----TG-----ANLKFLNLNDDESP--------DL--  198 (368)
Q Consensus       138 ~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~----~g-----~~v~~v~~~~~~~~--------d~--  198 (368)
                      +++|++.+++..+.  ...+.+|+.....||+.......+...    .+     ..+..++.......        +.  
T Consensus       111 GsEA~e~AlklAr~--~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (442)
T TIGR00709       111 GADAVEAAIKLAKT--YTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNA  188 (442)
T ss_pred             HHHHHHHHHHHHHH--hcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHH
Confidence            99999999997532  344567999999999876554443210    00     11333333211111        11  


Q ss_pred             --HHHHHhcc------cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCc
Q 017640          199 --DKLKEMLS------RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDA  261 (368)
Q Consensus       199 --~~l~~~l~------~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~  261 (368)
                        +.+++.+.      .++.+|+++.+++..|.+.|    +++|.++|++||+++|+||++. +|..    ..+.....+
T Consensus       189 ~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~P  268 (442)
T TIGR00709       189 SIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEP  268 (442)
T ss_pred             HHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCCCC
Confidence              12333332      35788889999888888765    8999999999999999999987 4432    111223468


Q ss_pred             cEEEecCcCcCCC-CcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 017640          262 DFLVASSHKMCGP-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI  340 (368)
Q Consensus       262 d~~~~s~~K~~g~-~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~  340 (368)
                      |+++.  +|.+|. ..+|+++++++ ++.+.+...+                     ...+.|..+.+++.++++.+++.
T Consensus       269 Div~~--gK~l~~G~Pigav~~~~~-~~~~~~~~~~---------------------~T~~gnpla~aaa~a~L~~i~~~  324 (442)
T TIGR00709       269 DFVVM--SKAVGGGLPLAVLLIAPE-FDAWQPAGHT---------------------GTFRGNQLAMVTGTEALNYWKDD  324 (442)
T ss_pred             cEEEE--cccccCCcccEEEEEchH-HhccCCCcCC---------------------CCCCcCHHHHHHHHHHHHHHHhc
Confidence            99985  696654 12899999887 4443321111                     11256777778888888887764


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHhh
Q 017640          341 GMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       341 g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                         .+.++.+++.+++.+.|+++
T Consensus       325 ---~l~~~~~~~g~~l~~~L~~l  344 (442)
T TIGR00709       325 ---NLAQNAQERGERITSFLDDM  344 (442)
T ss_pred             ---CHHHHHHHHHHHHHHHHHHH
Confidence               34556667777777666653

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK05965 hypothetical protein; Provisional

Probab=99.57  E-value=8e-13  Score=127.81  Aligned_cols=273  Identities=10%  Similarity=-0.003  Sum_probs=170.1

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..+      .|+..|.+.+++.+++........  ..  + ...+...++.+.|++.+..+. +.|+|+++++
T Consensus        44 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~--~~--~-~~~~~~~~lae~L~~~~p~~~-~~v~f~~sGS  117 (459)
T PRK05965         44 SGHQLLDAFAGLWCVNVGYGQESIVEAAAEQMRELPYATG--YF--H-FGSEPAIRLAAKLAERAPGSL-NHVYFTLGGS  117 (459)
T ss_pred             CCCEEEECcccHHhccCCCCCHHHHHHHHHHHHhcCCccc--cc--c-cCCHHHHHHHHHHHhhCCCCc-CEEEEeCChh
Confidence            4556888743      457799999999999886421110  00  0 012333467888888775333 3899999999


Q ss_pred             HHHHHHHHHccCCCC----CCCCEEEEcCCCCcccHHHHHHHHH------HcCC---EEEEEeCCCC----CCCC-----
Q 017640          140 EAINLVAYSWGLSNL----KSGDEVILTVAEHHSAIVPWQLVAQ------KTGA---NLKFLNLNDD----ESPD-----  197 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~----~~gd~vl~~~~~~~s~~~~~~~~~~------~~g~---~v~~v~~~~~----~~~d-----  197 (368)
                      +|++.+++..+....    ..+.+|+....+||+.......+..      ..+.   .+..++....    ..-|     
T Consensus       118 EAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (459)
T PRK05965        118 DAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAII  197 (459)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHHHH
Confidence            999999987532110    2245789899999986532222211      0110   1223332210    0012     


Q ss_pred             ---HHHHHHhcc----cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCc
Q 017640          198 ---LDKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDA  261 (368)
Q Consensus       198 ---~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~  261 (368)
                         ++.+++.+.    +++.+|+++..+...|.+.|    +++|.++|++||+++|+||++. +|..    ..+.....+
T Consensus       198 ~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~P  277 (459)
T PRK05965        198 AASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEGVVP  277 (459)
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhhhHhhcCCCC
Confidence               256777774    46789999999988898876    8999999999999999999977 4432    112223469


Q ss_pred             cEEEecCcCcCCCC--cceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 017640          262 DFLVASSHKMCGPT--GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST  339 (368)
Q Consensus       262 d~~~~s~~K~~g~~--G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~  339 (368)
                      |+++.+  |.+|..  .+|.+++++++.+.+.+.....+..              ......+.+..+.++..+.++.+++
T Consensus       278 Div~~g--Kgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~--------------~h~~T~~gnpl~~Aaa~a~L~~l~~  341 (459)
T PRK05965        278 DLMTVA--KGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPV--------------GHGYTYSAHPVSAAVGLEVLRLYHE  341 (459)
T ss_pred             CeEEec--hhhccCCcceeEEEEcHHHHHHHhccccccccc--------------cccCCCCCCHHHHHHHHHHHHHHHh
Confidence            999987  965432  4899999999876554211000000              0001124566677777788888876


Q ss_pred             hCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          340 IGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       340 ~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      .   .+.+++.++.+++.+.|+++
T Consensus       342 ~---~l~~~~~~~g~~l~~~l~~l  362 (459)
T PRK05965        342 G---GLLANGQKAGPRFAAGLDAL  362 (459)
T ss_pred             c---cHHHHHHHHHHHHHHHHHhh
Confidence            4   45566777777777777654

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=99.56  E-value=5.1e-13  Score=124.40  Aligned_cols=259  Identities=15%  Similarity=0.163  Sum_probs=166.6

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..      ..|..+|.+.+++.+.+.........+.      ..+...++.+.|.+.++... +.+.|++|++
T Consensus        14 dG~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~~~~~~~~~~------~~~~~~~la~~L~~~~p~~~-~~v~f~~sGs   86 (339)
T PF00202_consen   14 DGREYLDFMSGYGSVNLGHNHPEIAEAIAEQANKLNYVSFSGF------THPEAAELAEKLAELFPGGL-DRVFFANSGS   86 (339)
T ss_dssp             TSEEEEESSHHHHTTTT-BT-HHHHHHHHHHHHHCSSCSTTTS------EEHHHHHHHHHHHHHSSTTE-EEEEEESSHH
T ss_pred             CCCEEEECCCCccceecCCCccccchhHHHHhhhcccccccce------eccchhhhhhhhhhcccccc-ceeeeccCch
Confidence            455688875      3567889999999998877532211111      13344578888888885433 3899999999


Q ss_pred             HHHHHHHHHccC----CCCCCCCEEEEcCCCCcccHHHHHHHH------HHcC---CEEEEEeCCCCCCCCHHH------
Q 017640          140 EAINLVAYSWGL----SNLKSGDEVILTVAEHHSAIVPWQLVA------QKTG---ANLKFLNLNDDESPDLDK------  200 (368)
Q Consensus       140 ~a~~~~~~~~~~----~~~~~gd~vl~~~~~~~s~~~~~~~~~------~~~g---~~v~~v~~~~~~~~d~~~------  200 (368)
                      +|++.+++....    ........|+....+||+.......+.      +..+   ..+..+|.+     ++..      
T Consensus        87 eAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~-----~~~~~~~~~~  161 (339)
T PF00202_consen   87 EAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFP-----DPAADEEEQA  161 (339)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETT-----CHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCC-----ccchhhhHHH
Confidence            999999997620    012345689999999997554322221      0011   234666765     3333      


Q ss_pred             ----HHH----hcccCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccE
Q 017640          201 ----LKE----MLSRKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADF  263 (368)
Q Consensus       201 ----l~~----~l~~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~  263 (368)
                          +++    .-.+++.+|+++..+...|...+    +++|.++|++||+++|+||++. +|..    ..+.....+|+
T Consensus       162 ~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~PDi  241 (339)
T PF00202_consen  162 CLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVDPDI  241 (339)
T ss_dssp             HHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSSSE
T ss_pred             HHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCCccceecccccCcc
Confidence                222    22346789999999988887775    8999999999999999999987 3322    11223456899


Q ss_pred             EEecCcCcCC-CCcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCH
Q 017640          264 LVASSHKMCG-PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGM  342 (368)
Q Consensus       264 ~~~s~~K~~g-~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~  342 (368)
                      ++.+  |.++ +..+|.+++++++.+.+.+...+.+.                     ..+..+.++..+.++.+++.+ 
T Consensus       242 v~~g--K~l~gG~p~sav~~~~~i~~~~~~~~~~~T~---------------------~g~p~~~aaa~~~l~~~~~~~-  297 (339)
T PF00202_consen  242 VTFG--KGLGGGLPISAVLGSEEIMEAFQPGSHGSTF---------------------GGNPLSCAAALATLEILEEED-  297 (339)
T ss_dssp             EEEE--GGGGTTSSEEEEEEEHHHHTTSCTTSSTCTT---------------------TT-HHHHHHHHHHHHHHHHTT-
T ss_pred             cccc--cchhhhhhcccccccchhhcccccccccccc---------------------ccchHhhhhhhhHHHhhccHH-
Confidence            9997  9543 34489999999988776544322211                     355667777778888888743 


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 017640          343 QKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       343 ~~i~~~~~~l~~~l~~~l~~  362 (368)
                        +.+++.++.+++.+.|++
T Consensus       298 --~~~~~~~~g~~l~~~L~~  315 (339)
T PF00202_consen  298 --LLERVRELGERLREGLRE  315 (339)
T ss_dssp             --HHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHH
Confidence              445555555555555543

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.56  E-value=3.5e-12  Score=122.78  Aligned_cols=262  Identities=13%  Similarity=0.121  Sum_probs=164.9

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..      ..|+..+.+.+++.+.+........ ..     ...+...++.+.|++.+..+..+.|.|+++++
T Consensus        52 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~-~~-----~~~~~~~~lAe~L~~~~p~~~~~~v~f~~SGs  125 (441)
T PRK05769         52 DGNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLHYSL-TD-----FYYEPAVELAERLVEIAPGGFEKKVFFTNSGT  125 (441)
T ss_pred             CCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccCccC-cc-----cCCHHHHHHHHHHHHhCCCCCCCEEEECCchH
Confidence            344577763      2557789999999999886421111 00     01233456788888877532224899999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHH-c---------CCEEEEEeCCCCCC-------------C
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK-T---------GANLKFLNLNDDES-------------P  196 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~-~---------g~~v~~v~~~~~~~-------------~  196 (368)
                      +|++.+++..+.  ...+++|+....+||+.......+... .         ...+..++......             -
T Consensus       126 EA~e~AlklAr~--~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (441)
T PRK05769        126 ESNEAAIKIARY--HTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNA  203 (441)
T ss_pred             HHHHHHHHHHHH--HhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHH
Confidence            999999987532  344567888899999876544433110 0         01133333321100             0


Q ss_pred             CHHHHHH-hc-----ccCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCccc----ccCCCCCc
Q 017640          197 DLDKLKE-ML-----SRKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLDA  261 (368)
Q Consensus       197 d~~~l~~-~l-----~~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~~----~~~~~~~~  261 (368)
                      +++.+++ .+     ..++.+|+++......|.+.|    +++|.++|++||+++|+||++. +|...    .......+
T Consensus       204 ~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~p  283 (441)
T PRK05769        204 VLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEP  283 (441)
T ss_pred             HHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCCCC
Confidence            1234555 22     235789999999999999998    9999999999999999999987 33221    11112357


Q ss_pred             cEEEecCcCcCC-CCcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 017640          262 DFLVASSHKMCG-PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI  340 (368)
Q Consensus       262 d~~~~s~~K~~g-~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~  340 (368)
                      |+++.  +|.+| +..+|++++++++.+... ...+                  ..|   ..+..+.+++.++++.+++ 
T Consensus       284 Divt~--~K~l~~G~p~gav~~~~~i~~~~~-~~~~------------------~T~---~g~p~~~aaa~a~L~~l~~-  338 (441)
T PRK05769        284 DIITL--AKAIAGGLPLGAVIGRAELMFLPP-GSHA------------------NTF---GGNPVAAAAALATLEELEE-  338 (441)
T ss_pred             CEEEE--cccccCCcccEEEEEehhhhhcCC-CCCC------------------CCC---CcCHHHHHHHHHHHHHHHH-
Confidence            88864  59665 223788999988764321 1111                  111   2355667777777887765 


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHhh
Q 017640          341 GMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       341 g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                         .+.++..++.+++.+.|++.
T Consensus       339 ---~~~~~~~~~g~~l~~~L~~l  358 (441)
T PRK05769        339 ---GLLENAQKLGEYLRKELKEL  358 (441)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHH
Confidence               45667777777777777553

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.56  E-value=1.1e-12  Score=126.43  Aligned_cols=272  Identities=10%  Similarity=0.047  Sum_probs=168.8

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..      ..|+.+|.+.+++.+.+..+...+...  .    ..+...++.++|++++.... +.|.|+++++
T Consensus        47 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~--~----~~~~~~~la~~L~~~~p~~~-~~v~f~~sGs  119 (445)
T PRK09221         47 DGRKILDGTAGLWCCNAGHGRPEIVEAVARQAATLDYAPAFQ--M----GHPLAFELAERLAELAPGGL-DHVFFTNSGS  119 (445)
T ss_pred             CCCEEEEccccHhhccCCCCCHHHHHHHHHHHHhccCccccc--c----CCHHHHHHHHHHHHhCCCCC-CEEEEeCCcH
Confidence            344677763      346789999999999988642221100  0    12334467888888875332 3899999999


Q ss_pred             HHHHHHHHHccCCC---C-CCCCEEEEcCCCCcccHHHHHHHHH------HcC---CEEEEEeCCC-C----CC------
Q 017640          140 EAINLVAYSWGLSN---L-KSGDEVILTVAEHHSAIVPWQLVAQ------KTG---ANLKFLNLND-D----ES------  195 (368)
Q Consensus       140 ~a~~~~~~~~~~~~---~-~~gd~vl~~~~~~~s~~~~~~~~~~------~~g---~~v~~v~~~~-~----~~------  195 (368)
                      +|++.+++......   - ..+.+|+.....||+..........      .++   ..+..++... .    +.      
T Consensus       120 eAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (445)
T PRK09221        120 ESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEH  199 (445)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCChHHH
Confidence            99999998653110   0 1245788889999886433221110      001   1122333221 0    00      


Q ss_pred             --CCHHHHHHhcc----cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCC
Q 017640          196 --PDLDKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLD  260 (368)
Q Consensus       196 --~d~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~  260 (368)
                        ..++++++.+.    +++.+|+++......|.+.|    +++|.++|++||+++|+||+++ +|..    ..+.....
T Consensus       200 ~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~gv~  279 (445)
T PRK09221        200 GAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFGVT  279 (445)
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHHhcCCC
Confidence              01356666664    45789999999999999998    9999999999999999999984 5432    11222335


Q ss_pred             ccEEEecCcCcCCCC--cceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 017640          261 ADFLVASSHKMCGPT--GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS  338 (368)
Q Consensus       261 ~d~~~~s~~K~~g~~--G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~  338 (368)
                      +|+++.|  |.++..  .+|.+++++++.+.+.........          +   ...+ ..+.+..+.+++.++++.++
T Consensus       280 PDi~~~g--K~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~----------~---~~~~-T~~~~pl~~aaa~a~L~~i~  343 (445)
T PRK09221        280 PDIITFA--KGLTNGAIPMGAVIASDEIYDAFMQGPEYAIE----------F---FHGY-TYSAHPVACAAGLATLDIYR  343 (445)
T ss_pred             CCEEEec--cccccCcccceeeEEcHHHHHhhccCcccccc----------c---cccc-CCCcCHHHHHHHHHHHHHHH
Confidence            7887665  865432  278888898887665421000000          0   0001 11345666677778888887


Q ss_pred             HhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          339 TIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       339 ~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +.   .+.++..++.+++.+.|+++
T Consensus       344 ~~---~l~~~~~~~g~~l~~~l~~l  365 (445)
T PRK09221        344 EE---DLFERAAELAPYFEDAVHSL  365 (445)
T ss_pred             hc---cHHHHHHHHHHHHHHHHHhh
Confidence            64   35688888888888888765

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=99.55  E-value=2.2e-12  Score=124.56  Aligned_cols=262  Identities=12%  Similarity=0.138  Sum_probs=166.5

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..      ..|+.+|.+.+++.+.+....... .+. .    ..+...++.+.|++.+.... +.|.|+++++
T Consensus        51 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~~~~~~-~~~-~----~~~~~~~lae~L~~~~p~~~-~~v~f~~SGs  123 (457)
T PRK05639         51 DGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVALIQHSM-IGY-T----HSERAIRVAEKLAEISPIEN-PKVLFGLSGS  123 (457)
T ss_pred             CCCEEEECCcCHHhhccCCCCHHHHHHHHHHHHhccccc-cCc-c----CCHHHHHHHHHHHhhCCCCc-CEEEEeCchH
Confidence            445677773      356789999999999987642111 110 1    12333467888888775432 3899999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHH-----cC-----CEEEEEeCCCCCC--------CCH---
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK-----TG-----ANLKFLNLNDDES--------PDL---  198 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~-----~g-----~~v~~v~~~~~~~--------~d~---  198 (368)
                      +|++.+++..+.  ...+..|+.....||+.......+...     .+     ..+..+|......        -|.   
T Consensus       124 EA~e~AlklAr~--~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  201 (457)
T PRK05639        124 DAVDMAIKVSKF--STRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDEL  201 (457)
T ss_pred             HHHHHHHHHHHH--hcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHH
Confidence            999999997632  344567888899999866443332210     01     1234444431110        022   


Q ss_pred             -----HHHHHhc------ccCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCC
Q 017640          199 -----DKLKEML------SRKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQG  258 (368)
Q Consensus       199 -----~~l~~~l------~~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~  258 (368)
                           +.+++.+      ..++.+|+++..+...|.+.|    +++|.++|++||+++|+||++. +|..    ..+...
T Consensus       202 ~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~g  281 (457)
T PRK05639        202 INRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFE  281 (457)
T ss_pred             HHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcC
Confidence                 2355543      246799999999998898776    8999999999999999999987 3221    112223


Q ss_pred             CCccEEEecCcCcCC-CCcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 017640          259 LDADFLVASSHKMCG-PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL  337 (368)
Q Consensus       259 ~~~d~~~~s~~K~~g-~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~  337 (368)
                      ..+|+++  ++|.+| +.++|.+++++++.+. .....+                     .....+....++..++++.+
T Consensus       282 v~PDiv~--~gK~l~gG~pi~av~~~~~i~~~-~~~~~~---------------------~T~~g~p~~~aaa~a~l~~l  337 (457)
T PRK05639        282 VKPDLII--FGKGVASGMGLSGVIGRKELMDL-TSGSAL---------------------LTPAANPVISAAAEATLEII  337 (457)
T ss_pred             CCCCEEE--echhhcCCCcceeEEehHHHHhh-cCCCcc---------------------cCCCcCHHHHHHHHHHHHHH
Confidence            4699998  469654 4448999999998762 111000                     01134555667777778887


Q ss_pred             HHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          338 STIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       338 ~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      ++.   .+.++..++.+++.+.|+++
T Consensus       338 ~~~---~l~~~~~~~g~~l~~~L~~l  360 (457)
T PRK05639        338 EEE---NLLKNALKVGEFIKKRLLEM  360 (457)
T ss_pred             HHc---cHHHHHHHHHHHHHHHHHHH
Confidence            764   34566666777777776653

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=99.55  E-value=1.5e-13  Score=131.08  Aligned_cols=223  Identities=20%  Similarity=0.178  Sum_probs=164.2

Q ss_pred             HHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC
Q 017640          112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN  191 (368)
Q Consensus       112 ~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~  191 (368)
                      .+.+.++..|+.+|++.  ..++++|+|.|+..++.++    +++||.|++...+|.|....+.    ..|+.++++...
T Consensus        71 ~i~eAqe~aA~~fgAd~--tyFvvNGTS~ank~vi~a~----~~~GD~VLvdRN~HKSi~~gli----laGa~Pvyl~p~  140 (557)
T COG1982          71 PIKEAQELAARVFGADH--TYFVVNGTSTANKAVINAV----LTPGDKVLVDRNCHKSIHHGLI----LAGATPVYLEPS  140 (557)
T ss_pred             cHHHHHHHHHHHhCCCc--eEEEECCccHHHHHHHHhh----cCCCCEEEecCCccHHHHHHHH----HcCCceEEecCC
Confidence            46689999999999984  6788899999999999998    9999999999999999876633    349999998876


Q ss_pred             CC------CCCCHHHHHHhccc--Cc-eEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcc--c--ccC-C
Q 017640          192 DD------ESPDLDKLKEMLSR--KT-KLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM--V--VDV-Q  257 (368)
Q Consensus       192 ~~------~~~d~~~l~~~l~~--~~-~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~--~--~~~-~  257 (368)
                      .|      +.|+.+.+++++..  .. +++++++++ -.|.++++++|.+.+++.++++.+|++|.....  +  .+. .
T Consensus       141 ~np~~gi~ggI~~~~~~~~l~~~~~~~k~~vitnpT-YdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~  219 (557)
T COG1982         141 RNPLYGIIGGIPLETFKEALLAHPDAEKLAVITNPT-YDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESAL  219 (557)
T ss_pred             CCccccccCCCCHHHHHHHHHhChhhheeEEEecCc-cceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchhh
Confidence            44      57799999888754  33 778888874 479999999999999999999999999984322  1  121 2


Q ss_pred             CCCccEEEecCcCcCC-CCcceEEEEccc-ccc--cCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 017640          258 GLDADFLVASSHKMCG-PTGIGFLFGKSD-LLS--AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAA  333 (368)
Q Consensus       258 ~~~~d~~~~s~~K~~g-~~G~G~l~~~~~-li~--~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~a  333 (368)
                      +.+.|+++-|.||.++ ..-..++.+++. .++  ++...+                    ..+.+++|+++.++++..|
T Consensus       220 ~~~~~~~tqS~HK~l~alSQaS~iHv~~~~~~~~~r~nea~--------------------~~h~STSPsY~l~ASlD~A  279 (557)
T COG1982         220 NGGADFVTQSTHKLLAALSQASMIHVKDGRAVNHERFNEAL--------------------MMHQSTSPSYPLMASLDVA  279 (557)
T ss_pred             hcCceEEEechhhhhhhhhhhHHHhhCCCccCCHHHHHHHH--------------------HHHccCCchHHHHHHHHHH
Confidence            2478999999999776 444788888764 111  111110                    2334668888888888886


Q ss_pred             HHHHHHhCHHHH---HHHHHHHHHHHHHHHHhhcC
Q 017640          334 IDYLSTIGMQKI---HAYEVKWIICSIIVIQERHN  365 (368)
Q Consensus       334 l~~~~~~g~~~i---~~~~~~l~~~l~~~l~~~~g  365 (368)
                      -.+....|...+   .+..-+.++.+.+.+.++.+
T Consensus       280 r~~~~~~G~~l~~~~~~~~i~~r~~~~~~~~~~~~  314 (557)
T COG1982         280 RMQEGNAGRELWQEVIDEAIDFRKALRRLINEIGF  314 (557)
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            666665564443   34455556666666655544

>PRK12403 putative aminotransferase; Provisional

Probab=99.55  E-value=2.1e-12  Score=124.96  Aligned_cols=266  Identities=13%  Similarity=0.002  Sum_probs=162.0

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..      ..|+..|.+.+++.++++.+....   ...  ....+...++.++|+++++... +.++|+++++
T Consensus        52 dG~~ylD~~~g~~~~~lGh~hp~v~~A~~~q~~~~~~~~---~~~--~~~~~~~~~lae~L~~~~p~~~-~~v~f~~SGs  125 (460)
T PRK12403         52 DGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYYN---MFF--HTTHPAVIELSELLFSLLPGHY-SHAIYTNSGS  125 (460)
T ss_pred             CCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhCCCee---ccc--ccCCHHHHHHHHHHHHhCCCCc-CEEEEeCCcH
Confidence            444677742      356788999999999998743211   000  0113445578888888886432 3899999999


Q ss_pred             HHHHHHHHHccCCC---CCCCC-EEEEcCCCCcccHHHHHHHHHHcCCE-----------EEEEeCCCC----CCC----
Q 017640          140 EAINLVAYSWGLSN---LKSGD-EVILTVAEHHSAIVPWQLVAQKTGAN-----------LKFLNLNDD----ESP----  196 (368)
Q Consensus       140 ~a~~~~~~~~~~~~---~~~gd-~vl~~~~~~~s~~~~~~~~~~~~g~~-----------v~~v~~~~~----~~~----  196 (368)
                      +|+..+++..+...   -++++ .|+....+||+.......+   .+.+           +..+|...-    +.+    
T Consensus       126 eA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~---s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  202 (460)
T PRK12403        126 EANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATAL---GGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAE  202 (460)
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhc---CCCccccccCCCCCCCEEeCCCcccccccCCChHH
Confidence            99999999763210   12333 4555566777653322221   1211           222321110    000    


Q ss_pred             ----CHHHHHHhcc----cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCC
Q 017640          197 ----DLDKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGL  259 (368)
Q Consensus       197 ----d~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~  259 (368)
                          +++.+++.+.    +++.+|+++.+....|.+.|    +++|.++|++||+++|+||+++ +|..    ..+....
T Consensus       203 ~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv  282 (460)
T PRK12403        203 FGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGF  282 (460)
T ss_pred             HHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhhhhhcCC
Confidence                1345655552    35689999999999999888    9999999999999999999985 4332    1122234


Q ss_pred             CccEEEecCcCcCCCC--cceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 017640          260 DADFLVASSHKMCGPT--GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL  337 (368)
Q Consensus       260 ~~d~~~~s~~K~~g~~--G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~  337 (368)
                      .+|+++  ++|.+|..  .+|.+++++++.+.+.+.- +...                .......|..+.++..++|+.+
T Consensus       283 ~PDiv~--~gK~lggG~~Piga~v~~~~i~~~~~~~~-~~~~----------------~~~T~~gnPl~~Aaala~L~~i  343 (460)
T PRK12403        283 EPDTLS--IAKGLTSGYVPMGGLVLSKRIAEALVEQG-GVFA----------------HGLTYSGHPVAAAVAIANLKAL  343 (460)
T ss_pred             CCCeEE--EcccccccccceEEEEECHHHHHHHhcCC-Cccc----------------cCCCCCCCHHHHHHHHHHHHHH
Confidence            589997  56966532  3777778888776554210 0000                0001136777888888889988


Q ss_pred             HHhCHHHHHHHHH-HHHHHHHHHHHh
Q 017640          338 STIGMQKIHAYEV-KWIICSIIVIQE  362 (368)
Q Consensus       338 ~~~g~~~i~~~~~-~l~~~l~~~l~~  362 (368)
                      ++.+   +.+++. ++.+++.+.|++
T Consensus       344 ~~~~---l~~~~~~~~g~~l~~~L~~  366 (460)
T PRK12403        344 RDEG---VVTRVKDDTGPYLQRCLRE  366 (460)
T ss_pred             Hhcc---HHHHHHHHHHHHHHHHHHH
Confidence            8754   345553 556666665543

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=99.55  E-value=4.8e-13  Score=122.28  Aligned_cols=256  Identities=18%  Similarity=0.201  Sum_probs=163.9

Q ss_pred             CeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHH
Q 017640           67 KLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVA  146 (368)
Q Consensus        67 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~  146 (368)
                      +.+-.-+.+-+..+++++++....+..+- +..  .+.......+....+.+.+....++   +.++++++.+.|+..++
T Consensus        27 G~v~~t~lG~s~~~~e~iea~~~~~~~~v-~Le--~~l~~g~~~~R~~~~~~~~~~~~~a---ea~~ivnnn~aAVll~~  100 (395)
T COG1921          27 GTVLMTNLGRSLYSPEAIEAMKEAMRAPV-ELE--TDLKTGKRGARLTELAELLCGLTGA---EAAAIVNNNAAAVLLTL  100 (395)
T ss_pred             hhheeccCCCccCCHHHHHHHHHHhcccc-eee--eecccchhhHHHHHHHHHHhcccch---hheeeECCcHHHHHHHH
Confidence            33344445556788899998887776431 111  1111111222333444444444444   37788888888999999


Q ss_pred             HHccCCCCCCCCEEEEcC-----CCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEccccccc
Q 017640          147 YSWGLSNLKSGDEVILTV-----AEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNML  221 (368)
Q Consensus       147 ~~~~~~~~~~gd~vl~~~-----~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~t  221 (368)
                      .++    .. +.+++++-     +.++.    +...++..|+++++|...  +.-...+++.+|.+++++++-.+.+|. 
T Consensus       101 ~al----~~-~~EvVis~g~lV~gg~~~----v~d~~~~aG~~l~EvG~t--n~t~~~d~~~AIne~ta~llkV~s~~~-  168 (395)
T COG1921         101 NAL----AE-GKEVVVSRGELVEGGAFR----VPDIIRLAGAKLVEVGTT--NRTHLKDYELAINENTALLLKVHSSNY-  168 (395)
T ss_pred             hhh----cc-CCeEEEEccccccCCCCC----hhHHHHHcCCEEEEeccc--CcCCHHHHHHHhccCCeeEEEEeeccc-
Confidence            877    44 44444432     33444    556667779999988743  334789999999999998887776654 


Q ss_pred             cc--ccCHHHHHHHHHhcCCEEEEecCCcCCcc-ccc---CCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCccc
Q 017640          222 AS--ILPIEEIVHWSHDVGAKVLVDACQSVPHM-VVD---VQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLG  295 (368)
Q Consensus       222 G~--~~~l~~i~~l~~~~g~~li~D~a~~~~~~-~~~---~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~  295 (368)
                      |.  ..+.++++++||+||+++++|.+.+...- ..+   .-..++|++++|..|++|++-.|+++++++++++++..-.
T Consensus       169 ~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~SgdKllgGPqaGii~GkKelI~~lq~~~l  248 (395)
T COG1921         169 GFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGADLVSFSGDKLLGGPQAGIIVGKKELIEKLQSHPL  248 (395)
T ss_pred             cccccccHHHHHHHHHHcCCCEEEecCCccccccccchhHHHhcCCCEEEEecchhcCCCccceEechHHHHHHHHhhhh
Confidence            33  34688999999999999999999875321 112   2245899999999998876668999999999988773322


Q ss_pred             CCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Q 017640          296 GGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQ  361 (368)
Q Consensus       296 g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~  361 (368)
                      +                  +..   .-+-..++++..+++.+........+.+...+.....+.|.
T Consensus       249 ~------------------Ral---rv~K~tla~l~~aLe~y~~~~~~~~~~~~~~~l~~~~~~l~  293 (395)
T COG1921         249 K------------------RAL---RVDKETLAALEAALELYLQPEILGERLRTLRLLTQPAEALL  293 (395)
T ss_pred             h------------------hhh---hcCcHhHHHHHHHHHHHcCchhhhhhhHHHHhhccHHHHHH
Confidence            1                  112   33445677888888877764322333333333333344443

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.54  E-value=1.7e-12  Score=125.19  Aligned_cols=271  Identities=11%  Similarity=0.089  Sum_probs=169.3

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..      ..|+.+|.+.+++.+++..+......+  .    ..+...++.+.|++.++..- +.++|+++++
T Consensus        52 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~--~----~~~~~~~lAe~L~~~~p~~~-~~v~f~~sGs  124 (453)
T PRK06943         52 DGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAMLAG--C----THEPAIELAERLAALTGGTL-GHAFFASDGA  124 (453)
T ss_pred             CCCEEEEcchHHHHhcCCCCCHHHHHHHHHHHHhcCCccccc--c----CCHHHHHHHHHHHHhCCCCC-CEEEEeCCCH
Confidence            445677764      357889999999999988642111100  0    12334467888888776432 3899999999


Q ss_pred             HHHHHHHHHccCC----CCCCCCEEEEcCCCCcccHHHHHHHHHH------cC---CEEEEEeCCCCC-----C------
Q 017640          140 EAINLVAYSWGLS----NLKSGDEVILTVAEHHSAIVPWQLVAQK------TG---ANLKFLNLNDDE-----S------  195 (368)
Q Consensus       140 ~a~~~~~~~~~~~----~~~~gd~vl~~~~~~~s~~~~~~~~~~~------~g---~~v~~v~~~~~~-----~------  195 (368)
                      +|++.+++.....    ....+.+|+....+||+.......+...      ++   ..+..++.....     .      
T Consensus       125 eAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  204 (453)
T PRK06943        125 SAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVA  204 (453)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHHH
Confidence            9999999875211    1123467999999999865332222110      00   012233322110     0      


Q ss_pred             -CCHHHHHHhcc---cCceEEEEcc-cccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCccc----ccCCCCCc
Q 017640          196 -PDLDKLKEMLS---RKTKLVVIHH-ISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLDA  261 (368)
Q Consensus       196 -~d~~~l~~~l~---~~~~~v~~~~-~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~~----~~~~~~~~  261 (368)
                       -+++++++.+.   +++.+|+++. ++...|.+.|    +++|.++|++||+++|+||++. +|..-    .+.....+
T Consensus       205 ~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv~P  284 (453)
T PRK06943        205 ARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGVWP  284 (453)
T ss_pred             HHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchhHHHhCCCCC
Confidence             13466777774   4678999998 4888888776    8999999999999999999975 54331    12223469


Q ss_pred             cEEEecCcCcCCCC--cceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 017640          262 DFLVASSHKMCGPT--GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST  339 (368)
Q Consensus       262 d~~~~s~~K~~g~~--G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~  339 (368)
                      |+++.+  |.+|..  .+|.+++++++.+.+.+....+..               ......+.|..+.++..+.++.+++
T Consensus       285 Divt~g--Kgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~---------------~~~~T~~gnpl~~aaa~a~L~~i~~  347 (453)
T PRK06943        285 DFLCLS--KGISGGYLPLSLVLSRDAIFAAFYDDDVTRGF---------------LHSHSYTGNPLACRAALATLDLFAE  347 (453)
T ss_pred             CeEeee--hhhccCcccceEEEEcHHHHHhhcccCccCCc---------------cCCCCCCCCHHHHHHHHHHHHHHHh
Confidence            999986  955422  389999999887655421100000               0001114577778888888888887


Q ss_pred             hCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          340 IGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       340 ~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      .+   +.++..++.+++.+.|+++
T Consensus       348 ~~---l~~~~~~~G~~l~~~L~~l  368 (453)
T PRK06943        348 DD---VLARNARKSARLRAALAPL  368 (453)
T ss_pred             cC---HHHHHHHHHHHHHHHHHHH
Confidence            43   4556666666666666543

>PRK07481 hypothetical protein; Provisional

Probab=99.54  E-value=1.9e-12  Score=125.00  Aligned_cols=274  Identities=9%  Similarity=-0.004  Sum_probs=166.7

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++--|+|..      ..|+..|.+.+++++.+.........    .+ ...+...++.+.|+++++.+..+.+.|+++++
T Consensus        40 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~----~~-~~~~~~~~lae~L~~~~~~~~~~~v~f~~sGs  114 (449)
T PRK07481         40 DGKKLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEYYSTF----DG-TTHPRAIELSYELIDMFAPEGMRRVFFSSGGS  114 (449)
T ss_pred             CCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhccceecc----cc-cCCHHHHHHHHHHHHhcCCCCCCEEEEcCchH
Confidence            445677763      35678999999999998864211100    00 01233446888888887422224899999999


Q ss_pred             HHHHHHHHHccCCC---C-CCCCEEEEcCCCCcccHHHHHHHHHH------cC---CEEEEEeCCCC----CC-CCHHH-
Q 017640          140 EAINLVAYSWGLSN---L-KSGDEVILTVAEHHSAIVPWQLVAQK------TG---ANLKFLNLNDD----ES-PDLDK-  200 (368)
Q Consensus       140 ~a~~~~~~~~~~~~---~-~~gd~vl~~~~~~~s~~~~~~~~~~~------~g---~~v~~v~~~~~----~~-~d~~~-  200 (368)
                      +|++.+++..+...   - ..+.+|+....+||+.......+...      .+   ..+..++.+..    +. -|.+. 
T Consensus       115 EAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~  194 (449)
T PRK07481        115 DSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEEL  194 (449)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccccCCCCHHHH
Confidence            99999998753210   0 12457899999999865432222110      00   01222222110    00 13333 


Q ss_pred             -------HHHhcc----cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCC
Q 017640          201 -------LKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLD  260 (368)
Q Consensus       201 -------l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~  260 (368)
                             +++.+.    +++.+|+++.++...|.+.|    +++|.++|++||+++|+||++. +|..    ..+.....
T Consensus       195 ~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~  274 (449)
T PRK07481        195 ARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGVK  274 (449)
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCCC
Confidence                   344442    46799999999998898876    8999999999999999999976 4432    11223346


Q ss_pred             ccEEEecCcCcCCCC--cceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 017640          261 ADFLVASSHKMCGPT--GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS  338 (368)
Q Consensus       261 ~d~~~~s~~K~~g~~--G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~  338 (368)
                      +|+++.+  |.+|..  .+|.+++++++.+.+.+.....+..              ........|..+.++..++++.++
T Consensus       275 PDiv~~g--Kgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~--------------~h~~T~~gnpl~~aaa~a~L~~l~  338 (449)
T PRK07481        275 PDIMCLA--KGITSGYVPLGATMVNARIADAFEANADFGGAI--------------MHGYTYSGHPVACAAALATLDIVV  338 (449)
T ss_pred             CCEEEEe--ecccCCCcCceEEEEcHHHHHHHhccCcccccc--------------ccCCCCCCCHHHHHHHHHHHHHHH
Confidence            9998886  965532  3889999998876654321000000              000011346666777778888777


Q ss_pred             HhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          339 TIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       339 ~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +   +.+.++.+++.+++.+.|+++
T Consensus       339 ~---~~l~~~~~~~g~~l~~~L~~l  360 (449)
T PRK07481        339 R---EDLPANAAKRGAYLLEGLQPL  360 (449)
T ss_pred             h---hhHHHHHHHHHHHHHHHHHHH
Confidence            6   345666777777777766654

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=99.53  E-value=1.2e-12  Score=125.17  Aligned_cols=270  Identities=9%  Similarity=0.003  Sum_probs=167.3

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..+      .|+.+|.+.+++.+++..........      ...+...++.+.|++.+.... +.+.|+++++
T Consensus        41 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~------~~~~~~~~la~~L~~~~p~~~-~~v~f~~SGs  113 (428)
T PRK07986         41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGG------ITHPPAIELCRKLVAMTPQPL-ECVFLADSGS  113 (428)
T ss_pred             CCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHhhcCCccccc------cCCHHHHHHHHHHHhhCCCCc-CEEEEeCCcH
Confidence            4556777643      46788999999999988643211100      012334567788888775432 3899999999


Q ss_pred             HHHHHHHHHccCCC---CCCCCEEEEcCCCCcccHHHHHHHHH-------HcC---CEEEEEeCCCCC------CCCHHH
Q 017640          140 EAINLVAYSWGLSN---LKSGDEVILTVAEHHSAIVPWQLVAQ-------KTG---ANLKFLNLNDDE------SPDLDK  200 (368)
Q Consensus       140 ~a~~~~~~~~~~~~---~~~gd~vl~~~~~~~s~~~~~~~~~~-------~~g---~~v~~v~~~~~~------~~d~~~  200 (368)
                      +|++.+++..+...   -.++.+|+....+||+.......+..       .++   ..+..++.....      .-|+++
T Consensus       114 EAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~  193 (428)
T PRK07986        114 VAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAP  193 (428)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHH
Confidence            99999998653210   02356899999999985433222211       000   012223321110      125667


Q ss_pred             HHHhcc---cCceEEEEccc-ccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEEec
Q 017640          201 LKEMLS---RKTKLVVIHHI-SNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVAS  267 (368)
Q Consensus       201 l~~~l~---~~~~~v~~~~~-~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s  267 (368)
                      +++.+.   +++.+|+++.. +...|.+.|    +++|.++|++||+++|+||+|. +|..    ..+.....+|+++  
T Consensus       194 l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~~gv~PDi~t--  271 (428)
T PRK07986        194 FARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGIAPDILC--  271 (428)
T ss_pred             HHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeeecccCCCCCEEE--
Confidence            777775   35678888885 666676554    8999999999999999999984 3222    1122334688886  


Q ss_pred             CcCcCCCC--cceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 017640          268 SHKMCGPT--GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI  345 (368)
Q Consensus       268 ~~K~~g~~--G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i  345 (368)
                      ++|.+|..  .+|.+++++++.+.+.+...+...                .....+.+..+.++..++++.+++.   .+
T Consensus       272 ~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~----------------~~~T~~g~p~~~aaa~a~L~~i~~~---~~  332 (428)
T PRK07986        272 LGKALTGGTMTLSATLTTREVAETISNGEAGCFM----------------HGPTFMGNPLACAVANASLSLLESG---DW  332 (428)
T ss_pred             echhhhCCcccCcchhchHHHHHHhhcCCCCccc----------------cCCCCCcCHHHHHHHHHHHHHHHhC---CH
Confidence            56965422  367788898887776532100000                0001145677777788888888764   34


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 017640          346 HAYEVKWIICSIIVIQER  363 (368)
Q Consensus       346 ~~~~~~l~~~l~~~l~~~  363 (368)
                      .+++.++.+++.+.|+++
T Consensus       333 ~~~~~~~g~~l~~~l~~l  350 (428)
T PRK07986        333 QQQVAAIEAQLREELAPL  350 (428)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            677777778877777654

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.53  E-value=2.2e-12  Score=124.84  Aligned_cols=272  Identities=9%  Similarity=0.029  Sum_probs=170.4

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..      ..|+.+|.+.+++.+.+.........+      ...+...++.+.|++.+.... +.|.|+++++
T Consensus        45 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~~------~~~~~~~~lae~L~~~~p~~~-~~v~f~~sGs  117 (466)
T PRK07030         45 EGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVILAG------FSHEPVIELSERLVKITPPGL-SRCFYADNGS  117 (466)
T ss_pred             CCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHHhcCCccccc------cCCHHHHHHHHHHHHhCCCCc-CEEEEeCCcH
Confidence            445677764      256789999999999988642111100      013444567888888775333 3899999999


Q ss_pred             HHHHHHHHHccCC----CCCCCCEEEEcCCCCcccHHHHHHHHHHc------C---CEEEEEeCCCCC------------
Q 017640          140 EAINLVAYSWGLS----NLKSGDEVILTVAEHHSAIVPWQLVAQKT------G---ANLKFLNLNDDE------------  194 (368)
Q Consensus       140 ~a~~~~~~~~~~~----~~~~gd~vl~~~~~~~s~~~~~~~~~~~~------g---~~v~~v~~~~~~------------  194 (368)
                      +|++.+++..+..    .-..+.+|+.....||+.......+....      +   ..+..+|.....            
T Consensus       118 EAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~  197 (466)
T PRK07030        118 SAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHS  197 (466)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCHHHHH
Confidence            9999999875221    01234578888999998654333221100      0   012223322110            


Q ss_pred             CCCHHHHHHhcc---cCceEEEEcc-cccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCc
Q 017640          195 SPDLDKLKEMLS---RKTKLVVIHH-ISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDA  261 (368)
Q Consensus       195 ~~d~~~l~~~l~---~~~~~v~~~~-~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~  261 (368)
                      .-+++.+++.+.   .++.+|+++. ++...|.+.|    +++|.++|++||+++|+||++. +|..    ..+.....+
T Consensus       198 ~~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~P  277 (466)
T PRK07030        198 RRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIRP  277 (466)
T ss_pred             HHHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccchHHHhcCCCC
Confidence            012455677774   4678999998 5777788776    8999999999999999999976 4432    112234469


Q ss_pred             cEEEecCcCcCCCC--cceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 017640          262 DFLVASSHKMCGPT--GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST  339 (368)
Q Consensus       262 d~~~~s~~K~~g~~--G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~  339 (368)
                      |+++.+  |.+|..  .+|.+++++++.+.+.......+..              ......+.|..+.++..+.++.+++
T Consensus       278 Div~~g--Kgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~--------------~h~~T~~gnpla~aaa~a~L~~i~~  341 (466)
T PRK07030        278 DFLCLS--KALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAF--------------LHSHSYTGNPLACAAALATLDIFEQ  341 (466)
T ss_pred             CEEeee--hhccCCcccceEEEecHHHHHHHhccccccccc--------------ccCCCCCCCHHHHHHHHHHHHHHHh
Confidence            999986  955422  3899999998876543110000000              0001114577778888888888887


Q ss_pred             hCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          340 IGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       340 ~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      .   .+.++.+++.+++.+.|+++
T Consensus       342 ~---~l~~~~~~~G~~l~~~L~~l  362 (466)
T PRK07030        342 D---NVIENNRALARRMAEATAHL  362 (466)
T ss_pred             c---CHHHHHHHHHHHHHHHHHHH
Confidence            4   35677777777777777654

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.53  E-value=1.8e-12  Score=125.42  Aligned_cols=272  Identities=8%  Similarity=0.044  Sum_probs=170.3

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..+      .|+.+|.+.+++.+.+..+......+  .    ..+...++.+.|++++.... +.+.|+++++
T Consensus        54 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~~--~----~~~~~~~lae~L~~~~p~~~-~~v~f~~SGs  126 (460)
T PRK06916         54 NGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAHSTLLG--L----ANVPSILLAEKLIEVVPEGL-KKVFYSDSGA  126 (460)
T ss_pred             CCCEEEEcchhHHHhhcCCCCHHHHHHHHHHHHhCCCccccc--c----CCHHHHHHHHHHHHhCCCCC-CEEEEeCCcH
Confidence            4556788642      46889999999999988742111100  0    12334578888888875332 3899999999


Q ss_pred             HHHHHHHHHccCCC----CCCCCEEEEcCCCCcccHHHHHHHHHHc------C---CEEEEEeCCCC------CC-----
Q 017640          140 EAINLVAYSWGLSN----LKSGDEVILTVAEHHSAIVPWQLVAQKT------G---ANLKFLNLNDD------ES-----  195 (368)
Q Consensus       140 ~a~~~~~~~~~~~~----~~~gd~vl~~~~~~~s~~~~~~~~~~~~------g---~~v~~v~~~~~------~~-----  195 (368)
                      +|++.+++..+...    ...+.+|+.....||+.......+....      +   ..+..+|....      +.     
T Consensus       127 eAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~  206 (460)
T PRK06916        127 TAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIV  206 (460)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHH
Confidence            99999998653110    1234689999999998654333321100      0   01223332210      00     


Q ss_pred             -CCHHHHHHhcc---cCceEEEEcc-cccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCc
Q 017640          196 -PDLDKLKEMLS---RKTKLVVIHH-ISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDA  261 (368)
Q Consensus       196 -~d~~~l~~~l~---~~~~~v~~~~-~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~  261 (368)
                       -+++.+++.++   .++.+|+++. ++...|.+.|    +++|.++|++||+++|+||++. +|..    ..+.....+
T Consensus       207 ~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~a~~~~gv~P  286 (460)
T PRK06916        207 KKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVTP  286 (460)
T ss_pred             HHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhhHHHhcCCCC
Confidence             13556677774   4678999998 5888888765    8999999999999999999975 4332    112223468


Q ss_pred             cEEEecCcCcCCCC--cceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 017640          262 DFLVASSHKMCGPT--GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST  339 (368)
Q Consensus       262 d~~~~s~~K~~g~~--G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~  339 (368)
                      |+++.+  |.+|..  .+|.+++++++.+.+.+........              ......+.|..+.++..++++.+++
T Consensus       287 Div~~g--K~l~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~--------------~~~~T~~gnpl~~aaa~a~l~~l~~  350 (460)
T PRK06916        287 DIMTAG--KGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTF--------------FHGHSYTGNPLGCAVALANLELYEK  350 (460)
T ss_pred             Ceeeee--hhhhcCccccceeeecHHHHHHhhccccccCcc--------------ccCCCCCCCHHHHHHHHHHHHHHHh
Confidence            988764  955432  3899999998876543211000000              0000113467777888888888876


Q ss_pred             hCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          340 IGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       340 ~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      .   .+.++++++.+++.+.|+++
T Consensus       351 ~---~l~~~~~~~g~~l~~~l~~l  371 (460)
T PRK06916        351 T---NLIEQVARKTEYVATQLEDL  371 (460)
T ss_pred             c---cHHHHHHHHHHHHHHHHHHh
Confidence            4   35677888888888777654

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.53  E-value=1.9e-12  Score=123.82  Aligned_cols=270  Identities=9%  Similarity=0.025  Sum_probs=167.0

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..      ..|+..+.+.+++.+.++........+      ...+...++.+.|++.+..+- +.+.|+++++
T Consensus        38 dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~------~~~~~~~~lae~L~~~~p~~~-~~v~f~~SGs  110 (422)
T PRK05630         38 DGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSHVMFGG------LTHEPAIKLTRKLLNLTDNGL-DHVFYSDSGS  110 (422)
T ss_pred             CCCEEEEcchhHHHhcCCCCCHHHHHHHHHHHHhCCCcccCC------cCCHHHHHHHHHHHhhCCCCc-CEEEEeCCcH
Confidence            455678864      357889999999999988642111100      012334467888888775332 3899999999


Q ss_pred             HHHHHHHHHccCCC---C-CCCCEEEEcCCCCcccHHHHHHHHHH-------cC---CEEEEEeCCCCCCCC-------H
Q 017640          140 EAINLVAYSWGLSN---L-KSGDEVILTVAEHHSAIVPWQLVAQK-------TG---ANLKFLNLNDDESPD-------L  198 (368)
Q Consensus       140 ~a~~~~~~~~~~~~---~-~~gd~vl~~~~~~~s~~~~~~~~~~~-------~g---~~v~~v~~~~~~~~d-------~  198 (368)
                      +|++.+++..+...   - ..+.+|+....+||+.......+...       .+   ..+..+|.......+       .
T Consensus       111 eA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  190 (422)
T PRK05630        111 VSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRGSSPQEISEYL  190 (422)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcccCCChHHHHHHH
Confidence            99999998653210   0 12357899999999855333222110       00   112333332111111       2


Q ss_pred             HHHHHhcccCceEEEEccc-ccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEEecC
Q 017640          199 DKLKEMLSRKTKLVVIHHI-SNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASS  268 (368)
Q Consensus       199 ~~l~~~l~~~~~~v~~~~~-~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s~  268 (368)
                      +.+++.+..++.+|+++.. +...|.+.|    +++|.++|++||+++|+||++. +|..    ..+.....+|+++.  
T Consensus       191 ~~~~~~~~~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDi~t~--  268 (422)
T PRK05630        191 RSLELLIDETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGVTPDIMCV--  268 (422)
T ss_pred             HHHHHHHhhceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhhHHHhcCCCCCeeee--
Confidence            4455556667899999985 787888776    8999999999999999999985 3321    11223346888855  


Q ss_pred             cCcCCC--CcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHH
Q 017640          269 HKMCGP--TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIH  346 (368)
Q Consensus       269 ~K~~g~--~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~  346 (368)
                      +|.++.  ..+|.+++++++.+.+..... .+..              ........+....++..++++.+++.   .+.
T Consensus       269 gK~l~gG~~p~~av~~~~~i~~~~~~~~~-~~~~--------------~h~~T~~g~Pla~aaa~aaL~~l~~~---~~~  330 (422)
T PRK05630        269 GKALTGGFMSFAATLCTDKVAQLISTPNG-GGAL--------------MHGPTFMANPLACAVAHASLEIIETG---MWR  330 (422)
T ss_pred             echhhcCccccceeeccHHHHHHHhccCC-CCcc--------------ccCCCCcCCHHHHHHHHHHHHHHHhC---cHH
Confidence            596632  237888899988776542100 0000              00011146677777788888888764   345


Q ss_pred             HHHHHHHHHHHHHHHh
Q 017640          347 AYEVKWIICSIIVIQE  362 (368)
Q Consensus       347 ~~~~~l~~~l~~~l~~  362 (368)
                      +++.++.+++.+.|++
T Consensus       331 ~~~~~~g~~l~~~L~~  346 (422)
T PRK05630        331 KQVKRIEAELIAGLSP  346 (422)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5777777777776654

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=99.53  E-value=3.3e-12  Score=123.48  Aligned_cols=261  Identities=11%  Similarity=0.051  Sum_probs=163.9

Q ss_pred             CeEEeccCC-----CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHH
Q 017640           67 KLVYLDNAA-----TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEA  141 (368)
Q Consensus        67 ~~i~l~~~~-----~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a  141 (368)
                      +.-|+|..+     .|+..|.+.+++.+.+..+....   .    ....+...++.+.|+++++... +.++|++|+++|
T Consensus        71 G~~ylD~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~---~----~~~~~~~~~lae~L~~~~p~~~-~~v~f~~sGseA  142 (459)
T PRK06082         71 GKKYMDFHGNNVHQLGYGHPHVIEKVKEQMAKLPFSP---R----RFTNETAIECAEKLTEIAGGEL-NRVLFAPGGTSA  142 (459)
T ss_pred             CCEEEEcccHhhcccCCCCHHHHHHHHHHHHhCCCcc---C----ccCCHHHHHHHHHHHHhCCCCC-CEEEECCCcHHH
Confidence            445677543     46789999999999988642211   0    0113445578888888886432 389999999999


Q ss_pred             HHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHH------cC---CEEEEEeCCCC----CC-C------CHHHH
Q 017640          142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK------TG---ANLKFLNLNDD----ES-P------DLDKL  201 (368)
Q Consensus       142 ~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~------~g---~~v~~v~~~~~----~~-~------d~~~l  201 (368)
                      +..+++..+.  ...+.+|+.....||+.......+...      .+   ..+..++....    +. .      +++.+
T Consensus       143 ve~AlklAr~--~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  220 (459)
T PRK06082        143 IGMALKLARH--ITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYL  220 (459)
T ss_pred             HHHHHHHHHH--hcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHH
Confidence            9999986532  234567888888888765322222110      00   01222332110    00 0      13457


Q ss_pred             HHhcc--cCceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEEecCcCc
Q 017640          202 KEMLS--RKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKM  271 (368)
Q Consensus       202 ~~~l~--~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s~~K~  271 (368)
                      ++.++  .++.+|+++.+.+..+...|   +++|.++|++||+++|+||++. +|..    ..+.....+|+++  ++|.
T Consensus       221 ~~~i~~~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv~PDiv~--~gKg  298 (459)
T PRK06082        221 EYVIEKEGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEPDILC--IGKG  298 (459)
T ss_pred             HHHHhcCCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhCCCCCEEE--eccc
Confidence            77774  35789999998876433445   8999999999999999999977 3332    1122234689988  5697


Q ss_pred             CCCC--cceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH
Q 017640          272 CGPT--GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYE  349 (368)
Q Consensus       272 ~g~~--G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~  349 (368)
                      +|..  .+|.+++++++........                    ..+ ....|..+.++..++++.+++.   .+.++.
T Consensus       299 l~gG~~P~~av~~~~~i~~~~~~~~--------------------~~~-T~~gnpl~~aaa~a~L~~l~~~---~l~~~~  354 (459)
T PRK06082        299 LGGGLVPIAAMITKDKYNTAAQISL--------------------GHY-THEKSPLGCAAALATIEVIEQE---GLLEKV  354 (459)
T ss_pred             ccCCCCcceEEEEcHHHHhhccCCC--------------------CCC-CCCcCHHHHHHHHHHHHHHHhc---CHHHHH
Confidence            6643  2788888887643221100                    001 1245666677778888888764   356777


Q ss_pred             HHHHHHHHHHHHhh
Q 017640          350 VKWIICSIIVIQER  363 (368)
Q Consensus       350 ~~l~~~l~~~l~~~  363 (368)
                      .++.+++.+.|+++
T Consensus       355 ~~~g~~l~~~L~~l  368 (459)
T PRK06082        355 KADSQFMRERLLEM  368 (459)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777777777654

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.53  E-value=5.8e-12  Score=121.80  Aligned_cols=263  Identities=14%  Similarity=0.123  Sum_probs=165.1

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCC--CCcEEEe-C
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD--SGEIVFT-K  136 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~--~~~v~~t-~  136 (368)
                      ++.-|+|..      ..|+.+|.+.+++++++........  ...    ..+...++.+.+.+.+...-  .+.++|+ +
T Consensus        61 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~--~~~----~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~  134 (464)
T PRK06938         61 EGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELPLHT--LDL----TTPVKDQFVQDLFASLPEAFAREAKIQFCGP  134 (464)
T ss_pred             CCCEEEEccCCccccccCCCCHHHHHHHHHHHHhhhcccc--ccc----CCHHHHHHHHHHHHhCcccccccceEEEeCC
Confidence            455677763      3567899999999998864211110  001    12333356666777664321  1256665 7


Q ss_pred             CHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHc------C---CEEEEEeCCCCCC------------
Q 017640          137 NATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKT------G---ANLKFLNLNDDES------------  195 (368)
Q Consensus       137 g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~------g---~~v~~v~~~~~~~------------  195 (368)
                      ++++|++.+++..+.  ...+.+|+.....||+.......+....      +   ..+..++...+..            
T Consensus       135 SGSEAve~AlklAr~--~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  212 (464)
T PRK06938        135 TGTDAVEAALKLVKT--ATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVR  212 (464)
T ss_pred             CcHHHHHHHHHHHHH--hhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHH
Confidence            899999999997632  3445688888999998765444321100      0   1233444332111            


Q ss_pred             CCHHHHHHhccc------CceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCC
Q 017640          196 PDLDKLKEMLSR------KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLD  260 (368)
Q Consensus       196 ~d~~~l~~~l~~------~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~  260 (368)
                      .+++.+++.+.+      ++.+|+++..+...|.+.|    ++++.++|++||+++|+||++. +|..    ..+.....
T Consensus       213 ~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~  292 (464)
T PRK06938        213 ANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGII  292 (464)
T ss_pred             HHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCC
Confidence            135677777753      5789999999888888776    8999999999999999999976 4332    12223346


Q ss_pred             ccEEEecCcCcCCC-CcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 017640          261 ADFLVASSHKMCGP-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST  339 (368)
Q Consensus       261 ~d~~~~s~~K~~g~-~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~  339 (368)
                      +|+++.+  |.+|. ..+|.+++++++ +.+.+...+.                     ....|..+.++..+.++.+++
T Consensus       293 PDiv~~g--KglggG~PlsAv~~~~~~-~~~~~~~~~~---------------------T~~gnpla~Aaa~a~L~~l~~  348 (464)
T PRK06938        293 PDVVVLS--KAIGGSLPLAVVVYREWL-DTWQPGAHAG---------------------TFRGNQMAMAAGSATLRYIKE  348 (464)
T ss_pred             CCEEEee--ccccCCCceEEEeehhHh-hccCCCCCCC---------------------CCCcCHHHHHHHHHHHHHHHH
Confidence            9999986  95542 228888888774 4443221111                     114566677777788887776


Q ss_pred             hCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          340 IGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       340 ~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                         +.+.++.+++.+++.+.|+++
T Consensus       349 ---~~l~~~~~~~G~~l~~~L~~l  369 (464)
T PRK06938        349 ---HRLAEHAAAMGERLREHLRQL  369 (464)
T ss_pred             ---hHHHHHHHHHHHHHHHHHHHH
Confidence               345567777777777766654

>PRK07483 hypothetical protein; Provisional

Probab=99.52  E-value=4e-12  Score=122.40  Aligned_cols=268  Identities=13%  Similarity=0.074  Sum_probs=165.5

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..+      .|+.+|.+.+++.+.++..... +.+. .    ..+...++.+.|++.+.... +.+.|+++++
T Consensus        28 dG~~ylD~~~g~~~~~lGh~~p~v~~av~~ql~~~~~~-~~~~-~----~~~~~~~lae~L~~~~p~~~-~~v~f~~sGs  100 (443)
T PRK07483         28 TGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLAYA-HTSF-F----TTEPAEALADRLVAAAPAGL-EHVYFVSGGS  100 (443)
T ss_pred             CCCEEEEcCccHhhhccCCCCHHHHHHHHHHHHhccCc-cccc-c----CCHHHHHHHHHHHHhCCCCC-CEEEEcCCcH
Confidence            4456777643      5678999999999998864211 1111 1    12334467788888775332 3899999999


Q ss_pred             HHHHHHHHHccCCC---C-CCCCEEEEcCCCCcccHHHHHHHHHH------cC---CEEEEEeCCCCCCC----------
Q 017640          140 EAINLVAYSWGLSN---L-KSGDEVILTVAEHHSAIVPWQLVAQK------TG---ANLKFLNLNDDESP----------  196 (368)
Q Consensus       140 ~a~~~~~~~~~~~~---~-~~gd~vl~~~~~~~s~~~~~~~~~~~------~g---~~v~~v~~~~~~~~----------  196 (368)
                      +|++.+++..+...   - ..+.+|+.....||+.......+...      .+   ..+..++....+..          
T Consensus       101 EAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (443)
T PRK07483        101 EAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDEAY  180 (443)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccccccCCCHHHH
Confidence            99999998653210   0 22357888899999865433332110      00   01122322111110          


Q ss_pred             ---CHHHHHHhcc----cCceEEEEccccc-ccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCC
Q 017640          197 ---DLDKLKEMLS----RKTKLVVIHHISN-MLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGL  259 (368)
Q Consensus       197 ---d~~~l~~~l~----~~~~~v~~~~~~n-~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~  259 (368)
                         .++.+++.+.    +++.+|+++.++. ..|.+.|    +++|.++|++||+++|+||++. +|..    ..+....
T Consensus       181 ~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv  260 (443)
T PRK07483        181 GQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGV  260 (443)
T ss_pred             HHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCC
Confidence               0255666553    4578999999875 3577666    8999999999999999999977 4332    1122234


Q ss_pred             CccEEEecCcCcCCCC--cceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 017640          260 DADFLVASSHKMCGPT--GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL  337 (368)
Q Consensus       260 ~~d~~~~s~~K~~g~~--G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~  337 (368)
                      .+|+++.+  |.+|..  .+|.+++++++.+.+.+.. +...                .......|..+.++..+.++.+
T Consensus       261 ~PDiv~~g--K~l~gG~~Pi~av~~~~~i~~~~~~~~-~~~~----------------h~~T~~gnpl~~aaa~a~l~~i  321 (443)
T PRK07483        261 APDLVTIA--KGLGAGYQPIGAVLASDRIYDAIADGS-GFFQ----------------HGHTYLGHATACAAALAVQRVI  321 (443)
T ss_pred             CCCeeeeh--hhhccCccccEEEEEcHHHHHHHhcCC-Cccc----------------cCCCCCCCHHHHHHHHHHHHHH
Confidence            68999886  955432  3899999998876654210 0000                0001145677777888888888


Q ss_pred             HHhCHHHHHHHHHHHHHHHHHHHHh
Q 017640          338 STIGMQKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       338 ~~~g~~~i~~~~~~l~~~l~~~l~~  362 (368)
                      ++.   .+.++++++.+++.+.|++
T Consensus       322 ~~~---~l~~~~~~~g~~l~~~L~~  343 (443)
T PRK07483        322 AED---GLLANVRARGEQLRARLRE  343 (443)
T ss_pred             Hhc---CHHHHHHHHHHHHHHHHHH
Confidence            774   4566677777777776654

>PRK07480 putative aminotransferase; Validated

Probab=99.51  E-value=3.5e-12  Score=123.17  Aligned_cols=269  Identities=12%  Similarity=-0.016  Sum_probs=163.3

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..      ..|+..|.+.+++.+.+..+....   ...  ....+...++.+.|++.+.... +.+.|+++++
T Consensus        48 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~---~~~--~~~~~~~~~lae~L~~~~p~~~-~~v~f~~SGs  121 (456)
T PRK07480         48 EGNKILDGMAGLWCVNVGYGRKELADAAARQMRELPYYN---TFF--KTTHPPAIELAAKLAEVAPPGF-NHVFFTNSGS  121 (456)
T ss_pred             CCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCcc---ccc--ccCCHHHHHHHHHHHHhCCCCc-CEEEEeCCcH
Confidence            445678874      356789999999999988642111   000  0113444568888888875433 3899999999


Q ss_pred             HHHHHHHHHccCCC---C-CCCCEEEEcCCCCcccHHHHHHHHH------HcCC---EEEEEeCCCCC----CCC-----
Q 017640          140 EAINLVAYSWGLSN---L-KSGDEVILTVAEHHSAIVPWQLVAQ------KTGA---NLKFLNLNDDE----SPD-----  197 (368)
Q Consensus       140 ~a~~~~~~~~~~~~---~-~~gd~vl~~~~~~~s~~~~~~~~~~------~~g~---~v~~v~~~~~~----~~d-----  197 (368)
                      +|++.+++..+...   - ..+.+|+.....||+.......+..      ..+.   .+..++.....    ..+     
T Consensus       122 eA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  201 (456)
T PRK07480        122 EANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFG  201 (456)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcccccccCCChHHHH
Confidence            99999998653210   0 1245788888888885422111100      0010   11122211000    001     


Q ss_pred             ---HHHHHHhcc----cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCccc----ccCCCCCc
Q 017640          198 ---LDKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLDA  261 (368)
Q Consensus       198 ---~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~~----~~~~~~~~  261 (368)
                         ++.+++.+.    .++.+|+++.++...|.+.|    +++|.++|++||+++|+||++. +|..-    .+.....+
T Consensus       202 ~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~P  281 (456)
T PRK07480        202 LAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFGIKP  281 (456)
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhhhhhcCCCC
Confidence               255655552    46789999999988898877    9999999999999999999985 54331    12223468


Q ss_pred             cEEEecCcCcCCCC--cceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 017640          262 DFLVASSHKMCGPT--GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST  339 (368)
Q Consensus       262 d~~~~s~~K~~g~~--G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~  339 (368)
                      |+++.+  |.+|..  .+|.+++++++.+.+... .+...                .....+.|..+.++..++|+.+++
T Consensus       282 Div~~g--K~l~gG~~Pi~av~~~~~i~~~~~~~-~~~~~----------------~~~T~~gnpl~~Aaa~a~L~~l~~  342 (456)
T PRK07480        282 DLMTIA--KGLTSGYIPMGAVGVGDRVAEVLIEE-GGEFN----------------HGFTYSGHPVAAAVALANLRILRD  342 (456)
T ss_pred             Ceeeee--hhhccCCccceEEEEcHHHHHHHhcC-CCCcc----------------cCCCCCcCHHHHHHHHHHHHHHHh
Confidence            988775  965532  378888898887655210 00000                001125677788888888888887


Q ss_pred             hCHHHHHHHH-HHHHHHHHHHHHh
Q 017640          340 IGMQKIHAYE-VKWIICSIIVIQE  362 (368)
Q Consensus       340 ~g~~~i~~~~-~~l~~~l~~~l~~  362 (368)
                      .+   +.+++ +++.+++.+.|++
T Consensus       343 ~~---l~~~~~~~~g~~l~~~l~~  363 (456)
T PRK07480        343 EG---IVERVRDDTGPYLQKRLRE  363 (456)
T ss_pred             CC---HHHHHHHHHHHHHHHHHHH
Confidence            44   44455 3555555555544

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.50  E-value=5.4e-12  Score=110.97  Aligned_cols=258  Identities=12%  Similarity=0.118  Sum_probs=179.1

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      .+.-|||.-+      .|++.|.+.+++++..+.+.-..   .    ....+..-+..+.+.++||-+   .|+-++.+.
T Consensus        57 eGk~ylDflsaysaVnqGhchpki~~aLqeq~~kLtlss---r----afYnd~~~~f~~~vt~lf~~~---kvlpmnTGa  126 (427)
T KOG1402|consen   57 EGKEYLDFLSAYSAVNQGHCHPKIIKALQEQADKLTLSS---R----AFYNDVLGEFAEYVTKLFGYD---KVLPMNTGA  126 (427)
T ss_pred             CccchhhhhhhhhhcccCCCCHHHHHHHHHHHhHhhhhh---H----HHhhhhHHHHHHHHHHhcCcc---eeeecccch
Confidence            4455777632      55789999999999988653221   0    112566678999999999986   778888778


Q ss_pred             HHHHHHHHHccCCC--CC--C-CC-EEEEcCCCCcccHHHHHHH------HHHcC----CEEEEEeCCCCCCCCHHHHHH
Q 017640          140 EAINLVAYSWGLSN--LK--S-GD-EVILTVAEHHSAIVPWQLV------AQKTG----ANLKFLNLNDDESPDLDKLKE  203 (368)
Q Consensus       140 ~a~~~~~~~~~~~~--~~--~-gd-~vl~~~~~~~s~~~~~~~~------~~~~g----~~v~~v~~~~~~~~d~~~l~~  203 (368)
                      ||.+.++...++..  .+  | .. .|+....+|++-......+      -..+|    ..+..||.+     |.++|+.
T Consensus       127 Ea~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~Y~-----d~eale~  201 (427)
T KOG1402|consen  127 EAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPYG-----DAEALEV  201 (427)
T ss_pred             hHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcceeeccC-----CHHHHHH
Confidence            99999987654111  11  2 22 3444455555421110000      00111    113334433     8899999


Q ss_pred             hccc-CceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-C---Ccc-cccCCCCCccEEEecCcCcCC
Q 017640          204 MLSR-KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-V---PHM-VVDVQGLDADFLVASSHKMCG  273 (368)
Q Consensus       204 ~l~~-~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~---~~~-~~~~~~~~~d~~~~s~~K~~g  273 (368)
                      +++. +.+.++++.++..-|++.|    +++..++|.+|++++|.|++|. +   |.+ ..|.+...+|+++..  |.++
T Consensus       202 ~l~~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d~env~PDivilg--KalS  279 (427)
T KOG1402|consen  202 ALKSPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENVRPDIVILG--KALS  279 (427)
T ss_pred             HhcCCCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEeehhhcCCCeEEEe--cccc
Confidence            9965 6799999999999999998    9999999999999999999997 2   222 446677789999987  8554


Q ss_pred             --CCcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Q 017640          274 --PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVK  351 (368)
Q Consensus       274 --~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~  351 (368)
                        ...+..++++++++-.+.|.-.|.+.                     .-|.++.....++++.+.+   +.+.++...
T Consensus       280 GG~~Pvsavl~~~~im~~~~pgeHgsTy---------------------ggNpLg~~vaiAalevi~e---ekL~era~~  335 (427)
T KOG1402|consen  280 GGVYPVSAVLADDDIMLNIKPGEHGSTY---------------------GGNPLGCAVAIAALEVIVE---EKLVERAAK  335 (427)
T ss_pred             CCeeeeEEEEecHHHHhccCCCcccccc---------------------CCChHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence              33478888899987777776654322                     3456666677788888887   677888999


Q ss_pred             HHHHHHHHHHhhc
Q 017640          352 WIICSIIVIQERH  364 (368)
Q Consensus       352 l~~~l~~~l~~~~  364 (368)
                      |-..++.+|.+++
T Consensus       336 lG~~l~~~L~~l~  348 (427)
T KOG1402|consen  336 LGEILRDQLNKLQ  348 (427)
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999887763

>PRK07036 hypothetical protein; Provisional

Probab=99.50  E-value=3.3e-12  Score=123.72  Aligned_cols=273  Identities=10%  Similarity=0.022  Sum_probs=167.0

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++--|+|..      ..|+.+|.+.+++.+.+.........+     ....+...++.+.|++.+...- +.|.|++|++
T Consensus        49 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~-----~~~~~~~~~lae~L~~~~p~~~-~~v~f~~sGs  122 (466)
T PRK07036         49 DGRRYLDGIGGMWCVNVGYGREEMADAIADQARRLPYYTPFG-----DMTNAPAAELAAKLAELAPGDL-NHVFLTTGGS  122 (466)
T ss_pred             CCCEEEECcccHHhhcCCCCCHHHHHHHHHHHHhCccccccc-----ccCCHHHHHHHHHHHHhCCCCc-CEEEEeCCch
Confidence            445678863      346789999999999887642111000     0012334467777877764332 3899999999


Q ss_pred             HHHHHHHHHccCCC---C-CCCCEEEEcCCCCcccHHHHHHHHHHcC---------CEEEEEeCCCC----CCC------
Q 017640          140 EAINLVAYSWGLSN---L-KSGDEVILTVAEHHSAIVPWQLVAQKTG---------ANLKFLNLNDD----ESP------  196 (368)
Q Consensus       140 ~a~~~~~~~~~~~~---~-~~gd~vl~~~~~~~s~~~~~~~~~~~~g---------~~v~~v~~~~~----~~~------  196 (368)
                      +|++.+++..+...   - ..+.+|+....+||+.......+....+         ..+..++....    ...      
T Consensus       123 eAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  202 (466)
T PRK07036        123 TAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFC  202 (466)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCChHHHH
Confidence            99999998652110   0 1246788888889886533222211100         11233332210    000      


Q ss_pred             --CHHHHHHhcc----cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCccc--cc---CCCCC
Q 017640          197 --DLDKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV--VD---VQGLD  260 (368)
Q Consensus       197 --d~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~~--~~---~~~~~  260 (368)
                        .++.+++.+.    +++.+|+++.++...|.+.|    +++|.++|++||+++|+||++. +|..-  +-   .....
T Consensus       203 ~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~  282 (466)
T PRK07036        203 DFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGIQ  282 (466)
T ss_pred             HHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhhhhhhhcCCC
Confidence              1234455443    35789999999998999887    9999999999999999999985 54431  11   22346


Q ss_pred             ccEEEecCcCcCCCC--cceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 017640          261 ADFLVASSHKMCGPT--GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS  338 (368)
Q Consensus       261 ~d~~~~s~~K~~g~~--G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~  338 (368)
                      +|+++.+  |.+|..  .+|.+++++++.+.+.+....+..    +          ..-...+.+..+.++..+.++.++
T Consensus       283 PDivt~g--K~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~----~----------~~~~T~~gnpl~~aaa~a~Le~i~  346 (466)
T PRK07036        283 PDIITFA--KGLTSGYQPLGAVIISERLLDVISGPNAKGNV----F----------THGFTYSGHPVACAAALKNIEIME  346 (466)
T ss_pred             CCEEEEc--cccccCccccEEEEEcHHHHHHHhcccCcCcc----c----------ccCCCCCCCHHHHHHHHHHHHHHH
Confidence            8988775  966532  388899999987765431000000    0          000011456677777888888887


Q ss_pred             HhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          339 TIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       339 ~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +.   .+.++++++.+++.+.|.++
T Consensus       347 ~~---~l~~~~~~~g~~l~~~L~~l  368 (466)
T PRK07036        347 RE---GLCEHVREVGPYFEERLASL  368 (466)
T ss_pred             hC---CHHHHHHHHHHHHHHHHHHh
Confidence            63   45667777777777777543

>PRK06917 hypothetical protein; Provisional

Probab=99.50  E-value=7e-12  Score=120.87  Aligned_cols=269  Identities=11%  Similarity=0.049  Sum_probs=165.7

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..      ..|+..|.|.+++++.+........ . ..    ..+...++.+.|++.+.... +.++|+++++
T Consensus        29 dG~~ylD~~~g~~~~~lGh~hp~v~~Ai~~ql~~~~~~~~-~-~~----~~~~~~~lae~L~~~~p~~~-~~v~f~~sGs  101 (447)
T PRK06917         29 NGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEEVSFVYR-S-QF----TSEPAEKLAKKLSDLSPGDL-NWSFFVNSGS  101 (447)
T ss_pred             CCCEEEECchhHHhccCCCCCHHHHHHHHHHHhhCcCccc-c-cc----CCHHHHHHHHHHHHhCCCCC-CEEEEeCChH
Confidence            344577763      2567899999999999887421110 0 01    12344578888888875432 3789999999


Q ss_pred             HHHHHHHHHccCC----CCCCCCEEEEcCCCCcccHHHHHHHHHHcCC---------EEEEEeCCCCCC-----------
Q 017640          140 EAINLVAYSWGLS----NLKSGDEVILTVAEHHSAIVPWQLVAQKTGA---------NLKFLNLNDDES-----------  195 (368)
Q Consensus       140 ~a~~~~~~~~~~~----~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~---------~v~~v~~~~~~~-----------  195 (368)
                      +|++.+++.....    ....+.+|+.....||+.......+....+.         .+..++......           
T Consensus       102 EAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  181 (447)
T PRK06917        102 EANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQ  181 (447)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHHH
Confidence            9999999865211    1133468999999999876544332211000         112222110000           


Q ss_pred             -CCHHHHHHhcc----cCceEEEEcccccc-cccccC----HHHHHHHHHhcCCEEEEecCCc-CCccc----ccCCCCC
Q 017640          196 -PDLDKLKEMLS----RKTKLVVIHHISNM-LASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLD  260 (368)
Q Consensus       196 -~d~~~l~~~l~----~~~~~v~~~~~~n~-tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~~----~~~~~~~  260 (368)
                       -+++.+++.++    +++.+|+++..... .|.+.|    +++|.++|++||+++|+||++. +|..-    .+.....
T Consensus       182 ~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~  261 (447)
T PRK06917        182 LACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVE  261 (447)
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCCC
Confidence             02456676664    35789999988764 456665    8999999999999999999986 33221    1122345


Q ss_pred             ccEEEecCcCcCCCC--cceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 017640          261 ADFLVASSHKMCGPT--GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS  338 (368)
Q Consensus       261 ~d~~~~s~~K~~g~~--G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~  338 (368)
                      +|+++.+  |.+|..  .+|.+++++++.+.+.+.. +  ..              ......+.|..+.++..++++.++
T Consensus       262 PDi~~~g--K~l~~G~~Pi~a~~~~~~i~~~~~~~~-~--~~--------------~~~~T~~gnpl~~aaa~a~l~~l~  322 (447)
T PRK06917        262 PDIMTLG--KGLGAGYTPIAATVVSDRVMEPILRGS-R--SI--------------MSGHTLSANPLSAATALAVLEYME  322 (447)
T ss_pred             CCEEEee--ehhccCCcceEEEEEcHHHHHHHhccC-c--cc--------------ccccCCCCCHHHHHHHHHHHHHHH
Confidence            8987765  966532  3788889988876554211 0  00              000011456777888888888887


Q ss_pred             HhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          339 TIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       339 ~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +.   .+.+++.++.+++.+.|+++
T Consensus       323 ~~---~l~~~~~~~g~~l~~~L~~l  344 (447)
T PRK06917        323 KH---NLPEKAAEKGEYLIKGLQKV  344 (447)
T ss_pred             HC---CHHHHHHHHHHHHHHHHHHH
Confidence            64   35566777777777766654

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.50  E-value=5e-12  Score=121.18  Aligned_cols=270  Identities=9%  Similarity=0.001  Sum_probs=166.9

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|||..+      .|+..|.+.+++.+.+.+...... .. .    ..+...++.+.|++.+...- +.|.|+++++
T Consensus        42 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~-~~-~----~~~~~~~lae~L~~~~p~~~-~~v~f~~sGs  114 (429)
T PRK06173         42 DGRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKMSHIMF-GG-F----THEPAVELAQKLLEILPPSL-NKIFFADSGS  114 (429)
T ss_pred             CCCEEEEccchHHhccCCCCCHHHHHHHHHHHHhcCCccc-cc-c----CCHHHHHHHHHHHhhCCCCc-CEEEEeCCch
Confidence            4456888643      467889999999998886421111 00 0    12334578888888775333 3899999999


Q ss_pred             HHHHHHHHHccCCC---C-CCCCEEEEcCCCCcccHHHHHHHHH----H---cC---CEEEEEeCCCCC------CCCHH
Q 017640          140 EAINLVAYSWGLSN---L-KSGDEVILTVAEHHSAIVPWQLVAQ----K---TG---ANLKFLNLNDDE------SPDLD  199 (368)
Q Consensus       140 ~a~~~~~~~~~~~~---~-~~gd~vl~~~~~~~s~~~~~~~~~~----~---~g---~~v~~v~~~~~~------~~d~~  199 (368)
                      +|++.+++..+...   - ..+.+|+.....||+.......+..    .   .+   ..+..+|.....      .-+++
T Consensus       115 eAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~  194 (429)
T PRK06173        115 VAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIE  194 (429)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCcccchhHHHHHHH
Confidence            99999998753210   1 1245788888888885322111100    0   00   012233321100      11356


Q ss_pred             HHHHhcc---cCceEEEEccc-ccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEEe
Q 017640          200 KLKEMLS---RKTKLVVIHHI-SNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVA  266 (368)
Q Consensus       200 ~l~~~l~---~~~~~v~~~~~-~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~~  266 (368)
                      .|++.+.   .++.+|+++.. +...|.+.|    +++|.++|++||+++|+||+|. +|..    ..+.....+|+++ 
T Consensus       195 ~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~-  273 (429)
T PRK06173        195 PLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGVVPDIMC-  273 (429)
T ss_pred             HHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchHHHhcCCCCCEEE-
Confidence            6777774   46789999996 888888765    8999999999999999999984 2221    1122234689887 


Q ss_pred             cCcCcCCCC--cceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHH
Q 017640          267 SSHKMCGPT--GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQK  344 (368)
Q Consensus       267 s~~K~~g~~--G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~  344 (368)
                       ++|.+|..  .++.+++++++.+.+.+...+...                .......+....++..++++.+++.   .
T Consensus       274 -~gK~l~gG~~p~~a~~~~~~i~~~~~~~~~~~~~----------------~~~T~~g~p~~~aaa~a~l~~i~~~---~  333 (429)
T PRK06173        274 -IGKALTGGYLTLSATITTEAIAQTICSGEAKCFM----------------HGPTFMANPLACAIAAESIRLLLES---P  333 (429)
T ss_pred             -eehhhhCCccccceEEecHHHHHHHhcCCCCccc----------------cCCCCCcCHHHHHHHHHHHHHHHhC---C
Confidence             57965422  268888888877665421100000                0001135677777888888888774   3


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q 017640          345 IHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       345 i~~~~~~l~~~l~~~l~~~  363 (368)
                      +.++++++.+++.+.|++.
T Consensus       334 ~~~~~~~~g~~l~~~L~~~  352 (429)
T PRK06173        334 WQQNIQRIEAQLKQELAPA  352 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            4677888888888877654

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=99.49  E-value=1.9e-14  Score=130.41  Aligned_cols=230  Identities=18%  Similarity=0.250  Sum_probs=56.8

Q ss_pred             CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCC
Q 017640           76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLK  155 (368)
Q Consensus        76 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~  155 (368)
                      -.+.++++.+++.+....+. |....... +.. ......+.+.++.+.|+++   -+++++...|+.+++.++     .
T Consensus        15 Rs~l~~~a~~a~~~~a~~Y~-nLE~dl~~-G~R-g~R~~~v~~ll~~ltgAea---A~VvNnnaAAv~L~l~~l-----a   83 (367)
T PF03841_consen   15 RSPLSEEAIEAVAEVASGYS-NLEYDLET-GKR-GSRYAHVEELLCELTGAEA---ALVVNNNAAAVLLALNTL-----A   83 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccc-cccccccc-ccc-ccccccccccccccccccc---cccccccccccccccccc-----c
Confidence            34778888888876655431 11111111 111 2224467888999999974   366777678999998876     3


Q ss_pred             CCCEEEEcCCCCcccHHH--HHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEccccccc--cc--ccCHHH
Q 017640          156 SGDEVILTVAEHHSAIVP--WQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNML--AS--ILPIEE  229 (368)
Q Consensus       156 ~gd~vl~~~~~~~s~~~~--~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~t--G~--~~~l~~  229 (368)
                      +|.+|+++..+-.-+-..  +..+.+..|+++++|-.. | .-.+++++++|+++|.+++..|.+|..  |.  ..++++
T Consensus        84 ~~~EvIvsRGelVeiGgsFRip~vm~~sGa~lvEVGtt-N-~t~~~Dye~AI~e~Ta~ll~Vh~Sn~~i~GFt~~~~~~e  161 (367)
T PF03841_consen   84 KGKEVIVSRGELVEIGGSFRIPDVMRQSGARLVEVGTT-N-RTHLSDYEKAITENTAALLKVHTSNFRIQGFTGEVSLEE  161 (367)
T ss_dssp             -------------------------------------------------------------------------------H
T ss_pred             cccccccccccccccccccccccccccccccccccccc-c-ccccccccccccccccccccccccccccccccccccHHH
Confidence            577888887654432222  334566779999888754 2 225788999999999999988887773  32  336999


Q ss_pred             HHHHHHhcCCEEEEecCCc---------CCccc--ccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCc
Q 017640          230 IVHWSHDVGAKVLVDACQS---------VPHMV--VDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGE  298 (368)
Q Consensus       230 i~~l~~~~g~~li~D~a~~---------~~~~~--~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~  298 (368)
                      +++++++|++++++|...+         ++..|  .+.-+.++|++++|..|++|++..|++++++++|++++..--+  
T Consensus       162 l~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGPQaGiI~Gkk~lI~~lk~~pl~--  239 (367)
T PF03841_consen  162 LAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGPQAGIIVGKKELIEKLKKHPLG--  239 (367)
T ss_dssp             HHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSSSSS-S-EEEEEEHHHHHHHHHHHHT--
T ss_pred             HHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCCCeEEEEeCHHHHHHHhhCCCc--
Confidence            9999999999999999974         22221  1223458999999999988877789999999999987622110  


Q ss_pred             ceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 017640          299 MISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST  339 (368)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~  339 (368)
                                      +.+   ..+-..++++.++++.+.+
T Consensus       240 ----------------Ral---rvdK~tla~L~atL~~Y~~  261 (367)
T PF03841_consen  240 ----------------RAL---RVDKLTLAALEATLRLYLD  261 (367)
T ss_dssp             ----------------TT----B--HHHHHHHHHHHHH---
T ss_pred             ----------------ceE---eeCHHHHHHHHHHHHHHHH
Confidence                            112   3456678888888887664

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.48  E-value=9.4e-12  Score=120.44  Aligned_cols=269  Identities=11%  Similarity=0.035  Sum_probs=164.2

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC----CCCcEEEe
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS----DSGEIVFT  135 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~----~~~~v~~t  135 (368)
                      ++.-|+|..      ..|+..|.+.+++.+.+..+......+  .    ..+...++.+.|++.+...    .-+.|.|+
T Consensus        62 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l~~~~~~~--~----~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~  135 (472)
T PRK08742         62 DGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVMLAG--F----THEPAVQLAEQLLAIAPRQDGRAPLSKVFYA  135 (472)
T ss_pred             CCCEEEEcCccHHhccCCCCCHHHHHHHHHHHHhCCCccccc--c----CCHHHHHHHHHHHHhCCCcccCCCCCEEEEe
Confidence            445677764      356789999999999887642211100  1    1233446777888877531    12389999


Q ss_pred             CCHHHHHHHHHHHccCCCC----CCCCEEEEcCCCCcccHHHHHHHHHHc------C---CEEEEEeCCCCCC-------
Q 017640          136 KNATEAINLVAYSWGLSNL----KSGDEVILTVAEHHSAIVPWQLVAQKT------G---ANLKFLNLNDDES-------  195 (368)
Q Consensus       136 ~g~t~a~~~~~~~~~~~~~----~~gd~vl~~~~~~~s~~~~~~~~~~~~------g---~~v~~v~~~~~~~-------  195 (368)
                      +++++|++.+++..+....    ..+.+|+....+||+............      +   ..+..+|......       
T Consensus       136 ~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~  215 (472)
T PRK08742        136 DNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSA  215 (472)
T ss_pred             CCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccccccCCCH
Confidence            9999999999987532100    224679999999998654333221100      0   0122333321110       


Q ss_pred             -----CCHHHHHHhcc---cCceEEEEcc-cccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCccc----ccCC
Q 017640          196 -----PDLDKLKEMLS---RKTKLVVIHH-ISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQ  257 (368)
Q Consensus       196 -----~d~~~l~~~l~---~~~~~v~~~~-~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~~----~~~~  257 (368)
                           .+++.+++.+.   .++.+|+++. .++..|.+.|    ++++.++|++||+++|+||++. +|..-    .+..
T Consensus       216 ~~~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~~  295 (472)
T PRK08742        216 EDYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQA  295 (472)
T ss_pred             HHHHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchHHHhc
Confidence                 12566677664   4678999998 5777888766    8999999999999999999976 54331    2222


Q ss_pred             CCCccEEEecCcCcCCCC--cceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 017640          258 GLDADFLVASSHKMCGPT--GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAID  335 (368)
Q Consensus       258 ~~~~d~~~~s~~K~~g~~--G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~  335 (368)
                      ...+|+++.+  |.+|..  .+|.+++++++.+.+.+....+..               ......+.+..+.++..++++
T Consensus       296 gv~PDiv~~g--Kgl~gG~~Plaav~~~~ei~~~~~~~~~~~~~---------------~h~~T~~gnpl~~Aaa~a~L~  358 (472)
T PRK08742        296 GVMPDLLCLS--KGLTGGFLPLSAVLATQQLYDAFLDDSRERAF---------------LHSHSYTGNPLACAAALATLD  358 (472)
T ss_pred             CCCCCEEEEc--ccccCCCCCcceeeccHHHHHHhhccCccCcc---------------CcCCCCCccHHHHHHHHHHHH
Confidence            3469999986  965432  388899999887654321100000               000111457777888888888


Q ss_pred             HHHHhCHHHHHHHHHHHHHHHHHHH
Q 017640          336 YLSTIGMQKIHAYEVKWIICSIIVI  360 (368)
Q Consensus       336 ~~~~~g~~~i~~~~~~l~~~l~~~l  360 (368)
                      .+++.+   +.++..++.+++.+.+
T Consensus       359 ~i~~~~---l~~~~~~~g~~l~~~~  380 (472)
T PRK08742        359 IFADDD---VIARNQPTAARMTQLA  380 (472)
T ss_pred             HHHHCC---HHHHHHHHHHHHHHHH
Confidence            888754   3444444444444433

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=99.47  E-value=6.5e-13  Score=119.92  Aligned_cols=219  Identities=14%  Similarity=0.172  Sum_probs=125.9

Q ss_pred             EEeccCCCCCCcHHHHHHHHHHHHHhhcc--CCCCcchhhH-HHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHH
Q 017640           69 VYLDNAATSQKPIAVLKALQNYYEAYNSN--VHRGIHFLSA-KATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV  145 (368)
Q Consensus        69 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~  145 (368)
                      ..||-. .|.+.+++++--...+.-....  ...|....+| +..+.+.++|+.+++++|++.+ +|++..+++-.++.-
T Consensus        25 L~Ldmt-RGKPs~eQLdLS~~lL~~~~~~~~~~dG~D~RNY~G~l~Gipe~r~l~a~llgv~~~-~viv~gNSSL~lM~d  102 (425)
T PF12897_consen   25 LKLDMT-RGKPSPEQLDLSNPLLDLPGSSDYLADGTDCRNYPGGLDGIPEARELFAELLGVPPE-NVIVGGNSSLNLMHD  102 (425)
T ss_dssp             --EES----S--HHHHHGGGGGGGSSTTCCBECTTEBTTSS-S-SS--HHHHHHHHHHHTS-GG-GEEE-SS-HHHHHHH
T ss_pred             CCcccC-CCCCCHHHHhhhHHHhcCCCCccccCCCccccCCCCccCChHHHHHHHHHHhCCCHH-HEEEeccchHHHHHH
Confidence            355543 3455555555433333221111  1134555667 7788899999999999999986 887776655433322


Q ss_pred             H--HHccC------CCCC--CCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc--Cce-EE
Q 017640          146 A--YSWGL------SNLK--SGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR--KTK-LV  212 (368)
Q Consensus       146 ~--~~~~~------~~~~--~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~--~~~-~v  212 (368)
                      .  .++..      .++.  +.-+.+++.|.|-    -...+++.+|++++.||.+++|. |++.+|+.+.+  .+| +.
T Consensus       103 ~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYD----RHFai~E~~Giemi~VpM~~dGP-DmD~Ve~LV~~D~svKGiW  177 (425)
T PF12897_consen  103 TISRAMLHGVPGSETPWCKEEKVKFLCPVPGYD----RHFAITEHFGIEMIPVPMTEDGP-DMDMVEELVAEDPSVKGIW  177 (425)
T ss_dssp             HHHHHHHH--TT-SS-GGGSS--EEEEEES--H----HHHHHHHHCT-EEEEEEEETTEE--HHHHHHHTHTSTTEEEEE
T ss_pred             HHHHHHhcCCCCCCCCchhccCceEEecCCCch----HHHHHHHhhCcEEEecCCCCCCC-CHHHHHHHHhcCCccceEE
Confidence            2  22100      1111  2337899999554    45677888999999999999988 99999999854  344 56


Q ss_pred             EEcccccccccccCHHHHHHHH----HhcCCEEEEecCCcCCccc--------ccC-------CCCCccEEEecCcC-cC
Q 017640          213 VIHHISNMLASILPIEEIVHWS----HDVGAKVLVDACQSVPHMV--------VDV-------QGLDADFLVASSHK-MC  272 (368)
Q Consensus       213 ~~~~~~n~tG~~~~l~~i~~l~----~~~g~~li~D~a~~~~~~~--------~~~-------~~~~~d~~~~s~~K-~~  272 (368)
                      |++-.+||||.+++-+.+.+++    ...++.|+.|.+|++.++-        +++       ...+..+...|.|| .|
T Consensus       178 cVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf  257 (425)
T PF12897_consen  178 CVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKITF  257 (425)
T ss_dssp             E-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS-
T ss_pred             eCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEeccccccc
Confidence            7899999999999966555555    3679999999999976651        111       11245688889999 89


Q ss_pred             CCCcceEEEEcccccccCCCcc
Q 017640          273 GPTGIGFLFGKSDLLSAMPPFL  294 (368)
Q Consensus       273 g~~G~G~l~~~~~li~~l~~~~  294 (368)
                      .+.|++++..+++-++.+...+
T Consensus       258 ~GaGva~~aaS~~Nl~~~~~~~  279 (425)
T PF12897_consen  258 PGAGVAFFAASEANLAWIKKHL  279 (425)
T ss_dssp             TTSS-EEEEE-HHHHHHHHHHH
T ss_pred             CCcceeeeecCHHHHHHHHHHh
Confidence            9999999999998887766443

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.47  E-value=3.6e-12  Score=128.98  Aligned_cols=282  Identities=12%  Similarity=0.063  Sum_probs=191.6

Q ss_pred             eEEeccCCCCCC-cHHHHHHHHHHHHHhhcc-CCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHH
Q 017640           68 LVYLDNAATSQK-PIAVLKALQNYYEAYNSN-VHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV  145 (368)
Q Consensus        68 ~i~l~~~~~~~~-~~~v~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~  145 (368)
                      ..|++.+.+... |..+.+.+.+.-..+..+ |+  +...+++..+.+-+.+..++++.|.+-. +--+-.++|.+-+.+
T Consensus        81 ~~fiG~G~y~~~~P~vi~~~i~~~~~~yTaYTPY--QpEisQG~Lqal~e~Qtmi~~LtGm~va-NASl~D~atA~aEA~  157 (954)
T PRK12566         81 TSLIGMGYHGTVTPTVILRNVLENPGWYTAYTPY--QPEIAQGRLEALLNFQQMTIDLTGLDLA-NASLLDEATAAAEAM  157 (954)
T ss_pred             cccccccccCCcCcHHHHHHHHhCchhhhcCCCC--CchhhhHHHHHHHHHHHHHHHHhCchhh-hhhhccchhHHHHHH
Confidence            358888888854 544536665432222222 22  2235677788888999999999999843 334555666655555


Q ss_pred             HHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEccccccccccc
Q 017640          146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASIL  225 (368)
Q Consensus       146 ~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~  225 (368)
                      +++.+.. -.++.++++++..|+.+..-++..++..|.+++.           +++++.+..++..|++.+|+ ..|.+.
T Consensus       158 ~ma~~~~-~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~-----------~~~~~~~~~~~~~v~vq~P~-~~G~i~  224 (954)
T PRK12566        158 ALAKRVA-KSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV-----------DAVDNLAAHAVFGALLQYPD-THGEIR  224 (954)
T ss_pred             HHHHHHh-hcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE-----------cchhhcCCCCEEEEEEECCC-CceEEc
Confidence            5444210 1125689999999999888888888888888874           23444566678888898885 579999


Q ss_pred             CHHHHHHHHHhcCCEEEEecCCc--CCcccccCCCCCccEEEecCcC-----cCCCCcceEEEEcccccccCCCcccCCc
Q 017640          226 PIEEIVHWSHDVGAKVLVDACQS--VPHMVVDVQGLDADFLVASSHK-----MCGPTGIGFLFGKSDLLSAMPPFLGGGE  298 (368)
Q Consensus       226 ~l~~i~~l~~~~g~~li~D~a~~--~~~~~~~~~~~~~d~~~~s~~K-----~~g~~G~G~l~~~~~li~~l~~~~~g~~  298 (368)
                      ++++|.+++|++|.+++ +++.-  ++.+ -...+++.|+++++.+-     .||+++.|++.+++++.+.+...+.|-+
T Consensus       225 d~~~i~~~~h~~gal~~-~~~d~laL~ll-~~Pge~GADI~vG~~Q~fGvp~~~GGP~ag~~a~~~~~~R~~PGRivG~s  302 (954)
T PRK12566        225 DLRPLIDQLHGQQALAC-VAADLLSLLVL-TPPGELGADVVLGSTQRFGVPMGYGGPHAAYFACRDDYKRAMPGRIIGVS  302 (954)
T ss_pred             cHHHHHHHHHHcCCEEE-EEeCHHHHhCC-CChhhcCCcEEeeCCCcCCCCCCCCCCCeeeeeehHHHHhhCCCCcccee
Confidence            99999999999998755 44433  2222 13456899999998775     3666679999999999999887777654


Q ss_pred             ceeecccCC---CCCCCCCCCCCCCCCCHHHHHH---HHHHHH--HHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 017640          299 MISDVFLDH---STFADPPSRFEAGTPAIGEAIG---LGAAID--YLSTIGMQKIHAYEVKWIICSIIVIQERHNTTL  368 (368)
Q Consensus       299 ~~~~~~~~~---~~~~~~~~~~~~gt~~~~~~~a---~~~al~--~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t~  368 (368)
                      ....-...+   ..-.+.+-|.+-.|.|+..--+   +.+++-  ++-..|++.+.+++..++.++.+.|.+ .|+++
T Consensus       303 ~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~-~g~~~  379 (954)
T PRK12566        303 RDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGFYAVYHGPEGLKRIAQRVHRLTAILAAGLEA-KGIKR  379 (954)
T ss_pred             ecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh-cCCcc
Confidence            322111100   1112344677888888874433   333332  444568999999999999999999988 67653

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=99.47  E-value=2.2e-12  Score=115.77  Aligned_cols=175  Identities=23%  Similarity=0.322  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEe--CCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHH-------HHH
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFT--KNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLV-------AQK  180 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t--~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~-------~~~  180 (368)
                      ....+.+.+..|+.||+++  .+|-.  -|+|.||.+++.++    ++|||+++..+..-+-+.......       .+.
T Consensus        53 D~GRd~le~iyA~vfgaE~--ALVRpq~vSGTHAi~~~Lfg~----LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e  126 (403)
T PF06838_consen   53 DIGRDKLERIYADVFGAED--ALVRPQFVSGTHAIALALFGV----LRPGDELLSITGKPYDTLEEVIGIRGNGPGSLKE  126 (403)
T ss_dssp             -HHHHHHHHHHHHHCT-SE--EEEETTS-SHHHHHHHHHHHH------TT-EEEESSSS--CCHHHHHTSSSSSSSSTGG
T ss_pred             CccHHHHHHHHHHHhCchh--hhhcccccchHHHHHHHHHhc----CCCCCeEEEcCCCchhhHHHHhCCCCCCCCChHH
Confidence            3456678889999999984  34422  47789999999999    999999998766544443222211       145


Q ss_pred             cCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccc-cccCHHHHH---HHHHh--cCCEEEEecCCcCCcccc
Q 017640          181 TGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLA-SILPIEEIV---HWSHD--VGAKVLVDACQSVPHMVV  254 (368)
Q Consensus       181 ~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG-~~~~l~~i~---~l~~~--~g~~li~D~a~~~~~~~~  254 (368)
                      .|++...|++.+++.+|.+.+++++++++|+|.+.-...-+- .-+++++|.   +++|+  .++++++|.+|+-.....
T Consensus       127 ~Gi~Y~~v~L~~dg~~D~~~i~~~~~~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~  206 (403)
T PF06838_consen  127 FGIKYREVPLTEDGTIDWEAIKKALKPNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQ  206 (403)
T ss_dssp             GT-EEEE--B-TTSSB-HHHHHHHHHTTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS
T ss_pred             hCceeEEEeecCCCCcCHHHHHHhhccCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceecccc
Confidence            688999999999999999999999999999999877632211 112345544   44554  479999999999666666


Q ss_pred             cCCCCCccEEEecCcCcCC----CCcceEEEEcccccccCC
Q 017640          255 DVQGLDADFLVASSHKMCG----PTGIGFLFGKSDLLSAMP  291 (368)
Q Consensus       255 ~~~~~~~d~~~~s~~K~~g----~~G~G~l~~~~~li~~l~  291 (368)
                      +....+.|++.+|+-|.-|    |. .|+++.++++++...
T Consensus       207 EP~~vGADl~aGSLIKNpGGgiApt-GGYIaGr~~lVe~~a  246 (403)
T PF06838_consen  207 EPTEVGADLMAGSLIKNPGGGIAPT-GGYIAGRKDLVERAA  246 (403)
T ss_dssp             -GGGGT-SEEEEETTSGGGTTT-SS--EEEEESHHHHHHHH
T ss_pred             CccccchhheeccceeCCCCCccCc-CCEEechHHHHHHHH
Confidence            6667899999999999543    44 699999999998755

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]

Probab=99.47  E-value=3.4e-13  Score=120.93  Aligned_cols=157  Identities=19%  Similarity=0.238  Sum_probs=118.9

Q ss_pred             CcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC-----CCCcEEEeCCHHHHHHHHHHHccCCC
Q 017640           79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-----DSGEIVFTKNATEAINLVAYSWGLSN  153 (368)
Q Consensus        79 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-----~~~~v~~t~g~t~a~~~~~~~~~~~~  153 (368)
                      .|..+++...+.+....+  ..|.    +.....++-+|+.+|+++...     .+++|.+|.|++.|+..++..+.   
T Consensus        87 fp~Dai~RA~~~L~~~gG--s~Ga----YS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~---  157 (475)
T KOG0258|consen   87 FPTDAIKRAKRILNDCGG--SLGA----YSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLI---  157 (475)
T ss_pred             CCHHHHHHHHHHHHhcCC--cccc----cccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHh---
Confidence            455555555556655433  1233    333455667888888888544     23499999999999999999883   


Q ss_pred             CCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC--CCCCCHHHHHHhccc-----CceEEEEcccccccccccC
Q 017640          154 LKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSR-----KTKLVVIHHISNMLASILP  226 (368)
Q Consensus       154 ~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~-----~~~~v~~~~~~n~tG~~~~  226 (368)
                      -.+++.|+++-|.|+=.-..    ....|...+..-+++  +|.+|.++|++.+++     +++++++.+|.||||.+.+
T Consensus       158 ~~~~~GvliPiPQYPLYsAt----i~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls  233 (475)
T KOG0258|consen  158 AGKKTGVLIPIPQYPLYSAT----ISLLGGTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLS  233 (475)
T ss_pred             cCCCCceEeecCCCchhHHH----HHHhCCcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhc
Confidence            45788999999988864332    234477776666664  599999999988764     6799999999999999998


Q ss_pred             ---HHHHHHHHHhcCCEEEEecCCc
Q 017640          227 ---IEEIVHWSHDVGAKVLVDACQS  248 (368)
Q Consensus       227 ---l~~i~~l~~~~g~~li~D~a~~  248 (368)
                         +++|..+|+++|+.++.|++|-
T Consensus       234 ~e~ie~i~~fa~~~~l~llaDEVYQ  258 (475)
T KOG0258|consen  234 EENIEGIICFAAEEGLVLLADEVYQ  258 (475)
T ss_pred             HHHHHHHHHHHHHcCeEEechHHHH
Confidence               8899999999999999999964

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=99.46  E-value=1.8e-12  Score=117.56  Aligned_cols=251  Identities=12%  Similarity=0.055  Sum_probs=167.6

Q ss_pred             chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCC----------C-EEEEcCCCCcccH
Q 017640          103 HFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSG----------D-EVILTVAEHHSAI  171 (368)
Q Consensus       103 ~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~g----------d-~vl~~~~~~~s~~  171 (368)
                      +...+.+.-+..++-..+.+..|.+...+-+|++|++-++..++...+.. .-|+          + .+..++.+|+|+.
T Consensus       133 YEiAPvF~lmE~~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk-~~Pe~K~~Gm~~~p~lilFtSeesHYSi~  211 (510)
T KOG0629|consen  133 YEIAPVFVLMEEEVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYK-NFPEVKTKGMFALPPLILFTSEESHYSIK  211 (510)
T ss_pred             EEecceEEeehHHHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhh-cCchhhhhhhhcCCcEEEEecccchhhHH
Confidence            33334444455567777778888876446789998888877777654321 1122          2 4556677888854


Q ss_pred             HHHHHHHHHcC---CEEEEEeCCCCCCCCHHHHHHhccc---C---ceEEEEcccccccccccCHHHHHHHHHhcCCEEE
Q 017640          172 VPWQLVAQKTG---ANLKFLNLNDDESPDLDKLKEMLSR---K---TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVL  242 (368)
Q Consensus       172 ~~~~~~~~~~g---~~v~~v~~~~~~~~d~~~l~~~l~~---~---~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li  242 (368)
                      .    .+...|   -.++.|+.++.|.+++++||++|..   +   |-+|..+..++.-|...|++.|+++|++|++|++
T Consensus       212 k----aAa~lg~gtd~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmH  287 (510)
T KOG0629|consen  212 K----AAAFLGLGTDHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKLWMH  287 (510)
T ss_pred             H----HHHHhccCCceeEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCEEEE
Confidence            4    344445   4789999999999999999999853   2   6788999999999999999999999999999999


Q ss_pred             EecCCcCCccccc------CC-CCCccEEEecCcCcCC-CCcceEEEEccc-ccccCCCcccCCcceeecccCC----CC
Q 017640          243 VDACQSVPHMVVD------VQ-GLDADFLVASSHKMCG-PTGIGFLFGKSD-LLSAMPPFLGGGEMISDVFLDH----ST  309 (368)
Q Consensus       243 ~D~a~~~~~~~~~------~~-~~~~d~~~~s~~K~~g-~~G~G~l~~~~~-li~~l~~~~~g~~~~~~~~~~~----~~  309 (368)
                      +|+|.+-|.+ ++      +. -...+.++.+.||+.| |--|+.++.+.+ ++..+.....     .+++...    ..
T Consensus       288 vDAAwGGglL-mS~k~R~kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~gll~~Cn~~~A-----~YLFq~dK~YdvS  361 (510)
T KOG0629|consen  288 VDAAWGGGLL-MSRKHRHKLTGIERANSVTWNPHKLMGAPLQCSAFLTREEGLLQRCNQMSA-----IYLFQQDKFYDVS  361 (510)
T ss_pred             eecccccccc-cChhhHhhccCccccCceeecHHHhhcCcchhhHHHHHHHHHHHhhcccch-----hhhhccCceeecc
Confidence            9999986554 11      11 1257899999999887 444888888775 3444332221     1222111    11


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          310 FADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       310 ~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      +.......+.|...-  +.-+....+.....|.++-.+++.++++|+.++|++..++
T Consensus       362 ~DTgdK~iQCGRh~D--~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~  416 (510)
T KOG0629|consen  362 YDTGDKAIQCGRHVD--VFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGF  416 (510)
T ss_pred             cccccchhhcCcccc--HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            222223333332111  1122223333334488899999999999999999998774

>PRK06148 hypothetical protein; Provisional

Probab=99.45  E-value=1.4e-11  Score=129.34  Aligned_cols=262  Identities=15%  Similarity=0.155  Sum_probs=168.7

Q ss_pred             CCeEEeccC----CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHH
Q 017640           66 KKLVYLDNA----ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEA  141 (368)
Q Consensus        66 ~~~i~l~~~----~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a  141 (368)
                      ++.-|+|..    ..|+..|.|.+++.+.+..+..+.  . +     ..+...++.+.|++.+..+- +.+.|++|+++|
T Consensus       622 dG~~ylD~~~g~~~lGH~hp~v~~Ai~~q~~~l~~~~--~-~-----~~~~~~~lAe~L~~~~p~~~-~~v~f~nSGsEA  692 (1013)
T PRK06148        622 RGRAYLDCFNNVCHVGHAHPRVVAAAARQAARLNTNT--R-Y-----LHDAIVAYAERLTATLPDGL-TVAFFVNSGSEA  692 (1013)
T ss_pred             CCCEEEEcccChhhcCCCCHHHHHHHHHHHhhcCCcC--C-c-----CCHHHHHHHHHHHHhCCCCc-CEEEEeCCcHHH
Confidence            455677763    466889999999999988753221  1 1     13344567788888775332 378999999999


Q ss_pred             HHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHH-----HcC----CEEEEEeCCCC----CC-CC-------HHH
Q 017640          142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQ-----KTG----ANLKFLNLNDD----ES-PD-------LDK  200 (368)
Q Consensus       142 ~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~-----~~g----~~v~~v~~~~~----~~-~d-------~~~  200 (368)
                      ++.+++..+.  ...+..|+....+||+.......+..     ..+    ..+..++....    +. .+       .+.
T Consensus       693 ~e~AlklAr~--~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  770 (1013)
T PRK06148        693 NSLALRLARA--HTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAES  770 (1013)
T ss_pred             HHHHHHHHHH--hcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHH
Confidence            9999997632  34456788889999886543222110     001    01212221100    10 01       134


Q ss_pred             HHHhcc------cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCccc-----ccCCCCCccEE
Q 017640          201 LKEMLS------RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV-----VDVQGLDADFL  264 (368)
Q Consensus       201 l~~~l~------~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~~-----~~~~~~~~d~~  264 (368)
                      +++.+.      .++.+|+++......|.+.|    ++++.++|++||+++|+||++. +|..-     .+.....+|++
T Consensus       771 l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDiv  850 (1013)
T PRK06148        771 VAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIV  850 (1013)
T ss_pred             HHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCccee
Confidence            554443      35789999999988898887    9999999999999999999985 54331     22233468998


Q ss_pred             EecCcCcCC-CCcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHH
Q 017640          265 VASSHKMCG-PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQ  343 (368)
Q Consensus       265 ~~s~~K~~g-~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~  343 (368)
                      +.+  |.+| +..+|.+++++++.+.+.+...                    .+.....|..+.++..+.++.+++.   
T Consensus       851 t~g--K~lggG~Plgav~~~~ei~~~~~~g~~--------------------~~~Tf~gnpla~aaa~a~L~~i~~e---  905 (1013)
T PRK06148        851 TMG--KPIGNGHPMGAVVTTREIADSFDNGME--------------------YFNTFGGNPVSCAIGLAVLDIIEDE---  905 (1013)
T ss_pred             eec--ccccCCcceEEEEEcHHHHhhccCCCc--------------------cccCCCCCHHHHHHHHHHHHHHhhc---
Confidence            875  9655 3338999999988776543110                    0111145667777777888888764   


Q ss_pred             HHHHHHHHHHHHHHHHHHhh
Q 017640          344 KIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       344 ~i~~~~~~l~~~l~~~l~~~  363 (368)
                      .+.+++.++.+++.+.|+++
T Consensus       906 ~l~~~~~~~G~~l~~~L~~l  925 (1013)
T PRK06148        906 DLQRNALEIGNYLLAGLREL  925 (1013)
T ss_pred             cHHHHHHHHHHHHHHHHHHH
Confidence            45666777777777776654

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.44  E-value=5.5e-11  Score=115.02  Aligned_cols=263  Identities=14%  Similarity=0.106  Sum_probs=161.5

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCC-CCcE-EEeCC
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD-SGEI-VFTKN  137 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~-~~~v-~~t~g  137 (368)
                      ++--|+|..+      .|+.+|.+.+++++.+...... + ...    ...+...++.+.|++.+.... ...+ +++++
T Consensus        56 dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~~~~~-~-~~~----~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~S  129 (459)
T PRK06931         56 EGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGLPL-H-TLD----LTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPS  129 (459)
T ss_pred             CCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhhccc-c-ccc----cCCHHHHHHHHHHHHhCCCccccceEEEeCCC
Confidence            3456777732      4678999999999988752111 0 000    113444467777888775321 1134 55689


Q ss_pred             HHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHc---------CCEEEEEeCCCCCC--------CCHHH
Q 017640          138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKT---------GANLKFLNLNDDES--------PDLDK  200 (368)
Q Consensus       138 ~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~---------g~~v~~v~~~~~~~--------~d~~~  200 (368)
                      +++|++.+++..+.  ...++.|+.....||+.......+....         ...+..++......        -+.+.
T Consensus       130 GsEAve~AlklAr~--~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (459)
T PRK06931        130 GADAVEAAIKLAKT--YTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKA  207 (459)
T ss_pred             cHHHHHHHHHHHHH--hcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHH
Confidence            99999999987532  3456689999999998765544332110         01233344321110        02222


Q ss_pred             H----HHhcc------cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCc
Q 017640          201 L----KEMLS------RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDA  261 (368)
Q Consensus       201 l----~~~l~------~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~  261 (368)
                      +    ++.+.      +++.+|+++.++...|.+.|    +++|.++|++||+++|+||++. +|..    ..+.....+
T Consensus       208 ~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~P  287 (459)
T PRK06931        208 LTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEP  287 (459)
T ss_pred             HHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCCCC
Confidence            2    33332      24789999999988888876    8999999999999999999976 4432    112233469


Q ss_pred             cEEEecCcCcCCC-CcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 017640          262 DFLVASSHKMCGP-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI  340 (368)
Q Consensus       262 d~~~~s~~K~~g~-~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~  340 (368)
                      |+++.+  |.+|. ..+|.+..++++ +.+.+...++                     ....|..+.++..+.++.+++.
T Consensus       288 Divt~g--K~l~gG~Pi~av~~~~~~-~~~~~~~~~~---------------------T~~gnpla~aaala~L~~l~~~  343 (459)
T PRK06931        288 DIIVMS--KAVGGGLPLAVLGIKKEF-DAWQPGGHTG---------------------TFRGNQLAMATGLTTLKILKEE  343 (459)
T ss_pred             CEEEec--ccccCCcceeeeeeHHHH-hhccCCCCCC---------------------CCCCCHHHHHHHHHHHHHHHhC
Confidence            999886  95542 237778877763 4443222111                     1145667777788888888764


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHhh
Q 017640          341 GMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       341 g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +   +.++.+++.+++.+.|+++
T Consensus       344 ~---l~~~~~~~G~~l~~~L~~l  363 (459)
T PRK06931        344 N---LAQNAAERGEWLKAQLAEL  363 (459)
T ss_pred             C---HHHHHHHHHHHHHHHHHHH
Confidence            3   4566666666666666543

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.44  E-value=6.8e-12  Score=113.14  Aligned_cols=262  Identities=13%  Similarity=0.093  Sum_probs=162.7

Q ss_pred             EEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc-CCCCC----CcE--EEeCCHHHH
Q 017640           69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI-NASDS----GEI--VFTKNATEA  141 (368)
Q Consensus        69 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~-~~~~~----~~v--~~t~g~t~a  141 (368)
                      +|-|..+-.+.-+.|.++-.+......        ..++-..+...+.++.+++++ |.+.+    +.+  +-|.|+|.|
T Consensus        35 vY~de~Gk~pvl~aV~~Ae~~l~~~~~--------~k~Yl~i~G~~~f~~~~~~llFG~d~~~l~~~Rv~t~Qt~GGTGA  106 (396)
T COG1448          35 VYKDEDGKTPVLRAVKKAEKRLLEQEK--------TKNYLPIEGLPEFLEAVQKLLFGADSPALAEDRVATVQTLGGTGA  106 (396)
T ss_pred             eeeCCCCCcchhHHHHHHHHHhhcccc--------ccccCCcCCcHHHHHHHHHHhcCCCcHHHHhhhHhheecCCcchH
Confidence            344444445566666666554443321        111122344556666677664 54311    122  577899999


Q ss_pred             HHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC--CCCCCCHHHHHHhccc---CceEEEEcc
Q 017640          142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDESPDLDKLKEMLSR---KTKLVVIHH  216 (368)
Q Consensus       142 ~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~l~~---~~~~v~~~~  216 (368)
                      +.....-+.  ...+...|++++|.++.+.    .+.+..|.++...|.-  ++..+|.+.+.+.|.+   +..++.-..
T Consensus       107 L~~~A~fl~--~~~~~~~vwis~PtW~NH~----~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~~~~vvLLH~C  180 (396)
T COG1448         107 LRVAADFLA--RFFPDATVWISDPTWPNHK----AIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTAPEGSVVLLHGC  180 (396)
T ss_pred             HHHHHHHHH--HhCCCceEEeCCCCcHhHH----HHHHhcCCceeeeeccccccccccHHHHHHHHHhCCCCCEEEEecC
Confidence            999998874  3667778999999777644    4445569999888864  3456899888887754   445666777


Q ss_pred             cccccccccC---HHHHHHHHHhcCCEEEEecCCc-CCcccccCCC---------CCccEEEecCcCcCCCCc--ceEEE
Q 017640          217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQS-VPHMVVDVQG---------LDADFLVASSHKMCGPTG--IGFLF  281 (368)
Q Consensus       217 ~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~-~~~~~~~~~~---------~~~d~~~~s~~K~~g~~G--~G~l~  281 (368)
                      +|||||.-.+   +++|.++.+++|.+.++|-||- ++.- ++-+.         ...-+++.|+||.||..|  +|.+.
T Consensus       181 cHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~G-leeDa~~lR~~a~~~~~~lva~S~SKnfgLYgERVGa~~  259 (396)
T COG1448         181 CHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADG-LEEDAYALRLFAEVGPELLVASSFSKNFGLYGERVGALS  259 (396)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccc-hHHHHHHHHHHHHhCCcEEEEehhhhhhhhhhhccceeE
Confidence            8999999998   7788889999999999999964 3322 22211         123678889999999888  55543


Q ss_pred             -Ecc--cccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH------HHHHhCHHHHHHHHHHH
Q 017640          282 -GKS--DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAID------YLSTIGMQKIHAYEVKW  352 (368)
Q Consensus       282 -~~~--~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~------~~~~~g~~~i~~~~~~l  352 (368)
                       +.+  +....+.....      ..           -|-...+|+..+..-...-|.      .++. .+..+++|+.++
T Consensus       260 vva~~~~~a~~v~sqlk------~~-----------iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~-El~~Mr~Ri~~m  321 (396)
T COG1448         260 VVAEDAEEADRVLSQLK------AI-----------IRTNYSNPPAHGAAVVATILNNPELRAEWEQ-ELEEMRQRILEM  321 (396)
T ss_pred             EEeCCHHHHHHHHHHHH------HH-----------HHhccCCCchhhHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHH
Confidence             322  22222221110      00           011112444443333333222      1222 478999999999


Q ss_pred             HHHHHHHHHhh
Q 017640          353 IICSIIVIQER  363 (368)
Q Consensus       353 ~~~l~~~l~~~  363 (368)
                      +..+.+.|++.
T Consensus       322 R~~lv~~L~~~  332 (396)
T COG1448         322 RQALVDALKAL  332 (396)
T ss_pred             HHHHHHHHHhh
Confidence            99999999873

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.43  E-value=2.4e-11  Score=116.63  Aligned_cols=268  Identities=9%  Similarity=-0.014  Sum_probs=163.2

Q ss_pred             eEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHH
Q 017640           68 LVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEA  141 (368)
Q Consensus        68 ~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a  141 (368)
                      .-|+|..      ..|..+|.+.+++.+.+.++......+  .    ..+...++.+.++++++..- +.+.|++++++|
T Consensus        45 ~~ylD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~~~--~----~~~~~~~la~~l~~~~~~~~-~~v~f~~sGseA  117 (427)
T TIGR00508        45 RRLIDGMSSWWAAIHGYNHPRLNAAAQKQIDKMSHVMFGG--F----THKPAIELCQKLVKMTPNAL-DCVFLADSGSVA  117 (427)
T ss_pred             CEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCccccc--c----CCHHHHHHHHHHHhhCCCCC-CEEEEeCCcHHH
Confidence            3466654      346789999999999988642111100  1    12233467777888775432 389999999999


Q ss_pred             HHHHHHHccCCC----CCCCCEEEEcCCCCcccHHHHHHHHHH-------cC---CEEEEEeCCCC-C-----CCCHHHH
Q 017640          142 INLVAYSWGLSN----LKSGDEVILTVAEHHSAIVPWQLVAQK-------TG---ANLKFLNLNDD-E-----SPDLDKL  201 (368)
Q Consensus       142 ~~~~~~~~~~~~----~~~gd~vl~~~~~~~s~~~~~~~~~~~-------~g---~~v~~v~~~~~-~-----~~d~~~l  201 (368)
                      ++.+++......    ...+..|+..+..|++.......+...       .+   ..+..++.... .     .-|++++
T Consensus       118 ~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l  197 (427)
T TIGR00508       118 VEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNRFDEEWNEEAITPL  197 (427)
T ss_pred             HHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCCccccchhHHHHHHHH
Confidence            999988642110    012457999999999865433322110       00   01112221100 0     0145667


Q ss_pred             HHhcc---cCceEEEEccc-ccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEEecC
Q 017640          202 KEMLS---RKTKLVVIHHI-SNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASS  268 (368)
Q Consensus       202 ~~~l~---~~~~~v~~~~~-~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s~  268 (368)
                      ++.+.   ++.++|+++.. +...|...+    +++|.++|++||+++|+||+|. +|..    ..+.....+|+++  +
T Consensus       198 ~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v~pDi~~--~  275 (427)
T TIGR00508       198 AKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGVVPDILC--V  275 (427)
T ss_pred             HHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCCCCCEEE--e
Confidence            77764   35688889986 666676554    8999999999999999999984 3221    1122234688887  5


Q ss_pred             cCcCCCC--cceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHH
Q 017640          269 HKMCGPT--GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIH  346 (368)
Q Consensus       269 ~K~~g~~--G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~  346 (368)
                      +|.++..  .++.++.++++.+.+.....+...                .......+..+.++..++++.+.+.   .+.
T Consensus       276 gK~l~gG~~p~~a~~~~~~~~~~~~~~~~~~~~----------------~~~T~~g~p~~~aaa~a~l~~l~~~---~~~  336 (427)
T TIGR00508       276 GKALTGGYMTLSATVTTDKVAQTISSGEAGCFM----------------HGPTFMGNPLACAVAEASLAILLEG---EWQ  336 (427)
T ss_pred             chhhhcCcccceEEEEcHHHHHHHhcCCCCccc----------------cCCCCCcCHHHHHHHHHHHHHHHhC---CHH
Confidence            7966421  268888888887766532110000                0001134667777788888888764   346


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 017640          347 AYEVKWIICSIIVIQER  363 (368)
Q Consensus       347 ~~~~~l~~~l~~~l~~~  363 (368)
                      ++.+++.+++.+.|+++
T Consensus       337 ~~~~~~~~~l~~~L~~l  353 (427)
T TIGR00508       337 KQVSAIENQLKRELSPL  353 (427)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            78888888888877664

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PRK06149 hypothetical protein; Provisional

Probab=99.43  E-value=4.5e-11  Score=125.51  Aligned_cols=261  Identities=13%  Similarity=0.084  Sum_probs=164.9

Q ss_pred             CeEEeccCC----CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHH
Q 017640           67 KLVYLDNAA----TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI  142 (368)
Q Consensus        67 ~~i~l~~~~----~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~  142 (368)
                      +.-|+|..+    .|+.+|.|.+++.+.+.....+.   ..     ..+...++.++|++++.... +.++|++|+++|+
T Consensus       584 G~~ylD~~~~~~~lGh~hp~v~~Ai~~q~~~l~~~~---~~-----~~~~~~elae~L~~~~p~~~-~~v~f~~SGsEA~  654 (972)
T PRK06149        584 GRSYLDMVNNVTVLGHGHPRLAAAAARQWSLLNTNS---RF-----HYAAVAEFSERLAALAPDGL-DTVFLVNSGSEAN  654 (972)
T ss_pred             CCEEEECCCCccccCCCCHHHHHHHHHHHHhccccc---cc-----cCHHHHHHHHHHHHhCCCCc-CEEEEeCCchHHH
Confidence            344666532    45679999999999887653221   11     12445578888988884332 3899999999999


Q ss_pred             HHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHH----cC---C---EEEEEeCCCC----CC-CC-----HHHHH
Q 017640          143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK----TG---A---NLKFLNLNDD----ES-PD-----LDKLK  202 (368)
Q Consensus       143 ~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~----~g---~---~v~~v~~~~~----~~-~d-----~~~l~  202 (368)
                      +.+++..+.  ...+..|+.....||+.......+...    .+   .   .+..++....    +. .+     .++++
T Consensus       655 e~AlklAr~--~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~  732 (972)
T PRK06149        655 DLAIRLAWA--ASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVV  732 (972)
T ss_pred             HHHHHHHHH--hcCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHH
Confidence            999985421  234567888888888654322111100    00   0   1222322111    10 11     23444


Q ss_pred             Hhcc------cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCC-cCCccc-----ccCCCCCccEEEe
Q 017640          203 EMLS------RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQ-SVPHMV-----VDVQGLDADFLVA  266 (368)
Q Consensus       203 ~~l~------~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~-~~~~~~-----~~~~~~~~d~~~~  266 (368)
                      +.++      .++.+|+++......|.+.|    +++|.++|++||+++|+||++ ++|..-     .+.....+|+++.
T Consensus       733 ~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt~  812 (972)
T PRK06149        733 AQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDIITM  812 (972)
T ss_pred             HHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEEEe
Confidence            3332      35789999999998998888    999999999999999999998 455432     1112346898865


Q ss_pred             cCcCcCCC-CcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 017640          267 SSHKMCGP-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI  345 (368)
Q Consensus       267 s~~K~~g~-~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i  345 (368)
                        +|.+|. ..+|.+++++++.+.+.+.  +.                  .+...+.|..+.++..+.++.+++.   .+
T Consensus       813 --gK~lg~G~Pl~av~~~~~i~~~~~~~--~~------------------~~sT~~gnP~~~aaala~L~~i~~e---~l  867 (972)
T PRK06149        813 --AKGMGNGHPLGAVITRREIAEALEAE--GY------------------FFSSTGGSPVSCRIGMAVLDVLREE---KL  867 (972)
T ss_pred             --cccccCCeeeEEEEEcHHHHhhhccC--Cc------------------ccCCCCCCHHHHHHHHHHHHHHHhc---CH
Confidence              596653 2389999999987766531  10                  0111245666777777888888764   45


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 017640          346 HAYEVKWIICSIIVIQER  363 (368)
Q Consensus       346 ~~~~~~l~~~l~~~l~~~  363 (368)
                      .++.+++.+++.+.|+++
T Consensus       868 ~~~~~~~G~~l~~~L~~l  885 (972)
T PRK06149        868 QENARRVGDHLKARLEAL  885 (972)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            667777777777777654

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=99.41  E-value=7.9e-11  Score=113.29  Aligned_cols=257  Identities=9%  Similarity=0.015  Sum_probs=148.3

Q ss_pred             CCCCcHHHH--HHHHHHHHHhhc-cCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCC
Q 017640           76 TSQKPIAVL--KALQNYYEAYNS-NVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLS  152 (368)
Q Consensus        76 ~~~~~~~v~--~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~  152 (368)
                      .|+..|.+.  +++++.+..... .+.. ....    .+...++.+.|+++...+.-+.+.|++++++|++.+++..+..
T Consensus        52 lGh~~p~v~~~~ai~~q~~~~~~~~~~~-~~~~----~~~~~~l~~~l~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~  126 (431)
T TIGR03251        52 LGMNHPALVDDLAFRARLGAAAVNKPSN-SDVY----TVAMARFVDTFARVLGDPALPHLFFIEGGALAVENALKTAFDW  126 (431)
T ss_pred             CCCCChhhhHHHHHHHHHHHhhhccccc-CCCC----CHHHHHHHHHHHHhcCCCCcCEEEEeCCcHHHHHHHHHHHHHH
Confidence            567788998  899888876421 1111 0111    2233355566666653222248899999999999999876321


Q ss_pred             C-----C-C----CCCEEEEcCCCCcccHHHHHHHHHHcCCEEEE--------E--e-----CCCCC-C-------CCHH
Q 017640          153 N-----L-K----SGDEVILTVAEHHSAIVPWQLVAQKTGANLKF--------L--N-----LNDDE-S-------PDLD  199 (368)
Q Consensus       153 ~-----~-~----~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~--------v--~-----~~~~~-~-------~d~~  199 (368)
                      .     . .    .+.+|+....+||+...............-.+        +  |     .+.+. .       -+++
T Consensus       127 t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~  206 (431)
T TIGR03251       127 KSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPNLDQVIALEEEALR  206 (431)
T ss_pred             hhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCCCcccCCccccccchhhHHHHHHHH
Confidence            0     0 0    14689999999998765433332110000000        1  1     00000 0       1244


Q ss_pred             HHHHhcc---cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEEec
Q 017640          200 KLKEMLS---RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVAS  267 (368)
Q Consensus       200 ~l~~~l~---~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s  267 (368)
                      ++++.+.   .++.+|+++..+...|.+.|    +++|.++|++||+++|+||+++ +|..    ..+.....+|+++.+
T Consensus       207 ~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~~~g  286 (431)
T TIGR03251       207 QARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVAFG  286 (431)
T ss_pred             HHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCCCCCEEEec
Confidence            4555553   47899999999999998875    8999999999999999999988 5443    222334469999864


Q ss_pred             CcCcCCCCcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCH-HHHH
Q 017640          268 SHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGM-QKIH  346 (368)
Q Consensus       268 ~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~-~~i~  346 (368)
                        |.+  +.+|++.. +++.+...... ++..               .....-+.+..+.++..++++.+.+.++ ++++
T Consensus       287 --K~~--~~~g~~~~-~~i~~~~~~~~-~~~~---------------~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~  345 (431)
T TIGR03251       287 --KKT--QVCGIMAG-RRVDEVADNVF-AVPS---------------RLNSTWGGNLVDMVRATRILEIIEEERLVDNAR  345 (431)
T ss_pred             --ccC--ccceEEec-chHHHhhhhcc-cCcc---------------ccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence              754  33455543 33211111000 0000               0011114567788888899998887653 3555


Q ss_pred             HHHHHHHHHHHH
Q 017640          347 AYEVKWIICSII  358 (368)
Q Consensus       347 ~~~~~l~~~l~~  358 (368)
                      +....+.+.+.+
T Consensus       346 ~~g~~l~~~L~~  357 (431)
T TIGR03251       346 VQGAHLLARLHE  357 (431)
T ss_pred             HHHHHHHHHHHH
Confidence            555555555544

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.41  E-value=4.2e-11  Score=108.59  Aligned_cols=215  Identities=17%  Similarity=0.125  Sum_probs=146.8

Q ss_pred             eEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHH
Q 017640           68 LVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEA  141 (368)
Q Consensus        68 ~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a  141 (368)
                      .=|+|..      ..++..|++.+++.+.+..+...       .+..+....-++.+.+.+.++....+.|.|.+++|+|
T Consensus        56 ~EyiD~~ssw~~~~~Ghanpev~ral~~q~~k~~hs-------~~~~~t~eav~l~~~l~~~~~~~~~~rvff~nsGTeA  128 (433)
T KOG1401|consen   56 KEYIDFTSSWAVTILGHANPEVARALAEQAKKLGHS-------SNGYFTLEAVELEEVLSAVLGKGSAERVFFCNSGTEA  128 (433)
T ss_pred             ceeeeeccceeccccCCCCHHHHHHHHHHHhhheec-------cCccccHHHHHHHHHHHhcccCCCccEEEEecCCcHH
Confidence            3466654      35677899999998888875322       2222222244688888888877766799999999999


Q ss_pred             HHHHHHHccCCCCC--C--CCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC---CC----CCCCHHHHHHhcccC--
Q 017640          142 INLVAYSWGLSNLK--S--GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN---DD----ESPDLDKLKEMLSRK--  208 (368)
Q Consensus       142 ~~~~~~~~~~~~~~--~--gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~---~~----~~~d~~~l~~~l~~~--  208 (368)
                      ++.++...++-...  +  ...++....+||+-...+...+   +......+.+   ++    ..-|+.++++.++.+  
T Consensus       129 ne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~---~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~~  205 (433)
T KOG1401|consen  129 NETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVT---GNSKYGLPFDPIAPDVVTAEYNDSTALEKLFESHKG  205 (433)
T ss_pred             HHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhh---cccccCCCCCCCCCceeecccCCHHHHHHHHHhCCC
Confidence            99999875321111  1  1248888999998766555544   2222222221   22    112788999988764  


Q ss_pred             -ceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcccc----cCCCCCccEEEecCcCcCC-CCcc
Q 017640          209 -TKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMVV----DVQGLDADFLVASSHKMCG-PTGI  277 (368)
Q Consensus       209 -~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~~~----~~~~~~~d~~~~s~~K~~g-~~G~  277 (368)
                       +.+|+++..+...|.+..    +..|.++|+++|+++|.||++. ++....    ..-...+|+.+..  |.+| +-.+
T Consensus       206 ~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~~PDI~t~a--K~L~gGlPi  283 (433)
T KOG1401|consen  206 EIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFGVTPDITTVA--KPLGGGLPI  283 (433)
T ss_pred             ceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhCcCCcceeeh--hhccCCcee
Confidence             489999999988887765    7899999999999999999987 233311    1112358888776  9554 3349


Q ss_pred             eEEEEcccccccCCCcc
Q 017640          278 GFLFGKSDLLSAMPPFL  294 (368)
Q Consensus       278 G~l~~~~~li~~l~~~~  294 (368)
                      |...+++++.+.+.|--
T Consensus       284 gA~~v~~kV~~~i~~~~  300 (433)
T KOG1401|consen  284 GATGVRDKVAEMISPGD  300 (433)
T ss_pred             EEEeehHHHHhhcCCCC
Confidence            99999999988877543

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=99.41  E-value=7.9e-11  Score=113.26  Aligned_cols=263  Identities=11%  Similarity=0.085  Sum_probs=151.7

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHH--HHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCC
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNY--YEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKN  137 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g  137 (368)
                      ++..|+|..+      .|+.++.+.+++++.  ...+. +..  . .......+..+.+.+.+++++..+- +.|+|++|
T Consensus        56 dG~~ylD~~sg~~~~~lGh~~p~i~~Ai~~q~~~~~l~-~~~--~-~~~~~~~~la~~l~~~l~~~~p~~~-~~v~f~~S  130 (464)
T TIGR00699        56 DGNRLLDLYSQISSIPIGYNNPALLKAAQSPEMATTLI-NRP--A-LGNFPSKDWAKILKEGILKVAPKGQ-DQVWTGMS  130 (464)
T ss_pred             CCCEEEEccCCHhhhcCCCCCHHHHHHHHHHHHHHhhc-ccc--c-CCcHHHHHHHHHHHHhHHhhCCCCc-CEEEEeCC
Confidence            4556888754      467899999999874  22221 111  1 1111122333333333445554222 38999999


Q ss_pred             HHHHHHHHHHHccCCC------C----------------CC---CCEEEEcCCCCcccHHHHHHHHHHc-----C---CE
Q 017640          138 ATEAINLVAYSWGLSN------L----------------KS---GDEVILTVAEHHSAIVPWQLVAQKT-----G---AN  184 (368)
Q Consensus       138 ~t~a~~~~~~~~~~~~------~----------------~~---gd~vl~~~~~~~s~~~~~~~~~~~~-----g---~~  184 (368)
                      +++|++.+++......      .                .+   +..|+....+||+.......+....     +   ..
T Consensus       131 GsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~  210 (464)
T TIGR00699       131 GSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFD  210 (464)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCC
Confidence            9999999998752110      0                01   2279999999998765444332110     1   01


Q ss_pred             EEEEeCCC-C---C----------CCCHHHHHHhcc---cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEE
Q 017640          185 LKFLNLND-D---E----------SPDLDKLKEMLS---RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLV  243 (368)
Q Consensus       185 v~~v~~~~-~---~----------~~d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~  243 (368)
                      +..+|... .   .          .-+++.+++.+.   .++.+|+++......|.+.|    +++|.++|++||+++|+
T Consensus       211 ~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~  290 (464)
T TIGR00699       211 WPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIV  290 (464)
T ss_pred             ceecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence            11222210 0   0          013556777774   35799999999999999987    99999999999999999


Q ss_pred             ecCCc-CCcc----cccCCCC--CccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCC
Q 017640          244 DACQS-VPHM----VVDVQGL--DADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSR  316 (368)
Q Consensus       244 D~a~~-~~~~----~~~~~~~--~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~  316 (368)
                      ||++. +|..    ..+....  .+|+++.+  |.+|..|  +++.+ +.+....+...                     
T Consensus       291 DEV~tGfGrtG~~fa~e~~gv~~~PDi~t~g--K~lg~gG--~~~~~-~~~~~~~~~~~---------------------  344 (464)
T TIGR00699       291 DEVQTGVGATGKFWAHEHWNLDDPPDMVTFS--KKFQTAG--YFFHD-PAFRPNKPYRQ---------------------  344 (464)
T ss_pred             eeeeeCCCCCcchhHHHhcCCCCCCCEEEeh--hhhccCC--ccccc-hhccCCCCccc---------------------
Confidence            99985 3321    1111122  38997775  9775433  33332 22111111111                     


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHh
Q 017640          317 FEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       317 ~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~  362 (368)
                      +.....|..+.++..++++.+.+.   .+.+++.++.+++.+.|++
T Consensus       345 ~~T~~gnp~~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~  387 (464)
T TIGR00699       345 FNTWMGDPSRALILREIIQEIKRK---DLLENVAHVGDYLYTGLED  387 (464)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHH
Confidence            112246666777777888888764   3455565555566555544

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=99.40  E-value=4.9e-11  Score=114.71  Aligned_cols=257  Identities=12%  Similarity=0.037  Sum_probs=149.7

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++--|+|..      ..|+..|.+.+++.+.++.....   . +     ..+...++.+.|++.+...  +.+.|+++++
T Consensus        46 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~---~-~-----~~~~~~~la~~l~~~~p~~--~~v~f~~sGs  114 (431)
T PRK06209         46 DGNEYIEYGMGLRAVGLGHAYPPVVEAVREALQDGCNF---T-R-----PSAIELDAAESFLELIDGA--DMVKFCKNGS  114 (431)
T ss_pred             CCCEEEEccccccchhcCCCCHHHHHHHHHHHHhCcCC---C-C-----CCHHHHHHHHHHHHhCCcc--ceEEEecCHH
Confidence            344577763      35678999999999998864211   0 0     1222235677788877422  3899999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEc-CCCCcccHHHHHHHH-HHcCC------EEEEEeCCCCCCCCHHHHHHhcc---cC
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILT-VAEHHSAIVPWQLVA-QKTGA------NLKFLNLNDDESPDLDKLKEMLS---RK  208 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~-~~~~~s~~~~~~~~~-~~~g~------~v~~v~~~~~~~~d~~~l~~~l~---~~  208 (368)
                      +|++.+++..+.  ...+..|+.. ...|++....+.... ...+.      .+..++.+     |++++++.++   .+
T Consensus       115 eA~e~AlklAr~--~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~~~  187 (431)
T PRK06209        115 DATSAAVRLARA--YTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTFRYN-----DIASLEALFEDHPGR  187 (431)
T ss_pred             HHHHHHHHHHHH--HhCCCeEEEeccCccccccccccccCCCCCCCChhHhccccccCCC-----CHHHHHHHHHhCCCC
Confidence            999999996532  2233455554 334433111110000 00010      01122222     7899998885   25


Q ss_pred             ceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccc--cC---CCCCccEEEecCcCcCCC-CcceEEEE
Q 017640          209 TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVV--DV---QGLDADFLVASSHKMCGP-TGIGFLFG  282 (368)
Q Consensus       209 ~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~--~~---~~~~~d~~~~s~~K~~g~-~G~G~l~~  282 (368)
                      +.+|+++......+-.-.+++|.++|++||+++|+||++. |....  -.   ....+|+++  ++|.+|. ..+|.+++
T Consensus       188 ~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~t-G~~~~~~g~~~~~gv~PDi~t--~gK~lggG~p~~av~~  264 (431)
T PRK06209        188 IACVILEPATADEPQDGFLHEVRRLCHENGALFILDEMIT-GFRWHMRGAQKLYGIVPDLSC--FGKALGNGFAVSALAG  264 (431)
T ss_pred             EEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEcccc-cCCcCcchhhHHhCCCcceee--ehhhhcCCcccEEEEE
Confidence            6788888764432222228999999999999999999984 33210  01   123578755  4697653 22788889


Q ss_pred             ccccccc--CCCcccCCcceeecccCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 017640          283 KSDLLSA--MPPFLGGGEMISDVFLDHSTFADPPSRF-EAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIV  359 (368)
Q Consensus       283 ~~~li~~--l~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~  359 (368)
                      ++++++.  +.....+..                ..+ ..-+++....+++.++++.+++.+   +.+++.++.+++.+.
T Consensus       265 ~~~i~~~~~~~~~~~~~~----------------~~~~~T~~~np~~~aaa~a~l~~i~~~~---~~~~~~~~g~~l~~~  325 (431)
T PRK06209        265 KREYMELGGLEHTDRERV----------------FLLSTTHGAETHALAAAIATMAIYRDED---VIERLHEQGAKLAAG  325 (431)
T ss_pred             HHHHHhhhcccccCCCCc----------------eeeccCCCCCHHHHHHHHHHHHHHhccC---HHHHHHHHHHHHHHH
Confidence            9888764  211100000                000 012466778888889999998754   455555555665555


Q ss_pred             HHh
Q 017640          360 IQE  362 (368)
Q Consensus       360 l~~  362 (368)
                      |++
T Consensus       326 L~~  328 (431)
T PRK06209        326 VNE  328 (431)
T ss_pred             HHH
Confidence            543

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=99.36  E-value=1.7e-11  Score=114.79  Aligned_cols=270  Identities=11%  Similarity=0.077  Sum_probs=170.4

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|||..+      .|...+.+.+++.+.+..+.-...     .+....+ ..++.++|+++.....=+.|+|++|++
T Consensus        42 ~G~r~lDg~sg~W~~~~Gh~~~~i~~Ai~~Q~~~l~~~~~-----~~~t~~P-a~~LA~~L~~~aP~~~l~~vFf~~sGS  115 (449)
T COG0161          42 DGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPHVMF-----GGFTHEP-AIELAEKLAELAPEGGLDHVFFTDSGS  115 (449)
T ss_pred             CCCEEEecccHHHHhhcCcCCHHHHHHHHHHHHhCCchhh-----cccCCch-HHHHHHHHHHhCCCCCccEEEEeCCch
Confidence            3445777654      567899999999999987633211     1111123 557899999999843224999999999


Q ss_pred             HHHHHHHHHccCCC---CCC-CCEEEEcCCCCcccHHHHHHHHHH-------cC---CEEEEEeCCC--------CCC--
Q 017640          140 EAINLVAYSWGLSN---LKS-GDEVILTVAEHHSAIVPWQLVAQK-------TG---ANLKFLNLND--------DES--  195 (368)
Q Consensus       140 ~a~~~~~~~~~~~~---~~~-gd~vl~~~~~~~s~~~~~~~~~~~-------~g---~~v~~v~~~~--------~~~--  195 (368)
                      +|++.+++....+.   -+| +.+++.-...||+......+++..       ++   ..+..++...        ++.  
T Consensus       116 eAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~  195 (449)
T COG0161         116 EAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEE  195 (449)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCCCChHH
Confidence            99999988742111   123 334888888888765443333210       00   1122222221        011  


Q ss_pred             --CCHHHHHHhccc----CceEEEEcccccc-cccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCC
Q 017640          196 --PDLDKLKEMLSR----KTKLVVIHHISNM-LASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGL  259 (368)
Q Consensus       196 --~d~~~l~~~l~~----~~~~v~~~~~~n~-tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~  259 (368)
                        -..++||+.|..    ++.+++++....- .|++.|    ++++.++|++||+++|.||+-. +|..    ..+-...
T Consensus       196 ~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi  275 (449)
T COG0161         196 FAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFACEHAGI  275 (449)
T ss_pred             HHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhhhhcCC
Confidence              125567776643    5688888888777 888877    8999999999999999999954 4433    1122234


Q ss_pred             CccEEEecCcCcC--CCCcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 017640          260 DADFLVASSHKMC--GPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL  337 (368)
Q Consensus       260 ~~d~~~~s~~K~~--g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~  337 (368)
                      .+|+++.+  |.+  |.-.+|.+++++++.+.+..-..+.+.      .         .+ ..+-|..+-+++.+.|+.+
T Consensus       276 ~PDi~~~a--KGLT~GY~Pl~a~l~~~~I~~~~~~~~~~~f~------H---------G~-TYsghPlacAaAla~L~i~  337 (449)
T COG0161         276 VPDILCLA--KGLTGGYLPLSAVLTSDRIYEAFSDGDAGAFM------H---------GH-TYSGNPLACAAALANLDIL  337 (449)
T ss_pred             CCCeeeec--ccccccchhhHhHhhhHHHHHHHhcccCCeec------c---------CC-ccccCHHHHHHHHHHHHHH
Confidence            69999988  844  333388899999887765532111111      0         11 1255555555566666666


Q ss_pred             HHhCHHHHHHHHHHHHHHHHHHHHh
Q 017640          338 STIGMQKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       338 ~~~g~~~i~~~~~~l~~~l~~~l~~  362 (368)
                      ++   +.+.++..++..++.+.|++
T Consensus       338 e~---e~l~~~~~~~~~~l~~~L~~  359 (449)
T COG0161         338 EE---EDLLERVAEIGAYLQAGLQA  359 (449)
T ss_pred             Hh---cCHHHHHHHHHHHHHHHHHH
Confidence            66   45667777888888888876

>PRK08297 L-lysine aminotransferase; Provisional

Probab=99.35  E-value=1.7e-10  Score=111.25  Aligned_cols=268  Identities=9%  Similarity=-0.003  Sum_probs=155.6

Q ss_pred             CeEEeccC------CCCCCcHHHHH--HHHHHHHHhhc-cCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCC
Q 017640           67 KLVYLDNA------ATSQKPIAVLK--ALQNYYEAYNS-NVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKN  137 (368)
Q Consensus        67 ~~i~l~~~------~~~~~~~~v~~--a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g  137 (368)
                      +.-|+|..      ..|+..|.+.+  ++++.+..... .+... ..    ..+...++.+.|+++.+.+..+.|.|++|
T Consensus        44 G~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~ql~~l~~~~~~~~-~~----~~~~~~~la~~l~~~~~p~~~~~v~f~~S  118 (443)
T PRK08297         44 GRRYLDMFTFFASSALGMNHPALADDPEFRAELGRAALNKPSNS-DV----YTVEMARFVDTFARVLGDPELPHLFFVDG  118 (443)
T ss_pred             CCEeeecccCHhhhcCCCCChHHhhHHHHHHHHHHhhhhccccC-Cc----CCHHHHHHHHHHHhhcCCCCCCEEEEeCc
Confidence            44577753      35678999999  99988876421 11100 01    12334457777777763222248999999


Q ss_pred             HHHHHHHHHHHccCCC-------C---CCCCEEEEcCCCCcccHHHHHHHHHHcCCE-----E---EEEeCC--C----C
Q 017640          138 ATEAINLVAYSWGLSN-------L---KSGDEVILTVAEHHSAIVPWQLVAQKTGAN-----L---KFLNLN--D----D  193 (368)
Q Consensus       138 ~t~a~~~~~~~~~~~~-------~---~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~-----v---~~v~~~--~----~  193 (368)
                      +++|++.+++......       -   ..+.+|+....+||+...............     .   ..++..  .    .
T Consensus       119 GsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (443)
T PRK08297        119 GALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLRFPLPG  198 (443)
T ss_pred             hHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCCCCCCCCCcc
Confidence            9999999998763210       0   013679999999998765433331100000     0   001100  0    0


Q ss_pred             CC---------CCHHHHHHhcc---cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCccc---
Q 017640          194 ES---------PDLDKLKEMLS---RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV---  253 (368)
Q Consensus       194 ~~---------~d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~~---  253 (368)
                      ..         -+++.+++.+.   .++.+|+++......|.+.|    +++|.++|++||+++|+||++. +|...   
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~  278 (443)
T PRK08297        199 EDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAW  278 (443)
T ss_pred             cccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHH
Confidence            00         02345566664   46799999999998898765    8999999999999999999985 54431   


Q ss_pred             -ccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 017640          254 -VDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGA  332 (368)
Q Consensus       254 -~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~  332 (368)
                       .+.....+|+++.  +|.+++  .|++ +.+++.+.....+.+..                ..+...+.|..+.++..+
T Consensus       279 a~~~~gv~PDiv~~--gK~l~~--~a~l-~~~~i~~~~~~~~~~~~----------------~~~~T~~gnpl~~aaa~a  337 (443)
T PRK08297        279 AYQQLGVRPDIVAF--GKKTQV--CGIM-AGRRVDEVEDNVFAVSS----------------RINSTWGGNLVDMVRARR  337 (443)
T ss_pred             HHHhcCCCCCEEEe--cccccc--ccee-cchHHHHhhhhhccCcc----------------ccCCCCCccHHHHHHHHH
Confidence             1122346999975  597642  2444 33332111110000000                011111356667777777


Q ss_pred             HHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          333 AIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       333 al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +++.+.+.   .+.+++.++.+++.+.|+++
T Consensus       338 ~L~~l~~~---~l~~~~~~~g~~l~~~L~~l  365 (443)
T PRK08297        338 ILEVIEED---GLVENAARQGEYLLARLEEL  365 (443)
T ss_pred             HHHHHHhc---CHHHHHHHHHHHHHHHHHHH
Confidence            78877763   45566667777776666543

>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=4.7e-11  Score=107.46  Aligned_cols=261  Identities=19%  Similarity=0.191  Sum_probs=171.6

Q ss_pred             CCCeEEeccCCCC--CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHH
Q 017640           65 SKKLVYLDNAATS--QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI  142 (368)
Q Consensus        65 ~~~~i~l~~~~~~--~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~  142 (368)
                      |.++++|+.+.+-  ...+.+.+.....+..+....= | ...-++..+..-++++.+|+++|.+.  .|+...|-+ ++
T Consensus        93 G~~~~N~aS~NfL~l~~~~~ike~a~~~lrkyGvGsC-G-PrGFYGt~DvHldlE~~iakF~G~E~--aivYs~gF~-ti  167 (467)
T KOG1358|consen   93 GKDVLNFASANFLGLIENEEIKEEASFTLRKYGVGSC-G-PRGFYGTIDVHLDLEKRIAKFMGTED--AIVYSYGFS-TI  167 (467)
T ss_pred             CceeecccchhhhhhcccHHHHHHHHHHHHHhCCCCc-C-CCcccccceeecccHHHHHHhhCCcc--eeeeccccc-hh
Confidence            4556666665544  4577888888888887632211 0 00112334555689999999999983  677777764 78


Q ss_pred             HHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccC-------------c
Q 017640          143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRK-------------T  209 (368)
Q Consensus       143 ~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~-------------~  209 (368)
                      ..++.++    .++||.+.+.+..+..+    +...+...-+++++..+     |.++|++.+.++             .
T Consensus       168 ~S~ipaf----sKrGDIi~~de~~nfaI----q~GlqlSRS~i~~Fkhn-----dm~~lerll~E~~~~~~K~~k~~~~R  234 (467)
T KOG1358|consen  168 ESAIPAF----SKRGDIIFVDEAVNFAI----QKGLQLSRSTISYFKHN-----DMEDLERLLPEQEDEDQKNPKKALTR  234 (467)
T ss_pred             hhcchhh----hccCcEEEEehhhhHHH----HHHHhhhhheeEEecCC-----CHHHHHHhccCcchhhhhccccccce
Confidence            8888888    89999999999855554    44334446678888877     888887776432             2


Q ss_pred             eEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCccc---------ccCCCCCccEEEecCcCcCCCCcceEE
Q 017640          210 KLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMV---------VDVQGLDADFLVASSHKMCGPTGIGFL  280 (368)
Q Consensus       210 ~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~---------~~~~~~~~d~~~~s~~K~~g~~G~G~l  280 (368)
                      +.|++....-++|.+.|+.+|.++..+|...+|+|+..++|...         ...+..+.|++++|+.-.++..| |+.
T Consensus       235 rfiv~EGl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~alas~G-gFc  313 (467)
T KOG1358|consen  235 RFIVVEGLYANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALASGG-GFC  313 (467)
T ss_pred             EEEEEEeeccCCCcccccHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeecccccccccC-cee
Confidence            67889999999999999999999999999999999999876541         12233358999999888776654 777


Q ss_pred             EEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Q 017640          281 FGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVI  360 (368)
Q Consensus       281 ~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l  360 (368)
                      .++.-.++. +.. .|                ....|....|++.. .++..++...++.  +.+.+.+.....-+...+
T Consensus       314 ~G~~~i~~h-QrL-Sg----------------~~Y~fSAslPp~la-~aa~~ai~i~~~~--p~~~~~L~~k~~~~H~~l  372 (467)
T KOG1358|consen  314 AGKSFIADH-QRL-SG----------------SGYCFSASLPPYLA-GAAIKAILIEEWN--PEIVQPLRAKVAKFHAAL  372 (467)
T ss_pred             ecceeeEee-eec-cc----------------cceeeeccCchhhh-hhHHHHHHHHhhC--cchhhhhhccccccchhh
Confidence            764433322 211 11                11234333444443 3445556655553  224444555555555555


Q ss_pred             HhhcC
Q 017640          361 QERHN  365 (368)
Q Consensus       361 ~~~~g  365 (368)
                      ....+
T Consensus       373 ~~~s~  377 (467)
T KOG1358|consen  373 SSNSG  377 (467)
T ss_pred             hcCCc
Confidence            54433

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=99.32  E-value=1.2e-10  Score=108.68  Aligned_cols=255  Identities=15%  Similarity=0.094  Sum_probs=159.4

Q ss_pred             EEecc--CCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHH
Q 017640           69 VYLDN--AATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV  145 (368)
Q Consensus        69 i~l~~--~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~  145 (368)
                      +++|-  .+.+ .+++.+.+++..--+.+             +..+...++++.++++||.+   .+++|..++.+...+
T Consensus        42 V~IDLrSDTgT~apS~~m~aAM~~GDD~Y-------------~gdpSv~~Lee~vael~G~E---~alpthqGRgaE~Il  105 (467)
T TIGR02617        42 VFIDLLTDSGTGAVTQSMQAAMMRGDEAY-------------SGSRSYYALAESVKNIFGYQ---YTIPTHQGRGAEQIY  105 (467)
T ss_pred             eEEECccCCCCCCCCHHHHHHHHcCCccc-------------ccCchHHHHHHHHHHHhCCc---eEEECCCCchHHHHH
Confidence            45554  4444 58888888887511111             11334458999999999997   568898888888888


Q ss_pred             HHHccCCCCC-CCCEEEEcCC----CCcccHHHHHHHHHHcCCEEEEEeCC----------CCCCCCHHHHHHhccc---
Q 017640          146 AYSWGLSNLK-SGDEVILTVA----EHHSAIVPWQLVAQKTGANLKFLNLN----------DDESPDLDKLKEMLSR---  207 (368)
Q Consensus       146 ~~~~~~~~~~-~gd~vl~~~~----~~~s~~~~~~~~~~~~g~~v~~v~~~----------~~~~~d~~~l~~~l~~---  207 (368)
                      ...+    ++ +|+++.+...    .|...+......+...|+.++.++.+          .+|.+|++.|+++|.+   
T Consensus       106 ~~~~----~~~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~  181 (467)
T TIGR02617       106 IPVL----IKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGP  181 (467)
T ss_pred             HHhh----cccccccccccccccccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCC
Confidence            8877    66 7888886664    45555544455566779888776432          3589999999999974   


Q ss_pred             -CceEEEEcccccc-cccccC---HHHHHHHHHhcCCEEEEecCCcC-----------CcccccCC------CCCccEEE
Q 017640          208 -KTKLVVIHHISNM-LASILP---IEEIVHWSHDVGAKVLVDACQSV-----------PHMVVDVQ------GLDADFLV  265 (368)
Q Consensus       208 -~~~~v~~~~~~n~-tG~~~~---l~~i~~l~~~~g~~li~D~a~~~-----------~~~~~~~~------~~~~d~~~  265 (368)
                       +...+...-.+|. .|+.+|   ++++.++|++||+.++.|++--+           +....++.      ....|.++
T Consensus       182 ~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt  261 (467)
T TIGR02617       182 NNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLA  261 (467)
T ss_pred             CCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEE
Confidence             2333332222333 577888   67899999999999999997321           12212211      13589999


Q ss_pred             ecCcCcCCCCcceEEEEccc----ccccCCCcccCCcceeecccCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHh
Q 017640          266 ASSHKMCGPTGIGFLFGKSD----LLSAMPPFLGGGEMISDVFLDHSTFADPPSRF-EAGTPAIGEAIGLGAAIDYLSTI  340 (368)
Q Consensus       266 ~s~~K~~g~~G~G~l~~~~~----li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~gt~~~~~~~a~~~al~~~~~~  340 (368)
                      .|++|.+|.+=.|++..+++    +.+.++....-                 ..+| ..|..+.--+-+++.+|+...+ 
T Consensus       262 ~slsKglgApvGg~Lag~d~~~~~l~~~~~~~~i~-----------------~EGf~tYGGlagrd~ea~a~Gl~e~~~-  323 (467)
T TIGR02617       262 MSAKKDAMVPMGGLLCFKDDSFFDVYTECRTLCVV-----------------QEGFPTYGGLEGGAMERLAVGLYDGMN-  323 (467)
T ss_pred             EEcCCCCCCcccceEEecchhHHHHHHHHHhhccc-----------------ccCCcCcCchhHHHHHHHHhhhhhccc-
Confidence            99999777553488888776    22333322210                 0122 1344444455556655554322 


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHhh
Q 017640          341 GMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       341 g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                       .+.+ .+.-...+|+.+.|.+.
T Consensus       324 -~~yl-~~ri~qv~yl~~~L~~~  344 (467)
T TIGR02617       324 -LDWL-AYRINQVQYLVNGLEEI  344 (467)
T ss_pred             -HHHH-HHHHHHHHHHHHHHHhC
Confidence             3344 44445567777777654

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.27  E-value=1.2e-09  Score=111.36  Aligned_cols=268  Identities=10%  Similarity=0.011  Sum_probs=162.7

Q ss_pred             EEeccCC------CC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHH
Q 017640           69 VYLDNAA------TS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEA  141 (368)
Q Consensus        69 i~l~~~~------~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a  141 (368)
                      -|||..+      .+ ...+.+.+++.+++.++.....     .+ ...+...++.++|++..+.+.-+.|+|++|+++|
T Consensus       366 ~ylD~~sg~w~~~lG~h~~p~I~~Ai~~Qa~rl~hv~~-----~~-~~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeA  439 (817)
T PLN02974        366 QQFDACASWWTQGPDPTLQPELARAVAYAAGRYGHVMF-----PE-NVHEPALRAAELLLGGPGKGWASRVFFSDNGSTA  439 (817)
T ss_pred             eEEEcchhHHHhCCCcCCCHHHHHHHHHHHhhCCcccc-----Cc-cCCHHHHHHHHHHHhccCCCCCCEEEECCchHHH
Confidence            5777654      34 4689999999999887532211     00 0123334677777775442212389999999999


Q ss_pred             HHHHHHHccC-CCC--C--------------CCCEEEEcCCCCcccHHHHHHHHHHc---C---CE-----EEEEeCC--
Q 017640          142 INLVAYSWGL-SNL--K--------------SGDEVILTVAEHHSAIVPWQLVAQKT---G---AN-----LKFLNLN--  191 (368)
Q Consensus       142 ~~~~~~~~~~-~~~--~--------------~gd~vl~~~~~~~s~~~~~~~~~~~~---g---~~-----v~~v~~~--  191 (368)
                      ++.+++...+ ...  .              .+.+|+.....||+.......+....   +   ..     ...++..  
T Consensus       440 vE~AlKmA~r~y~~~~G~~~~~~~~~~~~~~~r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~  519 (817)
T PLN02974        440 IEVALKMAFRKFIVDHGFLENSGNEKRGGDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTV  519 (817)
T ss_pred             HHHHHHHHHHHHHHhcCCCcccccccccccCCCCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCcc
Confidence            9999886521 110  1              24579999999998765544432100   0   00     0111100  


Q ss_pred             ------------CCC-----------C-----CC------------HHHHHHhcc--------cCceEEEEccc-ccccc
Q 017640          192 ------------DDE-----------S-----PD------------LDKLKEMLS--------RKTKLVVIHHI-SNMLA  222 (368)
Q Consensus       192 ------------~~~-----------~-----~d------------~~~l~~~l~--------~~~~~v~~~~~-~n~tG  222 (368)
                                  ..+           .     .|            .+.+++.|.        +++.+|+++.. +.-.|
T Consensus       520 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGG  599 (817)
T PLN02974        520 GMRNGRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGG  599 (817)
T ss_pred             ccccccccccCCccccccccccccccccccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCC
Confidence                        000           0     00            244666653        25688899885 67778


Q ss_pred             cccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEEecCcCcCCCC--cceEEEEcccccccCC
Q 017640          223 SILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGPT--GIGFLFGKSDLLSAMP  291 (368)
Q Consensus       223 ~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~g~~--G~G~l~~~~~li~~l~  291 (368)
                      .+.|    ++.|.++|++||+++|+||++. +|..    ..+.....+|+++.+  |.++..  .+|.+++++++.+.+.
T Consensus       600 mi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv~PDIi~~g--KgLtgG~~Plaa~l~~~~I~~~f~  677 (817)
T PLN02974        600 MLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGCKPDIACYA--KLLTGGLVPLAATLATEEVFEAFR  677 (817)
T ss_pred             cccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcCCCCCEEeec--ccccCCCCccEEEEEcHHHHHhhc
Confidence            8876    8999999999999999999987 4332    122233469999988  965432  4899999999877653


Q ss_pred             C-cccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHH
Q 017640          292 P-FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG-MQKIHAYEVKWIICSIIVI  360 (368)
Q Consensus       292 ~-~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g-~~~i~~~~~~l~~~l~~~l  360 (368)
                      . ...+..                ..-...+.+..+.+++.++|+.+++.+ ...+.++..++..++.+.+
T Consensus       678 ~~~~~~~~----------------~hg~Ty~gnpl~cAaala~L~~~~~~~~~~~l~~~~~~l~~~l~~~l  732 (817)
T PLN02974        678 GPSKLDAL----------------LHGHSYTAHPMGCAAAAKALQWYKDPSTNPNLIPPGSRLRELWDEEL  732 (817)
T ss_pred             cccccCCc----------------ccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHH
Confidence            1 100000                000122677777888888898888753 2355566666666655555

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.24  E-value=8.1e-10  Score=98.74  Aligned_cols=272  Identities=17%  Similarity=0.156  Sum_probs=174.6

Q ss_pred             CCCcHHHHHHHHHHHHHhh--ccCCCCcchhhHHHHHH-HHHHHHHHHHHcCCCCCC-cE-EEeCCHHHHHHHHHHHccC
Q 017640           77 SQKPIAVLKALQNYYEAYN--SNVHRGIHFLSAKATDE-YELARKKVAAFINASDSG-EI-VFTKNATEAINLVAYSWGL  151 (368)
Q Consensus        77 ~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~r~~la~~~~~~~~~-~v-~~t~g~t~a~~~~~~~~~~  151 (368)
                      ...+..|.+++...+..-+  +.|. ..++.|..+.+. ..-.+++..+.|+++++. .| |-.-+++-|+..+..++  
T Consensus        50 NFts~aVmeAlGS~ltNKYSEGyPG-~RYYGGne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SGSPANfavYtal--  126 (477)
T KOG2467|consen   50 NFTSRAVMEALGSCLTNKYSEGYPG-ARYYGGNEYIDQIELLCQKRALEAFGLDPEKWGVNVQPYSGSPANFAVYTAL--  126 (477)
T ss_pred             cchHHHHHHHHhHHhhcccccCCCc-ccccCcchHHHHHHHHHHHHHHHHhCCCHHHCceeeccCCCCchhhHHHhhh--
Confidence            3567899999998888632  2332 233444444444 444788889999998653 33 22245667999999988  


Q ss_pred             CCCCCCCEEEEcC---CCCcccHHHHHHHHHHcCCEEEE-----EeCC-CCCCCCHHHHHHhcc-cCceEEEEccccccc
Q 017640          152 SNLKSGDEVILTV---AEHHSAIVPWQLVAQKTGANLKF-----LNLN-DDESPDLDKLKEMLS-RKTKLVVIHHISNML  221 (368)
Q Consensus       152 ~~~~~gd~vl~~~---~~~~s~~~~~~~~~~~~g~~v~~-----v~~~-~~~~~d~~~l~~~l~-~~~~~v~~~~~~n~t  221 (368)
                        ++|+++|.-.+   ..|-+.-  +..-.+...+.-++     ..++ ..|.||-+.||+.-. -++++|+.-....+ 
T Consensus       127 --l~Ph~RiMGLDLP~GGHLsHG--y~T~~kkISa~SiyFeSmPYkv~~~TG~IDYD~Le~~A~~frPk~iiaG~SaY~-  201 (477)
T KOG2467|consen  127 --LKPHERIMGLDLPSGGHLSHG--YQTPTKKISATSIYFESMPYKVDPSTGYIDYDKLEKTATLFRPKLIIAGTSAYS-  201 (477)
T ss_pred             --cCCCCeeeeccCCCCCccccc--cccCCceeeeeeeecccCceeeCCCCCceehHHHHHHHHhcCCcEEEeccccch-
Confidence              99999988544   4444432  11111111222222     2233 348999999987654 37887775544333 


Q ss_pred             ccccCHHHHHHHHHhcCCEEEEecCCcCCcccc---cCCCCCccEEEecCcCc-CCCCcceEEEEcccccccCCCcccCC
Q 017640          222 ASILPIEEIVHWSHDVGAKVLVDACQSVPHMVV---DVQGLDADFLVASSHKM-CGPTGIGFLFGKSDLLSAMPPFLGGG  297 (368)
Q Consensus       222 G~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~---~~~~~~~d~~~~s~~K~-~g~~G~G~l~~~~~li~~l~~~~~g~  297 (368)
                       ..++.+.+.++|.+.|++++.|.+|-.|-+.-   ...-..+|+++.+.||. -||.| |+++.|+.+.. ..+..  +
T Consensus       202 -R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey~DiVTTTTHKsLRGPRg-~mIFyRkGvk~-~~~k~--g  276 (477)
T KOG2467|consen  202 -RLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEYCDIVTTTTHKSLRGPRG-AMIFYRKGVKS-IKPKQ--G  276 (477)
T ss_pred             -hhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccccceeeccccccccCCcc-eeEEEeccCCc-CCCCC--C
Confidence             56778999999999999999999997554311   11122599999999994 57775 88888876532 22111  1


Q ss_pred             cceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          298 EMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      ..+.+...+...+  .-.--..|.|.-..+.+++.||..-.........+++.+++..+.++|.++
T Consensus       277 ~~i~ydlE~kINf--aVFP~lQGGPHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l~~~  340 (477)
T KOG2467|consen  277 KEILYDLEDKINF--AVFPGLQGGPHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALASALISR  340 (477)
T ss_pred             Ccceechhhhhhh--hccccccCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            1111111111110  111123677888899999999998888778888899999999999998876

>KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism]

Probab=99.20  E-value=2.4e-09  Score=92.62  Aligned_cols=277  Identities=16%  Similarity=0.167  Sum_probs=188.4

Q ss_pred             CCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCC--CcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeC-CHHHHH
Q 017640           66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHR--GIHFLSAKATDEYELARKKVAAFINASDSGEIVFTK-NATEAI  142 (368)
Q Consensus        66 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~-g~t~a~  142 (368)
                      .++++|..+ +..+|.+|+..+++-+-.+++..-.  -....+..+...+++.+..+.++++.++...|+|.. |+|.-.
T Consensus         6 ~~vvnFaaG-PAklp~~VL~e~qkdl~n~~g~GisV~EmSHRsk~f~kii~~tes~lreLlniPdn~~vlf~QGGGt~qF   84 (370)
T KOG2790|consen    6 ERVVNFAAG-PAKLPESVLLEAQKDLLNFNGSGISVMEMSHRSKDFAKIINDTESLLRELLNIPDNYKVLFLQGGGTGQF   84 (370)
T ss_pred             cceeecCCC-cccCCHHHHHHHHHHhhccCCCcceEEEecccchhHHHHHHHHHHHHHHHHcCCCceeEEEEeCCCcccc
Confidence            455666543 3467888888877777665443210  122334557889999999999999999888888774 445444


Q ss_pred             HHHHHHccCCCCCCC---CEEEEcCCCCcccHHHHHHHHHHcCCE-EEEEeCCCC---CCCCHHHHHHhcccCceEEEEc
Q 017640          143 NLVAYSWGLSNLKSG---DEVILTVAEHHSAIVPWQLVAQKTGAN-LKFLNLNDD---ESPDLDKLKEMLSRKTKLVVIH  215 (368)
Q Consensus       143 ~~~~~~~~~~~~~~g---d~vl~~~~~~~s~~~~~~~~~~~~g~~-v~~v~~~~~---~~~d~~~l~~~l~~~~~~v~~~  215 (368)
                      ..+..-+  ..++.|   |-|+..+.    ...++..+ +++|.. .+..+..+-   -.+|.+.++  ++++.+.|.+|
T Consensus        85 aAv~lNL--~glK~g~~AdYiVTGsW----S~KA~~EA-kk~~~~~~V~~~~k~y~ygkvPd~~~w~--~~~da~yvyyC  155 (370)
T KOG2790|consen   85 AAVPLNL--IGLKHGRCADYVVTGSW----SAKAAEEA-KKYGTPNIVIPKLKSYTYGKVPDPSTWE--LNPDASYVYYC  155 (370)
T ss_pred             cccchhh--hccccCCccceEEeccc----cHHHHHHH-HhhCCceEEeccccccccCcCCChhhcc--cCCCccEEEEe
Confidence            3333222  123444   56777666    44456665 455543 333333211   123555554  34566789999


Q ss_pred             ccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCccc
Q 017640          216 HISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLG  295 (368)
Q Consensus       216 ~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~  295 (368)
                      ...+.-|+-++.-.   +-.-+|..++.|...-+-..|+|+.+  .++++...+|..|+.|+.++++|++++....+..+
T Consensus       156 aNETVHGVEf~~~P---~~~~~~~vlVaDmSSnflSrpvDvsk--~gvi~aGAQKN~G~aG~Tvvivr~dllg~~~~~tP  230 (370)
T KOG2790|consen  156 ANETVHGVEFDFIP---VNDPKGAVLVADMSSNFLSRPVDVSK--FGVIFAGAQKNVGPAGVTVVIVRKDLLGNALDITP  230 (370)
T ss_pred             cCceeeceecCCCC---CCCCCCceEEEecccchhcCCccchh--cceEEeccccccCccccEEEEEehhhhcccccCCc
Confidence            99888898877332   22357899999999888888888877  56888999999999999999999999977664432


Q ss_pred             CCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          296 GGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       296 g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~-g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      ...       ++...  ..+.....||+..+++.....++++.+. |+.++.+...+.+..+++.|.+..|+
T Consensus       231 ~v~-------dyk~~--~~NnSlyNTpP~f~iy~~~Lv~~~il~~GGl~a~e~~n~~KskllYd~iD~s~gf  293 (370)
T KOG2790|consen  231 SVL-------DYKIM--DKNNSLYNTPPCFGIYVMGLVFEWILEKGGLAAMEKLNQEKSKLLYDAIDNSNGF  293 (370)
T ss_pred             ccc-------ceeee--ccccccccCCCeeeeeehhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCCe
Confidence            111       11111  1123334599999999999999999886 78999999999999999999988664

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=99.16  E-value=6.6e-10  Score=96.85  Aligned_cols=171  Identities=23%  Similarity=0.306  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHcCCCCCC-cEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHH----------HHHc
Q 017640          113 YELARKKVAAFINASDSG-EIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLV----------AQKT  181 (368)
Q Consensus       113 ~~~~r~~la~~~~~~~~~-~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~----------~~~~  181 (368)
                      .+.+.+-.|+.||++..- ...|. ++|.||..++.++    ++|||+++.....-+.   .+...          .+.+
T Consensus        67 RdtLe~vyA~vf~aE~a~VRpq~i-sGTHAI~~aLfg~----LRpgDell~i~G~PYD---TLeevIG~rg~~~gSL~df  138 (416)
T COG4100          67 RDTLERVYAQVFGAEAALVRPQII-SGTHAIACALFGI----LRPGDELLYITGSPYD---TLEEVIGLRGEGQGSLKDF  138 (416)
T ss_pred             hhHHHHHHHHHhccccceeeeeee-cchhHHHHHHHhc----cCCCCeEEEecCCcch---hHHHHhccCCCCcccHHHh
Confidence            456888899999998641 22344 5578999999988    9999998877654333   33332          2456


Q ss_pred             CCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEccccc----ccccccCHHHHHHHHHhc--CCEEEEecCCcCCccccc
Q 017640          182 GANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISN----MLASILPIEEIVHWSHDV--GAKVLVDACQSVPHMVVD  255 (368)
Q Consensus       182 g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n----~tG~~~~l~~i~~l~~~~--g~~li~D~a~~~~~~~~~  255 (368)
                      |++.+.|++..+|.+|.+.++..+.++||+|.+.....    |+=.+..++++..+.|+-  ++++++|.+|+-.....+
T Consensus       139 gi~Y~~v~Lt~~gkiD~~~v~~~i~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~~E  218 (416)
T COG4100         139 GIKYKAVPLTADGKIDIQAVKTAISDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVEEKE  218 (416)
T ss_pred             CcceeecccccCCcccHHHHHHhcCccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhhhccC
Confidence            78899999999999999999999999999998876521    111222256666666663  699999999996666566


Q ss_pred             CCCCCccEEEecCcCcCCCC---cceEEEEcccccccCC
Q 017640          256 VQGLDADFLVASSHKMCGPT---GIGFLFGKSDLLSAMP  291 (368)
Q Consensus       256 ~~~~~~d~~~~s~~K~~g~~---G~G~l~~~~~li~~l~  291 (368)
                      ....+.|++.+|+-|.-|+.   -.|++..++++++...
T Consensus       219 Pt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve~~~  257 (416)
T COG4100         219 PTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAELVEAAA  257 (416)
T ss_pred             ccccchhhhccceeeCCCCceeeccceeechHHHHHhhc
Confidence            66778999999999954421   2799999999988654

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=99.16  E-value=1.8e-09  Score=97.46  Aligned_cols=260  Identities=12%  Similarity=0.076  Sum_probs=163.0

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|||..+      .|++.|.|.+++.+.+..++....       ....+-+.++.+.|+..+-.+-. .++|++|++
T Consensus        48 ~G~ryLD~f~Gi~tvslGHchP~v~~a~~kQl~~l~H~t~-------~~~~~pi~~~Ae~L~s~~P~~l~-~vfF~nsGs  119 (442)
T KOG1404|consen   48 EGRRYLDAFGGIVTVSLGHCHPDVVAAAVKQLKKLYHTTS-------GYLNPPIHDLAEALVSKLPGDLK-VVFFVNSGS  119 (442)
T ss_pred             CCceeehhhCCeEEEEcCCCChHHHHHHHHhhhhhEEeec-------cccCCcHHHHHHHHHHhCCCCce-EEEEecCCc
Confidence            4556888754      668999999999998876543221       11234455788888888876654 789999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC-----------CC---CCC--C-----H
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN-----------DD---ESP--D-----L  198 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~-----------~~---~~~--d-----~  198 (368)
                      ||++++++....  -...-.++-...+||++......+   .+......+.+           ++   +..  +     -
T Consensus       120 EANelal~mar~--Yt~~~diIa~r~~YHG~t~~t~gl---t~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~  194 (442)
T KOG1404|consen  120 EANELALKMARL--YTGNLDIIARRNSYHGNTLYTLGL---TGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEAS  194 (442)
T ss_pred             hHHHHHHHHHHH--hcCCceEEEeeccccCCchhhccc---ccCCcccccCCCCCCcccccCCCCcccccCCCCchhhhH
Confidence            999999987532  122335666666677654322222   12222211111           11   000  0     1


Q ss_pred             ----HHHHHhcc----cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-C---CcccccCC--CCC
Q 017640          199 ----DKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-V---PHMVVDVQ--GLD  260 (368)
Q Consensus       199 ----~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~---~~~~~~~~--~~~  260 (368)
                          ++++..+.    ..+.+++.+.++...|.+.+    +++..++|+++|.++|.||+|. +   |++ +.++  ..-
T Consensus       195 d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~~-wgfe~h~v~  273 (442)
T KOG1404|consen  195 DRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGHM-WGFESHGVV  273 (442)
T ss_pred             HHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhcccccccc-ccccccCCC
Confidence                22333332    24578889999988888876    8999999999999999999987 2   322 2333  334


Q ss_pred             ccEEEecCcCcCC-CCcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 017640          261 ADFLVASSHKMCG-PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST  339 (368)
Q Consensus       261 ~d~~~~s~~K~~g-~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~  339 (368)
                      +|+++.+  |.+| +..+|.++..+++.+.+.......+                 .  -|.-|+. -++..+.++.+++
T Consensus       274 PDIvTmA--KgiGnG~Pl~AVvtt~EIa~v~~~~~~~fn-----------------T--yggnP~a-~avg~aVL~Vike  331 (442)
T KOG1404|consen  274 PDIVTMA--KGIGNGFPLGAVVTTPEIADVLNQKSSHFN-----------------T--YGGNPVA-CAVGLAVLKVIKE  331 (442)
T ss_pred             ccHHHHH--hhccCCCcceeeecCHHHHHHHHhcccccc-----------------c--cCCCchh-HHHHHHHHHHHHH
Confidence            6766554  9655 3448999999998776654432111                 1  1122222 2333444555554


Q ss_pred             hCHHHHHHHHHHHHHHHHHHHHhhc
Q 017640          340 IGMQKIHAYEVKWIICSIIVIQERH  364 (368)
Q Consensus       340 ~g~~~i~~~~~~l~~~l~~~l~~~~  364 (368)
                         +.+.++..+...|+.+.|.+..
T Consensus       332 ---e~LqE~aa~vG~yl~~~l~~l~  353 (442)
T KOG1404|consen  332 ---ENLQENAAEVGSYLLEKLAALK  353 (442)
T ss_pred             ---HhHHHHHHHHHHHHHHHHHHHh
Confidence               8889999999999999887653

>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]

Probab=99.10  E-value=4.1e-09  Score=97.11  Aligned_cols=177  Identities=16%  Similarity=0.107  Sum_probs=124.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCCC--------CCcEEEeCCHHHHHHHHHHHccCCC---CCCC-----------C-EEE
Q 017640          105 LSAKATDEYELARKKVAAFINASD--------SGEIVFTKNATEAINLVAYSWGLSN---LKSG-----------D-EVI  161 (368)
Q Consensus       105 ~~~~~~~~~~~~r~~la~~~~~~~--------~~~v~~t~g~t~a~~~~~~~~~~~~---~~~g-----------d-~vl  161 (368)
                      .++..+++..-+-++++++++.|.        +..-++..+++++...++.+.+...   ++.+           + .+.
T Consensus       107 ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y  186 (511)
T KOG0628|consen  107 SSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAY  186 (511)
T ss_pred             cCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEE
Confidence            345567777778899999998871        1244666677777777766542110   1222           2 344


Q ss_pred             EcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccC------ceEEEEcccccccccccCHHHHHHHHH
Q 017640          162 LTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRK------TKLVVIHHISNMLASILPIEEIVHWSH  235 (368)
Q Consensus       162 ~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~------~~~v~~~~~~n~tG~~~~l~~i~~l~~  235 (368)
                      .++..|.+    ++..|-..|.+++.++.+.++.++.+.|+++|.++      |-+++.+-.++.+-...++.+|..+|+
T Consensus       187 ~SDqahss----veka~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca~D~l~elg~Vc~  262 (511)
T KOG0628|consen  187 CSDQAHSS----VEKACLIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSCAFDELEELGPVCR  262 (511)
T ss_pred             ecCcccch----HHHhHhhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEEeecCccccccccHHHhcchhh
Confidence            55666655    56667777899999999999999999999999764      345556666555556667999999999


Q ss_pred             hcCCEEEEecCCcCCcccc-cCCC-----CCccEEEecCcCcCC-CCcceEEEEccc
Q 017640          236 DVGAKVLVDACQSVPHMVV-DVQG-----LDADFLVASSHKMCG-PTGIGFLFGKSD  285 (368)
Q Consensus       236 ~~g~~li~D~a~~~~~~~~-~~~~-----~~~d~~~~s~~K~~g-~~G~G~l~~~~~  285 (368)
                      ++|+|+++|++|+-...-. ++..     ...|.+.+..||++- --.|.-+|+++.
T Consensus       263 ~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~  319 (511)
T KOG0628|consen  263 EEGLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDG  319 (511)
T ss_pred             hcCEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecC
Confidence            9999999999999444311 1111     147899999999643 334888888886

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=98.95  E-value=2.3e-08  Score=95.55  Aligned_cols=237  Identities=16%  Similarity=0.172  Sum_probs=156.0

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCcEEEeCC-HHH---HHHHHHHHccCCCCCCC----CEEEEcCCCCcccHHHHHHHH
Q 017640          107 AKATDEYELARKKVAAFINASDSGEIVFTKN-ATE---AINLVAYSWGLSNLKSG----DEVILTVAEHHSAIVPWQLVA  178 (368)
Q Consensus       107 ~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g-~t~---a~~~~~~~~~~~~~~~g----d~vl~~~~~~~s~~~~~~~~~  178 (368)
                      .+..+++.++++.|.+..|.+   .+.|.++ +.+   +=..+++++   ...+|    ...+++-..|..+...    +
T Consensus       578 qGY~~lf~~Le~~Lc~iTG~D---~~s~QPNsGA~GEYaGL~~IRaY---~~~kge~hRnvClIPvSAHGTNPAS----A  647 (1001)
T KOG2040|consen  578 QGYQQLFTELEKDLCEITGFD---SFSLQPNSGAQGEYAGLRVIRAY---LESKGEGHRNVCLIPVSAHGTNPAS----A  647 (1001)
T ss_pred             hhHHHHHHHHHHHhheeeccc---ceeecCCCCcccchhhHHHHHHH---HHhccCCcceeEEEeecccCCChhh----H
Confidence            345788889999999999986   5666642 222   334455555   23333    3578888788776533    3


Q ss_pred             HHcCCEEEEEeCCCCCCCCHHHHHHhccc---CceEEEEcccccccccccC-HHHHHHHHHhcCCEEEEecCCcCCcccc
Q 017640          179 QKTGANLKFLNLNDDESPDLDKLKEMLSR---KTKLVVIHHISNMLASILP-IEEIVHWSHDVGAKVLVDACQSVPHMVV  254 (368)
Q Consensus       179 ~~~g~~v~~v~~~~~~~~d~~~l~~~l~~---~~~~v~~~~~~n~tG~~~~-l~~i~~l~~~~g~~li~D~a~~~~~~~~  254 (368)
                      ...|.+++.|.++.+|.+|..+|+++.++   +-.+++++.|++. |+.-+ +++++++.|+||-.|..|++..-..+-+
T Consensus       648 ~MagmkvvpV~~~~~G~id~~dLk~kaekh~~~Laa~MvTYPST~-GvfE~~i~d~cd~iHehGGQVYlDGANMNAqVGl  726 (1001)
T KOG2040|consen  648 AMAGMKVVPVGCDANGNIDMVDLKAKAEKHKDNLAALMVTYPSTH-GVFEEGIDDICDIIHEHGGQVYLDGANMNAQVGL  726 (1001)
T ss_pred             HhcCCEEEEeeccCCCCccHHHHHHHHHHhhhhhheeEEeccccc-ccccccHHHHHHHHHhcCCEEEecCCCccceecc
Confidence            45699999999999999999999988765   3478889888775 55555 9999999999999999999987554433


Q ss_pred             -cCCCCCccEEEecCcCcC------CCCcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCC-CCCCCHHH
Q 017640          255 -DVQGLDADFLVASSHKMC------GPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFE-AGTPAIGE  326 (368)
Q Consensus       255 -~~~~~~~d~~~~s~~K~~------g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~gt~~~~~  326 (368)
                       ...+.+.|+.-..+||.|      |++|+|=+-+++.+...+.    +...+.-...      .....+. ....++.+
T Consensus       727 c~pGd~GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~HLapfLP----~HpVvs~~~~------~~~~~~gsVsaaP~Gs  796 (1001)
T KOG2040|consen  727 CRPGDIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLP----SHPVVSPGRP------EDTSPVGSVSAAPWGS  796 (1001)
T ss_pred             cCCccccccceeecccceeeecCCCCCCCCCccchhhhccccCC----CCCccCCCCC------CCCCCccceeccCCCc
Confidence             456678999999999965      2445777778877765554    2111100000      0000000 00111111


Q ss_pred             HHHH---HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhc
Q 017640          327 AIGL---GAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERH  364 (368)
Q Consensus       327 ~~a~---~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~  364 (368)
                      ..-+   .+.++++...|++...+-..-+++|+.++|+.+.
T Consensus       797 a~ILpISwaYikmMG~~GL~~as~~AiLNaNYMakRLe~hY  837 (1001)
T KOG2040|consen  797 ALILPISWAYIKMMGSGGLKDASKIAILNANYMAKRLESHY  837 (1001)
T ss_pred             ceeehhHHHHHHHhcccccchhhHHHhhhhHHHHHHHhhcc
Confidence            1112   2334445555777777777788899999988653

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=98.88  E-value=2.2e-09  Score=98.49  Aligned_cols=178  Identities=15%  Similarity=0.106  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHcCCCCCCcEEEeCCHH-HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeC
Q 017640          112 EYELARKKVAAFINASDSGEIVFTKNAT-EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL  190 (368)
Q Consensus       112 ~~~~~r~~la~~~~~~~~~~v~~t~g~t-~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~  190 (368)
                      +-..+..-+.+..|.+.....++++-+| .++.+.+.+++  .-..++.|+.+..+|.+.+.+.    ...|.+++.|+.
T Consensus        57 ltn~l~~d~~~~~G~~~~~~~~~vP~atgm~l~l~l~~l~--~r~~a~~Viw~ridqkSc~kai----~~AGl~~~vV~~  130 (389)
T PF05889_consen   57 LTNSLVLDALRLAGLRSVKSCFVVPMATGMSLTLCLLALR--MRPKAKYVIWPRIDQKSCFKAI----ERAGLEPVVVEN  130 (389)
T ss_dssp             HHHHHHHHHHHHTTHTTHCEEEEESS-HHHHHHHHHHHHH--HHCT--EEEEEEEETHHHHHHH----HHTT-EEEEE-E
T ss_pred             HHHHHHHHHHHHcCCccccceEEEecccccHHHHHHHHHh--cccCCceEEEeeccccchHHHH----HhcCCeEEEeec
Confidence            3334555566678887544566776665 24445555552  1246789999999998865544    445999999986


Q ss_pred             C--CC-CCCCHHHHHHhccc---CceEEEEcccccccccccC-HHHHHHHHHhcCCEEEEecCCcCCcccc----c--CC
Q 017640          191 N--DD-ESPDLDKLKEMLSR---KTKLVVIHHISNMLASILP-IEEIVHWSHDVGAKVLVDACQSVPHMVV----D--VQ  257 (368)
Q Consensus       191 ~--~~-~~~d~~~l~~~l~~---~~~~v~~~~~~n~tG~~~~-l~~i~~l~~~~g~~li~D~a~~~~~~~~----~--~~  257 (368)
                      .  +| -..|++.+|+.+++   +..+.++++.+-.-|...| +++|+++|++||+..++-.||+......    +  ..
T Consensus       131 ~~~~d~l~td~~~ie~~i~~~G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~  210 (389)
T PF05889_consen  131 VLEGDELITDLEAIEAKIEELGADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWR  210 (389)
T ss_dssp             EEETTEEEEHHHHHHHHHHHHCGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHH
T ss_pred             cCCCCeeeccHHHHHHHHHHhCCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHh
Confidence            4  23 23367888887753   5578888888888888888 9999999999999999999999843311    0  01


Q ss_pred             CCCccEEEecCcC-cCCCCcceEEEEcc-cccccCCCccc
Q 017640          258 GLDADFLVASSHK-MCGPTGIGFLFGKS-DLLSAMPPFLG  295 (368)
Q Consensus       258 ~~~~d~~~~s~~K-~~g~~G~G~l~~~~-~li~~l~~~~~  295 (368)
                      .-..|+++-|.-| ++-|-|.++++... ..+..+...+.
T Consensus       211 ~GRvda~vqS~dkNF~VPvGgai~As~~~~~i~~vs~~Yp  250 (389)
T PF05889_consen  211 VGRVDAFVQSTDKNFMVPVGGAIMASFDPSGILAVSKEYP  250 (389)
T ss_dssp             HSTCSEEEEEHHHHHCEESSHEEEEESSHHHHHHHHHTSH
T ss_pred             cCCcceeeeecCCCEEecCCCcEEEecCHHHHHHHHHHhh
Confidence            1146777777778 55566766666544 45555444443

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]

Probab=98.64  E-value=5.6e-07  Score=79.23  Aligned_cols=227  Identities=12%  Similarity=0.086  Sum_probs=133.5

Q ss_pred             HHHHHHHHHH-cCCCCC----CcE--EEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCC-EE
Q 017640          114 ELARKKVAAF-INASDS----GEI--VFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGA-NL  185 (368)
Q Consensus       114 ~~~r~~la~~-~~~~~~----~~v--~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~-~v  185 (368)
                      ..++...+++ +|.+++    +.+  +-+-|+|.|+...+.-+..  +-+...|.+++|.+...    ..+++..|. ++
T Consensus        77 ~~F~~~A~el~lg~~s~a~kE~Rv~~vQslsGTGAl~~~A~Fl~~--~~~~~~VY~SnPTW~nH----~~if~~aGf~tv  150 (410)
T KOG1412|consen   77 PTFTKAATELLLGADSPAIKEDRVFGVQSLSGTGALRIAADFLAT--FYNKNTVYVSNPTWENH----HAIFEKAGFTTV  150 (410)
T ss_pred             hhhhhhhHHHhcCCCchhhhhccccceeeccccchhhhhHHHHHH--hcccceeEecCCchhHH----HHHHHHcCCcee
Confidence            3455545544 455421    232  4455778889888876632  34566899999966664    444455583 44


Q ss_pred             EEEeCC--CCCCCCHHHHHHhcccCc--eEEEEccc-ccccccccC---HHHHHHHHHhcCCEEEEecCCc-CCcccccC
Q 017640          186 KFLNLN--DDESPDLDKLKEMLSRKT--KLVVIHHI-SNMLASILP---IEEIVHWSHDVGAKVLVDACQS-VPHMVVDV  256 (368)
Q Consensus       186 ~~v~~~--~~~~~d~~~l~~~l~~~~--~~v~~~~~-~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~-~~~~~~~~  256 (368)
                      ...+.=  ++-.+|++.+...|+..|  .++++..| +||||.-..   +.+|++..++++.+.++|-+|- +..-.++-
T Consensus       151 ~~Y~yWd~~~k~~d~e~~Lsdl~~APe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~  230 (410)
T KOG1412|consen  151 ATYPYWDAENKCVDLEGFLSDLESAPEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDA  230 (410)
T ss_pred             eeeeeecCCCceecHHHHHHHHhhCCCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccc
Confidence            444432  345679998888886544  56666766 999998876   5677777888999999999954 33333333


Q ss_pred             CCC--------Cc-cEEEecCcCcCCCCc--ceEEE---EcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCC
Q 017640          257 QGL--------DA-DFLVASSHKMCGPTG--IGFLF---GKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTP  322 (368)
Q Consensus       257 ~~~--------~~-d~~~~s~~K~~g~~G--~G~l~---~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~  322 (368)
                      +.+        +. -|++-||.|.||..+  +|-+-   -++..+..+...+.=                 ..|.+...|
T Consensus       231 DawAiR~fV~~g~e~fv~QSFaKNfGlYneRvGnltvv~~n~a~i~~v~SQl~l-----------------viR~~~SNP  293 (410)
T KOG1412|consen  231 DAWAIRYFVEQGFELFVCQSFAKNFGLYNERVGNLTVVVNNPAVIAGVKSQLTL-----------------VIRSNWSNP  293 (410)
T ss_pred             cHHHHHHHHhcCCeEEEEhhhhhhcccccccccceEEEecChhHHHHHHHHHHH-----------------HHhhccCCC
Confidence            222        33 356669999988776  55543   244444443322210                 011111122


Q ss_pred             CHHHHHHHHHHHH---HHHHh--CHHHHHHHHHHHHHHHHHHHHhh
Q 017640          323 AIGEAIGLGAAID---YLSTI--GMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       323 ~~~~~~a~~~al~---~~~~~--g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +..+.--.+..|.   +.+++  .++.+.-|+.+++..+++.|..+
T Consensus       294 PAyGArIV~kvL~tP~lre~W~~sik~MssRI~~MR~aLrd~L~aL  339 (410)
T KOG1412|consen  294 PAYGARIVHKVLSTPELREQWIQSIKTMSSRIKKMRTALRDHLVAL  339 (410)
T ss_pred             cchhhHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            2221111221111   12221  47888899999999999988765

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=98.56  E-value=3.9e-07  Score=87.32  Aligned_cols=278  Identities=14%  Similarity=0.134  Sum_probs=168.9

Q ss_pred             EeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHH
Q 017640           70 YLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS  148 (368)
Q Consensus        70 ~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~  148 (368)
                      |++-+.+. ..|+.+..-+.+.-..+..+... ....+++-.+.+-..+..++++.|.+-. +--+..-+|.|-+.+..+
T Consensus       122 fIGmGYyn~~vP~~I~RNilenp~W~TqYTPY-Q~EIsQGRLEsllNyQTmi~dlTGL~~a-NASLLDEgTAaaEAm~l~  199 (1001)
T KOG2040|consen  122 FIGMGYYNTHVPAVILRNILENPGWYTQYTPY-QAEISQGRLESLLNYQTMITDLTGLPMA-NASLLDEGTAAAEAMALC  199 (1001)
T ss_pred             hhccccccccCcHHHHHHhhhCCcceeccCCC-chhhhhhhHHHHhhhHHhhhhccCCccc-chhhhccchhHHHHHHHH
Confidence            34444444 55666655554433322222111 1223444556666788899999999854 444444445555555555


Q ss_pred             ccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHH
Q 017640          149 WGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIE  228 (368)
Q Consensus       149 ~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~  228 (368)
                      .   ...++.++++...+|+.+..-.+.-++..|++++..+        +.+.. ...++...+.+..|.+ -|.+.+..
T Consensus       200 ~---~~~krkk~vvd~~~hpqtlsV~~TRa~~~~i~v~~~~--------~~~~~-~s~~~v~gvlvQYP~t-~G~i~d~~  266 (1001)
T KOG2040|consen  200 N---RINKRKKFVVDSNCHPQTLSVVKTRAKGFGIKVVVSD--------IKEAD-YSSKDVSGVLVQYPDT-EGSVLDFD  266 (1001)
T ss_pred             H---hhcccceEEecCCCCcchhhhhhccccccceeEEecC--------HHHhh-ccccceeEEEEEcCCC-CCcccCHH
Confidence            5   3667778999999999987766666665666644333        22211 1123456677777654 68999999


Q ss_pred             HHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCc---CCCCc--ceEEEEcccccccCCCcccCCcceeec
Q 017640          229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKM---CGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDV  303 (368)
Q Consensus       229 ~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~---~g~~G--~G~l~~~~~li~~l~~~~~g~~~~~~~  303 (368)
                      ++++.+++.|.++++-.---.-.+.-...+++.|+.++|.+.+   +|..|  .||+.+++++.+.+...+.|.+-...-
T Consensus       267 el~~~a~~~~s~vv~atDLLaLtiLrpPgefGaDIavGSsQRFGVPlGYGGPHAaFfAv~~~l~R~mPGRiiGvtkD~~g  346 (1001)
T KOG2040|consen  267 ELVELAHANGSLVVMATDLLALTILRPPGEFGADIAVGSSQRFGVPLGYGGPHAAFFAVSESLVRMMPGRIIGVTKDALG  346 (1001)
T ss_pred             HHHHHhhccCceEEEeehhhHHHccCChhhcCceeeeccccccCccccCCCchHHHHHHHHHHHhhCCCceEeeeecccc
Confidence            9999999999876642111111111134567999999999985   23333  899999999988887776654321100


Q ss_pred             ccCC---CCCCCCCCCCCCCCCCHHHHHHHHHHHH-----HHHHhCHHHHHHHHHHHHHHHHHHHHh
Q 017640          304 FLDH---STFADPPSRFEAGTPAIGEAIGLGAAID-----YLSTIGMQKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       304 ~~~~---~~~~~~~~~~~~gt~~~~~~~a~~~al~-----~~~~~g~~~i~~~~~~l~~~l~~~l~~  362 (368)
                      ...+   ..-.+.+-|.+-.|.|+...-|+.+-+.     ++...|++.|.+|+..+...+...|++
T Consensus       347 k~a~RLALQTREQHIrRDKATSNICTAQALLANmaAmyaiYHGp~gL~~IArrvh~~T~~l~~~l~~  413 (1001)
T KOG2040|consen  347 KEAYRLALQTREQHIRRDKATSNICTAQALLANMAAMYAIYHGPHGLKEIARRVHNLTLILAEGLKN  413 (1001)
T ss_pred             cHHHHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence            0000   0001233456667888876555443332     233448999999999999999988874

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=98.50  E-value=1e-05  Score=72.85  Aligned_cols=200  Identities=18%  Similarity=0.169  Sum_probs=128.4

Q ss_pred             CCeEEecc---CCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHH
Q 017640           66 KKLVYLDN---AATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI  142 (368)
Q Consensus        66 ~~~i~l~~---~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~  142 (368)
                      .+-+++|-   .+++.++..+..++-+--+.+.++             .....+++++.+.||..   .++.|.-+..|=
T Consensus        44 Sedv~IDLLTDSGTgams~~qwaamm~GDEAYags-------------rs~~~L~~avkdifGfq---~~iPthQGRgAE  107 (471)
T COG3033          44 SEDVFIDLLTDSGTGAMTDKQWAAMMRGDEAYAGS-------------RSYYALADAVKDIFGFQ---YTIPTHQGRGAE  107 (471)
T ss_pred             ccceEEEeeccCCcccccHHHHHHHhccchhhccc-------------ccHHHHHHHHHHhcCce---eeeeccCCccHH
Confidence            33455554   455678888777776544443222             12227888888999974   667776555555


Q ss_pred             HHHHHHcc-CCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC----------CCCCCHHHHHHhccc----
Q 017640          143 NLVAYSWG-LSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND----------DESPDLDKLKEMLSR----  207 (368)
Q Consensus       143 ~~~~~~~~-~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~----------~~~~d~~~l~~~l~~----  207 (368)
                      +.++..+. .....||.+.++++..|+.+.   +...+..|+.++-++.++          .|.+|++.|++.|++    
T Consensus       108 ~Il~~i~ik~~~~~pg~~~~~~sN~~FdTT---r~h~~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~  184 (471)
T COG3033         108 NILIPILIKKGEQEPGSKMVAFSNYHFDTT---RGHIQINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGAD  184 (471)
T ss_pred             HHHHHHHhhhccccCCccccccccceecch---hHHHHhcCCccccccccccccccccCCCCCccCHHHHHHHHHHhCcc
Confidence            55544441 112345667777777777654   444556788888777663          268899999999975    


Q ss_pred             CceEEEEcccc-cccccccC---HHHHHHHHHhcCCEEEEecCCc------C-----CcccccCCC------CCccEEEe
Q 017640          208 KTKLVVIHHIS-NMLASILP---IEEIVHWSHDVGAKVLVDACQS------V-----PHMVVDVQG------LDADFLVA  266 (368)
Q Consensus       208 ~~~~v~~~~~~-n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~------~-----~~~~~~~~~------~~~d~~~~  266 (368)
                      +...|+++-.+ +-.|+-.+   ++++.++|++|++.++.|.+--      +     +...+.+.+      ..+|-.+.
T Consensus       185 nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~m  264 (471)
T COG3033         185 NVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTM  264 (471)
T ss_pred             cCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhhee
Confidence            44555544443 44555555   7899999999999999999832      1     111111111      24788999


Q ss_pred             cCcC-cCCCCcceEEEEccc
Q 017640          267 SSHK-MCGPTGIGFLFGKSD  285 (368)
Q Consensus       267 s~~K-~~g~~G~G~l~~~~~  285 (368)
                      |..| .+..-| |++..+++
T Consensus       265 S~KKD~lvnmG-Gfl~~~D~  283 (471)
T COG3033         265 SAKKDGLVNMG-GFLCFKDD  283 (471)
T ss_pred             eccccceeccc-cEEEecCc
Confidence            9999 566665 89998887

>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]

Probab=98.48  E-value=1.8e-06  Score=75.71  Aligned_cols=261  Identities=13%  Similarity=0.125  Sum_probs=151.6

Q ss_pred             CeEEeccCC----CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHH
Q 017640           67 KLVYLDNAA----TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI  142 (368)
Q Consensus        67 ~~i~l~~~~----~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~  142 (368)
                      +--|||.-.    .+.+.|+|.++....+.....|.- ..      ..++.+-.+...+.+=+++   .++|++++++|+
T Consensus        46 g~~yLDCInNVaHvghchp~VV~A~~kQmat~~tN~R-Fl------hd~lv~cA~~l~stlPeLs---vc~F~NSGSEAN  115 (452)
T KOG1403|consen   46 GTRYLDCINNVAHVGHCHPEVVRAGAKQMATISTNNR-FL------HDELVQCARTLTSTLPELS---VCFFVNSGSEAN  115 (452)
T ss_pred             cccHHHHhhhhhhcccCCHHHHHHHHHHHhHhcccch-hh------HHHHHHHHHHHhhcCCCce---EEEEecCCchhh
Confidence            334555422    457899999999888877655431 11      1344444555555444443   678999999999


Q ss_pred             HHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHH-----cC-CEEEEEeC--CCC---CC--------CC-----H
Q 017640          143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK-----TG-ANLKFLNL--NDD---ES--------PD-----L  198 (368)
Q Consensus       143 ~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~-----~g-~~v~~v~~--~~~---~~--------~d-----~  198 (368)
                      .++++..+  ...+.+-+++.+..|++.......+...     .+ .++.+|-+  -+|   |.        -|     .
T Consensus       116 DLALRLAR--~ftkhqDvItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~~a~~~~~Ya  193 (452)
T KOG1403|consen  116 DLALRLAR--NFTKHQDVITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDADMGALYA  193 (452)
T ss_pred             HHHHHHHH--hhcccCceEEEechhccceeeeeeccceeccCCCCcCCCceeEecCCccccccccccccCCcccchhhhh
Confidence            99999653  2445555677777888765443332110     11 12222221  121   10        01     1


Q ss_pred             HHHHHhccc------CceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc-----cccCCCCCcc
Q 017640          199 DKLKEMLSR------KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM-----VVDVQGLDAD  262 (368)
Q Consensus       199 ~~l~~~l~~------~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~-----~~~~~~~~~d  262 (368)
                      +.+++.+.+      ...+++.++-++-.|+++|    .+++++..|.+|-+.|.|++|. +|.+     .+....+-+|
T Consensus       194 d~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPD  273 (452)
T KOG1403|consen  194 DPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFIPD  273 (452)
T ss_pred             hHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhhhhhhhccccc
Confidence            233333322      3456677777788999998    7899999999999999999986 3332     1122234577


Q ss_pred             EEEecCcCcCC-CCcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC
Q 017640          263 FLVASSHKMCG-PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG  341 (368)
Q Consensus       263 ~~~~s~~K~~g-~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g  341 (368)
                      +++..  |-.| +..++.++..+++.+.+...-.                   .-|.....|..   +.+.++..++...
T Consensus       274 IVtmg--KpmGNGhPVa~VattkeIA~Af~atgv-------------------~YFNTyGGnPV---sCAv~laVm~v~e  329 (452)
T KOG1403|consen  274 IVTMG--KPMGNGHPVAAVATTKEIAQAFHATGV-------------------EYFNTYGGNPV---SCAVGLAVMRVCE  329 (452)
T ss_pred             hheec--ccCCCCCeeeEEeccHHHHHHhccccc-------------------eehhccCCCch---hHHHHHHHHHHHh
Confidence            77765  8544 5558999999988765542211                   11221112222   2333334344434


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Q 017640          342 MQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       342 ~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      -+.+.++..+.-.++...|++.
T Consensus       330 ~E~Lq~ha~~vG~~L~~lL~~~  351 (452)
T KOG1403|consen  330 DENLQEHAQQVGEKLEVLLRRL  351 (452)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHH
Confidence            4677778777777777777654

>PLN02994 1-aminocyclopropane-1-carboxylate synthase

Probab=98.21  E-value=1.9e-05  Score=64.41  Aligned_cols=94  Identities=11%  Similarity=0.085  Sum_probs=60.1

Q ss_pred             CCeEEeccCCCCCCcHHHHHHHHHH--------------HHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcC--CC-C
Q 017640           66 KKLVYLDNAATSQKPIAVLKALQNY--------------YEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN--AS-D  128 (368)
Q Consensus        66 ~~~i~l~~~~~~~~~~~v~~a~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~--~~-~  128 (368)
                      .++|.|+-+.+.+..+.+...+.+.              ......+.      ...+..+..+.+.+.+.+.+|  .+ .
T Consensus        43 ~G~I~lg~aEN~l~~dli~~~i~~~p~~d~~~~~~i~~~~~~~a~Y~------~~~G~~~lR~AiA~~l~~~~g~~v~~~  116 (153)
T PLN02994         43 QGIIQMGLAENQLCSDLIEEWIEENPHADICTAEGTIDSFKDIALFQ------DYHGLANFRKAIANFMAEARGGRVKFD  116 (153)
T ss_pred             CceEeeehhhhHhHHHHHHHHHhCCCccccCCcHHHHHHHHHHhcCC------CCCCcHHHHHHHHHHHHHHhCCCCccc
Confidence            7899999998766555444444331              11110010      011123344444444545545  22 2


Q ss_pred             CCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcc
Q 017640          129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHS  169 (368)
Q Consensus       129 ~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s  169 (368)
                      +++|++|+|+++++..++.++    +++||.|++.+|.|++
T Consensus       117 pd~Ivvt~Ga~~al~~l~~~l----~dpGD~VlVp~P~Y~~  153 (153)
T PLN02994        117 ADMIVLSAGATAANEIIMFCI----ADPGDAFLVPTPYYAA  153 (153)
T ss_pred             hhheEEcCCHHHHHHHHHHHH----cCCCCEEEEeCCCCCC
Confidence            349999999999999999998    8999999999998864

>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]

Probab=98.19  E-value=2.5e-05  Score=69.97  Aligned_cols=201  Identities=16%  Similarity=0.099  Sum_probs=122.9

Q ss_pred             CCeEEeccCCCC------CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc-CCCC----CCcEE-
Q 017640           66 KKLVYLDNAATS------QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI-NASD----SGEIV-  133 (368)
Q Consensus        66 ~~~i~l~~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~-~~~~----~~~v~-  133 (368)
                      +..++|+.+++-      ...+.|++|-++.+..   +...     .+.....+.++.+.-+++. |...    +..|+ 
T Consensus        52 ~~KiNLgvGaYRdd~gKp~vL~~VrkAE~ql~~~---~ldK-----EYlpI~Gl~eF~k~sakLa~G~~s~~ik~~Ri~t  123 (427)
T KOG1411|consen   52 PKKINLGVGAYRDDNGKPYVLPSVRKAEQQLASL---SLDK-----EYLPITGLAEFNKLSAKLALGDNSPVIKEKRIVT  123 (427)
T ss_pred             cceeeecccceecCCCCeeeeHHHHHHHHHHhhh---cccc-----hhccccchHHHHHHHHHHhhcCCchhhhccceeE
Confidence            455777766532      3566777776555441   1110     1111223345555555554 4432    22443 


Q ss_pred             -EeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC--CCCCCCHHHHHHhcccCc-
Q 017640          134 -FTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDESPDLDKLKEMLSRKT-  209 (368)
Q Consensus       134 -~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~l~~~~-  209 (368)
                       -+-++|.|+......+.  ..-++..|.+++|.+....+.+..    .|..+..+..-  ....+|.+.+.+.+...+ 
T Consensus       124 vQ~lSGTGaLriga~Fl~--~f~~~~~I~ip~PTWgNh~~if~~----ag~~~~~yrYyd~~t~gld~~g~ledl~~~p~  197 (427)
T KOG1411|consen  124 VQTLSGTGALRVGAEFLA--RFYPSRDIYIPDPTWGNHKNIFKD----AGLPVKFYRYYDPKTRGLDFKGMLEDLGEAPE  197 (427)
T ss_pred             EEeccCcchhhHHHHHHH--hhccccceeecCCcccccCccccc----cCcceeeeeeccccccccchHHHHHHHhcCCC
Confidence             33577888888887664  356788999999987775554444    47777555543  345668887777665533 


Q ss_pred             --eEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCc-CCcccccCCC--------CCcc-EEEecCcCcCCC
Q 017640          210 --KLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQS-VPHMVVDVQG--------LDAD-FLVASSHKMCGP  274 (368)
Q Consensus       210 --~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~-~~~~~~~~~~--------~~~d-~~~~s~~K~~g~  274 (368)
                        .+++-...|||||+-..   +++|.++.++.+.+-++|.+|- +..-.++.+.        .+.. +++-|+.|.+|.
T Consensus       198 gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNMGL  277 (427)
T KOG1411|consen  198 GSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMGL  277 (427)
T ss_pred             CcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhcch
Confidence              44445556999998766   6788888999999999999965 2222222221        1333 556699998888


Q ss_pred             Cc--ceEE
Q 017640          275 TG--IGFL  280 (368)
Q Consensus       275 ~G--~G~l  280 (368)
                      .|  +|.+
T Consensus       278 YgERvGa~  285 (427)
T KOG1411|consen  278 YGERVGAL  285 (427)
T ss_pred             hhhcccee
Confidence            77  5554

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=97.77  E-value=2.8e-05  Score=70.12  Aligned_cols=142  Identities=18%  Similarity=0.230  Sum_probs=75.2

Q ss_pred             CCcEEEeCCHHHHHHHHHHHccCCCCCCC--CEEEEcCCCCcccHHHHHHHHHHcC-CEEEEEeCCCCCCCCHHHHHHhc
Q 017640          129 SGEIVFTKNATEAINLVAYSWGLSNLKSG--DEVILTVAEHHSAIVPWQLVAQKTG-ANLKFLNLNDDESPDLDKLKEML  205 (368)
Q Consensus       129 ~~~v~~t~g~t~a~~~~~~~~~~~~~~~g--d~vl~~~~~~~s~~~~~~~~~~~~g-~~v~~v~~~~~~~~d~~~l~~~l  205 (368)
                      +..|+|++|+|+.++.++-++.-.....+  -.|+...|.|++    ++....... ...++--       |...+.+.-
T Consensus        66 gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~----Y~~qt~~f~s~~y~w~G-------da~~~~~~~  134 (363)
T PF04864_consen   66 GRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSS----YPEQTDFFDSRLYKWAG-------DASNFKNSD  134 (363)
T ss_dssp             TSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CH----HHHHCCCT-BTTEEEEE-------ECCCGTT-S
T ss_pred             CcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccc----hHHHHHhccccCccccc-------cHHhhccCC
Confidence            34899999999999999999842201122  257777776555    333222111 1112111       111111111


Q ss_pred             ccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcc-cccCCCCCccEEEecCcCcCCCCc--ceEEEE
Q 017640          206 SRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM-VVDVQGLDADFLVASSHKMCGPTG--IGFLFG  282 (368)
Q Consensus       206 ~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~-~~~~~~~~~d~~~~s~~K~~g~~G--~G~l~~  282 (368)
                      .+.+-+=+++.|+||.|.+  -+.+   ++.-+..+|.|-+|..++. |+.- ..+-|++.+++||.=|=.|  +||.++
T Consensus       135 ~~~~~IElVTSPNNPDG~l--r~~V---~~g~~~k~I~D~AYYWPhyTpI~~-~aD~DiMLFT~SK~TGHAGSR~GWAlV  208 (363)
T PF04864_consen  135 NPSPYIELVTSPNNPDGQL--REAV---LNGSSGKVIHDLAYYWPHYTPITA-PADHDIMLFTLSKLTGHAGSRFGWALV  208 (363)
T ss_dssp             -CCGEEEEEESS-TTT--------S---STTTEEEEEEE-TT-STTTS---S--B--SEEEEEHHHHCS-GGG-EEEEEE
T ss_pred             CCCCeEEEEeCCCCCcccc--cchh---cCCCCcceeeeeeeecccccccCC-CCCCceEEEEEecccCccccccceeee
Confidence            1233455899999999987  2222   2445567899999998876 4433 3578999999999766555  999999


Q ss_pred             ccccc
Q 017640          283 KSDLL  287 (368)
Q Consensus       283 ~~~li  287 (368)
                      +++-+
T Consensus       209 KD~~V  213 (363)
T PF04864_consen  209 KDEEV  213 (363)
T ss_dssp             S-HHH
T ss_pred             cCHHH
Confidence            98644

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>KOG2142 consensus Molybdenum cofactor sulfurase [Coenzyme transport and metabolism]

Probab=97.55  E-value=4.3e-05  Score=73.73  Aligned_cols=279  Identities=18%  Similarity=0.141  Sum_probs=171.7

Q ss_pred             EeccCCCCCCcHHHHHHHHH-HHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCC-CCcEEEeCCHHHHHHHHHH
Q 017640           70 YLDNAATSQKPIAVLKALQN-YYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD-SGEIVFTKNATEAINLVAY  147 (368)
Q Consensus        70 ~l~~~~~~~~~~~v~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~-~~~v~~t~g~t~a~~~~~~  147 (368)
                      |+|++......+...+.... .-.....|||. ....+..........|-++..+++-.. ++.++++. .++|+..++.
T Consensus        23 yldhag~tl~sesq~~g~~~~sq~~e~~nphs-~~~ts~~l~~~v~Q~r~ril~~f~tta~dy~v~lp~-~t~al~~vae  100 (728)
T KOG2142|consen   23 YLDHAGRTLFSESQLEGVAFQSQSSENANPHS-HLGTSRSLARLVAQVRLRILALFNTTAFDYEVSLPA-LTEALKLVAE  100 (728)
T ss_pred             HHHhhhhhhhhhcccchhhhhhhccccCCCcc-cccchHHHHHHHHHHHHHHHHHhccccccccchhHH-HHHHHHHHHH
Confidence            99999888877777766432 22234456663 344444556667777777888887653 34788888 9999999999


Q ss_pred             HccCCCCCCCCEEEEc---CCCCcccHHHHHHHHHHc-CCEEEE-EeCCC---CCCCCHHHHHHhcccCceEEEEccccc
Q 017640          148 SWGLSNLKSGDEVILT---VAEHHSAIVPWQLVAQKT-GANLKF-LNLND---DESPDLDKLKEMLSRKTKLVVIHHISN  219 (368)
Q Consensus       148 ~~~~~~~~~gd~vl~~---~~~~~s~~~~~~~~~~~~-g~~v~~-v~~~~---~~~~d~~~l~~~l~~~~~~v~~~~~~n  219 (368)
                      ++.+  ...+.+|--.   ...|.+..  ...++..+ |+-+.. +...+   ....++.+...-+ ....+.+.....|
T Consensus       101 ~fp~--~s~tekid~lrs~~y~hls~s--~~~~~~~~~~~gl~sy~q~~~i~~~~~~sls~~~~~l-s~~~L~~g~a~~n  175 (728)
T KOG2142|consen  101 AFPF--YSQTEKIDNLRSDEYGHLSSS--GHLMRLDYSGIGLFSYSQTNEISDSEEFSLSESEANL-SEHSLFGGAAQSN  175 (728)
T ss_pred             hCcc--ccccccccchhhhhhcccccc--cceeeeeeeccceEEeeeeeeccccccccccccccCc-ccchhcccchhcc
Confidence            9953  3344333322   22222221  00111111 222221 12221   1111111111111 1346677777778


Q ss_pred             ccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCcc
Q 017640          220 MLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEM  299 (368)
Q Consensus       220 ~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~  299 (368)
                      ..|..+-.+.+-.+.-..+.++++|.+.-..+.+++.+.+.+|+... +.|+||-+. |.+.+..+..+..     |++.
T Consensus       176 feg~kik~ri~d~L~ipe~~y~lldtaSrvSaf~Ldaesy~f~~~~~-lltiFgyet-gAvlv~~r~A~~~-----Ggkt  248 (728)
T KOG2142|consen  176 FEGDKIKLRIMDRLNIPESEYVLLDTASRVSAFPLDAESYPFDFNPK-LLTIFGYET-GAVLVMNRSAELK-----GGKT  248 (728)
T ss_pred             cccceeeeeeecccccCCceEEEEEeecccccccchHhhCCCcccch-heeecCCCc-hhhHHHhhhhHhh-----cCcc
Confidence            88876443333333335678999999999999999999999999999 999999665 5555544433222     5555


Q ss_pred             eeecccCCCCC---CCCCCCCCCCCCCHHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHh
Q 017640          300 ISDVFLDHSTF---ADPPSRFEAGTPAIGEAIGLGAAIDYLSTI--GMQKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       300 ~~~~~~~~~~~---~~~~~~~~~gt~~~~~~~a~~~al~~~~~~--g~~~i~~~~~~l~~~l~~~l~~  362 (368)
                      ..+.+.-..-+   .....||+.|+.+...++++...+......  ++..+..+...++++.+..|..
T Consensus       249 ~sa~f~wp~~~l~s~~lkkr~e~gk~~~kd~a~gl~vFp~~sRvtG~~ysy~wmt~al~~~whvlLda  316 (728)
T KOG2142|consen  249 ASAEFSWPMLYLLSEKLKKRFEDGKLRFKDIAQGLFVFPTQSRVTGGMYSYSWMTLALANNWHVLLDA  316 (728)
T ss_pred             ceeecccchHHHHHHHHHHHHhhccccccchhhheeccchHhhhcccchhHHHHHHHHhhhHHHHHhh
Confidence            44433221111   235578999999999999988888877765  6788888888888888888764

>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]

Probab=97.01  E-value=0.0024  Score=55.57  Aligned_cols=181  Identities=14%  Similarity=0.128  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHHcCCCCCCcEEEeCCHH-HHHHHHHHHccCCCCCCCC-EEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          112 EYELARKKVAAFINASDSGEIVFTKNAT-EAINLVAYSWGLSNLKSGD-EVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       112 ~~~~~r~~la~~~~~~~~~~v~~t~g~t-~a~~~~~~~~~~~~~~~gd-~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      ...++...+..+.|...-.+.++++=+| .++.+.+.+++.  -+|.- .|+-...+..|.+..+..    .|.+++.+.
T Consensus        58 isne~a~~~i~l~glhav~nc~vvpl~tgmslslc~~s~r~--krpkakyiiw~ridqks~~ksi~~----agfepiiie  131 (432)
T KOG3843|consen   58 ISNEFAKDAIHLAGLHAVANCFVVPLATGMSLSLCFLSLRH--KRPKAKYIIWLRIDQKSCFKSIIH----AGFEPIIIE  131 (432)
T ss_pred             HHHHHHHHHHHHhhhhhhhceeEEeccccccHHHHHHHHhh--cCCcccEEEEEecchHHHHHHHHh----cCCCceeee
Confidence            3345555566677766322333332221 356666666642  34443 455555555554433333    388877776


Q ss_pred             CCCCC---CCCHHHHHHhccc-Cce-EEEEcccccccccccC--HHHHHHHHHhcCCEEEEecCCcCCcccc------cC
Q 017640          190 LNDDE---SPDLDKLKEMLSR-KTK-LVVIHHISNMLASILP--IEEIVHWSHDVGAKVLVDACQSVPHMVV------DV  256 (368)
Q Consensus       190 ~~~~~---~~d~~~l~~~l~~-~~~-~v~~~~~~n~tG~~~~--l~~i~~l~~~~g~~li~D~a~~~~~~~~------~~  256 (368)
                      .-.++   .-|++.+++.+++ ... ++|+...++-..-..|  +++|+.+|..|+++-++..+|++.....      ..
T Consensus       132 ~i~d~d~l~tdleav~~~iee~g~dcilci~sttscfapr~pd~leaiaaica~~diphivnnayglqsee~i~~iaa~~  211 (432)
T KOG3843|consen  132 NILDGDELITDLEAVEAIIEELGEDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQSEECIHKIAAAA  211 (432)
T ss_pred             ccccchHHHHhHHHHHHHHHHhCCceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhccccccchHHHHHHHHHHh
Confidence            54332   3378888888765 233 3344333322222333  9999999999999999999999765411      01


Q ss_pred             CCCCccEEEecCcCcC-CCCcceEEE-EcccccccCCCcccCCc
Q 017640          257 QGLDADFLVASSHKMC-GPTGIGFLF-GKSDLLSAMPPFLGGGE  298 (368)
Q Consensus       257 ~~~~~d~~~~s~~K~~-g~~G~G~l~-~~~~li~~l~~~~~g~~  298 (368)
                      +--..|.++-|+-|.| -|-|.+++. .++.+|..+.+.++|..
T Consensus       212 ~~grida~vqsldknf~vpvggaiia~fk~n~iq~iak~ypgra  255 (432)
T KOG3843|consen  212 ECGRIDAFVQSLDKNFMVPVGGAIIAAFKDNFIQEIAKMYPGRA  255 (432)
T ss_pred             hhccHHHHHHHhhhcceeecchhHhhHhHHHHHHHHHHhCCCcc
Confidence            1124788999999955 466645443 46777777777666533

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=96.99  E-value=0.067  Score=48.79  Aligned_cols=85  Identities=13%  Similarity=0.214  Sum_probs=57.7

Q ss_pred             CHHHHHHhccc------CceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCcCCcc--------cccCCC
Q 017640          197 DLDKLKEMLSR------KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQSVPHM--------VVDVQG  258 (368)
Q Consensus       197 d~~~l~~~l~~------~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~~~~~--------~~~~~~  258 (368)
                      .++++|+.|.+      ...+++++.+++..|--.-    ++.|.++|++||+.+|+|++|.-|..        .++++ 
T Consensus       254 Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~-  332 (484)
T KOG1405|consen  254 CLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLD-  332 (484)
T ss_pred             HHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCC-
Confidence            35566666643      2478899999999887654    88999999999999999999874321        23333 


Q ss_pred             CCccEEEecCcCcCCCCcceEEEEccccc
Q 017640          259 LDADFLVASSHKMCGPTGIGFLFGKSDLL  287 (368)
Q Consensus       259 ~~~d~~~~s~~K~~g~~G~G~l~~~~~li  287 (368)
                      ..+|++++|  |-|-..|   .+-+++++
T Consensus       333 ~PpD~vTFS--KK~q~gG---ffh~~~fr  356 (484)
T KOG1405|consen  333 SPPDVVTFS--KKFQTGG---FFHDEEFR  356 (484)
T ss_pred             CCccceehh--hhhhcCc---cccCcccC
Confidence            247888776  7444333   34455543

>KOG2142 consensus Molybdenum cofactor sulfurase [Coenzyme transport and metabolism]

Probab=90.97  E-value=0.13  Score=50.55  Aligned_cols=170  Identities=19%  Similarity=0.168  Sum_probs=112.8

Q ss_pred             HHHHHHHHcCCCCCC-cEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcc-cHHHHHHHHHHcCCEEEEEeCC-C
Q 017640          116 ARKKVAAFINASDSG-EIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHS-AIVPWQLVAQKTGANLKFLNLN-D  192 (368)
Q Consensus       116 ~r~~la~~~~~~~~~-~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s-~~~~~~~~~~~~g~~v~~v~~~-~  192 (368)
                      ++..+..+++.+..+ -+++|.+-..+..+.+.+.+   .+-... ++.--+|++ ...-....++..|+++.-.-.. +
T Consensus       181 ik~ri~d~L~ipe~~y~lldtaSrvSaf~Ldaesy~---f~~~~~-lltiFgyetgAvlv~~r~A~~~Ggkt~sa~f~wp  256 (728)
T KOG2142|consen  181 IKLRIMDRLNIPESEYVLLDTASRVSAFPLDAESYP---FDFNPK-LLTIFGYETGAVLVMNRSAELKGGKTASAEFSWP  256 (728)
T ss_pred             eeeeeecccccCCceEEEEEeecccccccchHhhCC---Ccccch-heeecCCCchhhHHHhhhhHhhcCccceeecccc
Confidence            777888888887554 55888888889999998873   332222 433334443 2222344555567665443333 2


Q ss_pred             CCCCCHHHHHHhcccCc--------eEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccc---cCCCCCc
Q 017640          193 DESPDLDKLKEMLSRKT--------KLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVV---DVQGLDA  261 (368)
Q Consensus       193 ~~~~d~~~l~~~l~~~~--------~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~---~~~~~~~  261 (368)
                      ...+--++|++.+...+        .+.+++...-.||..+++.++ .++.+.+++++.|.-+- |...+   ....+.+
T Consensus       257 ~~~l~s~~lkkr~e~gk~~~kd~a~gl~vFp~~sRvtG~~ysy~wm-t~al~~~whvlLda~~l-G~kdmd~yglS~f~P  334 (728)
T KOG2142|consen  257 MLYLLSEKLKKRFEDGKLRFKDIAQGLFVFPTQSRVTGGMYSYSWM-TLALANNWHVLLDALAL-GPKDMDSYGLSLFQP  334 (728)
T ss_pred             hHHHHHHHHHHHHhhccccccchhhheeccchHhhhcccchhHHHH-HHHHhhhHHHHHhhhcc-CcchHhhhhhhccCc
Confidence            23333456666665422        356788888889999999877 67888889999998765 33222   2334569


Q ss_pred             cEEEecCcCcCC---CCcceEEEEcccccccCC
Q 017640          262 DFLVASSHKMCG---PTGIGFLFGKSDLLSAMP  291 (368)
Q Consensus       262 d~~~~s~~K~~g---~~G~G~l~~~~~li~~l~  291 (368)
                      |+...++.+.||   |.|.|++.+++..+-.+.
T Consensus       335 dfqg~sf~fv~g~d~psgfGcl~VkKs~i~~l~  367 (728)
T KOG2142|consen  335 DFQGPSFYFVFGRDDPSGFGCLEVKKSAISGLE  367 (728)
T ss_pred             cceeeeEEEEeccCCCCceeeeeeehhhhhcee
Confidence            999999999887   556999999987766554

>TIGR03573 WbuX N-acetyl sugar amidotransferase

Probab=82.71  E-value=21  Score=33.33  Aligned_cols=122  Identities=7%  Similarity=0.018  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHcCCCC--CCcEEEeCCHHHHHHHHHHHccCCCCCCCCEE-EEcCCCCcccHH--HHHHHHHHcCCEEEE
Q 017640          113 YELARKKVAAFINASD--SGEIVFTKNATEAINLVAYSWGLSNLKSGDEV-ILTVAEHHSAIV--PWQLVAQKTGANLKF  187 (368)
Q Consensus       113 ~~~~r~~la~~~~~~~--~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~v-l~~~~~~~s~~~--~~~~~~~~~g~~v~~  187 (368)
                      .+++++.+.++-+...  -+.|+-.+||-.+..++.....  ..+ -+.+ +..++.+.+-..  ....+++..|++...
T Consensus        42 ~~~l~~l~~~~k~~~~~~yD~iV~lSGGkDSs~la~ll~~--~~g-l~~l~vt~~~~~~~e~~~~n~~~~~~~lgvd~~~  118 (343)
T TIGR03573        42 EKELEELVDKIKKKGGGRYDCIIGVSGGKDSTYQAHVLKK--KLG-LNPLLVTVDPGWNTELGVKNLNNLIKKLGFDLHT  118 (343)
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHHH--HhC-CceEEEEECCCCCCHHHHHHHHHHHHHcCCCeEE
Confidence            3345555554443322  2355666888776666533210  011 1223 455665553222  567778888999888


Q ss_pred             EeCCCCCCCCHHHHHHhcccCceEEEEcccccccccc--cCHHHHHHHHHhcCCEEEEecCCc
Q 017640          188 LNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI--LPIEEIVHWSHDVGAKVLVDACQS  248 (368)
Q Consensus       188 v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~--~~l~~i~~l~~~~g~~li~D~a~~  248 (368)
                      +.++      .+.+........+     +..+|...+  .....+.++|+++|+.+|+.+.++
T Consensus       119 i~~d------~~~~~~l~~~~~~-----~~~~pc~~c~~~~~~~l~~~A~~~gi~~Il~G~~~  170 (343)
T TIGR03573       119 ITIN------PETFRKLQRAYFK-----KVGDPEWPQDHAIFASVYQVALKFNIPLIIWGENI  170 (343)
T ss_pred             EeCC------HHHHHHHHHHHHh-----ccCCCchhhhhHHHHHHHHHHHHhCCCEEEeCCCH
Confidence            8764      3333322211111     111221111  125678899999999999998865

This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	368
1t3i_A	420	Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE De		1e-108
1jf9_A	408	Crystal Structure Of Selenocysteine Lyase Length =		4e-74
1kmj_A	406	E. Coli NifsCSDB PROTEIN AT 2.0A WITH THE CYSTEINE		4e-74
1i29_A	406	Crystal Structure Of Csdb Complexed With L-Propargy		4e-74
1c0n_A	406	Csdb Protein, Nifs Homologue Length = 406		7e-72
4eb5_A	382	A. Fulgidus Iscs-Iscu Complex Structure Length = 38		4e-23
1ecx_A	384	Nifs-Like Protein Length = 384		5e-17
1eg5_A	384	Nifs-like Protein Length = 384		4e-16
3lvj_A	423	Crystal Structure Of E.Coli Iscs-Tusa Complex (Form		6e-16
1p3w_B	404	X-Ray Crystal Structure Of E. Coli Iscs Length = 40		2e-15
3cai_A	406	Crystal Structure Of Mycobacterium Tuberculosis Rv3		3e-14
1elq_A	390	Crystal Structure Of The Cystine C-S Lyase C-Des Le		7e-14
1n2t_A	386	C-Des Mutant K223a With Gly Covalenty Linked To The		1e-12
3vax_A	400	Crytal Structure Of Dnda From Streptomyces Lividans		5e-11
3gzd_A	440	Human Selenocysteine Lyase, P1 Crystal Form Length		5e-09
3gzc_A	440	Structure Of Human Selenocysteine Lyase Length = 44		5e-09
3a9x_A	432	Crystal Structure Of Rat Selenocysteine Lyase Lengt		8e-09
2w8w_A	427	N100y Spt With Plp-Ser Length = 427		2e-06
2jgt_A	422	Low Resolution Structure Of Spt Length = 422		2e-06
2w8j_A	427	Spt With Plp-Ser Length = 427		2e-06
2w8u_A	427	Spt With Plp, N100y Length = 427		7e-06
2jg2_A	422	High Resolution Structure Of Spt With Plp Internal		7e-06
1qz9_A	416	The Three Dimensional Structure Of Kynureninase Fro		8e-06
2w8t_A	427	Spt With Plp, N100c Length = 427		8e-06
2w8v_A	427	Spt With Plp, N100w Length = 427		9e-06
1cs1_A	386	Cystathionine Gamma-Synthase (Cgs) From Escherichia		9e-04

>pdb|1T3I|A Chain A, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE Desulfurase From Synechocystis Pcc 6803 Length = 420

Iteration: 1
 Score =  386 bits (992), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/305 (61%), Positives = 224/305 (73%), Gaps = 1/305 (0%)
Query: 47  LGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLS 106
           L    R DFPIL+QE+ G   LVYLDNAATSQKP AVL+ L +YYE  N+NVHRG H LS
Sbjct: 9   LAATVRQDFPILNQEING-HPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLS 67
Query: 107 AKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAE 166
            +ATD YE  R KVA FINA    EIV+T+NATEAINLVAYSWG++NLK+GDE+I TV E
Sbjct: 68  VRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVME 127
Query: 167 HHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILP 226
           HHS +VPWQ+VA KTGA LKF+ L++ ES DL+  K +LS KTKLV + HISN L  + P
Sbjct: 128 HHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNP 187
Query: 227 IEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDL 286
            EEI   +H  GAKVLVDACQS PH  +DVQ +D D+LVAS HKMC PTGIGFL+GK ++
Sbjct: 188 AEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEEI 247
Query: 287 LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPXXXXXXXXXXXXDYLSTIGMQKIH 346
           L AMPPF GGGEMI++VF DH T  + P +FEAGTP            DYL+ +GM+ IH
Sbjct: 248 LEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIH 307
Query: 347 AYEVK 351
            YEV+
Sbjct: 308 NYEVE 312

>pdb|1JF9|A Chain A, Crystal Structure Of Selenocysteine Lyase Length = 408

Iteration: 1
 Score =  275 bits (702), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 140/299 (46%), Positives = 192/299 (64%), Gaps = 2/299 (0%)
Query: 52  RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
           R DFP+L +EV G   L YLD+AA++QKP  V+ A   +Y    + VHRGIH LSA+AT+
Sbjct: 11  RADFPVLSREVNG-LPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATE 69
Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
           + E  RK+ + FINA  + E+VF +  TE INLVA SWG SN+++GD +I++  EHH+ I
Sbjct: 70  KMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANI 129
Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
           VPWQ++  + GA L+ + LN D +  L+ L  +   KT+L+ I H+SN+L +  P+ E++
Sbjct: 130 VPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMI 189
Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
             +H  GAKVLVD  Q+V H  VDVQ LD DF V S HK+ GPTGIG L+ K  LL  MP
Sbjct: 190 TLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMP 249
Query: 292 PFLGGGEMISDVFL-DHSTFADPPSRFEAGTPXXXXXXXXXXXXDYLSTIGMQKIHAYE 349
           P+ GGG MI+ V L + +T+   P RFEAGTP            +Y+S +G+  I  YE
Sbjct: 250 PWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYE 308

>pdb|1KMJ|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.0A WITH THE CYSTEINE PERSULFIDE Intermediate (Residue Css). Length = 406

Iteration: 1
 Score =  275 bits (702), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 140/299 (46%), Positives = 192/299 (64%), Gaps = 2/299 (0%)
Query: 52  RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
           R DFP+L +EV G   L YLD+AA++QKP  V+ A   +Y    + VHRGIH LSA+AT+
Sbjct: 9   RADFPVLSREVNG-LPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATE 67
Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
           + E  RK+ + FINA  + E+VF +  TE INLVA SWG SN+++GD +I++  EHH+ I
Sbjct: 68  KMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANI 127
Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
           VPWQ++  + GA L+ + LN D +  L+ L  +   KT+L+ I H+SN+L +  P+ E++
Sbjct: 128 VPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMI 187
Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
             +H  GAKVLVD  Q+V H  VDVQ LD DF V S HK+ GPTGIG L+ K  LL  MP
Sbjct: 188 TLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMP 247
Query: 292 PFLGGGEMISDVFL-DHSTFADPPSRFEAGTPXXXXXXXXXXXXDYLSTIGMQKIHAYE 349
           P+ GGG MI+ V L + +T+   P RFEAGTP            +Y+S +G+  I  YE
Sbjct: 248 PWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYE 306

>pdb|1I29|A Chain A, Crystal Structure Of Csdb Complexed With L-Propargylglycine Length = 406

Iteration: 1
 Score =  275 bits (702), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 140/299 (46%), Positives = 192/299 (64%), Gaps = 2/299 (0%)
Query: 52  RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
           R DFP+L +EV G   L YLD+AA++QKP  V+ A   +Y    + VHRGIH LSA+AT+
Sbjct: 9   RADFPVLSREVNG-LPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATE 67
Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
           + E  RK+ + FINA  + E+VF +  TE INLVA SWG SN+++GD +I++  EHH+ I
Sbjct: 68  KMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANI 127
Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
           VPWQ++  + GA L+ + LN D +  L+ L  +   KT+L+ I H+SN+L +  P+ E++
Sbjct: 128 VPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMI 187
Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
             +H  GAKVLVD  Q+V H  VDVQ LD DF V S HK+ GPTGIG L+ K  LL  MP
Sbjct: 188 TLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMP 247
Query: 292 PFLGGGEMISDVFL-DHSTFADPPSRFEAGTPXXXXXXXXXXXXDYLSTIGMQKIHAYE 349
           P+ GGG MI+ V L + +T+   P RFEAGTP            +Y+S +G+  I  YE
Sbjct: 248 PWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYE 306

>pdb|1C0N|A Chain A, Csdb Protein, Nifs Homologue Length = 406

Iteration: 1
 Score =  267 bits (682), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 137/299 (45%), Positives = 189/299 (63%), Gaps = 2/299 (0%)
Query: 52  RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
           R DFP+L +EV G   L YLD+AA++QKP  V+ A   +Y    + VH G H LSA+AT+
Sbjct: 9   RADFPVLSREVNG-LPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHAGAHTLSAQATE 67
Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
           + E  RK+ + FINA  + E+VF +  TE INLVA SWG SN+++GD +I++  EHH+ I
Sbjct: 68  KMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANI 127
Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
           VPWQ++  + GA L+ + LN D +  L+ L  +    T+L+ I H+SN+L +  P+ E++
Sbjct: 128 VPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDAATRLLAITHVSNVLGTENPLAEMI 187
Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
             +H  GAKVLVD  Q+V H  VDVQ LD DF V S HK+ GPTGIG L+ K  LL  MP
Sbjct: 188 TLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMP 247
Query: 292 PFLGGGEMISDVFL-DHSTFADPPSRFEAGTPXXXXXXXXXXXXDYLSTIGMQKIHAYE 349
           P+ GGG MI+ V L + +T+   P RFEAGTP            +Y+S +G+  I  YE
Sbjct: 248 PWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYE 306

>pdb|4EB5|A Chain A, A. Fulgidus Iscs-Iscu Complex Structure Length = 382

Iteration: 1
 Score =  105 bits (262), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 120/235 (51%), Gaps = 13/235 (5%)
Query: 68  LVYLDNAATSQKPI--AVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN 125
           + Y D   TS KP+   +L+A+  Y      N    +H    KA +  + AR+KVA  +N
Sbjct: 1   MAYFD--YTSAKPVDERILEAMLPYMTESFGN-PSSVHSYGFKAREAVQEAREKVAKLVN 57
Query: 126 ASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANL 185
               G +VFT  ATEA NL    + + N + G  ++++  EH S I P + + QK G  +
Sbjct: 58  GG-GGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFL-QKQGFEV 115
Query: 186 KFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVL--V 243
           +++ +      D+  + + L   T LV + H +N + +I P+EEI   S  +  K    +
Sbjct: 116 EYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEI---SEVLAGKAALHI 172
Query: 244 DACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGE 298
           DA  SV  + VDV+ + AD L  SS+ + GP G+G L+ + +     P  LGGG+
Sbjct: 173 DATASVGQIEVDVEKIGADMLTISSNDIYGPKGVGALWIRKE-AKLQPVILGGGQ 226

>pdb|1ECX|A Chain A, Nifs-Like Protein Length = 384

Iteration: 1
 Score = 85.1 bits (209), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 116/232 (50%), Gaps = 6/232 (2%)
Query: 69  VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD 128
           VY DN AT++    VL+ +  +Y     N +   H +  +A    E AR+KVA  +  S 
Sbjct: 3   VYFDNNATTRVDDRVLEEMIVFYREKYGNPNSA-HGMGIEANLHMEKAREKVAKVLGVSP 61
Query: 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188
           S EI FT  ATE+IN +  +   +  K    +I T  EH + +   + ++ K G  +K++
Sbjct: 62  S-EIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMK-GFKVKYV 119
Query: 189 NLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLV--DAC 246
            ++      L++L++++   T LV I   +N + +I P+E++         + LV  DA 
Sbjct: 120 PVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAV 179
Query: 247 QSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGE 298
           Q++  +   ++ L+ D+   S+HK  GP G+G  + +   +   P   GGG+
Sbjct: 180 QTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKG-VPIRPLIHGGGQ 230

>pdb|1EG5|A Chain A, Nifs-like Protein Length = 384

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 114/232 (49%), Gaps = 6/232 (2%)
Query: 69  VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD 128
           VY DN AT++    VL+    +Y     N +   H    +A    E AR+KVA  +  S 
Sbjct: 3   VYFDNNATTRVDDRVLEEXIVFYREKYGNPNSA-HGXGIEANLHXEKAREKVAKVLGVSP 61
Query: 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188
           S EI FT  ATE+IN +  +   +  K    +I T  EH + +   + ++ K G  +K++
Sbjct: 62  S-EIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETXKYLSXK-GFKVKYV 119
Query: 189 NLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLV--DAC 246
            ++      L++L++++   T LV I   +N + +I P+E++         + LV  DA 
Sbjct: 120 PVDSRGVVKLEELEKLVDEDTFLVSIXAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAV 179
Query: 247 QSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGE 298
           Q++  +   ++ L+ D+   S+HK  GP G+G  + +   +   P   GGG+
Sbjct: 180 QTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKG-VPIRPLIHGGGQ 230

>pdb|3LVJ|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1) Length = 423

Iteration: 1
 Score = 81.6 bits (200), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 105/223 (47%), Gaps = 5/223 (2%)
Query: 62  VYGSKKL-VYLDNAATSQKPIAVLKALQNYY--EAYNSNVHRGIHFLSAKATDEYELARK 118
           VY + KL +YLD +AT+     V + +  +   +    N     H    +A +  ++AR 
Sbjct: 16  VYRAMKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARN 75
Query: 119 KVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVA 178
           ++A  + A D  EIVFT  ATE+ NL          K G  +I +  EH + +   + + 
Sbjct: 76  QIADLVGA-DPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQL- 133
Query: 179 QKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVG 238
           ++ G  + +L    +   DL +L+  +   T LV I H++N +  +  I  I       G
Sbjct: 134 EREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARG 193
Query: 239 AKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLF 281
               VDA QSV  + +D+  L  D +  S HK+ GP GIG L+
Sbjct: 194 IIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALY 236

>pdb|1P3W|B Chain B, X-Ray Crystal Structure Of E. Coli Iscs Length = 404

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 100/215 (46%), Gaps = 4/215 (1%)
Query: 69  VYLDNAATSQKPIAVLKALQNYY--EAYNSNVHRGIHFLSAKATDEYELARKKVAAFINA 126
           +YLD +AT+     V + +  +   +    N     H    +A +  ++AR ++A  + A
Sbjct: 5   IYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGA 64
Query: 127 SDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLK 186
            D  EIVFT  ATE+ NL          K G  +I +  EH + +   + + ++ G  + 
Sbjct: 65  -DPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQL-EREGFEVT 122
Query: 187 FLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDAC 246
           +L    +   DL +L+  +   T LV I H++N +  +  I  I       G    VDA 
Sbjct: 123 YLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDAT 182
Query: 247 QSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLF 281
           QSV  + +D+  L  D +  S HK+ GP GIG L+
Sbjct: 183 QSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALY 217

>pdb|3CAI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Rv3778c Protein Length = 406

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 93/176 (52%), Gaps = 5/176 (2%)
Query: 101 GIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEV 160
           G H  + ++    + AR+ VA  +NA D G +V   +    ++L+A +   S    G EV
Sbjct: 59  GAHPSARRSAAVLDAAREAVADLVNA-DPGGVVLGADRAVLLSLLAEA-SSSRAGLGYEV 116
Query: 161 ILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLD--KLKEMLSRKTKLVVIHHIS 218
           I++  +  + I PW   A + GA +K+  + D E+ +L   + + ++S+ T+LV ++  S
Sbjct: 117 IVSRLDDEANIAPWLRAAHRYGAKVKWAEV-DIETGELPTWQWESLISKSTRLVAVNSAS 175
Query: 219 NMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGP 274
             L  +  +  +    HDVGA V+VD   + P+ ++D++  DAD +  ++H   GP
Sbjct: 176 GTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLDIRETDADVVTVNAHAWGGP 231

>pdb|1ELQ|A Chain A, Crystal Structure Of The Cystine C-S Lyase C-Des Length = 390

Iteration: 1
 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 120/278 (43%), Gaps = 22/278 (7%)
Query: 56  PILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYEL 115
           P LHQ   G     Y +       P   L+A+   Y     N   G   ++A    +  +
Sbjct: 6   PSLHQ-FPGLANKTYFNFGGQGILPTVALEAITAMYGYLQEN---GPFSIAANQHIQQLI 61
Query: 116 A--RKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVP 173
           A  R+ +A   N  D   I  T N T   ++V   WGL +   GDE++LT  EH   I  
Sbjct: 62  AQLRQALAETFNV-DPNTITITDNVTTGCDIVL--WGL-DWHQGDEILLTDCEHPGIIAI 117
Query: 174 WQLVAQKTGANLKFL----NLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEE 229
            Q +A + G   +F      LN  ++  +  L   L  KT+LV++ H+      +LP+ E
Sbjct: 118 VQAIAARFGITYRFFPVAATLNQGDAAAV--LANHLGPKTRLVILSHLLWNTGQVLPLAE 175
Query: 230 IV----HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKS 284
           I+        +   +VLVD  QS   + +D   L+ D+   + HK   GP G+G L+   
Sbjct: 176 IMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHG 235
Query: 285 DLLSAM-PPFLGGGEMISDVFLDHSTFADPPSRFEAGT 321
           D L  + P ++G   +      + + +A+   RFE  T
Sbjct: 236 DCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVAT 273

>pdb|1N2T|A Chain A, C-Des Mutant K223a With Gly Covalenty Linked To The Plp-Cofactor Length = 386

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 98/215 (45%), Gaps = 16/215 (7%)
Query: 117 RKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQL 176
           R+ +A   N  D   I  T N T   ++V   WGL +   GDE++LT  EH   I   Q 
Sbjct: 61  RQALAETFNV-DPNTITITDNVTTGCDIVL--WGL-DWHQGDEILLTDCEHPGIIAIVQA 116
Query: 177 VAQKTGANLKFL----NLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV- 231
           +A + G   +F      LN  ++  +  L   L  KT+LV++ H+      +LP+ EI+ 
Sbjct: 117 IAARFGITYRFFPVAATLNQGDAAAV--LANHLGPKTRLVILSHLLWNTGQVLPLAEIMA 174
Query: 232 ---HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLL 287
                  +   +VLVD  QS   + +D   L+ D+   + H    GP G+G L+   D L
Sbjct: 175 VCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHAWFAGPAGVGGLYIHGDCL 234
Query: 288 SAM-PPFLGGGEMISDVFLDHSTFADPPSRFEAGT 321
             + P ++G   +      + + +A+   RFE  T
Sbjct: 235 GEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVAT 269

>pdb|3VAX|A Chain A, Crytal Structure Of Dnda From Streptomyces Lividans Length = 400

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 105/238 (44%), Gaps = 11/238 (4%)
Query: 68  LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS 127
           + YLD AAT++    V   + ++  A   N     H    +A    E AR+ +A+ ++A 
Sbjct: 21  MTYLDAAATTRVDQRVADIVLHWMTAEFGNAG-SRHEYGIRAKRGVERAREYLASTVSA- 78
Query: 128 DSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVA-EHHSAIVPWQLVAQKTGANLK 186
           +  E++FT  ATE+ N+          ++G   I+T A EH + + P + +A + G  + 
Sbjct: 79  EPDELIFTSGATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGR-GFEVD 137
Query: 187 FLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDAC 246
           FL         ++ + E L   T LV + H++N    I P+ E+          + VDA 
Sbjct: 138 FLTPGPSGRISVEGVMERLRPDTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAA 197
Query: 247 QSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKS------DLLSAMPPFLGGGE 298
           Q    +  D+     D +  S HK+  P G+G L  +       + +   P   GGG+
Sbjct: 198 QGYGKVPGDLT-TPIDMISISGHKIGAPKGVGALVTRRREEMDDERVPLEPIMFGGGQ 254

>pdb|3GZD|A Chain A, Human Selenocysteine Lyase, P1 Crystal Form Length = 440

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 109/263 (41%), Gaps = 33/263 (12%)
Query: 66  KKLVYLD-NAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI 124
           ++ VY+D NA T  +P  +    +  +EA+ +      +    KA D    AR+ +A  I
Sbjct: 24  ERKVYMDYNATTPLEPEVIQAMTKAMWEAWGNP--SSPYSAGRKAKDIINAARESLAKMI 81
Query: 125 NASDSGEIVFTKNATEAINLVAYS----WGLSNLKSG-------------DEVILTVAEH 167
                 +I+FT   TE+ NLV +S    +  +    G                I +  EH
Sbjct: 82  GGKPQ-DIIFTSGGTESNNLVIHSVVKHFHANQTSKGHTGGHHSPVKGAKPHFITSSVEH 140
Query: 168 HSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHHISNMLASILP 226
            S  +P + + ++  A + F+ ++      ++D +   +   T+LV I   +N    ++P
Sbjct: 141 DSIRLPLEHLVEEQVAAVTFVPVSKVSGQTEVDDILAAVRPTTRLVTIMLANNETGIVMP 200
Query: 227 IEEIVHW-----SHDVGAK-----VLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPT- 275
           + EI           V A      V  DA Q++    VDV+ L  DFL    HK  GP  
Sbjct: 201 VPEISQRIKALNQERVAAGLPPILVHTDAAQALGKQRVDVEDLGVDFLTIVGHKFYGPRI 260
Query: 276 GIGFLFGKSDLLSAMPPFLGGGE 298
           G  ++ G  +     P   GGG+
Sbjct: 261 GALYIRGLGEFTPLYPMLFGGGQ 283

>pdb|3GZC|A Chain A, Structure Of Human Selenocysteine Lyase Length = 440

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 109/263 (41%), Gaps = 33/263 (12%)
Query: 66  KKLVYLD-NAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI 124
           ++ VY+D NA T  +P  +    +  +EA+ +      +    KA D    AR+ +A  I
Sbjct: 24  ERKVYMDYNATTPLEPEVIQAMTKAMWEAWGNP--SSPYSAGRKAKDIINAARESLAKMI 81
Query: 125 NASDSGEIVFTKNATEAINLVAYS----WGLSNLKSG-------------DEVILTVAEH 167
                 +I+FT   TE+ NLV +S    +  +    G                I +  EH
Sbjct: 82  GGKPQ-DIIFTSGGTESNNLVIHSVVKHFHANQTSKGHTGGHHSPVKGAKPHFITSSVEH 140
Query: 168 HSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHHISNMLASILP 226
            S  +P + + ++  A + F+ ++      ++D +   +   T+LV I   +N    ++P
Sbjct: 141 DSIRLPLEHLVEEQVAAVTFVPVSKVSGQTEVDDILAAVRPTTRLVTIMLANNETGIVMP 200
Query: 227 IEEIVHW-----SHDVGAK-----VLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPT- 275
           + EI           V A      V  DA Q++    VDV+ L  DFL    HK  GP  
Sbjct: 201 VPEISQRIKALNQERVAAGLPPILVHTDAAQALGKQRVDVEDLGVDFLTIVGHKFYGPRI 260
Query: 276 GIGFLFGKSDLLSAMPPFLGGGE 298
           G  ++ G  +     P   GGG+
Sbjct: 261 GALYIRGLGEFTPLYPMLFGGGQ 283

>pdb|3A9X|A Chain A, Crystal Structure Of Rat Selenocysteine Lyase Length = 432

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 112/263 (42%), Gaps = 35/263 (13%)
Query: 67  KLVYLD-NAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN 125
           + VY+D NA T  +P  +    +   EA+ +      +    KA D    AR  +A  I 
Sbjct: 18  RKVYMDYNATTPLEPEVIQAVTEAMKEAWGNPSSS--YVAGRKAKDIINTARASLAKMIG 75
Query: 126 ASDSGEIVFTKNATEAINLVAYS-------WGLSNLKSGDEV----------ILTVAEHH 168
                +I+FT   TE+ NLV +S             ++ D++          I    EH 
Sbjct: 76  GKPQ-DIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHD 134
Query: 169 SAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHHISNMLASILPI 227
           S  +P + + +   A + F+ ++  +   +++ +   +   T LV I   +N    I+PI
Sbjct: 135 SIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTIMLANNETGVIMPI 194
Query: 228 EEI---VHWSHDVGA-----KVLV--DACQSVPHMVVDVQGLDADFLVASSHKMCGPTGI 277
            EI   +   + + A     +VLV  DA Q++    VDV+ L  DFL    HK  GP  I
Sbjct: 195 SEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYGPR-I 253
Query: 278 GFLF--GKSDLLSAMPPFLGGGE 298
           G L+  G   L    P   GGG+
Sbjct: 254 GALYVRGVGKLTPLYPMLFGGGQ 276

>pdb|2W8W|A Chain A, N100y Spt With Plp-Ser Length = 427

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 21/161 (13%)
Query: 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188
           +G IVF+      + ++      S L    E ++  A+ H++I  +    Q    N + +
Sbjct: 125 TGAIVFSTGYMANLGII------STLAGKGEYVILDADSHASI--YDGCQQ---GNAEIV 173
Query: 189 NLNDDESPDLDK-LKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQ 247
               +   DLDK L  +     KLVV+  + +ML  I P++E+V  +   GA VLVD   
Sbjct: 174 RFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAH 233
Query: 248 SVPHM------VVDVQGLDA--DFLVASSHKMCGPTGIGFL 280
           S+         V + QGL+   DF+V +  K  G  G GF+
Sbjct: 234 SMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVGTVG-GFV 273

>pdb|2JGT|A Chain A, Low Resolution Structure Of Spt Length = 422

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 21/161 (13%)
Query: 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188
           +G IVF+      + ++      S L    E ++  A+ H++I  +    Q    N + +
Sbjct: 126 TGAIVFSTGYMANLGII------STLAGKGEYVILDADSHASI--YDGCQQ---GNAEIV 174
Query: 189 NLNDDESPDLDK-LKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQ 247
               +   DLDK L  +     KLVV+  + +ML  I P++E+V  +   GA VLVD   
Sbjct: 175 RFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAH 234
Query: 248 SVPHM------VVDVQGLDA--DFLVASSHKMCGPTGIGFL 280
           S+         V + QGL+   DF+V +  K  G  G GF+
Sbjct: 235 SMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVGTVG-GFV 274

>pdb|2W8J|A Chain A, Spt With Plp-Ser Length = 427

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 21/161 (13%)
Query: 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188
           +G IVF+      + ++      S L    E ++  A+ H++I  +    Q    N + +
Sbjct: 125 TGAIVFSTGYMANLGII------STLAGKGEYVILDADSHASI--YDGCQQ---GNAEIV 173
Query: 189 NLNDDESPDLDK-LKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQ 247
               +   DLDK L  +     KLVV+  + +ML  I P++E+V  +   GA VLVD   
Sbjct: 174 RFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAH 233
Query: 248 SVPHM------VVDVQGLDA--DFLVASSHKMCGPTGIGFL 280
           S+         V + QGL+   DF+V +  K  G  G GF+
Sbjct: 234 SMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVGTVG-GFV 273

>pdb|2W8U|A Chain A, Spt With Plp, N100y Length = 427

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 21/161 (13%)
Query: 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188
           +G IVF+      + ++      S L    E ++  A+ H++I  +    Q    N + +
Sbjct: 125 TGAIVFSTGYMANLGII------STLAGKGEYVILDADSHASI--YDGCQQ---GNAEIV 173
Query: 189 NLNDDESPDLDK-LKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQ 247
               +   DLDK L  +     KLVV+  + +ML  I P++E+V  +   GA VLVD   
Sbjct: 174 RFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAH 233
Query: 248 SVPHM------VVDVQGLDA--DFLVASSHKMCGPTGIGFL 280
           S+         V + QGL+   DF+V +     G  G GF+
Sbjct: 234 SMGFFGPNGRGVYEAQGLEGQIDFVVGTFSXSVGTVG-GFV 273

>pdb|2JG2|A Chain A, High Resolution Structure Of Spt With Plp Internal Aldimine Length = 422

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 21/161 (13%)
Query: 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188
           +G IVF+      + ++      S L    E ++  A+ H++I  +    Q    N + +
Sbjct: 126 TGAIVFSTGYMANLGII------STLAGKGEYVILDADSHASI--YDGCQQ---GNAEIV 174
Query: 189 NLNDDESPDLDK-LKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQ 247
               +   DLDK L  +     KLVV+  + +ML  I P++E+V  +   GA VLVD   
Sbjct: 175 RFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAH 234
Query: 248 SVPHM------VVDVQGLDA--DFLVASSHKMCGPTGIGFL 280
           S+         V + QGL+   DF+V +     G  G GF+
Sbjct: 235 SMGFFGPNGRGVYEAQGLEGQIDFVVGTFSXSVGTVG-GFV 274

>pdb|1QZ9|A Chain A, The Three Dimensional Structure Of Kynureninase From Pseudomonas Fluorescens Length = 416

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 107/250 (42%), Gaps = 24/250 (9%)
Query: 58  LHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYY-EAYNSNVHRGIHFLSAKATDEYELA 116
           L Q+    + ++YLD  +   +P+A L   Q    E + + + R  +  SA   D  E  
Sbjct: 19  LRQQFALPEGVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIRSWN--SAGWRDLSERL 76
Query: 117 RKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIV---- 172
             ++A  I A D GE+V T   T +INL         L +   V  T +     IV    
Sbjct: 77  GNRLATLIGARD-GEVVVTD--TTSINL------FKVLSAALRVQATRSPERRVIVTETS 127
Query: 173 --PWQLVAQKTGANL--KFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIE 228
             P  L   +  A++  +   L   +SP+  +L + + + T +V++ H++     +  ++
Sbjct: 128 NFPTDLYIAEGLADMLQQGYTLRLVDSPE--ELPQAIDQDTAVVMLTHVNYKTGYMHDMQ 185
Query: 229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMC--GPTGIGFLFGKSDL 286
            +   SH+ GA  + D   S   + VD+    AD+ +  ++K    GP    F++    L
Sbjct: 186 ALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQL 245
Query: 287 LSAMPPFLGG 296
              +P  L G
Sbjct: 246 CDLVPQPLSG 255

>pdb|2W8T|A Chain A, Spt With Plp, N100c Length = 427

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 21/161 (13%)
Query: 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188
           +G IVF+      + ++      S L    E ++  A+ H++I  +    Q    N + +
Sbjct: 125 TGAIVFSTGYMANLGII------STLAGKGEYVILDADSHASI--YDGCQQ---GNAEIV 173
Query: 189 NLNDDESPDLDK-LKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQ 247
               +   DLDK L  +     KLVV+  + +ML  I P++E+V  +   GA VLVD   
Sbjct: 174 RFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAH 233
Query: 248 SVPHM------VVDVQGLDA--DFLVASSHKMCGPTGIGFL 280
           S+         V + QGL+   DF+V +     G  G GF+
Sbjct: 234 SMGFFGPNGRGVYEAQGLEGQIDFVVGTFSXSVGTVG-GFV 273

>pdb|2W8V|A Chain A, Spt With Plp, N100w Length = 427

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 21/161 (13%)
Query: 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188
           +G IVF+      + ++      S L    E ++  A+ H++I  +    Q    N + +
Sbjct: 125 TGAIVFSTGYMANLGII------STLAGKGEYVILDADSHASI--YDGCQQ---GNAEIV 173
Query: 189 NLNDDESPDLDK-LKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQ 247
               +   DLDK L  +     KLVV+  + +ML  I P++E+V  +   GA VLVD   
Sbjct: 174 RFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAH 233
Query: 248 SVPHM------VVDVQGLDA--DFLVASSHKMCGPTGIGFL 280
           S+         V + QGL+   DF+V +     G  G GF+
Sbjct: 234 SMGFFGPNGRGVYEAQGLEGQIDFVVGTFSXSVGTVG-GFV 273

>pdb|1CS1|A Chain A, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli Length = 386

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 15/115 (13%)
Query: 133 VFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQL---VAQKTGANLKFLN 189
           V T     AI+LV   +    LK GD   L VA H      ++L   +A++    + F++
Sbjct: 71  VLTNTGMSAIHLVTTVF----LKPGD---LLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD 123
Query: 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVD 244
             D+++     L+  L+ K KLV++   SN L  ++ I +I H + +VGA  +VD
Sbjct: 124 QGDEQA-----LRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVD 173

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	368
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	0.0
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	0.0
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	1e-165
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	1e-158
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	1e-101
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	7e-71
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	2e-38
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	2e-37
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	5e-37
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	1e-36
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	5e-31
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	3e-09
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	5e-09
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	4e-08
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	2e-07
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	7e-07
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	9e-07
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	1e-06
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	3e-06
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	7e-06
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	9e-06
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	1e-05
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	2e-05
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	2e-05
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	2e-05
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	3e-05
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	4e-05
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	7e-05
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	9e-05
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	1e-04
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	1e-04
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	3e-04
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	5e-04
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	7e-04

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 Length = 420

 Score =  557 bits (1438), Expect = 0.0
 Identities = 197/311 (63%), Positives = 235/311 (75%), Gaps = 1/311 (0%)

Query: 39  VTSTDSVSLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNV 98
           + +    SL    R DFPIL+QE+ G   LVYLDNAATSQKP AVL+ L +YYE  N+NV
Sbjct: 1   MVALQIPSLAATVRQDFPILNQEING-HPLVYLDNAATSQKPRAVLEKLMHYYENDNANV 59

Query: 99  HRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD 158
           HRG H LS +ATD YE  R KVA FINA    EIV+T+NATEAINLVAYSWG++NLK+GD
Sbjct: 60  HRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGD 119

Query: 159 EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHIS 218
           E+I TV EHHS +VPWQ+VA KTGA LKF+ L++ ES DL+  K +LS KTKLV + HIS
Sbjct: 120 EIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHIS 179

Query: 219 NMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIG 278
           N L  + P EEI   +H  GAKVLVDACQS PH  +DVQ +D D+LVAS HKMC PTGIG
Sbjct: 180 NTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIG 239

Query: 279 FLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS 338
           FL+GK ++L AMPPF GGGEMI++VF DH T  + P +FEAGTPAI EAI LGAA+DYL+
Sbjct: 240 FLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLT 299

Query: 339 TIGMQKIHAYE 349
            +GM+ IH YE
Sbjct: 300 DLGMENIHNYE 310

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* Length = 406

 Score =  551 bits (1422), Expect = 0.0
 Identities = 146/299 (48%), Positives = 199/299 (66%), Gaps = 2/299 (0%)

Query: 52  RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
           R DFP+L +EV G   L YLD+AA++QKP  V+ A   +Y    + VHRGIH LSA+AT+
Sbjct: 9   RADFPVLSREVNG-LPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATE 67

Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
           + E  RK+ + FINA  + E+VF +  TE INLVA SWG SN+++GD +I++  EHH+ I
Sbjct: 68  KMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANI 127

Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
           VPWQ++  + GA L+ + LN D +  L+ L  +   KT+L+ I H+SN+L +  P+ E++
Sbjct: 128 VPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMI 187

Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
             +H  GAKVLVD  Q+V H  VDVQ LD DF V S HK+ GPTGIG L+ K  LL  MP
Sbjct: 188 TLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMP 247

Query: 292 PFLGGGEMISDV-FLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYE 349
           P+ GGG MI+ V   + +T+   P RFEAGTP  G  IGLGAA++Y+S +G+  I  YE
Sbjct: 248 PWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYE 306

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* Length = 390

 Score =  466 bits (1202), Expect = e-165
 Identities = 72/308 (23%), Positives = 118/308 (38%), Gaps = 20/308 (6%)

Query: 52  RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
              FP L           Y +       P   L+A+   Y     N    I   +     
Sbjct: 8   LHQFPGLAN-------KTYFNFGGQGILPTVALEAITAMYGYLQENGPFSIA-ANQHIQQ 59

Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
                R+ +A   N      I  T N T   ++V +     +   GDE++LT  EH   I
Sbjct: 60  LIAQLRQALAETFNVD-PNTITITDNVTTGCDIVLWGL---DWHQGDEILLTDCEHPGII 115

Query: 172 VPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEE 229
              Q +A + G   +F  +    ++      L   L  KT+LV++ H+      +LP+ E
Sbjct: 116 AIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAE 175

Query: 230 IVHWSH----DVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKM-CGPTGIGFLFGKS 284
           I+        +   +VLVD  QS   + +D   L+ D+   + HK   GP G+G L+   
Sbjct: 176 IMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHG 235

Query: 285 DLLSAM-PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQ 343
           D L  + P ++G   +      + + +A+   RFE  T A  +  GL AA+      G  
Sbjct: 236 DCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTA 295

Query: 344 KIHAYEVK 351
           +     + 
Sbjct: 296 EERYQAIC 303

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} Length = 406

 Score =  448 bits (1155), Expect = e-158
 Identities = 71/313 (22%), Positives = 133/313 (42%), Gaps = 36/313 (11%)

Query: 52  RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
           R   P L          V+ D  A    P +V   +   +    ++   G H  + ++  
Sbjct: 17  RGLHPSL------GDGWVHFDAPAGMLIPDSVATTVSTAFRRSGAST-VGAHPSARRSAA 69

Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
             + AR+ VA  +NA D G +V   +    ++L+A +   S    G EVI++  +  + I
Sbjct: 70  VLDAAREAVADLVNA-DPGGVVLGADRAVLLSLLAEASS-SRAGLGYEVIVSRLDDEANI 127

Query: 172 VPWQLVAQKTGANLKFLNLN-DDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEI 230
            PW   A + GA +K+  ++ +       + + ++S+ T+LV ++  S  L  +  +  +
Sbjct: 128 APWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISKSTRLVAVNSASGTLGGVTDLRAM 187

Query: 231 VHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAM 290
               HDVGA V+VD   + P+ ++D++  DAD +  ++H   GP     +F    ++++ 
Sbjct: 188 TKLVHDVGALVVVDHSAAAPYRLLDIRETDADVVTVNAHAWGGPPIGAMVFRDPSVMNSF 247

Query: 291 PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI---------- 340
                            + +A  P+R E G    G   G+ A+I+YL+ +          
Sbjct: 248 GSV------------STNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRE 295

Query: 341 ----GMQKIHAYE 349
                MQ   AY 
Sbjct: 296 RLAVSMQSADAYL 308

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371

 Score =  302 bits (776), Expect = e-101
 Identities = 47/297 (15%), Positives = 101/297 (34%), Gaps = 38/297 (12%)

Query: 63  YGSKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSA-KATDEYELARKKV 120
             +K  + +D   T  +      +AL  + + Y+         L   K    ++    ++
Sbjct: 4   RETKDFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQL 63

Query: 121 AAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK 180
             F+          T  A EA   V +S      K    V++    H+S+ V  +     
Sbjct: 64  PKFLGCD---VARVTNGAREAKFAVMHSLA----KKDAWVVMDENCHYSSYVAAER---- 112

Query: 181 TGANLKFLNLNDDE--SPDLDKLKEMLSRKTK-----LVVIHHISNMLASILPIEEIVHW 233
            G N+  +   D    +   +   + +    K     L +I +      ++  +++I   
Sbjct: 113 AGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKV 172

Query: 234 SHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTG-IGFLFGKSDLLSAMPP 292
             +    +LV+   ++  M V ++ + ADF+V S HK    +G IG +  K +    +  
Sbjct: 173 CSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLR 232

Query: 293 FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYE 349
                            + +        T      I L A+  ++     ++I  ++
Sbjct: 233 -------------RSEKYKNKEVELLGCTARGATIITLMASFPHV----RERIKRWD 272

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 Length = 416

 Score =  226 bits (578), Expect = 7e-71
 Identities = 53/307 (17%), Positives = 105/307 (34%), Gaps = 21/307 (6%)

Query: 52  RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
           R  F +        + ++YLD  +   +P+A L   Q        N         A   D
Sbjct: 20  RQQFALP-------EGVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIRSWNS-AGWRD 71

Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLV---AYSWGLSNLKSGDEVILTVAEHH 168
             E    ++A  I A   GE+V T   +  +  V   A     +       ++   +   
Sbjct: 72  LSERLGNRLATLIGA-RDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFP 130

Query: 169 SAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIE 228
           + +   + +A                    ++L + + + T +V++ H++     +  ++
Sbjct: 131 TDLYIAEGLADMLQ-----QGYTLRLVDSPEELPQAIDQDTAVVMLTHVNYKTGYMHDMQ 185

Query: 229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK--MCGPTGIGFLFGKSDL 286
            +   SH+ GA  + D   S   + VD+    AD+ +  ++K    GP    F++    L
Sbjct: 186 ALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQL 245

Query: 287 LSAMPPFLGGGEMISDVFLDHSTFADPPS--RFEAGTPAIGEAIGLGAAIDYLSTIGMQK 344
              +P  L G    S  F     +       R+  GT  I     +   +D  +   M  
Sbjct: 246 CDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMAS 305

Query: 345 IHAYEVK 351
           +    + 
Sbjct: 306 LRRKSLA 312

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* Length = 465

 Score =  142 bits (358), Expect = 2e-38
 Identities = 47/306 (15%), Positives = 87/306 (28%), Gaps = 16/306 (5%)

Query: 56  PILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYEL 115
           P+    V   +  +Y    +   +P  V   L+   + +      G            E 
Sbjct: 56  PVDLSLVNKDENAIYFLGNSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDES 115

Query: 116 ARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQ 175
               +   + A +  EI      T  ++L+  S          +++L      S     +
Sbjct: 116 IVGLMKDIVGA-NEKEIALMNALTVNLHLLMLS-FFKPTPKRYKILLEAKAFPSDHYAIE 173

Query: 176 LVAQKTGANLKFLNLNDD--------ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPI 227
              Q  G N++                  D+ ++ E       +++   +         I
Sbjct: 174 SQLQLHGLNIEESMRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNI 233

Query: 228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK--MCGPTGIGFLFGKSD 285
             I       G  V  D   +V ++ + +     DF    S+K    G  GI   F    
Sbjct: 234 PAITKAGQAKGCYVGFDLAHAVGNVELYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEK 293

Query: 286 LLSAMPPFLGGGEMI--SDVFLDHSTFADPPS--RFEAGTPAIGEAIGLGAAIDYLSTIG 341
               + P L G      S  F   +     P    F    P I     L A+++      
Sbjct: 294 HAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQAT 353

Query: 342 MQKIHA 347
           M+ +  
Sbjct: 354 MKALRK 359

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* Length = 384

 Score =  137 bits (348), Expect = 2e-37
 Identities = 59/216 (27%), Positives = 104/216 (48%), Gaps = 7/216 (3%)

Query: 69  VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD 128
           VY DN AT++    VL+ +  +Y     N +   H +  +A    E AR+KVA  +    
Sbjct: 3   VYFDNNATTRVDDRVLEEMIVFYREKYGNPN-SAHGMGIEANLHMEKAREKVAKVLGV-S 60

Query: 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVP-WQLVAQKTGANLKF 187
             EI FT  ATE+IN +  +   +  K    +I T  EH + +     L     G  +K+
Sbjct: 61  PSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYL--SMKGFKVKY 118

Query: 188 LNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVL--VDA 245
           + ++      L++L++++   T LV I   +N + +I P+E++         + L  VDA
Sbjct: 119 VPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDA 178

Query: 246 CQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLF 281
            Q++  +   ++ L+ D+   S+HK  GP G+G  +
Sbjct: 179 VQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITY 214

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* Length = 423

 Score =  137 bits (347), Expect = 5e-37
 Identities = 66/235 (28%), Positives = 106/235 (45%), Gaps = 6/235 (2%)

Query: 66  KKLVYLDNAATSQKPIAVLKALQNYYEAYNS--NVHRGIHFLSAKATDEYELARKKVAAF 123
           K  +YLD +AT+     V + +  +     +  N     H    +A +  ++AR ++A  
Sbjct: 21  KLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADL 80

Query: 124 INASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVP-WQLVAQKTG 182
           + A D  EIVFT  ATE+ NL          K G  +I +  EH + +    QL  ++ G
Sbjct: 81  VGA-DPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQL--EREG 137

Query: 183 ANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVL 242
             + +L    +   DL +L+  +   T LV I H++N +  +  I  I       G    
Sbjct: 138 FEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYH 197

Query: 243 VDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGG 297
           VDA QSV  + +D+  L  D +  S HK+ GP GIG L+ +      +   + GG
Sbjct: 198 VDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGG 252

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* Length = 382

 Score =  135 bits (343), Expect = 1e-36
 Identities = 66/215 (30%), Positives = 106/215 (49%), Gaps = 6/215 (2%)

Query: 68  LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS 127
           + Y D  +       +L+A+  Y      N    +H    KA +  + AR+KVA  +N  
Sbjct: 1   MAYFDYTSAKPVDERILEAMLPYMTESFGNPSS-VHSYGFKAREAVQEAREKVAKLVNG- 58

Query: 128 DSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVP-WQLVAQKTGANLK 186
             G +VFT  ATEA NL    + + N + G  ++++  EH S I P   L  QK G  ++
Sbjct: 59  GGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFL--QKQGFEVE 116

Query: 187 FLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDAC 246
           ++ +      D+  + + L   T LV + H +N + +I P+EEI        A + +DA 
Sbjct: 117 YIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDAT 175

Query: 247 QSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLF 281
            SV  + VDV+ + AD L  SS+ + GP G+G L+
Sbjct: 176 ASVGQIEVDVEKIGADMLTISSNDIYGPKGVGALW 210

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* Length = 432

 Score =  121 bits (305), Expect = 5e-31
 Identities = 73/302 (24%), Positives = 109/302 (36%), Gaps = 52/302 (17%)

Query: 65  SKKLVYLDNAATSQKPIA--VLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAA 122
             + VY+D  AT+  P+   V++A+    +    N     +    KA D    AR  +A 
Sbjct: 16  PNRKVYMDYNATT--PLEPEVIQAVTEAMKEAWGNPSS-SYVAGRKAKDIINTARASLAK 72

Query: 123 FINASDSGEIVFTKNATEAINLV-----------------AYSWGLSNLKSGDEVILTVA 165
            I      +I+FT   TE+ NLV                           +    I    
Sbjct: 73  MIGG-KPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTV 131

Query: 166 EHHSAIVPWQLVAQKTGANLKFLNLNDDE-SPDLDKLKEMLSRKTKLVVIHHISNMLASI 224
           EH S  +P + + +   A + F+ ++      +++ +   +   T LV I   +N    I
Sbjct: 132 EHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTIMLANNETGVI 191

Query: 225 LPIEEI--------VHWSHDVGAKVL--VDACQSVPHMVVDVQGLDADFLVASSHKMCGP 274
           +PI EI           +     +VL   DA Q++    VDV+ L  DFL    HK  GP
Sbjct: 192 MPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYGP 251

Query: 275 TGIGFLF--GKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGA 332
             IG L+  G   L    P   GGG+                  F  GT       GLG 
Sbjct: 252 R-IGALYVRGVGKLTPLYPMLFGGGQE---------------RNFRPGTENTPMIAGLGK 295

Query: 333 AI 334
           A 
Sbjct: 296 AA 297

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} Length = 376

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 24/187 (12%), Positives = 54/187 (28%), Gaps = 28/187 (14%)

Query: 174 WQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLV-VIHH-----ISNMLASILPI 227
           +  + +        L L   +    +KL E  ++    + V        +          
Sbjct: 110 FVQLCEIHEIPYVALKLEHGKKLTKEKLYEYDNQNFTGLLVNVDETSTAVLY------DT 163

Query: 228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK--MCGPTGIGFLFGKSD 285
             I  +        + D   +      ++    AD ++  S K   C P GI  +     
Sbjct: 164 MMIGEFCKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQKVLAC-PPGISVIVLAPR 222

Query: 286 LLSAMPPFLGGGEMISDVFLD----HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST-I 340
            +  +       ++ + ++ D            + F   TPA+G  + +   +  +    
Sbjct: 223 GVERV----EKSKVRT-MYFDLKDALKNQERGQTPF---TPAVGILLQINERLKEIKKHG 274

Query: 341 GMQKIHA 347
           G     A
Sbjct: 275 GADAEVA 281

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 Length = 366

 Score = 56.0 bits (136), Expect = 5e-09
 Identities = 35/189 (18%), Positives = 69/189 (36%), Gaps = 29/189 (15%)

Query: 174 WQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS--RKTKLV-VIHH-----ISNMLASIL 225
              +A   G      +  +   PD+  +  +L+       + ++H      + N      
Sbjct: 95  MVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLN------ 148

Query: 226 PIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMC--GPTGIGFLFGK 283
           PI+E+   +H  G   +VDA  S   + +D+  L  D+L++S++K C  G  G  F+  +
Sbjct: 149 PIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANK-CIQGVPGFAFVIAR 207

Query: 284 SDLLSAM----PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST 339
              L+A                D++       D   ++   T      +    A+  L+ 
Sbjct: 208 EQKLAACKGHSRSL------SLDLYAQWRCMEDNHGKW-RFTSPTHTVLAFAQALKELAK 260

Query: 340 I-GMQKIHA 347
             G+   H 
Sbjct: 261 EGGVAARHQ 269

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Length = 375

 Score = 53.3 bits (129), Expect = 4e-08
 Identities = 51/293 (17%), Positives = 100/293 (34%), Gaps = 79/293 (26%)

Query: 22  SAIRRFSSALCVSSSPSVTSTDSVSLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPI 81
             +  + +    S+   +      SL       F                     S    
Sbjct: 7   FGVEEWLNVHENSAIYDIAGVSISSLT--LEELFA-------------------LSGTNP 45

Query: 82  -AVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE 140
               K LQ     Y      G               +K V+         +I+ T  AT 
Sbjct: 46  EDFYKKLQGTKLNYGWI--EGS----------PAF-KKSVSQLYTGVKPEQILQTNGATG 92

Query: 141 AINLVAYSWGLSNLKSGDEVILTVAEHHSAIVP-WQL---VAQKTGANLKFLNLNDDES- 195
           A  LV YS     ++ GD VI         + P +Q    + +  GA +    + ++   
Sbjct: 93  ANLLVLYSL----IEPGDHVIS--------LYPTYQQLYDIPKSLGAEVDLWQIEEENGW 140

Query: 196 -PDLDKLKEMLSRKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVD------- 244
            PDL+KL++++   TK++ I++ +N   +++    +EE+V  + +VGA +L D       
Sbjct: 141 LPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFS 200

Query: 245 --ACQSVPHM---VVDVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAM 290
                S+  +    + V        ++ ++ +    G  IG++     +   +
Sbjct: 201 ELDVPSIIEVYDKGIAVNS------LSKTYSL---PGIRIGWVAANHQVTDIL 244

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} Length = 431

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 33/178 (18%), Positives = 62/178 (34%), Gaps = 27/178 (15%)

Query: 151 LSNLKSGDEVIL-------TVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKE 203
              L+ GDE++        T+ E            ++       + L +    D + +  
Sbjct: 101 FGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAA 160

Query: 204 MLSRKTKLVVI----HHISNMLASILPIEEIVHWSHDV--GAKVLVDACQSVPHMVVDVQ 257
            +   TK++ I     + +    +I  I+E++ +  ++     V VD C       ++ Q
Sbjct: 161 AIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEF---IEEQ 217

Query: 258 ---GLDADFLVASSHKMCG----PTGIGFLFGKSDLLSAMPPFL---GGGEMISDVFL 305
               + AD +  S  K  G     TG G++ GK   + A    L   G G        
Sbjct: 218 EPCHVGADLMAGSLIKNPGGGIVKTG-GYIVGKEQYVEACAYRLTSPGIGAEAGASLY 274

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* Length = 374

 Score = 49.5 bits (118), Expect = 7e-07
 Identities = 30/187 (16%), Positives = 69/187 (36%), Gaps = 33/187 (17%)

Query: 118 KKVAAFINASDSGE-----IVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIV 172
           +KV  +      G+     + F + ++ AI        +  LK    +           +
Sbjct: 61  EKVNEYGLKHLGGDENDKCVGFNRTSS-AILAT-----ILALKPKKVIHYLPELPGHPSI 114

Query: 173 PWQLVAQKTGANL---KFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNM-LASILPIE 228
                       +   K+   +      + ++   + + T +++     ++ +  +   +
Sbjct: 115 E-------RSCKIVNAKYFESDK-----VGEILNKIDKDTLVIITGSTMDLKVIELENFK 162

Query: 229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQ----GLDADFLVASSHK-MCGPTGIGFLFGK 283
           ++++ + +  A V VD        ++  Q     L AD +V S+ K M GP G G L GK
Sbjct: 163 KVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRG-GLLAGK 221

Query: 284 SDLLSAM 290
            +L+  +
Sbjct: 222 KELVDKI 228

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* Length = 427

 Score = 49.4 bits (118), Expect = 9e-07
 Identities = 36/178 (20%), Positives = 66/178 (37%), Gaps = 24/178 (13%)

Query: 151 LSNLKSGDEVILTVAEHHSAIVP--------WQLVAQKTGANLKFLNLNDDESPDLDKLK 202
             NL+ G+ ++    E +  +               ++ G N K ++L +D  P+L++++
Sbjct: 109 FGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIE 168

Query: 203 EMLSRKTKLVVIHHISNM------LASILPIEEIVHWSHDV--GAKVLVDACQSVPHMVV 254
           ++L     + ++H   +          I  I+ IV    ++       VD C        
Sbjct: 169 KVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTK 228

Query: 255 DVQGLDADFLVASSHKMCG----PTGIGFLFGKSDLLSAMPPFL---GGGEMISDVFL 305
           +   + AD +  S  K  G    PTG G+L G  D +      L   G G      F 
Sbjct: 229 EPTDVGADLIAGSLIKNIGGGIAPTG-GYLAGTKDCIEKTSYRLTVPGIGGECGSTFG 285

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* Length = 409

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 35/173 (20%), Positives = 68/173 (39%), Gaps = 22/173 (12%)

Query: 139 TEAINLVAYSWGLSNLKSGDEVIL-------TVAEHHSAIVPWQLVAQKTGANLKFLNLN 191
           T AI+ V +      L+  DE++        T+ E        Q   +        + L 
Sbjct: 87  THAISTVLFG----ILRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLL 142

Query: 192 DDESPDLDKLKEMLSRKTKLVVI----HHISNMLASILPIEEIVHWSHDVGAKVL--VDA 245
           ++   D  ++ + ++ KTK++ I     +      +I  I+E++ +  ++  +V+  VD 
Sbjct: 143 ENGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDN 202

Query: 246 CQSVPHMVVDVQGLDADFLVASSHKMCG----PTGIGFLFGKSDLLSAMPPFL 294
           C        +   + AD +  S  K  G     TG G++ GK  L+      L
Sbjct: 203 CYGEFVEYQEPPEVGADIIAGSLIKNPGGGLAKTG-GYIAGKEALVDLCGYRL 254

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} Length = 411

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 31/194 (15%), Positives = 60/194 (30%), Gaps = 23/194 (11%)

Query: 174 WQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHI--SNMLASILPIEEI 230
              +A++  A +  + +   E    D++++ + R + +L++      S  +    P+ E+
Sbjct: 103 LCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQ--PLAEL 160

Query: 231 VHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK--MCGPTGIGFLF------- 281
                   A    DA  S+    ++      D + A   K     P+G   +        
Sbjct: 161 GEICRRYDALFYTDATASLGGNPLETDVWGLDAVSAGMQKCLGG-PSGTSPITLSARMEE 219

Query: 282 ------GKSDLLSAMPPFLGGGEMISDVFLDHSTFAD--PPSRFEAGTPAIGEAIGLGAA 333
                    + +       G  EMI   + D     D   P R    T A     G    
Sbjct: 220 AIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGAREC 279

Query: 334 IDYLSTIGMQKIHA 347
              +   G+    A
Sbjct: 280 ARLILQEGLDYGIA 293

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* Length = 392

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 36/184 (19%), Positives = 67/184 (36%), Gaps = 18/184 (9%)

Query: 174 WQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR--KTKLVVIHHI--SNMLASILPIEE 229
           +   A++   +L  + +  +E+ D   + +ML    +  +V + H    +   +  PI+ 
Sbjct: 98  FGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTIN--PIDA 155

Query: 230 IVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK--MCGPTGIGFLFGKSDLL 287
           I       GA ++VDA  S   M    +   AD  V   +K     P G+  +      +
Sbjct: 156 IGALVSAHGAYLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGA-PPGLTMMG-----V 209

Query: 288 S--AMPPFLGGGEMISDVFLDHSTFAD--PPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQ 343
           S  A               L    + +     +    TP++ E  GL  A+D     G +
Sbjct: 210 SERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPE 269

Query: 344 KIHA 347
            + A
Sbjct: 270 AVWA 273

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} Length = 416

 Score = 46.1 bits (110), Expect = 9e-06
 Identities = 35/196 (17%), Positives = 62/196 (31%), Gaps = 25/196 (12%)

Query: 174 WQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHI--SNMLASILPIEEI 230
              +A++ GAN+  L        D + +   + + K K+V + H   S       P++ I
Sbjct: 101 LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIH--PLKAI 158

Query: 231 VHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK--MCGPTGIGFL-------- 280
                   A  +VDA  ++    V V     D  +  + K     P+G+  +        
Sbjct: 159 GEACRTEDALFIVDAVATIGGCEVKVDEWKIDAAIGGTQKCLSV-PSGMAPITYNERVAD 217

Query: 281 -------FGKSDLLSAMPPFLGGGEMISDVFLDHSTFAD--PPSRFEAGTPAIGEAIGLG 331
                    +     A    L G   I+  + D S   D     R    T A      L 
Sbjct: 218 VIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALR 277

Query: 332 AAIDYLSTIGMQKIHA 347
             +  +   G++    
Sbjct: 278 EGVRLVLEEGLETRFE 293

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 Length = 393

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 25/187 (13%)

Query: 174 WQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHH------ISNMLASILP 226
              +A + GA+++ ++    E   L++L+  L   +  ++ + H               P
Sbjct: 124 LVDMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQ------P 177

Query: 227 IEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK--MCGPTGIGFLFGKS 284
           +E +     + G  +LVD   S+  + + +     D   + S K   C   G        
Sbjct: 178 LEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGC-SPGASPFT--- 233

Query: 285 DLLS--AMPPFLGGGEMISDVFLDHSTFAD--PPSRFEAGTPAIGEAIGLGAAIDYLSTI 340
             +S  A+         +++ +LD +         R    T  I     L  A+  ++  
Sbjct: 234 --MSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQE 291

Query: 341 GMQKIHA 347
           G+     
Sbjct: 292 GLANCWQ 298

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* Length = 390

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 33/150 (22%), Positives = 61/150 (40%), Gaps = 27/150 (18%)

Query: 108 KATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAY----SWGLSNLKSGDEVILT 163
           +   +YE    + A    +  +   V   + + A NL+            LK GDE+I+ 
Sbjct: 34  EYVKQYE---TQFAKTFGSKYA---VMVSSGSTA-NLLMIAALFFTKKPRLKKGDEIIVP 86

Query: 164 VAEHHSAIVPWQLVAQKTGANLKFL-----NLNDDESPDLDKLKEMLSRKTKLVVIHHIS 218
                +   P     Q+ G  +KF+      LN     D++ LKE ++  TK ++  ++ 
Sbjct: 87  AVSWSTTYYP----LQQYGLRVKFVDIDINTLN----IDIESLKEAVTDSTKAILTVNLL 138

Query: 219 NMLASILPIEEIVHWSHDVGAKVLVDACQS 248
               +   I +I+    D+   +L D C+S
Sbjct: 139 GNPNNFDEINKIIG-GRDI--ILLEDNCES 165

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* Length = 393

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 30/186 (16%), Positives = 65/186 (34%), Gaps = 20/186 (10%)

Query: 174 WQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKT-KLVVIHHI--SNMLASILPIEEI 230
              +A + GA +  +     E   L +++E L++    L+ + H   S  +    P++  
Sbjct: 113 AAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQ--PLDGF 170

Query: 231 VHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK--MCGPTGIGFLFGKSDLLS 288
               H     +LVD+  S+  + + +     D + +SS K     P GI  +       +
Sbjct: 171 GELCHRYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNA-PPGISLIS-----FN 224

Query: 289 --AMPPFLGGGEMISDVFLDHSTFA-----DPPSRFEAGTPAIGEAIGLGAAIDYLSTIG 341
             A              + D +  A     +  +R    T  +     L  ++  ++  G
Sbjct: 225 DKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQG 284

Query: 342 MQKIHA 347
           ++    
Sbjct: 285 LENCWR 290

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* Length = 396

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 29/186 (15%), Positives = 65/186 (34%), Gaps = 20/186 (10%)

Query: 174 WQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHI--SNMLASILPIEEI 230
              ++++ GA+++ +    D    L+ L   +   + K + + H   S+ L    P+E +
Sbjct: 108 AVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQ--PLEGV 165

Query: 231 VHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK--MCGPTGIGFLFGKSDLLS 288
               H     ++VDA  S+  +   +   + D +   + K     P GI  +      +S
Sbjct: 166 GQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGA-PPGITPIS-----IS 219

Query: 289 --AMPPFLGGGEMISDVFLDHSTFADPPSRFEAG-----TPAIGEAIGLGAAIDYLSTIG 341
             A+             + D     +    ++       T A      L  A+  ++  G
Sbjct: 220 PKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEG 279

Query: 342 MQKIHA 347
           ++    
Sbjct: 280 LENQIK 285

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* Length = 353

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 16/116 (13%)

Query: 174 WQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHH------ISNMLASILP 226
              +A   G + + L+    E  D + +   L R + ++V + H      + N      P
Sbjct: 89  VAEMAALHGLDPEVLDFPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVLN------P 142

Query: 227 IEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK--MCGPTGIGFL 280
            E I   + + GA   +DA  ++  +   ++ +  D+    S K     P G+  +
Sbjct: 143 AEAIGALAKEAGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSA-PPGLAPI 197

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* Length = 384

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 32/191 (16%), Positives = 72/191 (37%), Gaps = 30/191 (15%)

Query: 174 WQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHI--SNMLASILPIEEI 230
           W+ + ++   N+K L  +  +     +++E + + + KLV + H+  S  +    P++++
Sbjct: 92  WEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVRE--PVKDV 149

Query: 231 VHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK--MCGPTGIGFLF------G 282
           ++        ++VD   SV    V  +  + D  + +S K       G+G L        
Sbjct: 150 INKIRKYVELIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALGS-AAGLGLLLLSPKALS 208

Query: 283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAG------TPAIGEAIGLGAAIDY 336
             D  +++  +          +LD   +       E G      TP +   + L  A   
Sbjct: 209 ILDSQNSIAGY----------YLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRL 258

Query: 337 LSTIGMQKIHA 347
           +   G++    
Sbjct: 259 IEKEGIENRIK 269

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} Length = 386

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 17/117 (14%)

Query: 174 WQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS--RKTKLVVIHH------ISNMLASIL 225
           ++ V +  G     L     ++   + L + L      + V I +      + N      
Sbjct: 110 YKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLN------ 163

Query: 226 PIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK--MCGPTGIGFL 280
           P+ E+   + +    V VDA  ++    +       D + +SS K     P G+   
Sbjct: 164 PLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKWGLDVVFSSSQKAFGV-PPGLAIG 219

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* Length = 393

 Score = 43.0 bits (102), Expect = 9e-05
 Identities = 30/186 (16%), Positives = 62/186 (33%), Gaps = 20/186 (10%)

Query: 174 WQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKT-KLVVIHHI--SNMLASILPIEEI 230
              +A + GA+++ +     +S  LD++++ L      ++ +     S  +     +E +
Sbjct: 109 SADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQ--GLEGV 166

Query: 231 VHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK--MCGPTGIGFLFGKSDLLS 288
               H     ++VD   S+    + +   + D +   S K     P GI  +       S
Sbjct: 167 GALCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGA-PPGITPVS-----FS 220

Query: 289 --AMPPFLGGGEMISDVFLD-----HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG 341
             A+  +      +   + D              R    T +     GL  AI      G
Sbjct: 221 HRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEG 280

Query: 342 MQKIHA 347
           +  + A
Sbjct: 281 LPALIA 286

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} Length = 427

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 25/178 (14%)

Query: 151 LSNLKSGDEVILTVAEHHSAI--------VPWQLVAQKTGANLKFLNLNDDESPDLDKLK 202
             NL+  D ++      +  +               ++ G   K ++L D +  D++ +K
Sbjct: 110 FGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDLKDGK-VDINTVK 168

Query: 203 EMLS--RKTKLVVIHHISNM----LASILPIEEIVHWSHDVGAKVL--VDACQSVPHMVV 254
           E L      KL+ I   +         I  I EI+    +V   V+  VD C        
Sbjct: 169 EELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEEK 228

Query: 255 DVQGLDADFLVASSHKMCG----PTGIGFLFGKSDLLSAMPPFL---GGGEMISDVFL 305
           +   + AD +  S  K  G     TG G++ GK + ++     +   G G      F 
Sbjct: 229 EPTDVGADIIAGSLIKNIGGGIATTG-GYIAGKEEYVTQATFRVTVPGIGGECGSTFG 285

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} Length = 414

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 5/96 (5%)

Query: 151 LSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTK 210
            + L +GD ++   +   S  V    +  + G    F++ +D     L + +  LS  T+
Sbjct: 114 GALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDD-----LSQWERALSVPTQ 168

Query: 211 LVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDAC 246
            V     SN + S++ I  +   +H  GAKV++D  
Sbjct: 169 AVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNV 204

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} Length = 437

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 26/242 (10%), Positives = 63/242 (26%), Gaps = 65/242 (26%)

Query: 22  SAIRRFSSALCVSSSPSVTSTDSVSLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPI 81
           ++IR   +   V++    T T    +  +  P  P                     Q   
Sbjct: 26  ASIRDLVAL--VTNLEKATGTKFCRME-MGVPGLP-------------------APQ-IG 62

Query: 82  --AVLKAL-QNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-----DSGEIV 133
               ++ L +     Y +    G+           EL +++ + F          +   V
Sbjct: 63  IETEIQKLREGVASIYPNL--DGL----------PEL-KQEASRFAKLFVNIDIPARACV 109

Query: 134 FTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVP-WQLVAQK-----TGANLKF 187
            T  + +   +       ++       +         I P +     K      G   + 
Sbjct: 110 PTVGSMQGCFVSFLVANRTHKNREYGTLF--------IDPGF--NLNKLQCRILGQKFES 159

Query: 188 LNL--NDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVL 242
            +L     E         + + +   ++  + +N     +    +  I   +      V+
Sbjct: 160 FDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVI 219

Query: 243 VD 244
            D
Sbjct: 220 ED 221

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* Length = 398

 Score = 40.2 bits (95), Expect = 7e-04
 Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 5/96 (5%)

Query: 151 LSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTK 210
           L+  + GD ++   A +            K G N++F++         ++++  +  +TK
Sbjct: 97  LTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAAK-----PEEIRAAMRPETK 151

Query: 211 LVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDAC 246
           +V I   +N   S++ IE +   +H  GA ++VD  
Sbjct: 152 VVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNT 187

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	368
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	100.0
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	100.0
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	100.0
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	100.0
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	100.0
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	100.0
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	100.0
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	100.0
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	100.0
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	100.0
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	100.0
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	100.0
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	100.0
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	100.0
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	100.0
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	100.0
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	100.0
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	100.0
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	100.0
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	100.0
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	100.0
1iug_A	352	Putative aspartate aminotransferase; wild type, py	100.0
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	100.0
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	100.0
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	100.0
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	100.0
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	100.0
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.97
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.97
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.97
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.97
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.97
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.97
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.97
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	99.97
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.97
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	99.97
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	99.96
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.96
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	99.96
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	99.96
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.96
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	99.96
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	99.96
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	99.96
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	99.96
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.96
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	99.96
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	99.96
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	99.96
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	99.96
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.96
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	99.96
3nra_A	407	Aspartate aminotransferase; structural genomics, j	99.96
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.96
1svv_A	359	Threonine aldolase; structural genomics, structura	99.96
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	99.96
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.96
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.96
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	99.96
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.96
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	99.96
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.95
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.95
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	99.95
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.95
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	99.95
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	99.95
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.95
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.95
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.95
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.95
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	99.95
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	99.95
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	99.95
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.95
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.95
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	99.95
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	99.95
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.95
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	99.95
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.95
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	99.95
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.95
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.95
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.95
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.95
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.95
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.95
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.95
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	99.95
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.95
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.95
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.95
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	99.95
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.94
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	99.94
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.94
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.94
1vp4_A	425	Aminotransferase, putative; structural genomics, j	99.94
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.94
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.94
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.94
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.94
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	99.94
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.94
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.94
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.94
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.94
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.94
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.94
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.93
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.93
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.93
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.93
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.93
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.93
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.93
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.93
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.93
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.93
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.93
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.93
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.93
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.93
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.93
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.93
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.93
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.93
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.92
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.92
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.92
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.92
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.92
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.92
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.92
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.92
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.92
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.92
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.92
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.92
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.92
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.92
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.92
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.92
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.92
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.92
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.92
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.92
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.92
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.92
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.92
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.92
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	99.92
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.91
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.91
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.91
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.91
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.91
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.91
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.91
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.91
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.91
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.91
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.91
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.91
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.91
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.91
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.91
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.9
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.9
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.9
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	99.83
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.9
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.9
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.9
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.9
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.9
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.9
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.89
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.89
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.89
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.89
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.89
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.89
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.89
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.89
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.89
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.88
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.88
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.88
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.88
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.88
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.88
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.88
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	99.88
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.88
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.87
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.87
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.86
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.86
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.85
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.85
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.85
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.85
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.85
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.85
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.84
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.84
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.84
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.84
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.84
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.84
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.84
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.84
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.83
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.83
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.83
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.83
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.83
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.83
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.82
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.82
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.82
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.81
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.81
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	99.8
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.79
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.77
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.76
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.61
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.68
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	99.66
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	99.66
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	99.57
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.27

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=100.00  E-value=3.5e-40  Score=313.26  Aligned_cols=317  Identities=46%  Similarity=0.779  Sum_probs=266.5

Q ss_pred             hhhcCCCCcccccccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCC
Q 017640           49 HITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD  128 (368)
Q Consensus        49 ~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~  128 (368)
                      +.+|++||......+ +++++|||+++.++.|+.+.+++.+.+.....+++.+.+..++...+...++|+.+++++|.++
T Consensus         6 ~~~r~~f~~~~~~~~-g~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~   84 (406)
T 1kmj_A            6 DKVRADFPVLSREVN-GLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARS   84 (406)
T ss_dssp             HHHHHTCGGGGCEET-TEECEECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHHhCcccccccC-CCceEEecCCccCCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            568999998743211 2468999999999999999999999998876677655555556667888899999999999832


Q ss_pred             CCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccC
Q 017640          129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRK  208 (368)
Q Consensus       129 ~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~  208 (368)
                      +++|++|+|+|+|+..++.++.+..+++||+|++.+++|++....+...++..|++++.++.++++.+|+++|+++++++
T Consensus        85 ~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~  164 (406)
T 1kmj_A           85 AEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEK  164 (406)
T ss_dssp             GGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCTT
T ss_pred             CCeEEEeCChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhccC
Confidence            34999999999999999998721015789999999999999988888888888999999999888889999999999999


Q ss_pred             ceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEcccccc
Q 017640          209 TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLS  288 (368)
Q Consensus       209 ~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~  288 (368)
                      +++|++++++||||.++|+++|.++|++||+++|+|++|+.+..++++...++|++++|+||.+|++|+|++++++++++
T Consensus       165 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~~g~~G~G~~~~~~~~~~  244 (406)
T 1kmj_A          165 TRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQ  244 (406)
T ss_dssp             EEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTTCEEEEECHHHHH
T ss_pred             CeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCCCcccccCCCEEEEEchhccCCCCcEEEEEeHHHHh
Confidence            99999999999999999999999999999999999999998877666555679999999999989999999999999999


Q ss_pred             cCCCcccCCcceeecccC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          289 AMPPFLGGGEMISDVFLD-HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       289 ~l~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      .+++...||+........ ...+.....+++.|++++.+.+++..+++++.+.+++.+.++..++.+++.+.|.+++|+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  323 (406)
T 1kmj_A          245 EMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDL  323 (406)
T ss_dssp             HCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTE
T ss_pred             hcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence            998887777654332111 112233446778889999999999899999987789999999999999999999887664

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=100.00  E-value=1.6e-39  Score=310.29  Aligned_cols=324  Identities=61%  Similarity=0.948  Sum_probs=267.2

Q ss_pred             CCccchhhhhcCCCCcccccccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHH
Q 017640           42 TDSVSLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVA  121 (368)
Q Consensus        42 ~~~~~~~~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la  121 (368)
                      .....++..+|++|+....... +++++||+++.+++.|+.+.+++.+.+..+..+++.+.+.++....+...++++.++
T Consensus         4 ~~~~~~~~~~r~~f~~~~~~~~-g~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la   82 (420)
T 1t3i_A            4 LQIPSLAATVRQDFPILNQEIN-GHPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVA   82 (420)
T ss_dssp             ---CCHHHHHGGGCGGGSCEET-TEECEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHhCCccccccC-CCceEEecCCccCCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHH
Confidence            3456789999999998843211 245899999999999999999999999887666654444444444677889999999


Q ss_pred             HHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHH
Q 017640          122 AFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKL  201 (368)
Q Consensus       122 ~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l  201 (368)
                      +++|.+++++|++|+|+|+|+.+++.++....+++||+|++++++|++....+...++..|++++.++.++++.+|+++|
T Consensus        83 ~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l  162 (420)
T 1t3i_A           83 KFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHF  162 (420)
T ss_dssp             HHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHH
T ss_pred             HHcCCCCCCeEEEcCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHH
Confidence            99999323499999999999999999872101678999999999999987777777778899999999988888999999


Q ss_pred             HHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEE
Q 017640          202 KEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLF  281 (368)
Q Consensus       202 ~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~  281 (368)
                      ++++++++++|++++++||||.++|+++|.++|++||+++|+|++|+.+..+++....++|++++|+||.+|+.|+|+++
T Consensus       163 ~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~g~G~~~  242 (420)
T 1t3i_A          163 KTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLY  242 (420)
T ss_dssp             HHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTTCEEEE
T ss_pred             HHhhCCCceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCccCchhhcCCCEEEEehhhhcCCCceEEEE
Confidence            99999999999999999999999999999999999999999999999887765665567999999999999998999999


Q ss_pred             EcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Q 017640          282 GKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQ  361 (368)
Q Consensus       282 ~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~  361 (368)
                      +++++++.+++...+|+...........+.....++..|++++.+.+++..+++++.+.+++.+.++..++.+++.+.|.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~  322 (420)
T 1t3i_A          243 GKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLG  322 (420)
T ss_dssp             ECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888777666543332222233344567778899999999998899999888899999999999999999999


Q ss_pred             hhcCC
Q 017640          362 ERHNT  366 (368)
Q Consensus       362 ~~~g~  366 (368)
                      +++|+
T Consensus       323 ~~~g~  327 (420)
T 1t3i_A          323 QIPQL  327 (420)
T ss_dssp             TCTTE
T ss_pred             hCCCe
Confidence            87664

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=100.00  E-value=1.1e-36  Score=287.86  Aligned_cols=305  Identities=23%  Similarity=0.319  Sum_probs=250.2

Q ss_pred             hhhcCCCCcccccccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHhh-ccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC
Q 017640           49 HITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYN-SNVHRGIHFLSAKATDEYELARKKVAAFINAS  127 (368)
Q Consensus        49 ~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~  127 (368)
                      +.+|++|+..       ++.+|||.+..++.|+.+.+++.+.+.... .+++  .+.......+...++++.+++++|.+
T Consensus         5 ~~~r~~f~~~-------~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~--~~~~y~~~~~~~~~l~~~la~~~g~~   75 (390)
T 1elu_A            5 TPSLHQFPGL-------ANKTYFNFGGQGILPTVALEAITAMYGYLQENGPF--SIAANQHIQQLIAQLRQALAETFNVD   75 (390)
T ss_dssp             -----CCGGG-------TTSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCSS--SHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHhcCCC-------CCeEEecCCccCCCCHHHHHHHHHHHHHHhccCCc--chhhHHHHHHHHHHHHHHHHHHcCCC
Confidence            4678999977       578999999999999999999999887642 1221  11111122467889999999999987


Q ss_pred             CCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC--CCCCCCHHHHHHhc
Q 017640          128 DSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDESPDLDKLKEML  205 (368)
Q Consensus       128 ~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~l  205 (368)
                      ++ +|++|+|+++++..++.++   .+++||+|++.+++|++....+..+++..|++++.++.+  .++.+|+++|++++
T Consensus        76 ~~-~v~~~~g~t~a~~~~~~~~---~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i  151 (390)
T 1elu_A           76 PN-TITITDNVTTGCDIVLWGL---DWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHL  151 (390)
T ss_dssp             GG-GEEEESSHHHHHHHHHHHS---CCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTC
T ss_pred             HH-HEEEeCChHHHHHHHHhCC---CCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhc
Confidence            64 8999999999999999987   368999999999999998877777777789999999987  57888999999999


Q ss_pred             ccCceEEEEcccccccccccCHHHHHHHHH----hcCCEEEEecCCcCCcccccCCCCCccEEEecCcC-cCCCCcceEE
Q 017640          206 SRKTKLVVIHHISNMLASILPIEEIVHWSH----DVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFL  280 (368)
Q Consensus       206 ~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~----~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~G~G~l  280 (368)
                      ++++++|++++++||||.++|+++|.++|+    +||+++|+|++|+.|..++++...++|++++|+|| .+|+.|+|++
T Consensus       152 ~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~  231 (390)
T 1elu_A          152 GPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGL  231 (390)
T ss_dssp             CTTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTCEEE
T ss_pred             CCCceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcCCChhhcCCCEEEccccccccCCCceEEE
Confidence            989999999999999999999999999999    99999999999999888777767789999999999 7888889999


Q ss_pred             EEcccccccCCCcccCCcceeeccc-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHH
Q 017640          281 FGKSDLLSAMPPFLGGGEMISDVFL-DHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG-MQKIHAYEVKWIICSII  358 (368)
Q Consensus       281 ~~~~~li~~l~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g-~~~i~~~~~~l~~~l~~  358 (368)
                      ++++++++.+.+...||......+. ....+.+...++..||++...++++..+++.+.+.+ ++.+.++.+++.+++.+
T Consensus       232 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~  311 (390)
T 1elu_A          232 YIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWR  311 (390)
T ss_dssp             EECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             EECHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            9999999999887777665432221 011112223466778999999999999999988877 89999999999999999


Q ss_pred             HHHhhcCC
Q 017640          359 VIQERHNT  366 (368)
Q Consensus       359 ~l~~~~g~  366 (368)
                      .|.+++|+
T Consensus       312 ~L~~~~g~  319 (390)
T 1elu_A          312 GLNQLPHV  319 (390)
T ss_dssp             HHHHSTTE
T ss_pred             HHHhcCCc
Confidence            99987664

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=3e-37  Score=293.57  Aligned_cols=297  Identities=23%  Similarity=0.368  Sum_probs=250.5

Q ss_pred             hhhhcCCCCcccccccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC
Q 017640           48 GHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS  127 (368)
Q Consensus        48 ~~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~  127 (368)
                      ...+|++||.+.      ++.+|||+++.+++++.+.+++.+.+.....++. +.+..+....+..+++++.+++++|.+
T Consensus        13 ~~~~r~~fp~~~------~~~~~ld~~~~~~~~~~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~g~~   85 (406)
T 3cai_A           13 VARVRGLHPSLG------DGWVHFDAPAGMLIPDSVATTVSTAFRRSGASTV-GAHPSARRSAAVLDAAREAVADLVNAD   85 (406)
T ss_dssp             HHHHHHTCTTTT------SSCEECBGGGCCCCCHHHHHHHHHHHHHCCSSSC-SSSHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHhhhhcC------CCeEEEeCCCcCCCCHHHHHHHHHHHHhcCCCCC-CccHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            457899999982      4589999999999999999999999887655553 344455556788889999999999996


Q ss_pred             CCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC-CCCCCCHHHHHHhcc
Q 017640          128 DSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN-DDESPDLDKLKEMLS  206 (368)
Q Consensus       128 ~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~l~  206 (368)
                      ++ +|++|+|+|+++..++.++.. .+++||+|++++++|+++...+..+++..|++++.++++ +++.+|+++|+++++
T Consensus        86 ~~-~v~~~~g~t~al~~~~~~l~~-~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~  163 (406)
T 3cai_A           86 PG-GVVLGADRAVLLSLLAEASSS-RAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLIS  163 (406)
T ss_dssp             GG-GEEEESCHHHHHHHHHHHTGG-GGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCC
T ss_pred             CC-eEEEeCChHHHHHHHHHHHhh-ccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhC
Confidence            54 999999999999999987621 157899999999999998888887777679999999998 678899999999999


Q ss_pred             cCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcce-EEEEccc
Q 017640          207 RKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIG-FLFGKSD  285 (368)
Q Consensus       207 ~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G-~l~~~~~  285 (368)
                      +++++|++++++||||.++|+++|.++|+++|+++|+|++|+.|..++++...++|++++|+||++||. +| +++++++
T Consensus       164 ~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~~g~~-~G~~~~~~~~  242 (406)
T 3cai_A          164 KSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLDIRETDADVVTVNAHAWGGPP-IGAMVFRDPS  242 (406)
T ss_dssp             TTEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCCCCHHHHCCSEEEEEGGGGTSCS-CEEEEESCHH
T ss_pred             CCceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCCCchhcCCCEEEeehhhhcCCC-cCeEEEEehH
Confidence            999999999999999999999999999999999999999999887766665668999999999998875 78 9999999


Q ss_pred             ccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC--------------HHHHHHHHHH
Q 017640          286 LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG--------------MQKIHAYEVK  351 (368)
Q Consensus       286 li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g--------------~~~i~~~~~~  351 (368)
                      +++.+++....++.            ....++..||++..+++++..+++++...|              ++.+.++..+
T Consensus       243 ~~~~l~~~~~~~~~------------~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  310 (406)
T 3cai_A          243 VMNSFGSVSTNPYA------------TGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNR  310 (406)
T ss_dssp             HHHTSCCCCSCTTC------------CGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhcCCcccCCCC------------CccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHH
Confidence            88887765321110            012456788999999999999999888755              6889999999


Q ss_pred             HHHHHHHHHHhhcCC
Q 017640          352 WIICSIIVIQERHNT  366 (368)
Q Consensus       352 l~~~l~~~l~~~~g~  366 (368)
                      +++++.+.|.+++|+
T Consensus       311 ~~~~l~~~L~~~~~~  325 (406)
T 3cai_A          311 VFDYLMVSLRSLPLV  325 (406)
T ss_dssp             HHHHHHHHHHTCTTE
T ss_pred             HHHHHHHHHhcCCCe
Confidence            999999999887664

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=100.00  E-value=1.2e-36  Score=290.85  Aligned_cols=285  Identities=25%  Similarity=0.318  Sum_probs=247.8

Q ss_pred             CCCeEEeccCCCCCCcHHHHHHHHHHHH--HhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHH
Q 017640           65 SKKLVYLDNAATSQKPIAVLKALQNYYE--AYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI  142 (368)
Q Consensus        65 ~~~~i~l~~~~~~~~~~~v~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~  142 (368)
                      +++.+|||+++.+++++.+.+++.+.+.  ..+.+++.+.+..++...+..+++++.+++++|.+++ +|++|+|+++|+
T Consensus        20 ~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-~v~~~~ggt~a~   98 (423)
T 3lvm_A           20 MKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPR-EIVFTSGATESD   98 (423)
T ss_dssp             CCSSEECBTTTCCCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGG-GEEEESSHHHHH
T ss_pred             cCCCEeecCCCcCCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCC-eEEEeCChHHHH
Confidence            4788999999999999999999998887  5556665435566677788899999999999999764 999999999999


Q ss_pred             HHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccc
Q 017640          143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLA  222 (368)
Q Consensus       143 ~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG  222 (368)
                      .+++.++.....++||+|++++++|++....+..+ +..|++++.++.++++.+|+++|++++++++++|++++++||||
T Consensus        99 ~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG  177 (423)
T 3lvm_A           99 NLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQL-EREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIG  177 (423)
T ss_dssp             HHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHH-HHTTCEEEEECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTC
T ss_pred             HHHHHHHHHhhccCCCEEEECCccchHHHHHHHHH-HHcCCEEEEeccCCCCccCHHHHHHhcCCCcEEEEEeCCCCCCc
Confidence            99999872111247999999999999987766554 66799999999999999999999999999999999999999999


Q ss_pred             cccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCcceee
Q 017640          223 SILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISD  302 (368)
Q Consensus       223 ~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~  302 (368)
                      .++|+++|.++|++||+++|+|++|+.+..+++....++|++++|+||++|+.|+|+++++++.++.+.+...+++.   
T Consensus       178 ~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~g~G~~~~~~~~~~~~~~~~~~~~~---  254 (423)
T 3lvm_A          178 VVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGH---  254 (423)
T ss_dssp             BBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTSCCSEEEEESTTTTSCSSCEEEEECBTTBCCCCCSSCSSCT---
T ss_pred             cccCHHHHHHHHHHcCCEEEEEhhhhcCCCCcChhhcCCCEEEechHHhcCCCCeEEEEEeccccCCCCccccCCcc---
Confidence            99999999999999999999999999988877777788999999999999999999999999998888877765543   


Q ss_pred             cccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          303 VFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       303 ~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                                 ..++..++++...++++..+++.+... ++.+.++..++.+++.+.|.+++|+
T Consensus       255 -----------~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~  306 (423)
T 3lvm_A          255 -----------ERGMRSGTLPVHQIVGMGEAYRIAKEE-MATEMERLRGLRNRLWNGIKDIEEV  306 (423)
T ss_dssp             -----------TTTTCCSCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTSTTE
T ss_pred             -----------cccccCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCE
Confidence                       134667899999999999999988775 8899999999999999999887664

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=100.00  E-value=6.4e-37  Score=296.76  Aligned_cols=312  Identities=15%  Similarity=0.134  Sum_probs=252.1

Q ss_pred             hhhcCCCCcccccc---------cCCCCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhh-HHHHHHHHHHHH
Q 017640           49 HITRPDFPILHQEV---------YGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLS-AKATDEYELARK  118 (368)
Q Consensus        49 ~~~r~~f~~~~~~~---------~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~  118 (368)
                      ..+|++|+......         +.+++.+|||+++.++.|+.+.+++.+.+..+...... .+..+ ..+.+..+++++
T Consensus        40 ~~~r~~f~~~~~~~~~~~~~~~~~~~~~~iyld~~~~g~~p~~v~~~i~~~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~  118 (465)
T 3e9k_A           40 RHFRECFYIPKIQDLPPVDLSLVNKDENAIYFLGNSLGLQPKMVKTYLEEELDKWAKIAAY-GHEVGKRPWITGDESIVG  118 (465)
T ss_dssp             GGGGGGEECCBGGGSTTCCGGGSCTTCBCEECBTTTSCCEETTHHHHHHHHHHHHHHHGGG-GGTSSSSCGGGTTHHHHG
T ss_pred             HHHHHhcCCCCcccccccccccccCCCCeEEecCCccCCChHHHHHHHHHHHHHHHhhCCc-ccccCCccHHHhHHHHHH
Confidence            45788888654211         10247899999999999999988888877654322111 11111 123345567899


Q ss_pred             HHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEE-----EEEeCCCC
Q 017640          119 KVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANL-----KFLNLNDD  193 (368)
Q Consensus       119 ~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v-----~~v~~~~~  193 (368)
                      ++++++|++++ +|++|+|+|+++.+++.++.. +.++|++|++.+++|++....+...++..|+++     ..++.+.+
T Consensus       119 ~la~~~g~~~~-~v~~t~g~t~al~~~~~~~~~-~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~  196 (465)
T 3e9k_A          119 LMKDIVGANEK-EIALMNALTVNLHLLMLSFFK-PTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGE  196 (465)
T ss_dssp             GGHHHHTCCGG-GEEECSCHHHHHHHHHHHHCC-CCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTC
T ss_pred             HHHHHcCCCcC-CEEEECCHHHHHHHHHHHhcc-ccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCC
Confidence            99999999864 999999999999999999821 123455699999999999888888888889874     34466667


Q ss_pred             CCCCHHHHHHhcc---cCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcC
Q 017640          194 ESPDLDKLKEMLS---RKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK  270 (368)
Q Consensus       194 ~~~d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K  270 (368)
                      +.+|+++|+++++   +++++|++++++||||.+.|+++|.++|++||+++++|++|+.|..++++..+++|++++|+||
T Consensus       197 ~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~~~D~~~~s~~K  276 (465)
T 3e9k_A          197 ETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDWGVDFACWCSYK  276 (465)
T ss_dssp             SSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCCEEEECSSS
T ss_pred             CccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhcCCCEEEECccc
Confidence            8899999999996   6789999999999999999999999999999999999999999999888888899999999999


Q ss_pred             cC--CCCcceEEEEcccccccCCCcccCCccee--ecc--cCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHH
Q 017640          271 MC--GPTGIGFLFGKSDLLSAMPPFLGGGEMIS--DVF--LDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQK  344 (368)
Q Consensus       271 ~~--g~~G~G~l~~~~~li~~l~~~~~g~~~~~--~~~--~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~  344 (368)
                      ++  ||.|+|++++++++++.+.+...||....  ..+  .....+.....+|+.||+++.+++++.++++.+.+.|++.
T Consensus       277 ~l~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~  356 (465)
T 3e9k_A          277 YLNAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKA  356 (465)
T ss_dssp             TTCCCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred             ccccCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHH
Confidence            77  56669999999999999988887765432  111  1224455667899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q 017640          345 IHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       345 i~~~~~~l~~~l~~~l~~~  363 (368)
                      ++++..++.+++.+.|.++
T Consensus       357 ~~~~~~~~~~~l~~~L~~~  375 (465)
T 3e9k_A          357 LRKKSVLLTGYLEYLIKHN  375 (465)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999886

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=100.00  E-value=3.6e-36  Score=282.98  Aligned_cols=278  Identities=26%  Similarity=0.412  Sum_probs=239.4

Q ss_pred             eEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHH
Q 017640           68 LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAY  147 (368)
Q Consensus        68 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~  147 (368)
                      +||||+++.+++++.+.+++.+.+.....+++. .+..+....+..+++++++++++|.+++ +|++|+|+++++.+++.
T Consensus         1 ~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~-~i~~~~g~~~a~~~~~~   78 (382)
T 4hvk_A            1 MAYFDYTSAKPVDERILEAMLPYMTESFGNPSS-VHSYGFKAREAVQEAREKVAKLVNGGGG-TVVFTSGATEANNLAII   78 (382)
T ss_dssp             -CBCBTTTCCCCCHHHHHHHHHHHHTSCCCTTC-SSHHHHHHHHHHHHHHHHHHHHTTCTTE-EEEEESSHHHHHHHHHH
T ss_pred             CEeecCCCcCCCCHHHHHHHHHHHHhhcCCCcc-cchHHHHHHHHHHHHHHHHHHHcCCCcC-eEEEECCchHHHHHHHH
Confidence            379999999999999999999999887677764 4556667788899999999999999764 89999999999999999


Q ss_pred             HccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCH
Q 017640          148 SWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPI  227 (368)
Q Consensus       148 ~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l  227 (368)
                      ++.....++||+|++++++|++....+..+ +..|++++.++.++++.+|+++|++++++++++|++++++||||.+.|+
T Consensus        79 ~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~-~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~  157 (382)
T 4hvk_A           79 GYAMRNARKGKHILVSAVEHMSVINPAKFL-QKQGFEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPV  157 (382)
T ss_dssp             HHHHHHGGGCCEEEEETTCCHHHHHHHHHH-HHTTCEEEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCH
T ss_pred             HhhhhhcCCCCEEEECCCCcHHHHHHHHHH-HhcCCEEEEeccCCCCCcCHHHHHHHhccCceEEEEECCCCCceeeCCH
Confidence            881000189999999999999987766554 5679999999999889999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCcceeecccCC
Q 017640          228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDH  307 (368)
Q Consensus       228 ~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~  307 (368)
                      ++|.++|++||+ +|+|++|+.+..+++....+.|++++|+||++|+.|+|+++++++.  .+.+...++..        
T Consensus       158 ~~i~~l~~~~~~-li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~--~~~~~~~~~~~--------  226 (382)
T 4hvk_A          158 EEISEVLAGKAA-LHIDATASVGQIEVDVEKIGADMLTISSNDIYGPKGVGALWIRKEA--KLQPVILGGGQ--------  226 (382)
T ss_dssp             HHHHHHHSSSSE-EEEECTTTBTTBCCCHHHHTCSEEEEESGGGTSCTTCEEEEEETTC--CCCCSSCSSCT--------
T ss_pred             HHHHHHHHHcCE-EEEEhHHhcCCCCCCchhcCCCEEEEeHHHhcCCCceEEEEEcCcc--CcCcccccCCC--------
Confidence            999999999999 9999999988877776666899999999999999999999998876  55666555433        


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          308 STFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       308 ~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                            ..++..++++...+.++..++++..+ +++.+.++..++++++.+.|.+++|+
T Consensus       227 ------~~~~~~~~~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~  278 (382)
T 4hvk_A          227 ------ENGLRSGSENVPSIVGFGKAAEITAM-EWREEAERLRRLRDRIIDNVLKIEES  278 (382)
T ss_dssp             ------GGGTSCSCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTSTTE
T ss_pred             ------cCccccCCcCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence                  24567889999999999999987664 68899999999999999999987664

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=100.00  E-value=6.6e-36  Score=281.64  Aligned_cols=273  Identities=26%  Similarity=0.399  Sum_probs=231.2

Q ss_pred             EEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHH
Q 017640           69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS  148 (368)
Q Consensus        69 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~  148 (368)
                      +|||+++.+++++.+++++.+.+.....+++. .+..+....+...++++++++++|.+++ +|++|+|+++|+.+++.+
T Consensus         2 ~yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~~~g~t~a~~~~~~~   79 (382)
T 4eb5_A            2 AYFDYTSAKPVDERILEAMLPYMTESFGNPSS-VHSYGFKAREAVQEAREKVAKLVNGGGG-TVVFTSGATEANNLAIIG   79 (382)
T ss_dssp             CBCBTTTCCCCCHHHHHHHHHHHHTSCCCTTC-SSHHHHHHHHHHHHHHHHHHHHHTCTTE-EEEEESSHHHHHHHHHHH
T ss_pred             eeeccCCCCCCCHHHHHHHHHHHHhccCCCCC-CcHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEcCchHHHHHHHHHH
Confidence            79999999999999999999998875555543 3444555678889999999999999754 899999999999999998


Q ss_pred             ccCCCC----CCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccc
Q 017640          149 WGLSNL----KSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI  224 (368)
Q Consensus       149 ~~~~~~----~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~  224 (368)
                      +    .    ++||+|++++++|++....+.. ++..|++++.+++++++.+|+++|++++++++++|++++++||||.+
T Consensus        80 l----~~~~~~~gd~Vl~~~~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~  154 (382)
T 4eb5_A           80 Y----AMRNARKGKHILVSAVEHMSVINPAKF-LQKQGFEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTI  154 (382)
T ss_dssp             H----HHHHGGGCCEEEEETTCCHHHHHHHHH-HTTTTCEEEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBB
T ss_pred             H----HhhccCCCCEEEECCCcchHHHHHHHH-HHhCCcEEEEeccCCCCccCHHHHHHHhcCCCeEEEEeccCCCcccc
Confidence            8    5    7899999999999987665543 34469999999998888899999999999899999999999999999


Q ss_pred             cCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCcceeecc
Q 017640          225 LPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVF  304 (368)
Q Consensus       225 ~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~  304 (368)
                      +|+++|.++|++||++ |+|++|+.+..++++...+.|++++|+||++|+.|+|+++++++.  .+++...+++.     
T Consensus       155 ~~l~~i~~l~~~~~~~-i~D~a~~~g~~~~~~~~~~~di~~~s~sK~~g~~g~G~~~~~~~~--~l~~~~~~~~~-----  226 (382)
T 4eb5_A          155 QPVEEISEVLAGKAAL-HIDATASVGQIEVDVEKIGADMLTISSNDIYGPKGVGALWIRKEA--KLQPVILGGGQ-----  226 (382)
T ss_dssp             CCHHHHHHHHTTSSEE-EEECTTTBTTBCCCHHHHTCSEEEEETGGGTCCSSCEEEEEETTC--CCCCSSCSSCT-----
T ss_pred             CCHHHHHHHHHHCCCE-EEEcchhcCCcccCccccCCCEEEeehHHhcCCCceEEEEEcccc--ccCceecCCCc-----
Confidence            9999999999999999 999999988766665555789999999999999899999998874  34444443321     


Q ss_pred             cCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          305 LDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       305 ~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                               ..++..++++...+.++..+++.+.+ +++.+.++..++++++.+.|.+++|+
T Consensus       227 ---------~~~~~~~~~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~  278 (382)
T 4eb5_A          227 ---------ENGLRSGSENVPSIVGFGKAAEITAM-EWREEAERLRRLRDRIIDNVLKIEES  278 (382)
T ss_dssp             ---------GGGTSCSCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTSTTE
T ss_pred             ---------cccccCCCccHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence                     13456779999999999999998776 58899999999999999999887654

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=100.00  E-value=2.6e-35  Score=279.50  Aligned_cols=278  Identities=22%  Similarity=0.321  Sum_probs=237.3

Q ss_pred             CCCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHH
Q 017640           65 SKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL  144 (368)
Q Consensus        65 ~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~  144 (368)
                      .++.+|||+++.+++++.+.+++.+.+.....+++. .+..+....+..+++++++++++|++++ +|++|+|+++|+.+
T Consensus        18 ~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~~~~~~-~v~~~~g~t~al~~   95 (400)
T 3vax_A           18 GSHMTYLDAAATTRVDQRVADIVLHWMTAEFGNAGS-RHEYGIRAKRGVERAREYLASTVSAEPD-ELIFTSGATESNNI   95 (400)
T ss_dssp             ----CCCCCCCCSSSCHHHHHHHHHHHHHHHSCSSC-HHHHHHHHHHHHHHHHHHHHHHTTCCGG-GEEEESCHHHHHHH
T ss_pred             cCCcEEecCCCCCCCCHHHHHHHHHHHHhccCCCcc-cchhHHHHHHHHHHHHHHHHHHcCCCCC-cEEEeCCHHHHHHH
Confidence            367899999999999999999999999887677653 4555566678889999999999999754 99999999999999


Q ss_pred             HHHHccCCCC----CCCC-EEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEccccc
Q 017640          145 VAYSWGLSNL----KSGD-EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISN  219 (368)
Q Consensus       145 ~~~~~~~~~~----~~gd-~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n  219 (368)
                      ++.++    .    ++|| +|++++++|+++...+..+ +..|++++.++.++++.+|+++|++++++++++|++++++|
T Consensus        96 ~~~~l----~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~-~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~n  170 (400)
T 3vax_A           96 ALLGL----APYGERTGRRHIITSAIEHKAVLEPLEHL-AGRGFEVDFLTPGPSGRISVEGVMERLRPDTLLVSLMHVNN  170 (400)
T ss_dssp             HHHTT----HHHHHHHTCCEEEEETTSCHHHHHHHHHH-HTTTCEEEEECCCTTCCCCHHHHHTTCCTTEEEEECCSBCT
T ss_pred             HHHHH----HHhhccCCCCEEEECccccHhHHHHHHHH-HhcCCeEEEEccCCCCCcCHHHHHHhcCCCceEEEEECCCC
Confidence            99987    5    7899 9999999999988777665 56799999999998999999999999999999999999999


Q ss_pred             ccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEE-Eccccc----ccCCCcc
Q 017640          220 MLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLF-GKSDLL----SAMPPFL  294 (368)
Q Consensus       220 ~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~-~~~~li----~~l~~~~  294 (368)
                      |||.+.|+++|.++|++||+++|+|++|+.+..++++... +|++++|+||++|+.|+|+++ ++++.+    ..+.+..
T Consensus       171 ptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~-~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~  249 (400)
T 3vax_A          171 ETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPGDLTTP-IDMISISGHKIGAPKGVGALVTRRREEMDDERVPLEPIM  249 (400)
T ss_dssp             TTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGGGGGSC-CSEEEEETGGGTSCSSCEEEEECBCSSSTTCBCCCCCSS
T ss_pred             CceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCcChhhc-CcEEEEeHHHhCCCCceEEEEEecchhccccccccCcee
Confidence            9999999999999999999999999999998887777766 999999999999998999999 888322    2444554


Q ss_pred             cCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          295 GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       295 ~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      .++..              ..++..++++...++++..+++.+.+ +++.+.++..++++++.+.|. .+|+
T Consensus       250 ~~~~~--------------~~~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~~l~~~L~-~~~~  305 (400)
T 3vax_A          250 FGGGQ--------------ERKLRPGTLPVPLIMGLAEAAKIFEA-EHAQWQVAAQDLRSRLLAGLA-STSF  305 (400)
T ss_dssp             CSSCT--------------GGGTSCSCCCHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHT-TTTC
T ss_pred             cCCCc--------------eeeeecCCCCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhhC-CCCE
Confidence            43332              24566889999999999999998776 789999999999999999998 6664

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=100.00  E-value=1.4e-34  Score=272.63  Aligned_cols=277  Identities=25%  Similarity=0.364  Sum_probs=231.5

Q ss_pred             EEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHH
Q 017640           69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS  148 (368)
Q Consensus        69 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~  148 (368)
                      +|||+++.+++++.+.+++.+.+...+.+++. .+..++...+...++++.+++++|.+++ +|++|+|+++|+..++.+
T Consensus         3 ~yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~~~g~t~a~~~~~~~   80 (384)
T 1eg5_A            3 VYFDNNATTRVDDRVLEEMIVFYREKYGNPNS-AHGMGIEANLHMEKAREKVAKVLGVSPS-EIFFTSCATESINWILKT   80 (384)
T ss_dssp             EECBTTTCCCCCHHHHHHHHHHHHTCCCCTTC-SSHHHHHHHHHHHHHHHHHHHHHTSCGG-GEEEESCHHHHHHHHHHH
T ss_pred             EEEecCccCCCCHHHHHHHHHHHHhcCCCCcc-ccHHHHHHHHHHHHHHHHHHHHcCCCCC-eEEEECCHHHHHHHHHHh
Confidence            79999999999999999999998865555543 3455666778889999999999998764 999999999999999999


Q ss_pred             ccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHH
Q 017640          149 WGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIE  228 (368)
Q Consensus       149 ~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~  228 (368)
                      +.....++||+|++++++|++....+.. ++..|++++.++.++++.+|+++|++++++++++|++++++||||.++|++
T Consensus        81 ~~~~~~~~gd~vl~~~~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~  159 (384)
T 1eg5_A           81 VAETFEKRKRTIITTPIEHKAVLETMKY-LSMKGFKVKYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVE  159 (384)
T ss_dssp             HHHHTTTTCCEEEECTTSCHHHHHHHHH-HHHTTCEEEECCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHH
T ss_pred             hhhhccCCCCEEEECCCCchHHHHHHHH-HHhcCCEEEEEccCCCCccCHHHHHHHhCCCCeEEEEECCCCCcccccCHH
Confidence            8210127899999999999987665543 356799999999988898999999999998999999999999999999999


Q ss_pred             HHHHHHHhcC--CEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCcceeecccC
Q 017640          229 EIVHWSHDVG--AKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLD  306 (368)
Q Consensus       229 ~i~~l~~~~g--~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~  306 (368)
                      +|.++|++||  +++|+|++|+++..++++...+.|++++|+||++|++|+|++++++++  .+.+.+.++..       
T Consensus       160 ~i~~l~~~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~G~G~~~~~~~~--~~~~~~~~~~~-------  230 (384)
T 1eg5_A          160 DVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGV--PIRPLIHGGGQ-------  230 (384)
T ss_dssp             HHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTTCEEEEECTTS--CCCCSBCSSCT-------
T ss_pred             HHHHHHHhcCCceEEEEEhhhhcCCcccCchhcCCCEEEecHHHhcCCCceEEEEEcCCC--ccccccccCcc-------
Confidence            9999999999  999999999988776666666899999999999999889999999886  33433332211       


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          307 HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       307 ~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                             ..++..++++...+.++..+++.+.+ .++.+.++..++.+++.+.|.+ +|+
T Consensus       231 -------~~~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~-~g~  281 (384)
T 1eg5_A          231 -------ERGLRSGTQNVPGIVGAARAMEIAVE-ELSEAAKHMEKLRSKLVSGLMN-LGA  281 (384)
T ss_dssp             -------TTTTBCSCCCHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHT-TTC
T ss_pred             -------cccccCCCCChHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHhCC-CCe
Confidence                   12445678999999999999998654 6889999999999999999987 454

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=100.00  E-value=5e-35  Score=280.64  Aligned_cols=289  Identities=26%  Similarity=0.300  Sum_probs=232.0

Q ss_pred             cCCCCcccccccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCc
Q 017640           52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGE  131 (368)
Q Consensus        52 r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~  131 (368)
                      +++|+..       ++.+|||+++.+++++.+++++.+.+.....+|+ +.+..+....+..+++|+++++++|.+++ +
T Consensus        10 ~~~~~~~-------~~~~~Ld~~~~~~~~~~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~g~~~~-~   80 (432)
T 3a9z_A           10 GSVESPP-------NRKVYMDYNATTPLEPEVIQAVTEAMKEAWGNPS-SSYVAGRKAKDIINTARASLAKMIGGKPQ-D   80 (432)
T ss_dssp             ---------------CCEECBTTTCCCCCHHHHHHHHHHHHHCCSCTT-CSSHHHHHHHHHHHHHHHHHHHHHTCCGG-G
T ss_pred             ccccCCC-------CCcEEeeCCccCCCCHHHHHHHHHHHHHhcCCCc-cCcHHHHHHHHHHHHHHHHHHHHcCCCcC-e
Confidence            3566665       6789999999999999999999999887655665 34455556678889999999999999754 9


Q ss_pred             EEEeCCHHHHHHHHHHHccCCCC----CCCC-------------EEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC-C
Q 017640          132 IVFTKNATEAINLVAYSWGLSNL----KSGD-------------EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-D  193 (368)
Q Consensus       132 v~~t~g~t~a~~~~~~~~~~~~~----~~gd-------------~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~  193 (368)
                      |++|+|+++++.+++.++.....    ++||             .|+++..+|+++...+..+++..|++++.+++++ +
T Consensus        81 v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~  160 (432)
T 3a9z_A           81 IIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVN  160 (432)
T ss_dssp             EEEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTT
T ss_pred             EEEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCccc
Confidence            99999999999999988710000    4675             4555555666666677777777899999999986 7


Q ss_pred             CCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcC----------CEEEEecCCcCCcccccCCCCCccE
Q 017640          194 ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVG----------AKVLVDACQSVPHMVVDVQGLDADF  263 (368)
Q Consensus       194 ~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g----------~~li~D~a~~~~~~~~~~~~~~~d~  263 (368)
                      +.+|+++|++++++++++|++++++||||.++|+++|.++|+++|          +++|+|++|+.+..++++...++|+
T Consensus       161 ~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~~~~~~~~~d~  240 (432)
T 3a9z_A          161 GQVEVEDILAAVRPTTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDF  240 (432)
T ss_dssp             SSCCHHHHHHTCCTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSCCCHHHHCCSE
T ss_pred             CCcCHHHHHHhccCCceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcccChhhcCCCE
Confidence            889999999999989999999999999999999999999999999          9999999999887766655567999


Q ss_pred             EEecCcCcCCCCcceEEEEcccc-cccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCH
Q 017640          264 LVASSHKMCGPTGIGFLFGKSDL-LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGM  342 (368)
Q Consensus       264 ~~~s~~K~~g~~G~G~l~~~~~l-i~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~  342 (368)
                      +++|+||++|+. +|+++++++. ...+.+...|++.              ..++..||++...++++.++++++.+ ++
T Consensus       241 ~~~s~~K~~g~~-~G~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~a~~aal~~~~~-~~  304 (432)
T 3a9z_A          241 LTIVGHKFYGPR-IGALYVRGVGKLTPLYPMLFGGGQ--------------ERNFRPGTENTPMIAGLGKAADLVSE-NC  304 (432)
T ss_dssp             EEEEGGGTTCCS-CEEEEETTBTTTBCCCCSCCSSCG--------------GGGTSCSCCCHHHHHHHHHHHHHHHH-HH
T ss_pred             EEEehhHhcCCc-ceEEEEccccccCCcCceeecCCc--------------cccccCCCcCHHHHHHHHHHHHHHHh-hH
Confidence            999999999876 9999999886 5566666655543              14566789999999999999998776 68


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcC
Q 017640          343 QKIHAYEVKWIICSIIVIQERHN  365 (368)
Q Consensus       343 ~~i~~~~~~l~~~l~~~l~~~~g  365 (368)
                      +.+.++..++++++.+.|.+++|
T Consensus       305 ~~~~~~~~~~~~~l~~~L~~~~g  327 (432)
T 3a9z_A          305 ETYEAHMRDIRDYLEERLEAEFG  327 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHHHhccC
Confidence            89999999999999999988654

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=100.00  E-value=2.3e-34  Score=272.32  Aligned_cols=286  Identities=17%  Similarity=0.143  Sum_probs=232.6

Q ss_pred             CCCcccccccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEE
Q 017640           54 DFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIV  133 (368)
Q Consensus        54 ~f~~~~~~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~  133 (368)
                      +||.+       ++.+|||+++.+++++.+++++.+.+..     +     .++...+...++|+.+++++|.++ ++|+
T Consensus         2 ~fp~~-------~~~~yl~~~~~~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~l~~~la~~~g~~~-~~v~   63 (392)
T 2z9v_A            2 RYPEH-------ADPVITLTAGPVNAYPEVLRGLGRTVLY-----D-----YDPAFQLLYEKVVDKAQKAMRLSN-KPVI   63 (392)
T ss_dssp             CCCTT-------SCCSEECSSSCCCCCHHHHHHTTSCCCC-----T-----TSHHHHHHHHHHHHHHHHHTTCSS-CCEE
T ss_pred             CcccC-------CCcceeecCCCcCCCHHHHHHHhccccc-----c-----ccHHHHHHHHHHHHHHHHHhCCCC-CEEE
Confidence            57776       5668999999999999999998765421     1     123456778899999999999975 4999


Q ss_pred             EeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhc--ccCceE
Q 017640          134 FTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEML--SRKTKL  211 (368)
Q Consensus       134 ~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l--~~~~~~  211 (368)
                      +|+|+|+++.+++.++    +++||+|++++++|++..  +..+++..|++++.++.++++.+|+++|++++  .+++++
T Consensus        64 ~t~g~t~a~~~~~~~~----~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~  137 (392)
T 2z9v_A           64 LHGEPVLGLEAAAASL----ISPDDVVLNLASGVYGKG--FGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITV  137 (392)
T ss_dssp             ESSCTHHHHHHHHHHH----CCTTCCEEEEESSHHHHH--HHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCE
T ss_pred             EeCCchHHHHHHHHHh----cCCCCEEEEecCCcccHH--HHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCCcE
Confidence            9999999999999998    789999999999998863  45556667999999999888889999999999  457899


Q ss_pred             EEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcC-cCCCCcceEEEEcccccccC
Q 017640          212 VVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAM  290 (368)
Q Consensus       212 v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~G~G~l~~~~~li~~l  290 (368)
                      |++++++||||.++|+++|.++|++||+++|+|++|+.+..++++...++|++++|+|| ++|+.|+|++++++++++.+
T Consensus       138 v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~~~~~l  217 (392)
T 2z9v_A          138 VSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSERAWAKM  217 (392)
T ss_dssp             EEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBSCCGGGGTCSEEEECSSSTTCCCSCCEEEEECHHHHHHH
T ss_pred             EEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCCcccccccccceEEEecCcccccCCCceeEEEECHHHHHHh
Confidence            99999999999999999999999999999999999998887767666689999999999 67788999999999988776


Q ss_pred             CCcccCCcceeecccCCC-CCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          291 PPFLGGGEMISDVFLDHS-TFAD-PPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       291 ~~~~~g~~~~~~~~~~~~-~~~~-~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      ++...|.+.   ...+.. .+.. ...++..++++...++++..+++.+.+.|++.+.++..++.+++.+.|.++ |++
T Consensus       218 ~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~  292 (392)
T 2z9v_A          218 KANPLAPRA---SMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAM-GLS  292 (392)
T ss_dssp             HTCTTSCCS---STTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             hhccCCCCc---eeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-CCe
Confidence            543321000   000000 0000 123455789999999999999999988889999999999999999999886 654

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=100.00  E-value=3.7e-34  Score=273.07  Aligned_cols=300  Identities=19%  Similarity=0.243  Sum_probs=236.5

Q ss_pred             chhhhhcCCCCcccccccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcC
Q 017640           46 SLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN  125 (368)
Q Consensus        46 ~~~~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~  125 (368)
                      +.+..+|++|+..       ++.+|||+++.++.|+.+.+++.+.+.....++... .....+..+...++++.+++++|
T Consensus        14 ~~~~~~r~~f~~~-------~~~~yld~~~~~~~~~~v~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~l~~~la~~~g   85 (416)
T 1qz9_A           14 DSLAPLRQQFALP-------EGVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIR-SWNSAGWRDLSERLGNRLATLIG   85 (416)
T ss_dssp             CTTGGGGGGBCCC-------TTCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGGG-HHHHTSGGGHHHHHHHHHHTTTT
T ss_pred             chhHHHHHhCCCC-------CCeEeecCCCcCCCcHHHHHHHHHHHHHHHhccCcc-ccchhhHHHHHHHHHHHHHHHcC
Confidence            3567789999977       678999999999999999999999887533332110 01111223667789999999999


Q ss_pred             CCCCCcEEEeCCHHHHHHHHHHHccCCCC----CCCCE-EEEcCCCCcccHHHHHHHHHHc--CCEEEEEeCCCCCCCCH
Q 017640          126 ASDSGEIVFTKNATEAINLVAYSWGLSNL----KSGDE-VILTVAEHHSAIVPWQLVAQKT--GANLKFLNLNDDESPDL  198 (368)
Q Consensus       126 ~~~~~~v~~t~g~t~a~~~~~~~~~~~~~----~~gd~-vl~~~~~~~s~~~~~~~~~~~~--g~~v~~v~~~~~~~~d~  198 (368)
                      .+++ +|++|+|+++++..++.++.  .+    ++||+ |++..++|+++...+..+++..  |++++.++.       +
T Consensus        86 ~~~~-~v~~~~g~t~al~~al~~~~--~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~-------~  155 (416)
T 1qz9_A           86 ARDG-EVVVTDTTSINLFKVLSAAL--RVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS-------P  155 (416)
T ss_dssp             CCTT-SEEECSCHHHHHHHHHHHHH--HHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS-------G
T ss_pred             CCcc-cEEEeCChhHHHHHHHHhhc--ccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc-------H
Confidence            9754 89999999999998888761  02    78886 5666678888777766666666  999999986       7


Q ss_pred             HHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcC-CCCcc
Q 017640          199 DKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMC-GPTGI  277 (368)
Q Consensus       199 ~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~-g~~G~  277 (368)
                      ++|++++++++++|++++++||||.+.|+++|.++|++||+++|+|++|+.|..++++...++|++++|+||++ ++.|+
T Consensus       156 ~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~g~~~  235 (416)
T 1qz9_A          156 EELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGS  235 (416)
T ss_dssp             GGHHHHCSTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTC
T ss_pred             HHHHHHhCCCceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcCCChhhcCCCEEEecCcccCCCCCCC
Confidence            88999998899999999999999999999999999999999999999999887766655567999999999964 56777


Q ss_pred             -eEEEEcccccccCCCcccCCcceeecc--cCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Q 017640          278 -GFLFGKSDLLSAMPPFLGGGEMISDVF--LDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWII  354 (368)
Q Consensus       278 -G~l~~~~~li~~l~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~  354 (368)
                       |++++++++++.+++...|+......+  .....+.....++..||++..+++++.++++.+.+.+++.+.++..++.+
T Consensus       236 ~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~  315 (416)
T 1qz9_A          236 QAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTD  315 (416)
T ss_dssp             CCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence             999999999888887665542211100  11112222345677889999999999999998877789999999999999


Q ss_pred             HHHHHHHhh
Q 017640          355 CSIIVIQER  363 (368)
Q Consensus       355 ~l~~~l~~~  363 (368)
                      ++.+.|.++
T Consensus       316 ~l~~~L~~~  324 (416)
T 1qz9_A          316 LFIELVEQR  324 (416)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999999886

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=100.00  E-value=7.2e-34  Score=268.08  Aligned_cols=294  Identities=14%  Similarity=0.156  Sum_probs=237.3

Q ss_pred             cchhhhhcCCCCcccccccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc
Q 017640           45 VSLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI  124 (368)
Q Consensus        45 ~~~~~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~  124 (368)
                      ..|+..+|++|+.+       +..+|+|+.+.+++++.+.+++.+.+..          .++....+..+++++.+++++
T Consensus         4 ~~~~~~~r~~f~~~-------~~~~~l~~~~~~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~~~~~la~~~   66 (386)
T 2dr1_A            4 MEFEEAFKEVYEMV-------KPKYKLFTAGPVACFPEVLEIMKVQMFS----------HRSKEYRKVHMDTVERLREFL   66 (386)
T ss_dssp             -CCHHHHHHHHHHH-------SCCSEECCSSSCCCCHHHHHHTTSCCCC----------TTSHHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHhhc-------CccceeecCCCcCCcHHHHHHHhccccc----------ccCHHHHHHHHHHHHHHHHHh
Confidence            46899999999876       3347999999999999999887665321          112234678889999999999


Q ss_pred             CCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHh
Q 017640          125 NASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEM  204 (368)
Q Consensus       125 ~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~  204 (368)
                      |.+..+++++|+|+++|+..++.++    +++||+|++.+++|++..  +...++..|++++.++.++++.+|+++|+++
T Consensus        67 g~~~~~~v~~~~g~t~a~~~~~~~l----~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~  140 (386)
T 2dr1_A           67 EVEKGEVLLVPSSGTGIMEASIRNG----VSKGGKVLVTIIGAFGKR--YKEVVESNGRKAVVLEYEPGKAVKPEDLDDA  140 (386)
T ss_dssp             TCSSSEEEEESSCHHHHHHHHHHHH----SCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCHHHHHHH
T ss_pred             CCCCCcEEEEeCChHHHHHHHHHHh----hcCCCeEEEEcCCchhHH--HHHHHHHhCCceEEEecCCCCCCCHHHHHHH
Confidence            9973347999999999999999998    789999999999888742  5566677899999999988888999999999


Q ss_pred             c--ccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCC-CcceEEE
Q 017640          205 L--SRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGP-TGIGFLF  281 (368)
Q Consensus       205 l--~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~-~G~G~l~  281 (368)
                      +  .+++++|++++++||||.+.|+++|.++|++||+++|+|++|+.+..++++...++|++++|+||+++. .|+|+++
T Consensus       141 l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~g~G~~~  220 (386)
T 2dr1_A          141 LRKNPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKWGLDVVFSSSQKAFGVPPGLAIGA  220 (386)
T ss_dssp             HHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEEEETTSTTCCCSSCEEEE
T ss_pred             HhcCCCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCccccccccCCcEEEEeccccccCCCceEEEE
Confidence            9  568899999999999999999999999999999999999999988876677667899999999997764 4799999


Q ss_pred             EcccccccCCCcccCCcceeecccCCCCC-CCCC-CCCCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHH
Q 017640          282 GKSDLLSAMPPFLGGGEMISDVFLDHSTF-ADPP-SRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEVKWIICSII  358 (368)
Q Consensus       282 ~~~~li~~l~~~~~g~~~~~~~~~~~~~~-~~~~-~~~~~gt~~~~~~~a~~~al~~~~~~-g~~~i~~~~~~l~~~l~~  358 (368)
                      +++++++.+++....+...     +...+ .... .++..++++...++++..+++.+.+. +++.+.++.+++.+++.+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~  295 (386)
T 2dr1_A          221 FSERFLEIAEKMPERGWYF-----DIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVRE  295 (386)
T ss_dssp             ECHHHHHHHTTCTTCCSTT-----CHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ECHHHHHHHhcCCCCceEE-----eHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            9999887776432111100     00000 0000 13456789999999999999998887 789999999999999999


Q ss_pred             HHHhhcCCC
Q 017640          359 VIQERHNTT  367 (368)
Q Consensus       359 ~l~~~~g~t  367 (368)
                      .|.++ |++
T Consensus       296 ~L~~~-g~~  303 (386)
T 2dr1_A          296 GVREI-GLD  303 (386)
T ss_dssp             HHHHT-TCC
T ss_pred             HHHHc-CCe
Confidence            99887 654

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=100.00  E-value=2.8e-33  Score=264.96  Aligned_cols=297  Identities=15%  Similarity=0.144  Sum_probs=235.9

Q ss_pred             ccchhhhhcCCCCcccccccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHH
Q 017640           44 SVSLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAF  123 (368)
Q Consensus        44 ~~~~~~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~  123 (368)
                      .......+|++|+.+.      ...+|+++.+.+++++.+.+++.+.+..          ..+....+..+++++.++++
T Consensus        16 ~~~~~~~~r~~~~~~~------~~~~~l~~~~~~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~~~~~la~~   79 (393)
T 1vjo_A           16 IISINDNQRLQLEPLE------VPSRLLLGPGPSNAHPSVLQAMNVSPVG----------HLDPAFLALMDEIQSLLRYV   79 (393)
T ss_dssp             -CCCCCTTCCCCCSCC------CCCCEECSSSCCCCCHHHHHHHSSCCCC----------TTSHHHHHHHHHHHHHHHHH
T ss_pred             eeeecchhhhcCCccC------CccceeccCCCCCCCHHHHHHHhccccc----------ccCHHHHHHHHHHHHHHHHH
Confidence            3455677889999763      3347999999999999999998765421          11223567788999999999


Q ss_pred             cCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHH
Q 017640          124 INASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKE  203 (368)
Q Consensus       124 ~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~  203 (368)
                      +|.+++++|++|+|+++|+..++.++    +++||+|++.+|+|++.  .+...++..|++++.++.++++.+|+++|++
T Consensus        80 ~g~~~~~~v~~t~g~t~al~~~~~~~----~~~gd~Vl~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~  153 (393)
T 1vjo_A           80 WQTENPLTIAVSGTGTAAMEATIANA----VEPGDVVLIGVAGYFGN--RLVDMAGRYGADVRTISKPWGEVFSLEELRT  153 (393)
T ss_dssp             HTCCCSCEEEESSCHHHHHHHHHHHH----CCTTCEEEEEESSHHHH--HHHHHHHHTTCEEEEEECCTTCCCCHHHHHH
T ss_pred             hCCCCCcEEEEeCchHHHHHHHHHhc----cCCCCEEEEEcCChhHH--HHHHHHHHcCCceEEEecCCCCCCCHHHHHH
Confidence            99964227999999999999999998    78999999999988873  3556667789999999998888899999999


Q ss_pred             hccc-CceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCC-CCcceEEE
Q 017640          204 MLSR-KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCG-PTGIGFLF  281 (368)
Q Consensus       204 ~l~~-~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g-~~G~G~l~  281 (368)
                      ++++ ++++|++++++||||.+.|+++|.++|++||+++|+|++|++|..++++...++|++++|+||+++ +.|+|+++
T Consensus       154 ~l~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~di~~~s~sK~l~~~~~~G~l~  233 (393)
T 1vjo_A          154 ALETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFT  233 (393)
T ss_dssp             HHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSSCEEEE
T ss_pred             HHhhCCceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCccccCcCCcccccCccEEEEcCcccccCCCceEEEE
Confidence            9988 899999999999999999999999999999999999999998887777777789999999999665 55699999


Q ss_pred             EcccccccCCCc---ccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 017640          282 GKSDLLSAMPPF---LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSII  358 (368)
Q Consensus       282 ~~~~li~~l~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~  358 (368)
                      +++++++.++..   ..++........   .+ ....++..|+++...++++..+++.+.+.+++.++++..++.+++.+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~  309 (393)
T 1vjo_A          234 MSSRAIEKLQRRRTKVANWYLDMNLLG---KY-WGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWE  309 (393)
T ss_dssp             ECHHHHHHHHTCSSCCSCSTTCHHHHH---HH-HSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             ECHHHHHHHhccCCCCCceecCcHhhh---hh-hccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            999887765321   111100000000   00 00124445689999999999999998777899999999999999999


Q ss_pred             HHHhhcCCC
Q 017640          359 VIQERHNTT  367 (368)
Q Consensus       359 ~l~~~~g~t  367 (368)
                      .|.+. |++
T Consensus       310 ~L~~~-g~~  317 (393)
T 1vjo_A          310 RLEDI-GLS  317 (393)
T ss_dssp             HHHHT-TCC
T ss_pred             HHHHc-CCc
Confidence            99886 654

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=100.00  E-value=5.5e-33  Score=262.87  Aligned_cols=284  Identities=15%  Similarity=0.115  Sum_probs=226.9

Q ss_pred             CCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHH
Q 017640           66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV  145 (368)
Q Consensus        66 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~  145 (368)
                      ++.+|+++.+..++++.+.+++.+.+..     +     ......+...++++.+++++|.+++++|++|+|+|+|+..+
T Consensus        17 ~~~~~~~~~g~~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~   86 (393)
T 2huf_A           17 TPNKLLMGPGPSNAPQRVLDAMSRPILG-----H-----LHPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEAT   86 (393)
T ss_dssp             CCCCEECSSSCCCCCHHHHHHTTSCCCC-----T-----TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHH
T ss_pred             CCCeEEecCCCCCCCHHHHHHHHhhhcc-----C-----CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHH
Confidence            4556777777778899999888665321     1     12234677889999999999997533799999999999999


Q ss_pred             HHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc-CceEEEEcccccccccc
Q 017640          146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASI  224 (368)
Q Consensus       146 ~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~  224 (368)
                      +.++    +++||+|++++++|++..  +...++..|++++.++.++++.+|+++|++++++ ++++|++++++||||.+
T Consensus        87 ~~~~----~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~  160 (393)
T 2huf_A           87 LCNL----LEDGDVILIGHTGHWGDR--SADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVL  160 (393)
T ss_dssp             HHHH----CCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEE
T ss_pred             HHHH----hCCCCEEEEECCCcchHH--HHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhccCCcEEEEEccCCCcccc
Confidence            9998    789999999999998842  4455677899999999988888999999999988 89999999999999999


Q ss_pred             cCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCc-CCCCcceEEEEcccccccCCCcc---cCCcce
Q 017640          225 LPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKM-CGPTGIGFLFGKSDLLSAMPPFL---GGGEMI  300 (368)
Q Consensus       225 ~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~-~g~~G~G~l~~~~~li~~l~~~~---~g~~~~  300 (368)
                      +|+++|.++|++||+++|+|++|+.+..++++...++|++++|+||+ +|++|+|++++++++++.+++..   .++...
T Consensus       161 ~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~sK~l~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~  240 (393)
T 2huf_A          161 QGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYWD  240 (393)
T ss_dssp             CCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEECCSSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGC
T ss_pred             CCHHHHHHHHHHcCCEEEEEcccccCCCCcchhhcCccEEEECCCcccccCCCeEEEEECHHHHHHHhhcCCCCceEEEc
Confidence            99999999999999999999999988877777667899999999995 67889999999998887654331   110000


Q ss_pred             eecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          301 SDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      .....++. -.....++..++++..+++++..+++.+.+.+++.+.++..++++++.+.|.++ |++
T Consensus       241 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  305 (393)
T 2huf_A          241 MSLVGDYW-GCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDA-GFE  305 (393)
T ss_dssp             HHHHHHHT-TCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             hHHHHhhh-ccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-CCe
Confidence            00000000 001224667789999999999999999887789999999999999999999886 654

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=100.00  E-value=2e-34  Score=269.54  Aligned_cols=279  Identities=15%  Similarity=0.079  Sum_probs=230.5

Q ss_pred             CeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCC--cchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEE-eCCHHHHHH
Q 017640           67 KLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRG--IHFLSAKATDEYELARKKVAAFINASDSGEIVF-TKNATEAIN  143 (368)
Q Consensus        67 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~-t~g~t~a~~  143 (368)
                      +.--||.++.+++|++|++++.+.+..++.++...  .+..+..+.+.++++|+.+++++|++++++|+| |.|+|++++
T Consensus        12 ~~~~~n~at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n   91 (377)
T 3e77_A           12 DLGTENLYFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFS   91 (377)
T ss_dssp             ---CCCEECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHH
T ss_pred             CcccccccccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHH
Confidence            44568888899999999999999998777665421  144566788999999999999999976558999 589999999


Q ss_pred             HHHHHccCCCCC--CCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEccccccc
Q 017640          144 LVAYSWGLSNLK--SGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNML  221 (368)
Q Consensus       144 ~~~~~~~~~~~~--~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~t  221 (368)
                      +++.++    +.  +||++++...++++.  .+...+++.|..++.++.++++.++++.++.++++++++|++++..|.|
T Consensus        92 ~a~~~l----~~~~~Gd~v~~~~~g~~~~--~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~i~~~t~lV~~~h~et~t  165 (377)
T 3e77_A           92 AVPLNL----IGLKAGRCADYVVTGAWSA--KAAEEAKKFGTINIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVH  165 (377)
T ss_dssp             HHHHHH----GGGSTTCEEEECCCSHHHH--HHHHHHTTTSEEEECSCCCSSSCSCCCGGGCCCCTTCSCEEEESEETTT
T ss_pred             HHHHhc----cCCCCCCeEEEEECCHHHH--HHHHHHHHhCCceEEeccCCCcCCCCChHHhccCCCccEEEEeCccCch
Confidence            999998    44  489999888888774  4677788889888888887666678888888888899999999999999


Q ss_pred             ccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCccee
Q 017640          222 ASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMIS  301 (368)
Q Consensus       222 G~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~  301 (368)
                      |.+.|+     +|+++|+++++|++|++|..++|+++++  ++++|.||++||+|+|++++++++++.++|...+.    
T Consensus       166 G~~~pi-----i~~~~~~~~~vD~~q~~g~~~id~~~~~--~~~~s~~K~~gp~G~g~l~~~~~~l~~~~~~~p~~----  234 (377)
T 3e77_A          166 GVEFDF-----IPDVKGAVLVCDMSSNFLSKPVDVSKFG--VIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSV----  234 (377)
T ss_dssp             TEECSS-----CCCCTTCCEEEECTTTTTSSCCCGGGCS--EEEEEGGGTTSCTTCEEEEEETTSCSCCCTTSCGG----
T ss_pred             heEchh-----hhccCCCEEEEEcccccCCCCCchhhcC--EEEEecccccCCCccEEEEEcHHHHhhccCCCCch----
Confidence            999998     4788999999999999999999998866  58899999999999999999999998887654321    


Q ss_pred             ecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          302 DVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~-g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                         .++....  ......||||+..++++..+++++.+. |++++++|..++++++++.|.+++|++
T Consensus       235 ---~~~~~~~--~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~  296 (377)
T 3e77_A          235 ---LEYKVQA--GNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFY  296 (377)
T ss_dssp             ---GCHHHHH--TTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSE
T ss_pred             ---hhHHHHh--hcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCce
Confidence               1110000  112346899999999999999999999 799999999999999999999987753

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=100.00  E-value=2.7e-34  Score=270.03  Aligned_cols=273  Identities=15%  Similarity=0.084  Sum_probs=210.5

Q ss_pred             eEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCC--cchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEE-eCCHHHHHHH
Q 017640           68 LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRG--IHFLSAKATDEYELARKKVAAFINASDSGEIVF-TKNATEAINL  144 (368)
Q Consensus        68 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~-t~g~t~a~~~  144 (368)
                      .+||++++++++|+.|++++.+++..++.++...  .+..+..+.+.++++|+.+++++|++++++|+| |+|+|+++++
T Consensus        27 ~~yl~~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~  106 (386)
T 3qm2_A           27 QVFNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAG  106 (386)
T ss_dssp             CCEECCSSSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHH
T ss_pred             cCccccCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHH
Confidence            3799999999999999999999888776665421  233455667889999999999999975457988 6899999999


Q ss_pred             HHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC--CCCC-CCHHHHHHhcccCceEEEEccccccc
Q 017640          145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDES-PDLDKLKEMLSRKTKLVVIHHISNML  221 (368)
Q Consensus       145 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~--~~~~-~d~~~l~~~l~~~~~~v~~~~~~n~t  221 (368)
                      ++.++    +++||++++...++.+.  .|...+++.| ++..++.+  ++|. +++++++.++++++++|++++..|.|
T Consensus       107 ai~~l----~~~gd~v~~~~~~~~~~--~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~~t~lV~~~h~et~t  179 (386)
T 3qm2_A          107 VPLNL----LGDKTTADYVDAGYWAA--SAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLSDNAAYLHYCPNETID  179 (386)
T ss_dssp             HHHHH----CTTCCEEEEEESSHHHH--HHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCCTTCSCEEECSEETTT
T ss_pred             HHHhc----cCCCCeEEEEeCCHHHH--HHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcCCCCcEEEEECCcCCc
Confidence            99998    78999988776666664  4667778888 99999987  5664 78888999999999999999999999


Q ss_pred             ccc-cCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCcce
Q 017640          222 ASI-LPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMI  300 (368)
Q Consensus       222 G~~-~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~  300 (368)
                      |.+ .|+++|.     +|+++++|++|++|..++|+++++  ++++|.||++||+|+|++++++++++.+.|.....   
T Consensus       180 G~~i~pi~~i~-----~g~~~~vDa~qs~g~~pidv~~~~--~~~~s~hK~lGP~G~g~l~v~~~~~~~~~~~~p~~---  249 (386)
T 3qm2_A          180 GIAIDETPDFG-----PEVVVTADFSSTILSAPLDVSRYG--VIYAGAQKNIGPAGLTLVIVREDLLGKAHESCPSI---  249 (386)
T ss_dssp             TEECCCCCCCC-----TTCCEEEECTTTTTSSCCCGGGCS--EEEEETTTTTCCTTEEEEEEEGGGCSCCCTTSCGG---
T ss_pred             CEecCchhhhc-----CCCEEEEEcccccCCCCCCccccC--EEEEecccccCCCccEEEEECHHHHhhhcccCCcH---
Confidence            996 8899885     899999999999999999998865  67799999999999999999999998887654311   


Q ss_pred             eecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHhh
Q 017640          301 SDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~-g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                          .++...  .+.....||+|+..++++..+++++.+. |++++.++..++++++++.|.++
T Consensus       250 ----~~~~~~--~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~  307 (386)
T 3qm2_A          250 ----LDYTVL--NDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNS  307 (386)
T ss_dssp             ----GCHHHH--HHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ----HHHHHH--hhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC
Confidence                000000  0122335799999999999999999999 89999999999999999999876

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=100.00  E-value=4.5e-32  Score=257.97  Aligned_cols=282  Identities=14%  Similarity=0.115  Sum_probs=227.9

Q ss_pred             EEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHH
Q 017640           69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS  148 (368)
Q Consensus        69 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~  148 (368)
                      .++...++..+++.+.+++.+...          ....+...+..+++++++++++|.+.++.+++++|+++|+..++.+
T Consensus        14 ~~~~~pgp~~~~~~v~~a~~~~~~----------~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~   83 (411)
T 3nnk_A           14 RLLMGPGPINADPRVLRAMSSQLI----------GQYDPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVS   83 (411)
T ss_dssp             CEEESSSCCCCCHHHHHHHTSCCC----------CTTCHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHH
T ss_pred             ceeecCCCCCCCHHHHHHhhcccc----------ccccHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHH
Confidence            477777777889999888764321          1122344577889999999999998653488999999999999999


Q ss_pred             ccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc-CceEEEEcccccccccccCH
Q 017640          149 WGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASILPI  227 (368)
Q Consensus       149 ~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~l  227 (368)
                      +    +++||+|++.+++|++..  +...++..|++++.++.+.++.+|+++|++++++ ++++|++++++||||.+.|+
T Consensus        84 ~----~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l  157 (411)
T 3nnk_A           84 A----IRPGDKVLVPVFGRFGHL--LCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPL  157 (411)
T ss_dssp             H----CCTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCC
T ss_pred             h----cCCCCEEEEecCCchHHH--HHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceeccH
Confidence            8    899999999999887743  4566677899999999988899999999999986 89999999999999999999


Q ss_pred             HHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCc-CCCCcceEEEEcccccccCCCcc------cCCcce
Q 017640          228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKM-CGPTGIGFLFGKSDLLSAMPPFL------GGGEMI  300 (368)
Q Consensus       228 ~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~-~g~~G~G~l~~~~~li~~l~~~~------~g~~~~  300 (368)
                      ++|.++|++||+++|+|++|+.+..+++....++|++++|+||+ +|+.|+|++++++++++.+.+..      .|++..
T Consensus       158 ~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~  237 (411)
T 3nnk_A          158 AELGEICRRYDALFYTDATASLGGNPLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHR  237 (411)
T ss_dssp             TTHHHHHHHHTCEEEEECTTTBTTBCCCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTCC
T ss_pred             HHHHHHHHHcCCEEEEECCcccCCcccchhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhhcccccccccccccc
Confidence            99999999999999999999998888888878899999999994 78889999999998876554322      222211


Q ss_pred             ee----cccCCCCCC-----CCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          301 SD----VFLDHSTFA-----DPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       301 ~~----~~~~~~~~~-----~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      ..    ....+....     ....++..+|++...++++..+++.+.+.|++.+.++..++.+++.+.|.+. |++
T Consensus       238 gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~  312 (411)
T 3nnk_A          238 DGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAM-GLE  312 (411)
T ss_dssp             CCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             cccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCE
Confidence            00    000000000     0134667889999999999999999998899999999999999999999886 543

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=100.00  E-value=1.4e-32  Score=257.94  Aligned_cols=271  Identities=17%  Similarity=0.160  Sum_probs=212.4

Q ss_pred             CCeEEeccC-CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHH-HHHHcCCCCCCcEEEeCCHHHHHH
Q 017640           66 KKLVYLDNA-ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKK-VAAFINASDSGEIVFTKNATEAIN  143 (368)
Q Consensus        66 ~~~i~l~~~-~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-la~~~~~~~~~~v~~t~g~t~a~~  143 (368)
                      ++++|||.+ ..+++++.+.+++.+.+.......+...+..++...+...++++. +++++|.+   +|++|+|+|+|+.
T Consensus         7 ~~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~---~v~~~~g~t~a~~   83 (371)
T 2e7j_A            7 KDFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD---VARVTNGAREAKF   83 (371)
T ss_dssp             -CCEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS---EEEEESSHHHHHH
T ss_pred             CCcEEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC---EEEEeCChHHHHH
Confidence            578999994 466889999999998876532111100122233345667789999 99999986   8999999999999


Q ss_pred             HHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe--CCCCCCCCHHHHHHhcc-----cCceEEEEcc
Q 017640          144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN--LNDDESPDLDKLKEMLS-----RKTKLVVIHH  216 (368)
Q Consensus       144 ~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~--~~~~~~~d~~~l~~~l~-----~~~~~v~~~~  216 (368)
                      .++.++    +++||+|++++++|++....    ++..|++++.++  .++++.+|+++|+++++     +++++|++++
T Consensus        84 ~~~~~~----~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~  155 (371)
T 2e7j_A           84 AVMHSL----AKKDAWVVMDENCHYSSYVA----AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITY  155 (371)
T ss_dssp             HHHHHH----CCTTCEEEEETTCCHHHHHH----HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEES
T ss_pred             HHHHHH----hCCCCEEEEccCcchHHHHH----HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEEC
Confidence            999998    78999999999999986654    456799999999  77788999999999998     6899999999


Q ss_pred             cccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcC-CCCcceEEEEccccccc-CCCcc
Q 017640          217 ISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMC-GPTGIGFLFGKSDLLSA-MPPFL  294 (368)
Q Consensus       217 ~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~-g~~G~G~l~~~~~li~~-l~~~~  294 (368)
                      ++||||.++|+++|.++|++||+++|+|++|+.+..++++...++|++++|+||++ ++.++|++++++++++. +++..
T Consensus       156 ~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~~~G~~~~~~~~~~~~~~~~~  235 (371)
T 2e7j_A          156 PDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSE  235 (371)
T ss_dssp             SCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCS
T ss_pred             CCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCCCChhhcCCCEEEecCCcCCCCCCCcEEEEEechhhhhhccccc
Confidence            99999999999999999999999999999999887766655567899999999955 45569999999998887 77654


Q ss_pred             cCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH--HHHHHHHHHHHHhhcCC
Q 017640          295 GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYE--VKWIICSIIVIQERHNT  366 (368)
Q Consensus       295 ~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~--~~l~~~l~~~l~~~~g~  366 (368)
                      .++..              ...++.++++..+++++..+++++..    .+.++.  .++++++.+.|.+. |+
T Consensus       236 ~~~~~--------------~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~-~~  290 (371)
T 2e7j_A          236 KYKNK--------------EVELLGCTARGATIITLMASFPHVRE----RIKRWDEEVEKARRFAAEMEKL-GI  290 (371)
T ss_dssp             SCTTS--------------BGGGTTCCCCSHHHHHHHHHHHHHHH----HGGGHHHHHHHHHHHHHHHHHT-TC
T ss_pred             cCccc--------------ccccccCCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHc-Cc
Confidence            42211              01244678999999888889988765    567777  88889999988876 54

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=100.00  E-value=4.7e-32  Score=258.26  Aligned_cols=276  Identities=14%  Similarity=0.155  Sum_probs=221.1

Q ss_pred             CCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcE-EEeCCHHHHHHHHHHHccCC
Q 017640           74 AATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEI-VFTKNATEAINLVAYSWGLS  152 (368)
Q Consensus        74 ~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v-~~t~g~t~a~~~~~~~~~~~  152 (368)
                      ..+...++.+.+++.+..          .........+..+++++.+++++|.+++ .+ ++++|+|+++..++.++   
T Consensus        17 p~p~~~~~~v~~a~~~~~----------~~~~~~~~~~~~~~l~~~la~~~g~~~~-~~~~~~~s~t~al~~~~~~l---   82 (416)
T 3isl_A           17 PGPVEVDPRVLRVMSTPV----------VGQFDPAFTGIMNETMEMLRELFQTKNR-WAYPIDGTSRAGIEAVLASV---   82 (416)
T ss_dssp             SSSCCCCHHHHHHTTSCC----------CCTTSHHHHHHHHHHHHHHHHHTTCCCS-EEEEEESCHHHHHHHHHHHH---
T ss_pred             CCCcCcCHHHHHHhcccC----------CCCccHHHHHHHHHHHHHHHHHhCCCCC-cEEEecCcHHHHHHHHHHHh---
Confidence            344466777777664411          1122234577888999999999999865 55 48899999999999998   


Q ss_pred             CCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcc-cCceEEEEcccccccccccCHHHHH
Q 017640          153 NLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS-RKTKLVVIHHISNMLASILPIEEIV  231 (368)
Q Consensus       153 ~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~-~~~~~v~~~~~~n~tG~~~~l~~i~  231 (368)
                       +++||+|++.+++|++..  +...++..|++++.++.++++.+|+++|+++++ +++++|++++++||||.+.|+++|.
T Consensus        83 -~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~  159 (416)
T 3isl_A           83 -IEPEDDVLIPIYGRFGYL--LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIG  159 (416)
T ss_dssp             -CCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHH
T ss_pred             -cCCCCEEEEecCCcccHH--HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHH
Confidence             899999999999888743  566677889999999999889999999999998 5899999999999999999999999


Q ss_pred             HHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcC-cCCCCcceEEEEcccccccCCCcc---cCCcce-------
Q 017640          232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFL---GGGEMI-------  300 (368)
Q Consensus       232 ~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~G~G~l~~~~~li~~l~~~~---~g~~~~-------  300 (368)
                      ++|++||+++|+|++|+.+..+++....++|++++|+|| ++|+.|+|++++++++++.+.+..   .||..+       
T Consensus       160 ~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~  239 (416)
T 3isl_A          160 EACRTEDALFIVDAVATIGGCEVKVDEWKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALS  239 (416)
T ss_dssp             HHHHHTTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHTC-----------------
T ss_pred             HHHHHcCCEEEEECCccccCCCcchhhcCCCEEEecCccccCCCCCeEEEEECHHHHHHhhccccccccccccccchhcc
Confidence            999999999999999999988888887889999999999 588999999999999887766432   333221       


Q ss_pred             -----eecccCCCCCC--CCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          301 -----SDVFLDHSTFA--DPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       301 -----~~~~~~~~~~~--~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                           .....+...+.  ....++..||++...++++.++++.+...|++.+.++..++++++.+.|.+. |++
T Consensus       240 gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~  312 (416)
T 3isl_A          240 GNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAM-GLR  312 (416)
T ss_dssp             -CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             CCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCE
Confidence                 11111100000  0235677889999999999999999999899999999999999999999985 654

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=100.00  E-value=1e-31  Score=250.19  Aligned_cols=268  Identities=16%  Similarity=0.171  Sum_probs=217.8

Q ss_pred             EeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHc
Q 017640           70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSW  149 (368)
Q Consensus        70 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~  149 (368)
                      |+.++++.++++.+++++.+.+..          ..++...+...++|+++++++|.++ +++++|+|+++|+..++.++
T Consensus         3 ~l~~~~p~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~l~~~la~~~g~~~-~~i~~~~g~t~a~~~~~~~~   71 (352)
T 1iug_A            3 WLLTPGPVRLHPKALEALARPQLH----------HRTEAAREVFLKARGLLREAFRTEG-EVLILTGSGTLAMEALVKNL   71 (352)
T ss_dssp             EECSSSSCCCCHHHHHHHHSCCCC----------TTSHHHHHHHHHHHHHHHHHHTCSS-EEEEEESCHHHHHHHHHHHH
T ss_pred             ccccCCCCCCCHHHHHHhccCCCC----------ccCHHHHHHHHHHHHHHHHHhCCCC-ceEEEcCchHHHHHHHHHhc
Confidence            667777788899999998766421          1233456778899999999999975 48999999999999999998


Q ss_pred             cCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHH
Q 017640          150 GLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEE  229 (368)
Q Consensus       150 ~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~  229 (368)
                          +++||+|++.+++|++..  +...++..|++++.++.++++.+|+++|++   +++++|++++++||||.++|+++
T Consensus        72 ----~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~---~~~~~v~~~~~~nptG~~~~l~~  142 (352)
T 1iug_A           72 ----FAPGERVLVPVYGKFSER--FYEIALEAGLVVERLDYPYGDTPRPEDVAK---EGYAGLLLVHSETSTGALADLPA  142 (352)
T ss_dssp             ----CCTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCTTTSCC---SSCSEEEEESEETTTTEECCHHH
T ss_pred             ----cCCCCeEEEEeCCchhHH--HHHHHHHcCCceEEEeCCCCCCCCHHHHhc---cCCcEEEEEEecCCcceecCHHH
Confidence                789999999999999865  445566779999999998888889988877   67899999999999999999999


Q ss_pred             HHHHHHhc--CCEEEEecCCcCCcccccCCCCCccEEEecCcC-cCCCCcceEEEEcccccccCCCcccCCcceeecccC
Q 017640          230 IVHWSHDV--GAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLD  306 (368)
Q Consensus       230 i~~l~~~~--g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~  306 (368)
                      |.++|++|  |+++|+|++|+.+..++++...+.|++++|+|| ++|+.|+|++++++++++.+++  .++..  ... .
T Consensus       143 i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~--~~~~~--~~~-~  217 (352)
T 1iug_A          143 LARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKP--RGYYL--DLA-R  217 (352)
T ss_dssp             HHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCC--CSSTT--CHH-H
T ss_pred             HHHHHHhhCCCCEEEEECCccccCcceeccccCeeEEEecCcccccCCCceeEEEECHHHHHHhhC--CCcee--eHH-H
Confidence            99999999  999999999998877777666679999999999 7788899999999998877665  11110  000 0


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          307 HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       307 ~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      .  +.....++..++++...+.++..+++.+.+. ++.++++..++++++.+.|+++ |+
T Consensus       218 ~--~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~-g~  273 (352)
T 1iug_A          218 E--LKAQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEHLALKAWQNALLYGVGEEG-GL  273 (352)
T ss_dssp             H--HHHHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             H--HhhcccCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHC-CC
Confidence            0  0000123446799999999999999988776 8899999999999999999886 54

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=100.00  E-value=1.9e-31  Score=252.61  Aligned_cols=280  Identities=13%  Similarity=0.135  Sum_probs=221.3

Q ss_pred             CCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHH
Q 017640           66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV  145 (368)
Q Consensus        66 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~  145 (368)
                      ++.+++.+.+..++++.+.+++.+.+..          ..+........++|+.+++++|.+++++|++|+|+++++..+
T Consensus        16 ~~~~~~~~~~p~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~   85 (396)
T 2ch1_A           16 IPEKIMMGPGPSNCSKRVLTAMTNTVLS----------NFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAM   85 (396)
T ss_dssp             CCCCBCCSSSSCCCCHHHHHHTTSCCCC----------TTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHH
T ss_pred             CCcceeecCCCCCCCHHHHHHhcccccc----------CCChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHH
Confidence            3344666666667888888887654310          112233456789999999999997533799999999999999


Q ss_pred             HHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc-CceEEEEcccccccccc
Q 017640          146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASI  224 (368)
Q Consensus       146 ~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~  224 (368)
                      +.++    +++||+|++.+++|++..  +...++..|++++.++.++++.+|+++|++++++ ++++|++++++||||.+
T Consensus        86 ~~~~----~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~  159 (396)
T 2ch1_A           86 LSNL----LEEGDRVLIAVNGIWAER--AVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLL  159 (396)
T ss_dssp             HHHH----CCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEE
T ss_pred             HHHh----cCCCCeEEEEcCCcccHH--HHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCcee
Confidence            9998    789999999999998842  3445677899999999988888999999999987 89999999999999999


Q ss_pred             cCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcC-cCCCCcceEEEEcccccccCCCc-------ccC
Q 017640          225 LPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPF-------LGG  296 (368)
Q Consensus       225 ~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~G~G~l~~~~~li~~l~~~-------~~g  296 (368)
                      +|+++|.++|++||+++|+|++|+++..++++..+++|+++.|+|| ++++.|+|++++++++++.+...       ..+
T Consensus       160 ~~~~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~  239 (396)
T 2ch1_A          160 QPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWD  239 (396)
T ss_dssp             CCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGC
T ss_pred             cCHHHHHHHHHHcCCEEEEEccccccCCccchhhcCcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCcccceEec
Confidence            9999999999999999999999998887777777788999999999 56688899999999887765432       111


Q ss_pred             CcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          297 GEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      .......   +.  .....++..+|++...++++..+++.+.+.+++.+.++..++++++.+.|.++ |++
T Consensus       240 ~~~~~~~---~~--~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  304 (396)
T 2ch1_A          240 LLLLGNY---WG--CYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM-GLD  304 (396)
T ss_dssp             HHHHHHH---TT--CSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCC
T ss_pred             hHHHHHh---hh--hhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCe
Confidence            0000000   00  01123556789999999999999998877789999999999999999999887 654

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=100.00  E-value=1.5e-31  Score=252.69  Aligned_cols=281  Identities=15%  Similarity=0.140  Sum_probs=226.3

Q ss_pred             EeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHc
Q 017640           70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSW  149 (368)
Q Consensus        70 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~  149 (368)
                      ++...++..+++.+.+++.+...        .  .......+...+++++++++++.+.+++|++|+|+++++..++.++
T Consensus        25 ~~~~p~p~~~~~~v~~a~~~~~~--------~--~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~   94 (393)
T 3kgw_A           25 LLLGPGPSNLAPRVLAAGSLRMI--------G--HMQKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNL   94 (393)
T ss_dssp             EECSSSCCCCCHHHHHHTTCCCC--------C--TTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHH
T ss_pred             eeccCCCCCCCHHHHHHhccccc--------C--cccHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhc
Confidence            66666677889999888765321        0  1123345777899999999999986546999999999999999998


Q ss_pred             cCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc-CceEEEEcccccccccccCHH
Q 017640          150 GLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASILPIE  228 (368)
Q Consensus       150 ~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~l~  228 (368)
                          +++||+|++..+.|++.  .+...++..|++++.++.++++.+|+++|++++++ ++++|++++++||||.++|++
T Consensus        95 ----~~~gd~vl~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~  168 (393)
T 3kgw_A           95 ----LEPGDSFLTGTNGIWGM--RAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPLD  168 (393)
T ss_dssp             ----CCTTCEEEEEESSHHHH--HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCT
T ss_pred             ----CCCCCEEEEEeCCchhH--HHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCcEEEEeccCCcchhhccHH
Confidence                89999999998877643  24566778899999999988888999999999988 899999999999999999999


Q ss_pred             HHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcC-cCCCCcceEEEEcccccccCCCcccCCcceeecccCC
Q 017640          229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDH  307 (368)
Q Consensus       229 ~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~  307 (368)
                      +|.++|++||+++|+|++|+.+..+++....+.|++++|+|| ++|+.|+|++++++++++.+.+...++..........
T Consensus       169 ~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (393)
T 3kgw_A          169 GFGELCHRYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYTDITYL  248 (393)
T ss_dssp             THHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHH
T ss_pred             HHHHHHHHcCCEEEEECCccccCcccchhhcCCCEEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCceeecHHHH
Confidence            999999999999999999998888777777789999999999 5578889999999998887765443322110000000


Q ss_pred             -CCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          308 -STF-ADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       308 -~~~-~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                       ..+ .....++..++++...++++..+++.+.+.+++.+.++..++.+++.+.|+++ |++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  309 (393)
T 3kgw_A          249 AKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEM-GLK  309 (393)
T ss_dssp             HHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             HHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCe
Confidence             000 01223667889999999999999999998899999999999999999999987 543

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=100.00  E-value=2.3e-31  Score=250.57  Aligned_cols=273  Identities=16%  Similarity=0.202  Sum_probs=220.3

Q ss_pred             ccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCC-CcEEEeCCHHHHHHHHHHHcc
Q 017640           72 DNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDS-GEIVFTKNATEAINLVAYSWG  150 (368)
Q Consensus        72 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~-~~v~~t~g~t~a~~~~~~~~~  150 (368)
                      ...++.++++.+.+++.+.+..          ..+....+..+++++++++++|.+.+ ++|++|+|+++++. ++.++ 
T Consensus         6 ~~~gp~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~-   73 (384)
T 3zrp_A            6 LHVGPTTIKEDVLVAGLENNVG----------FTSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSL-   73 (384)
T ss_dssp             CCSSCSCCCHHHHHHTTCCSCC----------TTSHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGG-
T ss_pred             ccCCCCCCCHHHHHHhhccccc----------cccHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhh-
Confidence            3445567888888887655321          12334577888999999999999862 48999999999999 88877 


Q ss_pred             CCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc-CceEEEEcccccccccccCHHH
Q 017640          151 LSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASILPIEE  229 (368)
Q Consensus       151 ~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~l~~  229 (368)
                         +++||+|++.+++|++.  .+..+++..|++++.++.++++.+|+++|++++++ ++++|++++++||||.++|+++
T Consensus        74 ---~~~gd~vi~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~  148 (384)
T 3zrp_A           74 ---LKPNDKILVVSNGVFGD--RWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVKD  148 (384)
T ss_dssp             ---CCTTCEEEEECSSHHHH--HHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHHH
T ss_pred             ---cCCCCEEEEecCCcchH--HHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHHH
Confidence               89999999999988773  36666778899999999998899999999999988 8999999999999999999999


Q ss_pred             HHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcC-CCCcceEEEEcccccccC-CCcccCCcceeecccCC
Q 017640          230 IVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMC-GPTGIGFLFGKSDLLSAM-PPFLGGGEMISDVFLDH  307 (368)
Q Consensus       230 i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~-g~~G~G~l~~~~~li~~l-~~~~~g~~~~~~~~~~~  307 (368)
                      |.++|++||+++|+|++|+.+..+++....++|++++|+||++ |+.|+|++++++++++.+ ++.......     .+.
T Consensus       149 i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~-----~~~  223 (384)
T 3zrp_A          149 VINKIRKYVELIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYY-----LDL  223 (384)
T ss_dssp             HHHHHGGGEEEEEEECTTTTTTSCCCTTTTTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCCST-----TCH
T ss_pred             HHHHHHhcCCEEEEECcccccCccccccccCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCCCccc-----ccH
Confidence            9999999999999999999998887787778999999999965 688899999999988776 332111000     000


Q ss_pred             CCCCCCC------CCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          308 STFADPP------SRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       308 ~~~~~~~------~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      ..+....      ..+..|+++...++++..+++.+...+++.+.++..++.+++.+.|.++ |++
T Consensus       224 ~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  288 (384)
T 3zrp_A          224 RNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL-GLE  288 (384)
T ss_dssp             HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             HHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCe
Confidence            0000000      1222369999999999999999998899999999999999999999987 654

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=100.00  E-value=1.2e-31  Score=249.47  Aligned_cols=271  Identities=15%  Similarity=0.159  Sum_probs=216.1

Q ss_pred             eccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC-CCCcEEEeCCHHHHHHHHHHHc
Q 017640           71 LDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-DSGEIVFTKNATEAINLVAYSW  149 (368)
Q Consensus        71 l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~~v~~t~g~t~a~~~~~~~~  149 (368)
                      +.+.++.++++.+.+++.+.+..     +     .++...+...++|+++++++|.+ +++++++|+|+++|+..++.++
T Consensus         3 ~~~~gp~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~   72 (353)
T 2yrr_A            3 LLTPGPTPIPERVQKALLRPMRG-----H-----LDPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANL   72 (353)
T ss_dssp             ECSSSSCCCCHHHHGGGGSCCCC-----T-----TCHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTC
T ss_pred             cCCCCCCCCCHHHHHHHhccccc-----c-----cCHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHh
Confidence            34445567889999888765431     1     12344677889999999999986 3348999999999999999887


Q ss_pred             cCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc-CceEEEEcccccccccccCHH
Q 017640          150 GLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASILPIE  228 (368)
Q Consensus       150 ~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~l~  228 (368)
                          .+  |+|++++++|++.  .+...++..|++++.++.++++.+|+++|++++++ ++++|++++++||||.++|++
T Consensus        73 ----~~--d~vl~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~  144 (353)
T 2yrr_A           73 ----DR--GPVLVLVNGAFSQ--RVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVLNPAE  144 (353)
T ss_dssp             ----SC--CCEEEEECSHHHH--HHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHH
T ss_pred             ----cC--CcEEEEcCCCchH--HHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecCHH
Confidence                44  8899999999886  35666678899999999988888999999999988 899999999999999999999


Q ss_pred             HHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcC-cCCCCcceEEEEcccccccCCCcccCCcceeecccCC
Q 017640          229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDH  307 (368)
Q Consensus       229 ~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~  307 (368)
                      +|.++|++||+++|+|++|+.+..++++...+.|++++|+|| ++|++|+|++++++++++.++. ..++.......   
T Consensus       145 ~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~-~~~~~~~~~~~---  220 (353)
T 2yrr_A          145 AIGALAKEAGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTG-KRGWYLDLARV---  220 (353)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEECCTTSTTCCCSSCEEEEECHHHHHHCCC-CSCSTTCHHHH---
T ss_pred             HHHHHHHHcCCeEEEEcCcccccccccccccCceEEEecCcccccCCCceEEEEECHHHHHHhcc-CCCccccHHHH---
Confidence            999999999999999999998877666555678999999999 5678889999999998887763 11110000000   


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          308 STFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       308 ~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      ...  ....+..++++...+.++..+++.+.+.|++.+.++..++++++.+.|++. |+
T Consensus       221 ~~~--~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~  276 (353)
T 2yrr_A          221 AEH--WERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR-GF  276 (353)
T ss_dssp             HHH--HTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             hhh--hhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CC
Confidence            000  002334668999999999999999988889999999999999999999886 54

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=100.00  E-value=5.8e-32  Score=252.67  Aligned_cols=281  Identities=15%  Similarity=0.149  Sum_probs=221.6

Q ss_pred             EeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHc
Q 017640           70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSW  149 (368)
Q Consensus        70 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~  149 (368)
                      ++.+.++..+|+.+.+++.+.+....    .+.......+.+..+++++.+++++|.+.+++|++|+|+|+|+.+++.++
T Consensus         6 ~~~~p~p~~~~~~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l   81 (362)
T 3ffr_A            6 IYFTPGPSELYPTVRQHMITALDEKI----GVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNC   81 (362)
T ss_dssp             EEECSSSCCCCTTHHHHHHHHHHTTT----TTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHH
T ss_pred             eeccCCCcCCCHHHHHHHHHHhcCCc----cCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhc
Confidence            44555667788999988888776421    01122345567888999999999999975558999999999999999998


Q ss_pred             cCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHH
Q 017640          150 GLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEE  229 (368)
Q Consensus       150 ~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~  229 (368)
                          .++  .+++..+.|++.  .+...++..|++++.++.++++.+|+++|+  +++++++|++++++||||.++|+++
T Consensus        82 ----~~~--~~i~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~--~~~~~~~v~~~~~~nptG~~~~l~~  151 (362)
T 3ffr_A           82 ----VEK--KSFHCVNGSFSK--RFYEFAGELGREAYKEEAAFGKGFYPADIT--VPADAEIICLTHNETSSGVSMPVED  151 (362)
T ss_dssp             ----CSS--EEEEEECSHHHH--HHHHHHHHTTCEEEEEECCTTCCCCGGGCC--CCTTCCEEEEESEETTTTEECCHHH
T ss_pred             ----cCC--cEEEEcCcHHHH--HHHHHHHHhCCCeEEEecCCCCCCCHHHHh--ccCCccEEEEEcCCCCcceeCCHHH
Confidence                566  555555444442  345567788999999999888899999998  7789999999999999999999999


Q ss_pred             HHHHHHhc-CCEEEEecCCcCCcccccCCCCCccEEEecCcCcCC-CCcceEEEEcccccccCCCcccCCcceeecccCC
Q 017640          230 IVHWSHDV-GAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCG-PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDH  307 (368)
Q Consensus       230 i~~l~~~~-g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g-~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~  307 (368)
                      |.++|++| |+++|+|++|+.+..+++...  .|++++|+||+++ ++|+|++++++++++.+.+...||+...... +.
T Consensus       152 i~~la~~~p~~~li~D~a~~~~~~~~~~~~--~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~~~~gg~~~~~~~-~~  228 (362)
T 3ffr_A          152 INTFRDKNKDALIFVDAVSSLPYPKFDWTK--IDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRKSIGTYH-TI  228 (362)
T ss_dssp             HTTSGGGSTTSEEEEECTTTTTSSCCCTTS--CSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHHHHHTTCCCCSTT-SH
T ss_pred             HHHHHHhCCCCEEEEecccccCCcccChhH--CcEEEEecccccCCCCceEEEEECHHHHHHhhhccccCCCCcccc-cH
Confidence            99999999 999999999999887776654  8999999999887 8999999999999888876665554322111 10


Q ss_pred             CCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          308 STFAD-PPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       308 ~~~~~-~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      ..+.. .......++++...++++..+++++...|++.+.++..++++++.+.|.+++|++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  289 (362)
T 3ffr_A          229 PSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFS  289 (362)
T ss_dssp             HHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEE
T ss_pred             HHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCce
Confidence            00000 0112336799999999999999998888899999999999999999999887753

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.97  E-value=4.4e-31  Score=246.05  Aligned_cols=271  Identities=16%  Similarity=0.138  Sum_probs=215.0

Q ss_pred             EEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEE-eCCHHHHHHH
Q 017640           69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIH---FLSAKATDEYELARKKVAAFINASDSGEIVF-TKNATEAINL  144 (368)
Q Consensus        69 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~-t~g~t~a~~~  144 (368)
                      +|+-+++++++|+.|++++.+.+..++.++. +.+   ..+..+.+.++++|+.+++++|++++++|+| |+|+|+++++
T Consensus         6 ~~~f~pgpt~~~~~V~~a~~~~~~~~~~~~~-s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~   84 (361)
T 3m5u_A            6 KINFSAGPSTLPLEILEQAQKELCDYQGRGY-SIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAM   84 (361)
T ss_dssp             CEECCSSSCCCCHHHHHHHHHTSSSGGGSSS-CGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred             eEeecCCCCCCcHHHHHHHHHHHHhcccCCc-eeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHH
Confidence            5666777889999999999998887766653 332   3355678999999999999999975558888 9999999999


Q ss_pred             HHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCC--CCHHHHHHhcccCceEEEEcccccccc
Q 017640          145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDES--PDLDKLKEMLSRKTKLVVIHHISNMLA  222 (368)
Q Consensus       145 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~--~d~~~l~~~l~~~~~~v~~~~~~n~tG  222 (368)
                      ++..+    + +||++++....+.+.  .+...+++.|++++.++.++++.  ++++.  + |++++++|++++..|.||
T Consensus        85 ~~~~~----~-~~~~~~~i~~~~~~~--~~~~~a~~~G~~v~~~~~~~~g~~~~~~~~--~-l~~~t~lv~~~~~e~~tG  154 (361)
T 3m5u_A           85 IPMNL----A-LNGVCEYANTGVWTK--KAIKEAQILGVNVKTVASSEESNFDHIPRV--E-FSDNADYAYICSNNTIYG  154 (361)
T ss_dssp             HHHHH----C-CSSCEEEEECSHHHH--HHHHHHHHTTCCEEEEEECTTTTSCSCCCC--C-CCTTSSEEEEESEETTTT
T ss_pred             HHHhc----C-CCCeEEEEeCCHHHH--HHHHHHHHcCCceEEEecccCcCCCcCChh--h-cCCCCCEEEEeCCCCCcc
Confidence            99998    5 677653332233333  46666788899999999988774  56666  4 888999999999999999


Q ss_pred             cccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCcceee
Q 017640          223 SILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISD  302 (368)
Q Consensus       223 ~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~  302 (368)
                      .+.|.     +++ +|+++++|++|++|..++|+++  .|++++|.||++||+|+|++++++++++.+.|...+. .   
T Consensus       155 ~~~~~-----i~~-~~~~~~vD~~q~~g~~~id~~~--~d~~~~s~~K~~gp~G~g~l~~~~~~~~~~~~~~~p~-~---  222 (361)
T 3m5u_A          155 TQYQN-----YPK-TKTPLIVDASSDFFSRKVDFSN--IALFYGGVQKNAGISGLSCIFIRKDMLERSKNKQIPS-M---  222 (361)
T ss_dssp             EECSS-----CCC-CSSCEEEECGGGTTSSCCCCTT--EEEEEEETTTTSSCTTCEEEEEEHHHHHHHHTCCCCG-G---
T ss_pred             eeCCc-----ccc-cCCEEEEEcccccCCCCCCccc--CCEEEEechhccCCCccEEEEEcHHHHhhhcCCCCCc-e---
Confidence            99772     344 4999999999999999999985  7999999999999999999999999987766521110 0   


Q ss_pred             cccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          303 VFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       303 ~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~-g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                        .++....  ......||||+..++++..+++++.+. |++++.+|..++.+++++.|.++.|+
T Consensus       223 --~~~~~~~--~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~  283 (361)
T 3m5u_A          223 --LNYLTHA--ENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGF  283 (361)
T ss_dssp             --GCHHHHH--HTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTS
T ss_pred             --eehHHHh--hcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence              0000000  112334799999999999999999999 89999999999999999999987654

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.97  E-value=5.6e-30  Score=240.77  Aligned_cols=272  Identities=11%  Similarity=0.057  Sum_probs=213.4

Q ss_pred             ccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEE-EeCCHHHHHHHHHHHcc
Q 017640           72 DNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIV-FTKNATEAINLVAYSWG  150 (368)
Q Consensus        72 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~-~t~g~t~a~~~~~~~~~  150 (368)
                      -..++.++|+.+.+++.+.+.     .+     ......+..+++++.+++++|.+.+.+++ +|+|+++++..++.++ 
T Consensus        23 ~~pgp~~~~~~v~~a~~~~~~-----~~-----~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~-   91 (376)
T 3f0h_A           23 FTVGPVMSSEEVRAIGAEQVP-----YF-----RTTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNC-   91 (376)
T ss_dssp             CSSSSCCCCHHHHHHHTSCCC-----CC-----SSHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHH-
T ss_pred             ecCCCCCCcHHHHHHhcCCCC-----CC-----CCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhc-
Confidence            334456788899888865431     11     12344577889999999999997543554 5899999999999998 


Q ss_pred             CCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHH
Q 017640          151 LSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEI  230 (368)
Q Consensus       151 ~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i  230 (368)
                         +++||+|++.++.|++..  +...++..|++++.++.+.++.+|+++|++++++++++|++++++||||.++|+++|
T Consensus        92 ---~~~gd~vi~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i  166 (376)
T 3f0h_A           92 ---FTKKDKVLVIDGGSFGHR--FVQLCEIHEIPYVALKLEHGKKLTKEKLYEYDNQNFTGLLVNVDETSTAVLYDTMMI  166 (376)
T ss_dssp             ---CCTTCCEEEEESSHHHHH--HHHHHHHTTCCEEEEECCTTCCCCHHHHHTTTTSCCCEEEEESEETTTTEECCHHHH
T ss_pred             ---cCCCCeEEEEeCChhhHH--HHHHHHHcCCceEEEeCCCCCCCCHHHHHHhhccCceEEEEecccCCcceecCHHHH
Confidence               789999999998777743  345567789999999998888999999999998899999999999999999999999


Q ss_pred             HHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCC-CCcceEEEEcccccccCCCcccCCcceeecccCCCC
Q 017640          231 VHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCG-PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHST  309 (368)
Q Consensus       231 ~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g-~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~  309 (368)
                      .++|++||+++|+|++|+.+..+++....++|++++|+||+++ ++|+|++++++++++.+.+...++..... .. .  
T Consensus       167 ~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~-~~-~--  242 (376)
T 3f0h_A          167 GEFCKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDL-KD-A--  242 (376)
T ss_dssp             HHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCSTTCH-HH-H--
T ss_pred             HHHHHHcCCEEEEEcCccccCccccccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCceeecH-HH-H--
Confidence            9999999999999999998887777666779999999999877 88999999999988776543221110000 00 0  


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHhh
Q 017640          310 FADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       310 ~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~-g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      ...........+++...++++.++++.+.+. +++.+.++..++++++.+.|.++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  297 (376)
T 3f0h_A          243 LKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDL  297 (376)
T ss_dssp             HHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             HhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc
Confidence            0000011223478888889999999999887 68999999999999999998765

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.97  E-value=3.7e-29  Score=233.82  Aligned_cols=277  Identities=16%  Similarity=0.201  Sum_probs=210.5

Q ss_pred             eEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHH-HHHHHHHHHHHHHcCCCC-CCcEEEeCCHHHHHHHH
Q 017640           68 LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKAT-DEYELARKKVAAFINASD-SGEIVFTKNATEAINLV  145 (368)
Q Consensus        68 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~~la~~~~~~~-~~~v~~t~g~t~a~~~~  145 (368)
                      ++.++.+ +...++.+.+++.+.+    .  +    . ..... +...++|+++++++|.+. .+++++|+|+++|+..+
T Consensus         5 ~~~~~~g-p~~~~~~v~~a~~~~~----~--~----~-~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~   72 (366)
T 1m32_A            5 YLLLTPG-PLTTSRTVKEAMLFDS----C--T----W-DDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAV   72 (366)
T ss_dssp             CEECSSS-SCCCCHHHHHTTCCCC----C--T----T-SHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHH
T ss_pred             cccccCC-CcCCCHHHHHHHhhhh----c--C----C-CHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHH
Confidence            3455555 4468889998886631    0  1    1 11123 567789999999999431 13799999999999999


Q ss_pred             HHHccCCCCCCCCEEEEcC-CCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc--CceEEEEcccccccc
Q 017640          146 AYSWGLSNLKSGDEVILTV-AEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR--KTKLVVIHHISNMLA  222 (368)
Q Consensus       146 ~~~~~~~~~~~gd~vl~~~-~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~--~~~~v~~~~~~n~tG  222 (368)
                      +.++    .++||+|++.+ +.|++.   +...++..|++++.++.++++.+|+++|++++++  ++++|++++++||||
T Consensus        73 ~~~~----~~~gd~vi~~~~~~~~~~---~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG  145 (366)
T 1m32_A           73 LGSA----LGPQDKVLIVSNGAYGAR---MVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTG  145 (366)
T ss_dssp             HHHS----CCTTCCEEEEESSHHHHH---HHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTT
T ss_pred             HHHh----cCCCCeEEEEeCCCccHH---HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCeEEEEEecccCCcc
Confidence            9998    68899887775 544442   3445566799999999988888999999999976  478999999999999


Q ss_pred             cccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCc-CCCCcceEEEEcccccccCCCcccCCccee
Q 017640          223 SILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKM-CGPTGIGFLFGKSDLLSAMPPFLGGGEMIS  301 (368)
Q Consensus       223 ~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~-~g~~G~G~l~~~~~li~~l~~~~~g~~~~~  301 (368)
                      .++|+++|.++|++||+++|+|++|+.+..++++...++|++++|+||+ +|+.|+|++++++++++.+.+...+.... 
T Consensus       146 ~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~-  224 (366)
T 1m32_A          146 MLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLD-  224 (366)
T ss_dssp             EECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTC-
T ss_pred             eecCHHHHHHHHHHcCCEEEEECCccccCcCccccccCccEEEecCcccccCCCceEEEEECHHHHHhhcCCCCCcccc-
Confidence            9999999999999999999999999988877777666799999999995 57888999999999888776532111000 


Q ss_pred             ecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          302 DVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG-MQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g-~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                       ....+..+ ........++++...++++..+++.+.+.| ++.+.++.+++.+++.+.|.+. |++
T Consensus       225 -~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-~~~  288 (366)
T 1m32_A          225 -LYAQWRCM-EDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL-GFN  288 (366)
T ss_dssp             -HHHHHHHH-HHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             -HHHHHhhh-cccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC-CCe
Confidence             00000000 000011235899999999999999988877 8999999999999999999876 543

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.97  E-value=2.3e-29  Score=237.13  Aligned_cols=281  Identities=17%  Similarity=0.127  Sum_probs=209.7

Q ss_pred             EeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCC---CCcEEEeCCHHHHHHHHH
Q 017640           70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD---SGEIVFTKNATEAINLVA  146 (368)
Q Consensus        70 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~---~~~v~~t~g~t~a~~~~~  146 (368)
                      ++...++..+++.+.+++.+....     +     ......+...++++.++++++...   +++|++|+|+|+++..++
T Consensus         7 ~~~~p~p~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~   76 (385)
T 2bkw_A            7 TLLIPGPIILSGAVQKALDVPSLG-----H-----TSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFA   76 (385)
T ss_dssp             EECSSSSCCCCHHHHHTTSCCCCC-----T-----TSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHH
T ss_pred             eeecCCCcCchHHHHHHHhccccc-----c-----CCHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHH
Confidence            444555667788888887654221     1     122234456678889999988751   248999999999999999


Q ss_pred             HHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeC-CCCCCCCHHHHHHhccc-CceEEEEcccccccccc
Q 017640          147 YSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL-NDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASI  224 (368)
Q Consensus       147 ~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~-~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~  224 (368)
                      .++.. ..++||+|++.++.++...  +...++..|++++.++. ++++.+|+++|++++++ ++++|++++++||||.+
T Consensus        77 ~~~~~-~~~~gd~vlv~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~  153 (385)
T 2bkw_A           77 SNFIL-SKAPNKNVLVVSTGTFSDR--FADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVL  153 (385)
T ss_dssp             HHHSC-TTCSCCEEEEECSSHHHHH--HHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEE
T ss_pred             HHHhc-cCCCCCeEEEEcCCcchHH--HHHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeE
Confidence            99821 0289999988855433322  23455677999999999 78888999999999987 89999999999999999


Q ss_pred             cCHHHHHHHHHhc--CCEEEEecCCcCCcccccCCCCCccEEEecCcC-cCCCCcceEEEEcccccc-cCCC------cc
Q 017640          225 LPIEEIVHWSHDV--GAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLS-AMPP------FL  294 (368)
Q Consensus       225 ~~l~~i~~l~~~~--g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~G~G~l~~~~~li~-~l~~------~~  294 (368)
                      +|+++|.++|++|  |+++|+|++|+.+..++++...++|++++|+|| ++|++|+|++++++++++ .+++      ..
T Consensus       154 ~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~~~~~~~~  233 (385)
T 2bkw_A          154 SDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHG  233 (385)
T ss_dssp             CCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSC
T ss_pred             cCHHHHHHHHHhhCCCCEEEEECccccCCccccccccCceEEEecCccccccCCcceEEEEcHHHHHHHHhhccCCCCCc
Confidence            9999999999999  999999999998887777777789999999999 556889999999998877 6542      11


Q ss_pred             cCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH-HhhcCC
Q 017640          295 GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVI-QERHNT  366 (368)
Q Consensus       295 ~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l-~~~~g~  366 (368)
                      .++.... .......+.. ...+..++++..+++++..+++++.+.+++.+.++.+++++++.+.| .++ |+
T Consensus       234 ~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~  303 (385)
T 2bkw_A          234 YFSSLRR-WTPIMENYEA-GKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL-QL  303 (385)
T ss_dssp             STTCHHH-HHHHHHHHHT-TCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT-CC
T ss_pred             eeecHHH-HhhHHHhhhc-cCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc-Cc
Confidence            1111000 0000000000 01222468999999999999999888789999999999999999999 765 53

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.97  E-value=1e-29  Score=237.99  Aligned_cols=271  Identities=14%  Similarity=0.194  Sum_probs=207.4

Q ss_pred             CeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCC---cchhhHHHHHHHHHHHHHHHHHcCCCCCCc-EEEeCCHHHHH
Q 017640           67 KLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRG---IHFLSAKATDEYELARKKVAAFINASDSGE-IVFTKNATEAI  142 (368)
Q Consensus        67 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~r~~la~~~~~~~~~~-v~~t~g~t~a~  142 (368)
                      +.+|+++.+..++|+.+++++.+.+..+.. +..+   ....+....+..+++++.+++++|++++++ +++|+|+|+++
T Consensus         3 ~~~~l~~~~~~~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~   81 (362)
T 2c0r_A            3 ERAYNFNAGPAALPLEVLERAQAEFVDYQH-TGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQF   81 (362)
T ss_dssp             CCCEECCSSSCCCCHHHHHHHHHTSSSSTT-SSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHH
T ss_pred             cceeeccCCCCCCCHHHHHHHHHHHhhhhh-cCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHH
Confidence            347999999999999999999988765422 1111   112234456778899999999999975325 57889999999


Q ss_pred             HHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC--C--CCCCHHHHHHhcccCceEEEEcccc
Q 017640          143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--D--ESPDLDKLKEMLSRKTKLVVIHHIS  218 (368)
Q Consensus       143 ~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~--~~~d~~~l~~~l~~~~~~v~~~~~~  218 (368)
                      ..++.++    +++||+|++.++.|++..  +...++..| +++.++.++  +  ..+|.++++  +++++++|++++++
T Consensus        82 ~~~~~~l----~~~gd~vl~~~~~~~~~~--~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~~t~~v~~~~~~  152 (362)
T 2c0r_A           82 AMIPMNF----LKEGQTANYVMTGSWASK--ALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQDNAAYLHLTSNE  152 (362)
T ss_dssp             HHHHHHH----CCTTCEEEEEECSHHHHH--HHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCTTEEEEEEESEE
T ss_pred             HHHHHhc----CCCCCeEEEEecCcHhHH--HHHHHHHhC-CeEEEecccccccccCCCHHHcc--cCCCcCEEEEeCCc
Confidence            9999998    789999998877655532  335556679 999999862  2  235666654  67889999999999


Q ss_pred             cccccc-cCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCC
Q 017640          219 NMLASI-LPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGG  297 (368)
Q Consensus       219 n~tG~~-~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~  297 (368)
                      ||||.+ .|+++|      ||+++++|++|+.+..++++.+  .|++++|+||++|++|+|++++++++++.+.+.....
T Consensus       153 n~tG~~~~~l~~i------~~~~vivD~a~~~~~~~~~~~~--~d~~~~s~~K~~g~~G~G~l~~~~~~~~~l~~~~~~~  224 (362)
T 2c0r_A          153 TIEGAQFKAFPDT------GSVPLIGDMSSDILSRPFDLNQ--FGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTM  224 (362)
T ss_dssp             TTTTEECSSCCCC------TTSCEEEECTTTTTSSCCCGGG--CSEEEEETTTTTCCSSCEEEEEEGGGSSSCCTTSCGG
T ss_pred             Cccceeccccccc------CCCEEEEEChhhccCCccchhH--CcEEEEeccccccCcCcEEEEEcHHHHhhccccCchH
Confidence            999996 567776      8999999999999988776655  4899999999999999999999999988776532100


Q ss_pred             cceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHhhc
Q 017640          298 EMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEVKWIICSIIVIQERH  364 (368)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~-g~~~i~~~~~~l~~~l~~~l~~~~  364 (368)
                             .++...  .......+|++...++++..+++.+.+. +++.++++..++++++.+.|.++.
T Consensus       225 -------~~~~~~--~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  283 (362)
T 2c0r_A          225 -------LRYDTY--VKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSG  283 (362)
T ss_dssp             -------GCHHHH--HHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred             -------HhHHHH--hhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence                   000000  0012235699999999999999998886 689999999999999999998764

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.97  E-value=3.8e-30  Score=240.48  Aligned_cols=273  Identities=15%  Similarity=0.162  Sum_probs=209.6

Q ss_pred             EEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchh---hHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCH-HHHHHH
Q 017640           69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFL---SAKATDEYELARKKVAAFINASDSGEIVFTKNA-TEAINL  144 (368)
Q Consensus        69 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~-t~a~~~  144 (368)
                      +|+++.+..++|+.+++++.+.+..+ .+++.+.+..   .+...+..+++++.+++++|.+++++|++|+|+ |+|+..
T Consensus         4 ~~~~~~g~~~~p~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~   82 (360)
T 1w23_A            4 VFNFNAGPSALPKPALERAQKELLNF-NDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTM   82 (360)
T ss_dssp             CEECCSSSCCCCHHHHHHHHHTSSSS-TTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred             eEeecCCCcCCCHHHHHHHHHHhhhh-ccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHH
Confidence            45666666689999999999887654 3443333222   455677888999999999999744589999999 999999


Q ss_pred             HHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC-CCCCCHHHHHH-hcccCceEEEEcccccccc
Q 017640          145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKE-MLSRKTKLVVIHHISNMLA  222 (368)
Q Consensus       145 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~-~l~~~~~~v~~~~~~n~tG  222 (368)
                      ++.++.. ..++||.|+++.++|++     ...++..| +++.+++++ ++.+|+++|++ ++++++++|++++++||||
T Consensus        83 ~~~~l~~-~~~~g~~vi~~~~~~~~-----~~~~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~~~~k~v~~~~~~nptG  155 (360)
T 1w23_A           83 LPMNLLT-KGTIGNYVLTGSWSEKA-----LKEAKLLG-ETHIAASTKANSYQSIPDFSEFQLNENDAYLHITSNNTIYG  155 (360)
T ss_dssp             HHHHHCC-TTCEEEEEECSHHHHHH-----HHHHHTTS-EEEEEEECGGGTSCSCCCGGGCCCCTTEEEEEEESEETTTT
T ss_pred             HHHHhcC-CCCcccEEEecchhHHH-----HHHHHHhC-CeEEeecccccCcCCccchHhhccCCCCCEEEEeCCCCCcc
Confidence            9988821 01346677777665544     22346679 999999875 56689999999 8988999999999999999


Q ss_pred             cccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCcceee
Q 017640          223 SILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISD  302 (368)
Q Consensus       223 ~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~  302 (368)
                      .++|  +|   +++||+++|+|++|+.+..++++..+  |++++|+||.+|++|+|++++++++++.+++.. ++.. ..
T Consensus       156 ~~~~--~i---~~~~~~~li~D~a~~~~~~~~~~~~~--di~~~s~sK~~~~~G~G~~~~~~~~~~~~~~~~-~~~~-~~  226 (360)
T 1w23_A          156 TQYQ--NF---PEINHAPLIADMSSDILSRPLKVNQF--GMIYAGAQKNLGPSGVTVVIVKKDLLNTKVEQV-PTML-QY  226 (360)
T ss_dssp             EECS--SC---CCCCSSCEEEECTTTTTSSCCCGGGC--SEEEEETTTTTSCTTCEEEEEEHHHHCSCCTTC-CGGG-CH
T ss_pred             eecc--cc---cccCCceEEEechhhcCCCCcCcccC--CEEEEEcccccCCCCcEEEEEcHHHHhhcccCC-cchh-hh
Confidence            9988  33   34899999999999988877666543  899999999999889999999999988877654 2111 00


Q ss_pred             cccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHhhcC
Q 017640          303 VFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEVKWIICSIIVIQERHN  365 (368)
Q Consensus       303 ~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~-g~~~i~~~~~~l~~~l~~~l~~~~g  365 (368)
                      ...       ...++..++++...++++..+++++.+. +++.+.++.+++++++.+.|.++++
T Consensus       227 ~~~-------~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  283 (360)
T 1w23_A          227 ATH-------IKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNG  283 (360)
T ss_dssp             HHH-------HHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             hhh-------hhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccC
Confidence            000       0023456799999999999999988876 6889999999999999999988754

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.97  E-value=9.3e-29  Score=233.52  Aligned_cols=270  Identities=17%  Similarity=0.089  Sum_probs=209.8

Q ss_pred             EEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHH
Q 017640           69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS  148 (368)
Q Consensus        69 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~  148 (368)
                      .|+++.. +++++.+.+++.+.+.....++.     ......+..+++++.+++++|.+++ +|++|+|+++|+..++.+
T Consensus        33 ~~~~~~~-~~~~~~v~~a~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~la~~~~~~~~-~i~~~~ggt~a~~~~~~~  105 (397)
T 3f9t_A           33 NIFGSMC-SNVLPITRKIVDIFLETNLGDPG-----LFKGTKLLEEKAVALLGSLLNNKDA-YGHIVSGGTEANLMALRC  105 (397)
T ss_dssp             CBCSCSC-CCCCTHHHHHHHHHTTCCTTSGG-----GBHHHHHHHHHHHHHHHHHTTCTTC-EEEEESCHHHHHHHHHHH
T ss_pred             CeEEEec-CCCcHHHHHHHHHHHhhcCCCcc-----cChhHHHHHHHHHHHHHHHhCCCCC-CEEEecCcHHHHHHHHHH
Confidence            4677764 45567888888887754322221     1124577788999999999999865 999999999999999998


Q ss_pred             ccCC---------CCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc-CceEEEEcccc
Q 017640          149 WGLS---------NLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHIS  218 (368)
Q Consensus       149 ~~~~---------~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~  218 (368)
                      +...         ...+||+|++.+++|++...    .++..|++++.++.++++.+|+++|++++++ ++++|++++++
T Consensus       106 ~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~----~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~  181 (397)
T 3f9t_A          106 IKNIWREKRRKGLSKNEHPKIIVPITAHFSFEK----GREMMDLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGT  181 (397)
T ss_dssp             HHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHH----HHHHHTCEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSC
T ss_pred             HHHHHHhhhhhcccCCCCeEEEECCcchhHHHH----HHHHcCceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCC
Confidence            7211         11249999999999999544    4455699999999998999999999999998 89999999999


Q ss_pred             cccccccCHHHHHHHHHhcCCEEEEecCCcCCcc--------------cccCCCCCccEEEecCcCcC-CCCcceEEEEc
Q 017640          219 NMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM--------------VVDVQGLDADFLVASSHKMC-GPTGIGFLFGK  283 (368)
Q Consensus       219 n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~--------------~~~~~~~~~d~~~~s~~K~~-g~~G~G~l~~~  283 (368)
                      ||||.+.|+++|.++|++||+++|+|++|+.+..              ++++.. +.|++++|+||++ ++.++|+++++
T Consensus       182 nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~  260 (397)
T 3f9t_A          182 TELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILFK  260 (397)
T ss_dssp             TTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEES
T ss_pred             CCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCCceEEEEe
Confidence            9999999999999999999999999999985433              334444 7899999999976 45568999887


Q ss_pred             cc-ccccCC---CcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 017640          284 SD-LLSAMP---PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIV  359 (368)
Q Consensus       284 ~~-li~~l~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~  359 (368)
                      ++ +++.++   ++..++.                .....|+++.....++.++++.+...+.+.+.++..++.+++.+.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~  324 (397)
T 3f9t_A          261 DIGYKRYLDVDAPYLTETR----------------QATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKK  324 (397)
T ss_dssp             SGGGGGGTCEECTTSSSSE----------------ECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHhhccCCccccCCC----------------ccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            65 444442   3322211                112235666667888888888888778889999999999999999


Q ss_pred             HHhhcCCC
Q 017640          360 IQERHNTT  367 (368)
Q Consensus       360 l~~~~g~t  367 (368)
                      |.++ |++
T Consensus       325 L~~~-g~~  331 (397)
T 3f9t_A          325 LKEN-NFK  331 (397)
T ss_dssp             HHHT-TCC
T ss_pred             HHHC-CCE
Confidence            9987 654

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=99.97  E-value=8.2e-29  Score=231.00  Aligned_cols=256  Identities=12%  Similarity=0.130  Sum_probs=207.3

Q ss_pred             CCCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHH
Q 017640           65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN  143 (368)
Q Consensus        65 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~  143 (368)
                      ++++++|+.+... ++++.+.+++.+.+.....++           .....++|+++++++|.+++ +|++|+|+++++.
T Consensus        15 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~-----------~~~~~~l~~~la~~~~~~~~-~i~~~~g~~~a~~   82 (354)
T 3ly1_A           15 TDNPIRINFNENPLGMSPKAQAAARDAVVKANRYA-----------KNEILMLGNKLAAHHQVEAP-SILLTAGSSEGIR   82 (354)
T ss_dssp             SSSCEECSSCCCSSCCCHHHHHHHHHTGGGTTSCC-----------HHHHHHHHHHHHHHTTSCGG-GEEEESHHHHHHH
T ss_pred             CCceEEccCCCCCCCCCHHHHHHHHHHHhhCcCCC-----------CCchHHHHHHHHHHhCCChH-HEEEeCChHHHHH
Confidence            3678999998876 688999999988776432221           23456899999999998764 9999999999999


Q ss_pred             HHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcc--cCceEEEEccccccc
Q 017640          144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS--RKTKLVVIHHISNML  221 (368)
Q Consensus       144 ~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~--~~~~~v~~~~~~n~t  221 (368)
                      .++.++    +++||+|++.+|+|++.    ...++..|++++.++.++++.+|+++|+++++  +++++|++++++|||
T Consensus        83 ~~~~~l----~~~gd~vl~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~npt  154 (354)
T 3ly1_A           83 AAIEAY----ASLEAQLVIPELTYGDG----EHFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPT  154 (354)
T ss_dssp             HHHHHH----CCTTCEEEEESSSCTHH----HHHHHHTTCEEEEECCCTTSCCCHHHHHHHHHTCSSCEEEEEESSCTTT
T ss_pred             HHHHHH----hCCCCeEEECCCCchHH----HHHHHHcCCEEEEecCCCCCCCCHHHHHHHhccCCCCCEEEEeCCCCCc
Confidence            999998    78999999999999884    44456679999999998889999999999998  789999999999999


Q ss_pred             ccccCHHHHHHHHHh--cCCEEEEecCCcCCccc------cc-CCCC-CccEEEecCcCcCCCCc--ceEEEEccccccc
Q 017640          222 ASILPIEEIVHWSHD--VGAKVLVDACQSVPHMV------VD-VQGL-DADFLVASSHKMCGPTG--IGFLFGKSDLLSA  289 (368)
Q Consensus       222 G~~~~l~~i~~l~~~--~g~~li~D~a~~~~~~~------~~-~~~~-~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~  289 (368)
                      |.++|.+++.++++.  ||+++|+|++|+.....      +. .... +.+++++|+||.+|++|  +|++++++++++.
T Consensus       155 G~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~  234 (354)
T 3ly1_A          155 GTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAHPTVIAL  234 (354)
T ss_dssp             CCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECCHHHHHH
T ss_pred             CCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecCHHHHHH
Confidence            999998888888877  99999999999833221      11 1223 57799999999998777  8999999988877


Q ss_pred             CCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          290 MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       290 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      +.....                       .++++.....++..+++..  ..++.++++..++.+++.+.|.+. |+
T Consensus       235 ~~~~~~-----------------------~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~-~~  285 (354)
T 3ly1_A          235 MGRYVA-----------------------GEKINFSGVDAALASMNDS--AFITYSKKSNDVSRQILLKALEDL-KL  285 (354)
T ss_dssp             HGGGTT-----------------------CSCCCHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHHHHHHH-TC
T ss_pred             HHHhcC-----------------------CCCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHC-CC
Confidence            664432                       1377888888888887744  236788889999999999999876 54

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.97  E-value=6.6e-29  Score=232.50  Aligned_cols=256  Identities=15%  Similarity=0.125  Sum_probs=204.8

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL  144 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~  144 (368)
                      +++++|+.+.+. ++++.+.+++.+.+.....++           .....++|+++++++|.+++ +|++|+|+++++..
T Consensus        32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~-----------~~~~~~lr~~la~~~~~~~~-~v~~~~g~t~a~~~   99 (363)
T 3ffh_A           32 TKITKLSSNENPLGTSKKVAAIQANSSVETEIYP-----------DGWASSLRKEVADFYQLEEE-ELIFTAGVDELIEL   99 (363)
T ss_dssp             SCCEECSSCSCTTCCCHHHHHHHHTCBSCCCBC---------------CHHHHHHHHHHHTCCGG-GEEEESSHHHHHHH
T ss_pred             CceEEccCCCCCCCCCHHHHHHHHHHHHHhhcCC-----------CcchHHHHHHHHHHhCCChh-hEEEeCCHHHHHHH
Confidence            568999998776 578899999887654322222           22345899999999998764 99999999999999


Q ss_pred             HHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccc
Q 017640          145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI  224 (368)
Q Consensus       145 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~  224 (368)
                      ++.++    +++||+|++.+|+|++.    ...++..|++++.++.++++.+|++++++++++++++|++++++||||.+
T Consensus       100 ~~~~~----~~~gd~vl~~~~~~~~~----~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~  171 (363)
T 3ffh_A          100 LTRVL----LDTTTNTVMATPTFVQY----RQNALIEGAEVREIPLLQDGEHDLEGMLNAIDEKTTIVWICNPNNPTGNY  171 (363)
T ss_dssp             HHHHH----CSTTCEEEEEESSCHHH----HHHHHHHTCEEEEEECCTTSCCCHHHHHHHCCTTEEEEEEESSCTTTCCC
T ss_pred             HHHHH----ccCCCEEEEcCCChHHH----HHHHHHcCCEEEEecCCCCCCcCHHHHHHhcccCCCEEEEeCCCCCcCCC
Confidence            99998    88999999999988874    44556679999999998889999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHhc--CCEEEEecCCcCCcc-----ccc-CCCCCccEEEecCcCcCCCCc--ceEEEEcccccccCCCcc
Q 017640          225 LPIEEIVHWSHDV--GAKVLVDACQSVPHM-----VVD-VQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFL  294 (368)
Q Consensus       225 ~~l~~i~~l~~~~--g~~li~D~a~~~~~~-----~~~-~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~~~~  294 (368)
                      +|+++|.++++.+  |+++|+|++|+....     ... ....+.++++.|++|.+|++|  +|++++++++++.+++..
T Consensus       172 ~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~  251 (363)
T 3ffh_A          172 IELADIQAFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADKEIIRQLNIVR  251 (363)
T ss_dssp             CCHHHHHHHHTTSCTTSEEEEECTTGGGCSSCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHhCCCCcEEEEeCchHhhcCccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecCHHHHHHHHHhC
Confidence            9999999999887  999999999982211     111 122356688999999999888  599999998887765432


Q ss_pred             cCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          295 GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       295 ~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      .                       .++.+.....++..+++..  ..++.++++..++.+++.+.|.+++|+
T Consensus       252 ~-----------------------~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~~g~  298 (363)
T 3ffh_A          252 P-----------------------PFNTTSIGQKLAIEAIKDQ--AFIGECRTSNANGIKQYEAFAKRFEKV  298 (363)
T ss_dssp             C-----------------------SCCCBHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             C-----------------------CCCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHhhCCCc
Confidence            1                       2367778888888887633  246788899999999999999886664

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=99.97  E-value=1.8e-28  Score=231.63  Aligned_cols=261  Identities=16%  Similarity=0.138  Sum_probs=196.9

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----CCC-CCCcEEEeCCHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS-DSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~-~~~~v~~t~g~t  139 (368)
                      ++.++|+.+.+. +.++.+.+++.+.+.... .    .+...    ....++|+.+++++    |.+ ++++|++|+|++
T Consensus        31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~----~y~~~----~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~  101 (385)
T 1b5p_A           31 VDLVALTAGEPDFDTPEHVKEAARRALAQGK-T----KYAPP----AGIPELREALAEKFRRENGLSVTPEETIVTVGGS  101 (385)
T ss_dssp             CCCEECCCSSCSSCCCHHHHHHHHHHHHTTC-C----SCCCT----TCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHH
T ss_pred             CCEEEecCCCCCCCCCHHHHHHHHHHHhcCC-C----CCCCC----CCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChH
Confidence            567899888776 567889999888775411 1    11111    11225666666665    432 234999999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC--CCCCCHHHHHHhcccCceEEEEccc
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVVIHHI  217 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~~~~~v~~~~~  217 (368)
                      +++.+++.++    +++||+|++++|+|++    +...++..|++++.++.++  ++.+|+++|++++++++++|+++++
T Consensus       102 ~al~~~~~~l----~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p  173 (385)
T 1b5p_A          102 QALFNLFQAI----LDPGDEVIVLSPYWVS----YPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSP  173 (385)
T ss_dssp             HHHHHHHHHH----CCTTCEEEEEESCCTH----HHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESS
T ss_pred             HHHHHHHHHh----cCCCCEEEEcCCCchh----HHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCCCCEEEEEeCC
Confidence            9999999998    8899999999999887    4455567799999999974  4678999999999888999999999


Q ss_pred             ccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc-----c-ccCCCCCccEEEecCcCcCCCCc--ceEEEEcccc
Q 017640          218 SNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM-----V-VDVQGLDADFLVASSHKMCGPTG--IGFLFGKSDL  286 (368)
Q Consensus       218 ~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~-----~-~~~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~l  286 (368)
                      +||||.++|   +++|.++|++||+++|+|++|+....     + .++.. +.+++++|+||.+|++|  +|++++++++
T Consensus       174 ~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~-~~~i~~~s~SK~~~~~G~RiG~~~~~~~~  252 (385)
T 1b5p_A          174 NNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAP-EHTLTVNGAAKAFAMTGWRIGYACGPKEV  252 (385)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCT-TTEEEEEESTTTTTCGGGCCEEEECCHHH
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCC-CCEEEEEechhhcCCcccceEEEEeCHHH
Confidence            999999998   88999999999999999999985322     1 12222 67899999999999888  9999999988


Q ss_pred             cccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH---HHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          287 LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY---LSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       287 i~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~---~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      ++.+.+....+                     ..+.+.....++..+++.   ..+ .++.++++..+..+++.+.|.++
T Consensus       253 ~~~l~~~~~~~---------------------~~~~~~~~~~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~  310 (385)
T 1b5p_A          253 IKAMASVSRQS---------------------TTSPDTIAQWATLEALTNQEASRA-FVEMAREAYRRRRDLLLEGLTAL  310 (385)
T ss_dssp             HHHHHHHHHTT---------------------TCSCCHHHHHHHHHHHHCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhc---------------------cCCCCHHHHHHHHHHHhCCCcchH-HHHHHHHHHHHHHHHHHHHHHHC
Confidence            77765433211                     114556666666666653   222 26778888888999999999876


Q ss_pred             cCCC
Q 017640          364 HNTT  367 (368)
Q Consensus       364 ~g~t  367 (368)
                       |++
T Consensus       311 -g~~  313 (385)
T 1b5p_A          311 -GLK  313 (385)
T ss_dssp             -TCC
T ss_pred             -CCe
Confidence             643

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=99.96  E-value=1.7e-28  Score=231.83  Aligned_cols=262  Identities=16%  Similarity=0.145  Sum_probs=200.5

Q ss_pred             CeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----CCC-CCCc-EEEeCCHH
Q 017640           67 KLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS-DSGE-IVFTKNAT  139 (368)
Q Consensus        67 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~-~~~~-v~~t~g~t  139 (368)
                      ++++|+.+... +.++.+.+++.+.+.... .    .+..    .....++|+.+++++    |.+ ++++ |++|+|++
T Consensus        27 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~----~y~~----~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~   97 (389)
T 1gd9_A           27 DVISLGIGEPDFDTPQHIKEYAKEALDKGL-T----HYGP----NIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGAN   97 (389)
T ss_dssp             SCEECCCCSCSSCCCHHHHHHHHHHHHTTC-C----SCCC----TTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTT
T ss_pred             CeEecCCCCCCCCCCHHHHHHHHHHHhCCC-C----CCCC----CCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChH
Confidence            56899888776 568899999988876421 1    1111    111235666666666    853 2247 99999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC--CCCCCHHHHHHhcccCceEEEEccc
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVVIHHI  217 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~~~~~v~~~~~  217 (368)
                      +++..++.++    +++||+|++.+|+|++...    .++..|++++.++.++  ++.+|+++|++++++++++|+++++
T Consensus        98 ~a~~~~~~~~----~~~gd~vl~~~~~~~~~~~----~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~  169 (389)
T 1gd9_A           98 QAFLMGLSAF----LKDGEEVLIPTPAFVSYAP----AVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSP  169 (389)
T ss_dssp             HHHHHHHTTT----CCTTCEEEEEESCCTTHHH----HHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESS
T ss_pred             HHHHHHHHHh----CCCCCEEEEcCCCchhHHH----HHHHCCCEEEEeccCCccCCCCCHHHHHHhcCcCceEEEEECC
Confidence            9999999987    7899999999999999543    3455699999999875  4678999999999888999999999


Q ss_pred             ccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc----cc---cCCC-CCccEEEecCcCcCCCCc--ceEEEEcc
Q 017640          218 SNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VV---DVQG-LDADFLVASSHKMCGPTG--IGFLFGKS  284 (368)
Q Consensus       218 ~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~----~~---~~~~-~~~d~~~~s~~K~~g~~G--~G~l~~~~  284 (368)
                      +||||.++|   +++|.++|++||+++|+|++|+.+..    ..   ++.. .+.|++++|+||.+|++|  +|++++++
T Consensus       170 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~  249 (389)
T 1gd9_A          170 CNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPS  249 (389)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECCH
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceEEEEECH
Confidence            999999997   88999999999999999999986543    11   2221 357899999999999888  79999999


Q ss_pred             cccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHhh
Q 017640          285 DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       285 ~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~-g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      ++++.+.+...++                     .++.+.....++..+++..... .++.++++..++.+++.+.|.+.
T Consensus       250 ~~~~~l~~~~~~~---------------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  308 (389)
T 1gd9_A          250 WIIERMVKFQMYN---------------------ATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM  308 (389)
T ss_dssp             HHHHHHHHHHTTT---------------------TCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhh---------------------ccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc
Confidence            8887766443221                     1256777777777777654331 46788888999999999999886


Q ss_pred             cCCC
Q 017640          364 HNTT  367 (368)
Q Consensus       364 ~g~t  367 (368)
                       |++
T Consensus       309 -g~~  311 (389)
T 1gd9_A          309 -GLP  311 (389)
T ss_dssp             -TCC
T ss_pred             -CCe
Confidence             544

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.96  E-value=1.2e-28  Score=231.19  Aligned_cols=256  Identities=16%  Similarity=0.153  Sum_probs=206.1

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHH--hhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEA--YNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI  142 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~  142 (368)
                      +++++|+.+... ++++.+.+++.+.+..  ...++.           ....++|+++++++|.+++++|++|+|+++++
T Consensus        30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-----------~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~   98 (367)
T 3euc_A           30 HGLVKLDAMENPYRLPPALRSELAARLGEVALNRYPV-----------PSSEALRAKLKEVMQVPAGMEVLLGNGSDEII   98 (367)
T ss_dssp             TTCEECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSCC-----------CCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHH
T ss_pred             CCeeEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC-----------CcHHHHHHHHHHHhCCCCcceEEEcCCHHHHH
Confidence            678999998876 6789999999988874  222221           12348999999999994335999999999999


Q ss_pred             HHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc-CceEEEEccccccc
Q 017640          143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNML  221 (368)
Q Consensus       143 ~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~t  221 (368)
                      ..++.++    +++||+|++.+++|++....    ++..|++++.++.++++.+|+++|++++++ ++++|++++++|||
T Consensus        99 ~~~~~~~----~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~npt  170 (367)
T 3euc_A           99 SMLALAA----ARPGAKVMAPVPGFVMYAMS----AQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPT  170 (367)
T ss_dssp             HHHHHHT----CCTTCEEEEEESCSCCSCHH----HHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESSCTTT
T ss_pred             HHHHHHH----cCCCCEEEEcCCCHHHHHHH----HHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEcCCCCCC
Confidence            9999988    88999999999999986543    456699999999998889999999999988 89999999999999


Q ss_pred             ccccC---HHHHHHHHHhc--CCEEEEecCCcCCcc---cccCCCCCccEEEecCcCcCCCCc--ceEEEEcccccccCC
Q 017640          222 ASILP---IEEIVHWSHDV--GAKVLVDACQSVPHM---VVDVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMP  291 (368)
Q Consensus       222 G~~~~---l~~i~~l~~~~--g~~li~D~a~~~~~~---~~~~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~  291 (368)
                      |.++|   +++|.++|++|  |+++|+|++|+....   .......+.++++.|+||. +++|  +|++++++++++.+.
T Consensus       171 G~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~G~r~G~~~~~~~~~~~~~  249 (367)
T 3euc_A          171 GNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKL-GLAGIRLGYVAGDPQWLEQLD  249 (367)
T ss_dssp             CCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCT-TSCSCCEEEEEECHHHHHHHG
T ss_pred             CCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhh-cccccCceeeeeCHHHHHHHH
Confidence            99987   67788889999  999999999883211   1123344677999999998 7666  899999998887765


Q ss_pred             CcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       292 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      ....                       ..+.+.....++..+++.  ...++..+++..++.+++.+.|.+++|+
T Consensus       250 ~~~~-----------------------~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~g~  299 (367)
T 3euc_A          250 KVRP-----------------------PYNVNVLTEATALFALEH--VAVLDEQAAQLRAERSRVAEGMAAHGGV  299 (367)
T ss_dssp             GGCC-----------------------SSCCCHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHTSTTC
T ss_pred             HhCC-----------------------CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            4331                       125777888888888876  2236788899999999999999887665

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=99.96  E-value=8.3e-29  Score=237.20  Aligned_cols=277  Identities=13%  Similarity=0.129  Sum_probs=204.1

Q ss_pred             hcCCCCcccccccCCCCeEEeccCCCC-----CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcC
Q 017640           51 TRPDFPILHQEVYGSKKLVYLDNAATS-----QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN  125 (368)
Q Consensus        51 ~r~~f~~~~~~~~~~~~~i~l~~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~  125 (368)
                      +|..+..+.....+++++|+|+.+...     ++++.+.+++.+.+.....+.+.        ......++|++++++++
T Consensus        39 i~~~~~~~~~~~~~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~~y~--------~~~g~~~lr~~la~~~~  110 (427)
T 3dyd_A           39 IRAIVDNMKVKPNPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYA--------PSIGFLSSREEIASYYH  110 (427)
T ss_dssp             --------CCCCCTTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSSSCC--------CTTCCHHHHHHHHHHHC
T ss_pred             HHHHHHHHhhcccCCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCCCCC--------CCCCcHHHHHHHHHHHh
Confidence            566655443333324678999998854     68999999999988763211110        01223489999999998


Q ss_pred             -----CCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC--CCCCCH
Q 017640          126 -----ASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDL  198 (368)
Q Consensus       126 -----~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~  198 (368)
                           .++ ++|++|+|+++|+.+++.++    .++||+|++.+|+|++.    ...++..|++++.++.++  ++.+|+
T Consensus       111 ~~~~~~~~-~~v~~t~g~t~al~~~~~~l----~~~gd~vl~~~p~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~d~  181 (427)
T 3dyd_A          111 CPEAPLEA-KDVILTSGCSQAIDLCLAVL----ANPGQNILVPRPGFSLY----KTLAESMGIEVKLYNLLPEKSWEIDL  181 (427)
T ss_dssp             BTTBCCCG-GGEEEESSHHHHHHHHHHHH----CCTTCEEEEEESCCTHH----HHHHHHTTCEEEEEEEEGGGTTEECH
T ss_pred             hcCCCCCh-HHEEEecCcHHHHHHHHHHh----cCCCCEEEEcCCCchhH----HHHHHHcCCEEEEEecccccCCCCCH
Confidence                 444 49999999999999999998    78999999999988874    455667799999999863  467899


Q ss_pred             HHHHHhcccCceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCc----ccccCCCCC---ccEEEecC
Q 017640          199 DKLKEMLSRKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----MVVDVQGLD---ADFLVASS  268 (368)
Q Consensus       199 ~~l~~~l~~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~----~~~~~~~~~---~d~~~~s~  268 (368)
                      ++|++++++++++|++++++||||.++|   +++|+++|++||+++|+|++|+...    ....+...+   ..++++|+
T Consensus       182 ~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~  261 (427)
T 3dyd_A          182 KQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGL  261 (427)
T ss_dssp             HHHHSSCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEES
T ss_pred             HHHHHHhccCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeec
Confidence            9999999989999999999999999999   9999999999999999999998422    111222222   34778899


Q ss_pred             cCcCCCCc--ceEEEEcc-------cccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 017640          269 HKMCGPTG--IGFLFGKS-------DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST  339 (368)
Q Consensus       269 ~K~~g~~G--~G~l~~~~-------~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~  339 (368)
                      ||.||++|  +|++++++       ++++.+.....                      ...+++.....++..+++....
T Consensus       262 sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~~----------------------~~~~~~~~~~~a~~~~L~~~~~  319 (427)
T 3dyd_A          262 AKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQ----------------------RILGPCTIVQGALKSILCRTPG  319 (427)
T ss_dssp             TTTSSCGGGCCEEEEEECSTTSSHHHHHHHHHHHHH----------------------HHCCSCHHHHHHHHHHHHHSCH
T ss_pred             cccCCCcCcceEEEEecCcchhhHHHHHHHHHHHHh----------------------ccCCCCHHHHHHHHHHHHhcCH
Confidence            99998888  89999885       33333322110                      0126778888888887775333


Q ss_pred             hCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          340 IGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       340 ~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      ..++.+.++..++++++.+.|++++|+
T Consensus       320 ~~~~~~~~~~~~~~~~l~~~L~~~~g~  346 (427)
T 3dyd_A          320 EFYHNTLSFLKSNADLCYGALAAIPGL  346 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTTE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            446788888999999999999887664

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=99.96  E-value=6.1e-29  Score=234.35  Aligned_cols=260  Identities=16%  Similarity=0.165  Sum_probs=205.7

Q ss_pred             CeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHH
Q 017640           67 KLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV  145 (368)
Q Consensus        67 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~  145 (368)
                      ++++|+.+.+. +.++.+.+++.+.+...  +.+    ..    .....++|+.++++++.+++ +|++|+|+++++..+
T Consensus        26 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~~y----~~----~~~~~~l~~~la~~~~~~~~-~v~~~~g~~~a~~~~   94 (381)
T 1v2d_A           26 GAVNLGQGFPSNPPPPFLLEAVRRALGRQ--DQY----AP----PAGLPALREALAEEFAVEPE-SVVVTSGATEALYVL   94 (381)
T ss_dssp             TCEECCCCSCSSCCCHHHHHHHHHHTTTS--CSC----CC----TTCCHHHHHHHHHHHTSCGG-GEEEESSHHHHHHHH
T ss_pred             CeEEecCCCCCCCCCHHHHHHHHHHHHHh--cCC----CC----CCCCHHHHHHHHHhcCCChh-hEEEcCChHHHHHHH
Confidence            56788887766 57889999998887541  111    10    11234899999999998765 899999999999999


Q ss_pred             HHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC---CCCCCCHHHHHHhcccCceEEEEcccccccc
Q 017640          146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN---DDESPDLDKLKEMLSRKTKLVVIHHISNMLA  222 (368)
Q Consensus       146 ~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~---~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG  222 (368)
                      +.++    +++||+|++.+++|++..    ..++..|++++.++.+   +++.+|+++|++++++++++|++++++||||
T Consensus        95 ~~~~----~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG  166 (381)
T 1v2d_A           95 LQSL----VGPGDEVVVLEPFFDVYL----PDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTG  166 (381)
T ss_dssp             HHHH----CCTTCEEEEEESCCTTHH----HHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTTC
T ss_pred             HHHh----CCCCCEEEEcCCCchhHH----HHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcCcCCEEEEECCCCCCCC
Confidence            9998    789999999999999854    3456679999999986   5578899999999988999999999999999


Q ss_pred             cccC---HHHHHHHHHhcCCEEEEecCCcCCc---ccccCC--CCCccEEEecCcCcCCCCc--ceEEEEcccccccCCC
Q 017640          223 SILP---IEEIVHWSHDVGAKVLVDACQSVPH---MVVDVQ--GLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPP  292 (368)
Q Consensus       223 ~~~~---l~~i~~l~~~~g~~li~D~a~~~~~---~~~~~~--~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~~  292 (368)
                      .++|   +++|.++|++||+++|+|++|+...   ...++.  ..+.|++++|+||.+|++|  +|++++++++++.+..
T Consensus       167 ~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~  246 (381)
T 1v2d_A          167 LVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAG  246 (381)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHhcCCCEEEEeechhhcCCcccceEEEEeCHHHHHHHHH
Confidence            9998   8899999999999999999998532   112222  3478999999999999888  9999999988876653


Q ss_pred             cccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          293 FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS-TIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       293 ~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~-~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      ...                     +...+.+.....++..+++... ...++.++++..++.+++.+.|.+. |++
T Consensus       247 ~~~---------------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  300 (381)
T 1v2d_A          247 MRQ---------------------WTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GLR  300 (381)
T ss_dssp             HHH---------------------HHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             HHh---------------------hcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC-CCE
Confidence            221                     1123667777778888887653 3347888999999999999999874 543

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.96  E-value=9.8e-29  Score=231.52  Aligned_cols=254  Identities=15%  Similarity=0.135  Sum_probs=203.5

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL  144 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~  144 (368)
                      +++++|+.+.+. ++++.+.+++.+.+.....++...          . .++|+++++++|.+++ +|++|+|+++++..
T Consensus        30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~----------~-~~lr~~la~~~~~~~~-~v~~~~g~~~a~~~   97 (365)
T 3get_A           30 KEVIKLASNENPFGTPPKAIECLRQNANKAHLYPDDS----------M-IELKSTLAQKYKVQNE-NIIIGAGSDQVIEF   97 (365)
T ss_dssp             SCCEECSSCCCTTCSCHHHHHHHHHHGGGTTSCCCTT----------C-HHHHHHHHHHHTCCGG-GEEEESSHHHHHHH
T ss_pred             CceEEecCCCCCCCCCHHHHHHHHHHHHhhccCCCCC----------h-HHHHHHHHHHhCCCcc-eEEECCCHHHHHHH
Confidence            467999988766 678999999998876544443211          1 2799999999998654 99999999999999


Q ss_pred             HHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeC-CCCCCCCHHHHHHhcccCceEEEEccccccccc
Q 017640          145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL-NDDESPDLDKLKEMLSRKTKLVVIHHISNMLAS  223 (368)
Q Consensus       145 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~-~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~  223 (368)
                      ++.++    +++||+|++.+|+|++..    ..++..|++++.+++ ++++ +|+++|++++++++++|++++++||||.
T Consensus        98 ~~~~l----~~~gd~vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~-~d~~~l~~~l~~~~~~v~~~~p~nptG~  168 (365)
T 3get_A           98 AIHSK----LNSKNAFLQAGVTFAMYE----IYAKQCGAKCYKTQSITHNL-DEFKKLYETHKDEIKLIFLCLPNNPLGE  168 (365)
T ss_dssp             HHHHH----CCTTCEEEECSSCCTHHH----HHHHHHTCEEEECSSSSCCH-HHHHHHHHHTTTTEEEEEEESSCTTTCC
T ss_pred             HHHHH----hCCCCEEEEeCCChHHHH----HHHHHcCCEEEEEecCCCCC-CCHHHHHHHhCCCCCEEEEcCCCCCCCC
Confidence            99998    899999999999998744    445566999999998 5678 9999999999999999999999999999


Q ss_pred             ccCHHHHHHHHH--hcCCEEEEecCCc------CCcccccC----CCCCccEEEecCcCcCCCCc--ceEEEEccccccc
Q 017640          224 ILPIEEIVHWSH--DVGAKVLVDACQS------VPHMVVDV----QGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSA  289 (368)
Q Consensus       224 ~~~l~~i~~l~~--~~g~~li~D~a~~------~~~~~~~~----~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~  289 (368)
                      ++|++++.++++  ++|+++|+|++|+      .+..+.+.    ...+.+++++|+||.+|++|  +|++++++++++.
T Consensus       169 ~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~  248 (365)
T 3get_A          169 CLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIANANIISA  248 (365)
T ss_dssp             CCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEECHHHHHH
T ss_pred             CcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcCHHHHHH
Confidence            999888888888  7799999999998      32221211    22357799999999998777  8999999888876


Q ss_pred             CCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          290 MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       290 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      +.....                       ..+++.....++..+++..  ..++.++++..++.+++.+.|.++ |+
T Consensus       249 ~~~~~~-----------------------~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~-g~  299 (365)
T 3get_A          249 FYKLRA-----------------------PFNVSNLALKAAVAAMDDD--EFTEKTLENNFSQMELYKEFAKKH-NI  299 (365)
T ss_dssp             HHHHSC-----------------------TTCSCHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHhcC-----------------------CCCcCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHhC-CC
Confidence            653321                       1257778888888887743  347788889999999999999876 54

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=99.96  E-value=2e-28  Score=229.86  Aligned_cols=253  Identities=15%  Similarity=0.158  Sum_probs=196.4

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHh-hccCCCCcchhhHHHHHHHHHHHHHHHHHcC------CCCCCcEEEeCC
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAY-NSNVHRGIHFLSAKATDEYELARKKVAAFIN------ASDSGEIVFTKN  137 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------~~~~~~v~~t~g  137 (368)
                      +++++|+.+.++ ..++.+.+++.+.+... ..++.          .....++|+.++++++      .++ ++|++|+|
T Consensus        29 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~----------~~~~~~l~~~la~~~~~~~g~~~~~-~~v~~~~g   97 (370)
T 2z61_A           29 KKVIHLEIGEPDFNTPKPIVDEGIKSLKEGKTHYTD----------SRGILELREKISELYKDKYKADIIP-DNIIITGG   97 (370)
T ss_dssp             CCCEECCCCSCSSCCCHHHHHHHHHHHHTTCCSCCC----------TTCCHHHHHHHHHHHHHHSSCCCCG-GGEEEESS
T ss_pred             CCEEEccCCCCCCCCCHHHHHHHHHHHHcCccCCCC----------CCCCHHHHHHHHHHHHHHhCCCCCh-hhEEECCC
Confidence            578999998876 35889999998887642 11111          1112357777777764      333 48999999


Q ss_pred             HHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEccc
Q 017640          138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHI  217 (368)
Q Consensus       138 ~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~  217 (368)
                      +++++..++.++    +++||+|++.+|+|++...    .++..|++++.++      +|+++|++++++++++|+++++
T Consensus        98 ~~~a~~~~~~~~----~~~gd~vl~~~p~~~~~~~----~~~~~g~~~~~v~------~d~~~l~~~l~~~~~~v~~~~p  163 (370)
T 2z61_A           98 SSLGLFFALSSI----IDDGDEVLIQNPCYPCYKN----FIRFLGAKPVFCD------FTVESLEEALSDKTKAIIINSP  163 (370)
T ss_dssp             HHHHHHHHHHHH----CCTTCEEEEESSCCTHHHH----HHHHTTCEEEEEC------SSHHHHHHHCCSSEEEEEEESS
T ss_pred             hHHHHHHHHHHh----cCCCCEEEEeCCCchhHHH----HHHHcCCEEEEeC------CCHHHHHHhcccCceEEEEcCC
Confidence            999999999998    7899999999999998543    3556799999988      5899999999888999999999


Q ss_pred             ccccccccCHHHHHHHHHhcCCEEEEecCCcCCcc---cccCC----CCCccEEEecCcCcCCCCc--ceEEEEcccccc
Q 017640          218 SNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM---VVDVQ----GLDADFLVASSHKMCGPTG--IGFLFGKSDLLS  288 (368)
Q Consensus       218 ~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~---~~~~~----~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~  288 (368)
                      +||||.++|.+ |.++|++||+++|+|++|+.+..   +.++.    ..+.|++++|+||.+|++|  +|++++++++++
T Consensus       164 ~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~  242 (370)
T 2z61_A          164 SNPLGEVIDRE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISNDEIIE  242 (370)
T ss_dssp             CTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECCHHHHH
T ss_pred             CCCcCcccCHH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceEEEEEECHHHHH
Confidence            99999999999 99999999999999999986433   12221    2367899999999999888  999999998887


Q ss_pred             cCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          289 AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       289 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      .+++...++                     .++.+.....++..+++.+....++.++++..++.+++.+.|.+. |+
T Consensus       243 ~~~~~~~~~---------------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~  298 (370)
T 2z61_A          243 AILKLQQNL---------------------FISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF-GW  298 (370)
T ss_dssp             HHHHHHHHH---------------------TSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHHHHhhc---------------------ccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence            766443211                     126677777777777765223346788888999999999999876 54

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.96  E-value=1.9e-28  Score=231.82  Aligned_cols=260  Identities=16%  Similarity=0.155  Sum_probs=197.1

Q ss_pred             CCCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----CCC-CCCcEEEeCCH
Q 017640           65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS-DSGEIVFTKNA  138 (368)
Q Consensus        65 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~-~~~~v~~t~g~  138 (368)
                      ++++++|+.+.+. +.++.+.+++.+.+.... .    .+..    .....++|+.+++++    |.+ ++++|++|+|+
T Consensus        40 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~----~y~~----~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~  110 (389)
T 1o4s_A           40 GEDVINLTAGEPDFPTPEPVVEEAVRFLQKGE-V----KYTD----PRGIYELREGIAKRIGERYKKDISPDQVVVTNGA  110 (389)
T ss_dssp             TCCCEECCCSSCSSCCCHHHHHHHHHHHTTCC-C----CCCC----TTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHH
T ss_pred             CCCEEEccCCCCCCCCCHHHHHHHHHHHhcCC-C----CCCC----CCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCH
Confidence            3678899988776 567889999888775421 1    1111    111235666677666    763 33599999999


Q ss_pred             HHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC--CCCCCHHHHHHhcccCceEEEEcc
Q 017640          139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVVIHH  216 (368)
Q Consensus       139 t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~~~~~v~~~~  216 (368)
                      ++++..++.++    +++||+|++.+|+|++..    ..++..|++++.++.++  ++.+|+++|++++++++++|++++
T Consensus       111 t~al~~~~~~l----~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~  182 (389)
T 1o4s_A          111 KQALFNAFMAL----LDPGDEVIVFSPVWVSYI----PQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINS  182 (389)
T ss_dssp             HHHHHHHHHHH----CCTTCEEEEEESCCTTHH----HHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEES
T ss_pred             HHHHHHHHHHh----CCCCCEEEEcCCCchhHH----HHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccCceEEEEcC
Confidence            99999999998    789999999999999854    34456799999999875  467899999999988999999999


Q ss_pred             cccccccccC---HHHHHHHHHhcCCEEEEecCCcCCccc---c---cCCC-CCccEEEecCcCcCCCCc--ceEEEEcc
Q 017640          217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV---V---DVQG-LDADFLVASSHKMCGPTG--IGFLFGKS  284 (368)
Q Consensus       217 ~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~~---~---~~~~-~~~d~~~~s~~K~~g~~G--~G~l~~~~  284 (368)
                      ++||||.++|   +++|.++|++||+++|+|++|+.+...   .   .+.. .+.|++++|+||.+|++|  +|++++++
T Consensus       183 p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~~~  262 (389)
T 1o4s_A          183 PNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSE  262 (389)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccceEEEEeCH
Confidence            9999999998   899999999999999999999865431   1   2222 468999999999999888  89999999


Q ss_pred             cccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhc
Q 017640          285 DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERH  364 (368)
Q Consensus       285 ~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~  364 (368)
                      ++++.+.+...++.                     .+.+.....++..++   +. +++.++++..++.+++.+.|.+. 
T Consensus       263 ~~~~~l~~~~~~~~---------------------~~~~~~~~~a~~~~l---~~-~~~~~~~~~~~~~~~l~~~L~~~-  316 (389)
T 1o4s_A          263 KVATAVSKIQSHTT---------------------SCINTVAQYAALKAL---EV-DNSYMVQTFKERKNFVVERLKKM-  316 (389)
T ss_dssp             HHHHHHHHHHHHHT---------------------CSCCHHHHHHHHHHT---TC-CCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHhhhcc---------------------cCCCHHHHHHHHHHH---hc-cHHHHHHHHHHHHHHHHHHHHhc-
Confidence            88877664432111                     133444444444443   33 47888999999999999999886 


Q ss_pred             CCC
Q 017640          365 NTT  367 (368)
Q Consensus       365 g~t  367 (368)
                      |++
T Consensus       317 g~~  319 (389)
T 1o4s_A          317 GVK  319 (389)
T ss_dssp             TCC
T ss_pred             CCe
Confidence            543

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=99.96  E-value=5.4e-28  Score=228.33  Aligned_cols=267  Identities=16%  Similarity=0.123  Sum_probs=195.7

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC-CCCcEEEeCCHHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-DSGEIVFTKNATEAIN  143 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~~v~~t~g~t~a~~  143 (368)
                      +++++|+.+... +.++.+.+++.+.+.... .    .+....+..+..+.+.+.+.+.+|.+ .+++|++|+|+++|+.
T Consensus        30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~----~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~  104 (388)
T 1j32_A           30 IDVCSFSAGEPDFNTPKHIVEAAKAALEQGK-T----RYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIF  104 (388)
T ss_dssp             CCCEECCCSSCSSCCCHHHHHHHHHHHHTTC-C----SCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred             CCEEECCCCCCCCCCCHHHHHHHHHHHhcCC-C----CCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHH
Confidence            567899888766 568889999988875421 0    11111112333334444444444643 2348999999999999


Q ss_pred             HHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC--CCCCCHHHHHHhcccCceEEEEccccccc
Q 017640          144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVVIHHISNML  221 (368)
Q Consensus       144 ~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~~~~~v~~~~~~n~t  221 (368)
                      .++.++    +++||+|++.+|+|++..    ..++..|++++.++.++  ++.+|+++|++++++++++|++++++|||
T Consensus       105 ~~~~~~----~~~gd~vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~npt  176 (388)
T 1j32_A          105 NLMLAM----IEPGDEVIIPAPFWVSYP----EMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPT  176 (388)
T ss_dssp             HHHHHH----CCTTCEEEEESSCCTHHH----HHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTT
T ss_pred             HHHHHh----cCCCCEEEEcCCCChhHH----HHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCcCceEEEEeCCCCCC
Confidence            999998    789999999999998844    44566799999999875  57789999999999899999999999999


Q ss_pred             ccccC---HHHHHHHHHhcCCEEEEecCCcCCcc------c-ccCCC--CCccEEEecCcCcCCCCc--ceEEEEccccc
Q 017640          222 ASILP---IEEIVHWSHDVGAKVLVDACQSVPHM------V-VDVQG--LDADFLVASSHKMCGPTG--IGFLFGKSDLL  287 (368)
Q Consensus       222 G~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~------~-~~~~~--~~~d~~~~s~~K~~g~~G--~G~l~~~~~li  287 (368)
                      |.++|   +++|.++|++||+++|+|++|+....      + ..+..  .+.|+++.|+||.+|++|  +|+++++++++
T Consensus       177 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~  256 (388)
T 1j32_A          177 GMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLV  256 (388)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCHHHH
T ss_pred             CcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcccceEEEEeCHHHH
Confidence            99987   88999999999999999999985322      1 11211  357899999999999888  99999999887


Q ss_pred             ccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          288 SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       288 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      +.+.+...++.                     .+.+.....++..+++... ..++.++++..++.+++.+.|++.+|++
T Consensus       257 ~~l~~~~~~~~---------------------~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~g~~  314 (388)
T 1j32_A          257 KAATKIQGHST---------------------SNVCTFAQYGAIAAYENSQ-DCVQEMLAAFAERRRYMLDALNAMPGLE  314 (388)
T ss_dssp             HHHHHHHHTTT---------------------CSCCHHHHHHHHHHHHSCS-HHHHHHHHHHHHHHHHHHHHHHTCTTCB
T ss_pred             HHHHHHHhhcc---------------------cCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHHHHHHhhCCCCc
Confidence            77654432111                     1344445555555554221 1356788889999999999998876654

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=99.96  E-value=3.5e-28  Score=229.63  Aligned_cols=263  Identities=11%  Similarity=0.101  Sum_probs=203.5

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcC--CCCCCcEEEeCCHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN--ASDSGEIVFTKNATEAI  142 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~--~~~~~~v~~t~g~t~a~  142 (368)
                      +++++|..+..+ ++++.+.+++.+.+....       +.++....+..+++++.+++.+|  .++ ++|++|+|+++++
T Consensus        32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-------~~y~~~~~~~~~~l~~~l~~~~g~~~~~-~~v~~~~g~~~a~  103 (391)
T 4dq6_A           32 NDLLPMWVADMDFKAAPCIIDSLKNRLEQEI-------YGYTTRPDSYNESIVNWLYRRHNWKIKS-EWLIYSPGVIPAI  103 (391)
T ss_dssp             SCSEECCSSSCSSCCCHHHHHHHHHHHTTCC-------CCCBCCCHHHHHHHHHHHHHHHCCCCCG-GGEEEESCHHHHH
T ss_pred             CCceeccccCCCCCCCHHHHHHHHHHHhCCC-------CCCCCCCHHHHHHHHHHHHHHhCCCCcH-HHeEEcCChHHHH
Confidence            567899988776 678999999988875411       11111236677789999999999  444 4999999999999


Q ss_pred             HHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC--CC--CCCCHHHHHHhcccCceEEEEcccc
Q 017640          143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DD--ESPDLDKLKEMLSRKTKLVVIHHIS  218 (368)
Q Consensus       143 ~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~--~~--~~~d~~~l~~~l~~~~~~v~~~~~~  218 (368)
                      ..++.++    +++||+|++.+|+|++..    ..++..|++++.++.+  .+  +.+|+++|++++++ +++|++++++
T Consensus       104 ~~~~~~~----~~~gd~vl~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~v~i~~p~  174 (391)
T 4dq6_A          104 SLLINEL----TKANDKIMIQEPVYSPFN----SVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD-VKLFILCNPH  174 (391)
T ss_dssp             HHHHHHH----SCTTCEEEECSSCCTHHH----HHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT-EEEEEEESSB
T ss_pred             HHHHHHh----CCCCCEEEEcCCCCHHHH----HHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc-CCEEEEECCC
Confidence            9999998    889999999999999854    3455679999999987  23  45899999999988 9999999999


Q ss_pred             cccccccC---HHHHHHHHHhcCCEEEEecCCcCCc----ccccCCCC-----CccEEEecCcCcCCCCc--ceEEEEcc
Q 017640          219 NMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----MVVDVQGL-----DADFLVASSHKMCGPTG--IGFLFGKS  284 (368)
Q Consensus       219 n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~----~~~~~~~~-----~~d~~~~s~~K~~g~~G--~G~l~~~~  284 (368)
                      ||||.++|   +++|.++|++||+++|+|++|+...    ...++...     +.++++.|+||.+|++|  +|++++++
T Consensus       175 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~  254 (391)
T 4dq6_A          175 NPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPD  254 (391)
T ss_dssp             TTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCS
T ss_pred             CCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEEeCC
Confidence            99999977   7888999999999999999998532    11222222     34488999999888666  89999886


Q ss_pred             -cccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHh-
Q 017640          285 -DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQE-  362 (368)
Q Consensus       285 -~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~-  362 (368)
                       ++++.+......                    +..++++.....++..+++...+ .++.++++.+++.+++.+.|.+ 
T Consensus       255 ~~~~~~~~~~~~~--------------------~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~l~~~  313 (391)
T 4dq6_A          255 EKDYKLLDDAFTR--------------------IDIKRNNCFSLVATEASYNNGES-WLESFLEYLESNIDFAIKYINEN  313 (391)
T ss_dssp             HHHHHHHHHHHHH--------------------TTCCCCCHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh--------------------hcCCCCCHHHHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHHHhh
Confidence             777666543211                    12347788888888888775333 2678888999999999999987 


Q ss_pred             hcCC
Q 017640          363 RHNT  366 (368)
Q Consensus       363 ~~g~  366 (368)
                      ++|+
T Consensus       314 ~~~~  317 (391)
T 4dq6_A          314 MPKL  317 (391)
T ss_dssp             CTTS
T ss_pred             CCCC
Confidence            4564

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.96  E-value=1.4e-27  Score=221.12  Aligned_cols=251  Identities=17%  Similarity=0.137  Sum_probs=195.4

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL  144 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~  144 (368)
                      ++.|+|+.+.+. ++++.+.+++.+.......++           .....++|+++++++|++++ +|++|+|+++++..
T Consensus        16 ~~~i~l~~n~~~~~~~~~v~~a~~~~~~~~~~y~-----------~~~~~~lr~~la~~~~~~~~-~i~~t~G~~~~l~~   83 (337)
T 3p1t_A           16 AQAVCLAFNENPEAVEPRVQAAIAAAAARINRYP-----------FDAEPRVMRKLAEHFSCPED-NLMLVRGIDECFDR   83 (337)
T ss_dssp             CCCEECSSCCCCSCCCHHHHHHHHHHGGGTTSCC-----------TTHHHHHHHHHHHHHTSCGG-GEEEESHHHHHHHH
T ss_pred             CCceEeeCCCCCCCCCHHHHHHHHHhhhhhccCC-----------CCchHHHHHHHHHHhCcCHH-HEEEeCCHHHHHHH
Confidence            678999999766 688999999988765433222           13455899999999999764 99999999999999


Q ss_pred             HHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccc
Q 017640          145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI  224 (368)
Q Consensus       145 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~  224 (368)
                      ++.++      +||+|++.+|+|++.    ...++..|++++.++.++++.+|+++|+++  .+++++++++++||||.+
T Consensus        84 ~~~~~------~gd~vl~~~p~~~~~----~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~--~~~~~v~i~~p~nptG~~  151 (337)
T 3p1t_A           84 ISAEF------SSMRFVTAWPGFDGY----RARIAVSGLRHFEIGLTDDLLLDPNDLAQV--SRDDCVVLANPSNPTGQA  151 (337)
T ss_dssp             HHHHS------TTSEEEEESSSCSHH----HHHHTTSCCEEEEECBCTTSSBCHHHHTTC--CTTEEEEEESSCTTTCCC
T ss_pred             HHHhc------CCCeEEEeCCCcHHH----HHHHHHcCCEEEEecCCCCCCCCHHHHHhh--cCCCEEEEeCCCCCCCCC
Confidence            99864      899999999999884    445567799999999988889999999886  468999999999999999


Q ss_pred             cCHHHHHHHHHhcCCEEEEecCCcC--CcccccCCCCCccEEEecCcCcCCCCc--ceEEEEcccccccCCCcccCCcce
Q 017640          225 LPIEEIVHWSHDVGAKVLVDACQSV--PHMVVDVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMI  300 (368)
Q Consensus       225 ~~l~~i~~l~~~~g~~li~D~a~~~--~~~~~~~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~~~~~g~~~~  300 (368)
                      +|++++.++|+++++ +++|++|+.  +.........+.+++++|+||.+|++|  +|++++++++++.+....      
T Consensus       152 ~~~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~l~~~~------  224 (337)
T 3p1t_A          152 LSAGELDQLRQRAGK-LLIDETYVDYSSFRARGLAYGENELVFRSFSKSYGLAGLRLGALFGPSELIAAMKRKQ------  224 (337)
T ss_dssp             CCHHHHHHHHHHCSE-EEEECTTGGGSSCSSSCCCCBTTEEEEEESSSTTCCTTTCCEEEECCHHHHHHHHTTS------
T ss_pred             CCHHHHHHHHHhCCc-EEEECCChhhccccccccccCCCEEEEeeCchhccCcchheEEEEeCHHHHHHHHhhc------
Confidence            999999999999997 566999872  211222233467899999999998777  799999998887665432      


Q ss_pred             eecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          301 SDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                                       ..++++..++.++..+++....  .....++..++.+++.+.|.+. |++
T Consensus       225 -----------------~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~  271 (337)
T 3p1t_A          225 -----------------WFCNVGTLDLHALEAALDNDRA--REAHIAKTLAQRRRVADALRGL-GYR  271 (337)
T ss_dssp             -----------------CTTCSCHHHHHHHHHHHTCHHH--HHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             -----------------CCCCCCHHHHHHHHHHhCCHHH--HHHHHHHHHHHHHHHHHHHHHC-cCE
Confidence                             1236677777777777664322  4555666777788888888776 543

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=99.96  E-value=4.5e-28  Score=228.78  Aligned_cols=259  Identities=16%  Similarity=0.113  Sum_probs=196.8

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHH----cCCC-CCC-cEEEeCCH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAF----INAS-DSG-EIVFTKNA  138 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~----~~~~-~~~-~v~~t~g~  138 (368)
                      +++++|+.+... .+++.+.+++.+.+... ..    .+....+..    ++|+.++++    +|.+ .++ +|++|+|+
T Consensus        30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~----~y~~~~g~~----~l~~~la~~l~~~~g~~~~~~~~v~~~~g~  100 (386)
T 1u08_A           30 HQAINLSQGFPDFDGPRYLQERLAHHVAQG-AN----QYAPMTGVQ----ALREAIAQKTERLYGYQPDADSDITVTAGA  100 (386)
T ss_dssp             TTCEECCCSSCSSCCCHHHHHHHHHHHHTT-CC----SCCCTTCCH----HHHHHHHHHHHHHHSCCCCTTTTEEEESSH
T ss_pred             CCeEEecCCCCCCCCCHHHHHHHHHHHHhh-cc----CCCCCCCCH----HHHHHHHHHHHHHhCCCCCCCCCEEEcCCh
Confidence            457899998776 57889999998887641 01    111111123    455555555    5754 345 89999999


Q ss_pred             HHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC-CCCCCHHHHHHhcccCceEEEEccc
Q 017640          139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHHI  217 (368)
Q Consensus       139 t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~  217 (368)
                      ++++..++.++    +++||+|++.+|+|++..    ..++..|++++.++.++ ++.+|+++|++++++++++|+++++
T Consensus       101 ~~a~~~~~~~~----~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p  172 (386)
T 1u08_A          101 TEALYAAITAL----VRNGDEVICFDPSYDSYA----PAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTP  172 (386)
T ss_dssp             HHHHHHHHHHH----CCTTCEEEEEESCCTTHH----HHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESS
T ss_pred             HHHHHHHHHHh----CCCCCEEEEeCCCchhHH----HHHHHcCCEEEEeecCcccCcCCHHHHHHhhcccCEEEEEeCC
Confidence            99999999998    789999999999999854    34566799999999875 5788999999999889999999999


Q ss_pred             ccccccccC---HHHHHHHHHhcCCEEEEecCCcCCc------ccc-cCC-CCCccEEEecCcCcCCCCc--ceEEEEcc
Q 017640          218 SNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH------MVV-DVQ-GLDADFLVASSHKMCGPTG--IGFLFGKS  284 (368)
Q Consensus       218 ~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~------~~~-~~~-~~~~d~~~~s~~K~~g~~G--~G~l~~~~  284 (368)
                      +||||.++|   +++|.++|++||+++|+|++|+...      .++ .+. ..+.|++++|+||.+|++|  +|++++++
T Consensus       173 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~  252 (386)
T 1u08_A          173 HNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPA  252 (386)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCH
T ss_pred             CCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEEEEcCH
Confidence            999999998   6899999999999999999998521      122 221 2468999999999999888  99999999


Q ss_pred             cccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          285 DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       285 ~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      ++++.+++....                     ...+.+.....++..+++.. ...++.++++..++.+++.+.|.+.
T Consensus       253 ~~~~~l~~~~~~---------------------~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~  309 (386)
T 1u08_A          253 PISAEIRKVHQY---------------------LTFSVNTPAQLALADMLRAE-PEHYLALPDFYRQKRDILVNALNES  309 (386)
T ss_dssp             HHHHHHHHHHHH---------------------HTSSCCHHHHHHHHHHHHHC-THHHHTHHHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHh---------------------hccCCChHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            888766543210                     11245666666777777654 2246778888999999999988765

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=99.96  E-value=3.5e-28  Score=229.56  Aligned_cols=266  Identities=11%  Similarity=0.056  Sum_probs=200.8

Q ss_pred             CCCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC-CCCcEEEeCCHHHHH
Q 017640           65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-DSGEIVFTKNATEAI  142 (368)
Q Consensus        65 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~~v~~t~g~t~a~  142 (368)
                      ++++++|..+... ++++.+.+++.+.+.... .      .++....+..+++++.+++.+|.+ .+++|++|+|+++++
T Consensus        26 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~-~------~y~~~~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~   98 (391)
T 3dzz_A           26 KEKELPMWIAEMDFKIAPEIMASMEEKLKVAA-F------GYESVPAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAI   98 (391)
T ss_dssp             CTTCEECCSSCCSSCCCHHHHHHHHHHHTTCC-C------CCBCCCHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHH
T ss_pred             CCCceeccccCCCCCCCHHHHHHHHHHHhcCc-C------CCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHH
Confidence            3578889888766 678999999988876421 0      011113566677888888888843 224999999999999


Q ss_pred             HHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC-C--CCCCHHHHHHhcc-cCceEEEEcccc
Q 017640          143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-D--ESPDLDKLKEMLS-RKTKLVVIHHIS  218 (368)
Q Consensus       143 ~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~--~~~d~~~l~~~l~-~~~~~v~~~~~~  218 (368)
                      ..++.++    +++||+|++.+++|++..    ..++..|++++.++.++ +  +.+|+++|+++++ +++++|++++++
T Consensus        99 ~~~~~~l----~~~gd~vl~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~  170 (391)
T 3dzz_A           99 SAMVRQF----TSPGDQILVQEPVYNMFY----SVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPH  170 (391)
T ss_dssp             HHHHHHH----SCTTCEEEECSSCCHHHH----HHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSB
T ss_pred             HHHHHHh----CCCCCeEEECCCCcHHHH----HHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCC
Confidence            9999998    889999999999998844    44566799999999852 2  3489999999998 689999999999


Q ss_pred             cccccccC---HHHHHHHHHhcCCEEEEecCCcCCc----ccccCCCCC---cc--EEEecCcCcCCCCc--ceEEEEc-
Q 017640          219 NMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----MVVDVQGLD---AD--FLVASSHKMCGPTG--IGFLFGK-  283 (368)
Q Consensus       219 n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~----~~~~~~~~~---~d--~~~~s~~K~~g~~G--~G~l~~~-  283 (368)
                      ||||.++|   +++|.++|++||+++|+|++|+...    ...++....   .|  +++.|+||.+|++|  +|+++++ 
T Consensus       171 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~  250 (391)
T 3dzz_A          171 NPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPN  250 (391)
T ss_dssp             TTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCS
T ss_pred             CCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEECC
Confidence            99999966   8899999999999999999998432    122222222   45  99999999888666  9999997 


Q ss_pred             ccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHh-
Q 017640          284 SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQE-  362 (368)
Q Consensus       284 ~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~-  362 (368)
                      +++++.+.....                    .+...+++.....++..+++.... .++.++++..++.+++.+.|.+ 
T Consensus       251 ~~~~~~~~~~~~--------------------~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~l~~~  309 (391)
T 3dzz_A          251 PDLRARAEESFF--------------------LAGIGEPNLLAIPAAIAAYEEGHD-WLRELKQVLRDNFAYAREFLAKE  309 (391)
T ss_dssp             HHHHHHHHHHHH--------------------HHTCSSCCTTHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH--------------------hhccCCCCHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhh
Confidence            777776653321                    011225666677777777765333 3678889999999999999988 


Q ss_pred             hcCC
Q 017640          363 RHNT  366 (368)
Q Consensus       363 ~~g~  366 (368)
                      ++|+
T Consensus       310 ~~~~  313 (391)
T 3dzz_A          310 VPEV  313 (391)
T ss_dssp             CTTS
T ss_pred             CCCc
Confidence            5664

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=99.96  E-value=8.5e-28  Score=230.55  Aligned_cols=273  Identities=11%  Similarity=0.039  Sum_probs=200.9

Q ss_pred             CCCeEEeccCCCC-CCcHHHHHHHHHHHHHh--hccCCCCcchhhHHHHHHHHHHHHHHHHHcC------CCCCCcEEEe
Q 017640           65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAY--NSNVHRGIHFLSAKATDEYELARKKVAAFIN------ASDSGEIVFT  135 (368)
Q Consensus        65 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------~~~~~~v~~t  135 (368)
                      ++++++|+.+.+. ++++.+.+++.+.+...  ..++.          .....++|+.++++++      +++ ++|++|
T Consensus        43 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~----------~~g~~~lr~~la~~~~~~~g~~~~~-~~i~~t  111 (437)
T 3g0t_A           43 GTKFCRMEMGVPGLPAPQIGIETEIQKLREGVASIYPN----------LDGLPELKQEASRFAKLFVNIDIPA-RACVPT  111 (437)
T ss_dssp             TCCCEECCCCSCCSCCCHHHHHHHHHHHHHTGGGSCCC----------TTCCHHHHHHHHHHHHHHHCCCCCG-GGEEEE
T ss_pred             CCCEEeccCcCCCCCCCHHHHHHHHHHHhCCcCcCCCC----------CCChHHHHHHHHHHHHHhhCCCCCc-ccEEEe
Confidence            3678999998877 57899999999888741  11111          1112367777777776      334 499999


Q ss_pred             CCHHHHHHHHHHHccCCCC--CCCC--EEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC-CCCCCHHHHHHhc-ccCc
Q 017640          136 KNATEAINLVAYSWGLSNL--KSGD--EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEML-SRKT  209 (368)
Q Consensus       136 ~g~t~a~~~~~~~~~~~~~--~~gd--~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~l-~~~~  209 (368)
                      +|+++++.+++.++    .  ++||  +|++.+|+|++..    ..++..|++++.+++++ ++.+|+++|++++ ++++
T Consensus       112 ~g~t~al~~~~~~l----~~~~~gd~~~Vl~~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~  183 (437)
T 3g0t_A          112 VGSMQGCFVSFLVA----NRTHKNREYGTLFIDPGFNLNK----LQCRILGQKFESFDLFEYRGEKLREKLESYLQTGQF  183 (437)
T ss_dssp             SHHHHHHHHHHHHH----TTSCTTCSCCEEEEESCCHHHH----HHHHHHTCCCEEEEGGGGCTTHHHHHHHHHHTTTCC
T ss_pred             CCHHHHHHHHHHHH----hcCCCCCccEEEEeCCCcHhHH----HHHHHcCCEEEEEeecCCCCccCHHHHHHHHhcCCc
Confidence            99999999999998    6  8999  9999999888844    44556699999999864 4578999999999 7789


Q ss_pred             eEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCc----ccc--------cCCC-CCccEEEecCcCcCC
Q 017640          210 KLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----MVV--------DVQG-LDADFLVASSHKMCG  273 (368)
Q Consensus       210 ~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~----~~~--------~~~~-~~~d~~~~s~~K~~g  273 (368)
                      ++|++++++||||.++|   +++|+++|++||+++|+|++|+...    .++        ++.. .+.+++++|+||.+|
T Consensus       184 ~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~  263 (437)
T 3g0t_A          184 CSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFS  263 (437)
T ss_dssp             CEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTS
T ss_pred             eEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCC
Confidence            99999999999999998   6778999999999999999998422    121        2322 567799999999999


Q ss_pred             CCc--ceEEEEcccccc-cCCCccc---CCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh--CHHHH
Q 017640          274 PTG--IGFLFGKSDLLS-AMPPFLG---GGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI--GMQKI  345 (368)
Q Consensus       274 ~~G--~G~l~~~~~li~-~l~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~--g~~~i  345 (368)
                      ++|  +|++++++++++ .+.....   ++... ....      ....+....+.+.....++..+++.....  .++.+
T Consensus       264 ~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~  336 (437)
T 3g0t_A          264 YAGQRIGVLMISGKLYEREYPDLEESFGRLRFG-EALS------SSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDS  336 (437)
T ss_dssp             CGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHH-HHHH------TTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHH
T ss_pred             CccceeEEEEECHHHhhhhhhcccccccccchh-HHHH------HHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHH
Confidence            777  999999998887 6211110   00000 0000      00001113367888888888888765432  17889


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 017640          346 HAYEVKWIICSIIVIQER  363 (368)
Q Consensus       346 ~~~~~~l~~~l~~~l~~~  363 (368)
                      +++..++.+++.+.|.++
T Consensus       337 ~~~~~~~~~~l~~~L~~~  354 (437)
T 3g0t_A          337 VIEYGRKARIMKKMFLDN  354 (437)
T ss_dssp             HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHc
Confidence            999999999999999876

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=99.96  E-value=7.7e-28  Score=226.21  Aligned_cols=257  Identities=14%  Similarity=0.085  Sum_probs=196.3

Q ss_pred             CCCeEEeccCCCC-CCcHHHHHHHHHHHHH-hhccCCCCcchhhHHHHHHHHHHHHHHHHHcC------CCCCCcEEEeC
Q 017640           65 SKKLVYLDNAATS-QKPIAVLKALQNYYEA-YNSNVHRGIHFLSAKATDEYELARKKVAAFIN------ASDSGEIVFTK  136 (368)
Q Consensus        65 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------~~~~~~v~~t~  136 (368)
                      +++++.|..+... +.++.+.+++.+.+.. ...++.     .+       .++|+.++++++      .++ ++|++|+
T Consensus        22 g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~-----~~-------~~lr~~la~~~~~~~~~~~~~-~~i~~t~   88 (377)
T 3fdb_A           22 GQGVLPLWVAESDFSTCPAVLQAITDAVQREAFGYQP-----DG-------SLLSQATAEFYADRYGYQARP-EWIFPIP   88 (377)
T ss_dssp             CTTSEECCSSCCCSCCCHHHHHHHHHHHHTTCCSSCC-----SS-------CCHHHHHHHHHHHHHCCCCCG-GGEEEES
T ss_pred             CCCeeeecccCCCCCCCHHHHHHHHHHHHcCCCCCCC-----CC-------HHHHHHHHHHHHHHhCCCCCH-HHEEEeC
Confidence            3678899888766 6789999999988875 211111     00       256777777766      444 4999999


Q ss_pred             CHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcc
Q 017640          137 NATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHH  216 (368)
Q Consensus       137 g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~  216 (368)
                      |+++++..++.++    +++||+|++..|+|++..    ..++..|++++.++.+++  +|+++|+++++++++++++++
T Consensus        89 g~~~a~~~~~~~~----~~~gd~vl~~~~~~~~~~----~~~~~~g~~~~~~~~~~~--~d~~~l~~~l~~~~~~v~i~~  158 (377)
T 3fdb_A           89 DVVRGLYIAIDHF----TPAQSKVIVPTPAYPPFF----HLLSATQREGIFIDATGG--INLHDVEKGFQAGARSILLCN  158 (377)
T ss_dssp             CHHHHHHHHHHHH----SCTTCCEEEEESCCTHHH----HHHHHHTCCEEEEECTTS--CCHHHHHHHHHTTCCEEEEES
T ss_pred             ChHHHHHHHHHHh----cCCCCEEEEcCCCcHhHH----HHHHHcCCEEEEccCCCC--CCHHHHHHHhccCCCEEEEeC
Confidence            9999999999998    889999999999999854    345556999999999876  899999999998899999999


Q ss_pred             cccccccccC---HHHHHHHHHhcCCEEEEecCCcCCc-----ccccCC---CCCccEEEecCcCcCCCCc--ceEEEE-
Q 017640          217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH-----MVVDVQ---GLDADFLVASSHKMCGPTG--IGFLFG-  282 (368)
Q Consensus       217 ~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~-----~~~~~~---~~~~d~~~~s~~K~~g~~G--~G~l~~-  282 (368)
                      ++||||.++|   +++|.++|++||+++|+|++|+...     ...++.   ..+.++++.|+||.+|++|  +|++++ 
T Consensus       159 p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~  238 (377)
T 3fdb_A          159 PYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFS  238 (377)
T ss_dssp             SBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGCCEEEECC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhccCcchhheEEEeC
Confidence            9999999998   6677778999999999999998521     111222   2345689999999998777  898776 


Q ss_pred             cccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHh
Q 017640          283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       283 ~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~  362 (368)
                      ++++++.+.....                     ...++++.....++..+++...+ .++.++++..++.+++.+.|++
T Consensus       239 ~~~~~~~~~~~~~---------------------~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~  296 (377)
T 3fdb_A          239 NPSDAEHWQQLSP---------------------VIKDGASTLGLIAAEAAYRYGTD-FLNQEVAYLKNNHDFLLHEIPK  296 (377)
T ss_dssp             SHHHHHHHHHSCH---------------------HHHCCCCHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH---------------------hhcCCCCHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence            6677665543221                     11236777777777777775332 3678889999999999999987


Q ss_pred             -hcCC
Q 017640          363 -RHNT  366 (368)
Q Consensus       363 -~~g~  366 (368)
                       ++|+
T Consensus       297 ~~~~~  301 (377)
T 3fdb_A          297 RIPGA  301 (377)
T ss_dssp             HSTTC
T ss_pred             hCCCc
Confidence             5554

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.96  E-value=8.4e-29  Score=239.07  Aligned_cols=277  Identities=9%  Similarity=0.032  Sum_probs=207.4

Q ss_pred             hhhcCCCCcccccccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCC-C--------cchhhHHHHHHHHHHHHH
Q 017640           49 HITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHR-G--------IHFLSAKATDEYELARKK  119 (368)
Q Consensus        49 ~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~r~~  119 (368)
                      ..++++|+.+       +..+|||+++.++.++.|.+++.+.....+.++.. .        ....+....+..++++++
T Consensus        69 ~~~~~~~~~~-------~~~~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (456)
T 2z67_A           69 KLFLKFLSMM-------DTDKDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILES  141 (456)
T ss_dssp             HHHHHHHHTT-------BGGGCTTCEECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCTTBHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhc-------cccccccccccccccccccccccCccccccCCCccHHHHHHhhCcccccCcHHHHHHHHHHHH
Confidence            4467778776       45689999999999999998877643111111100 0        011222466788899999


Q ss_pred             HHHHcCCCCCCcEEEeCCHH-HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeC---CCCCC
Q 017640          120 VAAFINASDSGEIVFTKNAT-EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL---NDDES  195 (368)
Q Consensus       120 la~~~~~~~~~~v~~t~g~t-~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~---~~~~~  195 (368)
                      +++++|+++.  +++|+|+| .++..++.++..  ..+|+.|++++++|++.    ...++..|++++.++.   ++++.
T Consensus       142 la~~~g~~~~--~~~t~g~te~a~~~al~~~~~--~~~~~~vi~~~~~h~s~----~~~~~~~G~~~~~v~~~~~~~~~~  213 (456)
T 2z67_A          142 FFKQLGLNVH--AIATPISTGMSISLCLSAARK--KYGSNVVIYPYASHKSP----IKAVSFVGMNMRLVETVLDGDRVY  213 (456)
T ss_dssp             HHHHTTCCCE--EEEESSCHHHHHHHHHHHHHH--HHCCCEEEEECCCCHHH----HHHHHHTTCEEEEECCEEETTEEE
T ss_pred             HHHHcCCCCC--EEEeCcHHHHHHHHHHHHHHH--hcCCCEEEEECCCcHHH----HHHHHHcCCCceEEEEeccCCCCC
Confidence            9999999753  99999999 456556655411  12678899999999984    3445667999999987   56689


Q ss_pred             CCHHHHHHhc-c----cCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcc---cccCCCC--CccEEE
Q 017640          196 PDLDKLKEML-S----RKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM---VVDVQGL--DADFLV  265 (368)
Q Consensus       196 ~d~~~l~~~l-~----~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~---~~~~~~~--~~d~~~  265 (368)
                      +|+++|++++ +    .++.+|++++++|+||.+.|+++|.++|+++|+++++|++|+....   +.+....  ++|+++
T Consensus       214 ~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~~~D~~~  293 (456)
T 2z67_A          214 VPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVV  293 (456)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEE
T ss_pred             cCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCCCCCEEE
Confidence            9999999999 4    3677888999999999999999999999999999999999875433   3333222  799999


Q ss_pred             ecCcCc-CCCCcceEEEEc-ccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHH
Q 017640          266 ASSHKM-CGPTGIGFLFGK-SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQ  343 (368)
Q Consensus       266 ~s~~K~-~g~~G~G~l~~~-~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~  343 (368)
                      +|+||+ ++|.|+|+++++ +++++.+.+...|+.                        +....+++..++..+...+++
T Consensus       294 ~s~hK~~~~p~g~G~l~~~~~~~~~~l~~~~~g~~------------------------~~~~~~~~~aal~~l~~~~~~  349 (456)
T 2z67_A          294 SSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRA------------------------SATPVVNTLVSLLSMGSKNYL  349 (456)
T ss_dssp             EEHHHHHCCCSSCEEEEESCHHHHHHHHTTSCSCB------------------------CSHHHHHHHHHHHHHHHHHHH
T ss_pred             EcCCCCcCCCCCeEEEEEcCHHHHhhcCcCCCCCC------------------------CCCHHHHHHHHHHHHHHHHHH
Confidence            999995 678899999995 567766654443321                        112356677777777777899


Q ss_pred             HHHHHHHHHHHHHHHHHHhhc
Q 017640          344 KIHAYEVKWIICSIIVIQERH  364 (368)
Q Consensus       344 ~i~~~~~~l~~~l~~~l~~~~  364 (368)
                      .+.++..++++++.+.|.+++
T Consensus       350 ~~~~~~~~~~~~l~~~L~~~~  370 (456)
T 2z67_A          350 ELVKNQKNSKKLLDELLNDLS  370 (456)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999886

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=99.96  E-value=2.8e-28  Score=231.59  Aligned_cols=267  Identities=14%  Similarity=0.106  Sum_probs=201.1

Q ss_pred             CeEEeccCCCC--CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC--CCCcEEEeCCHHHHH
Q 017640           67 KLVYLDNAATS--QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS--DSGEIVFTKNATEAI  142 (368)
Q Consensus        67 ~~i~l~~~~~~--~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~--~~~~v~~t~g~t~a~  142 (368)
                      .+++|..+.+.  ++++.+++++.+.+.......    +....+..+..+++++.+++++|.+  ++++|++|+|+++++
T Consensus        40 ~~id~~~g~~~~~~~~~~v~~a~~~~~~~~~~~~----y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~  115 (407)
T 3nra_A           40 RPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQA----YTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGAL  115 (407)
T ss_dssp             CCEETTSCCTTTSCCCTTHHHHHHHHHHHTHHHH----SCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred             ceeeecCcCCCCCCCcHHHHHHHHHHHhcCCCCC----cCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHH
Confidence            57888887655  578899999998887532111    1111223567778888999999985  224899999999999


Q ss_pred             HHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeC------CCCCCCCHHHHHHhcccCceEEEEcc
Q 017640          143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL------NDDESPDLDKLKEMLSRKTKLVVIHH  216 (368)
Q Consensus       143 ~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~------~~~~~~d~~~l~~~l~~~~~~v~~~~  216 (368)
                      ..++.++    +++||+|++..|+|++.    ...++..|++++.++.      +.++.+|+++|++++++++++|++++
T Consensus       116 ~~~~~~l----~~~gd~vl~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~  187 (407)
T 3nra_A          116 FLAVAAT----VARGDKVAIVQPDYFAN----RKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSN  187 (407)
T ss_dssp             HHHHHTT----CCTTCEEEEEESCCTHH----HHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEES
T ss_pred             HHHHHHh----CCCCCEEEEcCCcccch----HHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEEEEcC
Confidence            9999988    88999999999999874    4455667999999998      36688899999999988999999999


Q ss_pred             cccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc------cc-cC--CCCCccEEEecCcCcCCCCc--ceEEEE
Q 017640          217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM------VV-DV--QGLDADFLVASSHKMCGPTG--IGFLFG  282 (368)
Q Consensus       217 ~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~------~~-~~--~~~~~d~~~~s~~K~~g~~G--~G~l~~  282 (368)
                      ++||||.++|   +++|.++|++||+++|+|++|+.+..      ++ .+  ...+.+++++|+||.+|++|  +|++++
T Consensus       188 p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~  267 (407)
T 3nra_A          188 PNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFG  267 (407)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEE
T ss_pred             CCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEc
Confidence            9999999999   89999999999999999999985321      11 11  22456799999999999777  899999


Q ss_pred             cccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHh
Q 017640          283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       283 ~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~  362 (368)
                      ++++++.+......+                     ..+.+.....++..+++... ..++...++.+++.+++.+.|.+
T Consensus       268 ~~~~~~~l~~~~~~~---------------------~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~  325 (407)
T 3nra_A          268 SRAIIARMEKLQAIV---------------------SLRAAGYSQAVLRGWFDEAP-GWMEDRIARHQAIRDELLHVLRG  325 (407)
T ss_dssp             CHHHHHHHHHHHHHH---------------------TSSSCHHHHGGGGGTTCCCT-THHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHhhh---------------------ccCCChHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhc
Confidence            998887765433211                     11344444444444443111 12567778888899999999988


Q ss_pred             hcCCC
Q 017640          363 RHNTT  367 (368)
Q Consensus       363 ~~g~t  367 (368)
                      +++++
T Consensus       326 ~~~~~  330 (407)
T 3nra_A          326 CEGVF  330 (407)
T ss_dssp             STTCB
T ss_pred             CCCce
Confidence            76654

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.96  E-value=6.4e-27  Score=229.34  Aligned_cols=265  Identities=19%  Similarity=0.134  Sum_probs=207.1

Q ss_pred             CcHHHHHHHHHHHHHhh-ccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCC-CCcE--EEeCCHHHHHHHHHHHccCCCC
Q 017640           79 KPIAVLKALQNYYEAYN-SNVHRGIHFLSAKATDEYELARKKVAAFINASD-SGEI--VFTKNATEAINLVAYSWGLSNL  154 (368)
Q Consensus        79 ~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~-~~~v--~~t~g~t~a~~~~~~~~~~~~~  154 (368)
                      ..+.+.+.+.+.+.... .++.  .+...+...+...++++++++++|.+. ++++  ++|+|+++|+..++.++    .
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~----~  181 (514)
T 3mad_A          108 GDEHHIAFLNEVYALQSQSNPL--HPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTY----R  181 (514)
T ss_dssp             CCHHHHHHHHHHHHHHTTCCTT--CTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHH----H
T ss_pred             CCCCHHHHHHHHHHHHhhcCCc--ccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHH----H
Confidence            34555566655554422 2222  222334456777789999999999873 1266  99999999999999988    4


Q ss_pred             CCC--------CEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccC
Q 017640          155 KSG--------DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILP  226 (368)
Q Consensus       155 ~~g--------d~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~  226 (368)
                      ++|        |+|+++.+.|++.    ...++..|++++.|++++++.+|+++|++++++++++|++++++||||.+.|
T Consensus       182 ~~g~~~~g~~~d~Vi~~~~~~~~~----~~~~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~  257 (514)
T 3mad_A          182 DWARATKGITAPEAVVPVSAHAAF----DKAAQYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDP  257 (514)
T ss_dssp             HHHHHHHCCSSCEEEEETTSCTHH----HHHHHHHTCEEEEECBCTTSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCC
T ss_pred             HHhhhhcCCCCCeEEEeCccchHH----HHHHHHcCCeeEEeeeCCCCCCCHHHHHHHhccCCEEEEEeCCCCCCccccC
Confidence            444        8999999999984    4455566999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEEecCCcCCcc-----------cccCCCCCccEEEecCcCc-CCCCcceEEEEcccccccCCCcc
Q 017640          227 IEEIVHWSHDVGAKVLVDACQSVPHM-----------VVDVQGLDADFLVASSHKM-CGPTGIGFLFGKSDLLSAMPPFL  294 (368)
Q Consensus       227 l~~i~~l~~~~g~~li~D~a~~~~~~-----------~~~~~~~~~d~~~~s~~K~-~g~~G~G~l~~~~~li~~l~~~~  294 (368)
                      +++|.++|++||+++|+|++|+.+..           +++....+.|++++|+||+ +++.|+|+++++++.+.......
T Consensus       258 l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~  337 (514)
T 3mad_A          258 IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFI  337 (514)
T ss_dssp             HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEE
T ss_pred             HHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEEeCHHHhcccccc
Confidence            99999999999999999999985433           3444556899999999996 77888999999987665433221


Q ss_pred             c----CCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          295 G----GGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       295 ~----g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      .    ++..              ......|+++....+++.++++.+...+++.+.++..++++++.+.|.+++|++
T Consensus       338 ~~~~~~~~~--------------~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  400 (514)
T 3mad_A          338 AADWPGGLY--------------FSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLK  400 (514)
T ss_dssp             ESSCTTCSE--------------EESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCE
T ss_pred             ccccCCCcc--------------cCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeE
Confidence            1    1110              011235688888889999999999888899999999999999999999877753

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.96  E-value=4.4e-28  Score=226.03  Aligned_cols=261  Identities=14%  Similarity=0.098  Sum_probs=198.3

Q ss_pred             CCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHH
Q 017640           66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV  145 (368)
Q Consensus        66 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~  145 (368)
                      +.++||+++..+++++.+.+++.+.+..+.         .+.+..+..+++++.+++++|.+++ +|++|+|+++|+..+
T Consensus        13 p~~i~l~~~~~~~~~~~v~~a~~~~~~~~~---------~~~g~~~~~~~~~~~l~~~~g~~~~-~v~~~~g~t~a~~~~   82 (359)
T 1svv_A           13 PKPYSFVNDYSVGMHPKILDLMARDNMTQH---------AGYGQDSHCAKAARLIGELLERPDA-DVHFISGGTQTNLIA   82 (359)
T ss_dssp             --CEECSCSCSSCCCHHHHHHHHHHTTCCC---------CSTTCSHHHHHHHHHHHHHHTCTTS-EEEEESCHHHHHHHH
T ss_pred             CeeEEecCCCcCCCCHHHHHHHHHHHhhcc---------ccccccHHHHHHHHHHHHHhCCCCc-cEEEeCCchHHHHHH
Confidence            567999999888999999999988875321         1112256677899999999997654 899999999999999


Q ss_pred             HHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccC-------ceEEEEcccc
Q 017640          146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRK-------TKLVVIHHIS  218 (368)
Q Consensus       146 ~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~-------~~~v~~~~~~  218 (368)
                      +.++    .++||+|++.+++|++....  ..++..|.+++.++.+ ++.+|+++|+++++++       +++|+++++ 
T Consensus        83 ~~~~----~~~gd~vl~~~~~~~~~~~~--~~~~~~g~~~~~v~~~-~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-  154 (359)
T 1svv_A           83 CSLA----LRPWEAVIATQLGHISTHET--GAIEATGHKVVTAPCP-DGKLRVADIESALHENRSEHMVIPKLVYISNT-  154 (359)
T ss_dssp             HHHH----CCTTEEEEEETTSHHHHSST--THHHHTTCCEEEECCT-TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-
T ss_pred             HHHH----hCCCCEEEEcccchHHHHHH--HHHhcCCCeeEEEeCC-CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-
Confidence            9998    78999999999999886542  1345679999999985 7889999999999776       899999999 


Q ss_pred             cccccccC---HHHHHHHHHhcCCEEEEecCC---cCCcccccCCC----CCccEEEecCcCcCCCCcceEEEEcccccc
Q 017640          219 NMLASILP---IEEIVHWSHDVGAKVLVDACQ---SVPHMVVDVQG----LDADFLVASSHKMCGPTGIGFLFGKSDLLS  288 (368)
Q Consensus       219 n~tG~~~~---l~~i~~l~~~~g~~li~D~a~---~~~~~~~~~~~----~~~d~~~~s~~K~~g~~G~G~l~~~~~li~  288 (368)
                      ||||.++|   +++|.++|++||+++|+|++|   +.+..+.+...    ...|++++|++|+.++.|+|++++++++++
T Consensus       155 ~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g~~~~~g~l~~~~~~~~  234 (359)
T 1svv_A          155 TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKP  234 (359)
T ss_dssp             CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSGGGCT
T ss_pred             CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccCCCCCceEEEEEcccHHH
Confidence            79999999   889999999999999999999   54554443322    357899999999878888999999999887


Q ss_pred             cCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          289 AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       289 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      .+++....++.                .+   ..+.....++.   ..+.+.+.+.+.++..++.+++.+.| +.+|++
T Consensus       235 ~~~~~~~~~~~----------------~~---~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~  290 (359)
T 1svv_A          235 NARHLIKQRGA----------------LM---AKGWLLGIQFE---VLMKDNLFFELGAHSNKMAAILKAGL-EACGIR  290 (359)
T ss_dssp             THHHHHHHTTC----------------CC---TTTHHHHHHHH---HHTSTTHHHHHHHHHHHHHHHHHHHH-HHTTCC
T ss_pred             HHHHHHhcCCc----------------cc---ccchhhHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHHh-ccCCeE
Confidence            66543211110                00   11222222222   23333346788899999999999999 666654

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=99.96  E-value=1.7e-27  Score=225.83  Aligned_cols=261  Identities=15%  Similarity=0.171  Sum_probs=201.1

Q ss_pred             CCeEEeccCCC-CC-CcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHH
Q 017640           66 KKLVYLDNAAT-SQ-KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN  143 (368)
Q Consensus        66 ~~~i~l~~~~~-~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~  143 (368)
                      ++++.|+.+.+ +. +++.+.+++.+.+.... ... ..+....+..+..+++++.+++++|.+   ++++|+|+++|+.
T Consensus        43 ~~~idl~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~-~~~~~~~g~~~~~~~l~~~la~~~g~~---~v~~~~ggt~a~~  117 (398)
T 3a2b_A           43 RRVLMFGSNSYLGLTTDTRIIKAAQDALEKYG-TGC-AGSRFLNGTLDIHVELEEKLSAYVGKE---AAILFSTGFQSNL  117 (398)
T ss_dssp             EEEEECSCSCTTCGGGCHHHHHHHHHHHHHHC-SCC-CSBTTTTCCCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHH
T ss_pred             ceEEEeecccccCCCCCHHHHHHHHHHHHHcC-CCC-CCcCcccCCcHHHHHHHHHHHHHhCCC---cEEEECCHHHHHH
Confidence            55777887766 53 78999999998887642 111 111111223466778999999999973   8999999999999


Q ss_pred             HHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc----CceEEEEccccc
Q 017640          144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR----KTKLVVIHHISN  219 (368)
Q Consensus       144 ~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~----~~~~v~~~~~~n  219 (368)
                      .++.++    +++||.|++.+|.|++...    .++..|++++.++.     +|+++|++++++    ++++|++++++|
T Consensus       118 ~~~~~~----~~~gd~V~~~~p~~~~~~~----~~~~~g~~~~~v~~-----~d~~~l~~~l~~~~~~~~~~v~~~~~~n  184 (398)
T 3a2b_A          118 GPLSCL----MGRNDYILLDERDHASIID----GSRLSFSKVIKYGH-----NNMEDLRAKLSRLPEDSAKLICTDGIFS  184 (398)
T ss_dssp             HHHHHS----SCTTCEEEEETTCCHHHHH----HHHHSSSEEEEECT-----TCHHHHHHHHHTSCSSSCEEEEEESBCT
T ss_pred             HHHHHH----hCCCCEEEECCccCHHHHH----HHHHcCCceEEeCC-----CCHHHHHHHHHhhccCCceEEEEeCCCC
Confidence            999998    8899999999999988543    45567999999987     389999999876    789999999999


Q ss_pred             ccccccCHHHHHHHHHhcCCEEEEecCCcCCcc---cccC-C--C--CCccEEEecCcCcCCCCcceEEEEcccccccCC
Q 017640          220 MLASILPIEEIVHWSHDVGAKVLVDACQSVPHM---VVDV-Q--G--LDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP  291 (368)
Q Consensus       220 ~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~---~~~~-~--~--~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~  291 (368)
                      |||.+.|+++|.++|++||+++|+|++|+.+..   ...+ .  .  .++|++++|+||.+|++| |++++++++++.+.
T Consensus       185 ptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G-G~~~~~~~~~~~l~  263 (398)
T 3a2b_A          185 MEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLASLG-GFVAGDADVIDFLK  263 (398)
T ss_dssp             TTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC-EEEEECHHHHHHHH
T ss_pred             CCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecccccccCCC-cEEEeCHHHHHHHH
Confidence            999999999999999999999999999986643   1111 1  1  126999999999999888 99999998887665


Q ss_pred             CcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       292 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      +....                   ....++++..+.+++..+++.++.  .+.++++..++.+++.+.|.+. |++
T Consensus       264 ~~~~~-------------------~~~~~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~  317 (398)
T 3a2b_A          264 HNARS-------------------VMFSASMTPASVASTLKALEIIQN--EPEHIEKLWKNTDYAKAQLLDH-GFD  317 (398)
T ss_dssp             HHCHH-------------------HHSSBCCCHHHHHHHHHHHHHHHH--CTHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             Hhccc-------------------ceecCCCCHHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHHHHHHHhc-CCC
Confidence            42110                   011235666666667778877643  5678888999999999999876 543

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.96  E-value=4e-27  Score=230.74  Aligned_cols=282  Identities=15%  Similarity=0.124  Sum_probs=202.7

Q ss_pred             EEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHH
Q 017640           69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS  148 (368)
Q Consensus        69 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~  148 (368)
                      .|+++...+..+..+...+   +.. ..+++...+..++...+...++++++++++|.+. +++++|+|+|+|+.+++.+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~---l~~-~~n~~~~~~~~s~~~~~le~~~~~~la~l~g~~~-~~~~~t~ggtea~~~al~~  184 (515)
T 2jis_A          110 RFFNQLFSGLDPHALAGRI---ITE-SLNTSQYTYEIAPVFVLMEEEVLRKLRALVGWSS-GDGIFCPGGSISNMYAVNL  184 (515)
T ss_dssp             TEESSSCCCCCHHHHHHHH---HHH-HHCCCTTCTTTCHHHHHHHHHHHHHHHHHHTCSS-CEEEEESSHHHHHHHHHHH
T ss_pred             CeEEEeeCCCCHHHHHHHH---HHH-HhccCCCchhhchHHHHHHHHHHHHHHHHhCCCC-CCeEEcCCcHHHHHHHHHH
Confidence            5899888777777776633   322 2344444455566778888999999999999985 4899999999999998887


Q ss_pred             ccCCC---CC-CCC------EEEEcCCCCcccHHHHHHHHHHcCC---EEEEEeCCCCCCCCHHHHHHhccc------Cc
Q 017640          149 WGLSN---LK-SGD------EVILTVAEHHSAIVPWQLVAQKTGA---NLKFLNLNDDESPDLDKLKEMLSR------KT  209 (368)
Q Consensus       149 ~~~~~---~~-~gd------~vl~~~~~~~s~~~~~~~~~~~~g~---~v~~v~~~~~~~~d~~~l~~~l~~------~~  209 (368)
                      ++...   ++ +|+      +|++++++|+++...    ++..|.   +++.||.++++.+|+++|++++++      ++
T Consensus       185 ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~----~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~  260 (515)
T 2jis_A          185 ARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKG----AAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVP  260 (515)
T ss_dssp             HHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHH----HHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHhhHHhhcCccccCCeEEEECCCccHHHHHH----HHHcCCCCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCc
Confidence            62100   12 464      899999999986544    444566   899999988899999999999975      48


Q ss_pred             eEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCccccc-----CCCC-CccEEEecCcCcCC-CCcceEEEE
Q 017640          210 KLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD-----VQGL-DADFLVASSHKMCG-PTGIGFLFG  282 (368)
Q Consensus       210 ~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~-----~~~~-~~d~~~~s~~K~~g-~~G~G~l~~  282 (368)
                      ++|++++++|+||.+.|+++|.++|++||+++++|++|+.+..+.+     +... ++|++++|+||+++ |.|+|++++
T Consensus       261 ~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~  340 (515)
T 2jis_A          261 FLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLL  340 (515)
T ss_dssp             EEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEE
T ss_pred             EEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEE
Confidence            9999999999999999999999999999999999999998776543     3333 68999999999765 778999999


Q ss_pred             ccc--cccc----CCCcccCCcceeecccCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 017640          283 KSD--LLSA----MPPFLGGGEMISDVFLDHSTFA-DPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIIC  355 (368)
Q Consensus       283 ~~~--li~~----l~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~  355 (368)
                      +++  +++.    ..++..+++.......+...+. ...+|+     .   ..++..++..+...|++.+.++..+++++
T Consensus       341 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~-----~---al~~~~~l~~lg~~g~~~~~~~~~~~a~~  412 (515)
T 2jis_A          341 QDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRV-----D---CLKLWLMWKAQGDQGLERRIDQAFVLARY  412 (515)
T ss_dssp             SCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCC-----C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcc-----c---HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            987  5554    3344433322110000000000 011111     1   23444456666667889999999999999


Q ss_pred             HHHHHHhhcCCC
Q 017640          356 SIIVIQERHNTT  367 (368)
Q Consensus       356 l~~~l~~~~g~t  367 (368)
                      +.+.|.+++|++
T Consensus       413 l~~~L~~~~g~~  424 (515)
T 2jis_A          413 LVEEMKKREGFE  424 (515)
T ss_dssp             HHHHHHTSTTEE
T ss_pred             HHHHHhcCCCEE
Confidence            999999987754

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.96  E-value=2e-27  Score=222.26  Aligned_cols=250  Identities=12%  Similarity=0.102  Sum_probs=196.1

Q ss_pred             CCCeEEeccCCCC-CCcHHHHHHHHHHHHH----hhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           65 SKKLVYLDNAATS-QKPIAVLKALQNYYEA----YNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        65 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++++++|+.+.+. ++++.+.+++.+.+..    ...++..+           ..++|+++++++|.+++ +|++|+|++
T Consensus        25 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~-----------~~~lr~~la~~~g~~~~-~i~~t~g~~   92 (360)
T 3hdo_A           25 IASWIKLNTNENPYPPSPEVVKAILEELGPDGAALRIYPSAS-----------SQKLREVAGELYGFDPS-WIIMANGSD   92 (360)
T ss_dssp             CTTSEECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGSCCCSS-----------CHHHHHHHHHHHTCCGG-GEEEESSHH
T ss_pred             ccceeeccCCCCCCCCCHHHHHHHHHHHhcccchhhcCCCCc-----------hHHHHHHHHHHhCcCcc-eEEEcCCHH
Confidence            4678999999877 6789999999988765    33332211           23899999999997664 999999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEccccc
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISN  219 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n  219 (368)
                      +|+..++.++    +++||+|++.+|+|++..    ..++..|++++.++.++++.+  +++++++  +++++++++++|
T Consensus        93 ~al~~~~~~l----~~~gd~Vl~~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~~--~~l~~~~--~~~~v~i~~p~n  160 (360)
T 3hdo_A           93 EVLNNLIRAF----AAEGEEIGYVHPSYSYYG----TLAEVQGARVRTFGLTGDFRI--AGFPERY--EGKVFFLTTPNA  160 (360)
T ss_dssp             HHHHHHHHHH----CCTTCEEEEESSSCTHHH----HHHHHHTCEEEEECBCTTSSB--TTCCSSB--CSSEEEEESSCT
T ss_pred             HHHHHHHHHH----hCCCCEEEEcCCChHHHH----HHHHHCCCEEEEeeCCCCCCH--HHHHhhc--CCCEEEEeCCCC
Confidence            9999999998    889999999999998854    445566999999999876655  4444433  467999999999


Q ss_pred             ccccccCHHHHHHHHHhcCCEEEEecCCcC--CcccccC-CCCCccEEEecCcCcCCCCc--ceEEEEcccccccCCCcc
Q 017640          220 MLASILPIEEIVHWSHDVGAKVLVDACQSV--PHMVVDV-QGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFL  294 (368)
Q Consensus       220 ~tG~~~~l~~i~~l~~~~g~~li~D~a~~~--~~~~~~~-~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~~~~  294 (368)
                      |||.++|+++|.++|+++|+++|+|++|+.  +...+.. ...+.+++++|+||.+|++|  +|++++++++++.+....
T Consensus       161 ptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~  240 (360)
T 3hdo_A          161 PLGPSFPLEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARPEVIAALDKIR  240 (360)
T ss_dssp             TTCCCCCHHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECCHHHHHHHHHHS
T ss_pred             CCCCCcCHHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCccceeeEeeCHHHHHHHHHhC
Confidence            999999999999999999999999999983  2111111 22356789999999988776  899999988887665332


Q ss_pred             cCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          295 GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       295 ~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      .                       ..+.+.....++..+++...  .++.++++..++.+++.+.|.+.
T Consensus       241 ~-----------------------~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~  284 (360)
T 3hdo_A          241 D-----------------------HYNLDRLAQAACVAALRDQA--YLSECCRRIRETREWFTTELRSI  284 (360)
T ss_dssp             C-----------------------SCCSCHHHHHHHHHHHHCHH--HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             C-----------------------CCCCCHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHHHHC
Confidence            1                       12577788888888877522  36788888999999999999876

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=99.96  E-value=1.2e-27  Score=227.41  Aligned_cols=260  Identities=15%  Similarity=0.120  Sum_probs=197.5

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHH--hhccCCCCcchhhHHHHHHHHHHHHHHHHHc----CCC-C-CCcEEEeC
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEA--YNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS-D-SGEIVFTK  136 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~-~-~~~v~~t~  136 (368)
                      .++++|+.+.+. ..++.+.+++.+.+..  ...++.          .....++|+++++++    |.+ . .++|++|+
T Consensus        47 ~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~----------~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~  116 (404)
T 2o1b_A           47 LPLINMAVGIPDGPTPQGIIDHFQKALTIPENQKYGA----------FHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILY  116 (404)
T ss_dssp             SCCEECCCCSCSSCCCHHHHHHHHHHTTCHHHHSCCC----------TTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEES
T ss_pred             CCEEecCCcCCCCCCCHHHHHHHHHHHhCCCCCCCCC----------CCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcC
Confidence            567889888766 4678899998887642  111211          011236777777776    875 2 24899999


Q ss_pred             CHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC-CCCCCHHHHHHhcccCceEEEEc
Q 017640          137 NATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIH  215 (368)
Q Consensus       137 g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~l~~~~~~v~~~  215 (368)
                      |+++++..++.++    +++||+|++.+|+|++...    .++..|++++.++.++ ++.+|+++|++++++++++|+++
T Consensus       117 G~~~al~~~~~~l----~~~gd~Vl~~~p~y~~~~~----~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~  188 (404)
T 2o1b_A          117 GTKNGLVAVPTCV----INPGDYVLLPDPGYTDYLA----GVLLADGKPVPLNLEPPHYLPDWSKVDSQIIDKTKLIYLT  188 (404)
T ss_dssp             SHHHHHHHHHHHH----CCTTCEEEEEESCCSSHHH----HHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHHEEEEEEC
T ss_pred             CcHHHHHHHHHHh----cCCCCEEEEcCCCchhHHH----HHHHCCCEEEEeccCcccCcCCHHHHHHhhccCceEEEEc
Confidence            9999999999998    7899999999999998543    4456799999999876 34689999999888788999999


Q ss_pred             ccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc---cccCCC----CCccEEEecCcCcCCCCc--ceEEEEc
Q 017640          216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVDVQG----LDADFLVASSHKMCGPTG--IGFLFGK  283 (368)
Q Consensus       216 ~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~---~~~~~~----~~~d~~~~s~~K~~g~~G--~G~l~~~  283 (368)
                      +++||||.++|   +++|.++|++||+++|+|++|+....   +.++..    .+.+++++|+||.+|++|  +|+++++
T Consensus       189 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~  268 (404)
T 2o1b_A          189 YPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVGN  268 (404)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEEC
T ss_pred             CCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchhheEeEecC
Confidence            99999999998   77899999999999999999985331   112211    246799999999998777  7999999


Q ss_pred             ccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          284 SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       284 ~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +++++.+.+....                     ..++.+.....++..+++... ..++.++++.+++.+++.+.|++.
T Consensus       269 ~~~~~~l~~~~~~---------------------~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~  326 (404)
T 2o1b_A          269 KDMIQALKKYQTH---------------------TNAGMFGALQDAAIYALNHYD-DFLEEQSNVFKTRRDRFEAMLAKA  326 (404)
T ss_dssp             HHHHHHHHHHHHH---------------------HCCCCCHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhh---------------------ccCCCCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9888776543221                     123567777777777776532 246788888889999999999876


Q ss_pred             cCC
Q 017640          364 HNT  366 (368)
Q Consensus       364 ~g~  366 (368)
                       |+
T Consensus       327 -g~  328 (404)
T 2o1b_A          327 -DL  328 (404)
T ss_dssp             -TC
T ss_pred             -CC
Confidence             44

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.96  E-value=6.4e-27  Score=224.09  Aligned_cols=257  Identities=19%  Similarity=0.181  Sum_probs=200.9

Q ss_pred             CCeEEeccCCC-C-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHH
Q 017640           66 KKLVYLDNAAT-S-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN  143 (368)
Q Consensus        66 ~~~i~l~~~~~-~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~  143 (368)
                      +.++.|..+.+ + ..++.+.+++.+.+..+....  +.+....+..+...++++.+++++|.+   ++++++++++++.
T Consensus        64 ~~~id~~~~~~lg~~~~~~v~~a~~~~~~~~~~~~--~~~~~~~G~~~~~~~l~~~la~~~g~~---~~i~~~sGs~a~~  138 (427)
T 2w8t_A           64 KDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGT--CGSRMLNGTFHDHMEVEQALRDFYGTT---GAIVFSTGYMANL  138 (427)
T ss_dssp             EEEEECSCCCTTCGGGCHHHHHHHHHHHHHHCSCC--CSCTTTTCCCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHH
T ss_pred             ceEEEEECcccccCCCCHHHHHHHHHHHHHhCCCC--cccccccCCcHHHHHHHHHHHHHhCCC---ceEEecCcHHHHH
Confidence            45667777654 5 478999999999887743111  111112222466778999999999975   5566777778999


Q ss_pred             HHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc----CceEEEEccccc
Q 017640          144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR----KTKLVVIHHISN  219 (368)
Q Consensus       144 ~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~----~~~~v~~~~~~n  219 (368)
                      .++.++    +++||.|++..+.|.+....    ++..|++++.++..     |+++|++++++    ++++|++++++|
T Consensus       139 ~al~~l----~~~gd~vl~~~~~h~~~~~~----~~~~g~~~~~~~~~-----d~~~le~~l~~~~~~~~~~v~~~~~~n  205 (427)
T 2w8t_A          139 GIISTL----AGKGEYVILDADSHASIYDG----CQQGNAEIVRFRHN-----SVEDLDKRLGRLPKEPAKLVVLEGVYS  205 (427)
T ss_dssp             HHHHHH----SCTTCEEEEETTCCHHHHHH----HHHSCSEEEEECTT-----CHHHHHHHHHTSCSSSCEEEEEESEET
T ss_pred             HHHHHh----cCCCCEEEECCcccHHHHHH----HHHcCCeeEEeCCC-----CHHHHHHHHHhccCCCCeEEEEcCCCC
Confidence            999988    78999999999999986543    45569999988853     89999999876    789999999999


Q ss_pred             ccccccCHHHHHHHHHhcCCEEEEecCCcCCccc---------ccCCCCCccEEEecCcCcCCCCcceEEEEcccccccC
Q 017640          220 MLASILPIEEIVHWSHDVGAKVLVDACQSVPHMV---------VDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAM  290 (368)
Q Consensus       220 ~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~---------~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l  290 (368)
                      |||.+.|+++|.++|++||+++|+|++|+.+...         +++. .++|++++|+||.+|++| |++++++++++.+
T Consensus       206 ~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~-~~~di~~~s~sK~~g~~g-G~v~~~~~l~~~l  283 (427)
T 2w8t_A          206 MLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVGTFSKSVGTVG-GFVVSNHPKFEAV  283 (427)
T ss_dssp             TTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCT-TCCSEEEEESSSTTCSCC-EEEEECCTTGGGG
T ss_pred             CCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCC-cCCcEEEecchhhhccCC-CEEEeCHHHHHHH
Confidence            9999999999999999999999999999976543         3332 267999999999999887 9999999988877


Q ss_pred             CCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          291 PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       291 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      .+....                  ..+ .++.+..+++++..+++.+..  .+.++++..++.+++.+.|.+.
T Consensus       284 ~~~~~~------------------~~~-~~~~~~~~~aa~~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~  335 (427)
T 2w8t_A          284 RLACRP------------------YIF-TASLPPSVVATATTSIRKLMT--AHEKRERLWSNARALHGGLKAM  335 (427)
T ss_dssp             GGTCHH------------------HHS-SCCCCHHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccc------------------ccc-cCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc
Confidence            643110                  011 346788888888888887653  5788899999999999999876

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=99.96  E-value=7.1e-28  Score=229.44  Aligned_cols=259  Identities=20%  Similarity=0.167  Sum_probs=194.7

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----CCC-CCC-cEEEeCCH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS-DSG-EIVFTKNA  138 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~-~~~-~v~~t~g~  138 (368)
                      +++++|+.+... +.++.+.+++.+.+... ..    .+....+..    ++|+.+++++    |.+ .++ +|++|+|+
T Consensus        25 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~----~y~~~~g~~----~l~~~la~~~~~~~g~~~~~~~~v~~t~g~   95 (411)
T 2o0r_A           25 IGAVNLGQGFPDEDGPPKMLQAAQDAIAGG-VN----QYPPGPGSA----PLRRAIAAQRRRHFGVDYDPETEVLVTVGA   95 (411)
T ss_dssp             TTCEESSCSSCSSCCCHHHHHHHHHHHHTT-CC----SCCCTTCCH----HHHHHHHHHHHHHHCCCCCTTTSEEEEEHH
T ss_pred             CCeeeccCcCCCCCCCHHHHHHHHHHHhcC-CC----CCCCCCCCH----HHHHHHHHHHHHHcCCCCCCCceEEEeCCH
Confidence            457899888776 57889999999888651 01    111111112    4555555554    754 334 89999999


Q ss_pred             HHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC---CCCCHHHHHHhcccCceEEEEc
Q 017640          139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD---ESPDLDKLKEMLSRKTKLVVIH  215 (368)
Q Consensus       139 t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~---~~~d~~~l~~~l~~~~~~v~~~  215 (368)
                      ++|+..++.++    +++||+|++.+|+|++..    ..++..|.+++.++.+++   +.+|+++|++++++++++|+++
T Consensus        96 ~~al~~~~~~~----~~~gd~Vl~~~~~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~  167 (411)
T 2o0r_A           96 TEAIAAAVLGL----VEPGSEVLLIEPFYDSYS----PVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIIN  167 (411)
T ss_dssp             HHHHHHHHHHH----CCTTCEEEEEESCCTTHH----HHHHHTTCEEEEEECEEETTEEECCHHHHHHHCCTTEEEEEEE
T ss_pred             HHHHHHHHHHh----cCCCCEEEEeCCCcHhHH----HHHHHcCCEEEEeeccccccCCCCCHHHHHHhhccCceEEEEe
Confidence            99999999998    789999999999999854    345667999999998753   5689999999999899999999


Q ss_pred             ccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc------cc-cCCC-CCccEEEecCcCcCCCCc--ceEEEE
Q 017640          216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM------VV-DVQG-LDADFLVASSHKMCGPTG--IGFLFG  282 (368)
Q Consensus       216 ~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~------~~-~~~~-~~~d~~~~s~~K~~g~~G--~G~l~~  282 (368)
                      +++||||.++|   +++|.++|++||+++|+|++|+.+..      ++ .+.. .+.|++++|+||.+|++|  +|++++
T Consensus       168 ~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~  247 (411)
T 2o0r_A          168 SPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACG  247 (411)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEEC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEEEee
Confidence            99999999998   58999999999999999999985432      11 2221 467999999999999888  999999


Q ss_pred             cccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHh
Q 017640          283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       283 ~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~  362 (368)
                      ++++++.+.+....                     ...+.+....+++..+++... ..++.++++..++.+++.+.|.+
T Consensus       248 ~~~~~~~l~~~~~~---------------------~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~  305 (411)
T 2o0r_A          248 PAELIAGVRAAKQY---------------------LSYVGGAPFQPAVALALDTED-AWVAALRNSLRARRDRLAAGLTE  305 (411)
T ss_dssp             CHHHHHHHHHHHHH---------------------HTSCCCTTHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhh---------------------ccCCCChHHHHHHHHHHhCCh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99887766533210                     011334445566666776442 24678888899999999999987


Q ss_pred             h
Q 017640          363 R  363 (368)
Q Consensus       363 ~  363 (368)
                      .
T Consensus       306 ~  306 (411)
T 2o0r_A          306 I  306 (411)
T ss_dssp             H
T ss_pred             c
Confidence            5

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.95  E-value=2.4e-27  Score=223.49  Aligned_cols=252  Identities=14%  Similarity=0.171  Sum_probs=197.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcC-
Q 017640          104 FLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTG-  182 (368)
Q Consensus       104 ~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g-  182 (368)
                      ..+..+.+..+++++.+++++|.+  +.++||+|+|+|++.++..+     ++||+|++.+++|++..  +...++..| 
T Consensus        28 h~~~~~~~~~~~~~~~l~~~~~~~--~~v~~~~sgt~a~~~~~~~~-----~~gd~vi~~~~~~~~~~--~~~~~~~~g~   98 (379)
T 3ke3_A           28 HMSKAFQEVMNDLLSNLKTVYNAE--AAVIIPGSGTYGMEAVARQL-----TIDEDCLIIRNGWFSYR--WTQILEKGKF   98 (379)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHTCS--EEEEEESCHHHHHHHHHHHH-----CTTCEEEEEECSHHHHH--HHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCC--CEEEEcCChhHHHHHHHHhC-----CCCCeEEEEeCCchhHH--HHHHHHHhCC
Confidence            345566788889999999999987  48899999999999998654     58999999999998753  445556666 


Q ss_pred             -CEEEEEeCCCC---------CCCCHHHHHHhcc-cCceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCc
Q 017640          183 -ANLKFLNLNDD---------ESPDLDKLKEMLS-RKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQS  248 (368)
Q Consensus       183 -~~v~~v~~~~~---------~~~d~~~l~~~l~-~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~  248 (368)
                       .+++.++.+.+         +.+|++++++++. +++++|++++++|+||.+.|   +++|.++|++||+++++|++|+
T Consensus        99 ~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~  178 (379)
T 3ke3_A           99 AKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS  178 (379)
T ss_dssp             SSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred             CCceEEEeccccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence             47888886532         2579999999995 48999999999999999999   9999999999999999999999


Q ss_pred             CCcccccCCCCCccEEEecCcCcC-CCCcceEEEEcccccccCCCcccCCcceee-cccC-CCCCCCCCCCCCCCCCCHH
Q 017640          249 VPHMVVDVQGLDADFLVASSHKMC-GPTGIGFLFGKSDLLSAMPPFLGGGEMISD-VFLD-HSTFADPPSRFEAGTPAIG  325 (368)
Q Consensus       249 ~~~~~~~~~~~~~d~~~~s~~K~~-g~~G~G~l~~~~~li~~l~~~~~g~~~~~~-~~~~-~~~~~~~~~~~~~gt~~~~  325 (368)
                       |..++++..+++|++++|+||++ ||+|+|++++++++++.+.+.......... .+.. ...+... .+...+|+++.
T Consensus       179 -g~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~t~~~~  256 (379)
T 3ke3_A          179 -GCVWLDMKELGIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENG-GHAYHATMPTD  256 (379)
T ss_dssp             -TTCCCCHHHHTCSEEEECTTTTTCSCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTT-SCCCSSCCCHH
T ss_pred             -CCccccccccCCCEEEecchhhcCCCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhcc-CCCCCCCCCHH
Confidence             88877777778999999999965 577899999999988776543211100000 0000 0000000 11123599999


Q ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          326 EAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       326 ~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      .++++.++++++.+.|++.++++..++++++.+.|.++ |++
T Consensus       257 ~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~-g~~  297 (379)
T 3ke3_A          257 SLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDK-GIE  297 (379)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCE
Confidence            99999999999999899999999999999999999876 543

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.95  E-value=4.2e-27  Score=229.69  Aligned_cols=269  Identities=20%  Similarity=0.163  Sum_probs=210.3

Q ss_pred             CcHHHHHHHHHHHHHhhc-cCCCCcchhhHHHHHHHHHHHHHHHHHcCCC-CCCcEEEeCCHHHHHHHHHHHccCCC-CC
Q 017640           79 KPIAVLKALQNYYEAYNS-NVHRGIHFLSAKATDEYELARKKVAAFINAS-DSGEIVFTKNATEAINLVAYSWGLSN-LK  155 (368)
Q Consensus        79 ~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~~v~~t~g~t~a~~~~~~~~~~~~-~~  155 (368)
                      .++.+.+++.+.+..+.. ++.  .+.......+..+++++++++++|.+ ..+++++++|+++|+.+++.++.... -+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~  153 (497)
T 3mc6_A           76 GGDDLIHLQTIAYEKYCVANQL--HPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHH  153 (497)
T ss_dssp             CCHHHHHHHHHHHHHTSSCBTT--CTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhcCCC--CcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhc
Confidence            457788888887776422 222  22333456788889999999999998 34589999999999999999872100 00


Q ss_pred             CC---CEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC-CCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHH
Q 017640          156 SG---DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV  231 (368)
Q Consensus       156 ~g---d~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~  231 (368)
                      +|   ++|+++.+.|++    +...++..|++++.|++++ ++.+|+++|++++++++++|++++++||||.+.|+++|.
T Consensus       154 ~g~~~~~Vi~~~~~h~~----~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~l~~i~  229 (497)
T 3mc6_A          154 RGITEPEIIAPVTAHAG----FDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLG  229 (497)
T ss_dssp             SCCSSCEEEEETTSCHH----HHHHHHHSCCEEEEECBCTTTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCSCTTTT
T ss_pred             CCCCCceEEEeCCccHH----HHHHHHHcCCeEEEEecCcccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCCHHHHH
Confidence            34   899999999888    4455667799999999987 789999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEEecCCcCCc-----------c-cccCCCCCccEEEecCcCc-CCCCcceEEEEcccccccCCCcc----
Q 017640          232 HWSHDVGAKVLVDACQSVPH-----------M-VVDVQGLDADFLVASSHKM-CGPTGIGFLFGKSDLLSAMPPFL----  294 (368)
Q Consensus       232 ~l~~~~g~~li~D~a~~~~~-----------~-~~~~~~~~~d~~~~s~~K~-~g~~G~G~l~~~~~li~~l~~~~----  294 (368)
                      ++|++||+++|+|++|+.+.           . +++....+.|++++|+||+ +++.|+|+++++++.+.......    
T Consensus       230 ~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~  309 (497)
T 3mc6_A          230 KIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAW  309 (497)
T ss_dssp             THHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTC
T ss_pred             HHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhcccccc
Confidence            99999999999999998322           2 3455556799999999996 58888999999887665443221    


Q ss_pred             cCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHh-hcCCC
Q 017640          295 GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQE-RHNTT  367 (368)
Q Consensus       295 ~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~-~~g~t  367 (368)
                      .++..              ......|+.+...++++.++++.+...|++.+.++..++++++.+.|.+ ++|++
T Consensus       310 ~~~~~--------------~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~  369 (497)
T 3mc6_A          310 TGGLY--------------GSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLD  369 (497)
T ss_dssp             TTSCB--------------CCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCE
T ss_pred             cCCCc--------------CCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence            11100              0111256777788889999999998888999999999999999999999 57754

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.9e-27  Score=229.17  Aligned_cols=263  Identities=17%  Similarity=0.164  Sum_probs=199.3

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----CCC-CCCcEEEeCCHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS-DSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~-~~~~v~~t~g~t  139 (368)
                      +++++|..+... ++|+.+.+++.+.+.......    +..    .....++|+++++++    |.+ ++++|++|+|++
T Consensus        57 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~----Y~~----~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~  128 (447)
T 3b46_A           57 RELINLGQGFFSYSPPQFAIKEAQKALDIPMVNQ----YSP----TRGRPSLINSLIKLYSPIYNTELKAENVTVTTGAN  128 (447)
T ss_dssp             SCCEECCCCSCSSCCCHHHHHHHHHHTTSGGGGS----CCC----TTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHH
T ss_pred             CCeEEccCCCCCCCCCHHHHHHHHHHHhCcCCCC----CCC----CCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHH
Confidence            678899888765 568899999988876411110    111    111225666666665    543 224899999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC------------CCCCCHHHHHHhccc
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND------------DESPDLDKLKEMLSR  207 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~------------~~~~d~~~l~~~l~~  207 (368)
                      +|+..++.++    +++||+|++.+|.|++..    ..++..|++++.++.++            ++.+|+++|++++++
T Consensus       129 ~al~~~~~~l----~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~  200 (447)
T 3b46_A          129 EGILSCLMGL----LNAGDEVIVFEPFFDQYI----PNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITS  200 (447)
T ss_dssp             HHHHHHHHHH----CCTTCEEEEEESCCTTHH----HHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCT
T ss_pred             HHHHHHHHHH----cCCCCEEEEeCCCchhHH----HHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhcc
Confidence            9999999998    889999999999999844    34566799999999764            357899999999998


Q ss_pred             CceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc-----cc-cC--CCCCccEEEecCcCcCCCCc
Q 017640          208 KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM-----VV-DV--QGLDADFLVASSHKMCGPTG  276 (368)
Q Consensus       208 ~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~-----~~-~~--~~~~~d~~~~s~~K~~g~~G  276 (368)
                      ++++|++++++||||.++|   +++|.++|++||+++|+|++|+....     ++ .+  ...+.++++.|+||.+|++|
T Consensus       201 ~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G  280 (447)
T 3b46_A          201 KTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATG  280 (447)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTT
T ss_pred             CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcc
Confidence            9999999999999999987   88999999999999999999985221     12 12  12468999999999999888


Q ss_pred             --ceEEEE-cccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHH
Q 017640          277 --IGFLFG-KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEVKW  352 (368)
Q Consensus       277 --~G~l~~-~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~-g~~~i~~~~~~l  352 (368)
                        +||+++ ++++++.+.....                     ....+.+.....++..+++..... .++.++++.+++
T Consensus       281 ~riG~~~~~~~~l~~~l~~~~~---------------------~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~  339 (447)
T 3b46_A          281 WRIGWVLSLNAELLSYAAKAHT---------------------RICFASPSPLQEACANSINDALKIGYFEKMRQEYINK  339 (447)
T ss_dssp             SCCEEEECSCHHHHHHHHHHHH---------------------HHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             hhhEEEEeCCHHHHHHHHHHHh---------------------hccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHH
Confidence              999999 8888776653221                     012256777777788888765322 367888999999


Q ss_pred             HHHHHHHHHhhcCC
Q 017640          353 IICSIIVIQERHNT  366 (368)
Q Consensus       353 ~~~l~~~l~~~~g~  366 (368)
                      .+++.+.|.+. |+
T Consensus       340 ~~~l~~~L~~~-g~  352 (447)
T 3b46_A          340 FKIFTSIFDEL-GL  352 (447)
T ss_dssp             HHHHHHHHHHH-TC
T ss_pred             HHHHHHHHHHC-CC
Confidence            99999999876 54

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.95  E-value=8.4e-28  Score=228.57  Aligned_cols=260  Identities=15%  Similarity=0.155  Sum_probs=195.9

Q ss_pred             CCeEEeccCCC---C-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----C--CCCCCcEEEe
Q 017640           66 KKLVYLDNAAT---S-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----N--ASDSGEIVFT  135 (368)
Q Consensus        66 ~~~i~l~~~~~---~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~--~~~~~~v~~t  135 (368)
                      +++++|+.+.+   . +.++.+.+++.+.+.... .    .+..    .....++|+.+++++    |  .++ ++|++|
T Consensus        38 ~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~-~----~y~~----~~g~~~l~~~la~~l~~~~g~~~~~-~~v~~t  107 (406)
T 1xi9_A           38 IKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGH-N----YYGD----SEGLPELRKAIVEREKRKNGVDITP-DDVRVT  107 (406)
T ss_dssp             CCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTC-C----SCCC----TTCCHHHHHHHHHHHHHHHCCCCCG-GGEEEE
T ss_pred             CCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCC-C----CCCC----CCCcHHHHHHHHHHHHHhcCCCCCH-HHEEEc
Confidence            57889999887   4 567899999988876421 0    0111    111235666666665    3  333 499999


Q ss_pred             CCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC--CCCCCHHHHHHhcccCceEEE
Q 017640          136 KNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVV  213 (368)
Q Consensus       136 ~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~~~~~v~  213 (368)
                      +|+++|+..++.++    +++||+|++.+|+|++.    ...++..|++++.++.++  ++.+|+++|++++++++++|+
T Consensus       108 ~g~~~al~~~~~~l----~~~gd~Vl~~~~~~~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~  179 (406)
T 1xi9_A          108 AAVTEALQLIFGAL----LDPGDEILVPGPSYPPY----TGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIA  179 (406)
T ss_dssp             SHHHHHHHHHHHHH----CCTTCEEEEEESCCHHH----HHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEE
T ss_pred             CChHHHHHHHHHHh----CCCCCEEEEcCCCCccH----HHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCcCceEEE
Confidence            99999999999998    78999999999998874    444566799999999874  456899999999998999999


Q ss_pred             EcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc---cccCCC--CCc-cEEEecCcCcCCCCc--ceEEE-
Q 017640          214 IHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVDVQG--LDA-DFLVASSHKMCGPTG--IGFLF-  281 (368)
Q Consensus       214 ~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~---~~~~~~--~~~-d~~~~s~~K~~g~~G--~G~l~-  281 (368)
                      +++++||||.++|   +++|.++|++||+++|+|++|+.+..   ...+..  .+. +++++|+||.+|++|  +|+++ 
T Consensus       180 i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~  259 (406)
T 1xi9_A          180 VINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYF  259 (406)
T ss_dssp             EESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEEEE
T ss_pred             EECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccCCCccEEEEEEE
Confidence            9999999999998   89999999999999999999986432   111111  356 899999999999888  89999 


Q ss_pred             -Ecc----cccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 017640          282 -GKS----DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICS  356 (368)
Q Consensus       282 -~~~----~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l  356 (368)
                       .++    ++++.+.....                     +. ++.+.....++..+++...+ .++.++++..++.+++
T Consensus       260 ~~~~~~~~~l~~~l~~~~~---------------------~~-~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~l  316 (406)
T 1xi9_A          260 VDPENKLSEVREAIDRLAR---------------------IR-LCPNTPAQFAAIAGLTGPMD-YLKEYMKKLKERRDYI  316 (406)
T ss_dssp             ECTTCTTHHHHHHHHHHHH---------------------HT-CCSCSHHHHHHHHHHHSCCH-HHHHHHHHHHHHHHHH
T ss_pred             ecCchhHHHHHHHHHHHHH---------------------hh-cCCCHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHHHH
Confidence             888    77766553221                     01 25566666777777753222 2678888899999999


Q ss_pred             HHHHHhhcCC
Q 017640          357 IIVIQERHNT  366 (368)
Q Consensus       357 ~~~l~~~~g~  366 (368)
                      .+.|.+++|+
T Consensus       317 ~~~L~~~~~~  326 (406)
T 1xi9_A          317 YKRLNEIPGI  326 (406)
T ss_dssp             HHHHHTSTTE
T ss_pred             HHHHHhCCCC
Confidence            9999887554

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=99.95  E-value=1.9e-27  Score=226.59  Aligned_cols=264  Identities=16%  Similarity=0.152  Sum_probs=195.7

Q ss_pred             CCCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----CCC-CC-CcEEEeCC
Q 017640           65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS-DS-GEIVFTKN  137 (368)
Q Consensus        65 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~-~~-~~v~~t~g  137 (368)
                      ++++++|+.+... ..++.+.+++.+.+......    .+.    ......++|+.+++++    |.+ .+ ++|++|+|
T Consensus        36 g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~----~y~----~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g  107 (412)
T 2x5d_A           36 GEDIIDLSMGNPDGPTPPHIVEKLCTVAQREDTH----GYS----TSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIG  107 (412)
T ss_dssp             TCCCEECSSCCCCSCCCHHHHHHHHHTC-----------------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESC
T ss_pred             CCCEEecCCCCCCCCCCHHHHHHHHHHHhCCCCC----CCC----CCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCC
Confidence            3567899888766 46888999888776542100    010    0112346777777777    863 22 49999999


Q ss_pred             HHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC--CCCCHHHHHHhcccCceEEEEc
Q 017640          138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLVVIH  215 (368)
Q Consensus       138 ~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~l~~~~~~v~~~  215 (368)
                      +++++..++.++    +++||+|++.+|+|++...    .++..|++++.++.+++  +.+|+++|++++++++++|+++
T Consensus       108 ~~~a~~~~~~~~----~~~gd~Vl~~~p~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~l~  179 (412)
T 2x5d_A          108 SKEGLAHLMLAT----LDHGDTILVPNPSYPIHIY----GAVIAGAQVRSVPLVPGIDFFNELERAIRESIPKPRMMILG  179 (412)
T ss_dssp             HHHHHHHHHHHH----CCTTCEEEEEESCCHHHHH----HHHHHTCEEEEEECSTTSCHHHHHHHHHHTEESCCSEEEEE
T ss_pred             hHHHHHHHHHHh----CCCCCEEEEcCCCchhHHH----HHHHcCCEEEEeecCCccCCCCCHHHHHHhcccCceEEEEC
Confidence            999999999998    7899999999999988544    34556999999998764  3378999999998889999999


Q ss_pred             ccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc----cc---cCCC-CCccEEEecCcCcCCCCc--ceEEEE
Q 017640          216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VV---DVQG-LDADFLVASSHKMCGPTG--IGFLFG  282 (368)
Q Consensus       216 ~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~----~~---~~~~-~~~d~~~~s~~K~~g~~G--~G~l~~  282 (368)
                      +++||||.++|   +++|.++|++||+++|+|++|+.+..    ..   .+.. .+.+++++|+||.+|++|  +|++++
T Consensus       180 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~  259 (412)
T 2x5d_A          180 FPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVG  259 (412)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEEE
T ss_pred             CCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcccceEEEEc
Confidence            99999999998   68899999999999999999986432    11   2221 357899999999998777  899999


Q ss_pred             cccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHh
Q 017640          283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       283 ~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~  362 (368)
                      ++++++.+......                     ..++.+.....++..+++...+ .++.++++..++.+++.+.|.+
T Consensus       260 ~~~~~~~l~~~~~~---------------------~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~  317 (412)
T 2x5d_A          260 NPELVSALARIKSY---------------------HDYGTFTPLQVAAIAALEGDQQ-CVRDIARQYQQRRDVLVKGLRE  317 (412)
T ss_dssp             CHHHHHHHHHHHHH---------------------HCCCCCHHHHHHHHHHHHSCSH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhh---------------------hccCCCHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            99888776543211                     1235677777777666664322 3677888889999999999987


Q ss_pred             hcCCC
Q 017640          363 RHNTT  367 (368)
Q Consensus       363 ~~g~t  367 (368)
                      . |++
T Consensus       318 ~-g~~  321 (412)
T 2x5d_A          318 A-GWM  321 (412)
T ss_dssp             H-TCC
T ss_pred             C-CCE
Confidence            6 543

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=99.95  E-value=2.4e-27  Score=224.24  Aligned_cols=255  Identities=14%  Similarity=0.138  Sum_probs=193.0

Q ss_pred             CCCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----C--CCCCCcEEEeCC
Q 017640           65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----N--ASDSGEIVFTKN  137 (368)
Q Consensus        65 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~--~~~~~~v~~t~g  137 (368)
                      ++++++|+.+... +.++.+.+++.+.+....         .++.......++|+.+++++    |  .++ ++|++|+|
T Consensus        30 g~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~---------~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~-~~v~~t~g   99 (391)
T 3h14_A           30 GRRIIHMEVGQPGTGAPRGAVEALAKSLETDA---------LGYTVALGLPALRQRIARLYGEWYGVDLDP-GRVVITPG   99 (391)
T ss_dssp             TCCCEECCCSSCSSCSCHHHHHHHHHHHC-------------------CCHHHHHHHHHHHHHHHCCCCCG-GGEEEESS
T ss_pred             CCCeEEccCCCCCCCCCHHHHHHHHHHHhcCC---------CCCCCCCChHHHHHHHHHHHHHHhCCCCCH-HHEEEecC
Confidence            3678999998877 558889999888775310         01111122346666666666    4  344 49999999


Q ss_pred             HHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC--CCCCHHHHHHhcccCceEEEEc
Q 017640          138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLVVIH  215 (368)
Q Consensus       138 ~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~l~~~~~~v~~~  215 (368)
                      +++|+..++.++    +++||+|++.+|+|++..    ..++..|++++.++++++  +.+|+++|+++   ++++|+++
T Consensus       100 ~~~al~~~~~~l----~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~---~~~~v~i~  168 (391)
T 3h14_A          100 SSGGFLLAFTAL----FDSGDRVGIGAPGYPSYR----QILRALGLVPVDLPTAPENRLQPVPADFAGL---DLAGLMVA  168 (391)
T ss_dssp             HHHHHHHHHHHH----CCTTCEEEEEESCCHHHH----HHHHHTTCEEEEEECCGGGTTSCCHHHHTTS---CCSEEEEE
T ss_pred             hHHHHHHHHHHh----cCCCCEEEEcCCCCccHH----HHHHHcCCEEEEeecCcccCCCCCHHHHHhc---CCeEEEEC
Confidence            999999999998    889999999999888754    445667999999999854  57799999877   78999999


Q ss_pred             ccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc---cccCCC-CCccEEEecCcCcCCCCc--ceEEEEcccc
Q 017640          216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVDVQG-LDADFLVASSHKMCGPTG--IGFLFGKSDL  286 (368)
Q Consensus       216 ~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~---~~~~~~-~~~d~~~~s~~K~~g~~G--~G~l~~~~~l  286 (368)
                      +++||||.++|   +++|.++|++||+++|+|++|+....   +..... .+.+++++|+||.+|++|  +|++++++++
T Consensus       169 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~  248 (391)
T 3h14_A          169 SPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTGWRVGWMVVPEDQ  248 (391)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTTSCCEEEECCGGG
T ss_pred             CCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCccceeEEEEeCHHH
Confidence            99999999999   88999999999999999999984321   122211 356789999999998777  8999999998


Q ss_pred             cccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          287 LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       287 i~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      ++.+......                     ..++++.....++.++++  ....++.++++..++.+++.+.|.+.
T Consensus       249 ~~~~~~~~~~---------------------~~~~~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~  302 (391)
T 3h14_A          249 VRVVERIAQN---------------------MFICAPHASQVAALAALD--CDAELQANLDVYKANRKLMLERLPKA  302 (391)
T ss_dssp             HHHHHHHHHH---------------------TTCCCCHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhh---------------------hccCCCHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            8776543321                     123677777777777776  23347788888999999999999876

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.95  E-value=1.4e-26  Score=217.26  Aligned_cols=254  Identities=10%  Similarity=0.066  Sum_probs=195.5

Q ss_pred             EEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHH------cCCCCCCcEEEeCCHHHH
Q 017640           69 VYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAF------INASDSGEIVFTKNATEA  141 (368)
Q Consensus        69 i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~------~~~~~~~~v~~t~g~t~a  141 (368)
                      ++|+.+.+. +.++.+.+++.+.+.......+  .+...    .. .++|+.++++      ++.++ ++|++|+|++++
T Consensus        33 idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~~--~y~~~----~~-~~l~~~la~~l~~~~g~~~~~-~~v~~~~G~~~a  104 (369)
T 3cq5_A           33 IRLNTNENPYPPSEALVADLVATVDKIATELN--RYPER----DA-VELRDELAAYITKQTGVAVTR-DNLWAANGSNEI  104 (369)
T ss_dssp             EECSSCCCCSCCCHHHHHHHHHHHHHHGGGTT--SCCCT----TC-HHHHHHHHHHHHHHHCCCCCG-GGEEEESHHHHH
T ss_pred             eeccCCCCCCCCCHHHHHHHHHHHHhcccccc--cCCCc----cH-HHHHHHHHHhhhhcccCCCCh-HhEEECCChHHH
Confidence            788888765 5789999999988876311111  11111    11 2566677776      34444 489999999999


Q ss_pred             HHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc-CceEEEEcccccc
Q 017640          142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNM  220 (368)
Q Consensus       142 ~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~  220 (368)
                      +..++.++    +++||+|++.+|+|++..    ..++..|++++.++.++++.+|+++|++++++ ++++|++++++||
T Consensus       105 l~~~~~~l----~~~gd~Vl~~~~~y~~~~----~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~np  176 (369)
T 3cq5_A          105 LQQLLQAF----GGPGRTALGFQPSYSMHP----ILAKGTHTEFIAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNP  176 (369)
T ss_dssp             HHHHHHHH----CSTTCEEEEEESSCTHHH----HHHHHTTCEEEEEECCTTSSCCHHHHHHHHHHHCCSEEEEESSCTT
T ss_pred             HHHHHHHh----cCCCCEEEEcCCChHHHH----HHHHHcCCEEEEecCCcCCCCCHHHHHHHhhccCCCEEEEeCCCCC
Confidence            99999998    789999999999998854    34566799999999887778999999999987 8999999999999


Q ss_pred             cccccCHHHHHHHHHhcCCEEEEecCCcCCccc---ccC-CCCC-ccEEEecCcCcCCCCc--ceEEEEcccccccCCCc
Q 017640          221 LASILPIEEIVHWSHDVGAKVLVDACQSVPHMV---VDV-QGLD-ADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPF  293 (368)
Q Consensus       221 tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~---~~~-~~~~-~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~~~  293 (368)
                      ||.++|++++.++|+.+++++|+|++|+.+...   +.. +..+ .+++++|+||.+|++|  +|++++++++++.+.+.
T Consensus       177 tG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~  256 (369)
T 3cq5_A          177 TGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANPAFIDAVMLV  256 (369)
T ss_dssp             TCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECTHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCHHHHHHHHHc
Confidence            999999999999999999999999999855421   222 2335 6799999999998777  79999999887766543


Q ss_pred             ccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          294 LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       294 ~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      ..                       ..+++.....++..+++...  .++.++++..++.+++.+.|.+.
T Consensus       257 ~~-----------------------~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~  301 (369)
T 3cq5_A          257 RL-----------------------PYHLSALSQAAAIVALRHSA--DTLGTVEKLSVERVRVAARLEEL  301 (369)
T ss_dssp             SC-----------------------TTCSCHHHHHHHHHHHHTHH--HHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             CC-----------------------CCCCCHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHHHhC
Confidence            21                       11467777777777776422  35777888888999999888763

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.95  E-value=4.8e-27  Score=221.53  Aligned_cols=259  Identities=15%  Similarity=0.134  Sum_probs=194.1

Q ss_pred             CeEEeccCCC-C-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHH
Q 017640           67 KLVYLDNAAT-S-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL  144 (368)
Q Consensus        67 ~~i~l~~~~~-~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~  144 (368)
                      .++.|..+.+ + ++++.+.+++.+.+..+........+.  .+..+...++|+.+++++|.+   +.++++++++++..
T Consensus        40 ~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~--~g~~~~~~~l~~~la~~~g~~---~~i~~~sGt~a~~~  114 (384)
T 1bs0_A           40 QYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHV--SGYSVVHQALEEELAEWLGYS---RALLFISGFAANQA  114 (384)
T ss_dssp             EEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTT--TCCCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHH
T ss_pred             eEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCCCcCcc--cCChHHHHHHHHHHHHHhCCC---cEEEeCCcHHHHHH
Confidence            3444544443 5 578999999999887642211101111  112356778999999999985   45555566899999


Q ss_pred             HHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccC---ceEEEEccccccc
Q 017640          145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRK---TKLVVIHHISNML  221 (368)
Q Consensus       145 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~---~~~v~~~~~~n~t  221 (368)
                      ++.++    +++||.|++.++.|.+...    .++..|++++.+|..     |+++|++++++.   +++|++++++|||
T Consensus       115 ~~~~~----~~~gd~v~~~~~~~~~~~~----~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~~~v~~~~~~npt  181 (384)
T 1bs0_A          115 VIAAM----MAKEDRIAADRLSHASLLE----AASLSPSQLRRFAHN-----DVTHLARLLASPCPGQQMVVTEGVFSMD  181 (384)
T ss_dssp             HHHHH----CCTTCEEEEETTCCHHHHH----HHHTSSSEEEEECTT-----CHHHHHHHHHSCCSSCEEEEEESBCTTT
T ss_pred             HHHHh----CCCCcEEEEcccccHHHHH----HHHHcCCCEEEeCCC-----CHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            99988    8899999999999887543    345569999999853     899999988753   7899999999999


Q ss_pred             ccccCHHHHHHHHHhcCCEEEEecCCcCCccc------ccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCccc
Q 017640          222 ASILPIEEIVHWSHDVGAKVLVDACQSVPHMV------VDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLG  295 (368)
Q Consensus       222 G~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~------~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~  295 (368)
                      |.++|+++|.++|++||+++|+|++|+.+...      .+....++|++++|+||.+|++| |++++++++++.+.+...
T Consensus       182 G~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G-G~~~~~~~~~~~l~~~~~  260 (384)
T 1bs0_A          182 GDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSG-AAVLCSSTVADYLLQFAR  260 (384)
T ss_dssp             CCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSCC-EEEEECHHHHHHHHHHCH
T ss_pred             CCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchhhccC-cEEEeCHHHHHHHHHhch
Confidence            99999999999999999999999999866431      11112358999999999999888 999999988776553211


Q ss_pred             CCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          296 GGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       296 g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      ++                  . ..++++.....++..+++.+.+...+.++++..++.+++.+.|.+.
T Consensus       261 ~~------------------~-~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  309 (384)
T 1bs0_A          261 HL------------------I-YSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL  309 (384)
T ss_dssp             HH------------------H-SSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             hh------------------h-cCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc
Confidence            00                  0 0125778888888888888763235678899999999999999875

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.95  E-value=1.9e-27  Score=226.22  Aligned_cols=259  Identities=17%  Similarity=0.114  Sum_probs=195.9

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHh--hccCCCCcchhhHHHHHHHHHHHHHHHHHcC------CCCCCcEEEeC
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAY--NSNVHRGIHFLSAKATDEYELARKKVAAFIN------ASDSGEIVFTK  136 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------~~~~~~v~~t~  136 (368)
                      +++++|+.+... ++++.+.+++.+.+...  ..++..          ....++|+.++++++      .++.++|++|+
T Consensus        23 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~----------~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~   92 (410)
T 3e2y_A           23 PSVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQYTRG----------FGHPALVKALSCLYGKIYQRQIDPNEEILVAV   92 (410)
T ss_dssp             TTSEECSSCCCCSCCCHHHHHHHHHHHTCGGGGSCCCT----------TCCHHHHHHHHHHHHHHHTSCCCTTTSEEEES
T ss_pred             CCeEEecCCCCCCCCCHHHHHHHHHHHhCccccCCCCC----------CChHHHHHHHHHHHHHHhCCCCCCCCCEEEeC
Confidence            578999999877 67899999999887642  111110          112256666666655      33425999999


Q ss_pred             CHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC-----------CCCCCCHHHHHHhc
Q 017640          137 NATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN-----------DDESPDLDKLKEML  205 (368)
Q Consensus       137 g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~-----------~~~~~d~~~l~~~l  205 (368)
                      |+++++..++.++    +++||+|++..|.|++..    ..++..|.+++.++++           .++.+|+++|++++
T Consensus        93 g~~~a~~~~~~~~----~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~  164 (410)
T 3e2y_A           93 GAYGSLFNSIQGL----VDPGDEVIIMVPFYDCYE----PMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKF  164 (410)
T ss_dssp             HHHHHHHHHHHHH----CCTTCEEEEEESCCTTHH----HHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTC
T ss_pred             CcHHHHHHHHHHh----cCCCCEEEEeCCCchhhH----HHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhc
Confidence            9999999999998    889999999999998854    4456679999999986           24568999999999


Q ss_pred             ccCceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCc----ccccC---C-CCCccEEEecCcCcCCC
Q 017640          206 SRKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----MVVDV---Q-GLDADFLVASSHKMCGP  274 (368)
Q Consensus       206 ~~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~----~~~~~---~-~~~~d~~~~s~~K~~g~  274 (368)
                      ++++++|++++++||||.++|   +++|.++|++||+++|+|++|+...    ...++   . ..+.++++.|+||.+|+
T Consensus       165 ~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~  244 (410)
T 3e2y_A          165 SSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSV  244 (410)
T ss_dssp             CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSC
T ss_pred             CCCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCC
Confidence            989999999999999999985   8899999999999999999998422    11111   1 22466899999999997


Q ss_pred             Cc--ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH------HHhCHHHHH
Q 017640          275 TG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL------STIGMQKIH  346 (368)
Q Consensus       275 ~G--~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~------~~~g~~~i~  346 (368)
                      +|  +|++++++++++.+......                     ...+.+.....++..+++..      ....++.++
T Consensus       245 ~G~r~G~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  303 (410)
T 3e2y_A          245 TGWKLGWSIGPAHLIKHLQTVQQN---------------------SFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLP  303 (410)
T ss_dssp             GGGCCEEEECCHHHHHHHHHHHHT---------------------TTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHH
T ss_pred             CCceEEEEEECHHHHHHHHHHHHh---------------------hccCCChHHHHHHHHHHHhhhccccchHHHHHHHH
Confidence            77  89999999988776533221                     12256777777777776631      112367888


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 017640          347 AYEVKWIICSIIVIQER  363 (368)
Q Consensus       347 ~~~~~l~~~l~~~l~~~  363 (368)
                      ++..++.+++.+.|+++
T Consensus       304 ~~~~~~~~~l~~~L~~~  320 (410)
T 3e2y_A          304 KELEVKRDRMVRLLNSV  320 (410)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHC
Confidence            88899999999999876

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.95  E-value=6.3e-27  Score=218.72  Aligned_cols=252  Identities=12%  Similarity=0.158  Sum_probs=197.7

Q ss_pred             CCCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHH
Q 017640           65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN  143 (368)
Q Consensus        65 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~  143 (368)
                      +++++.|+.+.+. ++++.+.+++.+.+.....++..           ...++|++++++++.+++ +|++|+|+++++.
T Consensus        25 ~~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~-----------~~~~l~~~la~~~~~~~~-~i~~~~g~t~al~   92 (361)
T 3ftb_A           25 GRELLDYSSNINPLGIPKSFLNNIDEGIKNLGVYPDV-----------NYRRLNKSIENYLKLKDI-GIVLGNGASEIIE   92 (361)
T ss_dssp             ---CEETTCCCCTTCSCHHHHTTHHHHHHGGGSCCCT-----------TCHHHHHHHHHHHTCCSC-EEEEESSHHHHHH
T ss_pred             CCCEEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCc-----------cHHHHHHHHHHHhCCCcc-eEEEcCCHHHHHH
Confidence            3678899988666 57899999999988765444332           124899999999998765 9999999999999


Q ss_pred             HHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEccccccccc
Q 017640          144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLAS  223 (368)
Q Consensus       144 ~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~  223 (368)
                      .++.++        |+|++.+|+|++..    ..++..|++++.++.++++.++++++++++++ +++|++++++||||.
T Consensus        93 ~~~~~~--------d~vi~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~-~~~v~i~~p~nptG~  159 (361)
T 3ftb_A           93 LSISLF--------EKILIIVPSYAEYE----INAKKHGVSVVFSYLDENMCIDYEDIISKIDD-VDSVIIGNPNNPNGG  159 (361)
T ss_dssp             HHHTTC--------SEEEEEESCCTHHH----HHHHHTTCEEEEEECCTTSCCCHHHHHHHTTT-CSEEEEETTBTTTTB
T ss_pred             HHHHHc--------CcEEEecCChHHHH----HHHHHcCCeEEEeecCcccCCCHHHHHHhccC-CCEEEEeCCCCCCCC
Confidence            998743        89999999998844    44556699999999998878899999999988 999999999999999


Q ss_pred             ccC---HHHHHHHHHhcCCEEEEecCCcCCcc-----cccC-CCCCccEEEecCcCcCCCCc--ceEEE-EcccccccCC
Q 017640          224 ILP---IEEIVHWSHDVGAKVLVDACQSVPHM-----VVDV-QGLDADFLVASSHKMCGPTG--IGFLF-GKSDLLSAMP  291 (368)
Q Consensus       224 ~~~---l~~i~~l~~~~g~~li~D~a~~~~~~-----~~~~-~~~~~d~~~~s~~K~~g~~G--~G~l~-~~~~li~~l~  291 (368)
                      ++|   +++|+++|++||+++|+|++|+....     .... ...+.++++.|+||.+|++|  +|+++ .++++++.++
T Consensus       160 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~  239 (361)
T 3ftb_A          160 LINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIK  239 (361)
T ss_dssp             CCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHH
Confidence            998   66788888899999999999983322     1111 22345688899999998777  79988 7777777665


Q ss_pred             CcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       292 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      ....                       ..+++.....++..+++.  ...++.++++..++.+++.+.|.+++++
T Consensus       240 ~~~~-----------------------~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~  289 (361)
T 3ftb_A          240 AKQN-----------------------PWNINCFAEMAAINCLKD--TNYIEESLLWIKKERKRFIEELNKIGFI  289 (361)
T ss_dssp             TTSC-----------------------TTCSCHHHHHHHHHTSSC--HHHHHHHHHHHHHHHHHHHHHHHHSSSE
T ss_pred             hhCC-----------------------CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            3321                       236788888888888774  2346788899999999999999887664

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=99.95  E-value=4.2e-27  Score=225.28  Aligned_cols=263  Identities=17%  Similarity=0.158  Sum_probs=197.9

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHH----cCCC-CCC-cEEEeCCH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAF----INAS-DSG-EIVFTKNA  138 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~----~~~~-~~~-~v~~t~g~  138 (368)
                      +++++|+.+... .+++.+.+++.+.+.......  ..+...    ....++|+.++++    +|.+ ..+ +|++|+|+
T Consensus        37 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~--~~y~~~----~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~  110 (429)
T 1yiz_A           37 YKPLNLGQGFPDYHAPKYALNALAAAANSPDPLA--NQYTRG----FGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGA  110 (429)
T ss_dssp             HCCEECCSSSCSSCCCHHHHHHHHHHHTCSCGGG--GSCCCS----SCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHH
T ss_pred             CCEEEecCCCCCCCCCHHHHHHHHHHHhccccCc--cCCCCC----CCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecCh
Confidence            467899998776 578899999988876421000  001100    1122455555555    4754 345 89999999


Q ss_pred             HHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC----------CCCCCHHHHHHhcccC
Q 017640          139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND----------DESPDLDKLKEMLSRK  208 (368)
Q Consensus       139 t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~----------~~~~d~~~l~~~l~~~  208 (368)
                      ++|+..++.++    +++||+|++.+|.|++...    .++..|.+++.++.++          ++.+|+++|+++++++
T Consensus       111 ~~a~~~~~~~~----~~~gd~Vl~~~p~y~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~  182 (429)
T 1yiz_A          111 YEALYATIQGH----VDEGDEVIIIEPFFDCYEP----MVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEK  182 (429)
T ss_dssp             HHHHHHHHHHH----CCTTCEEEEEESCCTTHHH----HHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTT
T ss_pred             HHHHHHHHHHh----cCCCCEEEEcCCCchhHHH----HHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhccC
Confidence            99999999998    7899999999999998543    3456799999999875          3578999999999888


Q ss_pred             ceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCc------ccc-cCC-CCCccEEEecCcCcCCCCc-
Q 017640          209 TKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH------MVV-DVQ-GLDADFLVASSHKMCGPTG-  276 (368)
Q Consensus       209 ~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~------~~~-~~~-~~~~d~~~~s~~K~~g~~G-  276 (368)
                      +++|++++++||||.++|   +++|.++|++||+++|+|++|+...      .++ .+. ..+.|+++.|+||.+|++| 
T Consensus       183 ~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~  262 (429)
T 1yiz_A          183 TKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGW  262 (429)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGG
T ss_pred             ceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCc
Confidence            999999999999999997   8899999999999999999998421      122 232 3468999999999999888 


Q ss_pred             -ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-----HH-HhCHHHHHHHH
Q 017640          277 -IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY-----LS-TIGMQKIHAYE  349 (368)
Q Consensus       277 -~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~-----~~-~~g~~~i~~~~  349 (368)
                       +|++++++++++.+.+...                     +..++.+.....++..+++.     .. ...++.++++.
T Consensus       263 r~G~~~~~~~~~~~l~~~~~---------------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~  321 (429)
T 1yiz_A          263 KIGWAYGPEALLKNLQMVHQ---------------------NCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGEL  321 (429)
T ss_dssp             CCEEEESCHHHHHHHHHHHH---------------------TTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHH
T ss_pred             ceEEEEeCHHHHHHHHHHHh---------------------hcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence             9999999988876654321                     11235677777777777776     21 11367888889


Q ss_pred             HHHHHHHHHHHHhh
Q 017640          350 VKWIICSIIVIQER  363 (368)
Q Consensus       350 ~~l~~~l~~~l~~~  363 (368)
                      .++.+++.+.|.+.
T Consensus       322 ~~~~~~l~~~L~~~  335 (429)
T 1yiz_A          322 MAKRDYMASFLAEV  335 (429)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999999875

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=99.95  E-value=1.3e-27  Score=224.95  Aligned_cols=261  Identities=15%  Similarity=0.077  Sum_probs=195.8

Q ss_pred             CCCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----CCC-CCC-cEEEeCC
Q 017640           65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS-DSG-EIVFTKN  137 (368)
Q Consensus        65 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~-~~~-~v~~t~g  137 (368)
                      +++++.|+.+.+. ..++.+.+++.+.+....  .  ..+.    ......++|+++++++    |.+ .++ +|++|+|
T Consensus        24 g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~--~--~~y~----~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g   95 (376)
T 2dou_A           24 GVGLIDLSIGSTDLPPPEAPLKALAEALNDPT--T--YGYC----LKSCTLPFLEEAARWYEGRYGVGLDPRREALALIG   95 (376)
T ss_dssp             TCCCEECSSCCCCCCCCHHHHHHHHHHTTCGG--G--SSCC----CHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESS
T ss_pred             CCCEEeccCCCCCCCCCHHHHHHHHHHHhCCC--c--CCCC----CCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCC
Confidence            3567888888766 467889998887764310  0  1111    1234557777777777    876 223 8999999


Q ss_pred             HHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEccc
Q 017640          138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHI  217 (368)
Q Consensus       138 ~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~  217 (368)
                      +++++..++.++    +++||+|++.+|+|++..    ..++..|++++.++.+.++.+|+++|++++++++++|+++++
T Consensus        96 ~~~a~~~~~~~l----~~~gd~vl~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p  167 (376)
T 2dou_A           96 SQEGLAHLLLAL----TEPEDLLLLPEVAYPSYF----GAARVASLRTFLIPLREDGLADLKAVPEGVWREAKVLLLNYP  167 (376)
T ss_dssp             HHHHHHHHHHHH----CCTTCEEEEESSCCHHHH----HHHHHTTCEEEEECBCTTSSBCGGGSCHHHHHHEEEEEECSS
T ss_pred             cHHHHHHHHHHh----cCCCCEEEECCCCcHhHH----HHHHHcCCEEEEeeCCCCCCCCHHHHHHhhccCceEEEECCC
Confidence            999999999998    789999999999888844    445667999999998444568999999988878899999999


Q ss_pred             ccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc---c---ccC-CCCCccEEEecCcCcCCCCc--ceEEEEccc
Q 017640          218 SNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---V---VDV-QGLDADFLVASSHKMCGPTG--IGFLFGKSD  285 (368)
Q Consensus       218 ~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~---~---~~~-~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~  285 (368)
                      +||||.++|   +++|.++|++||+++|+|++|+....   +   ++. +..+.+++++|+||.+|++|  +|+++++++
T Consensus       168 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~  247 (376)
T 2dou_A          168 NNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGSEE  247 (376)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEECHH
T ss_pred             CCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhheeEEEecCHH
Confidence            999999998   67899999999999999999985321   1   222 22356799999999998777  799999998


Q ss_pred             ccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          286 LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       286 li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +++.+......+                     ..+.+.....++..+++... ..++.++++..++.+++.+.|.+.
T Consensus       248 ~~~~l~~~~~~~---------------------~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~  303 (376)
T 2dou_A          248 ALARLERVKGVI---------------------DFNQYAGVLRMGVEALKTPK-EVVRGYARVYRERALGMAEALKGV  303 (376)
T ss_dssp             HHHHHHHHHHHH---------------------CCCSCHHHHHHHHHHHTSCH-HHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhc---------------------ccCCCHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            887765432211                     12456677777767766432 236777888888888888888764

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=99.95  E-value=2.5e-27  Score=226.29  Aligned_cols=266  Identities=12%  Similarity=0.125  Sum_probs=196.9

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC--CCCcEEEeCCHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS--DSGEIVFTKNATEAI  142 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~--~~~~v~~t~g~t~a~  142 (368)
                      ++.++|+.+... ++++.+.+++.+.+..... .  ..+....+..+..+.+.+.+.+.+|.+  ++++|++|+|+++++
T Consensus        28 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~-~--~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~  104 (422)
T 3fvs_A           28 HDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFM-L--NQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGAL  104 (422)
T ss_dssp             SCCEECCCSSCSSCCCHHHHHHHHHHHHSCGG-G--GSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHH
T ss_pred             CCceEeCCCCCCCCCCHHHHHHHHHHHhCCCc-c--CCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHH
Confidence            567999998877 6789999999988875210 0  001111111333334444444444443  314899999999999


Q ss_pred             HHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC------------CCCCCHHHHHHhcccCce
Q 017640          143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND------------DESPDLDKLKEMLSRKTK  210 (368)
Q Consensus       143 ~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~------------~~~~d~~~l~~~l~~~~~  210 (368)
                      ..++.++    +++||+|++.+|+|++..    ..++..|.+++.+++++            ++.+|+++|+++++++++
T Consensus       105 ~~~~~~~----~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~~~~  176 (422)
T 3fvs_A          105 FTAFQAL----VDEGDEVIIIEPFFDCYE----PMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTK  176 (422)
T ss_dssp             HHHHHHH----CCTTCEEEEEESCCTTHH----HHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCTTEE
T ss_pred             HHHHHHH----cCCCCEEEEcCCCchhhH----HHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcCCCce
Confidence            9999998    899999999999998844    44566799999999876            346899999999999999


Q ss_pred             EEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCC----cccccC---C-CCCccEEEecCcCcCCCCc--c
Q 017640          211 LVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVP----HMVVDV---Q-GLDADFLVASSHKMCGPTG--I  277 (368)
Q Consensus       211 ~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~----~~~~~~---~-~~~~d~~~~s~~K~~g~~G--~  277 (368)
                      +|++++++||||.++|   +++|.++|++||+++|+|++|+..    ....++   . ..+.++++.|+||.+|++|  +
T Consensus       177 ~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~  256 (422)
T 3fvs_A          177 ALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKV  256 (422)
T ss_dssp             EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCC
T ss_pred             EEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCccceE
Confidence            9999999999999996   889999999999999999999852    211122   1 1356689999999998777  8


Q ss_pred             eEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH------HhCHHHHHHHHHH
Q 017640          278 GFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS------TIGMQKIHAYEVK  351 (368)
Q Consensus       278 G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~------~~g~~~i~~~~~~  351 (368)
                      |++++++++++.+......                     ...+.+.....++..+++...      ...++.++++..+
T Consensus       257 G~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~  315 (422)
T 3fvs_A          257 GWVLGPDHIMKHLRTVHQN---------------------SVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQR  315 (422)
T ss_dssp             EEEECCHHHHHHHHHHHHT---------------------TTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHH
T ss_pred             EEEEeCHHHHHHHHHHHhh---------------------ccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHH
Confidence            9999999888766533221                     122567777777777776411      1236788889999


Q ss_pred             HHHHHHHHHHhh
Q 017640          352 WIICSIIVIQER  363 (368)
Q Consensus       352 l~~~l~~~l~~~  363 (368)
                      +.+++.+.|.++
T Consensus       316 ~~~~l~~~L~~~  327 (422)
T 3fvs_A          316 CRDHMIRSLQSV  327 (422)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHc
Confidence            999999999876

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.95  E-value=1.4e-27  Score=227.60  Aligned_cols=266  Identities=18%  Similarity=0.175  Sum_probs=199.1

Q ss_pred             CCeEEeccCCC-----CCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcC------------CCC
Q 017640           66 KKLVYLDNAAT-----SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN------------ASD  128 (368)
Q Consensus        66 ~~~i~l~~~~~-----~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------------~~~  128 (368)
                      +++++|+.+..     .++++.+.+++.+.+.......    +..    .....++|++++++++            .++
T Consensus        33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~----y~~----~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~  104 (416)
T 1bw0_A           33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNG----YFP----TVGSPEAREAVATWWRNSFVHKEELKSTIVK  104 (416)
T ss_dssp             SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSS----CCC----TTCCHHHHHHHHHHHHHHHCCSTTTGGGCCG
T ss_pred             CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCC----cCC----CCCCHHHHHHHHHHHHhhhcccccCCCCCCc
Confidence            56799998873     4678999999998876421111    100    1223478888888887            444


Q ss_pred             CCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC--CCCCHHHHHHhcc
Q 017640          129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLS  206 (368)
Q Consensus       129 ~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~l~  206 (368)
                       ++|++|+|+++++.+++.++    +++||+|++.+|+|++..    ..++..|++++.++++++  +.+|+++|+++++
T Consensus       105 -~~v~~~~g~~~al~~~~~~l----~~~gd~vl~~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~  175 (416)
T 1bw0_A          105 -DNVVLCSGGSHGILMAITAI----CDAGDYALVPQPGFPHYE----TVCKAYGIGMHFYNCRPENDWEADLDEIRRLKD  175 (416)
T ss_dssp             -GGEEEESHHHHHHHHHHHHH----CCTTCEEEEEESCCTHHH----HHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCC
T ss_pred             -ceEEEeCChHHHHHHHHHHh----CCCCCEEEEcCCCcHhHH----HHHHHcCcEEEEeecCcccCCCCCHHHHHHHhc
Confidence             49999999999999999998    789999999999998844    445667999999998653  6689999999999


Q ss_pred             cCceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcC----Cc----ccccCC---CCCccEEEecCcCcC
Q 017640          207 RKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSV----PH----MVVDVQ---GLDADFLVASSHKMC  272 (368)
Q Consensus       207 ~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~----~~----~~~~~~---~~~~d~~~~s~~K~~  272 (368)
                      ++++++++++++||||.++|   +++|.++|++||+++|+|++|+.    +.    ...++.   ..+.+++++|+||.|
T Consensus       176 ~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~  255 (416)
T 1bw0_A          176 DKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNL  255 (416)
T ss_dssp             TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTT
T ss_pred             cCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhC
Confidence            88999999999999999999   89999999999999999999985    22    111222   223467889999998


Q ss_pred             CCCc--ceEEEEccc--ccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHH
Q 017640          273 GPTG--IGFLFGKSD--LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAY  348 (368)
Q Consensus       273 g~~G--~G~l~~~~~--li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~  348 (368)
                      +.+|  +|+++++++  +++.+......                  .....++++....+++..+++......++.+.++
T Consensus       256 ~~~Glr~G~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  317 (416)
T 1bw0_A          256 VVPGWRLGWLLYVDPHGNGPSFLEGLKR------------------VGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAK  317 (416)
T ss_dssp             SCGGGCCEEEEEECTTCSCHHHHHHHHH------------------HHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred             CCCCceEEEEEeeCchhhHHHHHHHHHH------------------HhccccCCCcHHHHHHHHHHhcccHHHHHHHHHH
Confidence            8777  899998874  55433311100                  0001236777778888777774333457788889


Q ss_pred             HHHHHHHHHHHHHhhcCC
Q 017640          349 EVKWIICSIIVIQERHNT  366 (368)
Q Consensus       349 ~~~l~~~l~~~l~~~~g~  366 (368)
                      .+++.+++.+.|.+++|+
T Consensus       318 ~~~~~~~l~~~L~~~~g~  335 (416)
T 1bw0_A          318 IEESAMYLYNHIGECIGL  335 (416)
T ss_dssp             HHHHHHHHHHHHTTSTTE
T ss_pred             HHHHHHHHHHHHHhCCCC
Confidence            999999999999876554

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.95  E-value=1.5e-27  Score=226.43  Aligned_cols=282  Identities=19%  Similarity=0.244  Sum_probs=205.1

Q ss_pred             hhhcCCCCcccccc-c-CCCCeE-EeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc
Q 017640           49 HITRPDFPILHQEV-Y-GSKKLV-YLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI  124 (368)
Q Consensus        49 ~~~r~~f~~~~~~~-~-~~~~~i-~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~  124 (368)
                      ..+|++||.+.... + .|++++ |+++...+ +.++.+.+++.+.+..+..+++.  +...+...+...++|+.+++++
T Consensus        27 ~~~~~~fp~~~~~~~~~~g~~~i~~~~~~~~~~~~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~la~~~  104 (401)
T 2bwn_A           27 EREKGAFPKAQWNRPDGGKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGG--TRNISGTTAYHRRLEAEIAGLH  104 (401)
T ss_dssp             EECTTSTTEEEEECTTSCEEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCS--BTTTBCCBHHHHHHHHHHHHHT
T ss_pred             hcccccccceecccccCCCCcEEEeeCCCcccCCCCHHHHHHHHHHHHHcCCCCCC--cCcccCChHHHHHHHHHHHHHh
Confidence            34688999774321 0 023333 44433324 24678999999999876554431  1212223456778999999999


Q ss_pred             CCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHh
Q 017640          125 NASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEM  204 (368)
Q Consensus       125 ~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~  204 (368)
                      |.+  ++|++++|++ ++..++..+.  ...+||+|++..++|++....+    +..|++++.++.+     |+++|++.
T Consensus       105 ~~~--~~i~~~sG~~-a~~~~~~~l~--~~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~-----d~~~le~~  170 (401)
T 2bwn_A          105 QKE--AALVFSSAYN-ANDATLSTLR--VLFPGLIIYSDSLNHASMIEGI----KRNAGPKRIFRHN-----DVAHLREL  170 (401)
T ss_dssp             TCS--EEEEESCHHH-HHHHHHHHHH--HHSTTCEEEEETTCCHHHHHHH----HHSCCCEEEECTT-----CHHHHHHH
T ss_pred             CCC--cEEEECCcHH-HHHHHHHHHh--cCCCCCEEEECchhhHHHHHHH----HHcCCeEEEEcCC-----CHHHHHHH
Confidence            974  4788877765 7777766541  1358999999999999876544    4569999999975     78889888


Q ss_pred             cc----cCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCccc-----c-cCCC--CCccEEEecCcCcC
Q 017640          205 LS----RKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMV-----V-DVQG--LDADFLVASSHKMC  272 (368)
Q Consensus       205 l~----~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~-----~-~~~~--~~~d~~~~s~~K~~  272 (368)
                      ++    +++++|++++++||||.+.|+++|.++|++||+++|+|++|+.|...     + ....  .+.|++++|++|.+
T Consensus       171 l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~  250 (401)
T 2bwn_A          171 IAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAY  250 (401)
T ss_dssp             HHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTT
T ss_pred             HHhhccCCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhc
Confidence            86    57899999999999999999999999999999999999999955321     0 1111  13689999999999


Q ss_pred             CCCcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Q 017640          273 GPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKW  352 (368)
Q Consensus       273 g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l  352 (368)
                      |.+| |+++.++++++.+.....+                  .++..++++ ..++++..+++++.+.|++.++++..++
T Consensus       251 ~~~G-G~~~~~~~~~~~l~~~~~~------------------~~~~~~~~~-~~~~a~~~al~~~~~~~~~~~~~~~~~~  310 (401)
T 2bwn_A          251 GVFG-GYIAASARMVDAVRSYAPG------------------FIFSTSLPP-AIAAGAQASIAFLKTAEGQKLRDAQQMH  310 (401)
T ss_dssp             CSCC-EEEEECHHHHHHHHHHCHH------------------HHTSBCCCH-HHHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred             cCCC-CEEecCHHHHHHHHHhCcC------------------ceecCCCCH-HHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            9877 9999988877654421110                  123344555 7778888899988776778999999999


Q ss_pred             HHHHHHHHHhhcCCC
Q 017640          353 IICSIIVIQERHNTT  367 (368)
Q Consensus       353 ~~~l~~~l~~~~g~t  367 (368)
                      .+++.+.|.+. |++
T Consensus       311 ~~~l~~~L~~~-g~~  324 (401)
T 2bwn_A          311 AKVLKMRLKAL-GMP  324 (401)
T ss_dssp             HHHHHHHHHHH-TCC
T ss_pred             HHHHHHHHHHC-CCc
Confidence            99999999887 654

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=99.95  E-value=3.3e-27  Score=225.62  Aligned_cols=265  Identities=13%  Similarity=0.069  Sum_probs=203.1

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC-CCCcEEEeCCHHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-DSGEIVFTKNATEAIN  143 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~~v~~t~g~t~a~~  143 (368)
                      ++++.|..+... +.++.+.+++.+.+.... .      .++....+..+++++.+++.++.+ ..++|++|+|+++|+.
T Consensus        61 ~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~-~------~y~~~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~  133 (421)
T 3l8a_A           61 PELLQMWVADMDFLPVPEIKEAIINYGREHI-F------GYNYFNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAIS  133 (421)
T ss_dssp             TTCEECCSSCCCSCCCHHHHHHHHHHHHHCC-S------SCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHH
T ss_pred             CCeeecccCCCCCCCCHHHHHHHHHHHhcCC-c------CCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHH
Confidence            567888777655 678999999998887521 0      111111566778888888888843 2248999999999999


Q ss_pred             HHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC-CC--CCCCHHHHHHhcc-cCceEEEEccccc
Q 017640          144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN-DD--ESPDLDKLKEMLS-RKTKLVVIHHISN  219 (368)
Q Consensus       144 ~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~-~~--~~~d~~~l~~~l~-~~~~~v~~~~~~n  219 (368)
                      .++.++    .++||+|++.+|.|++..    ..++..|.+++.+|++ .+  +.+|+++|+++++ +++++|++++++|
T Consensus       134 ~a~~~~----~~~gd~Vi~~~~~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~n  205 (421)
T 3l8a_A          134 IALQAF----SEKGDAVLINSPVYYPFA----RTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHN  205 (421)
T ss_dssp             HHHHHH----SCTEEEEEEEESCCHHHH----HHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBT
T ss_pred             HHHHHh----cCCCCEEEECCCCcHHHH----HHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCC
Confidence            999998    789999999999988854    3445669999999986 33  4689999999998 7899999999999


Q ss_pred             ccccccC---HHHHHHHHHhcCCEEEEecCCcCCc----c--cc-cC--CCCCccEEEecCcCcCCCCc--ceEEEEc-c
Q 017640          220 MLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----M--VV-DV--QGLDADFLVASSHKMCGPTG--IGFLFGK-S  284 (368)
Q Consensus       220 ~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~----~--~~-~~--~~~~~d~~~~s~~K~~g~~G--~G~l~~~-~  284 (368)
                      |||.++|   +++|.++|++||+++|+|++|+...    .  ++ .+  +..+.++++.|++|.+|++|  +|+++++ +
T Consensus       206 ptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~  285 (421)
T 3l8a_A          206 PGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNE  285 (421)
T ss_dssp             TTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSH
T ss_pred             CCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCH
Confidence            9999965   8899999999999999999998421    1  11 11  12356689999999988777  7999998 7


Q ss_pred             cccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhc
Q 017640          285 DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERH  364 (368)
Q Consensus       285 ~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~  364 (368)
                      ++++.+.+...                    .+..++++..+++++.++++...+ .++.+.++..++.+++.+.|++.+
T Consensus       286 ~l~~~~~~~~~--------------------~~~~~~~n~~~~~a~~aal~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~  344 (421)
T 3l8a_A          286 SLRRKFQYRQL--------------------ANNQHEVPTVGMIATQAAFQYGKP-WLEELKTVIEGNIKLVIKELEAKT  344 (421)
T ss_dssp             HHHHHHHHHHH--------------------HTTCSCCCHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHH--------------------hcccCCCCHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhCC
Confidence            77766654331                    112347888888888888875433 367888999999999999998876


Q ss_pred             CC
Q 017640          365 NT  366 (368)
Q Consensus       365 g~  366 (368)
                      ++
T Consensus       345 ~i  346 (421)
T 3l8a_A          345 KI  346 (421)
T ss_dssp             SC
T ss_pred             Cc
Confidence            54

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=99.95  E-value=4e-27  Score=223.19  Aligned_cols=261  Identities=13%  Similarity=0.055  Sum_probs=195.7

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHH----cC--CCCCCcEEEeCCH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAF----IN--ASDSGEIVFTKNA  138 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~----~~--~~~~~~v~~t~g~  138 (368)
                      +++++|+.+..+ ++++.+.+++.+.+... ..    .+...      ..++|+.++++    +|  .++ ++|++|+|+
T Consensus        31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~----~y~~~------~~~l~~~la~~l~~~~g~~~~~-~~v~~t~g~   98 (399)
T 1c7n_A           31 NEVVPLSVADMEFKNPPELIEGLKKYLDET-VL----GYTGP------TEEYKKTVKKWMKDRHQWDIQT-DWIINTAGV   98 (399)
T ss_dssp             TTCCCCCSSSCSSCCCHHHHHHHHHHHHHC-CC----SSBCC------CHHHHHHHHHHHHHHHCCCCCG-GGEEEESSH
T ss_pred             CCceeeeecCCCCCCCHHHHHHHHHHHhcC-CC----CCCCC------cHHHHHHHHHHHHHHhCCCCCh-hhEEEcCCH
Confidence            356788887765 56889999998887641 01    11111      23556666655    47  334 489999999


Q ss_pred             HHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC-CC--CCCCHHHHHHhcc-cCceEEEE
Q 017640          139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN-DD--ESPDLDKLKEMLS-RKTKLVVI  214 (368)
Q Consensus       139 t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~-~~--~~~d~~~l~~~l~-~~~~~v~~  214 (368)
                      ++|+..++.++    +++||+|++.+|+|++..    ..++..|++++.++.+ ++  +.+|+++|+++++ +++++|++
T Consensus        99 ~~a~~~~~~~l----~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~  170 (399)
T 1c7n_A           99 VPAVFNAVREF----TKPGDGVIIITPVYYPFF----MAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLF  170 (399)
T ss_dssp             HHHHHHHHHHH----CCTTCEEEECSSCCTHHH----HHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEE
T ss_pred             HHHHHHHHHHh----cCCCCEEEEcCCCcHhHH----HHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEE
Confidence            99999999998    789999999999998854    3455679999999885 33  3589999999998 68899999


Q ss_pred             cccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc----cccCCC-----CCccEEEecCcCcCCCCc--ceEE
Q 017640          215 HHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VVDVQG-----LDADFLVASSHKMCGPTG--IGFL  280 (368)
Q Consensus       215 ~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~----~~~~~~-----~~~d~~~~s~~K~~g~~G--~G~l  280 (368)
                      ++++||||.++|   +++|.++|++||+++|+|++|+....    ..++..     .+.++++.|+||.+|++|  +|++
T Consensus       171 ~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~  250 (399)
T 1c7n_A          171 CSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNI  250 (399)
T ss_dssp             ESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEE
T ss_pred             cCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhccccchheEEE
Confidence            999999999999   89999999999999999999985321    122221     246789999999998777  7999


Q ss_pred             EEc-ccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 017640          281 FGK-SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIV  359 (368)
Q Consensus       281 ~~~-~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~  359 (368)
                      +++ +++++.+.+....                    +..++++.....++..+++... ..++.++++..++.+++.+.
T Consensus       251 ~~~~~~~~~~l~~~~~~--------------------~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~  309 (399)
T 1c7n_A          251 IIKNPDIRERFTKSRDA--------------------TSGMPFTTLGYKACEICYKECG-KWLDGCIKVIDKNQRIVKDF  309 (399)
T ss_dssp             ECCCHHHHHHHHHHHHH--------------------TTCCCCCHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             EECCHHHHHHHHHHHhh--------------------cccCCCCHHHHHHHHHHHhCCh-HHHHHHHHHHHHHHHHHHHH
Confidence            997 4577766543321                    1123567777777777776432 24678888899999999999


Q ss_pred             HHh-hcCCC
Q 017640          360 IQE-RHNTT  367 (368)
Q Consensus       360 l~~-~~g~t  367 (368)
                      |.+ ++|++
T Consensus       310 L~~~~~~~~  318 (399)
T 1c7n_A          310 FEVNHPEIK  318 (399)
T ss_dssp             HHHHCTTSB
T ss_pred             HHhhCCCCe
Confidence            988 56653

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.95  E-value=8.1e-27  Score=220.83  Aligned_cols=261  Identities=16%  Similarity=0.110  Sum_probs=198.9

Q ss_pred             CCeEEeccCCC-C-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHH
Q 017640           66 KKLVYLDNAAT-S-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN  143 (368)
Q Consensus        66 ~~~i~l~~~~~-~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~  143 (368)
                      +.++.|..+.+ + +.++.+.+++.+.+..+. .+.. .+...++..+...++++.+++++|.+  +.+++ +++++++.
T Consensus        43 ~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~-~~~~-~~~~~~g~~~~~~~l~~~la~~~~~~--~~i~~-~sGt~a~~  117 (399)
T 3tqx_A           43 KEVLNFCANNYLGLADHPALIKTAQTVVEQYG-FGMA-SVRFICGTQTIHKELEKDISEFLGTD--DTILY-SSCFDANG  117 (399)
T ss_dssp             EEEEECSSCCTTSCTTCHHHHHHHHHHHHHHC-SCCC-SCCCCCCCBHHHHHHHHHHHHHHTCS--EEEEE-SCHHHHHH
T ss_pred             eeEEEeeccCcccccCCHHHHHHHHHHHHHhC-CCCC-CcCccccCchHHHHHHHHHHHHHCCC--cEEEE-CchHHHHH
Confidence            34555555543 3 357999999999888743 2111 11111223466778999999999986  24444 55588999


Q ss_pred             HHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc------CceEEEEccc
Q 017640          144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR------KTKLVVIHHI  217 (368)
Q Consensus       144 ~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~  217 (368)
                      .++.++    +++||.|++..|+|++..    ..++..|.+++.++..     |+++|++.+++      ++++|+++++
T Consensus       118 ~~l~~~----~~~gd~v~~~~~~~~~~~----~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~~~~~~v~~~~~  184 (399)
T 3tqx_A          118 GLFETL----LGPEDAIISDELNHASII----DGIRLCKAQRYRYKNN-----AMGDLEAKLKEADEKGARFKLIATDGV  184 (399)
T ss_dssp             TTHHHH----CCTTCEEEEETTCCHHHH----HHHHSCCSEEEEECTT-----CTTHHHHHHHHHHTTTCSSEEEEEESE
T ss_pred             HHHHHh----cCCCCEEEECCcccHHHH----HHHHHcCCceeEeCCC-----CHHHHHHHHHhhhccCCCceEEEEeCC
Confidence            999988    899999999999998854    3456679999999864     78888888876      7899999999


Q ss_pred             ccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccc------cCCC--CCccEEEecCcCcCC-CCcceEEEEcccccc
Q 017640          218 SNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVV------DVQG--LDADFLVASSHKMCG-PTGIGFLFGKSDLLS  288 (368)
Q Consensus       218 ~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~------~~~~--~~~d~~~~s~~K~~g-~~G~G~l~~~~~li~  288 (368)
                      +||||.++|+++|.++|++||+++|+|++|+.+....      +...  .++|++++|+||.+| ++| |++++++++++
T Consensus       185 ~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~~~~~~~~  263 (399)
T 3tqx_A          185 FSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGASG-GYTSGHKEIIE  263 (399)
T ss_dssp             ETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSSCC-EEEEECHHHHH
T ss_pred             CCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccCce-EEEEcCHHHHH
Confidence            9999999999999999999999999999997654321      1111  267999999999887 877 99999999887


Q ss_pred             cCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          289 AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       289 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      .+......+                  . ..++.+...++++..+++... .+.+.++++..++.+++.+.|.+. |+
T Consensus       264 ~~~~~~~~~------------------~-~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-g~  320 (399)
T 3tqx_A          264 WLRNRSRPY------------------L-FSNTVAPVIVATSLKVLELLK-TEGPQLRKQLQENSRYFRAGMEKL-GF  320 (399)
T ss_dssp             HHHHHCHHH------------------H-SSCCCCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHH-TC
T ss_pred             HHHHhCcce------------------e-ccCCCcHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHc-CC
Confidence            765432110                  1 134788888888888888775 468899999999999999999876 44

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.95  E-value=1.5e-26  Score=218.71  Aligned_cols=261  Identities=11%  Similarity=0.081  Sum_probs=192.9

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHH-HHHHHHHHc----C--CCCCCcEEEeCC
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYEL-ARKKVAAFI----N--ASDSGEIVFTKN  137 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~r~~la~~~----~--~~~~~~v~~t~g  137 (368)
                      +++++|+.+..+ .+++.+.+++.+.+... ..    .+...      ..+ +|+.+++++    |  .++ ++|++|+|
T Consensus        28 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~----~y~~~------~~~~lr~~la~~l~~~~g~~~~~-~~v~~t~g   95 (390)
T 1d2f_A           28 ADLLPFTISDMDFATAPCIIEALNQRLMHG-VF----GYSRW------KNDEFLAAIAHWFSTQHYTAIDS-QTVVYGPS   95 (390)
T ss_dssp             --CEECCSSSCSSCCCHHHHHHHHHHHTTC-CC----CCCCS------CCHHHHHHHHHHHHHHSCCCCCG-GGEEEESC
T ss_pred             CCeeEeeecCCCCCCCHHHHHHHHHHHhCC-CC----CCCCC------ChHHHHHHHHHHHHHhcCCCCCH-HHEEEcCC
Confidence            467888887765 57889999998887531 00    11110      224 666666654    6  334 48999999


Q ss_pred             HHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC---CCCCHHHHHHhccc-CceEEE
Q 017640          138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD---ESPDLDKLKEMLSR-KTKLVV  213 (368)
Q Consensus       138 ~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~---~~~d~~~l~~~l~~-~~~~v~  213 (368)
                      +++++.+++.++    +++||+|++.+|+|++..    ..++..|++++.++.+++   +.+|+++|++++++ ++++|+
T Consensus        96 ~~~al~~~~~~l----~~~gd~vl~~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~  167 (390)
T 1d2f_A           96 VIYMVSELIRQW----SETGEGVVIHTPAYDAFY----KAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIML  167 (390)
T ss_dssp             HHHHHHHHHHHS----SCTTCEEEEEESCCHHHH----HHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEE
T ss_pred             HHHHHHHHHHHh----cCCCCEEEEcCCCcHHHH----HHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEE
Confidence            999999999998    789999999999888854    445567999999998643   35899999999986 789999


Q ss_pred             EcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc----cccCCCCC---ccEEEecCcCcCCCCc--ceEEE
Q 017640          214 IHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VVDVQGLD---ADFLVASSHKMCGPTG--IGFLF  281 (368)
Q Consensus       214 ~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~----~~~~~~~~---~d~~~~s~~K~~g~~G--~G~l~  281 (368)
                      +++++||||.++|   +++|.++|++||+++|+|++|+....    ..++....   .|. +.|+||.+|++|  +|+++
T Consensus       168 l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~r~G~~~  246 (390)
T 1d2f_A          168 LCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKSFNIPALTGAYGI  246 (390)
T ss_dssp             EESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHHHTCGGGCCEEEE
T ss_pred             EeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHhhcccChhheEEE
Confidence            9999999999999   88999999999999999999985321    12222222   266 999999998777  79999


Q ss_pred             Ec-ccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Q 017640          282 GK-SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVI  360 (368)
Q Consensus       282 ~~-~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l  360 (368)
                      ++ +++++.+.+...|                   .+..++++.....++..+++...+ .++.++++..++.+++.+.|
T Consensus       247 ~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L  306 (390)
T 1d2f_A          247 IENSSSRDAYLSALKG-------------------RDGLSSPSVLALTAHIAAYQQGAP-WLDALRIYLKDNLTYIADKM  306 (390)
T ss_dssp             ECSHHHHHHHHHHHHT-------------------TSCCCSCCHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             ECCHHHHHHHHHHHhh-------------------hcccCCCCHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHHH
Confidence            86 5776665533220                   111236788888777777775333 36778888999999999999


Q ss_pred             Hh-hcCCC
Q 017640          361 QE-RHNTT  367 (368)
Q Consensus       361 ~~-~~g~t  367 (368)
                      .+ ++|++
T Consensus       307 ~~~~~~~~  314 (390)
T 1d2f_A          307 NAAFPELN  314 (390)
T ss_dssp             HHHCSSCC
T ss_pred             HhhCCCCE
Confidence            88 56654

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.95  E-value=2.1e-26  Score=223.41  Aligned_cols=286  Identities=15%  Similarity=0.089  Sum_probs=203.5

Q ss_pred             CCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHH
Q 017640           66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV  145 (368)
Q Consensus        66 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~  145 (368)
                      ...++|+ +...+..+.+.+++.+....+  +++ .....+.+..+...++++.+++++|.+.  .+++++|+++++..+
T Consensus        66 ~~~~~lg-~~~~~~~p~v~~~~~~~~~~~--~~~-~~~~~~~g~~~l~~~l~~~la~~~g~~~--~~~~~~ggt~a~~~a  139 (474)
T 1wyu_B           66 TTFYPLG-SCTMKYNPKLHEEAARLFADL--HPY-QDPRTAQGALRLMWELGEYLKALTGMDA--ITLEPAAGAHGELTG  139 (474)
T ss_dssp             TSCCCBT-TTCCCCCCHHHHHHHHTTSSC--CTT-SCGGGCHHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHHHH
T ss_pred             cCccccc-cccccCCHHHHHHHHHHHHhc--CCC-CchhhChHHHHHHHHHHHHHHHHHCCCc--eeecChHHHHHHHHH
Confidence            3567888 555555566666665542221  222 1111356678889999999999999873  567889999999986


Q ss_pred             HHHccCCCCCCCC-----EEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccc
Q 017640          146 AYSWGLSNLKSGD-----EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNM  220 (368)
Q Consensus       146 ~~~~~~~~~~~gd-----~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~  220 (368)
                      +.++.....++||     +|+++++.|+++..    .++..|++++.|+.++++.+|+++|++++++++++|+++++ |+
T Consensus       140 l~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~----~~~~~G~~vv~v~~~~~~~~d~~~L~~~i~~~t~~v~~~~p-n~  214 (474)
T 1wyu_B          140 ILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPA----TASMAGYQVREIPSGPEGEVDLEALKRELGPHVAALMLTNP-NT  214 (474)
T ss_dssp             HHHHHHHHHHTTCTTTCCEEEEETTSCTHHHH----HHHHTTCEEEEECBCTTSSBCHHHHHHHCSTTEEEEEECSS-CT
T ss_pred             HHHHHHHHHhcCCccCCCEEEEeCCcChhhHH----HHHHCCCEEEEecCCCCCCcCHHHHHHhhCCCceEEEEECC-CC
Confidence            6554110124666     99999999988553    35667999999999888999999999999999999999997 68


Q ss_pred             cccc-cCHHHHHHHHHhcCCEEEEecCCcCCcc-cccCCCCCccEEEecCcCcCCCC------cceEEEEcccccccCC-
Q 017640          221 LASI-LPIEEIVHWSHDVGAKVLVDACQSVPHM-VVDVQGLDADFLVASSHKMCGPT------GIGFLFGKSDLLSAMP-  291 (368)
Q Consensus       221 tG~~-~~l~~i~~l~~~~g~~li~D~a~~~~~~-~~~~~~~~~d~~~~s~~K~~g~~------G~G~l~~~~~li~~l~-  291 (368)
                      +|.+ .++++|.++|++||+++|+|++|+.+.. ..+...+++|++++|+||+|+.+      |+|++++++++++.+. 
T Consensus       215 ~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g~~~~~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~  294 (474)
T 1wyu_B          215 LGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPV  294 (474)
T ss_dssp             TSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCS
T ss_pred             CcccCCCHHHHHHHHHHcCCEEEEeCchhhhhccCCCcccCCCcEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCCC
Confidence            9998 6899999999999999999999975543 22333457999999999977533      5899999999988876 


Q ss_pred             Cccc-CCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          292 PFLG-GGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       292 ~~~~-g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      +... ++..  +.. .. .......++..++.+...+.++...++.+...+++.+.++..++++++.+.|.+. |++
T Consensus       295 ~~~~~~g~~--~~~-~~-~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~-g~~  366 (474)
T 1wyu_B          295 PLVERGEEG--FYL-DF-DRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK-GYR  366 (474)
T ss_dssp             CEEEECSSC--EEE-EC-CCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCB
T ss_pred             CeeeccCCe--eEe-cc-cCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcE
Confidence            3221 1111  000 00 1111123445556666555555555554444567777899999999999999886 654

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=99.95  E-value=8.7e-27  Score=220.57  Aligned_cols=262  Identities=16%  Similarity=0.149  Sum_probs=197.0

Q ss_pred             CCCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC--CCC-cEEEeCCHHH
Q 017640           65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS--DSG-EIVFTKNATE  140 (368)
Q Consensus        65 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~--~~~-~v~~t~g~t~  140 (368)
                      +++++.|+.+... +.++.+.+++.+.+.....++...      +..+..+.+.+.+.+.+|.+  .++ +|++|+|+++
T Consensus        29 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~------g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~  102 (396)
T 3jtx_A           29 GMEAVPLHIGEPKHPTPKVITDALTASLHELEKYPLTA------GLPELRQACANWLKRRYDGLTVDADNEILPVLGSRE  102 (396)
T ss_dssp             TCCCEECSCCSCCSCCCHHHHHHHHHTGGGGGSCCCTT------CCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHH
T ss_pred             CCCeEEeCCcCCCCCCCHHHHHHHHHHhhhccCCCCCC------CcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHH
Confidence            4778999998877 578899999988775443333211      11344444555555555753  235 8999999999


Q ss_pred             HHHHHHHHccCCCCCCC-----CEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC-CCCCHHHHHHhcccCceEEEE
Q 017640          141 AINLVAYSWGLSNLKSG-----DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSRKTKLVVI  214 (368)
Q Consensus       141 a~~~~~~~~~~~~~~~g-----d~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~l~~~~~~v~~  214 (368)
                      ++..++.++    +++|     |+|++.+|+|++.    ...++..|++++.++++++ +.+|+++|++++++++++|++
T Consensus       103 al~~~~~~~----~~~g~~~~~d~vl~~~p~~~~~----~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~~~~~v~l  174 (396)
T 3jtx_A          103 ALFSFVQTV----LNPVSDGIKPAIVSPNPFYQIY----EGATLLGGGEIHFANCPAPSFNPDWRSISEEVWKRTKLVFV  174 (396)
T ss_dssp             HHHHHHHHH----CCC---CCCCEEEEEESCCHHH----HHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHTEEEEEE
T ss_pred             HHHHHHHHH----hCCCCccCCCEEEEcCCCcHhH----HHHHHHcCCEEEEeecCCCCCccCHHHHHHhhccCcEEEEE
Confidence            999999998    7786     7999999988874    4455677999999998654 568999999999889999999


Q ss_pred             cccccccccccCHH---HHHHHHHhcCCEEEEecCCcCCcc----cccC--------CCCCccEEEecCcCcCCCCc--c
Q 017640          215 HHISNMLASILPIE---EIVHWSHDVGAKVLVDACQSVPHM----VVDV--------QGLDADFLVASSHKMCGPTG--I  277 (368)
Q Consensus       215 ~~~~n~tG~~~~l~---~i~~l~~~~g~~li~D~a~~~~~~----~~~~--------~~~~~d~~~~s~~K~~g~~G--~  277 (368)
                      ++++||||.++|.+   +|.++|++||+++|+|++|+....    +...        ...+.++++.|+||.+|.+|  +
T Consensus       175 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~  254 (396)
T 3jtx_A          175 CSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRS  254 (396)
T ss_dssp             ESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCC
T ss_pred             ECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcccce
Confidence            99999999999954   599999999999999999985321    1111        12567899999999888777  8


Q ss_pred             eEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 017640          278 GFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSI  357 (368)
Q Consensus       278 G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~  357 (368)
                      |+++.++++++.+.....                     ...++.+.....++..+++.  ...++.++++..++.+++.
T Consensus       255 G~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~  311 (396)
T 3jtx_A          255 GFVAGDAELLKNFLLYRT---------------------YHGSAMSIPVQRASIAAWDD--EQHVIDNRRLYQEKFERVI  311 (396)
T ss_dssp             EEEEECHHHHHHHHHHHH---------------------HHTCCCCHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCHHHHHHHHHHHh---------------------hcccCCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHH
Confidence            999999988877654321                     11236778888877777764  2236777888888888888


Q ss_pred             HHHHhh
Q 017640          358 IVIQER  363 (368)
Q Consensus       358 ~~l~~~  363 (368)
                      +.|.+.
T Consensus       312 ~~l~~~  317 (396)
T 3jtx_A          312 PILQQV  317 (396)
T ss_dssp             HHHTTT
T ss_pred             HHHHhc
Confidence            888765

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.95  E-value=6.7e-27  Score=219.09  Aligned_cols=254  Identities=12%  Similarity=0.088  Sum_probs=194.5

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL  144 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~  144 (368)
                      +++++|+.+... .+++.+.+++.+.+.....++.           ....++|++++++++.+++ +|++|+|+++++..
T Consensus        24 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~y~~-----------~~~~~l~~~la~~~~~~~~-~v~~~~g~~~al~~   91 (364)
T 1lc5_A           24 DQLLDFSANINPLGMPVSVKRALIDNLDCIERYPD-----------ADYFHLHQALARHHQVPAS-WILAGNGETESIFT   91 (364)
T ss_dssp             GGSEECSSCCCTTCCCHHHHHHHHHTGGGGGSCCC-----------TTCHHHHHHHHHHHTSCGG-GEEEESSHHHHHHH
T ss_pred             cceEEeccccCCCCCCHHHHHHHHHHHHHhhcCCC-----------CCHHHHHHHHHHHHCcCHH-HEEECCCHHHHHHH
Confidence            467888887754 4788899998887654322221           1234899999999998754 99999999999999


Q ss_pred             HHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCC-HHHHHHhcccCceEEEEccccccccc
Q 017640          145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPD-LDKLKEMLSRKTKLVVIHHISNMLAS  223 (368)
Q Consensus       145 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d-~~~l~~~l~~~~~~v~~~~~~n~tG~  223 (368)
                      ++.++      +||+|++.+|+|++..    ..++..|++++.++.+++..++ ++++.+.+.+++++|++++++||||.
T Consensus        92 ~~~~~------~gd~vl~~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~v~i~~p~nptG~  161 (364)
T 1lc5_A           92 VASGL------KPRRAMIVTPGFAEYG----RALAQSGCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGL  161 (364)
T ss_dssp             HHHHH------CCSEEEEEESCCTHHH----HHHHHTTCEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEEESSCTTTCC
T ss_pred             HHHHc------CCCeEEEeCCCcHHHH----HHHHHcCCeEEEEeCCcccccchhHHHHHhccCCCCEEEEeCCCCCCCC
Confidence            99875      5799999999998844    4456679999999987522223 46666777778899999999999999


Q ss_pred             ccC---HHHHHHHHHhcCCEEEEecCCcCCcc----cccC-CCCCccEEEecCcCcCCCCc--ceEEE-EcccccccCCC
Q 017640          224 ILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VVDV-QGLDADFLVASSHKMCGPTG--IGFLF-GKSDLLSAMPP  292 (368)
Q Consensus       224 ~~~---l~~i~~l~~~~g~~li~D~a~~~~~~----~~~~-~~~~~d~~~~s~~K~~g~~G--~G~l~-~~~~li~~l~~  292 (368)
                      ++|   +++|.++|++||+++|+|++|+....    .++. +..+.+++++|+||.+|++|  +|+++ .++++++.+.+
T Consensus       162 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~  241 (364)
T 1lc5_A          162 LPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRR  241 (364)
T ss_dssp             CCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCccceEEEEECCHHHHHHHHH
Confidence            999   89999999999999999999984321    1232 34567899999999998777  79999 89888776653


Q ss_pred             cccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          293 FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       293 ~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      ...                       ..+.+.....++..+++..  ..++.++++..++.+++.+.|.+.+|+
T Consensus       242 ~~~-----------------------~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~  290 (364)
T 1lc5_A          242 QQM-----------------------PWSVNALAALAGEVALQDS--AWQQATWHWLREEGARFYQALCQLPLL  290 (364)
T ss_dssp             HSC-----------------------TTCSCHHHHHHHHHGGGCH--HHHHHHHHHHHHHHHHHHHHHHTSTTE
T ss_pred             hCC-----------------------CCCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            321                       1256777777777777652  246778888889999999999877554

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.95  E-value=3.8e-26  Score=220.29  Aligned_cols=266  Identities=15%  Similarity=0.046  Sum_probs=199.3

Q ss_pred             CCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCC----cEEEeCCHHHHHHHHHHHccCC
Q 017640           77 SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSG----EIVFTKNATEAINLVAYSWGLS  152 (368)
Q Consensus        77 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~----~v~~t~g~t~a~~~~~~~~~~~  152 (368)
                      .+.++.+.+++.+.+..   ++.  .+..++...+..+++++++++++|.+.+.    .+++|+|+|+|+.+++.++...
T Consensus        52 ~~~~~~v~e~~~~a~~~---~~~--~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~  126 (452)
T 2dgk_A           52 TWDDENVHKLMDLSINK---NWI--DKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWR  126 (452)
T ss_dssp             CCCCHHHHHHHHHTTTC---BTT--CTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhcc---CCC--ChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHH
Confidence            35567777777666532   221  12234556788889999999999998652    4899999999999998876210


Q ss_pred             CC----CCC-----CEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC-CCCCCHHHHHHhcccCceEEEEcccccccc
Q 017640          153 NL----KSG-----DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHHISNMLA  222 (368)
Q Consensus       153 ~~----~~g-----d~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG  222 (368)
                      ..    ++|     ++|++++ .|.+    +...++..|++++.|++++ ++.+|+++|++++++++++|++++++|+||
T Consensus       127 ~~~~~~~~G~~~~~~~vi~~~-~h~~----~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG  201 (452)
T 2dgk_A          127 WRKRMEAAGKPTDKPNLVCGP-VQIC----WHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTG  201 (452)
T ss_dssp             HHHHHHHTTCCCSCCEEEESS-CCHH----HHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTC
T ss_pred             HHHHHHhcCCCCCCcEEEECC-CcHH----HHHHHHHcCceEEEEecCCCCCeECHHHHHHHHhhCCEEEEEEcCCcCCc
Confidence            00    033     5899998 7766    5556677899999999987 799999999999999999999999999999


Q ss_pred             cccCHHHHHHHHHhc------CCEEEEecCCcCCcc-------cccCCCCCccEEEecCcCc-CCCCcceEEEEccc-cc
Q 017640          223 SILPIEEIVHWSHDV------GAKVLVDACQSVPHM-------VVDVQGLDADFLVASSHKM-CGPTGIGFLFGKSD-LL  287 (368)
Q Consensus       223 ~~~~l~~i~~l~~~~------g~~li~D~a~~~~~~-------~~~~~~~~~d~~~~s~~K~-~g~~G~G~l~~~~~-li  287 (368)
                      .+.|+++|.++|+++      |+++++|++|+.+..       ++++...+.|++++|+||+ ++|.|+|+++++++ ++
T Consensus       202 ~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~  281 (452)
T 2dgk_A          202 NYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEAL  281 (452)
T ss_dssp             BBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGS
T ss_pred             ccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCCCCCeEEEEEcCHHHH
Confidence            999999999999995      999999999986543       2333334789999999995 46888999999764 33


Q ss_pred             -ccCC--CcccCCcceeecccCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          288 -SAMP--PFLGGGEMISDVFLDHSTFADPPSRF-EAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       288 -~~l~--~~~~g~~~~~~~~~~~~~~~~~~~~~-~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                       +.+.  +.+.++..               ..+ ..++.+....+++..+++.+...|++.+.++..++++++.+.|.++
T Consensus       282 ~~~~~~~~~~~~~~~---------------~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~  346 (452)
T 2dgk_A          282 PQELVFNVDYLGGQI---------------GTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKL  346 (452)
T ss_dssp             CGGGCEEECCTTCCE---------------EECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHhccCccccCCCC---------------CCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence             3332  11111110               011 1345566566777788888777788999999999999999999988


Q ss_pred             cCCC
Q 017640          364 HNTT  367 (368)
Q Consensus       364 ~g~t  367 (368)
                      ++++
T Consensus       347 ~~~~  350 (452)
T 2dgk_A          347 GPYE  350 (452)
T ss_dssp             SSEE
T ss_pred             CCeE
Confidence            7653

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.95  E-value=6.9e-26  Score=221.42  Aligned_cols=283  Identities=14%  Similarity=0.092  Sum_probs=199.3

Q ss_pred             EEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCC-CCcEEEeCCHHHHHHHHHH
Q 017640           69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD-SGEIVFTKNATEAINLVAY  147 (368)
Q Consensus        69 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~-~~~v~~t~g~t~a~~~~~~  147 (368)
                      .|+++...+..+..+...   .+... .+++...+..+....+..+++++++++++|.+. .+++++|+|+|+|+.+++.
T Consensus        94 ~~~~~~~~~~~~~~~~~~---~l~~~-~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~  169 (504)
T 2okj_A           94 RFFNQLSTGLDIIGLAGE---WLTST-ANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIM  169 (504)
T ss_dssp             TEESSSSCCCCHHHHHHH---HHHHH-HCCBSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHH
T ss_pred             CEEEEccCCCCHHHHHHH---HHHHh-hccCCCchhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHH
Confidence            488887666666655442   22221 133323344455567777889999999999983 3489999999999999998


Q ss_pred             HccCCCC----CCC-----C-EEEEcCCCCcccHHHHHHHHHHcCC---EEEEEeCCCCCCCCHHHHHHhccc------C
Q 017640          148 SWGLSNL----KSG-----D-EVILTVAEHHSAIVPWQLVAQKTGA---NLKFLNLNDDESPDLDKLKEMLSR------K  208 (368)
Q Consensus       148 ~~~~~~~----~~g-----d-~vl~~~~~~~s~~~~~~~~~~~~g~---~v~~v~~~~~~~~d~~~l~~~l~~------~  208 (368)
                      ++.....    ++|     + .|+++.+.|+++...+    +..|.   +++.||.++++.+|+++|++++++      +
T Consensus       170 ~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~----~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~  245 (504)
T 2okj_A          170 AARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAG----AALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYV  245 (504)
T ss_dssp             HHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHH----HHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCE
T ss_pred             HHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHH----HHcCCCcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCC
Confidence            8721000    145     6 7999999999865443    34455   899999988899999999999976      5


Q ss_pred             ceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCccc-----ccCCC-CCccEEEecCcCcCC-CCcceEEE
Q 017640          209 TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMV-----VDVQG-LDADFLVASSHKMCG-PTGIGFLF  281 (368)
Q Consensus       209 ~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~-----~~~~~-~~~d~~~~s~~K~~g-~~G~G~l~  281 (368)
                      +++|++++++|+||.+.|+++|.++|++||+++++|++|+.+...     ..+.. .++|++++|+||+++ |.|+|+++
T Consensus       246 ~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~  325 (504)
T 2okj_A          246 PFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAIL  325 (504)
T ss_dssp             EEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEE
T ss_pred             ceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEE
Confidence            899999999999999999999999999999999999999976643     22332 268999999999776 77899999


Q ss_pred             Eccc-ccc----cCCCcccCCcceeecccCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 017640          282 GKSD-LLS----AMPPFLGGGEMISDVFLDHSTFA-DPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIIC  355 (368)
Q Consensus       282 ~~~~-li~----~l~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~  355 (368)
                      ++++ +++    ...++..+++.......+...+. ...+|+     ...   ++..+++.+...|++.+.++..+++++
T Consensus       326 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~-----~~l---~~~a~l~~lg~~g~~~~~~~~~~~a~~  397 (504)
T 2okj_A          326 VKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHV-----DIF---KFWLMWKAKGTVGFENQINKCLELAEY  397 (504)
T ss_dssp             ESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBC-----CHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCCCCCc-----cHH---HHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            9874 544    23455543332111001111110 111122     222   333445555566889999999999999


Q ss_pred             HHHHHHhhcCCC
Q 017640          356 SIIVIQERHNTT  367 (368)
Q Consensus       356 l~~~l~~~~g~t  367 (368)
                      +.+.|.+++|++
T Consensus       398 l~~~L~~~~~~~  409 (504)
T 2okj_A          398 LYAKIKNREEFE  409 (504)
T ss_dssp             HHHHHTTCTTEE
T ss_pred             HHHHHhcCCCEE
Confidence            999999887754

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.95  E-value=6.9e-27  Score=218.53  Aligned_cols=217  Identities=13%  Similarity=0.150  Sum_probs=171.1

Q ss_pred             HHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCC-CEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC
Q 017640          114 ELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSG-DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND  192 (368)
Q Consensus       114 ~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~g-d~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~  192 (368)
                      .++|++++++++.+++ +|++|+|+++++..++.++    +++| |+|++.+|+|++..    ..++..|++++.++.++
T Consensus        61 ~~lr~~la~~~~~~~~-~v~~~~G~~~ai~~~~~~~----~~~g~d~Vl~~~p~~~~~~----~~~~~~g~~~~~v~~~~  131 (356)
T 1fg7_A           61 KAVIENYAQYAGVKPE-QVLVSRGADEGIELLIRAF----CEPGKDAILYCPPTYGMYS----VSAETIGVECRTVPTLD  131 (356)
T ss_dssp             HHHHHHHHHHHTSCGG-GEEEESHHHHHHHHHHHHH----CCTTTCEEEECSSSCTHHH----HHHHHHTCEEEECCCCT
T ss_pred             HHHHHHHHHHhCCChH-HEEEcCCHHHHHHHHHHHH----hCCCCCEEEEeCCChHHHH----HHHHHcCCEEEEeeCCC
Confidence            4899999999998764 9999999999999999998    7899 99999999998854    34455699999999887


Q ss_pred             CCCCCHHHHHHhcccCceEEEEcccccccccccCHH---HHHHHHHhcCCEEEEecCCcCCcc--c-ccC-CCCCccEEE
Q 017640          193 DESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIE---EIVHWSHDVGAKVLVDACQSVPHM--V-VDV-QGLDADFLV  265 (368)
Q Consensus       193 ~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~---~i~~l~~~~g~~li~D~a~~~~~~--~-~~~-~~~~~d~~~  265 (368)
                      ++.+|+++++++++ ++++|++++++||||.++|.+   +|+++|+ +|+++|+|++|+....  + .++ ...+.++++
T Consensus       132 ~~~~d~~~l~~~i~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~  209 (356)
T 1fg7_A          132 NWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAIL  209 (356)
T ss_dssp             TSCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEE
T ss_pred             CCCCCHHHHHHHhc-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEE
Confidence            77899999999998 899999999999999999955   4555566 9999999999984331  1 222 334678999


Q ss_pred             ecCcCcCCCCc--ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHH
Q 017640          266 ASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQ  343 (368)
Q Consensus       266 ~s~~K~~g~~G--~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~  343 (368)
                      .|+||.+|++|  +|++++++++++.+.+...                    .+   +.+.....++..+++......++
T Consensus       210 ~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~--------------------~~---~~~~~~~~a~~~~l~~~~~~~~~  266 (356)
T 1fg7_A          210 RTLSKAFALAGLRCGFTLANEEVINLLMKVIA--------------------PY---PLSTPVADIAAQALSPQGIVAMR  266 (356)
T ss_dssp             EESSSTTCCGGGCCEEEEECHHHHHHHHHHSC--------------------SS---CSCHHHHHHHHHHTSHHHHHHHH
T ss_pred             ecchHhhcCchhhhEEEEeCHHHHHHHHHhcC--------------------CC---CCCHHHHHHHHHHhcCccHHHHH
Confidence            99999999888  8999999988876653321                    11   45666666666665532211267


Q ss_pred             HHHHHHHHHHHHHHHHHHhhc
Q 017640          344 KIHAYEVKWIICSIIVIQERH  364 (368)
Q Consensus       344 ~i~~~~~~l~~~l~~~l~~~~  364 (368)
                      .++++.+++.+++.+.|.+++
T Consensus       267 ~~~~~~~~~~~~l~~~L~~~~  287 (356)
T 1fg7_A          267 ERVAQIIAEREYLIAALKEIP  287 (356)
T ss_dssp             HHHHHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHHHHHhCC
Confidence            778888899999999998764

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.95  E-value=3.1e-26  Score=217.24  Aligned_cols=260  Identities=15%  Similarity=0.118  Sum_probs=196.0

Q ss_pred             CCeEEeccCCCCC--CcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHH
Q 017640           66 KKLVYLDNAATSQ--KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN  143 (368)
Q Consensus        66 ~~~i~l~~~~~~~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~  143 (368)
                      ..++.|..+.+-.  .++.+.+++.+.+..+. ..+ +.+...++..+...++++.+++++|.+  +.+ +++++++++.
T Consensus        45 ~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~-~~~-~~~~~~~g~~~~~~~l~~~la~~~g~~--~~i-~~~sGs~a~~  119 (401)
T 1fc4_A           45 SHVINFCANNYLGLANHPDLIAAAKAGMDSHG-FGM-ASVRFICGTQDSHKELEQKLAAFLGME--DAI-LYSSCFDANG  119 (401)
T ss_dssp             CEEEECCCSCTTSCTTCHHHHHHHHHHHHHHC-SCC-CSCHHHHCCBHHHHHHHHHHHHHHTCS--EEE-EESCHHHHHH
T ss_pred             ccEEEeeccCcccccCCHHHHHHHHHHHHHhC-CCC-CCCCcccCCcHHHHHHHHHHHHHhCCC--cEE-EeCChHHHHH
Confidence            4455555553222  58999999999887642 211 111111112456778999999999986  244 5555678999


Q ss_pred             HHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc------CceEEEEccc
Q 017640          144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR------KTKLVVIHHI  217 (368)
Q Consensus       144 ~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~  217 (368)
                      .++.++    +++||.|++.++.|.+...    .++..|++++.++..     |+++|++++++      ++++|+++++
T Consensus       120 ~~~~~~----~~~gd~v~~~~~~~~~~~~----~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~~~~~~v~~~~~  186 (401)
T 1fc4_A          120 GLFETL----LGAEDAIISDALNHASIID----GVRLCKAKRYRYANN-----DMQELEARLKEAREAGARHVLIATDGV  186 (401)
T ss_dssp             TTHHHH----CCTTCEEEEETTCCHHHHH----HHHTSCSEEEEECTT-----CHHHHHHHHHHHHHTTCSSEEEEEESE
T ss_pred             HHHHHH----cCCCCEEEEcchhHHHHHH----HHHHcCCceEEECCC-----CHHHHHHHHHHhhccCCCceEEEEeCC
Confidence            999988    8899999999999987543    355679999998843     88999998875      7899999999


Q ss_pred             ccccccccCHHHHHHHHHhcCCEEEEecCCcCCcc-c--------ccCCCCCccEEEecCcCcC-CCCcceEEEEccccc
Q 017640          218 SNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM-V--------VDVQGLDADFLVASSHKMC-GPTGIGFLFGKSDLL  287 (368)
Q Consensus       218 ~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~-~--------~~~~~~~~d~~~~s~~K~~-g~~G~G~l~~~~~li  287 (368)
                      +||||.++|+++|.++|++||+++|+|++|+.+.. +        +++.. +.|++++|+||.+ |+.| |+++++++++
T Consensus       187 ~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~-~~di~~~s~sK~~~~~~g-G~~~~~~~~~  264 (401)
T 1fc4_A          187 FSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMG-RVDIITGTLGKALGGASG-GYTAARKEVV  264 (401)
T ss_dssp             ETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTT-CCSEEEEESSSTTCSSSC-EEEEECHHHH
T ss_pred             cCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCc-CCcEEEecchhhccCCCC-EEEEcCHHHH
Confidence            99999999999999999999999999999975543 1        23332 5799999999988 7776 9999999888


Q ss_pred             ccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          288 SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       288 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      +.+.+....+                  .+ .++.+...++++..+++.+..  .+.+.++..++.+++.+.|.+. |++
T Consensus       265 ~~l~~~~~~~------------------~~-~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~  322 (401)
T 1fc4_A          265 EWLRQRSRPY------------------LF-SNSLAPAIVAASIKVLEMVEA--GSELRDRLWANARQFREQMSAA-GFT  322 (401)
T ss_dssp             HHHHHHCHHH------------------HH-SCCCCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             HHHHHhCcCc------------------ee-CCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc-CCc
Confidence            7665322100                  01 337788888888888888765  4778899999999999999886 543

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.95  E-value=2.7e-27  Score=224.37  Aligned_cols=260  Identities=15%  Similarity=0.223  Sum_probs=191.3

Q ss_pred             CCeEEeccCCCC---CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHH
Q 017640           66 KKLVYLDNAATS---QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI  142 (368)
Q Consensus        66 ~~~i~l~~~~~~---~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~  142 (368)
                      +++++|+.+...   .+++.+.+++.+.+........  .+.    ......++|+.+++++|.+++ +|++|+|+++++
T Consensus        32 ~~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~--~y~----~~~~~~~l~~~la~~~g~~~~-~v~~~~g~~~al  104 (397)
T 2zyj_A           32 PGILSFAGGLPAPELFPKEEAAEAAARILREKGEVAL--QYS----PTEGYAPLRAFVAEWIGVRPE-EVLITTGSQQAL  104 (397)
T ss_dssp             TTCEEESSCCCCGGGCCHHHHHHHHHHHHHHHHHHHT--SCC----CTTCCHHHHHHHHHHHTSCGG-GEEEESHHHHHH
T ss_pred             CCceecCCCCCCchhCCHHHHHHHHHHHHHhcchhhh--CCC----CCCCCHHHHHHHHHHhCCChh-hEEEeccHHHHH
Confidence            567899877544   3678899999888765210000  000    012234799999999997654 999999999999


Q ss_pred             HHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc-CceEE-EEcccccc
Q 017640          143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLV-VIHHISNM  220 (368)
Q Consensus       143 ~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~-~~~~v-~~~~~~n~  220 (368)
                      ..++.++    +++||+|++.+|+|++..    ..++..|++++.++.++++ +|+++|++++++ ++++| ++++++||
T Consensus       105 ~~~~~~~----~~~gd~Vl~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~-~d~~~l~~~l~~~~~~~v~~~~~~~np  175 (397)
T 2zyj_A          105 DLVGKVF----LDEGSPVLLEAPSYMGAI----QAFRLQGPRFLTVPAGEEG-PDLDALEEVLKRERPRFLYLIPSFQNP  175 (397)
T ss_dssp             HHHHHHH----CCTTCEEEEEESCCHHHH----HHHHTTCCEEEEEEEETTE-ECHHHHHHHHHHCCCSCEEECCBSCTT
T ss_pred             HHHHHHh----CCCCCEEEEeCCCcHHHH----HHHHHcCCEEEecCcCCCC-CCHHHHHHHHhhcCCeEEEECCCCcCC
Confidence            9999998    789999999999988844    4455679999999987665 899999999986 78887 58999999


Q ss_pred             cccccCH---HHHHHHHHhcCCEEEEecCCcCCcc----cccCCCC------CccEEEecCcCcCCCCc--ceEEEEccc
Q 017640          221 LASILPI---EEIVHWSHDVGAKVLVDACQSVPHM----VVDVQGL------DADFLVASSHKMCGPTG--IGFLFGKSD  285 (368)
Q Consensus       221 tG~~~~l---~~i~~l~~~~g~~li~D~a~~~~~~----~~~~~~~------~~d~~~~s~~K~~g~~G--~G~l~~~~~  285 (368)
                      ||.++|.   ++|.++|++||+++|+|++|+....    +.++..+      +.+++++|+||.+| +|  +|+++++++
T Consensus       176 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~~  254 (397)
T 2zyj_A          176 TGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLS-PGLRVAFAVAHPE  254 (397)
T ss_dssp             TCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTC-GGGCCEEEECCHH
T ss_pred             CCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccc-ccceeEEEecCHH
Confidence            9999994   5899999999999999999986332    1222222      34588999999999 66  799999998


Q ss_pred             ccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          286 LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       286 li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +++.+.+...++                    .. +.+.....++..+++......++.++++..++.+++.+.|.+.
T Consensus       255 ~~~~l~~~~~~~--------------------~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  311 (397)
T 2zyj_A          255 ALQKLVQAKQGA--------------------DL-HTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDRE  311 (397)
T ss_dssp             HHHHHHHHHHHH--------------------HS-SCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh--------------------cC-CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887765433211                    11 2355566666566553211236677888888888999888764

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.95  E-value=8.7e-27  Score=223.89  Aligned_cols=252  Identities=16%  Similarity=0.130  Sum_probs=190.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCE
Q 017640          105 LSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGAN  184 (368)
Q Consensus       105 ~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~  184 (368)
                      .+.+..+...++++.+++++|.+.. ++++++|+|.+++.+..++   .+++||+|++++++|+++...+...++..|++
T Consensus       102 ~~~g~~~~~~~~~~~la~~~g~~~~-~i~~~~g~taa~ea~~~a~---~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~  177 (438)
T 1wyu_A          102 VSQGVLQATFEYQTMIAELAGLEIA-NASMYDGATALAEGVLLAL---RETGRMGVLVSQGVHPEYRAVLRAYLEAVGAK  177 (438)
T ss_dssp             GCHHHHHHHHHHHHHHHHHHTSSEE-CSCBSSHHHHHHHHHHHHH---HHHTCCEEEEETTSCHHHHHHHHHHHHHTTCE
T ss_pred             hhhhHHHHHHHHHHHHHHHhCCCcc-ceEEeCcHHHHHHHHHHHH---hcCCCCEEEEcCccCHhHHHHHHHHHHHCCCE
Confidence            3556788899999999999999754 7899999995555554444   25789999999999999988888888889999


Q ss_pred             EEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecC-CcCCcccccCCCCCccE
Q 017640          185 LKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDAC-QSVPHMVVDVQGLDADF  263 (368)
Q Consensus       185 v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a-~~~~~~~~~~~~~~~d~  263 (368)
                      ++.++. +++.+|+++    +++++++|+++++ |+||.+.|+++|.++|++||+++++|.. ++.|....+ ..++.|+
T Consensus       178 v~~v~~-~~~~~d~~~----i~~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~~~-~~~g~D~  250 (438)
T 1wyu_A          178 LLTLPL-EGGRTPLPE----VGEEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPP-GAYGADI  250 (438)
T ss_dssp             EEEECC-BTTBCCCCC----CCTTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCH-HHHTCSE
T ss_pred             EEEEcC-cCCccCHHH----hCCCeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccCcCCC-ccCCCCE
Confidence            999997 567778766    6778999999999 9999999999999999999999997755 555554333 3457999


Q ss_pred             EEecCcC-----cCCCCcceEEEEcccccccCCCcccCCcceeecccCC-CCC--CCCCCCCCCCCCCH---HHHHHHHH
Q 017640          264 LVASSHK-----MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDH-STF--ADPPSRFEAGTPAI---GEAIGLGA  332 (368)
Q Consensus       264 ~~~s~~K-----~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~-~~~--~~~~~~~~~gt~~~---~~~~a~~~  332 (368)
                      +++|.+|     +++++|+|++++++++++.+.+...|++........+ ..+  .....|++.+|+++   ..++++.+
T Consensus       251 ~~~s~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~a  330 (438)
T 1wyu_A          251 AVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMG  330 (438)
T ss_dssp             EEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHH
T ss_pred             EEECCcccCCCccCCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHH
Confidence            9999665     2333389999999999888876654432110000000 000  01122556678877   55666655


Q ss_pred             H--HHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          333 A--IDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       333 a--l~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      +  +..+...|++.+.++..++++++.+.|.+++|++
T Consensus       331 a~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~  367 (438)
T 1wyu_A          331 AMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVR  367 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCE
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence            5  7777777899999999999999999999987764

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=99.95  E-value=4e-26  Score=216.84  Aligned_cols=263  Identities=16%  Similarity=0.165  Sum_probs=192.3

Q ss_pred             CCeEEeccCCCC---CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----CCC-CCCcEEEeCC
Q 017640           66 KKLVYLDNAATS---QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS-DSGEIVFTKN  137 (368)
Q Consensus        66 ~~~i~l~~~~~~---~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~-~~~~v~~t~g  137 (368)
                      .++++|+.+...   .+++.+.+++.+.+.......  . +..    .....++|+.+++++    |.+ ++++|++|+|
T Consensus        34 ~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~--~-y~~----~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g  106 (407)
T 2zc0_A           34 VKLISLAAGDPDPELIPRAVLGEIAKEVLEKEPKSV--M-YTP----ANGIPELREELAAFLKKYDHLEVSPENIVITIG  106 (407)
T ss_dssp             CCCEECCSCCCCTTTSCHHHHHHHHHHHHHHCGGGG--S-CCC----TTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESH
T ss_pred             CceEeCCCCCCCchhCCHHHHHHHHHHHHhhccccc--c-CCC----CCCCHHHHHHHHHHHHHhcCCCCCcceEEEecC
Confidence            367888776543   367889999988887531100  0 110    112336777777777    843 2249999999


Q ss_pred             HHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcc----c--CceE
Q 017640          138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS----R--KTKL  211 (368)
Q Consensus       138 ~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~----~--~~~~  211 (368)
                      +++|+..++.++    +++||+|++.+|+|++..    ..++..|++++.++.++++ +|+++|+++++    +  ++++
T Consensus       107 ~t~a~~~~~~~~----~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~  177 (407)
T 2zc0_A          107 GTGALDLLGRVL----IDPGDVVITENPSYINTL----LAFEQLGAKIEGVPVDNDG-MRVDLLEEKIKELKAKGQKVKL  177 (407)
T ss_dssp             HHHHHHHHHHHH----CCTTCEEEEEESCCHHHH----HHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHHHHh----cCCCCEEEEeCCChHHHH----HHHHHcCCEEEEcccCCCC-CCHHHHHHHHHhhhcccCCceE
Confidence            999999999998    789999999999988843    4456679999999987665 89999999997    5  7888


Q ss_pred             E-EEcccccccccccCHH---HHHHHHHhcCCEEEEecCCcCCcc----cccC---CCCCccEEEecCcCcCCCCc--ce
Q 017640          212 V-VIHHISNMLASILPIE---EIVHWSHDVGAKVLVDACQSVPHM----VVDV---QGLDADFLVASSHKMCGPTG--IG  278 (368)
Q Consensus       212 v-~~~~~~n~tG~~~~l~---~i~~l~~~~g~~li~D~a~~~~~~----~~~~---~~~~~d~~~~s~~K~~g~~G--~G  278 (368)
                      | ++++++||||.++|.+   +|.++|++||+++|+|++|+.+..    ..++   +..+.+++++|+||.+| +|  +|
T Consensus       178 v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G  256 (407)
T 2zc0_A          178 IYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLG-TGFRIG  256 (407)
T ss_dssp             EEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTC-TTSCCE
T ss_pred             EEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccC-CCcceE
Confidence            7 5899999999999965   999999999999999999986432    1112   22246689999999999 56  89


Q ss_pred             EEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-HH-hCHHHHHHHHHHHHHHH
Q 017640          279 FLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL-ST-IGMQKIHAYEVKWIICS  356 (368)
Q Consensus       279 ~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~-~~-~g~~~i~~~~~~l~~~l  356 (368)
                      ++++++++++.+.+....++                     .+.+.....++..+++.. .+ ..++.++++..++.+++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l  315 (407)
T 2zc0_A          257 WIIAEGEILKKVLMQKQPID---------------------FCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIM  315 (407)
T ss_dssp             EEECCHHHHHHHHHHHTTTT---------------------SSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHH
T ss_pred             EEecCHHHHHHHHHHHHhhc---------------------CCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH
Confidence            99999888876654332111                     133555666666666643 12 35678888889999999


Q ss_pred             HHHHHhh-cCC
Q 017640          357 IIVIQER-HNT  366 (368)
Q Consensus       357 ~~~l~~~-~g~  366 (368)
                      .+.|.+. +++
T Consensus       316 ~~~L~~~~~~~  326 (407)
T 2zc0_A          316 LKALENHLPNA  326 (407)
T ss_dssp             HHHHHHHCTTS
T ss_pred             HHHHHHhCCCC
Confidence            9999874 444

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.95  E-value=1.2e-26  Score=220.97  Aligned_cols=260  Identities=15%  Similarity=0.148  Sum_probs=194.1

Q ss_pred             CCCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcC----CC-CCCcEEEeCCH
Q 017640           65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN----AS-DSGEIVFTKNA  138 (368)
Q Consensus        65 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~----~~-~~~~v~~t~g~  138 (368)
                      ++++++|+.+.++ +.++.+.+++ +.+.... .    .+..    .....++|+.++++++    .+ .+++|++|+|+
T Consensus        42 g~~~i~l~~~~~~~~~~~~v~~a~-~~l~~~~-~----~y~~----~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~  111 (409)
T 2gb3_A           42 GVRIHHLNIGQPDLKTPEVFFERI-YENKPEV-V----YYSH----SAGIWELREAFASYYKRRQRVDVKPENVLVTNGG  111 (409)
T ss_dssp             TCEEEECSSCCCCSCCCTHHHHHH-HHTCCSS-C----CCCC----TTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHH
T ss_pred             CCCEEeccCCCCCCCCCHHHHHHH-HHHhcCC-C----CCCC----CCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCH
Confidence            3678999998887 5678888888 7664310 0    1111    1112356777777764    22 22489999999


Q ss_pred             HHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC--CCCCCHHHHHHhcccCceEEEEcc
Q 017640          139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVVIHH  216 (368)
Q Consensus       139 t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~~~~~v~~~~  216 (368)
                      ++|+..++.++    +++||+|++.+++|++...    .++..|.+++.++.++  ++.+ +++|++++++++++|++++
T Consensus       112 t~a~~~~~~~~----~~~gd~Vl~~~~~~~~~~~----~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~~~~~~v~~~~  182 (409)
T 2gb3_A          112 SEAILFSFAVI----ANPGDEILVLEPFYANYNA----FAKIAGVKLIPVTRRMEEGFAI-PQNLESFINERTKGIVLSN  182 (409)
T ss_dssp             HHHHHHHHHHH----CCTTCEEEEEESCCTHHHH----HHHHHTCEEEEEECCGGGTSCC-CTTGGGGCCTTEEEEEEES
T ss_pred             HHHHHHHHHHh----CCCCCEEEEcCCCchhHHH----HHHHcCCEEEEeccCCCCCCcc-HHHHHHhhCcCCeEEEECC
Confidence            99999999998    7899999999999998544    3455699999999875  3444 8899999988999999999


Q ss_pred             cccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc---ccc-CCC-CCccEEEecCcCcCCCCc--ceEEEEcc-c
Q 017640          217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVD-VQG-LDADFLVASSHKMCGPTG--IGFLFGKS-D  285 (368)
Q Consensus       217 ~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~---~~~-~~~-~~~d~~~~s~~K~~g~~G--~G~l~~~~-~  285 (368)
                      ++||||.++|   +++|.++|++||+++|+|++|+.+..   ... +.. .+.|++++|+||.+|++|  +|++++++ +
T Consensus       183 p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~  262 (409)
T 2gb3_A          183 PCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEE  262 (409)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHH
T ss_pred             CCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCccccCCCCEEEEecchhccCCccceEEEEEECcHH
Confidence            9999999987   78999999999999999999986432   112 222 357999999999999888  99999999 8


Q ss_pred             ccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcC
Q 017640          286 LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHN  365 (368)
Q Consensus       286 li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g  365 (368)
                      +++.+.+....                     .. +++.....++..+++.. ...++.++++..++.+++.+.|.+. |
T Consensus       263 l~~~l~~~~~~---------------------~~-~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g  318 (409)
T 2gb3_A          263 LISHAMKLAQG---------------------RL-APPLLEQIGSVGLLNLD-DSFFDFVRETYRERVETVLKKLEEH-G  318 (409)
T ss_dssp             HHHHHHHHHHH---------------------SC-CCCHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHhc---------------------cC-CCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHc-C
Confidence            87766543211                     11 45666666666666432 2246778888999999999999876 5


Q ss_pred             CC
Q 017640          366 TT  367 (368)
Q Consensus       366 ~t  367 (368)
                      ++
T Consensus       319 ~~  320 (409)
T 2gb3_A          319 LK  320 (409)
T ss_dssp             CC
T ss_pred             ce
Confidence            44

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.95  E-value=1.4e-26  Score=217.37  Aligned_cols=256  Identities=14%  Similarity=0.082  Sum_probs=184.9

Q ss_pred             CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCC
Q 017640           76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLK  155 (368)
Q Consensus        76 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~  155 (368)
                      .+++++.+.+++.+.+.....++           .+...++++.+++++|.+   ++++|+|+++|+..++.++.. .++
T Consensus         8 ~~~~~~~v~~a~~~~~~~~~~~~-----------~~~~~~l~~~la~~~~~~---~v~~~~ggt~al~~~~~~~~~-~~~   72 (375)
T 2fnu_A            8 EPCLDKEDKKAVLEVLNSKQLTQ-----------GKRSLLFEEALCEFLGVK---HALVFNSATSALLTLYRNFSE-FSA   72 (375)
T ss_dssp             CCCCCHHHHHHHHHHHTSSCCSS-----------SHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHSSC-CCT
T ss_pred             CCCCCHHHHHHHHHHHHcCcccC-----------ChHHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHhcc-cCC
Confidence            35789999999988875421111           234668999999999986   899999999999999998821 168


Q ss_pred             CCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHH
Q 017640          156 SGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSH  235 (368)
Q Consensus       156 ~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~  235 (368)
                      +||+|++++++|++....+    +..|++++.+++++++.+|+++|++++++++++|+++++   ||.+.|+++|.++|+
T Consensus        73 ~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~l~~i~~l~~  145 (375)
T 2fnu_A           73 DRNEIITTPISFVATANML----LESGYTPVFAGIKNDGNIDELALEKLINERTKAIVSVDY---AGKSVEVESVQKLCK  145 (375)
T ss_dssp             TSCEEEECSSSCTHHHHHH----HHTTCEEEECCBCTTSSBCGGGSGGGCCTTEEEEEEECG---GGCCCCHHHHHHHHH
T ss_pred             CCCEEEECCCccHhHHHHH----HHCCCEEEEeccCCCCCCCHHHHHhhcCcCceEEEEeCC---cCCccCHHHHHHHHH
Confidence            9999999999999966543    456999999999887889999999999988999888877   999999999999999


Q ss_pred             hcCCEEEEecCCcCCccccc--CCCCCccEEEecCc--CcCCCCcceEEEEc--ccccccCCCcccCCcceeecccCCCC
Q 017640          236 DVGAKVLVDACQSVPHMVVD--VQGLDADFLVASSH--KMCGPTGIGFLFGK--SDLLSAMPPFLGGGEMISDVFLDHST  309 (368)
Q Consensus       236 ~~g~~li~D~a~~~~~~~~~--~~~~~~d~~~~s~~--K~~g~~G~G~l~~~--~~li~~l~~~~~g~~~~~~~~~~~~~  309 (368)
                      +||+++|+|++|+.+..+..  +... .|+++.|++  |++|+ |+|+++++  +++++.+++...++.....       
T Consensus       146 ~~~~~li~D~a~~~~~~~~~~~~~~~-~~i~~~s~s~~K~~~~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~-------  216 (375)
T 2fnu_A          146 KHSLSFLSDSSHALGSEYQNKKVGGF-ALASVFSFHAIKPITT-AEGGAVVTNDSELHEKMKLFRSHGMLKKD-------  216 (375)
T ss_dssp             HHTCEEEEECTTCTTCEETTEETTSS-SSEEEEECCTTSSSCC-SSCEEEEESCHHHHHHHHHHTBTTEEESS-------
T ss_pred             HcCCEEEEECccccCCeECCeecccc-CCeEEEeCCCCCCccc-cCceEEEeCCHHHHHHHHHHHhcCCcccc-------
Confidence            99999999999998765422  2222 256666666  99988 88888884  5576666554433321000       


Q ss_pred             CCCCCCCCCCCCCCHH-HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          310 FADPPSRFEAGTPAIG-EAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       310 ~~~~~~~~~~gt~~~~-~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                          ..+|+.++.+.. .+..+..++.+....+++.+.++..++++++.+.|.+++|+
T Consensus       217 ----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  270 (375)
T 2fnu_A          217 ----FFEGEVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALTYDRIFKDNPYF  270 (375)
T ss_dssp             ----SSCEEESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCSSE
T ss_pred             ----ccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence                011111111100 01111122222233467888899999999999999887664

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.95  E-value=2.4e-27  Score=230.35  Aligned_cols=286  Identities=14%  Similarity=0.050  Sum_probs=204.9

Q ss_pred             CeEEeccCCCCCCcHHHHHHHHHHHHHhh--ccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCC---cEEEeCCHHHH
Q 017640           67 KLVYLDNAATSQKPIAVLKALQNYYEAYN--SNVHRGIHFLSAKATDEYELARKKVAAFINASDSG---EIVFTKNATEA  141 (368)
Q Consensus        67 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~---~v~~t~g~t~a  141 (368)
                      +.+.|..+. .++++.|++++.+.+...+  ++|....+..+....+..+.+++++++++|++.++   +|++++|+ ++
T Consensus        45 ~~i~L~a~e-~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs-~a  122 (483)
T 1rv3_A           45 VGLELIASE-NFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS-PA  122 (483)
T ss_dssp             SSEECCTTC-CCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH-HH
T ss_pred             cCeEEEcCC-CCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcH-HH
Confidence            457886554 4789999999988876543  44433222333345667778999999999998542   37777776 88


Q ss_pred             HHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHH----HHHHHcC--CEEEEEeCC-CCCCCCHHHHHHhcc-cCceEEE
Q 017640          142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQ----LVAQKTG--ANLKFLNLN-DDESPDLDKLKEMLS-RKTKLVV  213 (368)
Q Consensus       142 ~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~----~~~~~~g--~~v~~v~~~-~~~~~d~~~l~~~l~-~~~~~v~  213 (368)
                      +..++.++    +++||+|++.+++|.++...+.    ..++..|  .+++.++++ +++.+|+++|+++++ .++++|+
T Consensus       123 n~~~~~al----l~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~~~tklIi  198 (483)
T 1rv3_A          123 NFAVYTAL----VEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLII  198 (483)
T ss_dssp             HHHHHHHH----TCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEE
T ss_pred             HHHHHHHh----cCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHHHHhhcCCcEEE
Confidence            88888888    8999999999999988753221    0111223  455556556 568899999999998 7899999


Q ss_pred             EcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCC---CccEEEecCcCcC-CCCcceEEEEccccccc
Q 017640          214 IHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGL---DADFLVASSHKMC-GPTGIGFLFGKSDLLSA  289 (368)
Q Consensus       214 ~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~---~~d~~~~s~~K~~-g~~G~G~l~~~~~li~~  289 (368)
                      + +++|++ .++|+++|.++|++||+++++|++|+.|....+....   +.|++++|+||++ ||.| |+++++++++. 
T Consensus       199 ~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~~~div~~s~~K~l~Gprg-G~i~~~~~~~~-  274 (483)
T 1rv3_A          199 A-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRA-GMIFYRRGVRS-  274 (483)
T ss_dssp             E-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGGGCCCSC-EEEEEECSBCC-
T ss_pred             E-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCCCCcEEEecCcccCCCCCc-eEEEEcchhhh-
Confidence            9 889998 8999999999999999999999999876654443333   6899999999954 7777 99999988653 


Q ss_pred             CCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          290 MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       290 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      ++  ..+|....+.....  +.........|+++...++++..+++...+.+++.+.++..++++++.+.|.++ |++
T Consensus       275 ~~--~~~g~~~~y~~~~~--~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  347 (483)
T 1rv3_A          275 VD--PKTGKEILYNLESL--INSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL-GYK  347 (483)
T ss_dssp             ---------CCBCCHHHH--HHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCE
T ss_pred             hc--cccCcchhhHHHHH--hhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhc-CCE
Confidence            33  11111100000000  000000112689999999999999998876678899999999999999999886 643

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=99.95  E-value=1e-26  Score=218.62  Aligned_cols=257  Identities=15%  Similarity=0.068  Sum_probs=188.9

Q ss_pred             CeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC-CCCcEEEeCCHHHHHHH
Q 017640           67 KLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-DSGEIVFTKNATEAINL  144 (368)
Q Consensus        67 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~~v~~t~g~t~a~~~  144 (368)
                      +++.|+.+... +.|+.+.+++.+.+.....++..      .+..+..+.+.+.+.+.+|.+ .+++|++|+|+++++..
T Consensus        24 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~------~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~   97 (376)
T 3ezs_A           24 RGLDLGIGEPQFETPKFIQDALKNHTHSLNIYPKS------AFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFN   97 (376)
T ss_dssp             CCCBCSSCCCCSCCCHHHHHHHHTTGGGGGSCCCT------TCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHH
T ss_pred             CEEEeCCCCCCCCCCHHHHHHHHHhhhhcCCCCCC------CCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHH
Confidence            67888888766 57889999988776433222221      111333334444444444873 23599999999999999


Q ss_pred             HHHHccCCCCCC--CCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccc
Q 017640          145 VAYSWGLSNLKS--GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLA  222 (368)
Q Consensus       145 ~~~~~~~~~~~~--gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG  222 (368)
                      ++.++    .++  ||+|++.+|+|++.    ...++..|.+++.++.++++.+++ ++++++.+++++|++++++||||
T Consensus        98 ~~~~~----~~~~~gd~vl~~~p~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~-~l~~~~~~~~~~v~~~~p~nptG  168 (376)
T 3ezs_A           98 FPSFV----LFDYQNPTIAYPNPFYQIY----EGAAKFIKAKSLLMPLTKENDFTP-SLNEKELQEVDLVILNSPNNPTG  168 (376)
T ss_dssp             HHHHH----TTTCSSCEEEEEESCCTHH----HHHHHHTTCEEEEEECCGGGTSCC-CCCHHHHHHCSEEEECSSCTTTC
T ss_pred             HHHHH----cCCCCCCEEEEecCCcHhH----HHHHHHcCCEEEEcccCCCCCcch-hHHhhhccCCCEEEEcCCCCCcC
Confidence            99998    788  99999999999874    444566799999999986644555 67777777889999999999999


Q ss_pred             cccC---HHHHHHHHHhcCCEEEEecCCcCCcc---cccC---------CCCCccEEEecCcCcCCCCc--ceEEEEccc
Q 017640          223 SILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVDV---------QGLDADFLVASSHKMCGPTG--IGFLFGKSD  285 (368)
Q Consensus       223 ~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~---~~~~---------~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~  285 (368)
                      .++|   +++|.++|++||+++|+|++|+....   +...         +..+.++++.|+||.+|.+|  +|+++.+++
T Consensus       169 ~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~  248 (376)
T 3ezs_A          169 RTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGDSR  248 (376)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEECHH
T ss_pred             CCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCccceeEEEeeCHH
Confidence            9999   66788889999999999999985322   1111         03567899999999998777  899999998


Q ss_pred             ccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Q 017640          286 LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQ  361 (368)
Q Consensus       286 li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~  361 (368)
                      +++.+......                     ...+.+.....++..+++...  .++.++++..++.+++.+.|.
T Consensus       249 ~~~~~~~~~~~---------------------~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~l~~~l~  301 (376)
T 3ezs_A          249 LLEKYKAFRAY---------------------LGYTSANAIQKASEAAWLDDR--HAEFFRNIYANNLKLARKIFK  301 (376)
T ss_dssp             HHHHHHHHHTT---------------------TCCCCCHHHHHHHHHHHHCSH--HHHHHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHhh---------------------hcCCCChHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHHhc
Confidence            88776543221                     123677778887777777422  257777888888888877765

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.94  E-value=4.1e-26  Score=216.18  Aligned_cols=209  Identities=13%  Similarity=0.167  Sum_probs=162.3

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHh-----hccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC-CCCcEEEeCCH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAY-----NSNVHRGIHFLSAKATDEYELARKKVAAFINAS-DSGEIVFTKNA  138 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~~v~~t~g~  138 (368)
                      ++++.|..+... ++++.+.+++.+.+...     ..++.      ..+..+..+.+.+.+.+.+|.+ .+++|++|+|+
T Consensus        35 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~------~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~  108 (398)
T 3ele_A           35 ENVYDFSIGNPSIPAPQIVNDTIKELVTDYDSVALHGYTS------AQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGA  108 (398)
T ss_dssp             GGCEECCSCCCCSCCCHHHHHHHHHHHHHSCHHHHHSCCC------TTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSH
T ss_pred             CCeEEeecCCCCCCCCHHHHHHHHHHHhcCCccccCCcCC------CCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCH
Confidence            567899888766 67899999999888762     21111      1111334444444555555643 23499999999


Q ss_pred             HHHHHHHHHHccCCCCCCC-CEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC-CCCCCHHHHHHhcccCceEEEEcc
Q 017640          139 TEAINLVAYSWGLSNLKSG-DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHH  216 (368)
Q Consensus       139 t~a~~~~~~~~~~~~~~~g-d~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~l~~~~~~v~~~~  216 (368)
                      ++++..++.++    +++| |+|++.+|+|++.    ...++..|++++.++.++ ++.+|+++|++++++++++|++++
T Consensus       109 ~~al~~~~~~l----~~~g~d~vl~~~p~~~~~----~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~  180 (398)
T 3ele_A          109 AASLSICFRAL----TSDAYDEFITIAPYFPEY----KVFVNAAGARLVEVPADTEHFQIDFDALEERINAHTRGVIINS  180 (398)
T ss_dssp             HHHHHHHHHHH----CCSTTCEEEEESSCCTHH----HHHHHHTTCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEEECS
T ss_pred             HHHHHHHHHHH----cCCCCCEEEEeCCCchhh----HHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhCcCCCEEEEcC
Confidence            99999999998    8899 9999999998884    444566799999999975 468899999999999999999999


Q ss_pred             cccccccccC---HHHHHHHHHh------cCCEEEEecCCcCCc-----ccccCCCCCccEEEecCcCcCCCCc--ceEE
Q 017640          217 ISNMLASILP---IEEIVHWSHD------VGAKVLVDACQSVPH-----MVVDVQGLDADFLVASSHKMCGPTG--IGFL  280 (368)
Q Consensus       217 ~~n~tG~~~~---l~~i~~l~~~------~g~~li~D~a~~~~~-----~~~~~~~~~~d~~~~s~~K~~g~~G--~G~l  280 (368)
                      ++||||.++|   +++|+++|++      ||+++|+|++|+...     .+......+.+++++|+||.+|++|  +|++
T Consensus       181 p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~  260 (398)
T 3ele_A          181 PNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLPGERIGYV  260 (398)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTSSCTTTCCEEE
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcCCCccceeEEE
Confidence            9999999999   6777789999      999999999998522     2222233467899999999998777  9999


Q ss_pred             EEcccccc
Q 017640          281 FGKSDLLS  288 (368)
Q Consensus       281 ~~~~~li~  288 (368)
                      ++++++++
T Consensus       261 ~~~~~~~~  268 (398)
T 3ele_A          261 LVPDEVYD  268 (398)
T ss_dssp             ECCTTSTT
T ss_pred             EEcchhhh
Confidence            99998654

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=99.94  E-value=4.2e-26  Score=219.66  Aligned_cols=261  Identities=14%  Similarity=0.178  Sum_probs=192.0

Q ss_pred             CCeEEeccCCCC---CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----CCCCCCcEEEeCCH
Q 017640           66 KKLVYLDNAATS---QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NASDSGEIVFTKNA  138 (368)
Q Consensus        66 ~~~i~l~~~~~~---~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~~~~~v~~t~g~  138 (368)
                      ++++.|..+.+.   .+++.+.+++.+.+......      ..++.......++|+++++++    |.+++++|++|+|+
T Consensus        76 ~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~~~------~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~  149 (448)
T 3aow_A           76 SDIISLAGGLPNPKTFPKEIIRDILVEIMEKYADK------ALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGS  149 (448)
T ss_dssp             SSSEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHH------HHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSH
T ss_pred             CCcEeCCCCCCCchhCCHHHHHHHHHHHHHhhhHH------HhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcH
Confidence            567888777654   36778888888877652100      000000122336777777777    88322499999999


Q ss_pred             HHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcc----c--CceEE
Q 017640          139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS----R--KTKLV  212 (368)
Q Consensus       139 t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~----~--~~~~v  212 (368)
                      ++++..++.++    +++||+|++.+|+|++..    ..++..|++++.++.++++ +|+++|+++++    +  ++++|
T Consensus       150 ~~al~~~~~~l----~~~Gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~g-~d~~~L~~~l~~~~~~~~~~k~v  220 (448)
T 3aow_A          150 QQALDLIGRVF----LNPGDIVVVEAPTYLAAL----QAFNFYEPQYIQIPLDDEG-MKVEILEEKLKELKSQGKKVKVV  220 (448)
T ss_dssp             HHHHHHHHHHH----CCTTCEEEEEESCCHHHH----HHHHTTCCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHHHH----cCCCCEEEEeCCChHHHH----HHHHHcCCEEEEeccCCCC-CCHHHHHHHHhhhhccCCCCeEE
Confidence            99999999998    889999999999888854    4455679999999987765 79999999997    5  78887


Q ss_pred             -EEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc------cc-cCCCCCccEEEecCcCcCCCCc--ceE
Q 017640          213 -VIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM------VV-DVQGLDADFLVASSHKMCGPTG--IGF  279 (368)
Q Consensus       213 -~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~------~~-~~~~~~~d~~~~s~~K~~g~~G--~G~  279 (368)
                       ++++++||||.++|   +++|.++|++||+++|+|++|+....      ++ .++..+.++++.|++|.+| +|  +||
T Consensus       221 ~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~-~GlriG~  299 (448)
T 3aow_A          221 YTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILA-PGFRIGW  299 (448)
T ss_dssp             EECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTC-GGGCCEE
T ss_pred             EECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhcc-ccccEEE
Confidence             57999999999998   56999999999999999999985432      11 2233357899999999999 77  899


Q ss_pred             EEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HhCHHHHHHHHHHHHHHHHH
Q 017640          280 LFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS-TIGMQKIHAYEVKWIICSII  358 (368)
Q Consensus       280 l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~-~~g~~~i~~~~~~l~~~l~~  358 (368)
                      +++++++++.+......+                     ..+.+.....++..+++... ...++.++++..+..+++.+
T Consensus       300 v~~~~~l~~~l~~~~~~~---------------------~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~  358 (448)
T 3aow_A          300 MVGDPGIIRKMEIAKQST---------------------DLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLE  358 (448)
T ss_dssp             EEECHHHHHHHHHHHHHH---------------------HSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCHHHHHHHHHHHHHh---------------------cCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999887765432211                     01446666666666665321 11366778888888899999


Q ss_pred             HHHhh
Q 017640          359 VIQER  363 (368)
Q Consensus       359 ~l~~~  363 (368)
                      .|.+.
T Consensus       359 ~L~~~  363 (448)
T 3aow_A          359 ALEEF  363 (448)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            88874

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.94  E-value=8.5e-26  Score=220.41  Aligned_cols=275  Identities=15%  Similarity=0.078  Sum_probs=205.8

Q ss_pred             EEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC--CCC--cEEEeCCHHHHHHH
Q 017640           69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS--DSG--EIVFTKNATEAINL  144 (368)
Q Consensus        69 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~--~~~--~v~~t~g~t~a~~~  144 (368)
                      +++.....+.+++.+.+++.+.+.....++     ...+...+..+++++++++++|++  +++  ..++|+|+++++.+
T Consensus        58 ~~l~s~~t~~~~~~v~~~l~~~~~~~~~~~-----~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~  132 (502)
T 3hbx_A           58 LNLASFVTTWMEPECDKLIMSSINKNYVDM-----DEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIML  132 (502)
T ss_dssp             GBTTCCSCCCCCHHHHHHHHHTTTCBTTCT-----TTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHH
T ss_pred             ceeccccCCCCCHHHHHHHHHHhccCCCCh-----hcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHH
Confidence            344444445778888888887664422221     223446778888999999999998  332  22469999999999


Q ss_pred             HHHHccCCCC----CCCC-----EEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC-CCCCHHHHHHhcccCceEEEE
Q 017640          145 VAYSWGLSNL----KSGD-----EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSRKTKLVVI  214 (368)
Q Consensus       145 ~~~~~~~~~~----~~gd-----~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~l~~~~~~v~~  214 (368)
                      ++.++.....    ++|+     +|+++.++|.+    +...++..|++++.|+++++ +.+|+++|++++++++++|++
T Consensus       133 a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s----~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~  208 (502)
T 3hbx_A          133 AGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVC----WEKFARYFEVELKEVKLSEGYYVMDPQQAVDMVDENTICVAA  208 (502)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHH----HHHHHHHTTCEEEEECCBTTBCSCCHHHHHHHCCTTEEEEEE
T ss_pred             HHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHH----HHHHHHHcCceeEEEecCCCcCcCCHHHHHHHHhhCCEEEEE
Confidence            9887621100    1255     89999998888    55567778999999999876 899999999999999999999


Q ss_pred             cccccccccccCHHHHHHHHHhc------CCEEEEecCCcCCc-------ccccCCCCCccEEEecCcCcC-CCCcceEE
Q 017640          215 HHISNMLASILPIEEIVHWSHDV------GAKVLVDACQSVPH-------MVVDVQGLDADFLVASSHKMC-GPTGIGFL  280 (368)
Q Consensus       215 ~~~~n~tG~~~~l~~i~~l~~~~------g~~li~D~a~~~~~-------~~~~~~~~~~d~~~~s~~K~~-g~~G~G~l  280 (368)
                      ++++|+||.+.|+++|.++|+++      |+++++|++|+.+.       .+.++...++|++++|+||++ +|.|+|++
T Consensus       209 ~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g~G~~  288 (502)
T 3hbx_A          209 ILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWV  288 (502)
T ss_dssp             EBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEE
T ss_pred             ecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCCCCeEEE
Confidence            99999999999999999999999      99999999998433       234444457999999999965 78889998


Q ss_pred             EEccc-cccc-CC--CcccCCcceeecccCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 017640          281 FGKSD-LLSA-MP--PFLGGGEMISDVFLDHSTFADPPSRF-EAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIIC  355 (368)
Q Consensus       281 ~~~~~-li~~-l~--~~~~g~~~~~~~~~~~~~~~~~~~~~-~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~  355 (368)
                      +++++ .+.. +.  +.+.++..               ..+ ..++.+...++++..++..+...|+..+.++..+++++
T Consensus       289 ~~~~~~~l~~~~~~~~~yl~~~~---------------~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~  353 (502)
T 3hbx_A          289 IWRNKEDLPEELIFHINYLGADQ---------------PTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIV  353 (502)
T ss_dssp             EESSGGGSCGGGCEEECSSSSCE---------------EECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCHHHhhHHhccCcccccCCC---------------CCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88753 3322 11  11111111               011 13456666778888889988887889999999999999


Q ss_pred             HHHHHHhhcCCC
Q 017640          356 SIIVIQERHNTT  367 (368)
Q Consensus       356 l~~~l~~~~g~t  367 (368)
                      +.+.|.++++++
T Consensus       354 l~~~L~~~~~~~  365 (502)
T 3hbx_A          354 LREGLEKTERFN  365 (502)
T ss_dssp             HHHHHHTTTCEE
T ss_pred             HHHHHHhCCCEE
Confidence            999999887654

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.94  E-value=6.5e-26  Score=221.24  Aligned_cols=284  Identities=12%  Similarity=0.055  Sum_probs=200.3

Q ss_pred             EEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHH
Q 017640           69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS  148 (368)
Q Consensus        69 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~  148 (368)
                      .||++...++.++.+.+++.....    +++...+..+....++.+++++++++++|.++.+.++||+|+|+|+..++.+
T Consensus       102 ~yl~~~~~~~~~~~v~~~~~~~~~----n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~  177 (497)
T 2qma_A          102 DCIAHLHTPPLMPAVAAEAMIAAL----NQSMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLML  177 (497)
T ss_dssp             TBCSSSCCCCBHHHHHHHHHHHHH----CCCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHH
T ss_pred             CeeEeCCCCCcHHHHHHHHHHHhh----cccccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHH
Confidence            599999999999999988866543    2222333444566777888999999999997545899999999999999887


Q ss_pred             ccCCCC---------CC------CC-EEEEcCCCCcccHHHHHHHHHHcCC---EEEEEeCCCCCCCCHHHHHHhcccC-
Q 017640          149 WGLSNL---------KS------GD-EVILTVAEHHSAIVPWQLVAQKTGA---NLKFLNLNDDESPDLDKLKEMLSRK-  208 (368)
Q Consensus       149 ~~~~~~---------~~------gd-~vl~~~~~~~s~~~~~~~~~~~~g~---~v~~v~~~~~~~~d~~~l~~~l~~~-  208 (368)
                      ++...+         .+      |+ .|+++.++|+++...    ++..|.   +++.+|.++++.+|+++|+++++++ 
T Consensus       178 ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~----~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~  253 (497)
T 2qma_A          178 ARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKS----ASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAK  253 (497)
T ss_dssp             HHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHH----HHHTTSCGGGEEEECBCTTSSBCGGGHHHHHHHHH
T ss_pred             HHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHH----HHHcCCCcccEEEEecCCCCcCCHHHHHHHHHHHH
Confidence            411001         12      46 799999999986544    344454   7999999888999999999999753 


Q ss_pred             -----ceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCccccc----CCCC-CccEEEecCcCc-CCCCcc
Q 017640          209 -----TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD----VQGL-DADFLVASSHKM-CGPTGI  277 (368)
Q Consensus       209 -----~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~----~~~~-~~d~~~~s~~K~-~g~~G~  277 (368)
                           +.+|++++++|+||.+.|+++|.++|++||+++++|++|+.+..+.+    +... ++|++++|+||+ ++|.|+
T Consensus       254 ~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p~~~  333 (497)
T 2qma_A          254 AEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSSHKSRLKGVERAHSISVDFHKLFYQTISC  333 (497)
T ss_dssp             HTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCCSSC
T ss_pred             HCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCcchHhhcCcccCCEEEEcchhccCCCcce
Confidence                 34889999999999999999999999999999999999997766444    2223 689999999995 557779


Q ss_pred             eEEEEcccc-cccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 017640          278 GFLFGKSDL-LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICS  356 (368)
Q Consensus       278 G~l~~~~~l-i~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l  356 (368)
                      |+++++++. ++.+..   ..............+  .....+ ++... ..+++..+++.+...|++.+.++..++++++
T Consensus       334 G~l~~~~~~~~~~~~~---~~~yl~~~~~~~~~~--~~~~~~-~~r~~-~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l  406 (497)
T 2qma_A          334 GALLVNDKSNFKFLLH---HADYLNREHDELPNL--VDKSIA-TTKRF-DALKVFMTMQNVGPKALGDMYDHLLAQTLEV  406 (497)
T ss_dssp             EEEEESCGGGGGGGCC-------------------------C-CSCCC-THHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeCHHHHHHhcC---CchhcCCccccCCCc--cccCCC-CCCch-hHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            999998754 333321   100000000000000  000001 11111 1234556677666667889999999999999


Q ss_pred             HHHHHhhcCCC
Q 017640          357 IIVIQERHNTT  367 (368)
Q Consensus       357 ~~~l~~~~g~t  367 (368)
                      .+.|+++++++
T Consensus       407 ~~~L~~~~~~~  417 (497)
T 2qma_A          407 ADMIRTNDQFE  417 (497)
T ss_dssp             HHHHHTCTTEE
T ss_pred             HHHHhhCCCeE
Confidence            99999877653

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.94  E-value=2.7e-26  Score=219.53  Aligned_cols=261  Identities=14%  Similarity=0.146  Sum_probs=191.2

Q ss_pred             CCeEEeccCCCC---CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----CCC--CCCcEEEeC
Q 017640           66 KKLVYLDNAATS---QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS--DSGEIVFTK  136 (368)
Q Consensus        66 ~~~i~l~~~~~~---~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~--~~~~v~~t~  136 (368)
                      ++++.|..+...   .+++.+.+++.+.+........  .+..    .....++|+.+++++    |.+  .+++|++|+
T Consensus        43 ~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~--~y~~----~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~  116 (425)
T 1vp4_A           43 KDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTL--QYST----TEGDPVLKQQILKLLERMYGITGLDEDNLIFTV  116 (425)
T ss_dssp             TTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHT--SCCC----TTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEE
T ss_pred             CCceeCCCCCCCcccCCHHHHHHHHHHHHhhcchhhc--CCCC----CCCCHHHHHHHHHHHHhccCCCCCCcccEEEec
Confidence            567888776543   3678899999888765210000  0100    112236777777777    842  224999999


Q ss_pred             CHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc--------C
Q 017640          137 NATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR--------K  208 (368)
Q Consensus       137 g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~--------~  208 (368)
                      |+++++..++.++    +++||+|++.+|+|++..    ..++..|++++.++.++++ +|+++|++++++        +
T Consensus       117 G~~~al~~~~~~l----~~~gd~Vl~~~p~y~~~~----~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~  187 (425)
T 1vp4_A          117 GSQQALDLIGKLF----LDDESYCVLDDPAYLGAI----NAFRQYLANFVVVPLEDDG-MDLNVLERKLSEFDKNGKIKQ  187 (425)
T ss_dssp             HHHHHHHHHHHHH----CCTTCEEEEEESCCHHHH----HHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCGGG
T ss_pred             cHHHHHHHHHHHh----CCCCCEEEEeCCCcHHHH----HHHHHcCCEEEEeccCCCC-CCHHHHHHHHHhhhhcccCCC
Confidence            9999999999998    789999999999888844    4455679999999987665 799999999876        7


Q ss_pred             ceEE-EEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc----cccC---CCCCccEEEecCcCcCCCCc-
Q 017640          209 TKLV-VIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VVDV---QGLDADFLVASSHKMCGPTG-  276 (368)
Q Consensus       209 ~~~v-~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~----~~~~---~~~~~d~~~~s~~K~~g~~G-  276 (368)
                      +++| ++++++||||.++|   +++|.++|++||+++|+|++|+....    ..++   +..+.+++++|+||.+| +| 
T Consensus       188 ~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~  266 (425)
T 1vp4_A          188 VKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-PGL  266 (425)
T ss_dssp             EEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-GGG
T ss_pred             ceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccc-ccc
Confidence            8887 58999999999998   57899999999999999999985321    1122   22356799999999999 77 


Q ss_pred             -ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-HHhCHHHHHHHHHHHHH
Q 017640          277 -IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL-STIGMQKIHAYEVKWII  354 (368)
Q Consensus       277 -~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~-~~~g~~~i~~~~~~l~~  354 (368)
                       +|++++++++++.+......+                     ..+.+.....++..+++.. ....++.++++..++.+
T Consensus       267 r~G~~~~~~~~~~~l~~~~~~~---------------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~  325 (425)
T 1vp4_A          267 RIGMVAGSKEFIRKIVQAKQSA---------------------DLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRT  325 (425)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHH---------------------HSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHH
T ss_pred             ceEEEeeCHHHHHHHHHHhhhh---------------------cCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence             799999998887765432211                     1144666777777777643 11236778888888999


Q ss_pred             HHHHHHHhh
Q 017640          355 CSIIVIQER  363 (368)
Q Consensus       355 ~l~~~l~~~  363 (368)
                      ++.+.|.+.
T Consensus       326 ~l~~~L~~~  334 (425)
T 1vp4_A          326 VMLNALEEY  334 (425)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998875

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.94  E-value=5.5e-26  Score=213.57  Aligned_cols=222  Identities=20%  Similarity=0.261  Sum_probs=177.8

Q ss_pred             HHHHHHHHHHcC-CCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC
Q 017640          114 ELARKKVAAFIN-ASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND  192 (368)
Q Consensus       114 ~~~r~~la~~~~-~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~  192 (368)
                      .++|+.++++++ .++ ++|++|+|+++|+..++.++    +++||+|++.+|.|++...    .++..|++++.+++++
T Consensus        66 ~~l~~~la~~~~~~~~-~~v~~~~g~~~a~~~~~~~l----~~~gd~Vl~~~~~~~~~~~----~~~~~g~~~~~v~~~~  136 (375)
T 3op7_A           66 PAFKKSVSQLYTGVKP-EQILQTNGATGANLLVLYSL----IEPGDHVISLYPTYQQLYD----IPKSLGAEVDLWQIEE  136 (375)
T ss_dssp             HHHHHHHHTTSSSCCG-GGEEEESHHHHHHHHHHHHH----CCTTCEEEEEESSCTHHHH----HHHHTTCEEEEEEEEG
T ss_pred             HHHHHHHHHHhccCCh-hhEEEcCChHHHHHHHHHHh----cCCCCEEEEeCCCchhHHH----HHHHcCCEEEEEeccc
Confidence            479999999984 444 49999999999999999998    8999999999999988543    4556799999999873


Q ss_pred             --CCCCCHHHHHHhcccCceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCccc-c-c-CCCCCccEE
Q 017640          193 --DESPDLDKLKEMLSRKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV-V-D-VQGLDADFL  264 (368)
Q Consensus       193 --~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~~-~-~-~~~~~~d~~  264 (368)
                        ++.+|+++|++++++++++|++++++||||.++|   +++|.++|++||+++|+|++|+..... . . .+..+.+++
T Consensus       137 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~  216 (375)
T 3op7_A          137 ENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGIA  216 (375)
T ss_dssp             GGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEEE
T ss_pred             cCCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhhcCCEEE
Confidence              3568999999999999999999999999999999   999999999999999999999853321 1 1 122356789


Q ss_pred             EecCcCcCCCCc--ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCH
Q 017640          265 VASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGM  342 (368)
Q Consensus       265 ~~s~~K~~g~~G--~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~  342 (368)
                      ++|++|.+|++|  +|++++++++++.++.....+                     ..+.+....+++..+++..+. .+
T Consensus       217 ~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~l~~~~~-~~  274 (375)
T 3op7_A          217 VNSLSKTYSLPGIRIGWVAANHQVTDILRDYRDYT---------------------MICAGVFDDLVAQLALAHYQE-IL  274 (375)
T ss_dssp             EEESSSSSSCGGGCCEEEECCHHHHHHHTTTGGGT---------------------TSCCCHHHHHHHHHHHHTHHH-HH
T ss_pred             EeEChhhcCCcccceEEEEeCHHHHHHHHHHHhhh---------------------ccCCCcHHHHHHHHHHhccHH-HH
Confidence            999999998777  799999999888776543221                     124566666666677775444 36


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          343 QKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       343 ~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      ++.+++..++.+++.+.|.+.+++
T Consensus       275 ~~~~~~~~~~~~~l~~~l~~~~~~  298 (375)
T 3op7_A          275 ERNRHILEENLAILDQWIEEEPLV  298 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTE
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCc
Confidence            777788888899999998876553

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.94  E-value=1.5e-25  Score=213.15  Aligned_cols=257  Identities=16%  Similarity=0.179  Sum_probs=195.3

Q ss_pred             CCeEEeccCCCC--CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHH
Q 017640           66 KKLVYLDNAATS--QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN  143 (368)
Q Consensus        66 ~~~i~l~~~~~~--~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~  143 (368)
                      +.+++|..+.+-  +.++.+.+++.+.+..+....+  .+....+..+..+++++++++++|.+   ..++++++++++.
T Consensus        59 ~~~ld~~s~~~l~~~~~p~v~~a~~~~l~~~~~~~~--~~~~~~g~~~~~~~l~~~la~~~g~~---~~i~~~sGt~a~~  133 (409)
T 3kki_A           59 PDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLF--MSASFLQNDYDKPMIEKRLAKFTGFD---ECLLSQSGWNANV  133 (409)
T ss_dssp             TTSEECCCSCTTCCTTCHHHHHHHHHHHHSCCCCCC--SBGGGGCSTTTSCHHHHHHHHHHTCS---EEEEESCHHHHHH
T ss_pred             CceEEeeccCccCCcCCHHHHHHHHHHHHHcCCCCC--ccccccCCcHHHHHHHHHHHHHhCCC---eEEEecchHHHHH
Confidence            556666665432  3578999999998876432221  11222222345568999999999986   3455566689999


Q ss_pred             HHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc-CceEEEEcccccccc
Q 017640          144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNMLA  222 (368)
Q Consensus       144 ~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG  222 (368)
                      .++.++    +++||.|++.++.|++....    ++..|++++.++..     |+++|++++++ ++++|++++++||||
T Consensus       134 ~~l~~~----~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~~~~~-----d~~~le~~l~~~~~~~vi~~~~~nptG  200 (409)
T 3kki_A          134 GLLQTI----CQPNTNVYIDFFAHMSLWEG----ARYANAQAHPFMHN-----NCDHLRMLIQRHGPGIIVVDSIYSTLG  200 (409)
T ss_dssp             HHHHHH----CCTTCEEEEETTSCHHHHHH----HHHTTCEEEEECTT-----CHHHHHHHHHHHCSCEEEEESBCTTTC
T ss_pred             HHHHHh----cCCCCEEEECCCcCHHHHHH----HHHcCCeEEEecCC-----CHHHHHHHHHhcCCeEEEECCCCCCCC
Confidence            999988    89999999999999886544    34559999888763     89999999976 589999999999999


Q ss_pred             cccCHHHHHHHHHhcCCEEEEecCCcCCccc---------ccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCc
Q 017640          223 SILPIEEIVHWSHDVGAKVLVDACQSVPHMV---------VDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPF  293 (368)
Q Consensus       223 ~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~---------~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~  293 (368)
                      .+.|+++|.++|++||+++|+|++|+.+...         .+. ..++|+++.|++|.+|+.| |++++++++++.+...
T Consensus       201 ~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~-~~~~di~~~s~sK~~~~~g-g~v~~~~~~~~~~~~~  278 (409)
T 3kki_A          201 TIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGL-TREVHFMTASLAKTFAYRA-GAIWCNNEVNRCVPFI  278 (409)
T ss_dssp             CBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTC-GGGCSEEEEESSSTTCSSC-EEEEESSSGGGTHHHH
T ss_pred             CcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCC-CCCCCEEEeecchhhCCCc-eEEEECHHHHHHHHHh
Confidence            9999999999999999999999999865431         112 1257899999999998775 9999999988765532


Q ss_pred             ccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          294 LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       294 ~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      ...+                  .+ .++.+...++++.++++.++..  +.++++..++.+++.+.|.+.
T Consensus       279 ~~~~------------------~~-~~~~~~~~~aa~~aal~~~~~~--~~~~~~~~~~~~~l~~~L~~~  327 (409)
T 3kki_A          279 SYPA------------------IF-SSTLLPYEAAGLETTLEIIESA--DNRRQHLDRMARKLRIGLSQL  327 (409)
T ss_dssp             CHHH------------------HH-SBCCCHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHTT
T ss_pred             CcCc------------------cc-cCCCcHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHc
Confidence            2110                  11 1246677778888888888764  778889999999999999876

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.94  E-value=1.7e-25  Score=207.19  Aligned_cols=245  Identities=13%  Similarity=0.107  Sum_probs=189.5

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHH--hhccCCCCcchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEA--YNSNVHRGIHFLSAKATDEYELARKKVAAFIN---ASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~---~~~~~~v~~t~g~t  139 (368)
                      +++++|+.+.++ ++++.+.+++.+.+..  ...++.           ....++|+.++++++   .++ ++|++|+|++
T Consensus        19 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-----------~~~~~lr~~la~~~~~~~~~~-~~v~~~~G~~   86 (335)
T 1uu1_A           19 RDKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYYD-----------SPDEELIEKILSYLDTDFLSK-NNVSVGNGAD   86 (335)
T ss_dssp             CCSEEESSCCCSSCCCHHHHHHHHHTCCGGGGGSCCC-----------SSCHHHHHHHHHHHTCSSCCG-GGEEEESSHH
T ss_pred             CcceECCCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC-----------CchHHHHHHHHHHcCCCCCCH-HHEEEcCChH
Confidence            357999999886 5789999999887632  111111           124489999999999   665 4999999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEccccc
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISN  219 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n  219 (368)
                      +++..++.++       ||+|++. |+|++..    ..++..|++++.++.++++.+|+++|     +++++|++++++|
T Consensus        87 ~al~~~~~~~-------gd~Vl~~-p~y~~~~----~~~~~~g~~~~~v~~~~~~~~d~~~l-----~~~~~v~l~~p~n  149 (335)
T 1uu1_A           87 EIIYVMMLMF-------DRSVFFP-PTYSCYR----IFAKAVGAKFLEVPLTKDLRIPEVNV-----GEGDVVFIPNPNN  149 (335)
T ss_dssp             HHHHHHHHHS-------SEEEECS-SSCHHHH----HHHHHHTCEEEECCCCTTSCCCCCCC-----CTTEEEEEESSCT
T ss_pred             HHHHHHHHHh-------CCcEEEC-CCcHHHH----HHHHHcCCeEEEeccCCCCCCCHHHc-----CCCCEEEEeCCCC
Confidence            9999999864       8999999 9888744    44556699999999887777888776     5789999999999


Q ss_pred             ccccccCHHHHHHHHHhcCCEEEEecCCcCCcc-c-cc-CCCCCccEEEecCcCcCCCCc--ceEEEEcccccccCCCcc
Q 017640          220 MLASILPIEEIVHWSHDVGAKVLVDACQSVPHM-V-VD-VQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFL  294 (368)
Q Consensus       220 ~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~-~-~~-~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~~~~  294 (368)
                      |||.++|.+++.++++.+| ++|+|++|+.... + ++ ++..+.+++++|+||.+|++|  +|++++++++++.+.+..
T Consensus       150 ptG~~~~~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~  228 (335)
T 1uu1_A          150 PTGHVFEREEIERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVR  228 (335)
T ss_dssp             TTCCCCCHHHHHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHS
T ss_pred             CCCCCCCHHHHHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEEEEecchhhcCCcccCeEEEEeCHHHHHHHHHhc
Confidence            9999999999999999889 9999999983111 1 22 233457899999999999778  899999998877665332


Q ss_pred             cCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          295 GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       295 ~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      .                       ..+.+.....++..+++...  .++.++++.+++.+++.+.|.+. |+
T Consensus       229 ~-----------------------~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~  274 (335)
T 1uu1_A          229 L-----------------------PFNVSYVSQMFAKVALDHRE--IFEERTKFIVEERERMKSALREM-GY  274 (335)
T ss_dssp             C-----------------------TTCSCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHH-TC
T ss_pred             C-----------------------CCCcCHHHHHHHHHHhCCHH--HHHHHHHHHHHHHHHHHHHHHHC-Cc
Confidence            1                       12677777777777777522  36778888889999999999876 54

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.94  E-value=5.3e-26  Score=217.65  Aligned_cols=259  Identities=14%  Similarity=0.137  Sum_probs=189.1

Q ss_pred             CCeEEeccCCCCCCcHHHHHHHHHHH------------HHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcC--------
Q 017640           66 KKLVYLDNAATSQKPIAVLKALQNYY------------EAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN--------  125 (368)
Q Consensus        66 ~~~i~l~~~~~~~~~~~v~~a~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~--------  125 (368)
                      .+++.|+.+.....++.+.+++.+..            .....++..          ....++|+.++++++        
T Consensus        36 ~~~i~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~----------~g~~~lr~~la~~~~~~~g~~~~  105 (428)
T 1iay_A           36 NGVIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDY----------HGLPEFRKAIAKFMEKTRGGRVR  105 (428)
T ss_dssp             TSBEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCT----------TCCHHHHHHHHHHHHHHTTTCSC
T ss_pred             CceeeeccccchhhHHHHHHHHHhccccccccccccccHhhcCCCCC----------CCcHHHHHHHHHHHHHhcCCCCC
Confidence            46889988877766777887776431            111122211          113367888888876        


Q ss_pred             CCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC--CCCCCHHHHHH
Q 017640          126 ASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKE  203 (368)
Q Consensus       126 ~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~  203 (368)
                      .++ ++|++|+|+++++..++.++    +++||+|++.+|+|++....   ++...|++++.++.++  ++.+|+++|++
T Consensus       106 ~~~-~~i~~~~G~~~ai~~~~~~~----~~~gd~Vl~~~p~y~~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~  177 (428)
T 1iay_A          106 FDP-ERVVMAGGATGANETIIFCL----ADPGDAFLVPSPYYPAFNRD---LRWRTGVQLIPIHCESSNNFKITSKAVKE  177 (428)
T ss_dssp             CCT-TSCEEEEHHHHHHHHHHHHH----CCTTCEEEEESSCCTTHHHH---TTTTTCCEEEEECCCTTTTTCCCHHHHHH
T ss_pred             CCh-hhEEEccChHHHHHHHHHHh----CCCCCeEEEccCCCcchHHH---HHHhcCCEEEEeecCCccCCcCCHHHHHH
Confidence            444 48999999999999999998    78999999999999985432   2345699999999874  35789999999


Q ss_pred             hccc------CceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc------cc-cCCC------CCc
Q 017640          204 MLSR------KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM------VV-DVQG------LDA  261 (368)
Q Consensus       204 ~l~~------~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~------~~-~~~~------~~~  261 (368)
                      ++++      ++++|++++++||||.++|   +++|.++|++||+++|+|++|+....      ++ .+..      .++
T Consensus       178 ~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (428)
T 1iay_A          178 AYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNK  257 (428)
T ss_dssp             HHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCT
T ss_pred             HHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCC
Confidence            8863      6899999999999999999   99999999999999999999984221      11 1111      124


Q ss_pred             c--EEEecCcCcCCCCc--ceEEEE-cccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 017640          262 D--FLVASSHKMCGPTG--IGFLFG-KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY  336 (368)
Q Consensus       262 d--~~~~s~~K~~g~~G--~G~l~~-~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~  336 (368)
                      |  +++.|+||.+|.+|  +|++++ ++++++.++....                       ..+.+..+..++..+++.
T Consensus       258 d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~a~~~~l~~  314 (428)
T 1iay_A          258 DLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSS-----------------------FGLVSTQTQYFLAAMLSD  314 (428)
T ss_dssp             TSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHT-----------------------TSCCCHHHHHHHHHHTTC
T ss_pred             CcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHHHh-----------------------cccCCHHHHHHHHHHhcC
Confidence            5  88999999999888  699998 5667665542210                       124566666666666654


Q ss_pred             HH--HhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          337 LS--TIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       337 ~~--~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      ..  +..++.++++..++.+++.+.|.++ |+
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~  345 (428)
T 1iay_A          315 EKFVDNFLRESAMRLGKRHKHFTNGLEVV-GI  345 (428)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence            32  1135678888889999999999876 54

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=99.94  E-value=1.2e-25  Score=213.54  Aligned_cols=216  Identities=19%  Similarity=0.184  Sum_probs=168.5

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      .+..+++++++++++|.+   ++++++|+++|+..++.++    +++||+|++++|.|+++...+...++..|++++.++
T Consensus        61 ~~~~~~l~~~ia~~~g~~---~~i~~~~g~~ai~~~~~~l----~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~  133 (404)
T 1e5e_A           61 NPTVSNLEGKIAFLEKTE---ACVATSSGMGAIAATVLTI----LKAGDHLISDECLYGCTHALFEHALTKFGIQVDFIN  133 (404)
T ss_dssp             CHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHH----CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred             ChHHHHHHHHHHHHhCCC---cEEEeCChHHHHHHHHHHH----hCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEEC
Confidence            456678999999999985   6777778889999999988    789999999999999987766666778899999999


Q ss_pred             CCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHh-cCCEEEEecCCcCCcccccCCCCCccEEEecC
Q 017640          190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHD-VGAKVLVDACQSVPHMVVDVQGLDADFLVASS  268 (368)
Q Consensus       190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~-~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~  268 (368)
                      .+     |+++|++++++++++|++++++||||.++|+++|.++|++ ||+++|+|++|+.+.....+ ..+.|+++.|+
T Consensus       134 ~~-----d~~~l~~~i~~~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~~~~-~~~~di~~~S~  207 (404)
T 1e5e_A          134 TA-----IPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPV-DFGVDVVVHSA  207 (404)
T ss_dssp             TT-----STTHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGG-GGTCSEEEEET
T ss_pred             CC-----CHHHHHHhcCCCCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhCCcc-ccCCEEEEEcC
Confidence            86     8899999999999999999999999999999999999999 99999999999977632112 35799999999


Q ss_pred             cCcCCCCc---ceEEEEcccccc-cCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHH
Q 017640          269 HKMCGPTG---IGFLFGKSDLLS-AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQK  344 (368)
Q Consensus       269 ~K~~g~~G---~G~l~~~~~li~-~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~  344 (368)
                      ||++|.+|   +|++++++++++ .+.+...++                    ..++.+.....++..+++.     ++.
T Consensus       208 sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~--------------------~g~~~~~~~~~~~~~~l~~-----~~~  262 (404)
T 1e5e_A          208 TKYINGHTDVVAGLICGKADLLQQIRMVGIKDI--------------------TGSVISPHDAWLITRGLST-----LNI  262 (404)
T ss_dssp             TTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCC--------------------CCCCCCHHHHHHHHHHHTT-----HHH
T ss_pred             ccccCCCCCCeEEEEEECHHHHHHHHHHHHHhC--------------------CCCCCCHHHHHHHHHhHhH-----HHH
Confidence            99887665   499999998887 666544322                    0113444444444445442     233


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q 017640          345 IHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       345 i~~~~~~l~~~l~~~l~~~  363 (368)
                      ..++..+.+..+.+.+++.
T Consensus       263 ~~~~~~~~~~~l~~~l~~~  281 (404)
T 1e5e_A          263 RMKAESENAMKVAEYLKSH  281 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHhC
Confidence            3444555666666666554

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.94  E-value=5.3e-25  Score=215.17  Aligned_cols=282  Identities=13%  Similarity=0.069  Sum_probs=202.0

Q ss_pred             EeccCCCCCCcHHHH-HHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCC-CCcEEEeCCHHHHHHHHHH
Q 017640           70 YLDNAATSQKPIAVL-KALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD-SGEIVFTKNATEAINLVAY  147 (368)
Q Consensus        70 ~l~~~~~~~~~~~v~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~-~~~v~~t~g~t~a~~~~~~  147 (368)
                      |+++-..+..++.+. +.+...+.   .+  ...+..++...++.+++++++++++|.+. ...++||+|+|+|+..++.
T Consensus        98 f~~~~~~~~~~~~~~~e~l~~~~~---~~--~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~  172 (511)
T 3vp6_A           98 FFNQLSTGLDIIGLAGEWLTSTAN---TN--MFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIM  172 (511)
T ss_dssp             EESSSSCCCCHHHHHHHHHHHHHC---CC--SSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHH
T ss_pred             ceEeecCCCcHHHHHHHHHHHHhc---cC--CCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHH
Confidence            677655454444443 44444432   22  23445566778888899999999999984 2489999999999999888


Q ss_pred             HccCCC----------CCCCCEEEEcCCCCcccHHHHHHHHHHcCC---EEEEEeCCCCCCCCHHHHHHhcccC------
Q 017640          148 SWGLSN----------LKSGDEVILTVAEHHSAIVPWQLVAQKTGA---NLKFLNLNDDESPDLDKLKEMLSRK------  208 (368)
Q Consensus       148 ~~~~~~----------~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~---~v~~v~~~~~~~~d~~~l~~~l~~~------  208 (368)
                      ++....          ..+++.|+++...|+++.    ..++..|.   +++.|+.++++.+|+++|+++|+++      
T Consensus       173 ~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~----~~~~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~  248 (511)
T 3vp6_A          173 AARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIK----KAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYV  248 (511)
T ss_dssp             HHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHH----HHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCE
T ss_pred             HHHHHhhhhhhhcCcccCCCeEEEECCCchHHHH----HHHHHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCC
Confidence            762110          015778999999999854    44556677   8999999989999999999999765      


Q ss_pred             ceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCccccc-----CC-CCCccEEEecCcCcC-CCCcceEEE
Q 017640          209 TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD-----VQ-GLDADFLVASSHKMC-GPTGIGFLF  281 (368)
Q Consensus       209 ~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~-----~~-~~~~d~~~~s~~K~~-g~~G~G~l~  281 (368)
                      +++|++++++|+||.+.|+++|+++|++||+++++|++|+.+....+     +. ..+.|++++++||++ +|.|+|+++
T Consensus       249 ~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~  328 (511)
T 3vp6_A          249 PFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAIL  328 (511)
T ss_dssp             EEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEE
T ss_pred             cEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEE
Confidence            89999999999999999999999999999999999999997766221     11 125799999999965 577899999


Q ss_pred             Eccc-ccccC----CCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 017640          282 GKSD-LLSAM----PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICS  356 (368)
Q Consensus       282 ~~~~-li~~l----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l  356 (368)
                      ++++ +++..    .+++.+........     +.......+.+.+  ...+++..+++.+...|++.+.++..++++++
T Consensus       329 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~-----~~~~~~~~~~~r~--~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l  401 (511)
T 3vp6_A          329 VKEKGILQGCNQMHASYLFQQDKHYDVS-----YDTGDKAIQCGRH--VDIFKFWLMWKAKGTVGFENQINKCLELAEYL  401 (511)
T ss_dssp             ESSTTHHHHHHCCCCTTTCCSSCSSCGG-----GCCGGGSSCSSCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeCHHHHHHHhccCCccccCcccccccc-----cCccCCCCCCCCc--hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            9775 33332    12222111100000     0001112222222  14566777888888888999999999999999


Q ss_pred             HHHHHhhcCCC
Q 017640          357 IIVIQERHNTT  367 (368)
Q Consensus       357 ~~~l~~~~g~t  367 (368)
                      .+.|++++|++
T Consensus       402 ~~~L~~~pg~~  412 (511)
T 3vp6_A          402 YAKIKNREEFE  412 (511)
T ss_dssp             HHHHHSCTTEE
T ss_pred             HHHHhcCCCEE
Confidence            99999887764

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.94  E-value=1.8e-25  Score=212.00  Aligned_cols=252  Identities=17%  Similarity=0.123  Sum_probs=183.9

Q ss_pred             CeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHH
Q 017640           67 KLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVA  146 (368)
Q Consensus        67 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~  146 (368)
                      .+.+.++.+.....+.+.+++..+.     ++. +.+..+....+..+++++++++++|.+   ++++++++++|+..++
T Consensus        26 ~~~~~d~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~l~~~la~~~g~~---~~i~~~sG~~a~~~~l   96 (398)
T 2rfv_A           26 ALSTPIFQTSTFVFDSAEQGAARFA-----LEE-SGYIYTRLGNPTTDALEKKLAVLERGE---AGLATASGISAITTTL   96 (398)
T ss_dssp             CSSCCCCCCSBCCCSSHHHHHHHC-----------CCSBTTTCCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHH
T ss_pred             CcCCCCcCCCccccCCHHHHHHhhc-----CCC-CCCceeCCCChHHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHH
Confidence            3456677666666666666654211     111 112222223566778999999999986   5566666779999999


Q ss_pred             HHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccC
Q 017640          147 YSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILP  226 (368)
Q Consensus       147 ~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~  226 (368)
                      .++    +++||+|++.+++|+++...+...++..|.+++.++.+     |++++++++++++++|++++++||||.++|
T Consensus        97 ~~~----~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~  167 (398)
T 2rfv_A           97 LTL----CQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAA-----KPEEIRAAMRPETKVVYIETPANPTLSLVD  167 (398)
T ss_dssp             HHH----CCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT-----SHHHHHHHCCTTEEEEEEESSBTTTTBCCC
T ss_pred             HHH----hCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCC-----CHHHHHHhcCCCCeEEEEECCCCCCCcccC
Confidence            998    78999999999999998877766667789999999976     899999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCc---ceEEEEcccccc-cCCCcccCCcceee
Q 017640          227 IEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTG---IGFLFGKSDLLS-AMPPFLGGGEMISD  302 (368)
Q Consensus       227 l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G---~G~l~~~~~li~-~l~~~~~g~~~~~~  302 (368)
                      +++|.++|++||+++|+|++|+.+...... ..+.|+++.|+||+++.+|   +|++++++++++ .+++...+.     
T Consensus       168 l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~-----  241 (398)
T 2rfv_A          168 IETVAGIAHQQGALLVVDNTFMSPYCQQPL-QLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDI-----  241 (398)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTTCTTTCCGG-GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHT-----
T ss_pred             HHHHHHHHHHcCCEEEEECCCcccccCCch-hhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHhC-----
Confidence            999999999999999999999977653222 3579999999999886554   499999998876 454433211     


Q ss_pred             cccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHh
Q 017640          303 VFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       303 ~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~  362 (368)
                                     ..++.+.....++..+++.+..     ..++..+....+.+.+.+
T Consensus       242 ---------------~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~l~~~l~~  281 (398)
T 2rfv_A          242 ---------------TGGCMSPFNAWLTLRGVKTLGI-----RMERHCENALKIARFLEG  281 (398)
T ss_dssp             ---------------TCCCCCHHHHHHHHHHHTTHHH-----HHHHHHHHHHHHHHHHHT
T ss_pred             ---------------CCCCCCHHHHHHHHhhhhhHHH-----HHHHHHHHHHHHHHHHHc
Confidence                           1235666666666666654322     223344455555555554

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.94  E-value=1.6e-25  Score=213.08  Aligned_cols=170  Identities=12%  Similarity=0.132  Sum_probs=147.0

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEE
Q 017640          109 ATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL  188 (368)
Q Consensus       109 ~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v  188 (368)
                      ..+..+++++.+|+++|.+   ++++++|+++|+.+++.++    +++||+|+++++.|+++...+...++..|++++++
T Consensus        80 ~~p~~~~le~~lA~l~g~~---~~i~~ssGt~Ai~~al~~l----~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v  152 (415)
T 2fq6_A           80 GTLTHFSLQQAMCELEGGA---GCVLFPCGAAAVANSILAF----IEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWF  152 (415)
T ss_dssp             CCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHTT----CCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEE
T ss_pred             CCchHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHH----hCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEE
Confidence            3466778999999999985   4566788899999999987    78999999999999998877766667789999999


Q ss_pred             eCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHh--cCCEEEEecCCcCCcccccCCCCCccEEEe
Q 017640          189 NLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHD--VGAKVLVDACQSVPHMVVDVQGLDADFLVA  266 (368)
Q Consensus       189 ~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~--~g~~li~D~a~~~~~~~~~~~~~~~d~~~~  266 (368)
                      +.+     |+++|++++++++++|++++++||||.+.|+++|.++|++  ||+++++|++|+.+.....+ .++.|++++
T Consensus       153 ~~~-----d~~~le~ai~~~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~-~~g~Div~~  226 (415)
T 2fq6_A          153 DPL-----IGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKAL-DFGIDVSIQ  226 (415)
T ss_dssp             CTT-----CGGGGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGG-GGTCSEEEE
T ss_pred             CCC-----CHHHHHHhhccCCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccCCcc-ccCCeEEEE
Confidence            875     8999999999999999999999999999999999999999  99999999999965431112 357999999


Q ss_pred             cCcCcCCCCc---ceEEEEcccccccCC
Q 017640          267 SSHKMCGPTG---IGFLFGKSDLLSAMP  291 (368)
Q Consensus       267 s~~K~~g~~G---~G~l~~~~~li~~l~  291 (368)
                      |+||++|++|   +|++++++++++.++
T Consensus       227 S~sK~lg~~g~~~~G~l~~~~~~~~~l~  254 (415)
T 2fq6_A          227 AATKYLVGHSDAMIGTAVCNARCWEQLR  254 (415)
T ss_dssp             ETTTTTTCSSSCCCEEEEECTTTHHHHH
T ss_pred             eCccccCCCCCceEEEEEeCHHHHHHHH
Confidence            9999999877   699999988776554

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.94  E-value=1.1e-25  Score=215.89  Aligned_cols=267  Identities=15%  Similarity=0.116  Sum_probs=186.8

Q ss_pred             CCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCC---cchhhHHHHHHHHHHHHHHHHHcC--------CCCCCcEEE
Q 017640           66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRG---IHFLSAKATDEYELARKKVAAFIN--------ASDSGEIVF  134 (368)
Q Consensus        66 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~r~~la~~~~--------~~~~~~v~~  134 (368)
                      .+++.|+.+......+.+.+++.+............   ....++.......++|+.++++++        +++ ++|++
T Consensus        38 ~~~i~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~-~~v~~  116 (435)
T 3piu_A           38 NGIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDP-NHLVL  116 (435)
T ss_dssp             TSBEECSSCCCCSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCG-GGEEE
T ss_pred             CCeEEeccccccccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCH-HHEEE
Confidence            578999998888777777777765433211000000   000111112233578888888887        334 49999


Q ss_pred             eCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC--CCCCHHHHHHhccc-----
Q 017640          135 TKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSR-----  207 (368)
Q Consensus       135 t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~l~~-----  207 (368)
                      |+|+++|+..++.++    .++||.|++.+|.|++....+.   ...|++++.++++++  +.+|+++|++++++     
T Consensus       117 ~~gg~~a~~~~~~~l----~~~gd~vl~~~p~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~  189 (435)
T 3piu_A          117 TAGATSANETFIFCL----ADPGEAVLIPTPYYPGFDRDLK---WRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRN  189 (435)
T ss_dssp             EEHHHHHHHHHHHHH----CCTTCEEEEEESCCTTHHHHTT---TTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTT
T ss_pred             cCChHHHHHHHHHHh----cCCCCeEEECCCccccHHHHHH---HhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcC
Confidence            999999999999998    8899999999999998654322   146999999998753  56899999999976     


Q ss_pred             -CceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc----cccC----CC---------CCccEEEe
Q 017640          208 -KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VVDV----QG---------LDADFLVA  266 (368)
Q Consensus       208 -~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~----~~~~----~~---------~~~d~~~~  266 (368)
                       ++++|++++++||||.++|   +++|.++|++||+++|+|++|+.+..    ....    .+         .+.+++++
T Consensus       190 ~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~  269 (435)
T 3piu_A          190 LRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVY  269 (435)
T ss_dssp             CCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEE
T ss_pred             CCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEE
Confidence             7899999999999999999   57888899999999999999984221    1111    11         23448899


Q ss_pred             cCcCcCCCCc--ceEEEEc-ccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH--HhC
Q 017640          267 SSHKMCGPTG--IGFLFGK-SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS--TIG  341 (368)
Q Consensus       267 s~~K~~g~~G--~G~l~~~-~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~--~~g  341 (368)
                      |+||.+|.+|  +|+++++ +++++.++....                       .++.+.....++...++...  +..
T Consensus       270 s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~l~~~~~~~~~  326 (435)
T 3piu_A          270 SLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS-----------------------FGLVSSQTQHLLSAMLSDKKLTKNY  326 (435)
T ss_dssp             ESSSSSCCGGGCEEEEEESCHHHHHHHHHHGG-----------------------GSCCCHHHHHHHHHHHHCHHHHHHH
T ss_pred             eeecccCCCceeEEEEEeCCHHHHHHHHHHhh-----------------------cCCCCHHHHHHHHHHhcChHHHHHH
Confidence            9999999777  8999995 445444432110                       11345555555555555322  113


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Q 017640          342 MQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       342 ~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      ++..+++..++.+++.+.|.+.
T Consensus       327 ~~~~~~~~~~~~~~l~~~L~~~  348 (435)
T 3piu_A          327 IAENHKRLKQRQKKLVSGLQKS  348 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            5677788888888898888765

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.94  E-value=1.8e-25  Score=215.19  Aligned_cols=268  Identities=16%  Similarity=0.118  Sum_probs=190.6

Q ss_pred             CCCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----CCCCCCcEEEeCCHH
Q 017640           65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NASDSGEIVFTKNAT  139 (368)
Q Consensus        65 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~~~~~v~~t~g~t  139 (368)
                      ++++++|+.+..+ +.++.+.+++.+.+...........+    .......++|+++++++    +.+++ +|++|+|++
T Consensus        68 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y----~~~~g~~~lr~~ia~~~~~g~~~~~~-~i~~t~G~~  142 (449)
T 3qgu_A           68 DAKIISLGIGDTTEPLPKYIADAMAKAAAGLATREGYSGY----GAEQGQGALREAVASTFYGHAGRAAD-EIFISDGSK  142 (449)
T ss_dssp             TCCCEECSSCCCCCCCCHHHHHHHHHHHHGGGGSCCCCCS----TTTTCCHHHHHHHHHHHHTTTTCCGG-GEEEESCHH
T ss_pred             CCCEEEeeCCCCCCCCCHHHHHHHHHHHHhhccccCCCCC----CCCCCcHHHHHHHHHHHHcCCCCCHH-HEEEccCHH
Confidence            3678999999877 68899999999988865322111111    11233457899999988    55554 999999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCE----------EEEEeCCCC--CCCCHHHHHHhccc
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGAN----------LKFLNLNDD--ESPDLDKLKEMLSR  207 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~----------v~~v~~~~~--~~~d~~~l~~~l~~  207 (368)
                      +++..+ .++    +++||+|++.+|+|++....    ++..|.+          ++.++++++  ...|++++     +
T Consensus       143 ~al~~~-~~l----~~~gd~Vl~~~p~~~~~~~~----~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  208 (449)
T 3qgu_A          143 CDIARI-QMM----FGSKPTVAVQDPSYPVYVDT----SVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA-----K  208 (449)
T ss_dssp             HHHHHH-HHH----HCSSSCEEEEESCCTHHHHH----HHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC-----C
T ss_pred             HHHHHH-HHH----hCCCCEEEEcCCCChhHHHH----HHHcCCcccccccccceeEEEecccccCCcCChhHc-----C
Confidence            999998 777    78999999999999885543    4455888          999998754  33343321     5


Q ss_pred             CceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCC----cccccC---CC-CCccEEEecCcCcCCCCc
Q 017640          208 KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVP----HMVVDV---QG-LDADFLVASSHKMCGPTG  276 (368)
Q Consensus       208 ~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~----~~~~~~---~~-~~~d~~~~s~~K~~g~~G  276 (368)
                      ++++|++++++||||.++|   +++|+++|++||+++|+|++|+..    ..+..+   .. .+.++++.|+||.+|++|
T Consensus       209 ~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G  288 (449)
T 3qgu_A          209 RTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTG  288 (449)
T ss_dssp             CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTT
T ss_pred             CCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCcc
Confidence            7899999999999999998   778888899999999999999852    111222   11 356799999999998777


Q ss_pred             --ceEEEEccccccc-CCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Q 017640          277 --IGFLFGKSDLLSA-MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWI  353 (368)
Q Consensus       277 --~G~l~~~~~li~~-l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~  353 (368)
                        +|++++++++++. ..+....+..              .......+.+.....++..+++......++.++++..++.
T Consensus       289 ~r~G~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  354 (449)
T 3qgu_A          289 VRLGWTVVPKALKYANGEPVHADWNR--------------VMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENA  354 (449)
T ss_dssp             CCCEEEECCTTCBCTTSCBHHHHHHH--------------HHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred             ceeEEEecCHHHHhhhhhhHHHHHHH--------------HhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence              8999999988763 0000000000              0011122566777777766666422234678888999999


Q ss_pred             HHHHHHHHhhcCC
Q 017640          354 ICSIIVIQERHNT  366 (368)
Q Consensus       354 ~~l~~~l~~~~g~  366 (368)
                      +++.+.|.+. |+
T Consensus       355 ~~l~~~L~~~-g~  366 (449)
T 3qgu_A          355 QILKTTFTEM-GF  366 (449)
T ss_dssp             HHHHHHHHHT-TC
T ss_pred             HHHHHHHHHC-CC
Confidence            9999999876 44

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.94  E-value=7.2e-26  Score=214.71  Aligned_cols=265  Identities=17%  Similarity=0.137  Sum_probs=192.3

Q ss_pred             EEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEE-eCCHHHHHHHHHH
Q 017640           69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVF-TKNATEAINLVAY  147 (368)
Q Consensus        69 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~-t~g~t~a~~~~~~  147 (368)
                      ++..+.+..++|+.+++++.++.     +...+....+....+..+++|+.+++++|++++++|++ |+|+|+++.+++.
T Consensus        41 ~~~~~~~~~~~~~~v~~a~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~  115 (398)
T 2fyf_A           41 DGRFGSGPSKVRLEQLQTLTTTA-----AALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAF  115 (398)
T ss_dssp             SCBCCSSSCCCCHHHHHGGGTTT-----TTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHH
T ss_pred             CccccCCCCCCCHHHHHHHhhcC-----CCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHH
Confidence            34555666788999999887631     01001112223446678899999999999985458998 9999999999999


Q ss_pred             HccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHc--CCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEccccccccccc
Q 017640          148 SWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKT--GANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASIL  225 (368)
Q Consensus       148 ~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~--g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~  225 (368)
                      ++    +++| .+.+....|..   .+...+...  |++++.++.+.+...+.     .+++++++|++++++||||.++
T Consensus       116 ~l----~~~g-v~~v~~~~~~~---~~~~~~~~~~~g~~~~~v~~~~g~~~~~-----~i~~~~~~v~~~~~~nptG~~~  182 (398)
T 2fyf_A          116 GL----IDKR-SLHLTYGEFSA---KFASAVSKNPFVGEPIIITSDPGSAPEP-----QTDPSVDVIAWAHNETSTGVAV  182 (398)
T ss_dssp             HT----CSSC-EEEEECSHHHH---HHHHHHHHCTTSCCCEEEECCTTCCCCC-----CCCTTCSEEEEESEETTTTEEC
T ss_pred             Hh----cCCC-eEEEeCCHHHH---HHHHHHHHhCCCCceEEEecCCCCCCCc-----cccCCCCEEEEeCcCCCcceec
Confidence            98    6777 33334443322   122234555  78889999873333232     2567899999999999999999


Q ss_pred             CHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCC-cceEEEEcccccccCCC----------cc
Q 017640          226 PIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPT-GIGFLFGKSDLLSAMPP----------FL  294 (368)
Q Consensus       226 ~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~-G~G~l~~~~~li~~l~~----------~~  294 (368)
                      |+++|.++   +|+++|+|++|+.+..++++.  ++|++++|+||++|++ |+|++++++++++.+++          +.
T Consensus       183 ~~~~i~~~---~~~~vivD~a~~~~~~~~~~~--~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~~~~~~~~~~~  257 (398)
T 2fyf_A          183 AVRRPEGS---DDALVVIDATSGAGGLPVDIA--ETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGRWVPDFL  257 (398)
T ss_dssp             CCCCCTTC---C-CEEEEECTTTTTTSCCCGG--GCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHHHTTCCCCGGG
T ss_pred             chHHhhhh---cCCeEEEEeccccCCcccCcc--cCcEEEEecCcccCCCCceEEEEECHHHHHHhhcccccCCCCCcEE
Confidence            99988876   899999999999888776654  3899999999999877 59999999998876632          22


Q ss_pred             cCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          295 GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG-MQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       295 ~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g-~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      .++.....       +   ...+..+|++..+++++..+++.+.+.| ++.+.++..++++++.+.|++++|+
T Consensus       258 ~~~~~~~~-------~---~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~  320 (398)
T 2fyf_A          258 SLPIAVEN-------S---LKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYT  320 (398)
T ss_dssp             CHHHHHHH-------H---TTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHSTTE
T ss_pred             ehHHHhhh-------c---ccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            11110000       0   0113346899999999999999888877 9999999999999999999987664

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.93  E-value=6.5e-25  Score=213.60  Aligned_cols=282  Identities=14%  Similarity=0.054  Sum_probs=195.0

Q ss_pred             EeccCCCCCCcH-HHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCC--------CcEEEeCCHHH
Q 017640           70 YLDNAATSQKPI-AVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDS--------GEIVFTKNATE  140 (368)
Q Consensus        70 ~l~~~~~~~~~~-~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~--------~~v~~t~g~t~  140 (368)
                      |+++-..+..++ .+.+.+..++     +++...+..+....+..+++++++++++|.+..        ..+++|+|+|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~-----n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTe  150 (486)
T 1js3_A           76 FFAYFPTASSYPAMLADMLCGAI-----GCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASE  150 (486)
T ss_dssp             BCSSSCCCCCHHHHHHHHHHHHH-----CCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHH
T ss_pred             ceEeCCCCCCHHHHHHHHHHHHh-----CcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHH
Confidence            666655444443 4555555554     233334445566778888899999999999742        36899999999


Q ss_pred             HHHHHHHHccCCCCC-----CC---------C-EEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhc
Q 017640          141 AINLVAYSWGLSNLK-----SG---------D-EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEML  205 (368)
Q Consensus       141 a~~~~~~~~~~~~~~-----~g---------d-~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l  205 (368)
                      |+.+++.+++...++     .|         + .|+++++.|++    +...++..|++++.|++++++.+|+++|+++|
T Consensus       151 A~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s----~~~~~~~~G~~v~~v~~d~~~~~d~~~L~~~i  226 (486)
T 1js3_A          151 ATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSS----VERAGLIGGVKLKAIPSDGKFAMRASALQEAL  226 (486)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHH----HHHHHHHHTCEEEEECCCTTSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcHH----HHHHHHhCCCceEEeecCCCCCCCHHHHHHHH
Confidence            999998775210011     03         2 37889999988    44556667999999999888999999999999


Q ss_pred             ccCc------eEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccc-cCCC-----CCccEEEecCcCcCC
Q 017640          206 SRKT------KLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVV-DVQG-----LDADFLVASSHKMCG  273 (368)
Q Consensus       206 ~~~~------~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~-~~~~-----~~~d~~~~s~~K~~g  273 (368)
                      ++++      .+|++++++|+||.+.|+++|+++|++||+++++|++|+.+.... +...     .+.|++++|+||+++
T Consensus       227 ~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~  306 (486)
T 1js3_A          227 ERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLL  306 (486)
T ss_dssp             HHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSS
T ss_pred             HHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcC
Confidence            8765      389999999999999999999999999999999999999765432 1211     258999999999665


Q ss_pred             -CCcceEEEEcccc--cccCC---CcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Q 017640          274 -PTGIGFLFGKSDL--LSAMP---PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHA  347 (368)
Q Consensus       274 -~~G~G~l~~~~~l--i~~l~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~  347 (368)
                       |.|+|+++++++.  .+.+.   ++..+.+.......+...     ...+.+.+.  ..+++..+++.+...|++.+.+
T Consensus       307 ~p~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~-----~~~~~~rr~--~~~~~~~al~~~g~~g~~~~~~  379 (486)
T 1js3_A          307 VNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRH-----WQLPLGRRF--RSLKMWFVFRMYGVKGLQAYIR  379 (486)
T ss_dssp             CCSSCEEEEESCHHHHHGGGC------------CCSCCCGGG-----SSSCSCCCC--THHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccc-----cCCCCCCch--hHHHHHHHHHHHhHHHHHHHHH
Confidence             6789999998752  34442   222221110000000000     011111111  2456667777776678999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCC
Q 017640          348 YEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       348 ~~~~l~~~l~~~l~~~~g~t  367 (368)
                      +..++++++.+.|.+++|++
T Consensus       380 ~~~~~a~~l~~~L~~~~~~~  399 (486)
T 1js3_A          380 KHVQLSHEFEAFVLQDPRFE  399 (486)
T ss_dssp             HHHHHHHHHHHHHHHCTTEE
T ss_pred             HHHHHHHHHHHHHhcCCCeE
Confidence            99999999999999887754

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.93  E-value=5.9e-26  Score=215.40  Aligned_cols=266  Identities=16%  Similarity=0.128  Sum_probs=192.7

Q ss_pred             EeccCCCCCCcHHHHHHHHHHHHHhh--ccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHH
Q 017640           70 YLDNAATSQKPIAVLKALQNYYEAYN--SNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAY  147 (368)
Q Consensus        70 ~l~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~  147 (368)
                      +++.++.++.++.+.+++.+.+....  .++....+.......+..+.+|+++++++|.++  ..++++++++++..++.
T Consensus        26 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~--~~i~~~sGt~a~~~a~~  103 (405)
T 2vi8_A           26 IELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEH--ANVQPHSGAQANMAVYF  103 (405)
T ss_dssp             EECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHHHHHH
T ss_pred             eeeccCcccCCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCc--eEEEecCcHHHHHHHHH
Confidence            45555556679999999988874211  222111111112334555568899999999873  44444455999999999


Q ss_pred             HccCCCCCCCCEEEEcCCCCcccHHHHH--HHHHHcCCEEEEEeCC-CCCCCCHHHHHHhccc-CceEEEEccccccccc
Q 017640          148 SWGLSNLKSGDEVILTVAEHHSAIVPWQ--LVAQKTGANLKFLNLN-DDESPDLDKLKEMLSR-KTKLVVIHHISNMLAS  223 (368)
Q Consensus       148 ~~~~~~~~~gd~vl~~~~~~~s~~~~~~--~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~  223 (368)
                      ++    +++||+|++++++|++....+.  ... ..+.+++.++++ .++.+|+++|++++++ ++++|+++ ++| .|.
T Consensus       104 ~~----~~~gd~Vl~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~-~~~-~~~  176 (405)
T 2vi8_A          104 TV----LEHGDTVLGMNLSHGGHLTHGSPVNFS-GVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAA-AAA-YPR  176 (405)
T ss_dssp             HH----CCTTCEEEEECGGGTCCTTTTCTTSHH-HHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEEC-CSS-CCS
T ss_pred             Hh----cCCCCEEEEecccccchhcccchhhhc-cceeEEEecccccccCCcCHHHHHHHHHhcCCeEEEEe-CCC-CCc
Confidence            98    7899999999999988643111  011 113478888875 5688999999999986 88888874 333 367


Q ss_pred             ccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCC---CccEEEecCcCcCC-CCcceEEEEcccccccCCCcccCCcc
Q 017640          224 ILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGL---DADFLVASSHKMCG-PTGIGFLFGKSDLLSAMPPFLGGGEM  299 (368)
Q Consensus       224 ~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~---~~d~~~~s~~K~~g-~~G~G~l~~~~~li~~l~~~~~g~~~  299 (368)
                      ..++++|.++|++||+++|+|++|+.+....+....   .+|++++|+||+++ +.| |++++++++++.+.+...    
T Consensus       177 ~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~~~~~~~~~l~~~~~----  251 (405)
T 2vi8_A          177 IIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRG-GMILCQEQFAKQIDKAIF----  251 (405)
T ss_dssp             CCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSC-EEEEECHHHHHHHHHHHT----
T ss_pred             cCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCCCCCC-eEEEEcHHHHHHHHhhhc----
Confidence            778999999999999999999999965432222211   58899999999876 888 999999888776654321    


Q ss_pred             eeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          300 ISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                                      .+..++++..+++++.++++.+...+++.+.++..++.+++.+.|.++ |+
T Consensus       252 ----------------~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~  301 (405)
T 2vi8_A          252 ----------------PGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE-GF  301 (405)
T ss_dssp             ----------------TTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             ----------------ccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CC
Confidence                            122357788888888889988776578899999999999999999876 54

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.93  E-value=3.8e-25  Score=211.84  Aligned_cols=176  Identities=18%  Similarity=0.251  Sum_probs=149.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCC
Q 017640          104 FLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGA  183 (368)
Q Consensus       104 ~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~  183 (368)
                      .++....+..+++++++++++|.+  +.+++++| ++|+..++.++    +++||+|+++++.|++++..+...++..|+
T Consensus       107 ~y~r~~~~~~~~l~~~lA~l~g~~--~~v~~~sG-~~Ai~~al~~l----~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~  179 (445)
T 1qgn_A          107 EYGRYGNPTTVVLEEKISALEGAE--STLLMASG-MCASTVMLLAL----VPAGGHIVTTTDCYRKTRIFIETILPKMGI  179 (445)
T ss_dssp             CBGGGCCHHHHHHHHHHHHHHTCS--EEEEESCH-HHHHHHHHHHH----SCSSCEEEEETTSCHHHHHHHHHTGGGGTC
T ss_pred             cccCCCChHHHHHHHHHHHHhCCC--cEEEeCCH-HHHHHHHHHHH----hCCCCEEEEcCCCchhHHHHHHHHHHHcCC
Confidence            334444567789999999999986  25555555 59999999988    789999999999999977666656677899


Q ss_pred             EEEEEeCCCCCCCCHHHHHHhcccCc-eEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCcc
Q 017640          184 NLKFLNLNDDESPDLDKLKEMLSRKT-KLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDAD  262 (368)
Q Consensus       184 ~v~~v~~~~~~~~d~~~l~~~l~~~~-~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d  262 (368)
                      ++++++.+     |+++|++++++++ ++|++++++||||.+.|+++|.++|++||+++++|++|+.+... .....++|
T Consensus       180 ~v~~v~~~-----d~~~l~~ai~~~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~-~~~~~g~D  253 (445)
T 1qgn_A          180 TATVIDPA-----DVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQ-KALALGAD  253 (445)
T ss_dssp             EEEEECSS-----CHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC-CTTTTTCS
T ss_pred             EEEEeCCC-----CHHHHHHHhccCCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccC-CccccCCE
Confidence            99999876     8999999999999 99999999999999999999999999999999999999977542 23346899


Q ss_pred             EEEecCcCcCCCCc---ceEEEEcccccccCCC
Q 017640          263 FLVASSHKMCGPTG---IGFLFGKSDLLSAMPP  292 (368)
Q Consensus       263 ~~~~s~~K~~g~~G---~G~l~~~~~li~~l~~  292 (368)
                      +++.|+||++|+.|   +|++++++++++.+.+
T Consensus       254 iv~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~  286 (445)
T 1qgn_A          254 LVLHSATKFLGGHNDVLAGCISGPLKLVSEIRN  286 (445)
T ss_dssp             EEEECTTTTTTCSSSCCCEEEEECHHHHHHHHH
T ss_pred             EEEECCcccccccccceEEEEEECHHHHHHHHH
Confidence            99999999999887   8999999988776653

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.93  E-value=9.4e-25  Score=201.72  Aligned_cols=168  Identities=18%  Similarity=0.244  Sum_probs=142.7

Q ss_pred             HHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCC
Q 017640          115 LARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDE  194 (368)
Q Consensus       115 ~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~  194 (368)
                      ++++.+++++|.+  +.+++++ +++|+..++.++    +++||+|++++++|++....+...++..|++++.++..   
T Consensus         2 ~l~~~la~~~g~~--~~i~~~s-G~~a~~~~~~~~----~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---   71 (331)
T 1pff_A            2 ALEGKIAKLEHAE--ACAATAS-GMGAIAASVWTF----LKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMA---   71 (331)
T ss_dssp             HHHHHHHHHHTCS--EEEEESS-HHHHHHHHHHHH----CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT---
T ss_pred             hHHHHHHHHhCCC--eEEEeCC-hHHHHHHHHHHh----cCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCCC---
Confidence            6899999999986  2555544 589999999988    78999999999999998777666566789999999873   


Q ss_pred             CCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHh-cCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCC
Q 017640          195 SPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHD-VGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCG  273 (368)
Q Consensus       195 ~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~-~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g  273 (368)
                        |++++++++++++++|++++++||||.++|+++|.++|++ ||+++|+|++|+.+....+. ..+.|++++|+||++|
T Consensus        72 --d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~~~-~~~~d~~~~s~~K~~~  148 (331)
T 1pff_A           72 --VPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPL-DLGVDIVVHSATKYIN  148 (331)
T ss_dssp             --STTHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGG-GGTCSEEEEETTTTTS
T ss_pred             --CHHHHHHhhcCCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCChh-hcCCcEEEEECccccC
Confidence              8899999999999999999999999999999999999999 99999999999976643333 4579999999999877


Q ss_pred             CCc---ceEEEEcc-cccccCCCccc
Q 017640          274 PTG---IGFLFGKS-DLLSAMPPFLG  295 (368)
Q Consensus       274 ~~G---~G~l~~~~-~li~~l~~~~~  295 (368)
                      .+|   +|++++++ ++++.+++...
T Consensus       149 ~~~~r~~G~~~~~~~~~~~~l~~~~~  174 (331)
T 1pff_A          149 GHTDVVAGLVCSRADIIAKVKSQGIK  174 (331)
T ss_dssp             SSSSCCCEEEEECHHHHHHHHHTCCC
T ss_pred             CCCCceEEEEEeCcHHHHHHHHHHHH
Confidence            544   78999998 88877766544

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.93  E-value=4.8e-25  Score=208.70  Aligned_cols=170  Identities=22%  Similarity=0.227  Sum_probs=148.5

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEE
Q 017640          109 ATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL  188 (368)
Q Consensus       109 ~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v  188 (368)
                      ..+..+++++.+++++|.+   ++++++|+++|+..++.++    +++||+|++.+++|+++...+....+..|.+++++
T Consensus        64 ~~~~~~~l~~~la~~~g~~---~~~~~~sGt~A~~~al~~~----~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v  136 (392)
T 3qhx_A           64 GNPTRTALEAALAAVEDAA---FGRAFSSGMAAADCALRAM----LRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPV  136 (392)
T ss_dssp             CCHHHHHHHHHHHHHTTCS---EEEEESSHHHHHHHHHHHH----CCTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEE
T ss_pred             CChHHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHH----hCCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEe
Confidence            3456778999999999986   6889999999999999988    88999999999999998877766667889999999


Q ss_pred             eCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecC
Q 017640          189 NLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASS  268 (368)
Q Consensus       189 ~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~  268 (368)
                      +.+     |+++|++++++++++|++++++||||.+.|+++|.++|++||+++|+|++|+.+.. .+....++|+++.|+
T Consensus       137 ~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~-~~~~~~~~di~~~S~  210 (392)
T 3qhx_A          137 ALA-----DLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPAL-QQPLSLGADVVLHST  210 (392)
T ss_dssp             CTT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTT-CCGGGGTCSEEEEET
T ss_pred             CCC-----CHHHHHHhhCCCCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCccccc-CChHHhCCcEEEEcC
Confidence            986     89999999999999999999999999999999999999999999999999986643 233356799999999


Q ss_pred             cCcCCCCc---ceEEEEcc-cccccCC
Q 017640          269 HKMCGPTG---IGFLFGKS-DLLSAMP  291 (368)
Q Consensus       269 ~K~~g~~G---~G~l~~~~-~li~~l~  291 (368)
                      ||.+|++|   +|+++.++ ++++.++
T Consensus       211 sK~lg~~g~~~~G~v~~~~~~~~~~l~  237 (392)
T 3qhx_A          211 TKYIGGHSDVVGGALVTNDEELDQSFA  237 (392)
T ss_dssp             TTTTTCSSCCCCEEEEESCHHHHHHHH
T ss_pred             ccccCCCCCceEEEEEECcHHHHHHHH
Confidence            99998876   89999984 6665554

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.93  E-value=3.5e-25  Score=206.23  Aligned_cols=246  Identities=13%  Similarity=0.137  Sum_probs=183.2

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL  144 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~  144 (368)
                      +.++.|..+.+. ++++.+.+++.+.+.....++...           ..++|+++++++|.+++ +|++|+|+++++.+
T Consensus        15 ~~~id~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~-----------~~~lr~~la~~~~~~~~-~i~~t~g~~~al~~   82 (350)
T 3fkd_A           15 SEIVNFSTTVWTDGDKDHLEKHLVENLNCIRHYPEPD-----------AGTLRQMLAKRNSVDNN-AILVTNGPTAAFYQ   82 (350)
T ss_dssp             -CCEECSCCSCCCSCCHHHHHHHHHTGGGGGSCCCTT-----------CHHHHHHHHHHTTCCGG-GEEEESHHHHHHHH
T ss_pred             ccEEEccCCCCCCCCCHHHHHHHHHhHhHHhcCCCCc-----------HHHHHHHHHHHhCcCHH-HEEEcCCHHHHHHH
Confidence            567888888655 678899999988775444333211           13799999999998765 99999999999999


Q ss_pred             HHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeC-CCCCCCCHHHHHHhcccCceEEEEccccccccc
Q 017640          145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL-NDDESPDLDKLKEMLSRKTKLVVIHHISNMLAS  223 (368)
Q Consensus       145 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~-~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~  223 (368)
                      ++.++    .  ||+|++.+|+|++.    ...++..|++++.++. ++++.+++        +++++|++++++||||.
T Consensus        83 ~~~~l----~--gd~Vi~~~p~~~~~----~~~~~~~g~~~~~v~~~~~~~~~~~--------~~~~~v~i~~p~nptG~  144 (350)
T 3fkd_A           83 IAQAF----R--GSRSLIAIPSFAEY----EDACRMYEHEVCFYPSNEDIGEADF--------SNMDFCWLCNPNNPDGR  144 (350)
T ss_dssp             HHHHT----T--TCEEEEEESCCHHH----HHHHHHTTCEEEEEETTSCGGGSCC--------TTCSEEEEESSCTTTCC
T ss_pred             HHHHH----C--CCEEEEeCCCcHHH----HHHHHHcCCeEEEEecCCccccCcc--------CCCCEEEEeCCCCCcCC
Confidence            99987    4  99999999988874    4455667999999998 65343443        57899999999999999


Q ss_pred             ccCHHHHHHHHHhcC-CEEEEecCCcCCcc-----cccCCCCCccEEEecCcCcCCCCc--ceEEEEcccccccCCCccc
Q 017640          224 ILPIEEIVHWSHDVG-AKVLVDACQSVPHM-----VVDVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLG  295 (368)
Q Consensus       224 ~~~l~~i~~l~~~~g-~~li~D~a~~~~~~-----~~~~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~~~~~  295 (368)
                      ++|+++|.++++.++ .++|+|++|+....     ....+..+.+++++|+||.+|++|  +|++++++++++.+.....
T Consensus       145 ~~~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~  224 (350)
T 3fkd_A          145 LLQRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVANKDFMKRVAAFST  224 (350)
T ss_dssp             CCCHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEEECCHHHHHHHHTTCC
T ss_pred             CCCHHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccCcchheEeEEeCHHHHHHHHHhCC
Confidence            999999999998876 79999999984322     112334467799999999998666  8999999888877664431


Q ss_pred             CCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          296 GGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       296 g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                                             ..+++.....++..+++..... .+.++++. ++.+++.+.|.+++|+
T Consensus       225 -----------------------~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~-~~~~~l~~~L~~~~~~  270 (350)
T 3fkd_A          225 -----------------------PWAVNALAIEAAKFILIHPAQF-TLPIRKWQ-RNTVDFITALNRLDGV  270 (350)
T ss_dssp             -----------------------TTCSCHHHHHHHHHHHHCTTTT-CCCHHHHH-HHHHHHHHHHHHSTTE
T ss_pred             -----------------------CCCCCHHHHHHHHHHHhCHHHH-HHHHHHHH-HHHHHHHHHHhcCCCc
Confidence                                   1256666666666666533211 33444444 7888888888877664

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.93  E-value=3.2e-25  Score=212.46  Aligned_cols=263  Identities=13%  Similarity=0.131  Sum_probs=183.4

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----CCCCCCcEEEeCCHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NASDSGEIVFTKNATE  140 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~~~~~v~~t~g~t~  140 (368)
                      +++++|+.+.+. +.++.+.+++.+.+..+........+    .......++++++++++    +.++ ++|++|+|+++
T Consensus        56 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y----~~~~g~~~l~~~ia~~~~~~~~~~~-~~i~~t~G~~~  130 (432)
T 3ei9_A           56 AQVISLGIGDTTEPIPEVITSAMAKKAHELSTIEGYSGY----GAEQGAKPLRAAIAKTFYGGLGIGD-DDVFVSDGAKC  130 (432)
T ss_dssp             CCCEECSSCCCCSCCCHHHHHHHHHHHHHTTSTTTCCCC----CCTTCCHHHHHHHHHHHHTTTTCCG-GGEEEESCHHH
T ss_pred             CCeEEccCCCCCCCCCHHHHHHHHHHHhcccccCCccCC----CCCCCCHHHHHHHHHHHHccCCCCc-ceEEECCChHH
Confidence            578999999877 78999999999998864321111111    11122346788888876    6655 49999999999


Q ss_pred             HHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcC---------CEEEEEeCCCC--CCCCHHHHHHhcccCc
Q 017640          141 AINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTG---------ANLKFLNLNDD--ESPDLDKLKEMLSRKT  209 (368)
Q Consensus       141 a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g---------~~v~~v~~~~~--~~~d~~~l~~~l~~~~  209 (368)
                      ++..+ ..+    +++||.|++.+|+|++....+... ...+         .+++.++++++  ...|++.     .+++
T Consensus       131 al~~l-~~l----~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~  199 (432)
T 3ei9_A          131 DISRL-QVM----FGSNVTIAVQDPSYPAYVDSSVIM-GQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST-----VGRT  199 (432)
T ss_dssp             HHHHH-HHH----HCTTCCEEEEESCCTHHHHHHHHH-TCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-----CCCC
T ss_pred             HHHHH-HHH----cCCCCEEEEeCCCCHHHHHHHHHc-CCcccccccccccCceEEeccCcccCCcCChhh-----CCCC
Confidence            99975 556    689999999999999866544332 1111         36788888743  3344332     3578


Q ss_pred             eEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCc---cccc---CC-CCCccEEEecCcCcCCCCc--c
Q 017640          210 KLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH---MVVD---VQ-GLDADFLVASSHKMCGPTG--I  277 (368)
Q Consensus       210 ~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~---~~~~---~~-~~~~d~~~~s~~K~~g~~G--~  277 (368)
                      ++|++++++||||.++|   +++|+++|++||+++|+|++|+...   .+..   +. ..+.+++++|+||.||++|  +
T Consensus       200 ~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~  279 (432)
T 3ei9_A          200 DIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGVRL  279 (432)
T ss_dssp             SEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTTTCC
T ss_pred             CEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcccce
Confidence            99999999999999998   6677777999999999999998321   1111   11 1246799999999999888  8


Q ss_pred             eEEEEccccc--------ccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH
Q 017640          278 GFLFGKSDLL--------SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYE  349 (368)
Q Consensus       278 G~l~~~~~li--------~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~  349 (368)
                      |+++++++++        +.+....                     ....++++..++.++.+++.......++.++++.
T Consensus       280 G~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  338 (432)
T 3ei9_A          280 GWTVIPKKLLYSDGFPVAKDFNRII---------------------CTCFNGASNISQAGALACLTPEGLEAMHKVIGFY  338 (432)
T ss_dssp             EEEECCTTCBCTTSCBHHHHHHHHH---------------------HHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHH
T ss_pred             EEEEEChHHhhcchHHHHHHHHHHh---------------------ccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            9999998873        2222111                     1112356777777666666422112367888899


Q ss_pred             HHHHHHHHHHHHhhcCC
Q 017640          350 VKWIICSIIVIQERHNT  366 (368)
Q Consensus       350 ~~l~~~l~~~l~~~~g~  366 (368)
                      .++.+++.+.|.+. |+
T Consensus       339 ~~~~~~l~~~L~~~-g~  354 (432)
T 3ei9_A          339 KENTNIIIDTFTSL-GY  354 (432)
T ss_dssp             HHHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHHHHHC-Cc
Confidence            99999999999876 54

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.93  E-value=4.8e-25  Score=209.15  Aligned_cols=251  Identities=18%  Similarity=0.177  Sum_probs=174.0

Q ss_pred             EEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHH
Q 017640           69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS  148 (368)
Q Consensus        69 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~  148 (368)
                      ...++.+.....+.+.+++..+     .++. +.+..+....+..+++++.+++++|.+   +.++++|+++|+..++.+
T Consensus        29 ~~p~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~r~~~~~~~~l~~~la~~~g~~---~~i~~~sG~~a~~~~l~~   99 (398)
T 1gc0_A           29 VPPVYQTATFTFPTVEYGAACF-----AGEQ-AGHFYSRISNPTLNLLEARMASLEGGE---AGLALASGMGAITSTLWT   99 (398)
T ss_dssp             SCCBCCCSCBCCC---------------------------CCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHH
T ss_pred             CCCccCCCccccCCHHHHHHhh-----cCCc-CCCcccCCCChHHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHH
Confidence            3445555555555555554321     1221 122233334567789999999999986   455666668999999999


Q ss_pred             ccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHH
Q 017640          149 WGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIE  228 (368)
Q Consensus       149 ~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~  228 (368)
                      +    +++||+|++++++|+++...+...++..|.+++.++.+     |++++++++++++++|++++++||||.+.|++
T Consensus       100 ~----~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~  170 (398)
T 1gc0_A          100 L----LRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMA-----DLQALEAAMTPATRVIYFESPANPNMHMADIA  170 (398)
T ss_dssp             H----CCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHH
T ss_pred             H----hcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCCCCeEEEEECCCCCCcccccHH
Confidence            8    78999999999999998877766667789999999875     89999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCc---ceEEEEcccccc-cCCCcccCCcceeecc
Q 017640          229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTG---IGFLFGKSDLLS-AMPPFLGGGEMISDVF  304 (368)
Q Consensus       229 ~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G---~G~l~~~~~li~-~l~~~~~g~~~~~~~~  304 (368)
                      +|.++|++||+++|+|++|+.+.....+ ..+.|+++.|+||++|.+|   +|+++++++.++ .+++...+        
T Consensus       171 ~i~~l~~~~~~~li~D~~~~~~~~~~~~-~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~--------  241 (398)
T 1gc0_A          171 GVAKIARKHGATVVVDNTYCTPYLQRPL-ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKD--------  241 (398)
T ss_dssp             HHHHHHGGGTCEEEEECTTTHHHHCCGG-GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHH--------
T ss_pred             HHHHHHHHcCCEEEEECCCcccccCCch-hhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhc--------
Confidence            9999999999999999999966543222 3579999999999888554   599999987665 34433221        


Q ss_pred             cCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          305 LDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       305 ~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                                  +..++.+....+++..+++.+     ....++..+.+..+.+.|.++
T Consensus       242 ------------~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~l~~~L~~~  283 (398)
T 1gc0_A          242 ------------MTGAVLSPHDAALLMRGIKTL-----NLRMDRHCANAQVLAEFLARQ  283 (398)
T ss_dssp             ------------HTCCCCCHHHHHHHHHHHTTH-----HHHHHHHHHHHHHHHHHHHTC
T ss_pred             ------------cCCCCCCHHHHHHHHhccchH-----HHHHHHHHHHHHHHHHHHhcC
Confidence                        012356665555555555433     333445555566666666553

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.93  E-value=6.8e-25  Score=208.12  Aligned_cols=265  Identities=14%  Similarity=0.081  Sum_probs=183.3

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHH--cC-CCCCCcEEEeCCHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAF--IN-ASDSGEIVFTKNATEA  141 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~--~~-~~~~~~v~~t~g~t~a  141 (368)
                      +++++|+.+..+ ++++.+.+++.+.+...........+.    ......++|++++++  .| .++ ++|++|+|++++
T Consensus        33 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~----~~~g~~~lr~~la~~l~~g~~~~-~~v~~~~G~~~a  107 (400)
T 3asa_A           33 HTVINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYG----PDFGLPALRQKLSEDFYRGFVDA-KEIFISDGAKVD  107 (400)
T ss_dssp             SCCEECSSCCCCCCCCHHHHHHHHHHHHHHTSSSCCCCCC----CTTCCHHHHHHHHHTTSTTSSCG-GGEEEESCHHHH
T ss_pred             CceEeccCCCCCCCCCHHHHHHHHHHHhcccccccccCCC----CCCCCHHHHHHHHHHHHcCCCCH-HHEEEccChHHH
Confidence            678999999876 678899999999887642211101111    112345799999999  46 444 499999999999


Q ss_pred             HHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCE-EEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccc
Q 017640          142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGAN-LKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNM  220 (368)
Q Consensus       142 ~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~-v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~  220 (368)
                      +..++. +    +++||+|++.+|+|++..    ..++..|.+ ++.++.++++.++.+ +++ + +++++|++++++||
T Consensus       108 l~~~~~-~----~~~gd~Vl~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~-l~~-~-~~~~~v~l~~p~np  175 (400)
T 3asa_A          108 LFRLLS-F----FGPNQTVAIQDPSYPAYL----DIARLTGAKEIIALPCLQENAFFPE-FPE-D-THIDILCLCSPNNP  175 (400)
T ss_dssp             HHHHHH-H----HCSSCEEEEEESCCHHHH----HHHHHTTCSEEEEEECCGGGTTCCC-CCT-T-CCCSEEEEESSCTT
T ss_pred             HHHHHH-H----cCCCCEEEECCCCcHHHH----HHHHHcCCcceEecccchhcCcccC-hhh-c-cCccEEEEeCCCCC
Confidence            999764 3    468999999999888744    345566888 999998754222211 222 1 57899999999999


Q ss_pred             cccccC---HHHHHHHHHhcCCEEEEecCCc-C---CcccccCCCC----CccEEEecCcCcCCCCc--ceEEEEccccc
Q 017640          221 LASILP---IEEIVHWSHDVGAKVLVDACQS-V---PHMVVDVQGL----DADFLVASSHKMCGPTG--IGFLFGKSDLL  287 (368)
Q Consensus       221 tG~~~~---l~~i~~l~~~~g~~li~D~a~~-~---~~~~~~~~~~----~~d~~~~s~~K~~g~~G--~G~l~~~~~li  287 (368)
                      ||.++|   +++|.++|+++|+++|+|++|+ +   +..+.++...    +.+++++|+||.+|++|  +|++++++++.
T Consensus       176 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~~~~~  255 (400)
T 3asa_A          176 TGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQELT  255 (400)
T ss_dssp             TCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEEEECCTTCB
T ss_pred             CCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcchheeEEeeChhhc
Confidence            999999   6678899999999999999998 3   2212223222    34688999999999888  89999998874


Q ss_pred             ccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          288 SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       288 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +...      ........       .......++.+.....++..+++..   .++.++++.+++.+++.+.|.+.
T Consensus       256 ~~~~------~~~~~~~~-------~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~l~~~L~~~  315 (400)
T 3asa_A          256 YADG------HFVIQDWE-------RFLSTTFNGASIPAQEAGVAGLSIL---PQLEAIHYYRENSDLLRKALLAT  315 (400)
T ss_dssp             CTTS------CBHHHHHH-------HHHHHHCCCCCHHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHHHHHHHT
T ss_pred             cchh------hhHHHHHH-------HHhccCccCCChHHHHHHHHHhCcH---HHHHHHHHHHHHHHHHHHHHHHC
Confidence            2211      00000000       0000112356777777776666532   46788889999999999999875

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.93  E-value=5.3e-25  Score=206.68  Aligned_cols=244  Identities=16%  Similarity=0.161  Sum_probs=181.2

Q ss_pred             HHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEE
Q 017640           83 VLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVIL  162 (368)
Q Consensus        83 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~  162 (368)
                      +.+++.+.+....-       .    ..+...++|+.++++++.+   ++++++|+|+|+..++.++   .+++||+|++
T Consensus        21 ~~~~~~~~~~~~~~-------~----~~~~~~~l~~~la~~~~~~---~~~~~~~gt~a~~~~~~~~---~~~~gd~v~~   83 (374)
T 3uwc_A           21 YLNDLREFIKTADF-------T----LGAELEKFEKRFAALHNAP---HAIGVGTGTDALAMSFKML---NIGAGDEVIT   83 (374)
T ss_dssp             HHHHHHHHHHHTCC-------S----SCHHHHHHHHHHHHHTTCS---EEEEESCHHHHHHHHHHHT---TCCTTCEEEE
T ss_pred             HHHHHHHHHHcCCc-------c----cChhHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHc---CCCCCCEEEE
Confidence            88888777664211       1    1345668999999999986   7899999999999999987   3789999999


Q ss_pred             cCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEE
Q 017640          163 TVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVL  242 (368)
Q Consensus       163 ~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li  242 (368)
                      ++++|++...    .++..|++++.++.++++.+|++++++++++++++|+   ++||||.+.|+++|.++|++||+++|
T Consensus        84 ~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li  156 (374)
T 3uwc_A           84 CANTFIASVG----AIVQAGATPVLVDSENGYVIDPEKIEAAITDKTKAIM---PVHYTGNIADMPALAKIAKKHNLHIV  156 (374)
T ss_dssp             ESSSCHHHHH----HHHHTTCEEEEECBCTTSSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEE
T ss_pred             CCCccHHHHH----HHHHcCCEEEEEecCCCCCcCHHHHHHhCCCCceEEE---EeCCcCCcCCHHHHHHHHHHcCCEEE
Confidence            9999998654    3456799999999987888999999999998888887   78899999999999999999999999


Q ss_pred             EecCCcCCcccccCCCCC--ccEEEecCc--CcCCCCc-ceEEEEcc-cccccCCCcccCCcceeecccCCCCCCCCCCC
Q 017640          243 VDACQSVPHMVVDVQGLD--ADFLVASSH--KMCGPTG-IGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSR  316 (368)
Q Consensus       243 ~D~a~~~~~~~~~~~~~~--~d~~~~s~~--K~~g~~G-~G~l~~~~-~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~  316 (368)
                      +|++|+.+.. ++....+  .|+++.|+|  |++|+.| +|+++.++ ++.+.+++...++.....             .
T Consensus       157 ~D~~~~~g~~-~~~~~~~~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~-------------~  222 (374)
T 3uwc_A          157 EDACQTILGR-INDKFVGSWGQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYRNHGLINRD-------------V  222 (374)
T ss_dssp             EECTTCTTCE-ETTEETTSSSSEEEEECSSSSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEETT-------------E
T ss_pred             EeCCCccCce-eCCeeccccccEEEEeCCCCCcCCccceeEEEEeCCHHHHHHHHHHHhcCccccC-------------c
Confidence            9999998765 3333333  699999977  9888855 78888765 455555544333222100             0


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcC
Q 017640          317 FEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHN  365 (368)
Q Consensus       317 ~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g  365 (368)
                      ....+.+. .+..+.+++......+++.+.++..++.+++.+.|.++.+
T Consensus       223 ~~~~~~~~-~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  270 (374)
T 3uwc_A          223 CVEYGINC-RMDTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVDLSE  270 (374)
T ss_dssp             ESSCCCBC-BCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGGTT
T ss_pred             cccccccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            00001111 1223444444445556788889999999999999988765

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.93  E-value=4.9e-26  Score=218.01  Aligned_cols=258  Identities=14%  Similarity=0.097  Sum_probs=191.0

Q ss_pred             CCeEEeccCCC-C-CCcHHH--HHHHHHHHHH--hhccCCCCcchhhHHHHHHHHHHHHHHHHHc-----CCCCCCc---
Q 017640           66 KKLVYLDNAAT-S-QKPIAV--LKALQNYYEA--YNSNVHRGIHFLSAKATDEYELARKKVAAFI-----NASDSGE---  131 (368)
Q Consensus        66 ~~~i~l~~~~~-~-~~~~~v--~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~-----~~~~~~~---  131 (368)
                      ++++.|..+.+ . ..++.+  .+++.+.+..  ...++.          .....++|+.+++++     +.+++ +   
T Consensus        47 ~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~----------~~g~~~lr~~ia~~~~~~~~~~~~~-~~~~  115 (430)
T 2x5f_A           47 STTYNATIGMATNKDGKMFASSLDAMFNDLTPDEIFPYAP----------PQGIEELRDLWQQKMLRDNPELSID-NMSR  115 (430)
T ss_dssp             TCSEECCCSSCEETTEECCCHHHHTTBSSCCGGGTSSCCC----------TTCCHHHHHHHHHHHHHHCTTCCGG-GBCC
T ss_pred             CCcEEeeeeeccCCCCchhhHHHHHHHHhcCcccccccCC----------CCCCHHHHHHHHHHHhccCcccCCC-ccce
Confidence            45678888766 3 234444  5555444322  111111          122347888888888     77654 7   


Q ss_pred             EEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHH-cCCEEEEEeCCC-CCCCCHHHHHHhccc--
Q 017640          132 IVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK-TGANLKFLNLND-DESPDLDKLKEMLSR--  207 (368)
Q Consensus       132 v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~-~g~~v~~v~~~~-~~~~d~~~l~~~l~~--  207 (368)
                      |++|+|+++|+..++.++    +++||+|++.+|+|++..    ..++. .|++++.++.++ ++.+|+++|++++++  
T Consensus       116 i~~t~g~~~al~~~~~~l----~~~gd~Vl~~~p~y~~~~----~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~  187 (430)
T 2x5f_A          116 PIVTNALTHGLSLVGDLF----VNQDDTILLPEHNWGNYK----LVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSYN  187 (430)
T ss_dssp             CEEESHHHHHHHHHHHHH----CCTTCEEEEESSCCTHHH----HHHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHHCC
T ss_pred             EEEcCCchHHHHHHHHHH----hCCCCEEEEcCCcCccHH----HHHHHhcCCeEEEEeccCccCCcCHHHHHHHHHhcC
Confidence            999999999999999998    789999999999998843    44556 799999999875 467899999999987  


Q ss_pred             -CceEEEEcccccccccccC---HHHHHHHHHh-----cCCEEEEecCCcCCcc------cc--cCCC-CCc---cEEEe
Q 017640          208 -KTKLVVIHHISNMLASILP---IEEIVHWSHD-----VGAKVLVDACQSVPHM------VV--DVQG-LDA---DFLVA  266 (368)
Q Consensus       208 -~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~-----~g~~li~D~a~~~~~~------~~--~~~~-~~~---d~~~~  266 (368)
                       +++++++++|+||||.++|   +++|.++|++     ||+++|+|++|+....      ++  ++.. .+.   +++++
T Consensus       188 ~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  267 (430)
T 2x5f_A          188 KDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLD  267 (430)
T ss_dssp             SSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEE
T ss_pred             CCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEE
Confidence             7899999999999999999   8899999999     9999999999984321      21  2222 345   78899


Q ss_pred             cCcCcCCCCc--ceEEEE---cccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH----HH
Q 017640          267 SSHKMCGPTG--IGFLFG---KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAID----YL  337 (368)
Q Consensus       267 s~~K~~g~~G--~G~l~~---~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~----~~  337 (368)
                      |+||.+|++|  +|++++   ++++++.+.......                 .+....+++.....++..+++    +.
T Consensus       268 s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~-----------------~~~~~~~~~~~~~~a~~~~l~~~~~~~  330 (430)
T 2x5f_A          268 GATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGL-----------------IRSNISSGPLPTQSAVKHVLKNNKQFD  330 (430)
T ss_dssp             EHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHH-----------------HHTTTSSCCHHHHHHHHHHHHSCHHHH
T ss_pred             ecccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhhh-----------------hhcccCCCChHHHHHHHHHHccChHHH
Confidence            9999999778  799999   888877765432110                 011233678888888888887    33


Q ss_pred             HHhCHHHHHHHHHHHHHHHHHHHH
Q 017640          338 STIGMQKIHAYEVKWIICSIIVIQ  361 (368)
Q Consensus       338 ~~~g~~~i~~~~~~l~~~l~~~l~  361 (368)
                      +.  ++.++++..++.+++.+.|.
T Consensus       331 ~~--~~~~~~~~~~~~~~l~~~L~  352 (430)
T 2x5f_A          331 KE--IEQNIQTLKERYEVTKEVVY  352 (430)
T ss_dssp             HH--HHHHHHHHHHHHHHHHHHHT
T ss_pred             HH--HHHHHHHHHHHHHHHHHHHH
Confidence            32  56688888889999999887

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.93  E-value=1.5e-24  Score=207.39  Aligned_cols=225  Identities=13%  Similarity=0.131  Sum_probs=171.3

Q ss_pred             HHHHHHHHHHHHHHcCCCC--------CCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHc
Q 017640          110 TDEYELARKKVAAFINASD--------SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKT  181 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~--------~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~  181 (368)
                      .+..+.+.+.+++.+|.+.        +++|++|+|+++++.+++.++    +++||+|++.+|+|++.    ...++..
T Consensus        81 ~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l----~~~gd~Vlv~~p~y~~~----~~~~~~~  152 (425)
T 2r2n_A           81 PELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMI----INPGDNVLLDEPAYSGT----LQSLHPL  152 (425)
T ss_dssp             HHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHH----CCTTCEEEEESSCCHHH----HHHHGGG
T ss_pred             HHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHh----CCCCCEEEEeCCCcHHH----HHHHHHc
Confidence            3444555666666668764        248999999999999999998    88999999999988874    4456677


Q ss_pred             CCEEEEEeCCCCCCCCHHHHHHhcc------------cCceEEEE-cccccccccccCH---HHHHHHHHhcCCEEEEec
Q 017640          182 GANLKFLNLNDDESPDLDKLKEMLS------------RKTKLVVI-HHISNMLASILPI---EEIVHWSHDVGAKVLVDA  245 (368)
Q Consensus       182 g~~v~~v~~~~~~~~d~~~l~~~l~------------~~~~~v~~-~~~~n~tG~~~~l---~~i~~l~~~~g~~li~D~  245 (368)
                      |++++.++.++++ +|+++|+++++            +++++|++ ++++||||.++|.   ++|.++|++||+++|+|+
T Consensus       153 g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De  231 (425)
T 2r2n_A          153 GCNIINVASDESG-IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDD  231 (425)
T ss_dssp             TCEEEEECEETTE-ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCEEEEeCcCCCC-CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEC
Confidence            9999999987654 79999999886            35788765 7999999999995   499999999999999999


Q ss_pred             CCcC----Ccccc---cCCCCCccEEEecCcCcCCCCc--ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCC
Q 017640          246 CQSV----PHMVV---DVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSR  316 (368)
Q Consensus       246 a~~~----~~~~~---~~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~  316 (368)
                      +|+.    +....   .++..+.+++++|+||.+| +|  +||+++++++++.+......                    
T Consensus       232 ~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~GlRiG~~~~~~~l~~~l~~~~~~--------------------  290 (425)
T 2r2n_A          232 PYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-SGLRIGFLTGPKPLIERVILHIQV--------------------  290 (425)
T ss_dssp             TTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-STTCCEEEEEEHHHHHHHHHHHHT--------------------
T ss_pred             CcccccCCCCCCCCccccCCCCCEEEEccchhhcc-CccceEEEecCHHHHHHHHHHHHH--------------------
Confidence            9972    22111   2233356799999999998 77  89999999988776543221                    


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHH----hCHHHHHHHHHHHHHHHHHHHHhh-cC
Q 017640          317 FEAGTPAIGEAIGLGAAIDYLST----IGMQKIHAYEVKWIICSIIVIQER-HN  365 (368)
Q Consensus       317 ~~~gt~~~~~~~a~~~al~~~~~----~g~~~i~~~~~~l~~~l~~~l~~~-~g  365 (368)
                       ...+.+.....++..+++.+.+    ..++.++++.++..+++.+.|.+. +|
T Consensus       291 -~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  343 (425)
T 2r2n_A          291 -STLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTG  343 (425)
T ss_dssp             -TTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred             -hcCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence             1236677777777777775321    125677788888888888888874 44

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.93  E-value=7.8e-25  Score=213.63  Aligned_cols=252  Identities=14%  Similarity=0.111  Sum_probs=180.6

Q ss_pred             CcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----CCC-CCCcEEEeCCHHHHHHHHHHHccCCC
Q 017640           79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS-DSGEIVFTKNATEAINLVAYSWGLSN  153 (368)
Q Consensus        79 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~-~~~~v~~t~g~t~a~~~~~~~~~~~~  153 (368)
                      .|..++++..+.+...... ....+....    ...++|+.+++++    |.+ .+++|++|+|+++++..++.++    
T Consensus       107 ~p~~~~~~a~~~l~~~~~~-~~~~Y~~~~----G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l----  177 (500)
T 3tcm_A          107 FSADSISRAKQILAMIPGR-ATGAYSHSQ----GIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLL----  177 (500)
T ss_dssp             SCHHHHHHHHHHHTTSTTS-CSSSCCCTT----CCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHH----
T ss_pred             CCHHHHHHHHHHHHcCCCC-cCCCcCCCc----ChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHH----
Confidence            5556666666655543110 111222222    2234555555554    432 2249999999999999999998    


Q ss_pred             C-CCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC--CCCCHHHHHHhccc------CceEEEEcccccccccc
Q 017640          154 L-KSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSR------KTKLVVIHHISNMLASI  224 (368)
Q Consensus       154 ~-~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~l~~------~~~~v~~~~~~n~tG~~  224 (368)
                      + ++||+|++++|+|++.    ...++..|++++.++++++  +.+|+++|++++++      ++++|++++++||||.+
T Consensus       178 ~~~~gd~Vlv~~p~y~~~----~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~  253 (500)
T 3tcm_A          178 IRNEKDGILVPIPQYPLY----SASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQV  253 (500)
T ss_dssp             CCSTTEEEEEEESCCTHH----HHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCC
T ss_pred             cCCCCCEEEEeCCCcHhH----HHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCccc
Confidence            6 7999999999999874    4445667999999998865  58899999999976      78999999999999999


Q ss_pred             cC---HHHHHHHHHhcCCEEEEecCCcCCccc-----cc-------C---CCCCccEEEecCcCcC-CCCc--ceEEEE-
Q 017640          225 LP---IEEIVHWSHDVGAKVLVDACQSVPHMV-----VD-------V---QGLDADFLVASSHKMC-GPTG--IGFLFG-  282 (368)
Q Consensus       225 ~~---l~~i~~l~~~~g~~li~D~a~~~~~~~-----~~-------~---~~~~~d~~~~s~~K~~-g~~G--~G~l~~-  282 (368)
                      ++   +++|+++|++||+++|+|++|+.....     .+       +   ......+++.|+||.| |++|  +||+++ 
T Consensus       254 ~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~  333 (500)
T 3tcm_A          254 LAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEIT  333 (500)
T ss_dssp             CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEE
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEe
Confidence            99   667777799999999999999853221     11       1   1111246778999987 8777  899998 


Q ss_pred             --cccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-----------HHHHhCHHHHHHHH
Q 017640          283 --KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAID-----------YLSTIGMQKIHAYE  349 (368)
Q Consensus       283 --~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~-----------~~~~~g~~~i~~~~  349 (368)
                        ++++++.+.....                      ...+++..+.+++..+++           +...  .+.++++.
T Consensus       334 ~~~~~~~~~l~~~~~----------------------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~l  389 (500)
T 3tcm_A          334 GFSAPVREQIYKIAS----------------------VNLCSNITGQILASLVMNPPKASDESYASYKAE--KDGILASL  389 (500)
T ss_dssp             SCCTTHHHHHHHHHH----------------------TTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHH--HHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh----------------------cccCCCHHHHHHHHHHhcCccccchhHHHHHHH--HHHHHHHH
Confidence              7888776653321                      112677777777777774           2233  57788889


Q ss_pred             HHHHHHHHHHHHhhcCCC
Q 017640          350 VKWIICSIIVIQERHNTT  367 (368)
Q Consensus       350 ~~l~~~l~~~l~~~~g~t  367 (368)
                      +++++++.+.|.+++|++
T Consensus       390 ~~~~~~l~~~L~~~~g~~  407 (500)
T 3tcm_A          390 ARRAKALEHAFNKLEGIT  407 (500)
T ss_dssp             HHHHHHHHHHHHTSTTEE
T ss_pred             HHHHHHHHHHHhcCCCcE
Confidence            999999999999877754

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.93  E-value=4.5e-25  Score=210.14  Aligned_cols=266  Identities=12%  Similarity=0.098  Sum_probs=185.1

Q ss_pred             eEEeccCCCCCCcHHHHHHHHHHHHHhh--ccCCCCcchhh-HHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHH
Q 017640           68 LVYLDNAATSQKPIAVLKALQNYYEAYN--SNVHRGIHFLS-AKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL  144 (368)
Q Consensus        68 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~  144 (368)
                      .+.|..+. .+.++.+.+++.+.+...+  .++.. .+..+ ....+..+.+++.+++++|.++. +|++++| ++|+..
T Consensus        27 ~i~l~~~~-~~~~~~v~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~i~~~sG-t~a~~~  102 (417)
T 3n0l_A           27 GLEMIASE-NFTLPEVMEVMGSILTNKYAEGYPGK-RYYGGCEFVDEIETLAIERCKKLFNCKFA-NVQPNSG-SQANQG  102 (417)
T ss_dssp             SEECCTTC-CCCCHHHHHHHTBGGGGCCCCEETTE-ESSSCCHHHHHHHHHHHHHHHHHHTCSEE-ECCCSSH-HHHHHH
T ss_pred             Ceeeeccc-CCCCHHHHHHHhhhhhccccccCCCc-cccccchHHHHHHHHHHHHHHHHhCCCCc-ceEeccH-HHHHHH
Confidence            45665443 4568999999988774322  22221 11122 22345555688899999999753 5777666 899999


Q ss_pred             HHHHccCCCCCCCCEEEEcCCCCcccHHHHHHH-HHHcCCEEEEEeCCCCCCCCHHHHHHhcc-cCceEEEEcccccccc
Q 017640          145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLV-AQKTGANLKFLNLNDDESPDLDKLKEMLS-RKTKLVVIHHISNMLA  222 (368)
Q Consensus       145 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~-~~~~g~~v~~v~~~~~~~~d~~~l~~~l~-~~~~~v~~~~~~n~tG  222 (368)
                      ++.++    +++||+|++.+++|++........ ....+..++.++.+.++.+|+++|+++++ .++++|++++++|  |
T Consensus       103 ~~~~~----~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~--G  176 (417)
T 3n0l_A          103 VYAAL----INPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKEKPKLIVCGASAY--A  176 (417)
T ss_dssp             HHHHH----SCTTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHHHCCSEEEECCSSC--C
T ss_pred             HHHHh----cCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHhcCCeEEEECCccc--C
Confidence            99998    899999999999998765422221 11234567777777778899999999998 5899999888775  8


Q ss_pred             cccCHHHHHHHHHhcCCEEEEecCCcCCcc-----cccCCCCCccEEEecCcCcCCCCcceEEEEc-ccccccCCCcccC
Q 017640          223 SILPIEEIVHWSHDVGAKVLVDACQSVPHM-----VVDVQGLDADFLVASSHKMCGPTGIGFLFGK-SDLLSAMPPFLGG  296 (368)
Q Consensus       223 ~~~~l~~i~~l~~~~g~~li~D~a~~~~~~-----~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~-~~li~~l~~~~~g  296 (368)
                      .+.|+++|.++|++||+++|+|++|+.+..     +..+.  ..|++++|+||.++.+.+|+++++ +++++.+.+....
T Consensus       177 ~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~--~~di~~~s~sK~l~g~~~G~~~~~~~~~~~~~~~~~~~  254 (417)
T 3n0l_A          177 RVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFP--YAHVVSSTTHKTLRGPRGGIIMTNDEELAKKINSAIFP  254 (417)
T ss_dssp             SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT--TCSEEEEESSTTTCSCSCEEEEESCHHHHHHHHHHHTT
T ss_pred             ccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccc--cceEEEeeCccccCCCCeeEEEECCHHHHHHHhhhhCC
Confidence            999999999999999999999999875543     22222  479999999997643335999998 5777666543321


Q ss_pred             CcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          297 GEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      +                    ..++++...++++..++......+++.+.++..++++++.+.|.+ .|+
T Consensus       255 ~--------------------~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~  303 (417)
T 3n0l_A          255 G--------------------IQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMD-RKF  303 (417)
T ss_dssp             T--------------------TCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-TTC
T ss_pred             c--------------------ccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-CCc
Confidence            1                    134678888888888877654445678888999999999999987 343

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.93  E-value=5.5e-25  Score=209.46  Aligned_cols=167  Identities=21%  Similarity=0.268  Sum_probs=147.2

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEE
Q 017640          109 ATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL  188 (368)
Q Consensus       109 ~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v  188 (368)
                      ..+..+++++++++++|.+   ++++++|+++|+..++.++    +++||+|++.++.|++....+...++..|++++++
T Consensus        79 ~~p~~~~l~~~la~~~g~~---~~~~~~sG~~Ai~~al~~l----~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v  151 (414)
T 3ndn_A           79 GNPTVSVFEERLRLIEGAP---AAFATASGMAAVFTSLGAL----LGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFV  151 (414)
T ss_dssp             CCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHTT----CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEE
T ss_pred             CChHHHHHHHHHHHHHCCC---cEEEECCHHHHHHHHHHHH----hCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEe
Confidence            3566778999999999974   7789999999999999987    89999999999999998877777677789999999


Q ss_pred             eCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecC
Q 017640          189 NLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASS  268 (368)
Q Consensus       189 ~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~  268 (368)
                      +.+     |+++|++++++++++|++++++||||.+.|+++|.++|++||+++|+|++|+.+.... ....+.|+++.|+
T Consensus       152 ~~~-----d~~~l~~ai~~~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~~-~~~~g~div~~S~  225 (414)
T 3ndn_A          152 DGD-----DLSQWERALSVPTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQ-GFPLGVDVVVYSG  225 (414)
T ss_dssp             CTT-----CHHHHHHHTSSCCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCC-CGGGTCSEEEEET
T ss_pred             CCC-----CHHHHHHhcCCCCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccccCC-chhcCCCeEeccC
Confidence            986     8999999999999999999999999999999999999999999999999998654322 2245789999999


Q ss_pred             cCcCCCCc---ceEEEEcccccc
Q 017640          269 HKMCGPTG---IGFLFGKSDLLS  288 (368)
Q Consensus       269 ~K~~g~~G---~G~l~~~~~li~  288 (368)
                      +|++|++|   +|+++++++.+.
T Consensus       226 sK~l~~~G~~~~G~vv~~~~~~~  248 (414)
T 3ndn_A          226 TKHIDGQGRVLGGAILGDREYID  248 (414)
T ss_dssp             TTTTTCSSCCCCEEEEECHHHHT
T ss_pred             CccccCCCCceEEEEEECHHHHH
Confidence            99999877   799999887665

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.93  E-value=1.4e-25  Score=208.97  Aligned_cols=260  Identities=13%  Similarity=0.018  Sum_probs=186.0

Q ss_pred             CCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHH
Q 017640           66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV  145 (368)
Q Consensus        66 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~  145 (368)
                      +++++|+.+..+++++.+.+++.+....     +.    ..+...+..+++++++++++| . +.+|++|+|+++++..+
T Consensus         7 ~~~id~~~~~~~~~~~~v~~a~~~~~~~-----~~----~~~~~~~~~~~l~~~la~~~g-~-~~~v~~~~~gt~a~~~a   75 (356)
T 1v72_A            7 PPALGFSSDNIAGASPEVAQALVKHSSG-----QA----GPYGTDELTAQVKRKFCEIFE-R-DVEVFLVPTGTAANALC   75 (356)
T ss_dssp             CCCCBCSCGGGCCCCHHHHHHHHHTTSS-----CC----CSTTCSHHHHHHHHHHHHHHT-S-CCEEEEESCHHHHHHHH
T ss_pred             CceEeeccCCccCCCHHHHHHHHhhccC-----cc----cccccchHHHHHHHHHHHHhC-C-CCcEEEeCCccHHHHHH
Confidence            5678999887778899999998876421     11    111224566789999999999 4 33699999999999999


Q ss_pred             HHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHc--CCEEEEEeCCCCCCCCHHHHHH-hccc-------CceEEEEc
Q 017640          146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKT--GANLKFLNLNDDESPDLDKLKE-MLSR-------KTKLVVIH  215 (368)
Q Consensus       146 ~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~--g~~v~~v~~~~~~~~d~~~l~~-~l~~-------~~~~v~~~  215 (368)
                      +.++    .++||+|++.++.|++.+..  ..+...  |++++.++.+ ++.+|+++|++ ++++       ++++|+++
T Consensus        76 l~~~----~~~gd~vi~~~~~~~~~~~~--~~~~~~~~g~~~~~v~~~-~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~  148 (356)
T 1v72_A           76 LSAM----TPPWGNIYCHPASHINNDEC--GAPEFFSNGAKLMTVDGP-AAKLDIVRLRERTREKVGDVHTTQPACVSIT  148 (356)
T ss_dssp             HHTS----CCTTEEEEECTTSHHHHSST--THHHHHTTSCEEEECCCG-GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEE
T ss_pred             HHHh----cCCCCEEEEcCccchhhhhc--hHHHHHhCCcEEEEecCC-CCeEcHHHHHHHhhhcchhhccCCceEEEEE
Confidence            9987    78999999999988775432  013444  8899999875 57889999999 8875       68999999


Q ss_pred             ccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCc-----cccc-CC-CCCccEEEecCcCcCCCCcceEEEEccc
Q 017640          216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH-----MVVD-VQ-GLDADFLVASSHKMCGPTGIGFLFGKSD  285 (368)
Q Consensus       216 ~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~-----~~~~-~~-~~~~d~~~~s~~K~~g~~G~G~l~~~~~  285 (368)
                      +++| ||.++|   +++|.++|++||+++|+|++|+.+.     .+.. .. ..+.|+++.|+||+.++.|+|+++++++
T Consensus       149 ~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~g~~~G~g~~~~~~~  227 (356)
T 1v72_A          149 QATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTS  227 (356)
T ss_dssp             SSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSSCEEEEESSGG
T ss_pred             cCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccCCCcCccEEEEECHH
Confidence            9876 999776   7899999999999999999987321     1111 11 1367899999999845666779998988


Q ss_pred             ccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcC
Q 017640          286 LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHN  365 (368)
Q Consensus       286 li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g  365 (368)
                      +++.+......                      .|+.......++..+++.+.+.....+.++..++.+++.+.|.+++|
T Consensus       228 ~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g  285 (356)
T 1v72_A          228 LATEMSYRRKR----------------------AGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGG  285 (356)
T ss_dssp             GHHHHHHHHHH----------------------TTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred             HHhhHHHHhhc----------------------cCchhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            87765432110                      00111111233333455544422445677888899999999987655


Q ss_pred             C
Q 017640          366 T  366 (368)
Q Consensus       366 ~  366 (368)
                      +
T Consensus       286 ~  286 (356)
T 1v72_A          286 V  286 (356)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.93  E-value=1.5e-24  Score=203.72  Aligned_cols=246  Identities=17%  Similarity=0.168  Sum_probs=180.9

Q ss_pred             CcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCC
Q 017640           79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD  158 (368)
Q Consensus        79 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd  158 (368)
                      .++.+.+++.+.+....       +.    ..+...++|+.+++++|.+   ++++++|+|+|+..++.++   .+++||
T Consensus        15 ~~~~~~~a~~~~~~~~~-------~~----~~~~~~~l~~~la~~~~~~---~~i~~~sgt~al~~~l~~l---~~~~gd   77 (373)
T 3frk_A           15 IEYEIKFKFEEIYKRNW-------FI----LGDEDKKFEQEFADYCNVN---YCIGCGNGLDALHLILKGY---DIGFGD   77 (373)
T ss_dssp             HHHHHHHHHHHHHHHTC-------CS----SSHHHHHHHHHHHHHHTSS---EEEEESCHHHHHHHHHHHT---TCCTTC
T ss_pred             CCHHHHHHHHHHHHCCC-------cc----CCchHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHc---CCCCcC
Confidence            35666777766665421       11    1355678999999999985   7899999999999999987   478999


Q ss_pred             EEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC-CCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhc
Q 017640          159 EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN-DDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDV  237 (368)
Q Consensus       159 ~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~  237 (368)
                      +|+++.++|+++...    ++..|++++.++.+ +++.+|+++|++++++++++|+   ++||||...|+++|.++|++|
T Consensus        78 ~Vi~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~---~~n~~G~~~~l~~i~~l~~~~  150 (373)
T 3frk_A           78 EVIVPSNTFIATALA----VSYTGAKPIFVEPDIRTYNIDPSLIESAITEKTKAII---AVHLYGQPADMDEIKRIAKKY  150 (373)
T ss_dssp             EEEEETTSCTHHHHH----HHHHSCEEEEECEETTTTEECGGGTGGGCCTTEEEEE---EECCTTCCCCHHHHHHHHHHH
T ss_pred             EEEECCCCcHHHHHH----HHHcCCEEEEEeccccccCcCHHHHHHhcCCCCeEEE---EECCCcCcccHHHHHHHHHHc
Confidence            999999999996654    34559999999988 5688899999999999998888   667899999999999999999


Q ss_pred             CCEEEEecCCcCCcccccCCCCC--ccEEEecCc--CcCCCCc-ceEEEEcc-cccccCCCcccCCcceeecccCCCCCC
Q 017640          238 GAKVLVDACQSVPHMVVDVQGLD--ADFLVASSH--KMCGPTG-IGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFA  311 (368)
Q Consensus       238 g~~li~D~a~~~~~~~~~~~~~~--~d~~~~s~~--K~~g~~G-~G~l~~~~-~li~~l~~~~~g~~~~~~~~~~~~~~~  311 (368)
                      |+++|+|++|+.|.. ++....+  .|++++|++  |.+|+.| +|+++.++ ++++.+++...++....        +.
T Consensus       151 ~~~li~D~a~~~g~~-~~~~~~~~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~--------~~  221 (373)
T 3frk_A          151 NLKLIEDAAQAHGSL-YKGMKVGSLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIKALSNYGSEKK--------YH  221 (373)
T ss_dssp             TCEEEEECTTCTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSSCEEEEESCHHHHHHHHHHHBTTCSBT--------TB
T ss_pred             CCEEEEECCcccCCE-ECCEeccccccEEEEeCcCCCccCccceeEEEEeCCHHHHHHHHHHHhcCcccC--------Cc
Confidence            999999999998776 4444444  789999966  9888744 78888765 46566655544333210        00


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          312 DPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       312 ~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                          ....|...  .+..+.+++......+++.+.++..++.+++.+.|.++
T Consensus       222 ----~~~~g~~~--~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  267 (373)
T 3frk_A          222 ----HIYKGFNS--RLDELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINNP  267 (373)
T ss_dssp             ----CCSCCCBC--CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCT
T ss_pred             ----cccccccC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence                01111100  11223333444444467888899999999999988765

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.92  E-value=1.1e-24  Score=206.06  Aligned_cols=268  Identities=10%  Similarity=0.031  Sum_probs=184.2

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHH-HHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC-----CCC--c
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQN-YYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-----DSG--E  131 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-----~~~--~  131 (368)
                      ++++.|..+      ...+.++.+.+++.+ .+......    .+..    .....++|+.++++++..     +++  +
T Consensus        26 ~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~----~y~~----~~g~~~lr~~la~~~~~~~~~~~~~~~~~   97 (397)
T 3fsl_A           26 SDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGAS----LYLP----MEGLNCYRHAIAPLLFGADHPVLKQQRVA   97 (397)
T ss_dssp             SCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCC----CCCC----TTCCHHHHHHHHHHHHCTTCHHHHTTCEE
T ss_pred             CCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccc----cCCC----CCchHHHHHHHHHHHhcCCcccccccceE
Confidence            456677666      333556899999988 76531110    1110    122337888888888542     235  7


Q ss_pred             EEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeC--CCCCCCCHHHHHHhcc---
Q 017640          132 IVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL--NDDESPDLDKLKEMLS---  206 (368)
Q Consensus       132 v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~--~~~~~~d~~~l~~~l~---  206 (368)
                      |++|+|+++++..+++.+.  .+++||+|++.+|+|++.    ...++..|++++.++.  ++++.+|+++|+++++   
T Consensus        98 i~~t~g~~~a~~~~~~~~~--~~~~gd~vl~~~p~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~  171 (397)
T 3fsl_A           98 TIQTLGGSGALKVGADFLK--RYFPESGVWVSDPTWENH----VAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQ  171 (397)
T ss_dssp             EEEESHHHHHHHHHHHHHH--HHCTTCCEEEESSCCHHH----HHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTCC
T ss_pred             EEEcCCcHHHHHHHHHHHH--hcCCCCeEEEeCCCchhH----HHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCC
Confidence            8999999999999954321  168999999999988874    4455667999999998  4568889999999998   


Q ss_pred             cCceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCccc-------c-cC-CCCCccEEEecCcCcCCC
Q 017640          207 RKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV-------V-DV-QGLDADFLVASSHKMCGP  274 (368)
Q Consensus       207 ~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~~-------~-~~-~~~~~d~~~~s~~K~~g~  274 (368)
                      ++++++++++++||||.+++   +++|.++|++||+++|+|++|+.....       + .+ ...+.+++++|+||.+|+
T Consensus       172 ~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~  251 (397)
T 3fsl_A          172 AGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSL  251 (397)
T ss_dssp             TTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTC
T ss_pred             CCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccC
Confidence            57799999999999999988   558999999999999999999843321       1 11 223567899999999998


Q ss_pred             Cc--ceEEEE---cccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-----HhCHHH
Q 017640          275 TG--IGFLFG---KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS-----TIGMQK  344 (368)
Q Consensus       275 ~G--~G~l~~---~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~-----~~g~~~  344 (368)
                      +|  +|++++   ++++++.+.......                 .+....+++.....++..+++...     ...++.
T Consensus       252 ~G~riG~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  314 (397)
T 3fsl_A          252 YGERVGGLSVMCEDAEAAGRVLGQLKAT-----------------VRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEE  314 (397)
T ss_dssp             GGGCCEEEEEECSSHHHHHHHHHHHHHH-----------------HHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred             cCCCeeEEEEecCCHHHHHHHHHHHHHH-----------------HHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            88  899875   234443222111000                 001112444445555544444210     223678


Q ss_pred             HHHHHHHHHHHHHHHHHhhc
Q 017640          345 IHAYEVKWIICSIIVIQERH  364 (368)
Q Consensus       345 i~~~~~~l~~~l~~~l~~~~  364 (368)
                      ++++..++.+++.+.|.+..
T Consensus       315 ~~~~~~~~~~~l~~~L~~~~  334 (397)
T 3fsl_A          315 MRTRILAMRQELVKVLSTEM  334 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHhcC
Confidence            88899999999999998874

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.92  E-value=6e-24  Score=201.27  Aligned_cols=250  Identities=14%  Similarity=0.173  Sum_probs=186.4

Q ss_pred             CcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCC
Q 017640           79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD  158 (368)
Q Consensus        79 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd  158 (368)
                      .++.+.+++.+.+...+..+      .    .+...++|+.+++++|.+   ++++++|+++|+..++.++   .+++||
T Consensus        10 ~~~~v~~a~~~~~~~~~~~~------~----g~~~~~l~~~la~~~~~~---~v~~~~ggt~al~~~~~~l---~~~~gd   73 (394)
T 1o69_A           10 MGGNELKYIEEVFKSNYIAP------L----GEFVNRFEQSVKDYSKSE---NALALNSATAALHLALRVA---GVKQDD   73 (394)
T ss_dssp             --CCHHHHHHHHHHHTTTSC------T----THHHHHHHHHHHHHHCCS---EEEEESCHHHHHHHHHHHT---TCCTTC
T ss_pred             CCHHHHHHHHHHHHcCCccC------C----ChHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHc---CCCCCC
Confidence            45677888887776521111      0    134668999999999983   8999999999999999987   378999


Q ss_pred             EEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc---CceEEEEcccccccccccCHHHHHHHHH
Q 017640          159 EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR---KTKLVVIHHISNMLASILPIEEIVHWSH  235 (368)
Q Consensus       159 ~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~---~~~~v~~~~~~n~tG~~~~l~~i~~l~~  235 (368)
                      +|++++++|++....+.    ..|++++.++.++++.+|+++|++++++   ++++|++++   |||...++++|.++|+
T Consensus        74 ~Vl~~~~~~~~~~~~~~----~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~l~~i~~l~~  146 (394)
T 1o69_A           74 IVLASSFTFIASVAPIC----YLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH---LYGNAAKMDEIVEICK  146 (394)
T ss_dssp             EEEEESSSCGGGTHHHH----HTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCCHHHHHHHHH
T ss_pred             EEEECCCccHHHHHHHH----HcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC---CCCChhhHHHHHHHHH
Confidence            99999999999765543    4699999999987888999999999976   789999886   7999999999999999


Q ss_pred             hcCCEEEEecCCcCCcccccC--CC-CCccEEEecCcCcCCCCcceEEEEc-ccccccCCCcccCCcceeecccCCCCCC
Q 017640          236 DVGAKVLVDACQSVPHMVVDV--QG-LDADFLVASSHKMCGPTGIGFLFGK-SDLLSAMPPFLGGGEMISDVFLDHSTFA  311 (368)
Q Consensus       236 ~~g~~li~D~a~~~~~~~~~~--~~-~~~d~~~~s~~K~~g~~G~G~l~~~-~~li~~l~~~~~g~~~~~~~~~~~~~~~  311 (368)
                      ++|+++|+|++|+.|....+.  .. .++|++++|.+|.+++.++|+++++ +++++.+++...++..      ....+.
T Consensus       147 ~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~~~~~G~~~~~~~~l~~~l~~~~~~~~~------~~~~~~  220 (394)
T 1o69_A          147 ENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARE------NCLHYE  220 (394)
T ss_dssp             HTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCC------SSSSCC
T ss_pred             HcCCEEEEECcCcccceeCCcccccccCcEEEEEeCCccCCCCCceEEEECCHHHHHHHHHHHHhccc------cCcccc
Confidence            999999999999976543221  11 2477888888998888789999996 6777766543222211      001122


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          312 DPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       312 ~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      ....++..+++++...+++.. +++     ++...++.+++.+++.+.|.+.
T Consensus       221 ~~~~g~~~~~~~~~aa~~l~~-l~~-----l~~~~~~~~~~~~~l~~~L~~~  266 (394)
T 1o69_A          221 HLDYGYNYRLSNVLGAIGVAQ-MEV-----LEQRVLKKREIYEWYKEFLGEY  266 (394)
T ss_dssp             CSSCCCBCBCCHHHHHHHHHH-HTT-----HHHHHHHHHHHHHHHHHHHTTT
T ss_pred             ccccCcccCcCHHHHHHHHHH-HHH-----HHHHHHHHHHHHHHHHHHhccc
Confidence            233456666888877776543 443     3446688888888888888764

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.92  E-value=8.6e-25  Score=206.49  Aligned_cols=215  Identities=20%  Similarity=0.266  Sum_probs=166.7

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      .+...++++.++++++.+  +.|++++| ++|+..++.++    +++||+|++.+++|++++..+...++..|++++.++
T Consensus        51 ~~~~~~l~~~la~~~~~~--~~i~~~sG-t~a~~~~~~~~----~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~  123 (386)
T 1cs1_A           51 NPTRDVVQRALAELEGGA--GAVLTNTG-MSAIHLVTTVF----LKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD  123 (386)
T ss_dssp             CHHHHHHHHHHHHHHTCS--EEEEESSH-HHHHHHHHHHH----CCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEEC
T ss_pred             CccHHHHHHHHHHHhCCC--cEEEeCCH-HHHHHHHHHHH----hCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeC
Confidence            345668999999999986  36666555 89999999998    789999999999999988777777778899999998


Q ss_pred             CCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCc
Q 017640          190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH  269 (368)
Q Consensus       190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~  269 (368)
                      .+     |+++|++++++++++|++++++||||.+.|+++|.++|++||+++|+|++|+.+...... ..++|+++.|+|
T Consensus       124 ~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~~~~di~~~s~s  197 (386)
T 1cs1_A          124 QG-----DEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPL-ALGADLVLHSCT  197 (386)
T ss_dssp             TT-----CHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGG-GGTCSEEEEETT
T ss_pred             CC-----CHHHHHHhhccCCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCcc-ccCceEEEEcCc
Confidence            75     899999999989999999999999999999999999999999999999999977653323 357999999999


Q ss_pred             CcCCCCc--c-eEEEEcc-cccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 017640          270 KMCGPTG--I-GFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI  345 (368)
Q Consensus       270 K~~g~~G--~-G~l~~~~-~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i  345 (368)
                      |++|.+|  + |++++++ ++++.+.+...+++                     ++.+....+++..+++.     +...
T Consensus       198 K~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~---------------------~~~~~~~~~~~~~~l~~-----~~~~  251 (386)
T 1cs1_A          198 KYLNGHSDVVAGVVIAKDPDVVTELAWWANNIG---------------------VTGGAFDSYLLLRGLRT-----LVPR  251 (386)
T ss_dssp             TTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHT---------------------CBCCHHHHHHHHHHHTT-----HHHH
T ss_pred             ccccCCCCceeEEEEeCcHHHHHHHHHHHHhcC---------------------CCCCHHHHHHHHhcccH-----HHHH
Confidence            9887554  2 9999987 77777665443211                     24455444444444443     2333


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 017640          346 HAYEVKWIICSIIVIQER  363 (368)
Q Consensus       346 ~~~~~~l~~~l~~~l~~~  363 (368)
                      .++..+..+.+.+.+.++
T Consensus       252 ~~~~~~~~~~l~~~l~~~  269 (386)
T 1cs1_A          252 MELAQRNAQAIVKYLQTQ  269 (386)
T ss_dssp             HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhcC
Confidence            445555666666666554

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.92  E-value=2.2e-24  Score=209.02  Aligned_cols=279  Identities=12%  Similarity=0.008  Sum_probs=194.1

Q ss_pred             EeccCCCCCCcHHHHH-HHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCC--------CcEEEeCCHHH
Q 017640           70 YLDNAATSQKPIAVLK-ALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDS--------GEIVFTKNATE  140 (368)
Q Consensus        70 ~l~~~~~~~~~~~v~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~--------~~v~~t~g~t~  140 (368)
                      |+++-..+..++.+.. .+...+   +.+  ...+..++...++.+++.+++++++|.+..        ...+||+|+|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~---n~~--~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~  150 (475)
T 3k40_A           76 FHAYFPTANSYPAIVADMLSGAI---ACI--GFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASE  150 (475)
T ss_dssp             BCCSSCCCCCHHHHHHHHHHHHH---CCC--SSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHH
T ss_pred             ceeeCCCCCcHHHHHHHHHHHHh---Ccc--ccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHH
Confidence            5666544444444433 333322   222  234455677788888999999999999843        26899999999


Q ss_pred             HHHHHHHHccCCC---------------CCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhc
Q 017640          141 AINLVAYSWGLSN---------------LKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEML  205 (368)
Q Consensus       141 a~~~~~~~~~~~~---------------~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l  205 (368)
                      ++..++.+.+...               +.++++|+++..+|+++..    .++..|++++.|++++++ +|+++|+++|
T Consensus       151 anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~----~~~~~g~~~~~v~~d~~~-~d~~~L~~~i  225 (475)
T 3k40_A          151 STLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVER----AGLLGGVKLRSVQSENHR-MRGAALEKAI  225 (475)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHH----HHHHHTCEEEEECCBTTB-CCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchHHHHH----HHHHcCCceEEEECCCCC-cCHHHHHHHH
Confidence            9998887752110               1135689999999999554    345569999999999889 9999999999


Q ss_pred             ccC------ceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCccccc-C----CC-CCccEEEecCcC-cC
Q 017640          206 SRK------TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD-V----QG-LDADFLVASSHK-MC  272 (368)
Q Consensus       206 ~~~------~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~-~----~~-~~~d~~~~s~~K-~~  272 (368)
                      +++      +.+|++++++|+||.+.|+++|+++|++||+++++|++|+.+....+ .    .. ...|++++++|| ++
T Consensus       226 ~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~  305 (475)
T 3k40_A          226 EQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWML  305 (475)
T ss_dssp             HHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSS
T ss_pred             HHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccC
Confidence            764      67899999999999999999999999999999999999987644211 1    11 146999999999 55


Q ss_pred             CCCcceEEEEcccc-cc-cCC---CcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Q 017640          273 GPTGIGFLFGKSDL-LS-AMP---PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHA  347 (368)
Q Consensus       273 g~~G~G~l~~~~~l-i~-~l~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~  347 (368)
                      +|.|+|+++++++. +. .+.   +++.+...  .     ..+......++.+.+  ...+++..+++.+...|++.+.+
T Consensus       306 ~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~--~-----~~~~~~~~~~~~sr~--~~~l~l~~al~~~g~~g~~~~~~  376 (475)
T 3k40_A          306 VNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQ--G-----SAPDYRHWQIPLGRR--FRALKLWFVLRLYGVENLQAHIR  376 (475)
T ss_dssp             CCSSCEEEEESSGGGC----------------------------------CCCGG--GTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEEeCHHHHHHHhcCCccccCCCcC--C-----CCCCcccccccCCCc--ccHHHHHHHHHHHhHHHHHHHHH
Confidence            68899999998753 22 111   11111000  0     000001112222222  24567788888888889999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCC
Q 017640          348 YEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       348 ~~~~l~~~l~~~l~~~~g~t  367 (368)
                      +..++++++.+.|++++|++
T Consensus       377 ~~~~~a~~l~~~L~~~~g~~  396 (475)
T 3k40_A          377 RHCNFAKQFGDLCVADSRFE  396 (475)
T ss_dssp             HHHHHHHHHHHHHHHSTTEE
T ss_pred             HHHHHHHHHHHHHhcCCCEE
Confidence            99999999999999988764

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.92  E-value=2.3e-24  Score=205.53  Aligned_cols=265  Identities=10%  Similarity=0.009  Sum_probs=183.5

Q ss_pred             CCeEEeccCCC-----C-CCcHHHHHHHHHHHHH-hhccCCCCcchhhHHHHHHHHHHHHHHHHHc----CCCCCCcEEE
Q 017640           66 KKLVYLDNAAT-----S-QKPIAVLKALQNYYEA-YNSNVHRGIHFLSAKATDEYELARKKVAAFI----NASDSGEIVF  134 (368)
Q Consensus        66 ~~~i~l~~~~~-----~-~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~~~~~v~~  134 (368)
                      .+++.|..+.+     . ++++.+.+++.+.... ...++.          .....++|+++++++    +.+..++|++
T Consensus        38 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~----------~~g~~~lr~~ia~~~~~~~~~~~~~~i~~  107 (418)
T 3rq1_A           38 ENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAP----------IAGIPDFLCAAEKECFGNFRPEGHIRSIA  107 (418)
T ss_dssp             GGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSCCC----------TTCCHHHHHHHHHHHHGGGCCSSEEEEEE
T ss_pred             CCeEECCCCcccCCCCCccccHHHHHHHHHhcccccCCCCC----------CCChHHHHHHHHHHHhcccCccccccEEE
Confidence            46788888864     3 6788888887664432 111111          111236777777765    3221128999


Q ss_pred             eCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC-CCCCCCHHHHHHhccc----Cc
Q 017640          135 TKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN-DDESPDLDKLKEMLSR----KT  209 (368)
Q Consensus       135 t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~l~~----~~  209 (368)
                      |+|+++|+..++.++    +++||+|++++|.|++.    ...++..|++++.++++ +++.+|+++|++++++    ++
T Consensus       108 t~g~~~al~~~~~~l----~~~gd~Vl~~~p~~~~~----~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~  179 (418)
T 3rq1_A          108 TAGGTGGIHHLIHNY----TEPGDEVLTADWYWGAY----RVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQT  179 (418)
T ss_dssp             ESHHHHHHHHHHHHH----SCTTCEEEEESSCCTHH----HHHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCS
T ss_pred             CCchHHHHHHHHHHh----cCCCCEEEECCCCchhH----HHHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCC
Confidence            999999999999998    89999999999988874    44556779999999985 5578999999999975    66


Q ss_pred             e-EEEEccc-ccccccccCH---HHHHHHHH------hcCCEEEEecCCcCCcc------cc--cCCCCCcc---EEEec
Q 017640          210 K-LVVIHHI-SNMLASILPI---EEIVHWSH------DVGAKVLVDACQSVPHM------VV--DVQGLDAD---FLVAS  267 (368)
Q Consensus       210 ~-~v~~~~~-~n~tG~~~~l---~~i~~l~~------~~g~~li~D~a~~~~~~------~~--~~~~~~~d---~~~~s  267 (368)
                      + +++++++ +||||.++|.   ++|+++|+      +||+++|+|++|.....      ++  .......+   +++.|
T Consensus       180 ~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S  259 (418)
T 3rq1_A          180 NVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYS  259 (418)
T ss_dssp             EEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEE
T ss_pred             CEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEe
Confidence            5 8889999 9999999995   45556666      89999999999862111      11  11222233   78889


Q ss_pred             CcCcCCCCc--ceEEEE---cccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-----
Q 017640          268 SHKMCGPTG--IGFLFG---KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL-----  337 (368)
Q Consensus       268 ~~K~~g~~G--~G~l~~---~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~-----  337 (368)
                      +||.+|.+|  +|++++   ++++++.+........                 +....+++..+..++..+++..     
T Consensus       260 ~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~a~~~~l~~~~~~~~  322 (418)
T 3rq1_A          260 LSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTS-----------------RATWSNICRPAMRTMANIVADPAKFKE  322 (418)
T ss_dssp             STTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHH-----------------HHHTSSCCHHHHHHHHHHHTCHHHHHH
T ss_pred             CCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHH-----------------hhccCCCchHHHHHHHHHhCCHHHHHH
Confidence            999999777  899998   8888877654321000                 0001246666666666666432     


Q ss_pred             -HHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          338 -STIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       338 -~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                       .+ ..+.++++.++..+++.+.|.++ |++
T Consensus       323 ~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~  351 (418)
T 3rq1_A          323 YEA-ERNCYYQLIRDRADIFKQEAAQV-GLP  351 (418)
T ss_dssp             HHH-HHHHHHHHHHHHHHHHHHHHHHH-TCC
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHhc-CCC
Confidence             11 24567778888888888888876 543

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.92  E-value=3.5e-24  Score=204.10  Aligned_cols=162  Identities=18%  Similarity=0.227  Sum_probs=139.6

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      .+..+++++.+++++|.+   ++++++|+++|+..++.++    +++||+|++++++|++++..+...++..|++++.++
T Consensus        55 ~~~~~~l~~~la~~~g~~---~~~~~~~gt~a~~~al~~l----~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~  127 (412)
T 2cb1_A           55 DPTAKALEERLKALEGAL---EAVVLASGQAATFAALLAL----LRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVD  127 (412)
T ss_dssp             CHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHTT----CCTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEEC
T ss_pred             ChHHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHH----hCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEEC
Confidence            456778999999999975   7899999999999999987    789999999999999988777665677899999998


Q ss_pred             CCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCc
Q 017640          190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH  269 (368)
Q Consensus       190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~  269 (368)
                      .      |+++|++++++++++|++++++||||.+.|+++|.++|++||+++|+|++|+.+.........+.|++++|+|
T Consensus       128 ~------~~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~di~~~S~~  201 (412)
T 2cb1_A          128 P------EPEAVREALSAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVESLT  201 (412)
T ss_dssp             S------SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTSCCGGGGTCSEEEEETT
T ss_pred             C------CHHHHHHHhccCCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCccccccCCccccCCeEEEECCc
Confidence            6      4899999999999999999999999999999999999999999999999999773222222457999999999


Q ss_pred             CcCCC-Cc-ceEEEEcc
Q 017640          270 KMCGP-TG-IGFLFGKS  284 (368)
Q Consensus       270 K~~g~-~G-~G~l~~~~  284 (368)
                      |+++. .+ +|++++.+
T Consensus       202 K~~~~~~~~~G~~~~~~  218 (412)
T 2cb1_A          202 KWASGHGSVLGGAVLSR  218 (412)
T ss_dssp             TTTTCSSCCCCEEEEEC
T ss_pred             ccccCCCCcEEEEEEec
Confidence            98864 44 67777665

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.92  E-value=1.4e-24  Score=205.65  Aligned_cols=174  Identities=18%  Similarity=0.188  Sum_probs=147.9

Q ss_pred             HHHHHHHHHHHcCCCCCCcEEE--eCCHHHHHHHHHHHccCCCCCCCCEEEEcC-CCCcccHHHHH------HHHHHcCC
Q 017640          113 YELARKKVAAFINASDSGEIVF--TKNATEAINLVAYSWGLSNLKSGDEVILTV-AEHHSAIVPWQ------LVAQKTGA  183 (368)
Q Consensus       113 ~~~~r~~la~~~~~~~~~~v~~--t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~-~~~~s~~~~~~------~~~~~~g~  183 (368)
                      .+++++.+|+++|.+.  .+++  ++|+++|+..++.++    +++||+|++.+ +.|.+....+.      ..++..|+
T Consensus        61 ~~~Le~~lA~l~g~e~--alv~p~~~sGt~Ai~~al~al----l~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~  134 (409)
T 3jzl_A           61 RDTLERVYATVFKTEA--ALVRPQIISGTHAISTVLFGI----LRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHI  134 (409)
T ss_dssp             HHHHHHHHHHHHTCSE--EEEETTSCSHHHHHHHHHHHH----CCTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTC
T ss_pred             HHHHHHHHHHHhCCCc--EEEECCCccHHHHHHHHHHHh----cCCCCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCC
Confidence            6679999999999863  4444  889999999999998    89999999998 88887543221      23456799


Q ss_pred             EEEEEeCCCCCCCCHHHHHHhcccCceEEEEcc----cccccccccCHHHHHHHHHh--cCCEEEEecCCcCCcccccCC
Q 017640          184 NLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHH----ISNMLASILPIEEIVHWSHD--VGAKVLVDACQSVPHMVVDVQ  257 (368)
Q Consensus       184 ~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~----~~n~tG~~~~l~~i~~l~~~--~g~~li~D~a~~~~~~~~~~~  257 (368)
                      +++.++.++++.+|++++++++++++++|++++    ++||||.+.|+++|.++|++  ||+++++|++|+.+....+..
T Consensus       135 ~~~~v~~~~~g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~~~~~~~p~  214 (409)
T 3jzl_A          135 GYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPP  214 (409)
T ss_dssp             EEEECCCCTTSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTTSSCCSG
T ss_pred             EEEEeCCCCCCCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCcccccccCCcc
Confidence            999999988899999999999999999999999    99999999999999999999  999999999999776333334


Q ss_pred             CCCccEEEecCcCcCCCCc---ceEEEEcccccccCCC
Q 017640          258 GLDADFLVASSHKMCGPTG---IGFLFGKSDLLSAMPP  292 (368)
Q Consensus       258 ~~~~d~~~~s~~K~~g~~G---~G~l~~~~~li~~l~~  292 (368)
                      ..+.|++++|+||.+|+.|   .|++++++++++.++.
T Consensus       215 ~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~  252 (409)
T 3jzl_A          215 EVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGY  252 (409)
T ss_dssp             GGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHH
T ss_pred             ccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHH
Confidence            4679999999999887654   5999999999887764

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.92  E-value=4e-25  Score=212.63  Aligned_cols=215  Identities=19%  Similarity=0.220  Sum_probs=170.6

Q ss_pred             HHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeC
Q 017640          111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL  190 (368)
Q Consensus       111 ~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~  190 (368)
                      ...+++++.+++ +|.+  +++++|+|+|+++..++.++    +++||+|+++.++|++....+..    .|+++++++.
T Consensus        57 ~~~~~~~~~la~-~g~~--~~v~~~~G~t~a~~~~~~a~----~~~gd~Vlv~~~~h~s~~~~~~~----~G~~~~~v~~  125 (446)
T 2x3l_A           57 EVILKSMKQVEK-HSDY--DGYFLVNGTTSGILSVIQSF----SQKKGDILMARNVHKSVLHALDI----SQQEGHFIET  125 (446)
T ss_dssp             SHHHHHHHHHCS-CTTE--EEEEESSHHHHHHHHHHHTT----TTSSSCEEECTTCCHHHHHHHHH----HTCCEEECEE
T ss_pred             hHHHHHHHHHHh-cCCC--ceEEEeCCHHHHHHHHHHHh----cCCCCEEEEecCccHHHHHHHHH----cCCeEEEEeC
Confidence            456789999999 9987  48999999999999999988    88999999999999997765443    5999999988


Q ss_pred             --CCC----CCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcc-----cccCCCC
Q 017640          191 --NDD----ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM-----VVDVQGL  259 (368)
Q Consensus       191 --~~~----~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~-----~~~~~~~  259 (368)
                        +++    +.+|+++|   +.+++++|++++ .|++|.+.|+++|.++|++||+++|+|++|+. ..     +.+....
T Consensus       126 ~~~~~~~~~~~~d~~~l---~~~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~-~~~f~~~~~~~~~~  200 (446)
T 2x3l_A          126 HQSPLTNHYNKVNLSRL---NNDGHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGA-HFGLQGFPDSTLNY  200 (446)
T ss_dssp             EECTTTSSEEEEEC----------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCT-TTTSTTSCCCGGGG
T ss_pred             eeccccCcCCCCCHHHH---cCCCceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhh-hhccCCCCCChHHc
Confidence              554    56788877   556789999999 67799999999999999999999999999986 22     3344445


Q ss_pred             CccEEEecCcC-cCCCCcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 017640          260 DADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS  338 (368)
Q Consensus       260 ~~d~~~~s~~K-~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~  338 (368)
                      ++|+++.|+|| ++|+.|+|++++++++++ +.+...++                 ..+..+++++..++++..+++++.
T Consensus       201 g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~-~~~~~~~~-----------------~~~~~~s~~~~~~aal~~a~~~l~  262 (446)
T 2x3l_A          201 QADYVVQSFHKTLPALTMGSVLYIHKNAPY-RENIIEYL-----------------SYFQTSSPSYLIMASLESAAQFYK  262 (446)
T ss_dssp             TCSEEEECHHHHSSSCTTCEEEEEETTCTT-HHHHHHHH-----------------HHHSCSSCCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEECCccccccccccEEEEEcCCcCC-HHHHHHHH-----------------HHHcCCCchHHHHHHHHHHHHHHH
Confidence            78999999999 677888999999998765 22221110                 234567899999999999999999


Q ss_pred             HhCHHHHHHHHHHHHHHHHHH
Q 017640          339 TIGMQKIHAYEVKWIICSIIV  359 (368)
Q Consensus       339 ~~g~~~i~~~~~~l~~~l~~~  359 (368)
                      ..|.+.+.++..++++++.+.
T Consensus       263 ~~g~~~~~~~~~~l~~~l~~~  283 (446)
T 2x3l_A          263 TYDSTLFFAKRAQLIECLENK  283 (446)
T ss_dssp             HCCCHHHHHHHHHHHHHHHHH
T ss_pred             HhCHHHHHHHHHHHHHHHHHc
Confidence            888777888999988888776

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.92  E-value=3.5e-24  Score=204.57  Aligned_cols=265  Identities=14%  Similarity=0.009  Sum_probs=183.0

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC-----CCC--cE
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-----DSG--EI  132 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-----~~~--~v  132 (368)
                      ++++.|..+      ...++++.+.+++.+.+......    .+..    .....++|+.++++++..     +++  +|
T Consensus        49 ~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~----~Y~~----~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i  120 (420)
T 4f4e_A           49 PTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPR----GYLP----IDGIAAYDASVQKLLLGDDSPLIAAGRVVT  120 (420)
T ss_dssp             SSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCC----CCCC----TTCCHHHHHHHHHHHHCTTCHHHHTTCEEE
T ss_pred             CCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCC----CCCC----CCCcHHHHHHHHHHhcCCCccccccCceEE
Confidence            455677666      33355689999999888751111    1110    122336888888887542     234  79


Q ss_pred             EEeCCHHHHHHHHHH--HccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeC--CCCCCCCHHHHHHhcc--
Q 017640          133 VFTKNATEAINLVAY--SWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL--NDDESPDLDKLKEMLS--  206 (368)
Q Consensus       133 ~~t~g~t~a~~~~~~--~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~--~~~~~~d~~~l~~~l~--  206 (368)
                      ++|+|+++|+..+++  ++    +++||+|++++|+|++.    ...++..|++++.++.  ++++.+|++.|++.++  
T Consensus       121 ~~t~G~t~al~~~~~~~~~----~~~gd~Vlv~~p~~~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~  192 (420)
T 4f4e_A          121 AQALGGTGALKIGADFLRT----LNPKAKVAISDPSWENH----RALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGY  192 (420)
T ss_dssp             EEEEHHHHHHHHHHHHHHH----HCTTCCEEEEESCCHHH----HHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTC
T ss_pred             EECCccHHHHHHHHHHHHH----hCCCCEEEEeCCCcHhH----HHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhC
Confidence            999999999999954  44    68999999999988874    4445667999999998  3568889999999997  


Q ss_pred             -cCceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCccc-------c-cC-CCCCccEEEecCcCcCC
Q 017640          207 -RKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV-------V-DV-QGLDADFLVASSHKMCG  273 (368)
Q Consensus       207 -~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~~-------~-~~-~~~~~d~~~~s~~K~~g  273 (368)
                       ++++++++++++||||.+++   +++|+++|++||+++|+|++|+.....       + .+ ...+.++++.|+||.||
T Consensus       193 ~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  272 (420)
T 4f4e_A          193 EPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFS  272 (420)
T ss_dssp             CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTT
T ss_pred             CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCc
Confidence             67899999999999999998   668889999999999999998743221       1 11 12457799999999999


Q ss_pred             CCc--ceEEEE---cccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-----HhCHH
Q 017640          274 PTG--IGFLFG---KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS-----TIGMQ  343 (368)
Q Consensus       274 ~~G--~G~l~~---~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~-----~~g~~  343 (368)
                      ++|  +|++++   ++++++.+.......                 .+....+++.....++..+++...     ...++
T Consensus       273 ~~G~RiG~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~  335 (420)
T 4f4e_A          273 LYGERVGALSIITDSKDEAARVLSQLKRV-----------------IRTNYSNPPTHGGAIVAAVLASPELRASWVQELG  335 (420)
T ss_dssp             CGGGCEEEEEEECSSHHHHHHHHHHHHHH-----------------HHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CcCCCcEEEEEEcCCHHHHHHHHHHHHHH-----------------HhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            888  899864   334433221110000                 001111344444444444444211     12367


Q ss_pred             HHHHHHHHHHHHHHHHHHhh
Q 017640          344 KIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       344 ~i~~~~~~l~~~l~~~l~~~  363 (368)
                      .++++.+++.+++.+.|+++
T Consensus       336 ~~~~~~~~~~~~l~~~L~~~  355 (420)
T 4f4e_A          336 EMRDRIRAMRNGLVERLKAA  355 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            88889999999999999876

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.92  E-value=2.2e-25  Score=214.23  Aligned_cols=221  Identities=12%  Similarity=0.153  Sum_probs=160.8

Q ss_pred             CCeE-EeccCCCCCCcHHHHHHHHHHHHHhhcc-------CCCCcchhhHHHHHHHHHHHHHHHHHc------CCCCCCc
Q 017640           66 KKLV-YLDNAATSQKPIAVLKALQNYYEAYNSN-------VHRGIHFLSAKATDEYELARKKVAAFI------NASDSGE  131 (368)
Q Consensus        66 ~~~i-~l~~~~~~~~~~~v~~a~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~r~~la~~~------~~~~~~~  131 (368)
                      ++++ +|+++.+.. ++.+.+++.+++.....+       +....+..++.......++|+.+++++      ++++ ++
T Consensus        31 ~~~i~~l~~g~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~-~~  108 (444)
T 3if2_A           31 DQPVNMLGGGNPAK-IDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTS-EN  108 (444)
T ss_dssp             SSCCEECSCCCCCC-CHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCG-GG
T ss_pred             chhhhccCCCCCCc-ccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCH-HH
Confidence            5678 999987665 566777777777665444       320111222222333457888888877      4444 49


Q ss_pred             EEEeCCHHHHHHHHHHHccCCCCCCCC--------------EEEEc-CCCCcccHHHHH--HHHHHcCCEEEEEeCCC-C
Q 017640          132 IVFTKNATEAINLVAYSWGLSNLKSGD--------------EVILT-VAEHHSAIVPWQ--LVAQKTGANLKFLNLND-D  193 (368)
Q Consensus       132 v~~t~g~t~a~~~~~~~~~~~~~~~gd--------------~vl~~-~~~~~s~~~~~~--~~~~~~g~~v~~v~~~~-~  193 (368)
                      |++|+|+++|+.+++.++    +++||              +|++. +|+|++......  ......|.+++.++.++ +
T Consensus       109 i~~t~G~t~al~~~~~~l----~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (444)
T 3if2_A          109 IALTNGSQNAFFYLFNLF----GGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEE  184 (444)
T ss_dssp             EEEESSHHHHHHHHHHHS----SEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEETTEE
T ss_pred             EEEecCcHHHHHHHHHHH----hCCCccccccccccccccceEEEeCCCCccchhhcccccchhhccCceEEeccccccc
Confidence            999999999999999998    77887              78776 888887543110  01233477888888775 2


Q ss_pred             ----CCCCHHHHHHh---cccCceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcccc-----cCCC
Q 017640          194 ----ESPDLDKLKEM---LSRKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMVV-----DVQG  258 (368)
Q Consensus       194 ----~~~d~~~l~~~---l~~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~~~-----~~~~  258 (368)
                          +.+|+++|+++   +.+++++|++++++||||.++|   +++|.++|++||+++|+|++|+.+...+     ....
T Consensus       185 g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~  264 (444)
T 3if2_A          185 GFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLNW  264 (444)
T ss_dssp             EEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCC
T ss_pred             CccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCcccccccccccccC
Confidence                36899999998   6778999999999999999999   8899999999999999999998432211     1122


Q ss_pred             CCccEEEecCcCcCCCCc--ceEEEEcccccccCCCc
Q 017640          259 LDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPF  293 (368)
Q Consensus       259 ~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~~~  293 (368)
                      .+.+++++|+||. +++|  +|++++++++++.+...
T Consensus       265 ~~~~i~~~S~sK~-~~~G~r~G~~~~~~~l~~~~~~~  300 (444)
T 3if2_A          265 DNNTILCFSLSKI-GLPGMRTGIIVADAKVIEAVSAM  300 (444)
T ss_dssp             CTTEEEEEESTTT-TCGGGCCEEEECCHHHHHHHHHH
T ss_pred             CCCEEEEechhhc-cCCCCceEEEEECHHHHHHHHHH
Confidence            4678999999996 6555  89999999888776543

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.92  E-value=1.6e-23  Score=198.63  Aligned_cols=250  Identities=13%  Similarity=0.093  Sum_probs=183.1

Q ss_pred             CcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCC
Q 017640           79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD  158 (368)
Q Consensus        79 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd  158 (368)
                      .++.+.+++.+.+...       .+..    .+...++++.+++++|.+   ++++++|+++|+..++.++   .+++||
T Consensus        42 ~~~~v~~a~~~~~~~~-------~y~~----~~~~~~l~~~la~~~~~~---~~v~~~~Gt~a~~~~l~~~---~~~~gd  104 (399)
T 2oga_A           42 LRAETDAAIARVLDSG-------RYLL----GPELEGFEAEFAAYCETD---HAVGVNSGMDALQLALRGL---GIGPGD  104 (399)
T ss_dssp             THHHHHHHHHHHHHHT-------CCSS----SHHHHHHHHHHHHHTTSS---EEEEESCHHHHHHHHHHHT---TCCTTC
T ss_pred             CCHHHHHHHHHHHhcC-------CCCC----chhHHHHHHHHHHHHCCC---eEEEecCHHHHHHHHHHHh---CCCCcC
Confidence            3488888888877641       1111    245568999999999986   6788888899999999987   368999


Q ss_pred             EEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC-CCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhc
Q 017640          159 EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDV  237 (368)
Q Consensus       159 ~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~  237 (368)
                      +|++++++|++...    .++..|++++.++.++ ++.+|+++|++++++++++|+   ++||||.+.|+++|.++|+++
T Consensus       105 ~vl~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~l~~~~  177 (399)
T 2oga_A          105 EVIVPSHTYIASWL----AVSATGATPVPVEPHEDHPTLDPLLVEKAITPRTRALL---PVHLYGHPADMDALRELADRH  177 (399)
T ss_dssp             EEEEESSSCTHHHH----HHHHTTCEEEEECBCSSSSSBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHH
T ss_pred             EEEECCCccHHHHH----HHHHCCCEEEEEecCCCCCCcCHHHHHHhcCCCCeEEE---EeCCcCCccCHHHHHHHHHHc
Confidence            99999999998543    4456799999999886 578999999999988888877   457899999999999999999


Q ss_pred             CCEEEEecCCcCCcccccCCCCC--ccEEEecC--cCcCCCCc-ceEEEEc-ccccccCCCcccCCcceeecccCCCCCC
Q 017640          238 GAKVLVDACQSVPHMVVDVQGLD--ADFLVASS--HKMCGPTG-IGFLFGK-SDLLSAMPPFLGGGEMISDVFLDHSTFA  311 (368)
Q Consensus       238 g~~li~D~a~~~~~~~~~~~~~~--~d~~~~s~--~K~~g~~G-~G~l~~~-~~li~~l~~~~~g~~~~~~~~~~~~~~~  311 (368)
                      |+++|+|++|+.+.. .+....+  .|++++|+  +|++|++| +|+++++ +++++.+++....+...        .+.
T Consensus       178 ~~~li~Dea~~~g~~-~~~~~~~~~~di~~~S~~~sK~~~~~G~~g~~~~~~~~~~~~l~~~~~~g~~~--------~~~  248 (399)
T 2oga_A          178 GLHIVEDAAQAHGAR-YRGRRIGAGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYGSRQ--------KYS  248 (399)
T ss_dssp             TCEECEECTTCTTCE-ETTEETTCTTCEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHHBTTCSS--------TTC
T ss_pred             CCEEEEECcccccCc-cCCeecccccCEEEEeCCCCccCCcCCceEEEEeCCHHHHHHHHHHHhcCccc--------ccc
Confidence            999999999997754 2322223  68999999  59999866 7888886 67776665443322210        010


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          312 DPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       312 ~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      .....+ ..+.+..+.+++..+++.+     +.+.++..++.+++.+.|.+++|++
T Consensus       249 ~~~~g~-~~~~~~~~~a~~~~~l~~~-----~~~~~~~~~~~~~l~~~L~~~~g~~  298 (399)
T 2oga_A          249 HETKGT-NSRLDEMQAAVLRIRLAHL-----DSWNGRRSALAAEYLSGLAGLPGIG  298 (399)
T ss_dssp             CCSCCC-BCCCCHHHHHHHHHHHHTH-----HHHHHHHHHHHHHHHHHTTTCTTCB
T ss_pred             cccccc-CCCcCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhccCCCcc
Confidence            000011 1244566555555565544     4456777888999999998876643

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.92  E-value=1.1e-23  Score=204.66  Aligned_cols=281  Identities=11%  Similarity=0.004  Sum_probs=197.2

Q ss_pred             EeccCCCCCCcHH-HHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCC---------CcEEEeCCHH
Q 017640           70 YLDNAATSQKPIA-VLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDS---------GEIVFTKNAT  139 (368)
Q Consensus        70 ~l~~~~~~~~~~~-v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~---------~~v~~t~g~t  139 (368)
                      |+++-..+..++. +.+.+...+   +.+.  ..+..++...++.+++.+++++++|.+..         ...++|+|+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~---n~~~--~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt  155 (481)
T 4e1o_A           81 MHAYYPALTSWPSLLGDMLADAI---NCLG--FTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVS  155 (481)
T ss_dssp             BCSSSCCCCCHHHHHHHHHHHHH---CCCC--SSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHH
T ss_pred             eeEeCCCCCCHHHHHHHHHHHHh---Cccc--CCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchH
Confidence            5555444433333 334444333   2222  34455677788888999999999999743         1679999999


Q ss_pred             HHHHHHHHHccCCC---------------CCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHh
Q 017640          140 EAINLVAYSWGLSN---------------LKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEM  204 (368)
Q Consensus       140 ~a~~~~~~~~~~~~---------------~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~  204 (368)
                      +++..++.+.+...               ..+++.|++++.+|+++...    +...|.+++.|++++++.+|+++|+++
T Consensus       156 ~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~----~~~~g~~~~~v~~~~~~~~d~~~Le~~  231 (481)
T 4e1o_A          156 ESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKA----GLISLVKMKFLPVDDNFSLRGEALQKA  231 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHH----HHHHTCEEEEECCCTTSCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchHHHHHH----HHhCCCceEEEEcCCCCcCCHHHHHHH
Confidence            99999988752110               12577999999999995543    455699999999988999999999999


Q ss_pred             cccC------ceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCccccc-C----CC-CCccEEEecCcCc-
Q 017640          205 LSRK------TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD-V----QG-LDADFLVASSHKM-  271 (368)
Q Consensus       205 l~~~------~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~-~----~~-~~~d~~~~s~~K~-  271 (368)
                      |+++      +.+|++++++|+||.+.|+++|+++|++||+++++|++|+.+....+ .    .. ...|++++++||+ 
T Consensus       232 i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l  311 (481)
T 4e1o_A          232 IEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWM  311 (481)
T ss_dssp             HHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHS
T ss_pred             HHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhc
Confidence            9764      67899999999999999999999999999999999999987643211 1    11 1359999999995 


Q ss_pred             CCCCcceEEEEcccc-ccc-CC---CcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHH
Q 017640          272 CGPTGIGFLFGKSDL-LSA-MP---PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIH  346 (368)
Q Consensus       272 ~g~~G~G~l~~~~~l-i~~-l~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~  346 (368)
                      ++|.|+|+++++++. +.. +.   ++......       ...+.......+.+.+  ...+++..++..+...|++.+.
T Consensus       312 ~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~-------~~~~~~~~~~~~~~r~--~~~l~~~~al~~~g~~g~~~~~  382 (481)
T 4e1o_A          312 MVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANS-------GVATDFMHWQIPLSRR--FRSVKLWFVIRSFGVKNLQAHV  382 (481)
T ss_dssp             SCCSSCEEEEESBHHHHHTTTCCCCGGGCCTTT-------TTSCCGGGGSSSSCCC--CTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCceEEEEEeCHHHHHHHhcCCchhccCccc-------CCCCCcccccccCCCC--ccHHHHHHHHHHhHHHHHHHHH
Confidence            558889999988753 222 11   11111000       0000000112222222  2345677778888777899999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCC
Q 017640          347 AYEVKWIICSIIVIQERHNTTL  368 (368)
Q Consensus       347 ~~~~~l~~~l~~~l~~~~g~t~  368 (368)
                      ++..++++++.+.|.+++|+++
T Consensus       383 ~~~~~~a~~l~~~L~~~~g~~~  404 (481)
T 4e1o_A          383 RHGTEMAKYFESLVRNDPSFEI  404 (481)
T ss_dssp             HHHHHHHHHHHHHHHTCTTEEC
T ss_pred             HHHHHHHHHHHHHHhcCCCeEE
Confidence            9999999999999999888653

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.92  E-value=4e-24  Score=202.13  Aligned_cols=170  Identities=20%  Similarity=0.264  Sum_probs=147.4

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      .+...++++.+++++|.+   ++++++|+++|+..++.++    +++||+|+++++.|+++...+...++..|++++.++
T Consensus        58 ~~~~~~l~~~la~~~g~~---~~i~~~sG~~ai~~~~~~~----~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~  130 (389)
T 3acz_A           58 NPTVEQFEEMVCSIEGAA---GSAAFGSGMGAISSSTLAF----LQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLID  130 (389)
T ss_dssp             CHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHTTT----CCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             ChHHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHH----hCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEEC
Confidence            456778999999999986   5566777889999999887    789999999999999988877777788899999999


Q ss_pred             CCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcc--cccCCCCCccEEEec
Q 017640          190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM--VVDVQGLDADFLVAS  267 (368)
Q Consensus       190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~--~~~~~~~~~d~~~~s  267 (368)
                      ..     |++++++++++++++|++++++||||.+.|+++|.++|++||+++|+|++|+.+..  +++   .++|+++.|
T Consensus       131 ~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~~~~~---~~~di~~~S  202 (389)
T 3acz_A          131 TS-----DVEKVKAAWKPNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLE---LGADIALHS  202 (389)
T ss_dssp             TT-----CHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGGG---TTCSEEEEE
T ss_pred             CC-----CHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccccCccc---cCCeEEEEC
Confidence            74     89999999999999999999999999999999999999999999999999987653  333   579999999


Q ss_pred             CcCcCCCCc---ceEEEEcc-cccccCCCcc
Q 017640          268 SHKMCGPTG---IGFLFGKS-DLLSAMPPFL  294 (368)
Q Consensus       268 ~~K~~g~~G---~G~l~~~~-~li~~l~~~~  294 (368)
                      ++|++|.+|   +|++++++ ++++.+++..
T Consensus       203 ~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~  233 (389)
T 3acz_A          203 VSKYINGHGDVIGGVSSAKTAEDIATIKFYR  233 (389)
T ss_dssp             TTTTTTCSSCCCCEEEEESSHHHHHHHHHHH
T ss_pred             ChhhccCCCCceeEEEEECcHHHHHHHHHHH
Confidence            999776554   49999999 8887766443

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.92  E-value=9e-24  Score=198.08  Aligned_cols=247  Identities=16%  Similarity=0.131  Sum_probs=177.3

Q ss_pred             CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCC
Q 017640           78 QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSG  157 (368)
Q Consensus        78 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~g  157 (368)
                      +.++.+.+++.+.+....       +.    ..+...++|+.+++++|.+   ++++++|+|+|+..++.++   .+++|
T Consensus        13 ~~~~~v~~a~~~~~~~~~-------~~----~~~~~~~l~~~la~~~~~~---~~~~~~sGt~al~~al~~~---~~~~g   75 (367)
T 3nyt_A           13 RIKDKIDAGIQRVLRHGQ-------YI----LGPEVTELEDRLADFVGAK---YCISCANGTDALQIVQMAL---GVGPG   75 (367)
T ss_dssp             HHHHHHHHHHHHHHHHCC-------CS----SCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHT---TCCTT
T ss_pred             ccCHHHHHHHHHHHhcCC-------cc----CChHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHh---CCCCc
Confidence            346677777777665421       11    1244668999999999986   7899999999999999987   47899


Q ss_pred             CEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC-CCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHh
Q 017640          158 DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHD  236 (368)
Q Consensus       158 d~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~  236 (368)
                      |+|+++.++|+++...    ++..|+++++++++++ +.+|+++|++++++++++|+   ++|+||...|+++|.++|++
T Consensus        76 d~Vi~~~~~~~~~~~~----~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~~~~G~~~~~~~i~~la~~  148 (367)
T 3nyt_A           76 DEVITPGFTYVATAET----VALLGAKPVYVDIDPRTYNLDPQLLEAAITPRTKAII---PVSLYGQCADFDAINAIASK  148 (367)
T ss_dssp             CEEEEESSSCTHHHHH----HHHTTCEEEEECBCTTTCSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHH
T ss_pred             CEEEECCCccHHHHHH----HHHcCCEEEEEecCCccCCcCHHHHHHhcCcCCcEEE---eeCCccChhhHHHHHHHHHH
Confidence            9999999999986544    4556999999999866 89999999999998988888   66789999999999999999


Q ss_pred             cCCEEEEecCCcCCcccccCCCCCc--cEEEecC--cCcCCCCc-ceEEEEc-ccccccCCCcccCCcceeecccCCCCC
Q 017640          237 VGAKVLVDACQSVPHMVVDVQGLDA--DFLVASS--HKMCGPTG-IGFLFGK-SDLLSAMPPFLGGGEMISDVFLDHSTF  310 (368)
Q Consensus       237 ~g~~li~D~a~~~~~~~~~~~~~~~--d~~~~s~--~K~~g~~G-~G~l~~~-~~li~~l~~~~~g~~~~~~~~~~~~~~  310 (368)
                      ||+++|+|++|+.|.. .+....+.  |++++|+  +|.+|+.| +|+++.+ +++.+.+++....+....        +
T Consensus       149 ~~~~li~D~a~~~g~~-~~~~~~~~~~di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~~~~~~~~~~g~~~~--------~  219 (367)
T 3nyt_A          149 YGIPVIEDAAQSFGAS-YKGKRSCNLSTVACTSFFPSAPLGCYGDGGAIFTNDDELATAIRQIARHGQDRR--------Y  219 (367)
T ss_dssp             TTCCBEEECTTTTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEET--------T
T ss_pred             cCCEEEEECccccCCe-ECCeeccCCCCEEEEECCCCCcCCCcCceeEEEeCCHHHHHHHHHHHhcCCCcC--------c
Confidence            9999999999998765 22222222  9999996  89998855 7888885 556665554433322200        0


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          311 ADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       311 ~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      ......+.. ..+....+.....++     .++.+.++.+++.+++.+.|.++
T Consensus       220 ~~~~~g~~~-~~~~~~aa~~~~~l~-----~~~~~~~~~~~~~~~~~~~L~~~  266 (367)
T 3nyt_A          220 HHIRVGVNS-RLDTLQAAILLPKLE-----IFEEEIALRQKVAAEYDLSLKQV  266 (367)
T ss_dssp             EECSCCCBC-CCCHHHHHHHHHHHH-----THHHHHHHHHHHHHHHHHHHHHT
T ss_pred             eeeccCcCC-CccHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccC
Confidence            000001111 223322222222222     35667788888899999999876

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.92  E-value=4.6e-24  Score=202.31  Aligned_cols=263  Identities=13%  Similarity=0.024  Sum_probs=175.0

Q ss_pred             CeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC-----CCCcEEE-
Q 017640           67 KLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-----DSGEIVF-  134 (368)
Q Consensus        67 ~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-----~~~~v~~-  134 (368)
                      +++.|..+.      ..+..+.+.+++.+..... .+..   +..    .....++|++++++++..     ++++|++ 
T Consensus        29 ~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~-~~~~---Y~~----~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v  100 (401)
T 7aat_A           29 KKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKK-MDKE---YLP----IAGLADFTRASAELALGENSEAFKSGRYVTV  100 (401)
T ss_dssp             TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTT-CCCC---CCC----TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEE
T ss_pred             CceeeeeeeEECCCCCEechHHHHHHHHHhcccc-cccC---CCC----CCCCHHHHHHHHHHhcCCCccccccCceEEE
Confidence            345555544      3444567788777665421 1111   111    112347888888888654     1348877 


Q ss_pred             -eCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC--CCCCCCHHHHHHhcc---cC
Q 017640          135 -TKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDESPDLDKLKEMLS---RK  208 (368)
Q Consensus       135 -t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~l~---~~  208 (368)
                       |+|+++++.+++.++.. .+++||+|++++|+|.+..    ..++..|++++.++++  .++.+|++.+++.+.   ++
T Consensus       101 ~t~G~~~al~~~~~~l~~-~~~~gd~Vlv~~p~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~  175 (401)
T 7aat_A          101 QGISGTGSLRVGANFLQR-FFKFSRDVYLPKPSWGNHT----PIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEK  175 (401)
T ss_dssp             EEEHHHHHHHHHHHHHHH-HCTTCCEEEEEESCCTTHH----HHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTT
T ss_pred             ecCcchHHHHHHHHHHHH-hccCCCEEEEcCCCchhHH----HHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhCCCC
Confidence             99999999998876510 1488999999999998854    4455669999999985  368889997776664   57


Q ss_pred             ceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc-c-------cc--CCCCCccEEEecCcCcCCCC
Q 017640          209 TKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM-V-------VD--VQGLDADFLVASSHKMCGPT  275 (368)
Q Consensus       209 ~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~-~-------~~--~~~~~~d~~~~s~~K~~g~~  275 (368)
                      ++++++++++||||.+++   +++|+++|++||+++|+|++|..... .       +.  .......+++.|+||.||++
T Consensus       176 ~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~  255 (401)
T 7aat_A          176 SIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLY  255 (401)
T ss_dssp             CEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCG
T ss_pred             cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCcccccc
Confidence            899999999999999998   77889999999999999999873221 1       10  12235778999999999998


Q ss_pred             c--ceEEEE---ccc----ccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--H-H--HhC
Q 017640          276 G--IGFLFG---KSD----LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY--L-S--TIG  341 (368)
Q Consensus       276 G--~G~l~~---~~~----li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~--~-~--~~g  341 (368)
                      |  +|++++   +++    +++.++.....+                     ...++.....++..+++.  + .  ...
T Consensus       256 G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~  314 (401)
T 7aat_A          256 GERAGAFTVICRDAEEAKRVESQLKILIRPM---------------------YSNPPMNGARIASLILNTPELRKEWLVE  314 (401)
T ss_dssp             GGCEEEEEEECSSHHHHHHHHHHHHHHHHHH---------------------HSSCCHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             cCceEEEEEEeCCHHHHHHHHHHHHHHHHhc---------------------cCCCChHHHHHHHHHhCCHHHHHHHHHH
Confidence            8  899886   333    222222211100                     113333333333333321  0 0  112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Q 017640          342 MQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       342 ~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      ++.++++.+++++++.+.|.+.
T Consensus       315 ~~~~~~~~~~~r~~l~~~L~~~  336 (401)
T 7aat_A          315 VKGMADRIISMRTQLVSNLKKE  336 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            5677888889999999988775

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.92  E-value=4.4e-25  Score=209.54  Aligned_cols=282  Identities=13%  Similarity=0.107  Sum_probs=195.9

Q ss_pred             cchhhhhcCCCCcccccccCCCCeEEeccCCCCCCcHHHHHHHHHHHHH--hhccCCCCcchhhHHHHHHH-HHHHHHHH
Q 017640           45 VSLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEA--YNSNVHRGIHFLSAKATDEY-ELARKKVA  121 (368)
Q Consensus        45 ~~~~~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~r~~la  121 (368)
                      ..++..++++....       .+++.+..+... .++.+.+++.+.+..  ...++.. .+..+....+.. +..|+.++
T Consensus         9 ~~i~~~~~~~~~~~-------~~~i~~~~~~~~-~~~~v~~a~~~~~~~~~~~~y~~~-~~~~g~~~~~~~e~~ar~~la   79 (407)
T 2dkj_A            9 EALFELIALEEKRQ-------REGLELIASENF-VSKQVREAVGSVLTNKYAEGYPGA-RYYGGCEVIDRVESLAIERAK   79 (407)
T ss_dssp             HHHHHHHHHHHHHH-------HTSEECCTTCCC-CCHHHHHHHTSGGGGCCCCEETTE-ESSSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh-------hcceeeccCCCC-CCHHHHHHHHhhhhcCcccCCCcc-cccCCchHHHHHHHHHHHHHH
Confidence            34555555444332       345666555544 499999999888754  2223321 111122222233 34678999


Q ss_pred             HHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCC--EEEEEeCCC-CCCCCH
Q 017640          122 AFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGA--NLKFLNLND-DESPDL  198 (368)
Q Consensus       122 ~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~--~v~~v~~~~-~~~~d~  198 (368)
                      +++|.++. +|++++ +++|+..++.++    +++||+|++.+++|++...... .++..|.  .++.+++++ ++.+|+
T Consensus        80 ~~~g~~~~-~i~~~s-Gt~a~~~~~~~~----~~~gd~Vl~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~d~  152 (407)
T 2dkj_A           80 ALFGAAWA-NVQPHS-GSQANMAVYMAL----MEPGDTLMGMDLAAGGHLTHGS-RVNFSGKLYKVVSYGVRPDTELIDL  152 (407)
T ss_dssp             HHHTCSEE-ECCCSS-HHHHHHHHHHHH----CCTTCEEEEECGGGTCCGGGTC-TTSHHHHHSEEEEECCCTTTSSCCH
T ss_pred             HHhCCCcc-eEEecc-hHHHHHHHHHHh----cCCCCEEEEecccccCccchHH-HHHhcCceEEEEecCCCcccCccCH
Confidence            99998742 344455 567999999998    7899999999999988732111 1122244  455555443 678899


Q ss_pred             HHHHHhccc-CceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCC---CCccEEEecCcCcC-C
Q 017640          199 DKLKEMLSR-KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQG---LDADFLVASSHKMC-G  273 (368)
Q Consensus       199 ~~l~~~l~~-~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~---~~~d~~~~s~~K~~-g  273 (368)
                      ++|++++++ ++++|++++++||  ...|+++|.++|++||+++|+|++|+.|....+...   ...|++++|+||.+ |
T Consensus       153 ~~l~~~l~~~~~~~v~~~~p~~~--~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g  230 (407)
T 2dkj_A          153 EEVRRLALEHRPKVIVAGASAYP--RFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRG  230 (407)
T ss_dssp             HHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTTTCSEEEEESSGGGCC
T ss_pred             HHHHHHHhhcCCeEEEEeccccC--CCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccccccEEEEeccccCCC
Confidence            999999985 8899999888886  778999999999999999999999986543222110   13799999999965 4


Q ss_pred             CCcceEEEEc-ccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Q 017640          274 PTGIGFLFGK-SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKW  352 (368)
Q Consensus       274 ~~G~G~l~~~-~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l  352 (368)
                      +.| |+++++ +++++.+.+....                    +..++++...++++..+++.+...+++.+.++..++
T Consensus       231 ~~~-G~~~~~~~~~~~~l~~~~~~--------------------~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~  289 (407)
T 2dkj_A          231 PRG-GLILSNDPELGKRIDKLIFP--------------------GIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVEN  289 (407)
T ss_dssp             CSC-EEEEESCHHHHHHHHHHHTT--------------------TTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred             CCc-eEEEECCHHHHHHHHhhhcc--------------------cccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            665 999999 6887766543321                    223477787777888888887655688999999999


Q ss_pred             HHHHHHHHHhhcCC
Q 017640          353 IICSIIVIQERHNT  366 (368)
Q Consensus       353 ~~~l~~~l~~~~g~  366 (368)
                      .+++.+.|.+. |+
T Consensus       290 ~~~l~~~L~~~-g~  302 (407)
T 2dkj_A          290 AKRLAEELARR-GY  302 (407)
T ss_dssp             HHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHhC-Cc
Confidence            99999999876 54

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.92  E-value=6.6e-24  Score=200.81  Aligned_cols=252  Identities=14%  Similarity=0.107  Sum_probs=183.3

Q ss_pred             eEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHH
Q 017640           68 LVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEA  141 (368)
Q Consensus        68 ~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a  141 (368)
                      ..|+|.+.      .++.++.+.+++.+.+...... . ..+     ..+..+++++.++++++.+.+ +|++|+|+++|
T Consensus        45 ~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~-~-~~~-----~~~~~~~l~~~la~~~~~~~~-~v~~~~gg~~a  116 (395)
T 1vef_A           45 NEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAM-P-QTL-----PTPMRGEFYRTLTAILPPELN-RVFPVNSGTEA  116 (395)
T ss_dssp             CEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCC-C-TTS-----CCHHHHHHHHHHHHTSCTTEE-EEEEESSHHHH
T ss_pred             CEEEEccCccccccCCCCCHHHHHHHHHHHHhCCCC-c-ccc-----CCHHHHHHHHHHHHhcCCCcC-EEEEcCcHHHH
Confidence            34566532      3568999999999988764211 1 111     245667899999999987554 89999999999


Q ss_pred             HHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCE------------EEEEeCCCCCCCCHHHHHHhcccCc
Q 017640          142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGAN------------LKFLNLNDDESPDLDKLKEMLSRKT  209 (368)
Q Consensus       142 ~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~------------v~~v~~~~~~~~d~~~l~~~l~~~~  209 (368)
                      +..++.++.  .+.+|+.|++.++.|++......   ...|.+            +..++.     .|+++|++++++++
T Consensus       117 ~~~al~~~~--~~~~~~~vi~~~~~y~~~~~~~~---~~~g~~~~~~~~~p~~~~~~~~~~-----~d~~~l~~~i~~~~  186 (395)
T 1vef_A          117 NEAALKFAR--AHTGRKKFVAAMRGFSGRTMGSL---SVTWEPKYREPFLPLVEPVEFIPY-----NDVEALKRAVDEET  186 (395)
T ss_dssp             HHHHHHHHH--HHHSCCEEEEETTCCCCSSHHHH---HTCCCHHHHGGGCSCSSCEEEECT-----TCHHHHHHHCCTTE
T ss_pred             HHHHHHHHH--HHhCCCeEEEEcCCcCCCchhhh---hhcCCcccccccCCCCCCeeEeCC-----CcHHHHHHHhccCE
Confidence            999998751  02578899999999887543222   223443            344443     38999999999889


Q ss_pred             eEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEEecCcCcCCC-CcceE
Q 017640          210 KLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGP-TGIGF  279 (368)
Q Consensus       210 ~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~g~-~G~G~  279 (368)
                      ++|++++++||||.+.|    +++|.++|++||+++|+|++|+ ++..    +++.....+|++  |+||.+++ .++|+
T Consensus       187 ~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~g~~~G~  264 (395)
T 1vef_A          187 AAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDIL--TLAKALGGGVPLGV  264 (395)
T ss_dssp             EEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGTTSSCEE
T ss_pred             EEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCCEE--EEcccccCCCceEE
Confidence            99999999999999988    9999999999999999999998 3221    122223357766  67897764 34999


Q ss_pred             EEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 017640          280 LFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIV  359 (368)
Q Consensus       280 l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~  359 (368)
                      +++++++++.+.+...+                     ...+.+..+.+++..+++.+.+   +.+.++..++.+++.+.
T Consensus       265 ~~~~~~~~~~l~~~~~~---------------------~~~~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~l~~~  320 (395)
T 1vef_A          265 AVMREEVARSMPKGGHG---------------------TTFGGNPLAMAAGVAAIRYLER---TRLWERAAELGPWFMEK  320 (395)
T ss_dssp             EEEEHHHHHTSCTTSSC---------------------CSSTTCHHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHH
T ss_pred             EEehHHHHhhhccCCcC---------------------CCcCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHH
Confidence            99999888777652110                     1125677888888888887765   35678888889999988


Q ss_pred             HHhh
Q 017640          360 IQER  363 (368)
Q Consensus       360 l~~~  363 (368)
                      |.+.
T Consensus       321 l~~~  324 (395)
T 1vef_A          321 LRAI  324 (395)
T ss_dssp             HHTS
T ss_pred             HHHh
Confidence            8765

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.92  E-value=2.6e-24  Score=204.56  Aligned_cols=174  Identities=20%  Similarity=0.222  Sum_probs=148.3

Q ss_pred             HHHHHHHHHHHcCCCCCCcEEE--eCCHHHHHHHHHHHccCCCCCCCCEEEEcC-CCCcccHHHH-------HHHHHHcC
Q 017640          113 YELARKKVAAFINASDSGEIVF--TKNATEAINLVAYSWGLSNLKSGDEVILTV-AEHHSAIVPW-------QLVAQKTG  182 (368)
Q Consensus       113 ~~~~r~~la~~~~~~~~~~v~~--t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~-~~~~s~~~~~-------~~~~~~~g  182 (368)
                      .+++++.+|+++|.+.  .+++  ++|+++|+..++.++    +++||+|++.+ +.|.+....+       ...++..|
T Consensus        75 ~~~Le~~lA~l~g~e~--alv~p~~~sGt~Ai~~al~al----l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G  148 (427)
T 3i16_A           75 RDSLDAVYARVFNTES--ALVRPHFVNGTHALGAALFGN----LRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFG  148 (427)
T ss_dssp             HHHHHHHHHHHHTCSE--EEEETTCCSHHHHHHHHHHHH----CCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGT
T ss_pred             HHHHHHHHHHHhCCcc--eEEeCCCccHHHHHHHHHHHH----hCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcC
Confidence            6678999999999973  4554  788899999999998    89999999998 8888866433       13345679


Q ss_pred             CEEEEEeCCCCCCCCHHHHHHhcc--cCceEEEEcc----cccccccccCHHHHHHHHHh--cCCEEEEecCCcCCcccc
Q 017640          183 ANLKFLNLNDDESPDLDKLKEMLS--RKTKLVVIHH----ISNMLASILPIEEIVHWSHD--VGAKVLVDACQSVPHMVV  254 (368)
Q Consensus       183 ~~v~~v~~~~~~~~d~~~l~~~l~--~~~~~v~~~~----~~n~tG~~~~l~~i~~l~~~--~g~~li~D~a~~~~~~~~  254 (368)
                      ++++.++.++++.+|+++|+++++  +++++|++++    ++||||.+.|+++|.++|++  ||+++++|++|+.+....
T Consensus       149 ~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~~~~~  228 (427)
T 3i16_A          149 INYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTK  228 (427)
T ss_dssp             CEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTTSSSS
T ss_pred             CEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCccccccC
Confidence            999999998889999999999998  7899999999    99999999999999999999  999999999999776333


Q ss_pred             cCCCCCccEEEecCcCcCCCCc---ceEEEEcccccccCCC
Q 017640          255 DVQGLDADFLVASSHKMCGPTG---IGFLFGKSDLLSAMPP  292 (368)
Q Consensus       255 ~~~~~~~d~~~~s~~K~~g~~G---~G~l~~~~~li~~l~~  292 (368)
                      +....+.|++++|+||.+|++|   +|++++++++++.++.
T Consensus       229 ~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~  269 (427)
T 3i16_A          229 EPTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSY  269 (427)
T ss_dssp             CGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHH
T ss_pred             CccccCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHH
Confidence            3334578999999999888743   6999999999987765

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.92  E-value=8.6e-25  Score=206.99  Aligned_cols=168  Identities=19%  Similarity=0.176  Sum_probs=143.0

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      .+..+++|+.+++++|.+   ++++++|+++|+..++. +    +++||+|+++.++|++++..+...++..|+++++++
T Consensus        54 ~~~~~~lr~~la~~~g~~---~~i~~~sGt~a~~~al~-~----~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~  125 (393)
T 1n8p_A           54 NPNRENLERAVAALENAQ---YGLAFSSGSATTATILQ-S----LPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTN  125 (393)
T ss_dssp             CHHHHHHHHHHHHHTTCS---EEEEESCHHHHHHHHHH-T----SCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEES
T ss_pred             ChhHHHHHHHHHHHhCCC---cEEEECChHHHHHHHHH-H----cCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeC
Confidence            455778999999999986   45555566999999999 7    789999999999999877666556677799999998


Q ss_pred             CCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhc----CCEEEEecCCcCCcccccCCCCCccEEE
Q 017640          190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDV----GAKVLVDACQSVPHMVVDVQGLDADFLV  265 (368)
Q Consensus       190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~----g~~li~D~a~~~~~~~~~~~~~~~d~~~  265 (368)
                      .+     | ++|++++++++++|++++++||||.++|+++|.++|++|    |+++|+|++|+.+... +...+++|+++
T Consensus       126 ~~-----d-~~l~~~i~~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~-~~~~~~~di~~  198 (393)
T 1n8p_A          126 DL-----L-NDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYIS-NPLNFGADIVV  198 (393)
T ss_dssp             SH-----H-HHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-CGGGGTCSEEE
T ss_pred             CC-----h-HHHHHhcccCceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccC-CHHHcCCeEEE
Confidence            76     7 899999998999999999999999999999999999999    9999999999966542 33345799999


Q ss_pred             ecCcCcCCCCc--c-eEEEEc-ccccccCCC
Q 017640          266 ASSHKMCGPTG--I-GFLFGK-SDLLSAMPP  292 (368)
Q Consensus       266 ~s~~K~~g~~G--~-G~l~~~-~~li~~l~~  292 (368)
                      .|+||++|++|  + |+++++ +++++.+.+
T Consensus       199 ~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~  229 (393)
T 1n8p_A          199 HSATKYINGHSDVVLGVLATNNKPLYERLQF  229 (393)
T ss_dssp             EETTTTTTCSSCCCCEEEEESCHHHHHHHHH
T ss_pred             EECcccccCCCCceeEEEEeCCHHHHHHHHH
Confidence            99999999988  6 999985 677766553

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.92  E-value=3e-24  Score=203.01  Aligned_cols=267  Identities=12%  Similarity=0.017  Sum_probs=185.6

Q ss_pred             CCeEEeccCCC------CCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc-CC--CCCCcEEE--
Q 017640           66 KKLVYLDNAAT------SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI-NA--SDSGEIVF--  134 (368)
Q Consensus        66 ~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~-~~--~~~~~v~~--  134 (368)
                      ++++.|..+.+      .++++.+.+++.+.+...  ..+  .+..    .....++|+++++++ +.  ++ ++|++  
T Consensus        26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~--~y~~----~~g~~~lr~~la~~~~~~~~~~-~~v~~~~   96 (394)
T 2ay1_A           26 QGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETE--TTK--TYAG----LSGEPEFQKAMGELILGDGLKS-ETTATLA   96 (394)
T ss_dssp             TTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHC--CCC--CCCC----SSCCHHHHHHHHHHHHGGGCCG-GGEEEEE
T ss_pred             ccccccccceeeCCCCCccCcHHHHHHHHHhcCCc--ccC--CCCC----CCCcHHHHHHHHHHHhCCCCCc-ccEEEEe
Confidence            45677777763      256789999998876541  110  1100    122347888899887 54  33 48998  


Q ss_pred             eCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC--CCCCCCHHHHHHhccc---Cc
Q 017640          135 TKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDESPDLDKLKEMLSR---KT  209 (368)
Q Consensus       135 t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~l~~---~~  209 (368)
                      |+|+++|+..++.++..  +.+||+|++.+|+|++..    ..++..|++++.++.+  .++.+|++++++++++   ++
T Consensus        97 ~~g~~~a~~~~~~~~~~--~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~  170 (394)
T 2ay1_A           97 TVGGTGALRQALELARM--ANPDLRVFVSDPTWPNHV----SIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGD  170 (394)
T ss_dssp             EEHHHHHHHHHHHHHHH--HCTTCCEEEEESCCHHHH----HHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCTTC
T ss_pred             cCCchhHHHHHHHHHHh--cCCCCEEEEcCCCChhHH----HHHHHcCCceEEEecccccCCccCHHHHHHHHHhCCCCC
Confidence            99999999999987621  248999999999988854    3445569999999986  5677899999999875   36


Q ss_pred             eEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc-------ccc-CCCCC-ccEEEecCcCcCCCCc-
Q 017640          210 KLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM-------VVD-VQGLD-ADFLVASSHKMCGPTG-  276 (368)
Q Consensus       210 ~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~-------~~~-~~~~~-~d~~~~s~~K~~g~~G-  276 (368)
                      +++++++++||||.++|   +++|.++|++||+++|+|++|+....       ++. +...+ .+++++|+||.+|++| 
T Consensus       171 ~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~  250 (394)
T 2ay1_A          171 MVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRE  250 (394)
T ss_dssp             EEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGG
T ss_pred             EEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcCC
Confidence            78888999999999998   56889999999999999999985322       221 22222 4578889999999888 


Q ss_pred             -ceEEEE---cccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-----HhCHHHHHH
Q 017640          277 -IGFLFG---KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS-----TIGMQKIHA  347 (368)
Q Consensus       277 -~G~l~~---~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~-----~~g~~~i~~  347 (368)
                       +|++++   ++++++.+.......                 .+...++++.....++..+++...     ....+.+++
T Consensus       251 riG~~~~~~~~~~~~~~l~~~~~~~-----------------~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~  313 (394)
T 2ay1_A          251 RTGCLLALCADAATRELAQGAMAFL-----------------NRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRS  313 (394)
T ss_dssp             CEEEEEEECSSHHHHHHHHHHHHHH-----------------HHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred             ccceEEEEeCCHHHHHHHHHHHHHH-----------------HhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence             699998   565443322111000                 011112345556666666665431     124678888


Q ss_pred             HHHHHHHHHHHHHHhhc
Q 017640          348 YEVKWIICSIIVIQERH  364 (368)
Q Consensus       348 ~~~~l~~~l~~~l~~~~  364 (368)
                      +.+++.+++.+.|.+..
T Consensus       314 ~~~~~~~~l~~~L~~~~  330 (394)
T 2ay1_A          314 GMLRLREQLAGELRDLS  330 (394)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            88999999998888763

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.92  E-value=1.8e-24  Score=205.89  Aligned_cols=263  Identities=14%  Similarity=0.057  Sum_probs=185.2

Q ss_pred             CCeEEeccCCC------CCCcHHHHHHHHH-HHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCC------CCCCcE
Q 017640           66 KKLVYLDNAAT------SQKPIAVLKALQN-YYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINA------SDSGEI  132 (368)
Q Consensus        66 ~~~i~l~~~~~------~~~~~~v~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~------~~~~~v  132 (368)
                      ++++.|..+.+      .++++.+.+++.+ .+...  ..+  .+.    ......++|+.++++++.      ++ ++|
T Consensus        29 ~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~--~~~--~y~----~~~g~~~lr~~ia~~~~~~~~~~~~~-~~i   99 (412)
T 1yaa_A           29 ATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSS--YNH--EYL----GITGLPSLTSNAAKIIFGTQSDALQE-DRV   99 (412)
T ss_dssp             SSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTT--CCC--CCC----CTTCCHHHHHHHHHHHHCTTCHHHHT-TCE
T ss_pred             CCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcc--ccc--CCC----CCCCcHHHHHHHHHHHhcCCCCCCCc-ceE
Confidence            45566666543      3577899999888 65411  111  110    112244788888888832      23 489


Q ss_pred             EE--eCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeC-CC-CCCCCHHHHHHhcccC
Q 017640          133 VF--TKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL-ND-DESPDLDKLKEMLSRK  208 (368)
Q Consensus       133 ~~--t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~-~~-~~~~d~~~l~~~l~~~  208 (368)
                      ++  |+|+++|+.+++..+.  .+.+||+|++.+|+|++..    ..++..|++++.++. ++ ++.+|+++|+++++++
T Consensus       100 ~~~~t~g~~~a~~~~~~~~~--~~~~gd~Vl~~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~  173 (412)
T 1yaa_A          100 ISVQSLSGTGALHISAKFFS--KFFPDKLVYLSKPTWANHM----AIFENQGLKTATYPYWANETKSLDLNGFLNAIQKA  173 (412)
T ss_dssp             EEEEEEHHHHHHHHHHHHHH--HHCTTCCEEEEESCCTTHH----HHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHS
T ss_pred             EEEeccchHhHHHHHHHHHH--HhCCCCEEEEeCCCCccHH----HHHHHcCceEEEEeeecCCCCccCHHHHHHHHHhC
Confidence            99  9999999999843321  1468999999999999844    445567999999998 43 6778999999998753


Q ss_pred             ---ceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCc--------ccc-cCCCC-C---ccEEEecCc
Q 017640          209 ---TKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH--------MVV-DVQGL-D---ADFLVASSH  269 (368)
Q Consensus       209 ---~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~--------~~~-~~~~~-~---~d~~~~s~~  269 (368)
                         +.++++++++||||.++|   +++|.++|++||+++|+|++|....        .++ ++... .   .+++++|+|
T Consensus       174 ~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s  253 (412)
T 1yaa_A          174 PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFA  253 (412)
T ss_dssp             CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECT
T ss_pred             CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccC
Confidence               456666999999999998   5678999999999999999996321        122 22222 2   568899999


Q ss_pred             CcCCCCc--ceEEE--E-----ccc----ccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 017640          270 KMCGPTG--IGFLF--G-----KSD----LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY  336 (368)
Q Consensus       270 K~~g~~G--~G~l~--~-----~~~----li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~  336 (368)
                      |.+|++|  +|+++  +     +++    +++.+....                     +....+++.....++..+++.
T Consensus       254 K~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~---------------------~~~~~~~~~~~~~a~~~~l~~  312 (412)
T 1yaa_A          254 KNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKII---------------------RSEVSNPPAYGAKIVAKLLET  312 (412)
T ss_dssp             TTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHH---------------------HTTTSSCCHHHHHHHHHHHHS
T ss_pred             CCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHH---------------------hhccCCCChHHHHHHHHHhCC
Confidence            9999988  79998  6     555    555444311                     111235577777777777765


Q ss_pred             HH-----HhCHHHHHHHHHHHHHHHHHHHHhhc
Q 017640          337 LS-----TIGMQKIHAYEVKWIICSIIVIQERH  364 (368)
Q Consensus       337 ~~-----~~g~~~i~~~~~~l~~~l~~~l~~~~  364 (368)
                      ..     ...++.++++.+++.+++.+.|.+..
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  345 (412)
T 1yaa_A          313 PELTEQWHKDMVTMSSRITKMRHALRDHLVKLG  345 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            42     12478888999999999999998764

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.92  E-value=3.4e-25  Score=211.02  Aligned_cols=268  Identities=12%  Similarity=0.108  Sum_probs=166.9

Q ss_pred             CCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc------CCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI------NASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~------~~~~~~~v~~t~g~t  139 (368)
                      +++++|.++.+... +.+.+++.+.+.....++....+..++.......++|+++++++      ++++ ++|++|+|++
T Consensus        31 ~~~i~l~~g~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~t  108 (417)
T 3g7q_A           31 PGAIMLGGGNPAHI-PAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEP-QNIALTNGSQ  108 (417)
T ss_dssp             -CCEECSCCCCCCC-HHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCG-GGEEEESCHH
T ss_pred             CCceEecCcCCCCC-ChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCc-ccEEEeCCcH
Confidence            57899999876653 33334443333332211110000111212233457777788776      3444 4999999999


Q ss_pred             HHHHHHHHHccCCCCCCCC-----EEEEc-CCCCcccHHHHHHHHH--HcCCEEEEEeCCC-CCCCCHHHHHHhcccCce
Q 017640          140 EAINLVAYSWGLSNLKSGD-----EVILT-VAEHHSAIVPWQLVAQ--KTGANLKFLNLND-DESPDLDKLKEMLSRKTK  210 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd-----~vl~~-~~~~~s~~~~~~~~~~--~~g~~v~~v~~~~-~~~~d~~~l~~~l~~~~~  210 (368)
                      +|+.+++.++    +++||     +|+++ +|+|++..........  ..+..+..++.+. ++.+|+++|+  +.++++
T Consensus       109 ~al~~~~~~l----~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~  182 (417)
T 3g7q_A          109 SAFFYLFNLF----AGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLH--IGEETG  182 (417)
T ss_dssp             HHHHHHHHHH----SBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGEEEEECCGGGCC--CCTTEE
T ss_pred             HHHHHHHHHH----cCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcccccccCHHHhc--cccCce
Confidence            9999999998    77877     89997 9988775432221101  1233444444331 3567899888  778899


Q ss_pred             EEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCccc-----ccCCCCCccEEEecCcCcCCCCc--ceEE
Q 017640          211 LVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV-----VDVQGLDADFLVASSHKMCGPTG--IGFL  280 (368)
Q Consensus       211 ~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~~-----~~~~~~~~d~~~~s~~K~~g~~G--~G~l  280 (368)
                      +|++++++||||.++|   +++|.++|++||+++|+|++|+.....     ......+.+++++|+|| ++++|  +|++
T Consensus       183 ~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK-~~~~G~r~G~~  261 (417)
T 3g7q_A          183 MICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEARPLWNPNIILCMSLSK-LGLPGSRCGII  261 (417)
T ss_dssp             EEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESGG-GTCTTSCCEEE
T ss_pred             EEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccccccccCCCCCEEEEEechh-ccCCCcceEEE
Confidence            9999999999999999   889999999999999999999853221     11122467899999999 57666  9999


Q ss_pred             EEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh-CHH-HHHHHHHHHHHHHHH
Q 017640          281 FGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQ-KIHAYEVKWIICSII  358 (368)
Q Consensus       281 ~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~-g~~-~i~~~~~~l~~~l~~  358 (368)
                      +.++++++.+......+                     ..+.+.....++...++..... ... .++++..+..+.+.+
T Consensus       262 ~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (417)
T 3g7q_A          262 IANDKTITAIANMNGII---------------------SLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIA  320 (417)
T ss_dssp             ECCHHHHHHHHHHHHHH---------------------CCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             EeCHHHHHHHHHhhcce---------------------eeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            99998887766433211                     1133444444444444311100 011 255666677777777


Q ss_pred             HHHhh
Q 017640          359 VIQER  363 (368)
Q Consensus       359 ~l~~~  363 (368)
                      .|.+.
T Consensus       321 ~l~~~  325 (417)
T 3g7q_A          321 IIRRY  325 (417)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            77653

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.92  E-value=5e-23  Score=193.27  Aligned_cols=254  Identities=15%  Similarity=0.125  Sum_probs=178.0

Q ss_pred             CeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHH
Q 017640           67 KLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE  140 (368)
Q Consensus        67 ~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~  140 (368)
                      +..|+|.+.      .+++++.+.+++.+.+.... ++.. .+.     .....++++++++++|.+  +++++|+|+++
T Consensus        27 g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~-~~~~-~y~-----~~~~~~l~~~la~~~g~~--~~v~~~~g~t~   97 (375)
T 2eh6_A           27 GKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLL-HVSN-LYE-----NPWQEELAHKLVKHFWTE--GKVFFANSGTE   97 (375)
T ss_dssp             CCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCS-CCCT-TBC-----CHHHHHHHHHHHHTSSSC--EEEEEESSHHH
T ss_pred             CCEEEEcCCcccccccCCCCHHHHHHHHHHHHhcc-ccCc-ccC-----CHHHHHHHHHHHhhcCCC--CeEEEeCchHH
Confidence            335666653      22378999999999887642 2111 111     234568999999999983  48999999999


Q ss_pred             HHHHHHHHccCCCC---CCC-CEEEEcCCCCcccHHHHHHHHHH----cCCE-----EEEEeCCCCCCCCHHHHHHhccc
Q 017640          141 AINLVAYSWGLSNL---KSG-DEVILTVAEHHSAIVPWQLVAQK----TGAN-----LKFLNLNDDESPDLDKLKEMLSR  207 (368)
Q Consensus       141 a~~~~~~~~~~~~~---~~g-d~vl~~~~~~~s~~~~~~~~~~~----~g~~-----v~~v~~~~~~~~d~~~l~~~l~~  207 (368)
                      |+..++.++. ...   ++| |+|++.+++|++...........    .+..     +..++.     .|+++|++++++
T Consensus        98 a~~~~~~~~~-~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~  171 (375)
T 2eh6_A           98 SVEAAIKLAR-KYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL-----NDIDSVYKLLDE  171 (375)
T ss_dssp             HHHHHHHHHH-HHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT-----TCHHHHHTTCCT
T ss_pred             HHHHHHHHHH-HHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC-----chHHHHHHHhcC
Confidence            9999987520 003   678 99999999988865444332100    0111     444443     389999999998


Q ss_pred             CceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCccc--ccCCCCC--ccEEEecCcCcCC-CCcc
Q 017640          208 KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV--VDVQGLD--ADFLVASSHKMCG-PTGI  277 (368)
Q Consensus       208 ~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~~--~~~~~~~--~d~~~~s~~K~~g-~~G~  277 (368)
                      ++++|++++++||||.+.|    +++|.++|++||+++|+|++|+ ++...  ++....+  +|++++  +|.++ +.++
T Consensus       172 ~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~s~--SK~~~~g~~~  249 (375)
T 2eh6_A          172 ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIAL--AKGLGGGVPI  249 (375)
T ss_dssp             TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGGTTSCC
T ss_pred             CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEEEE--cccccCCCCe
Confidence            9999999999999999988    9999999999999999999999 54432  2233334  787754  49665 3458


Q ss_pred             eEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 017640          278 GFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSI  357 (368)
Q Consensus       278 G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~  357 (368)
                      |++++++++++.+++...+.                    ..++ +.....++..+++.+.     .+.++.+++.+++.
T Consensus       250 G~~~~~~~~~~~~~~~~~~~--------------------~~~~-~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~l~  303 (375)
T 2eh6_A          250 GAILAREEVAQSFTPGSHGS--------------------TFGG-NPLACRAGTVVVDEVE-----KLLPHVREVGNYFK  303 (375)
T ss_dssp             EEEEEEHHHHTTCCTTSCCC--------------------SSTT-CHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred             EEEEEcHHHHhhhcCCCCCC--------------------CCCC-CHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence            99999999888777532211                    1123 4555555556666554     66788888899999


Q ss_pred             HHHHhh
Q 017640          358 IVIQER  363 (368)
Q Consensus       358 ~~l~~~  363 (368)
                      +.|.++
T Consensus       304 ~~L~~~  309 (375)
T 2eh6_A          304 EKLKEL  309 (375)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            888775

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.92  E-value=6.4e-24  Score=201.62  Aligned_cols=170  Identities=22%  Similarity=0.255  Sum_probs=143.5

Q ss_pred             HHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeC
Q 017640          111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL  190 (368)
Q Consensus       111 ~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~  190 (368)
                      +...++++.+++++|.+  +.|++++| ++|+..++. +    +++||+|+++++.|++++..+...++..|+++++++.
T Consensus        67 p~~~~l~~~la~~~g~~--~~i~~~sG-~~ai~~~~~-l----~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~  138 (403)
T 3cog_A           67 PTRNCLEKAVAALDGAK--YCLAFASG-LAATVTITH-L----LKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDC  138 (403)
T ss_dssp             HHHHHHHHHHHHHHTCS--EEEEESCH-HHHHHHHHT-T----SCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECT
T ss_pred             chHHHHHHHHHHHhCCC--cEEEECCH-HHHHHHHHH-H----hCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECC
Confidence            44668999999999986  35666655 689999988 7    7899999999999999887777777788999999998


Q ss_pred             CCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcC-CEEEEecCCcCCcccccCCCCCccEEEecCc
Q 017640          191 NDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVG-AKVLVDACQSVPHMVVDVQGLDADFLVASSH  269 (368)
Q Consensus       191 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g-~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~  269 (368)
                      +     |+++|++++++++++|++++++||||.++|+++|.++|++|| +++|+|++|+.+.....+ ..+.|+++.|++
T Consensus       139 ~-----d~~~l~~~i~~~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~~~-~~~~div~~S~s  212 (403)
T 3cog_A          139 S-----KIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPL-ALGADISMYSAT  212 (403)
T ss_dssp             T-----SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCCTT-TTTCSEEEEETT
T ss_pred             C-----CHHHHHHhcCcCCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccCCcc-ccCCeEEEEcCh
Confidence            6     899999999999999999999999999999999999999999 999999999977532222 257999999999


Q ss_pred             CcCCCCc---ceEEEEc-ccccccCCCcc
Q 017640          270 KMCGPTG---IGFLFGK-SDLLSAMPPFL  294 (368)
Q Consensus       270 K~~g~~G---~G~l~~~-~~li~~l~~~~  294 (368)
                      |++|.+|   +|+++++ +++++.+++..
T Consensus       213 K~~~g~~~~~~G~v~~~~~~l~~~l~~~~  241 (403)
T 3cog_A          213 KYMNGHSDVVMGLVSVNCESLHNRLRFLQ  241 (403)
T ss_dssp             TTTTCSSCCCCEEEEECCHHHHHHHHHHH
T ss_pred             hhccCCCCCeEEEEEECcHHHHHHHHHHH
Confidence            9877544   5999995 67777666443

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=99.92  E-value=1.1e-23  Score=205.20  Aligned_cols=251  Identities=15%  Similarity=0.180  Sum_probs=175.5

Q ss_pred             cHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc-----CCC-CCCcEEEeCCHHHHHHHHHHHccCCC
Q 017640           80 PIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI-----NAS-DSGEIVFTKNATEAINLVAYSWGLSN  153 (368)
Q Consensus        80 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~-----~~~-~~~~v~~t~g~t~a~~~~~~~~~~~~  153 (368)
                      |..+.+++.+.+....... .+.+..    .....++|+++++++     |.+ .+++|++|+|+++++.+++.++    
T Consensus       103 P~~~~~~~~~~l~~~~~~~-~~~Y~~----~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l----  173 (498)
T 3ihj_A          103 PEDAKKRARRILQACGGNS-LGSYSA----SQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKIL----  173 (498)
T ss_dssp             CHHHHHHHHHHHHHC---------------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHH----
T ss_pred             CHHHHHHHHHHHHhccCCC-CCCCCC----CCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHH----
Confidence            5556666666665532100 011111    122234555555554     353 2359999999999999999998    


Q ss_pred             CCCCC----EEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC--CCCCHHHHHHhccc-----CceEEEEcccccccc
Q 017640          154 LKSGD----EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSR-----KTKLVVIHHISNMLA  222 (368)
Q Consensus       154 ~~~gd----~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~l~~-----~~~~v~~~~~~n~tG  222 (368)
                      +++||    .|+++.|+|++.    ...++..|++++.++++++  +.+|+++|++++++     ++++|++++++||||
T Consensus       174 ~~~gd~~~d~Vlv~~p~y~~~----~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG  249 (498)
T 3ihj_A          174 VSGGGKSRTGVMIPIPQYPLY----SAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTG  249 (498)
T ss_dssp             CCCCGGGSEEEEEEESCCTHH----HHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTC
T ss_pred             cCCCCCCCCEEEEeCCCchhH----HHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCC
Confidence            77765    999999999874    4445567999999998854  68899999999976     589999999999999


Q ss_pred             cccC---HHHHHHHHHhcCCEEEEecCCcCCccc-----ccCCC-----------CCccEEEecCcCcC-CCCc--ceEE
Q 017640          223 SILP---IEEIVHWSHDVGAKVLVDACQSVPHMV-----VDVQG-----------LDADFLVASSHKMC-GPTG--IGFL  280 (368)
Q Consensus       223 ~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~~-----~~~~~-----------~~~d~~~~s~~K~~-g~~G--~G~l  280 (368)
                      .+++   +++|+++|++||+++|+|++|+.....     .++..           ....++++|+||.| |.+|  +||+
T Consensus       250 ~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~  329 (498)
T 3ihj_A          250 QVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYM  329 (498)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEE
T ss_pred             CcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEE
Confidence            9999   677999999999999999999853321     11110           01236788999987 7677  8999


Q ss_pred             E---EcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-----------HHHHhCHHHHH
Q 017640          281 F---GKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAID-----------YLSTIGMQKIH  346 (368)
Q Consensus       281 ~---~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~-----------~~~~~g~~~i~  346 (368)
                      +   .++++++.+.....                      ...+++.....++..+++           +...  .+.++
T Consensus       330 ~~~~~~~~l~~~l~~~~~----------------------~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~--~~~~~  385 (498)
T 3ihj_A          330 EVINLHPEIKGQLVKLLS----------------------VRLCPPVSGQAAMDIVVNPPVAGEESFEQFSRE--KESVL  385 (498)
T ss_dssp             EEESCCHHHHHHHHHHHH----------------------HSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHH--HHHHH
T ss_pred             EEecCCHHHHHHHHHHHh----------------------ccCCCCHHHHHHHHHHhcCCccCcccHHHHHHH--HHHHH
Confidence            8   47777766553321                      012567777777776663           2222  46778


Q ss_pred             HHHHHHHHHHHHHHHhhcCCC
Q 017640          347 AYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       347 ~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      ++..+.++++.+.|.+++|++
T Consensus       386 ~~l~~~~~~l~~~L~~~~g~~  406 (498)
T 3ihj_A          386 GNLAKKAKLTEDLFNQVPGIH  406 (498)
T ss_dssp             HHHHHHHHHHHHHHHTSTTEE
T ss_pred             HHHHHHHHHHHHHHhcCCCcE
Confidence            888999999999998876654

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.91  E-value=1.2e-23  Score=202.49  Aligned_cols=226  Identities=14%  Similarity=0.075  Sum_probs=164.3

Q ss_pred             HHHHHHHHHHHc-CCCC----CCcEEE--eCCHHHHHHHHH--HHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCC
Q 017640          113 YELARKKVAAFI-NASD----SGEIVF--TKNATEAINLVA--YSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGA  183 (368)
Q Consensus       113 ~~~~r~~la~~~-~~~~----~~~v~~--t~g~t~a~~~~~--~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~  183 (368)
                      ..++|+++++++ |.+.    +++|++  |+|+++|+.+++  .++    +.+||+|++++|+|++....+...++..|+
T Consensus        96 ~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~----~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~  171 (448)
T 3meb_A           96 FPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHL----WMPKAEFYMPSTTWPNHYGIYDKVFNKLKV  171 (448)
T ss_dssp             CHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHH----HCTTCCEEEESSCCTHHHHHHHHHHCTTTS
T ss_pred             hHHHHHHHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHHHHHH----hCCCCEEEECCCCCHhHHHHHHhhHHhCCC
Confidence            447899999987 7762    348999  999999998843  444    679999999999998865444322226799


Q ss_pred             EEEEEeC-CCC--CCCCHHHHHHhccc---CceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCc-cc
Q 017640          184 NLKFLNL-NDD--ESPDLDKLKEMLSR---KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH-MV  253 (368)
Q Consensus       184 ~v~~v~~-~~~--~~~d~~~l~~~l~~---~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~-~~  253 (368)
                      +++.++. +++  +.+|+++|++++++   +++++++++++||||.+++   +++|+++|++||+++|+|++|.... ..
T Consensus       172 ~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~  251 (448)
T 3meb_A          172 PYKEYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGS  251 (448)
T ss_dssp             CCEEECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSC
T ss_pred             eEEEEeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCC
Confidence            9999998 554  88999999999974   5788899999999999999   5569999999999999999987322 11


Q ss_pred             c-----cC----CCCCccEEEecCcCcCCCCc--ceEE--EE--------c-c----cccccCCCcccCCcceeecccCC
Q 017640          254 V-----DV----QGLDADFLVASSHKMCGPTG--IGFL--FG--------K-S----DLLSAMPPFLGGGEMISDVFLDH  307 (368)
Q Consensus       254 ~-----~~----~~~~~d~~~~s~~K~~g~~G--~G~l--~~--------~-~----~li~~l~~~~~g~~~~~~~~~~~  307 (368)
                      .     .+    ......+++.|+||.||++|  +|++  ++        + +    ++++.+....             
T Consensus       252 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~-------------  318 (448)
T 3meb_A          252 FEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQI-------------  318 (448)
T ss_dssp             HHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHH-------------
T ss_pred             cccCchhHHHHhhcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHH-------------
Confidence            1     01    11235578999999999888  8998  66        4 3    4444333211             


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH---H--hCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          308 STFADPPSRFEAGTPAIGEAIGLGAAIDYLS---T--IGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       308 ~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~---~--~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                              +....+++.....++..+++...   .  ..++.++++..++++++.+.|.++
T Consensus       319 --------~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  371 (448)
T 3meb_A          319 --------RKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKR  371 (448)
T ss_dssp             --------HTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             --------hcccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                    11122556666666666654321   1  136788889999999999999876

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.91  E-value=1.2e-23  Score=200.59  Aligned_cols=267  Identities=15%  Similarity=0.111  Sum_probs=183.0

Q ss_pred             CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCC
Q 017640           76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLK  155 (368)
Q Consensus        76 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~  155 (368)
                      ..++++.+.+++.+.+....... .+ +.  .+..+..+++++.+++++|.+   ++++++|+|+|+..++.++   .++
T Consensus        11 ~~~~~~~~~~a~~~~~~~~~~~~-~~-~~--~g~~~l~~~l~~~la~~~g~~---~~i~~~~gt~al~~~~~~~---~~~   80 (418)
T 2c81_A           11 WPQHSDRTRRKIEEVFQSNRWAI-SG-YW--TGEESMERKFAKAFADFNGVP---YCVPTTSGSTALMLALEAL---GIG   80 (418)
T ss_dssp             SSCCCHHHHHHHHHHHHHTCCST-TS-BC--CSSCCHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHT---TCC
T ss_pred             CCCCCHHHHHHHHHHHhcCCccc-cC-cc--cCCHHHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHc---CCC
Confidence            34668999999999887632110 11 11  112445678999999999986   5677888899999999987   368


Q ss_pred             CCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC-CCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHH
Q 017640          156 SGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWS  234 (368)
Q Consensus       156 ~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~  234 (368)
                      +||+|+++.++|++....    ++..|++++.+++++ ++.+|+++|++++++++++|+++   ||||...++++|.++|
T Consensus        81 ~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~---~~~G~~~~~~~i~~~~  153 (418)
T 2c81_A           81 EGDEVIVPSLTWIATATA----VLNVNALPVFVDVEADTYCIDPQLIKSAITDKTKAIIPV---HLFGSMANMDEINEIA  153 (418)
T ss_dssp             TTCEEEEESSSCTHHHHH----HHHTTCEEEEECBCTTTCSBCHHHHGGGCCTTEEEECCB---CCTTCCCCHHHHHHHH
T ss_pred             CcCEEEECCCccHhHHHH----HHHcCCEEEEEecCCCCCCcCHHHHHHhhCCCCeEEEEe---CCcCCcccHHHHHHHH
Confidence            999999999999996544    446699999999986 68899999999999889988875   4799999999999999


Q ss_pred             HhcCCEEEEecCCcCCcc-cc-cCCCCCccEEEecC--cCcCCCCcceEEEEc-ccccccCCCcccCCcceeecccCCCC
Q 017640          235 HDVGAKVLVDACQSVPHM-VV-DVQGLDADFLVASS--HKMCGPTGIGFLFGK-SDLLSAMPPFLGGGEMISDVFLDHST  309 (368)
Q Consensus       235 ~~~g~~li~D~a~~~~~~-~~-~~~~~~~d~~~~s~--~K~~g~~G~G~l~~~-~~li~~l~~~~~g~~~~~~~~~~~~~  309 (368)
                      ++||+++|+|++|+.+.. .. ..... .|+.+.|+  ||.+|+..+|+++.+ +++++.+++...++........    
T Consensus       154 ~~~~~~li~D~a~~~~~~~~~~~~~~~-~~~~~~s~s~~K~~~~g~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~----  228 (418)
T 2c81_A          154 QEHNLFVIEDCAQSHGSVWNNQRAGTI-GDIGAFSCQQGKVLTAGEGGIIVTKNPRLFELIQQLRADSRVYCDDSS----  228 (418)
T ss_dssp             HHTTCEEEEECTTCTTCEETTEETTSS-SSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHHBTTEEECSCGG----
T ss_pred             HHCCCEEEEECcccccCccCCEecccc-cceEEEeccCCcccCCCCeEEEEECCHHHHHHHHHHHHhCcccccccc----
Confidence            999999999999998763 11 12222 35666666  999888338899885 6777666654433322110000    


Q ss_pred             CCCCCCCCC--CCCCCHHH----HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          310 FADPPSRFE--AGTPAIGE----AIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       310 ~~~~~~~~~--~gt~~~~~----~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                        .....+.  .|++.+.+    +..+.+++.......++.+.++..++.+++.+.|.+++|+
T Consensus       229 --~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~  289 (418)
T 2c81_A          229 --ELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQELDDKNAIREKNAMFLNDALSKIDGI  289 (418)
T ss_dssp             --GCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTE
T ss_pred             --ccccchhhccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence              0001111  11111110    0011122222222356778888889999999999887664

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.91  E-value=1.6e-23  Score=197.94  Aligned_cols=254  Identities=13%  Similarity=0.123  Sum_probs=180.0

Q ss_pred             CcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCC
Q 017640           79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD  158 (368)
Q Consensus        79 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd  158 (368)
                      .|+.+.+++.+.+......           ..+...++++.+++++|.+   ++++++|+++|+..++.++   .+++||
T Consensus        18 ~~~~~~~a~~~~~~~~~~~-----------~~~~~~~l~~~la~~~~~~---~~~~~~~gt~al~~~~~~~---~~~~gd   80 (393)
T 1mdo_A           18 MGAEELAAVKTVLDSGWIT-----------TGPKNQELEAAFCRLTGNQ---YAVAVSSATAGMHIALMAL---GIGEGD   80 (393)
T ss_dssp             CCHHHHHHHHHHHHHTCCS-----------SSHHHHHHHHHHHHHHCCS---EEEEESCHHHHHHHHHHHT---TCCTTC
T ss_pred             CCHHHHHHHHHHHhcCCcC-----------CChHHHHHHHHHHHHhCCC---cEEEecChHHHHHHHHHHc---CCCCCC
Confidence            5678888888887653111           0245668999999999975   7899999999999999987   368999


Q ss_pred             EEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC-CCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhc
Q 017640          159 EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDV  237 (368)
Q Consensus       159 ~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~  237 (368)
                      +|++++++|++...    .++..|++++.++.+++ +.+|+++|++++++++++|++++   |||.+.++++|.++|+++
T Consensus        81 ~Vl~~~~~~~~~~~----~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~---~~G~~~~~~~i~~l~~~~  153 (393)
T 1mdo_A           81 EVITPSMTWVSTLN----MIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVH---YAGAPADLDAIYALGERY  153 (393)
T ss_dssp             EEEEESSSCHHHHH----HHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBC---GGGCCCCHHHHHHHHHHH
T ss_pred             EEEeCCCccHhHHH----HHHHCCCEEEEEeccCCcCCCCHHHHHHhcCCCceEEEEeC---CCCCcCCHHHHHHHHHHc
Confidence            99999999998654    34567999999998865 68999999999988899988764   799999999999999999


Q ss_pred             CCEEEEecCCcCCcccccCCCCC-ccEEEecCc--CcCCCCcceEEEEc-ccccccCCCcccCCcceeecccCCCCCCCC
Q 017640          238 GAKVLVDACQSVPHMVVDVQGLD-ADFLVASSH--KMCGPTGIGFLFGK-SDLLSAMPPFLGGGEMISDVFLDHSTFADP  313 (368)
Q Consensus       238 g~~li~D~a~~~~~~~~~~~~~~-~d~~~~s~~--K~~g~~G~G~l~~~-~~li~~l~~~~~g~~~~~~~~~~~~~~~~~  313 (368)
                      |+++|+|++|+.|... +....+ .|++++|+|  |++++..+|+++.+ +++++.+++...++.... .....  ....
T Consensus       154 ~~~li~D~a~~~g~~~-~~~~~~~~d~~~~S~~k~K~l~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~--~~~~  229 (393)
T 1mdo_A          154 GIPVIEDAAHATGTSY-KGRHIGARGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVD-AWDRQ--SGGR  229 (393)
T ss_dssp             TCCBCEECTTCTTCEE-TTEETTSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC------------
T ss_pred             CCeEEEECccccCCeE-CCeecCCCCeEEEeCCCCCccccccceEEEeCCHHHHHHHHHHHhcCCccc-chhhh--cccc
Confidence            9999999999987542 222234 899999999  87765448999986 677776664433322111 00000  0111


Q ss_pred             CCCCC---CCC-CCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          314 PSRFE---AGT-PAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       314 ~~~~~---~gt-~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      ...++   .|+ .....+ +...++..+.  +++.+.++..++.+++.+.|.++
T Consensus       230 ~~~~~~~~~g~~~~~~~~-~~a~~~~~l~--~~~~~~~~~~~~~~~l~~~L~~~  280 (393)
T 1mdo_A          230 APQAEVLAPGYKYNLPDL-NAAIALAQLQ--KLDALNARRAAIAAQYHQAMADL  280 (393)
T ss_dssp             --CCEESSCCCBCCCCHH-HHHHHHHHHH--THHHHHHHHHHHHHHHHHHHHTS
T ss_pred             cccccccccCccCCCCHH-HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcC
Confidence            12221   222 111112 1222222222  46777888888999999999875

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.91  E-value=2e-23  Score=197.36  Aligned_cols=264  Identities=16%  Similarity=0.122  Sum_probs=183.8

Q ss_pred             CCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHH
Q 017640           66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV  145 (368)
Q Consensus        66 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~  145 (368)
                      ++++.+..+.+ ..++.+.+++.+.+.... .      .   ...+...++|+.++++++.+   ++++++|+|+|+..+
T Consensus        22 ~~~~~l~~~~p-~~~~~~~~a~~~~~~~~~-~------~---~~~~~~~~l~~~la~~~~~~---~~i~~~~gt~al~~~   87 (391)
T 3dr4_A           22 SDLPRISVAAP-RLDGNERDYVLECMDTTW-I------S---SVGRFIVEFEKAFADYCGVK---HAIACNNGTTALHLA   87 (391)
T ss_dssp             ------CCCCC-CCCSSHHHHHHHHHHHTC-C------S---SCSHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHH
T ss_pred             CCCceeccCCC-CCCHHHHHHHHHHHHcCC-c------c---CCChHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHH
Confidence            45567776655 456788888887776421 1      0   01345668999999999986   789999999999999


Q ss_pred             HHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC-CCCCCCHHHHHHhcccCceEEEEcccccccccc
Q 017640          146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN-DDESPDLDKLKEMLSRKTKLVVIHHISNMLASI  224 (368)
Q Consensus       146 ~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~  224 (368)
                      +.++   .+++||+|++++++|++....    ++..|++++.++++ +++.+|+++|++++++++++|++   +||||..
T Consensus        88 l~~~---~~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~---~n~tG~~  157 (391)
T 3dr4_A           88 LVAM---GIGPGDEVIVPSLTYIASANS----VTYCGATPVLVDNDPRTFNLDAAKLEALITPRTKAIMP---VHLYGQI  157 (391)
T ss_dssp             HHHH---TCCTTCEEEEESSSCTHHHHH----HHHTTCEEEEECBCTTTCSBCGGGSGGGCCTTEEEECC---BCGGGCC
T ss_pred             HHHc---CCCCcCEEEECCCchHHHHHH----HHHCCCEEEEEecCccccCcCHHHHHHhcCCCceEEEE---ECCCCCh
Confidence            9988   478999999999999996544    44569999999998 56889999999999988888884   5789999


Q ss_pred             cCHHHHHHHHHhcCCEEEEecCCcCCcccccC--CCCCccEEEec--CcCcCCCCcceEEEEccc-ccccCCCcccCCcc
Q 017640          225 LPIEEIVHWSHDVGAKVLVDACQSVPHMVVDV--QGLDADFLVAS--SHKMCGPTGIGFLFGKSD-LLSAMPPFLGGGEM  299 (368)
Q Consensus       225 ~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~--~~~~~d~~~~s--~~K~~g~~G~G~l~~~~~-li~~l~~~~~g~~~  299 (368)
                      .|+++|.++|++||+++|+|++|+.|....+.  ... .|+.+.|  .+|.+++..+|+++.+++ +.+.+++...++..
T Consensus       158 ~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~-~di~~~S~s~~K~l~~g~gg~~~~~~~~~~~~~~~~~~~g~~  236 (391)
T 3dr4_A          158 CDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSL-GDCATFSFFGNAIITTGEGGMITTNDDDLAAKMRLLRGQGMD  236 (391)
T ss_dssp             CCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS-SSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHHBTTCC
T ss_pred             hhHHHHHHHHHHcCCEEEEECcccccceECCeeeccc-CCEEEEECCCCCcCCcCCeEEEEECCHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999987653322  222 3666666  558887633788877654 55555544333222


Q ss_pred             eeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          300 ISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      ..      ..+......+..      .+..+.+++.+....+++.+.++.+++.+++.+.|.++ |++
T Consensus       237 ~~------~~~~~~~~g~~~------~~~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  291 (391)
T 3dr4_A          237 PN------RRYWFPIVGFNY------RMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARL-GNR  291 (391)
T ss_dssp             TT------STTCCSSCCCBC------BCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGGG-TTS
T ss_pred             CC------Cccccccccccc------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-Ccc
Confidence            10      000000011111      12233344444444567888999999999999999887 643

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.91  E-value=1.1e-23  Score=200.33  Aligned_cols=264  Identities=14%  Similarity=0.012  Sum_probs=187.2

Q ss_pred             CCeEEeccCCC------CCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc-CC-----CCCCcEE
Q 017640           66 KKLVYLDNAAT------SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI-NA-----SDSGEIV  133 (368)
Q Consensus        66 ~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~-~~-----~~~~~v~  133 (368)
                      ++++.|..+.+      .++++.+.+++.+.+... ...+  .+.    ......++|+++++++ +.     ++ ++|+
T Consensus        30 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~~--~y~----~~~g~~~lr~~la~~~~~~~~~~~~~-~~v~  101 (412)
T 1ajs_A           30 PRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNS-SLNH--EYL----PILGLAEFRTCASRLALGDDSPALQE-KRVG  101 (412)
T ss_dssp             TTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCT-TCCC--CCC----CTTCCHHHHHHHHHHHHCTTCHHHHT-TCEE
T ss_pred             CCceeeccceecCCCCCccccHHHHHHHHHhhhCh-hhcc--CCC----CCCCCHHHHHHHHHHHhcCCCCccCC-CcEE
Confidence            56677777763      356688999988776221 0110  010    0122347999999998 43     33 4899


Q ss_pred             E--eCCHHHHHHHHHHHccCCCCCCC-----CEEEEcCCCCcccHHHHHHHHHHcCCE-EEEEeCC--CCCCCCHHHHHH
Q 017640          134 F--TKNATEAINLVAYSWGLSNLKSG-----DEVILTVAEHHSAIVPWQLVAQKTGAN-LKFLNLN--DDESPDLDKLKE  203 (368)
Q Consensus       134 ~--t~g~t~a~~~~~~~~~~~~~~~g-----d~vl~~~~~~~s~~~~~~~~~~~~g~~-v~~v~~~--~~~~~d~~~l~~  203 (368)
                      +  |+|+++|+.+++..+.  .+++|     |+|++.+|+|++.    ...++..|++ ++.++.+  .++.+|+++|++
T Consensus       102 ~~~t~gg~~a~~~~~~~~~--~~~~g~~~~~d~Vl~~~p~y~~~----~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~  175 (412)
T 1ajs_A          102 GVQSLGGTGALRIGAEFLA--RWYNGTNNKDTPVYVSSPTWENH----NGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLS  175 (412)
T ss_dssp             EEEEEHHHHHHHHHHHHHH--HHSSSSSCCCSCEEEEESCCTHH----HHHHHHTTCSCEEEEECEETTTTEECHHHHHH
T ss_pred             EEECCCcHHHHHHHHHHHH--HhCcCcCCCCCeEEEcCCCcHHH----HHHHHHcCCceeEEEeeecCCCCccCHHHHHH
Confidence            9  9999999999965321  15688     9999999999884    4445667999 9999984  457789999999


Q ss_pred             hccc---CceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCc-CCcc-------ccc-CC-CCCccEEEec
Q 017640          204 MLSR---KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQS-VPHM-------VVD-VQ-GLDADFLVAS  267 (368)
Q Consensus       204 ~l~~---~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~-~~~~-------~~~-~~-~~~~d~~~~s  267 (368)
                      ++++   +++++++++++||||.++|   +++|.++|++||+++|+|++|. ++..       ++. +. ..+.++++.|
T Consensus       176 ~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s  255 (412)
T 1ajs_A          176 DLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQS  255 (412)
T ss_dssp             HHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEE
T ss_pred             HHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEe
Confidence            9875   6788889999999999988   5689999999999999999976 3221       121 21 1234588999


Q ss_pred             CcCcCCCCc--ceEEEE---ccccc----ccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 017640          268 SHKMCGPTG--IGFLFG---KSDLL----SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS  338 (368)
Q Consensus       268 ~~K~~g~~G--~G~l~~---~~~li----~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~  338 (368)
                      +||.+|++|  +|++++   +++++    +.+....                     +...++++.....++..+++...
T Consensus       256 ~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~a~~~~l~~~~  314 (412)
T 1ajs_A          256 FSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIV---------------------RVTWSNPPAQGARIVARTLSDPE  314 (412)
T ss_dssp             CTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHH---------------------HTTTSSCCSHHHHHHHHHHHSHH
T ss_pred             cccccCCCCcceEEEEEecCCHHHHHHHHHHHHHHH---------------------hcccCCCChHHHHHHHHHHcCcc
Confidence            999999988  899999   77633    2222111                     11122456666777777777542


Q ss_pred             -----HhCHHHHHHHHHHHHHHHHHHHHhhc
Q 017640          339 -----TIGMQKIHAYEVKWIICSIIVIQERH  364 (368)
Q Consensus       339 -----~~g~~~i~~~~~~l~~~l~~~l~~~~  364 (368)
                           ...++.++++.+++.+++.+.|.+..
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  345 (412)
T 1ajs_A          315 LFHEWTGNVKTMADRILSMRSELRARLEALK  345 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence                 22467888899999999999998763

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.91  E-value=8.8e-23  Score=192.88  Aligned_cols=254  Identities=15%  Similarity=0.145  Sum_probs=185.1

Q ss_pred             EEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHH
Q 017640           69 VYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI  142 (368)
Q Consensus        69 i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~  142 (368)
                      -|+|..+      .+..++.+.+++.+.+.........       ...+...++++.+++++|.   +++++++|+++|+
T Consensus        37 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-------~~~~~~~~l~~~la~~~g~---~~v~~~~~gt~a~  106 (392)
T 3ruy_A           37 RYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRA-------FHSDQLGPWYEKVAKLTNK---EMVLPMNTGAEAV  106 (392)
T ss_dssp             EEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTT-------SEETTHHHHHHHHHHHHTC---SEEEEESSHHHHH
T ss_pred             EEEEcCCChhhhccCCCCHHHHHHHHHHHHhccccccc-------cCCHHHHHHHHHHHHhcCC---CEEEEeCcHHHHH
Confidence            4666653      3346899999999888654221110       1134456899999999983   3899999999999


Q ss_pred             HHHHHHccCC-----CC-CCCCEEEEcCCCCcccHHHHHHHHHHc---------CCEEEEEeCCCCCCCCHHHHHHhccc
Q 017640          143 NLVAYSWGLS-----NL-KSGDEVILTVAEHHSAIVPWQLVAQKT---------GANLKFLNLNDDESPDLDKLKEMLSR  207 (368)
Q Consensus       143 ~~~~~~~~~~-----~~-~~gd~vl~~~~~~~s~~~~~~~~~~~~---------g~~v~~v~~~~~~~~d~~~l~~~l~~  207 (368)
                      ..++..+...     .. ..+|.|++.+++|++............         ..++..++.+     |+++|++++++
T Consensus       107 ~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~  181 (392)
T 3ruy_A          107 ETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYG-----DLEALKAAITP  181 (392)
T ss_dssp             HHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTT-----CHHHHHHHCCT
T ss_pred             HHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcc-----cHHHHHHHhcc
Confidence            9999876210     00 236799999999998765443321110         0125555544     89999999999


Q ss_pred             CceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEEecCcCcCCC--Cc
Q 017640          208 KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGP--TG  276 (368)
Q Consensus       208 ~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~g~--~G  276 (368)
                      ++++|++++++||||.++|    +++|.++|++||+++|+|++|+ ++..    ..+.....+|++++  +|.+++  ..
T Consensus       182 ~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~--SK~l~gG~~~  259 (392)
T 3ruy_A          182 NTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDMYIL--GKALGGGVFP  259 (392)
T ss_dssp             TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGGTTTSC
T ss_pred             CeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCCCCEEEE--chhhhCChhh
Confidence            9999999999999999999    9999999999999999999996 3321    22222345677755  597665  33


Q ss_pred             ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 017640          277 IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICS  356 (368)
Q Consensus       277 ~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l  356 (368)
                      +|++++++++++.+.+...+..                     .+.+....+++..+++.+..   +.+.++.+++.+++
T Consensus       260 ~G~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l  315 (392)
T 3ruy_A          260 ISCAAANRDILGVFEPGSHGST---------------------FGGNPLACAVSIAALEVLEE---EKLTERSLQLGEKL  315 (392)
T ss_dssp             CEEEEECHHHHTTCCTTSSCCS---------------------STTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHH
T ss_pred             hEEEEECHHHHhhhccCCcCCC---------------------CCCCHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHH
Confidence            8999999998887776543222                     26788888888888887765   56788899999999


Q ss_pred             HHHHHhh
Q 017640          357 IIVIQER  363 (368)
Q Consensus       357 ~~~l~~~  363 (368)
                      .+.|.++
T Consensus       316 ~~~L~~~  322 (392)
T 3ruy_A          316 VGQLKEI  322 (392)
T ss_dssp             HHHHTTC
T ss_pred             HHHHHHh
Confidence            9998875

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.91  E-value=4.1e-24  Score=201.06  Aligned_cols=219  Identities=15%  Similarity=0.093  Sum_probs=164.1

Q ss_pred             CeEEeccCC-CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHH
Q 017640           67 KLVYLDNAA-TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV  145 (368)
Q Consensus        67 ~~i~l~~~~-~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~  145 (368)
                      .++.+..++ ..++++.+++++..    + .         ++  ....+.+++.+++++|.++++++++++|+++|+..+
T Consensus        29 ~v~~~~~~~~~~~~~~~v~~a~~~----~-~---------~~--~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~   92 (374)
T 2aeu_A           29 ALYDLSGLSGGFLIDEKDKALLNT----Y-I---------GS--SYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILAT   92 (374)
T ss_dssp             GCEECSSCCCCCCCCHHHHHHHTS----T-T---------HH--HHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred             ceeeecccCCCCCCCHHHHHHHHH----h-c---------Cc--hHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHH
Confidence            445444443 44889999988851    1 1         11  122356778888999985334889999999999999


Q ss_pred             HHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceE-EEEcccccccc-c
Q 017640          146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKL-VVIHHISNMLA-S  223 (368)
Q Consensus       146 ~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~-v~~~~~~n~tG-~  223 (368)
                      +.++      +||+|++++|+|++....+. .++..|++++.+       .|+++|+++ ++++++ |++++++|||| .
T Consensus        93 ~~~~------~gd~Vl~~~~~y~~~~~~~~-~~~~~g~~~~~v-------~d~~~l~~~-~~~~~~~v~~~~p~nptG~~  157 (374)
T 2aeu_A           93 ILAL------KPKKVIHYLPELPGHPSIER-SCKIVNAKYFES-------DKVGEILNK-IDKDTLVIITGSTMDLKVIE  157 (374)
T ss_dssp             HHHH------CCSEEEEECSSSSCCTHHHH-HHHHTTCEEEEE-------SCHHHHHTT-CCTTEEEEEECBCTTSCBCC
T ss_pred             HHhC------CCCEEEEecCCCCccHHHHH-HHHHcCcEEEEe-------CCHHHHHhc-CCCccEEEEEccCCCCCCCC
Confidence            9864      89999999999988765454 567789999888       289999998 778999 99999999999 7


Q ss_pred             ccCHHHHHHHHHhcCCEEEEecCCcCCcc-cc-c--CCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCcc
Q 017640          224 ILPIEEIVHWSHDVGAKVLVDACQSVPHM-VV-D--VQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEM  299 (368)
Q Consensus       224 ~~~l~~i~~l~~~~g~~li~D~a~~~~~~-~~-~--~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~  299 (368)
                      ..++++|.++|++||+++|+|++|+.+.. +. .  ....++|++++|+||.+++.++|++++++++++.++.....   
T Consensus       158 ~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g~~~G~~~~~~~~~~~l~~~~~~---  234 (374)
T 2aeu_A          158 LENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGLLAGKKELVDKIYIEGTK---  234 (374)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSCSCEEEEEEHHHHHHHHHHHHT---
T ss_pred             cccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccCcceEEEEECHHHHHHHHHhhcc---
Confidence            88899999999999999999999975431 11 1  11246899999999987656789999999988876643211   


Q ss_pred             eeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 017640          300 ISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL  337 (368)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~  337 (368)
                                       + .++++.....++..+++.+
T Consensus       235 -----------------~-~~~~~~~~~~a~~~al~~~  254 (374)
T 2aeu_A          235 -----------------F-GLEAQPPLLAGIYRALKNF  254 (374)
T ss_dssp             -----------------T-TCBCCHHHHHHHHHHHHHC
T ss_pred             -----------------c-cCCCCHHHHHHHHHHHHHH
Confidence                             1 1256666777777777654

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.91  E-value=3.4e-23  Score=195.44  Aligned_cols=251  Identities=18%  Similarity=0.096  Sum_probs=174.4

Q ss_pred             CcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCC
Q 017640           79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD  158 (368)
Q Consensus        79 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd  158 (368)
                      .++.+.+++.+.+...  ..   .    +...+...++|+.+++++|.+  +.|++++| |+|+.+++.++   .+++||
T Consensus        15 ~~~~~~~a~~~~l~~~--~~---~----~~~~~~~~~l~~~la~~~~~~--~~i~~~sG-t~al~~~l~~l---~~~~gd   79 (388)
T 1b9h_A           15 YDDAERNGLVRALEQG--QW---W----RMGGDEVNSFEREFAAHHGAA--HALAVTNG-THALELALQVM---GVGPGT   79 (388)
T ss_dssp             CCHHHHHHHHHHHHTS--CC---B----TTTCSHHHHHHHHHHHHTTCS--EEEEESCH-HHHHHHHHHHT---TCCTTC
T ss_pred             CCHHHHHHHHHHHHcC--Ce---e----ecCCHHHHHHHHHHHHHhCCC--eEEEeCCH-HHHHHHHHHHc---CCCCcC
Confidence            4589999998887652  00   0    111245668999999999986  35666655 89999999987   368999


Q ss_pred             EEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC-CCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhc
Q 017640          159 EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDV  237 (368)
Q Consensus       159 ~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~  237 (368)
                      +|++++++|++...    .++..|++++.++++++ +.+|+++|++++++++++|+   ++||||.+.|+++|.++|++|
T Consensus        80 ~Vi~~~~~~~~~~~----~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~la~~~  152 (388)
T 1b9h_A           80 EVIVPAFTFISSSQ----AAQRLGAVTVPVDVDAATYNLDPEAVAAAVTPRTKVIM---PVHMAGLMADMDALAKISADT  152 (388)
T ss_dssp             EEEEESSSCTHHHH----HHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHH
T ss_pred             EEEECCCccHHHHH----HHHHcCCEEEEEecCCCcCCCCHHHHHHhcCcCceEEE---EeCCccCcCCHHHHHHHHHHc
Confidence            99999999999654    34567999999999864 88999999999988888877   889999999999999999999


Q ss_pred             CCEEEEecCCcCCccc--ccCCCCCccEEEecCc--CcCCCCcceEEEEccc-c--cccCCCcccCCcceeecccCCCCC
Q 017640          238 GAKVLVDACQSVPHMV--VDVQGLDADFLVASSH--KMCGPTGIGFLFGKSD-L--LSAMPPFLGGGEMISDVFLDHSTF  310 (368)
Q Consensus       238 g~~li~D~a~~~~~~~--~~~~~~~~d~~~~s~~--K~~g~~G~G~l~~~~~-l--i~~l~~~~~g~~~~~~~~~~~~~~  310 (368)
                      |+++|+|++|+.|...  .++..++ |+.++|++  |.+++..+|+++++++ +  ++.++....+ +...    ....+
T Consensus       153 ~~~li~D~a~~~g~~~~~~~~~~~~-~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~  226 (388)
T 1b9h_A          153 GVPLLQDAAHAHGARWQGKRVGELD-SIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSC-GRPR----DDRRY  226 (388)
T ss_dssp             TCCBCEECTTCTTCEETTEEGGGSS-SCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBT-TCCT----TCSSC
T ss_pred             CCEEEEecchhcCCccCCeeccccc-ceEEEEccCCCcccCCCeEEEEECCHHHHHHHHHHHHHhC-CCCc----cCccc
Confidence            9999999999987653  2333333 56666655  7665544799998876 4  3444322111 1100    00000


Q ss_pred             CCCCCCCCCCC---CCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          311 ADPPSRFEAGT---PAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       311 ~~~~~~~~~gt---~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                          .....|+   .+....+++..++++     ++...++.+++.+++.+.|.+++|+
T Consensus       227 ----~~~~~g~~~~~~~~~~a~~~~~~~~-----l~~~~~~~~~~~~~l~~~L~~~~~~  276 (388)
T 1b9h_A          227 ----FHKIAGSNMRLNEFSASVLRAQLAR-----LDEQIAVRDERWTLLSRLLGAIDGV  276 (388)
T ss_dssp             ----CCCSCCCBCBCBHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHTSTTC
T ss_pred             ----eeecccccCCcCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhccCCCc
Confidence                0112233   344444333333332     4556777788899999999887664

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.91  E-value=2e-23  Score=199.36  Aligned_cols=162  Identities=20%  Similarity=0.282  Sum_probs=141.4

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      .+..+++++++++++|.+   ..++++++++|+..++.++    +++||+|++.++.|++....+...++..|+++++++
T Consensus        81 ~p~~~~le~~lA~l~g~~---~~v~~~sG~~Ai~~al~al----~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~  153 (430)
T 3ri6_A           81 NPTVEDLEQRLKNLTGAL---GVLALGSGMAAISTAILTL----ARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVD  153 (430)
T ss_dssp             CHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHH----CCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred             CHHHHHHHHHHHHHHCCC---cEEEECCHHHHHHHHHHHH----hCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeC
Confidence            456778999999999986   4566677789999999998    899999999999999988777767788899999999


Q ss_pred             CCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCc
Q 017640          190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH  269 (368)
Q Consensus       190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~  269 (368)
                      .+     |+++|++++++++++|++++++||||.+.|+++|.++|++||+++|+|++|+.+.. .+....+.|+++.|++
T Consensus       154 ~~-----d~~~l~~ai~~~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~-~~~~~~g~div~~S~s  227 (430)
T 3ri6_A          154 VM-----DSLAVEHACDETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYL-LEAKRLGVDIEVLSST  227 (430)
T ss_dssp             TT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTT-CCGGGGTCSEEEEECC
T ss_pred             CC-----CHHHHHHhhCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc-CChHHcCCEEEEECCc
Confidence            87     89999999999999999999999999999999999999999999999999998765 3444568999999999


Q ss_pred             CcCCCCc---ceEEEEcc
Q 017640          270 KMCGPTG---IGFLFGKS  284 (368)
Q Consensus       270 K~~g~~G---~G~l~~~~  284 (368)
                      |++|++|   .|+++.+.
T Consensus       228 K~l~g~g~~~gG~vv~~~  245 (430)
T 3ri6_A          228 KFISGGGTSVGGVLIDHG  245 (430)
T ss_dssp             CEEETTEEECCEEEEECS
T ss_pred             ccccCCCCceEEEEEECC
Confidence            9888765   56666433

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.91  E-value=1e-23  Score=199.40  Aligned_cols=264  Identities=13%  Similarity=0.043  Sum_probs=184.0

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC-----CCCcEEE
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-----DSGEIVF  134 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-----~~~~v~~  134 (368)
                      ++++.|..+.      ..++++.+.+++.+.+...  ..+  .+.    ......++|++++++++..     ++++|++
T Consensus        26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~--~y~----~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~   97 (396)
T 2q7w_A           26 PGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE--TTK--NYL----GIDGIPEFGRCTQELLFGKGSALINDKRART   97 (396)
T ss_dssp             --CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHC--CCC--CCC----CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEE
T ss_pred             CCceecccccccCCCCCccCcHHHHHHHHhhcCcc--ccc--CCC----CCCCCHHHHHHHHHHHhcCCCCccccccEEE
Confidence            4556776665      2256789999998876542  111  110    1122347899999988321     1348888


Q ss_pred             --eCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC--CCCCCCHHHHHHhccc---
Q 017640          135 --TKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDESPDLDKLKEMLSR---  207 (368)
Q Consensus       135 --t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~l~~---  207 (368)
                        |+|+++|+.+++.++.  .+.+||+|++.+|+|++..    ..++..|++++.++.+  +++.+|+++|++++++   
T Consensus        98 ~~~~g~~~a~~~~~~~~~--~~~~gd~Vl~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~  171 (396)
T 2q7w_A           98 AQTPGGTGALRVAADFLA--KNTSVKRVWVSNPSWPNHK----SVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQA  171 (396)
T ss_dssp             EEESHHHHHHHHHHHHHH--HHSCCCEEEEEESCCTHHH----HHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCT
T ss_pred             EecccchhhHHHHHHHHH--HhCCCCEEEEcCCCchhHH----HHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhCCC
Confidence              9999999999987652  1368999999999998844    4456679999999985  5678899999999975   


Q ss_pred             CceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc-------ccc-CCC-CCccEEEecCcCcCCCC
Q 017640          208 KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM-------VVD-VQG-LDADFLVASSHKMCGPT  275 (368)
Q Consensus       208 ~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~-------~~~-~~~-~~~d~~~~s~~K~~g~~  275 (368)
                      +++++++++++||||.++|   +++|.++|++||+++|+|++|+....       ++. +.. .+.+++++|+||.+|++
T Consensus       172 ~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~  251 (396)
T 2q7w_A          172 GDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLY  251 (396)
T ss_dssp             TCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCG
T ss_pred             CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEecccccccc
Confidence            4688899999999999998   56899999999999999999884321       121 211 23568899999999988


Q ss_pred             c--ceEEEE---ccc----ccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-----HhC
Q 017640          276 G--IGFLFG---KSD----LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS-----TIG  341 (368)
Q Consensus       276 G--~G~l~~---~~~----li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~-----~~g  341 (368)
                      |  +|++++   +++    +++.+....                     +...++++.....++..+++...     ...
T Consensus       252 G~riG~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~  310 (396)
T 2q7w_A          252 NERVGACTLVAADSETVDRAFSQMKAAI---------------------RANYSNPPAHGASVVATILSNDALRAIWEQE  310 (396)
T ss_dssp             GGCCEEEEEECSSHHHHHHHHHHHHHHH---------------------HTTTSSCCHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             ccccceEEEEcCCHHHHHHHHHHHHHHH---------------------hhccCCCCcHHHHHHHHHhcChhhHHHHHHH
Confidence            8  799987   453    333322111                     11122457777777766665330     124


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhc
Q 017640          342 MQKIHAYEVKWIICSIIVIQERH  364 (368)
Q Consensus       342 ~~~i~~~~~~l~~~l~~~l~~~~  364 (368)
                      ++.++++.+++.+++.+.|.+..
T Consensus       311 ~~~~~~~~~~~~~~l~~~L~~~~  333 (396)
T 2q7w_A          311 LTDMRQRIQRMRQLFVNTLQEKG  333 (396)
T ss_dssp             HHHC-CHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcC
Confidence            66777888888899988888763

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.91  E-value=7e-23  Score=195.77  Aligned_cols=256  Identities=16%  Similarity=0.107  Sum_probs=180.7

Q ss_pred             eccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHc
Q 017640           71 LDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSW  149 (368)
Q Consensus        71 l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~  149 (368)
                      |..+.+. +.|+.+.+++.+.+... .++.         ..+...++|+.+++++|.+   ++++|+|+++|+..++.++
T Consensus        21 l~~~~p~~~~p~~~~~a~~~~~~~~-~y~~---------~~~~~~~l~~~la~~~~~~---~v~~~~ggt~al~~~l~~l   87 (424)
T 2po3_A           21 LLVGRPNRIDRARLYERLDRALDSQ-WLSN---------GGPLVREFEERVAGLAGVR---HAVATCNATAGLQLLAHAA   87 (424)
T ss_dssp             EETTCCCCCCHHHHHHHHHHHHHHT-CCSS---------SCHHHHHHHHHHHHHHTSS---EEEEESCHHHHHHHHHHHH
T ss_pred             ccccCCCCCChHHHHHHHHHHHhcC-Cccc---------CCHHHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHc
Confidence            4444444 34778899988887642 1110         0245668999999999974   8999999999999999987


Q ss_pred             cCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC-CCCCCHHHHHHhcccCceEEEEcccccccccccCHH
Q 017640          150 GLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIE  228 (368)
Q Consensus       150 ~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~  228 (368)
                          . +||+|++++++|++...    .++..|++++.+++++ ++.+|+++|++++++++++|++++   |||...+++
T Consensus        88 ----~-~gd~Vlv~~~~~~~~~~----~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~tG~~~~l~  155 (424)
T 2po3_A           88 ----G-LTGEVIMPSMTFAATPH----ALRWIGLTPVFADIDPDTGNLDPDQVAAAVTPRTSAVVGVH---LWGRPCAAD  155 (424)
T ss_dssp             ----T-CCSEEEEESSSCTHHHH----HHHHTTCEEEEECBCTTTSSBCHHHHGGGCCTTEEEEEEEC---GGGCCCCHH
T ss_pred             ----C-CCCEEEECCCccHHHHH----HHHHcCCEEEEEecCCCcCCcCHHHHHHhhCcCCcEEEEEC---CCCCcCCHH
Confidence                2 68999999999998654    3456799999999986 678999999999988899998864   799999999


Q ss_pred             HHHHHHHhcCCEEEEecCCcCCcccccCCCC--CccEEEecCc--CcCCCCcceEEEEc-ccccccCCCcccCCcceeec
Q 017640          229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGL--DADFLVASSH--KMCGPTGIGFLFGK-SDLLSAMPPFLGGGEMISDV  303 (368)
Q Consensus       229 ~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~--~~d~~~~s~~--K~~g~~G~G~l~~~-~~li~~l~~~~~g~~~~~~~  303 (368)
                      +|.++|++||+++|+|++|+.|.. .+....  ..|++++|+|  |.+++..+|+++.+ +++++.+++....+....  
T Consensus       156 ~i~~la~~~~~~li~Dea~~~g~~-~~~~~~~~~~di~~~S~sk~K~l~~~~~G~~v~~~~~l~~~l~~~~~~~~~~~--  232 (424)
T 2po3_A          156 QLRKVADEHGLRLYFDAAHALGCA-VDGRPAGSLGDAEVFSFHATKAVNAFEGGAVVTDDADLAARIRALHNFGFDLP--  232 (424)
T ss_dssp             HHHHHHHHTTCEEEEECTTCTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHHBTTTTCT--
T ss_pred             HHHHHHHHcCCEEEEECccccCCe-ECCeecccccCEEEEeCCCCCCccCCCCeEEEeCCHHHHHHHHHHHhcCcccc--
Confidence            999999999999999999997654 221111  2579999998  67776448999998 677776654433211100  


Q ss_pred             ccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          304 FLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       304 ~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                            +..  ..  .|.......+++..++..+.  +++.+.++..++.+++.+.|.+++|+
T Consensus       233 ------~~~--~~--~g~~~~~~~~~aa~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~~g~  283 (424)
T 2po3_A          233 ------GGS--PA--GGTNAKMSEAAAAMGLTSLD--AFPEVIDRNRRNHAAYREHLADLPGV  283 (424)
T ss_dssp             ------TCC--TT--CCCBCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTCSCTTE
T ss_pred             ------ccc--cc--cCcCCCcCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhccCCCc
Confidence                  000  00  11110001122222333222  35677888889999999988776553

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.91  E-value=1.2e-23  Score=200.05  Aligned_cols=173  Identities=21%  Similarity=0.211  Sum_probs=145.8

Q ss_pred             HHHHHHHHHHHcCCCCCCcEEE--eCCHHHHHHHHHHHccCCCCCCCCEEEEcC-CCCcccHHHH-------HHHHHHcC
Q 017640          113 YELARKKVAAFINASDSGEIVF--TKNATEAINLVAYSWGLSNLKSGDEVILTV-AEHHSAIVPW-------QLVAQKTG  182 (368)
Q Consensus       113 ~~~~r~~la~~~~~~~~~~v~~--t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~-~~~~s~~~~~-------~~~~~~~g  182 (368)
                      .+++++.+++++|.+.  .+++  ++|+++|+..++.++    +++||+|++.+ +.|.+....+       ...++..|
T Consensus        76 ~~~Le~~lA~l~g~e~--alv~p~~~sGt~A~~~al~al----l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G  149 (427)
T 3hvy_A           76 RDSLDRVYANIFNTES--AFVRPHFVNGTHAIGAALFGN----LRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYG  149 (427)
T ss_dssp             HHHHHHHHHHHHTCSE--EEEETTCCSHHHHHHHHHHHT----CCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGT
T ss_pred             HHHHHHHHHHHhCCCc--eEEeCCCCcHHHHHHHHHHHh----cCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcC
Confidence            6789999999999873  3443  788899999999998    89999999998 8888765333       13345679


Q ss_pred             CEEEEEeCCCCCCCCHHHHHHhcc--cCceEEEEcc----cccccccccCHHHHHHHHHh--cCCEEEEecCCcCCcccc
Q 017640          183 ANLKFLNLNDDESPDLDKLKEMLS--RKTKLVVIHH----ISNMLASILPIEEIVHWSHD--VGAKVLVDACQSVPHMVV  254 (368)
Q Consensus       183 ~~v~~v~~~~~~~~d~~~l~~~l~--~~~~~v~~~~----~~n~tG~~~~l~~i~~l~~~--~g~~li~D~a~~~~~~~~  254 (368)
                      ++++.++. +++.+|+++|+++++  +++++|++++    ++||||.+.++++|.++|++  ||+++++|++|+.+....
T Consensus       150 ~~~~~v~~-~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~  228 (427)
T 3hvy_A          150 VKYKMVDL-KDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEEK  228 (427)
T ss_dssp             CEEEECCC-BTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTTSSS
T ss_pred             CEEEEecC-CCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCccccccCC
Confidence            99999998 778899999999998  7899999999    99999999999999999999  899999999999776322


Q ss_pred             cCCCCCccEEEecCcCcCCCCc---ceEEEEcccccccCCC
Q 017640          255 DVQGLDADFLVASSHKMCGPTG---IGFLFGKSDLLSAMPP  292 (368)
Q Consensus       255 ~~~~~~~d~~~~s~~K~~g~~G---~G~l~~~~~li~~l~~  292 (368)
                      +....+.|++++|+||.+|+.|   .|++++++++++.++.
T Consensus       229 ~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~  269 (427)
T 3hvy_A          229 EPTDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATF  269 (427)
T ss_dssp             CGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHH
T ss_pred             CCcccCCeEEEECCcccccccccceEEEEEECHHHHHHHHH
Confidence            3334578999999999887643   5999999999887764

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.91  E-value=5e-24  Score=203.00  Aligned_cols=255  Identities=14%  Similarity=0.135  Sum_probs=173.3

Q ss_pred             CCCcHHHHHHHHHHHHHhh--ccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCC
Q 017640           77 SQKPIAVLKALQNYYEAYN--SNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNL  154 (368)
Q Consensus        77 ~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~  154 (368)
                      .+.++.+.+++.+.+....  .+++...+..........+.+++.+++++|.++. .|++++ +++++..++.++    +
T Consensus        40 n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~v~~~s-Gs~a~~~a~~~~----~  113 (420)
T 3gbx_A           40 NYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYA-NVQPHS-GSQANFAVYTAL----L  113 (420)
T ss_dssp             CCCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEE-ECCCSS-HHHHHHHHHHHH----C
T ss_pred             CCCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCc-eeEecC-cHHHHHHHHHHh----c
Confidence            3479999999988774422  2222111111111234455677899999999643 454555 588999999988    8


Q ss_pred             CCCCEEEEcCCCCcccHHHHHH-HHHHcCCEEEEEeCCCCCCCCHHHHHHhccc-CceEEEEcccccccccccCHHHHHH
Q 017640          155 KSGDEVILTVAEHHSAIVPWQL-VAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASILPIEEIVH  232 (368)
Q Consensus       155 ~~gd~vl~~~~~~~s~~~~~~~-~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~l~~i~~  232 (368)
                      ++||+|++.+++|.++...... .....+...+.++.+.++.+|+++|++++++ ++++|++++++|+  ...|+++|.+
T Consensus       114 ~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~--~~~~l~~l~~  191 (420)
T 3gbx_A          114 QPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEHKPKMIIGGFSAYS--GVVDWAKMRE  191 (420)
T ss_dssp             CTTCEEEEEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHHCCSEEEECCTTCC--SCCCHHHHHH
T ss_pred             CCCCEEEecchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHhcCCeEEEEecCccC--CccCHHHHHH
Confidence            9999999999999885422221 1112245666777777788999999999987 5899999888875  4788999999


Q ss_pred             HHHhcCCEEEEecCCcCCcc-----cccCCCCCccEEEecCcCcC-CCCcceEEEEcc---cccccCCCcccCCcceeec
Q 017640          233 WSHDVGAKVLVDACQSVPHM-----VVDVQGLDADFLVASSHKMC-GPTGIGFLFGKS---DLLSAMPPFLGGGEMISDV  303 (368)
Q Consensus       233 l~~~~g~~li~D~a~~~~~~-----~~~~~~~~~d~~~~s~~K~~-g~~G~G~l~~~~---~li~~l~~~~~g~~~~~~~  303 (368)
                      +|++||+++|+|++|+.+..     +....  .+|++++|+||.+ |+.| |+++.++   ++.+.+.+....+      
T Consensus       192 l~~~~~~~li~De~~~~~~~~~~~~~~~~~--~~di~~~s~sK~~~g~~g-g~~~~~~~~~~~~~~~~~~~~~~------  262 (420)
T 3gbx_A          192 IADSIGAYLFVDMAHVAGLIAAGVYPNPVP--HAHVVTTTTHKTLAGPRG-GLILAKGGDEELYKKLNSAVFPS------  262 (420)
T ss_dssp             HHHHTTCEEEEECTTTHHHHHTTSSCCSTT--TSSEEEEESSGGGCSCSC-EEEEESSCCHHHHHHHHHHHC--------
T ss_pred             HHHHcCCEEEEECCcchhceecccCCcccc--cCCEEEeecccCCCCCCc-eEEEEcCCcHHHHHHhhhhcCCC------
Confidence            99999999999999875443     22222  4899999999987 5665 9999988   5555544332211      


Q ss_pred             ccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHh
Q 017640          304 FLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       304 ~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~  362 (368)
                                    ..++++...++++..++......+++.+.++..++.+++.+.|.+
T Consensus       263 --------------~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  307 (420)
T 3gbx_A          263 --------------AQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLN  307 (420)
T ss_dssp             ----------------CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------CCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Confidence                          134677777777777776554335678889999999999999987

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.91  E-value=4.2e-23  Score=197.18  Aligned_cols=161  Identities=16%  Similarity=0.204  Sum_probs=136.9

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEE-
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL-  188 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v-  188 (368)
                      .+...++++.+++++|.+   ..++++++++|+..++.++    +++||+|+++.++|+++...+...++..|++++.+ 
T Consensus        57 ~~~~~~l~~~la~~~g~~---~~v~~~sGt~A~~~~l~~~----~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~  129 (421)
T 2ctz_A           57 NPTVDVLEKRLAALEGGK---AALATASGHAAQFLALTTL----AQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTS  129 (421)
T ss_dssp             CHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHH----CCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECC
T ss_pred             ChHHHHHHHHHHHHhCCC---ceEEecCHHHHHHHHHHHH----hCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEEC
Confidence            356678999999999986   3355555699999999988    78999999999999998887766667789999999 


Q ss_pred             eCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCC-cCCcccccCCCCCccEEEec
Q 017640          189 NLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQ-SVPHMVVDVQGLDADFLVAS  267 (368)
Q Consensus       189 ~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~-~~~~~~~~~~~~~~d~~~~s  267 (368)
                      +.+     |+++|++++++++++|++++++||+|.+.|+++|.++|++||+++|+|++| +.+.. ......++|++++|
T Consensus       130 ~~~-----d~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~-~~~~~~~~Di~~~s  203 (421)
T 2ctz_A          130 REE-----RPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYL-LRPLAWGAALVTHS  203 (421)
T ss_dssp             TTC-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTS-CCGGGGTCSEEEEE
T ss_pred             CCC-----CHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccc-CCccccCCeEEEEC
Confidence            765     899999999999999999999999999999999999999999999999999 87642 12224579999999


Q ss_pred             CcCcCCCCc--ceEEEEc
Q 017640          268 SHKMCGPTG--IGFLFGK  283 (368)
Q Consensus       268 ~~K~~g~~G--~G~l~~~  283 (368)
                      +||++|++|  +|++++.
T Consensus       204 ~~K~l~~~g~~~G~~~~~  221 (421)
T 2ctz_A          204 LTKWVGGHGAVIAGAIVD  221 (421)
T ss_dssp             TTTTTTCSSCCCCEEEEE
T ss_pred             CcccccCCCCcEEEEEEe
Confidence            999887655  6766664

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.91  E-value=8.1e-24  Score=196.56  Aligned_cols=206  Identities=17%  Similarity=0.196  Sum_probs=153.6

Q ss_pred             CCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHH
Q 017640           66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV  145 (368)
Q Consensus        66 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~  145 (368)
                      ..+|+|+.+....+++.+.+++.+...    .    ...  +.......++|+++++++|.+   ++++++|+++++.++
T Consensus         3 ~~~i~~~~~~~~~p~~~~~~a~~~~~~----~----~~~--y~~~~~~~~l~~~la~~~g~~---~~~~~~~gt~a~~~~   69 (347)
T 1jg8_A            3 HMMIDLRSDTVTKPTEEMRKAMAQAEV----G----DDV--YGEDPTINELERLAAETFGKE---AALFVPSGTMGNQVS   69 (347)
T ss_dssp             --CEECSCGGGCCCCHHHHHHHHTCCC----C----CGG--GTCCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHH
T ss_pred             ceEEEeccccCCCCCHHHHHHHhcCCC----C----Ccc--cCCChHHHHHHHHHHHHhCCc---eEEEecCcHHHHHHH
Confidence            356899999888888888888754321    0    001  111234568999999999985   678888999999999


Q ss_pred             HHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc------CceEEEEccccc
Q 017640          146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR------KTKLVVIHHISN  219 (368)
Q Consensus       146 ~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~~n  219 (368)
                      +.++    +++||+|++++|+|.+.+.. ...++..|++++.+ .++++.+|+++|++++++      ++++|++++++|
T Consensus        70 ~~~~----~~~gd~Vl~~~~~~~~~~~~-~~~~~~~g~~~~~v-~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~n  143 (347)
T 1jg8_A           70 IMAH----TQRGDEVILEADSHIFWYEV-GAMAVLSGVMPHPV-PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHN  143 (347)
T ss_dssp             HHHH----CCTTCEEEEETTCHHHHSST-THHHHHTCCEEEEE-CEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBT
T ss_pred             HHHh----cCCCCEEEEcCcchhhhccc-cchhhccCeEEEEe-cCCCCccCHHHHHHHhccccccccCceEEEEecccc
Confidence            9888    78999999999988764321 12345679999988 556677899999999975      689999999999


Q ss_pred             cc-ccccC---HHHHHHHHHhcCCEEEEecCCcCCcc---cccCCC--CCccEEEecCcCcCCCCcce-EEEEccccccc
Q 017640          220 ML-ASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVDVQG--LDADFLVASSHKMCGPTGIG-FLFGKSDLLSA  289 (368)
Q Consensus       220 ~t-G~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~---~~~~~~--~~~d~~~~s~~K~~g~~G~G-~l~~~~~li~~  289 (368)
                      || |.++|   +++|.++|++||+++++|++|..+..   ..+...  .+.|.++.|+||.+|++ .| +++.++++++.
T Consensus       144 pt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~-~G~~~~~~~~~~~~  222 (347)
T 1jg8_A          144 RSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAP-VGSVVVGDRDFIER  222 (347)
T ss_dssp             TTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCS-SCEEEEECHHHHHH
T ss_pred             ccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCCC-ceEEEEcCHHHHHH
Confidence            99 99998   46888999999999999999854211   111111  25788888999988754 45 56677777766


Q ss_pred             CC
Q 017640          290 MP  291 (368)
Q Consensus       290 l~  291 (368)
                      +.
T Consensus       223 ~~  224 (347)
T 1jg8_A          223 AR  224 (347)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.90  E-value=3.5e-22  Score=188.70  Aligned_cols=262  Identities=16%  Similarity=0.193  Sum_probs=183.3

Q ss_pred             CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCC---
Q 017640           76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLS---  152 (368)
Q Consensus        76 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~---  152 (368)
                      ...+++.+.+++.+.+....   +    .    ..+...++++.+++++|.+   ++++++|+|+|+..++.++...   
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~---~----~----~~~~~~~l~~~la~~~~~~---~~i~~~sGt~a~~~al~~~~~~~~~   75 (390)
T 3b8x_A           10 SSTWDDLEYKAIQSVLDSKM---F----T----MGEYVKQYETQFAKTFGSK---YAVMVSSGSTANLLMIAALFFTKKP   75 (390)
T ss_dssp             CCCCCHHHHHHHHHHHHHTC---C----S----SCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHTTSSSSC
T ss_pred             CCCCCHHHHHHHHHHHHcCC---C----C----CChHHHHHHHHHHHHHCCC---cEEEECCHHHHHHHHHHHHHhhhhc
Confidence            34678899999988886521   1    1    1345668999999999986   6788888899999999987210   


Q ss_pred             CCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC-CCCCHHHHHHhcccCceEEEEcccccccccccCHHHHH
Q 017640          153 NLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV  231 (368)
Q Consensus       153 ~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~  231 (368)
                      .+++||+|+++.++|+++...+    +..|++++.++++++ +.+|+++|++++++++++|++++   ++|...|+++|.
T Consensus        76 ~~~~g~~Vi~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~~g~~~~~~~i~  148 (390)
T 3b8x_A           76 RLKKGDEIIVPAVSWSTTYYPL----QQYGLRVKFVDIDINTLNIDIESLKEAVTDSTKAILTVN---LLGNPNNFDEIN  148 (390)
T ss_dssp             SCCTTCEEEEESSSCHHHHHHH----HHTTCEEEEECBCTTTCSBCHHHHHHHCCTTEEEEEEEC---GGGCCCCHHHHH
T ss_pred             CCCCcCEEEECCCCcHHHHHHH----HHcCCEEEEEecCccccCcCHHHHHHHhCcCCeEEEEEC---CccChhhHHHHH
Confidence            1678999999999999976544    456999999999876 89999999999998999999874   578889999999


Q ss_pred             HHHHhcCCEEEEecCCcCCcccccCCCCCc--cEEEecC--cC-cCCCCcceEEEEcc-cccccCCCcccCC--ccee--
Q 017640          232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDA--DFLVASS--HK-MCGPTGIGFLFGKS-DLLSAMPPFLGGG--EMIS--  301 (368)
Q Consensus       232 ~l~~~~g~~li~D~a~~~~~~~~~~~~~~~--d~~~~s~--~K-~~g~~G~G~l~~~~-~li~~l~~~~~g~--~~~~--  301 (368)
                      ++|++||+++|+|++|+.|... +....+.  |+.++|+  +| +.++.| |++++++ ++.+.+++...++  ....  
T Consensus       149 ~l~~~~~~~li~D~a~~~g~~~-~~~~~g~~~~~~~~s~~~~k~~~~g~g-G~~~~~~~~l~~~~~~~~~~g~~~~~~~~  226 (390)
T 3b8x_A          149 KIIGGRDIILLEDNCESMGATF-NNKCAGTFGLMGTFSSFYSNHIATMEG-GCIVTDDEEIYHILLCIRAHGWTRNLPKK  226 (390)
T ss_dssp             HHHTTSCCEEEEECTTCTTCEE-TTEETTSSSSEEEEECCTTSSSCSSSC-EEEEESCHHHHHHHHHHTBTTBSTTSCSE
T ss_pred             HHHHHcCCEEEEECcCcccCEE-CCcccccccceEEEEccCCCCCccCCc-eEEEeCCHHHHHHHHHHHhcCCCcccccc
Confidence            9999999999999999988764 4433333  5555442  34 444455 9999887 5655555433322  1100  


Q ss_pred             -ecc--cCCCCC----CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          302 -DVF--LDHSTF----ADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       302 -~~~--~~~~~~----~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                       ...  .....+    ......+..++.++...+++.. ++.     ++.+.++.+++++++.+.|.+++|+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~-l~~-----l~~~~~~~~~~~~~l~~~L~~~~~~  292 (390)
T 3b8x_A          227 NKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQ-LKK-----LPRFISVRRKNAEYFLDKFKDHPYL  292 (390)
T ss_dssp             ETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHH-HHH-----HHHHHHHHHHHHHHHHHHHTTCSSE
T ss_pred             ccccccccccccccccceeccccccCcCHHHHHHHHHH-HHH-----HHHHHHHHHHHHHHHHHHhcCCCCc
Confidence             000  000000    0011123334666766665543 433     4567888999999999999887664

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.90  E-value=6.2e-23  Score=197.86  Aligned_cols=166  Identities=23%  Similarity=0.260  Sum_probs=141.9

Q ss_pred             HHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeC
Q 017640          111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL  190 (368)
Q Consensus       111 ~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~  190 (368)
                      ...+++++++++++|.+   ++++++|+++|+..++. +    +++||+|++.++.|++....+...++..|++++.++.
T Consensus       133 ~~~~~l~~~la~~~g~~---~~i~~~sGt~al~~~l~-~----~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~  204 (464)
T 1ibj_A          133 PTRDALESLLAKLDKAD---RAFCFTSGMAALSAVTH-L----IKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT  204 (464)
T ss_dssp             HHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHT-T----SCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECT
T ss_pred             HHHHHHHHHHHHHhCCC---eEEEECCHHHHHHHHHH-H----hCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCC
Confidence            46778999999999975   67777888899988774 4    7899999999999998776666666778999999997


Q ss_pred             CCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcc--cccCCCCCccEEEecC
Q 017640          191 NDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM--VVDVQGLDADFLVASS  268 (368)
Q Consensus       191 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~--~~~~~~~~~d~~~~s~  268 (368)
                      +     |+++|++++++++++|++++++||||.++|+++|.++|++||+++|+|++|+.|..  +++   ++.|+++.|+
T Consensus       205 ~-----d~~~l~~~i~~~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~~~~~~---~~~div~~S~  276 (464)
T 1ibj_A          205 T-----KLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLE---LGADIVMHSA  276 (464)
T ss_dssp             T-----SHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGGG---TTCSEEEEET
T ss_pred             C-----CHHHHHHHhccCceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCcccccCChhh---cCCEEEEECC
Confidence            5     89999999999999999999999999999999999999999999999999997754  332   5799999999


Q ss_pred             cCcCC-CCc--ceEEEEcc-cccccCCC
Q 017640          269 HKMCG-PTG--IGFLFGKS-DLLSAMPP  292 (368)
Q Consensus       269 ~K~~g-~~G--~G~l~~~~-~li~~l~~  292 (368)
                      ||+++ +.|  +|++++++ ++++.+.+
T Consensus       277 sK~~~g~~Gl~~G~l~~~~~~l~~~l~~  304 (464)
T 1ibj_A          277 TKFIAGHSDVMAGVLAVKGEKLAKEVYF  304 (464)
T ss_dssp             TTTTTCSSCCCCEEEEECSHHHHHHHHH
T ss_pred             cccccCCCCCcEEEEEEChHHHHHHHHH
Confidence            99765 556  49999986 67666653

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.90  E-value=3.9e-23  Score=199.58  Aligned_cols=261  Identities=13%  Similarity=0.083  Sum_probs=170.5

Q ss_pred             CCCCCcHHHHHHHHHHHHHhh--ccCCCCcchhhHHH-HHHHHHHHHHHHHHcCCCCCC--cEEEeCCHHHHHHHHHHHc
Q 017640           75 ATSQKPIAVLKALQNYYEAYN--SNVHRGIHFLSAKA-TDEYELARKKVAAFINASDSG--EIVFTKNATEAINLVAYSW  149 (368)
Q Consensus        75 ~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~r~~la~~~~~~~~~--~v~~t~g~t~a~~~~~~~~  149 (368)
                      +...+++.|++++...+...+  ++|.. .+..+... .++.+..++.+++++|++.++  ..++++|+|+|+..++.++
T Consensus        62 s~n~~~~~V~eA~~~~l~~~y~~G~~g~-r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al  140 (490)
T 2a7v_A           62 SENFCSRAALEALGSCLNNKYSEGYPGK-RYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTAL  140 (490)
T ss_dssp             TCCCCCHHHHHHHTSGGGTCCCCC-------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHcCCCccCCCcc-cccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHH
Confidence            555689999999988776533  33432 22222222 234446779999999998642  2356678899999999998


Q ss_pred             cCCCCCCCCEEEEcCCCCcccHHHHH----HHHHHcCCEE--EEEeCC-CCCCCCHHHHHHhccc-CceEEEEccccccc
Q 017640          150 GLSNLKSGDEVILTVAEHHSAIVPWQ----LVAQKTGANL--KFLNLN-DDESPDLDKLKEMLSR-KTKLVVIHHISNML  221 (368)
Q Consensus       150 ~~~~~~~gd~vl~~~~~~~s~~~~~~----~~~~~~g~~v--~~v~~~-~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~t  221 (368)
                          +++||+|++.+++|.++.....    ..+...|..+  +.++++ +++.+|+++|++++.+ ++++|+++.++|| 
T Consensus       141 ----~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~~~klIi~~~s~~~-  215 (490)
T 2a7v_A          141 ----LQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYA-  215 (490)
T ss_dssp             ----CCSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC-
T ss_pred             ----cCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHHHHHHhhcCCcEEEEcCCCCC-
Confidence                8999999999998876432111    0122335443  444444 4689999999999864 7899988887776 


Q ss_pred             ccccCHHHHHHHHHhcCCEEEEecCCcCCcc-----cccCCCCCccEEEecCcCcC-CCCcceEEEEcccccc-------
Q 017640          222 ASILPIEEIVHWSHDVGAKVLVDACQSVPHM-----VVDVQGLDADFLVASSHKMC-GPTGIGFLFGKSDLLS-------  288 (368)
Q Consensus       222 G~~~~l~~i~~l~~~~g~~li~D~a~~~~~~-----~~~~~~~~~d~~~~s~~K~~-g~~G~G~l~~~~~li~-------  288 (368)
                       ...|+++|.++|++||+++++|++|+.|..     +..+  .+.|++++|+||.+ ||.| |+++++++++.       
T Consensus       216 -~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~--~~aDiv~~S~hK~l~Gp~G-G~i~~~~~~~~~~~~~~~  291 (490)
T 2a7v_A          216 -RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPF--KHADIVTTTTHKTLRGARS-GLIFYRKGVKAVDPKTGR  291 (490)
T ss_dssp             -SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGG--GTCSEEEEESSGGGCSCSC-EEEEEECSEEEEETTTEE
T ss_pred             -CcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCC--CCCCEEEECCcccCccccc-hheeeccchhcccccccc
Confidence             467999999999999999999999975432     2222  25899999999966 5665 99999886431       


Q ss_pred             --------cCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Q 017640          289 --------AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVI  360 (368)
Q Consensus       289 --------~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l  360 (368)
                              .++...                    .....|+++...++++..++........+...++..++++++.+.|
T Consensus       292 ~~~~~l~~~i~~~~--------------------~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L  351 (490)
T 2a7v_A          292 EIPYTFEDRINFAV--------------------FPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADAL  351 (490)
T ss_dssp             EEECCCHHHHHHHH--------------------TTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHh--------------------cccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence                    111111                    1112467899999999888887764445778889999999999999


Q ss_pred             HhhcCC
Q 017640          361 QERHNT  366 (368)
Q Consensus       361 ~~~~g~  366 (368)
                      .+. |+
T Consensus       352 ~~~-G~  356 (490)
T 2a7v_A          352 LER-GY  356 (490)
T ss_dssp             HHT-TC
T ss_pred             HHc-Cc
Confidence            875 54

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=99.83  E-value=1.4e-25  Score=212.21  Aligned_cols=259  Identities=14%  Similarity=0.104  Sum_probs=186.1

Q ss_pred             CeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----C--CCCCCcEEEeCCHH
Q 017640           67 KLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----N--ASDSGEIVFTKNAT  139 (368)
Q Consensus        67 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~--~~~~~~v~~t~g~t  139 (368)
                      +++.|..+... ++++.+.+++.+.+...       .+.+..  .  ..++|+.+++++    |  .++ ++|++|+|++
T Consensus        32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-------~~~y~~--~--~~~l~~~la~~l~~~~g~~~~~-~~v~~~~g~~   99 (392)
T 3b1d_A           32 QLLPAWIADMDFEVMPEVKQAIHDYAEQL-------VYGYTY--A--SDELLQAVLDWEKSEHQYSFDK-EDIVFVEGVV   99 (392)
Confidence            56777777765 56788889888877531       000111  1  345666666655    4  333 4899999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC-C--CCCCCHHHHHHhcc-cCceEEEEc
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN-D--DESPDLDKLKEMLS-RKTKLVVIH  215 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~-~--~~~~d~~~l~~~l~-~~~~~v~~~  215 (368)
                      +++.+++.++    .++||+|++.+|.|++...    .++..|++++.++.+ +  ++.+|++.|+++++ .++++|+++
T Consensus       100 ~a~~~~~~~~----~~~gd~vl~~~p~~~~~~~----~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~  171 (392)
T 3b1d_A          100 PAISIAIQAF----TKEGEAVLINSPVYPPFAR----SVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLC  171 (392)
Confidence            9999999988    7899999999999988554    344568899999885 3  24589999999997 678999999


Q ss_pred             ccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc------cc-cCCC--CCccEEEecCcCcCCCCc--ceEEE
Q 017640          216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM------VV-DVQG--LDADFLVASSHKMCGPTG--IGFLF  281 (368)
Q Consensus       216 ~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~------~~-~~~~--~~~d~~~~s~~K~~g~~G--~G~l~  281 (368)
                      +++||||.++|   +++|.++|++||+++|+|++|+....      ++ .+..  .+.++++.|++|.+|.+|  +|+++
T Consensus       172 ~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~  251 (392)
T 3b1d_A          172 NPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAI  251 (392)
Confidence            99999999998   88999999999999999999985321      11 1221  456789999999998667  89999


Q ss_pred             Ecc-cccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Q 017640          282 GKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVI  360 (368)
Q Consensus       282 ~~~-~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l  360 (368)
                      +++ ++++.+......+                    ..++++.....++..+++... ..++.++++..++.+++.+.|
T Consensus       252 ~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~l  310 (392)
T 3b1d_A          252 IENPTLCAQFKHQQLVN--------------------NHHEVSSLGYIATETAYRYGK-PWLVALKAVLEENIQFAVEYF  310 (392)
Confidence            875 4777766443211                    112445555566666665322 235677777888888888887


Q ss_pred             Hh-hcCC
Q 017640          361 QE-RHNT  366 (368)
Q Consensus       361 ~~-~~g~  366 (368)
                      .+ .+++
T Consensus       311 ~~~~~~~  317 (392)
T 3b1d_A          311 AQEAPRL  317 (392)
Confidence            76 4554

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.90  E-value=1.9e-23  Score=205.19  Aligned_cols=210  Identities=16%  Similarity=0.116  Sum_probs=154.0

Q ss_pred             CeEEeccCCCCCCcHHHHHHHHHHHHHhh-ccCCCCcchhhHHHHHHHHHHHHHHHHHc----C--CC--CCCcEEEeCC
Q 017640           67 KLVYLDNAATSQKPIAVLKALQNYYEAYN-SNVHRGIHFLSAKATDEYELARKKVAAFI----N--AS--DSGEIVFTKN  137 (368)
Q Consensus        67 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~--~~--~~~~v~~t~g  137 (368)
                      .++.|+.+.++..++.+++++.+.+.... ..+..       +..    ++|+.+++++    +  ..  ++++|++|+|
T Consensus       104 ~~i~l~~g~~~~~~~~~v~a~~~~~~~~~y~~~~~-------g~~----~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G  172 (533)
T 3f6t_A          104 DAVNYCHTELGLNRDKVVAEWVNGAVANNYPVPDR-------CLV----NTEKIINYFLQELSYKDANLAEQTDLFPTEG  172 (533)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHTCSCCSSSS-------CCH----HHHHHHHHHHHHHHTTTCCCGGGEEEEEEEH
T ss_pred             hheeccCCCCCcCCcHHHHHHHHHHHhCCCCCCcc-------cHH----HHHHHHHHHHHHhcCCCCCCCCcceEEEECC
Confidence            46778877777667777777766665311 11111       112    4555555554    2  22  2248999999


Q ss_pred             HHHHHHHHHHHcc-CCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC----CCCCCCHHHHHHhcccCceEE
Q 017640          138 ATEAINLVAYSWG-LSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN----DDESPDLDKLKEMLSRKTKLV  212 (368)
Q Consensus       138 ~t~a~~~~~~~~~-~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~----~~~~~d~~~l~~~l~~~~~~v  212 (368)
                      +++++..++.++. ...+++||+|++.+|+|++.    ...++..|.+++.++++    .++.+|+++|++++++++++|
T Consensus       173 ~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~----~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~~k~v  248 (533)
T 3f6t_A          173 GTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPY----LRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKAL  248 (533)
T ss_dssp             HHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHH----HTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCTTEEEE
T ss_pred             HHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHH----HHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCCCCeEE
Confidence            9999999999710 00178999999999998874    34445668999999985    347889999999999999999


Q ss_pred             EEcccccccccccCHH---HHHHHHH-hcCCEEEEecCCcCCcc---cccCCCCCccEEEecCcCcCCCCc--ceEEEEc
Q 017640          213 VIHHISNMLASILPIE---EIVHWSH-DVGAKVLVDACQSVPHM---VVDVQGLDADFLVASSHKMCGPTG--IGFLFGK  283 (368)
Q Consensus       213 ~~~~~~n~tG~~~~l~---~i~~l~~-~~g~~li~D~a~~~~~~---~~~~~~~~~d~~~~s~~K~~g~~G--~G~l~~~  283 (368)
                      ++++++||||.++|.+   +|+++|+ +||+++|+|++|+....   ++.....+.+++++|+||.+|++|  +|+++++
T Consensus       249 ~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~  328 (533)
T 3f6t_A          249 IVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTGWRLGVIALN  328 (533)
T ss_dssp             EEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGGGCEEEEEEE
T ss_pred             EEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCcccceEEEEEC
Confidence            9999999999999955   8888888 68999999999983211   110111246799999999999888  9999999


Q ss_pred             cc-----ccccCC
Q 017640          284 SD-----LLSAMP  291 (368)
Q Consensus       284 ~~-----li~~l~  291 (368)
                      ++     +++.+.
T Consensus       329 ~~~~~~~li~~l~  341 (533)
T 3f6t_A          329 EKNVFDDNIAHLD  341 (533)
T ss_dssp             SSCHHHHHHHTSC
T ss_pred             cHHHHHHHHHhcc
Confidence            88     666554

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.90  E-value=5.7e-22  Score=187.66  Aligned_cols=246  Identities=15%  Similarity=0.114  Sum_probs=176.2

Q ss_pred             EEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHH
Q 017640           69 VYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI  142 (368)
Q Consensus        69 i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~  142 (368)
                      .|+|...      .++.++.+.+++.+.+..+.. ... .+     ..+...++++.+++++|.   +++++|+|+++|+
T Consensus        41 ~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~-~~~-~~-----~~~~~~~l~~~la~~~g~---~~v~~~~gg~~a~  110 (397)
T 2ord_A           41 AYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIH-CSN-LF-----WNRPQMELAELLSKNTFG---GKVFFANTGTEAN  110 (397)
T ss_dssp             EEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSC-CCT-TS-----EEHHHHHHHHHHHHTTTS---CEEEEESSHHHHH
T ss_pred             EEEECCccccccccCCCCHHHHHHHHHHHHhccc-Ccc-cc-----CCHHHHHHHHHHHHhcCC---CeEEEeCCHHHHH
Confidence            4566532      345689999999998876421 111 11     135567899999999984   3899999999999


Q ss_pred             HHHHHHccCCCCC------C-CCEEEEcCCCCcccHHHHHHHHHHcCCE------------EEEEeCCCCCCCCHHHHHH
Q 017640          143 NLVAYSWGLSNLK------S-GDEVILTVAEHHSAIVPWQLVAQKTGAN------------LKFLNLNDDESPDLDKLKE  203 (368)
Q Consensus       143 ~~~~~~~~~~~~~------~-gd~vl~~~~~~~s~~~~~~~~~~~~g~~------------v~~v~~~~~~~~d~~~l~~  203 (368)
                      ..++.++    ..      + ++.|++.++.|++.....   ++..|.+            ++.++.+     |+++|++
T Consensus       111 ~~al~~~----~~~~~~~~~~~~~vi~~~~~yh~~~~~~---~~~~g~~~~~~~~~p~~~~~~~~~~~-----d~~~l~~  178 (397)
T 2ord_A          111 EAAIKIA----RKYGKKKSEKKYRILSAHNSFHGRTLGS---LTATGQPKYQKPFEPLVPGFEYFEFN-----NVEDLRR  178 (397)
T ss_dssp             HHHHHHH----HHHHHHHCTTCCEEEEEBTCCCCSSHHH---HHHSBCHHHHGGGCSCCTTEEEECTT-----CHHHHHH
T ss_pred             HHHHHHH----HHHhhcCCCCCceEEEEcCCcCCCchhh---hhccCChhhccccCCCCCCeeEecCC-----CHHHHHH
Confidence            9999886    32      3 578999999887754322   2334544            7777764     8999999


Q ss_pred             hcccCceEEEEccccccccc-ccC---HHHHHHHHHhcCCEEEEecCCc-CCcc--cccCCC--CCccEEEecCcCcCCC
Q 017640          204 MLSRKTKLVVIHHISNMLAS-ILP---IEEIVHWSHDVGAKVLVDACQS-VPHM--VVDVQG--LDADFLVASSHKMCGP  274 (368)
Q Consensus       204 ~l~~~~~~v~~~~~~n~tG~-~~~---l~~i~~l~~~~g~~li~D~a~~-~~~~--~~~~~~--~~~d~~~~s~~K~~g~  274 (368)
                      ++++++++|++++++||||. +++   +++|.++|++||+++|+|++|+ ++..  ++....  ..+|++  |++|.+++
T Consensus       179 ~l~~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~  256 (397)
T 2ord_A          179 KMSEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVL--TTAKGLGG  256 (397)
T ss_dssp             HCCTTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGT
T ss_pred             HhhcCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCCee--eeccccCC
Confidence            99989999999999999999 555   8899999999999999999997 2211  111111  236766  56798873


Q ss_pred             -CcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Q 017640          275 -TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWI  353 (368)
Q Consensus       275 -~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~  353 (368)
                       .++|+++++++++ .+++...+                     ...+.+....+++..+++.+.+   +.+.++.+++.
T Consensus       257 G~r~G~~~~~~~~~-~l~~~~~~---------------------~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~  311 (397)
T 2ord_A          257 GVPIGAVIVNERAN-VLEPGDHG---------------------TTFGGNPLACRAGVTVIKELTK---EGFLEEVEEKG  311 (397)
T ss_dssp             TSCCEEEEECSTTC-CCCTTSSC---------------------CSSTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHH
T ss_pred             CcCeEEEEEchHhc-ccCCCCcC---------------------CCCCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHH
Confidence             2399999999876 55432111                     1125677777778888887654   45678888888


Q ss_pred             HHHHHHHHhh
Q 017640          354 ICSIIVIQER  363 (368)
Q Consensus       354 ~~l~~~l~~~  363 (368)
                      +++.+.|++.
T Consensus       312 ~~l~~~L~~~  321 (397)
T 2ord_A          312 NYLMKKLQEM  321 (397)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888888765

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.90  E-value=5.9e-24  Score=203.13  Aligned_cols=259  Identities=11%  Similarity=0.118  Sum_probs=175.7

Q ss_pred             CeEEeccCCCC----CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHH
Q 017640           67 KLVYLDNAATS----QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI  142 (368)
Q Consensus        67 ~~i~l~~~~~~----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~  142 (368)
                      +++.|..+.+.    +.++.+.+++.+.+...  ..   ....++.......++|++++++++.+++ +|++|+|+++++
T Consensus        33 ~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~--~~---~~~~~Y~~~~G~~~lr~~ia~~~~~~~~-~i~~t~G~~~al  106 (422)
T 3d6k_A           33 LSLDLTRGKPSAEQLDLSNDLLSLPGGDFRTK--DG---VDCRNYGGLLGIADIRELWAEALGLPAD-LVVAQDGSSLNI  106 (422)
T ss_dssp             CCEECCCCSCCHHHHHTTGGGGGCSTTCCBCT--TC---CBTTSSCCSSCCHHHHHHHHHHHTCCGG-GEEECSSCHHHH
T ss_pred             CeEeCCCCCCChhhCCCcHHHHHHHHHHHhhc--cc---hhhhCCCCCCCCHHHHHHHHHHhCCChh-HEEEecchHHHH
Confidence            36788888774    44556666654331000  00   0000111122244899999999998765 999999999997


Q ss_pred             --HHHHHHccCCCCCC------------CCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc-
Q 017640          143 --NLVAYSWGLSNLKS------------GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-  207 (368)
Q Consensus       143 --~~~~~~~~~~~~~~------------gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~-  207 (368)
                        .+++.++    ..+            +|+|++.+|+|++..    ..++..|++++.+++++++ +|+++|++++++ 
T Consensus       107 ~l~~~~~~l----~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~----~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~~  177 (422)
T 3d6k_A          107 MFDLISWSY----TWGNNDSSRPWSAEEKVKWLCPVPGYDRHF----TITEHFGFEMINVPMTDEG-PDMGVVRELVKDP  177 (422)
T ss_dssp             HHHHHHHHH----HHCCTTCSSCGGGSSCCEEEEEESCCHHHH----HHHHHHTCEEEEEEEETTE-ECHHHHHHHHTST
T ss_pred             HHHHHHHHh----cCcccccccccccCCCCEEEEeCCccHHHH----HHHHHcCCEEEecCCCCCC-CCHHHHHHHHhcC
Confidence              6777776    333            457999999888754    4455669999999997766 899999999976 


Q ss_pred             CceEEE-EcccccccccccCHH---HHHHHHH-hcCCEEEEecCCcCCcc--------cc-c----CCCCCccEEEecCc
Q 017640          208 KTKLVV-IHHISNMLASILPIE---EIVHWSH-DVGAKVLVDACQSVPHM--------VV-D----VQGLDADFLVASSH  269 (368)
Q Consensus       208 ~~~~v~-~~~~~n~tG~~~~l~---~i~~l~~-~~g~~li~D~a~~~~~~--------~~-~----~~~~~~d~~~~s~~  269 (368)
                      ++++|+ +++++||||.++|.+   +|.++|+ +||+++|+|++|+....        ++ +    .+..+.+++++|+|
T Consensus       178 ~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S  257 (422)
T 3d6k_A          178 QVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTS  257 (422)
T ss_dssp             TEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEEST
T ss_pred             CCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChh
Confidence            788887 799999999999965   7888888 89999999999973111        11 1    12346789999999


Q ss_pred             CcCCCCc--ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH--HhCHHHH
Q 017640          270 KMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS--TIGMQKI  345 (368)
Q Consensus       270 K~~g~~G--~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~--~~g~~~i  345 (368)
                      |. +.+|  +||+++++++++.+......                     ...+.+.....++..+++...  ..-++.+
T Consensus       258 K~-~~~GlriG~~~~~~~l~~~l~~~~~~---------------------~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~  315 (422)
T 3d6k_A          258 KI-THAGSGVSFFASSKENIEWYASHANV---------------------RGIGPNKLNQLAHAQFFGDVAGLKAHMLKH  315 (422)
T ss_dssp             TT-SCTTSSCEEEECCHHHHHHHHHHHHH---------------------HCSCCCHHHHHHHHHHHCSHHHHHHHHHHH
T ss_pred             hh-cCcccceEEEEeCHHHHHHHHHHHHh---------------------hcCCCCHHHHHHHHHHHhCcchHHHHHHHH
Confidence            98 4446  99999999888776643211                     112456666666666664311  0124555


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 017640          346 HAYEVKWIICSIIVIQE  362 (368)
Q Consensus       346 ~~~~~~l~~~l~~~l~~  362 (368)
                      +++.++..+++.+.|.+
T Consensus       316 ~~~~~~~~~~l~~~L~~  332 (422)
T 3d6k_A          316 AASLAPKFERVLEILDS  332 (422)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            66666666666666654

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.90  E-value=2.2e-24  Score=204.15  Aligned_cols=270  Identities=11%  Similarity=0.013  Sum_probs=175.5

Q ss_pred             CCCCcccccccCCCCeEEeccCCCCC-CcHHHHHHHHHHHHHhhccCCCCcchhhHHH-HHHHHHHHHHHHHHcCC----
Q 017640           53 PDFPILHQEVYGSKKLVYLDNAATSQ-KPIAVLKALQNYYEAYNSNVHRGIHFLSAKA-TDEYELARKKVAAFINA----  126 (368)
Q Consensus        53 ~~f~~~~~~~~~~~~~i~l~~~~~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~la~~~~~----  126 (368)
                      +.||......  ++++++|+.+.... .++.+.+++.+... .........|....+. .+...++|++++++++.    
T Consensus        11 ~~~~~~~~~~--~~~~i~l~~g~p~~~~~~~~~~~~~~~~~-~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~~~g~~   87 (391)
T 3bwn_A           11 EKISNKNIPM--SDFVVNLDHGDPTAYEEYWRKMGDRCTVT-IRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHGVVGNA   87 (391)
T ss_dssp             -------CCT--TTSCEECSSCCCGGGHHHHHHTGGGSCEE-ECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHHHHCSB
T ss_pred             cccCCCCccC--CCCeeEcCCCCCCCCCCHHHHHhHHHHhh-cCccchhhcCCCCCCcccccCHHHHHHHHHHHHhcCCC
Confidence            3455443222  36789999988763 34344444322110 0000001111111111 01114788888888873    


Q ss_pred             -CCCCcEEEeCCHHHHHHHHHHHccCCCCCCCC----EEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHH
Q 017640          127 -SDSGEIVFTKNATEAINLVAYSWGLSNLKSGD----EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKL  201 (368)
Q Consensus       127 -~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd----~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l  201 (368)
                       .++++|++|+|+++++.+++.++    +++||    +|++.+|+|++    +...++..|++++.++++.++.      
T Consensus        88 ~~~~~~i~~t~G~~~al~~~~~~l----~~~Gd~~~~~Vlv~~P~y~~----~~~~~~~~g~~~~~~~~d~~~l------  153 (391)
T 3bwn_A           88 ATEDRYIVVGTGSTQLCQAAVHAL----SSLARSQPVSVVAAAPFYST----YVEETTYVRSGMYKWEGDAWGF------  153 (391)
T ss_dssp             CCSSSEEEEEEHHHHHHHHHHHHH----HHTSSSSSEEEEECSSCCTH----HHHHHHTTCBTTEEEEEESTTC------
T ss_pred             CCCCCeEEEeCChHHHHHHHHHHh----cCCCCCCcceEEEcCCCchh----HHHHHHHcCCeEEEecCCHHHc------
Confidence             23348999999999999999998    78999    99999999887    4455566799988888764322      


Q ss_pred             HHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcc-cccCCCCCccEEEecCcCcCCCCc--ce
Q 017640          202 KEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM-VVDVQGLDADFLVASSHKMCGPTG--IG  278 (368)
Q Consensus       202 ~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~-~~~~~~~~~d~~~~s~~K~~g~~G--~G  278 (368)
                      +   .+++++|++++++||||.+++  +|++.++.+++++|+|++|..+.. ++.. ..+.+++++|+||.||++|  +|
T Consensus       154 ~---~~~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~De~y~~~~~~~l~~-~~~~~i~~~S~SK~~g~~GlRiG  227 (391)
T 3bwn_A          154 D---KKGPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHDFAYYWPHYTPITR-RQDHDIMLFTFSKITGHAGSRIG  227 (391)
T ss_dssp             C---CCSCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEECTTCSTTTSCCCC-CBCCSEEEEEHHHHHSCGGGCEE
T ss_pred             C---CCCCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEeCCCCCCCCCcccc-CCCCeEEEEechhhcCCCccceE
Confidence            1   257899999999999999997  554422223499999999985432 2322 3468899999999999999  69


Q ss_pred             EEEE-cccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH---------HhCHHHHHHH
Q 017640          279 FLFG-KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS---------TIGMQKIHAY  348 (368)
Q Consensus       279 ~l~~-~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~---------~~g~~~i~~~  348 (368)
                      |+++ ++++++.+......                     ...+.+...+.++..+++...         +..++.++++
T Consensus       228 ~~~~~~~~l~~~l~~~~~~---------------------~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~  286 (391)
T 3bwn_A          228 WALVKDKEVAKKMVEYIIV---------------------NSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREM  286 (391)
T ss_dssp             EEEECCHHHHHHHHHHHHH---------------------HHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHH
T ss_pred             EEEecCHHHHHHHHHHhcc---------------------cccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHH
Confidence            9998 77887766543310                     012566777777777776543         2236788899


Q ss_pred             HHHHHHHHHHHHHhhcCC
Q 017640          349 EVKWIICSIIVIQERHNT  366 (368)
Q Consensus       349 ~~~l~~~l~~~l~~~~g~  366 (368)
                      .++..+++.+.|.+++++
T Consensus       287 ~~~~~~~l~~~L~~~~~~  304 (391)
T 3bwn_A          287 MKNRWEKLREVVKESDAF  304 (391)
T ss_dssp             HHHHHHHHHHHHHTCSSE
T ss_pred             HHHHHHHHHHHHHhCCCc
Confidence            999999999999886543

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.90  E-value=4.9e-22  Score=190.17  Aligned_cols=268  Identities=8%  Similarity=-0.004  Sum_probs=182.7

Q ss_pred             CeEEeccCCC------CCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHH
Q 017640           67 KLVYLDNAAT------SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE  140 (368)
Q Consensus        67 ~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~  140 (368)
                      +..|+|....      ++.++.+.+++.+.+.....++.. .+.     .+...++++.++++++.+.+ +|+||+|+++
T Consensus        42 g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~-~~~-----~~~~~~l~~~la~~~~~~~~-~v~~~~ggte  114 (429)
T 1s0a_A           42 GRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFG-GIT-----HAPAIELCRKLVAMTPQPLE-CVFLADSGSV  114 (429)
T ss_dssp             SCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCS-SEE-----CHHHHHHHHHHHHHSCTTCC-EEEEESSHHH
T ss_pred             CCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccccccc-ccC-----CHHHHHHHHHHHHhCCCCCC-EEEEeCCHHH
Confidence            4467876432      346899999999998764322111 111     23345788899999987654 9999999999


Q ss_pred             HHHHHHHHccCCCC----CCCCEEEEcCCCCcccHHHHHHHHH-------Hc---CCEEEEEeCCC-----C-CCCCHHH
Q 017640          141 AINLVAYSWGLSNL----KSGDEVILTVAEHHSAIVPWQLVAQ-------KT---GANLKFLNLND-----D-ESPDLDK  200 (368)
Q Consensus       141 a~~~~~~~~~~~~~----~~gd~vl~~~~~~~s~~~~~~~~~~-------~~---g~~v~~v~~~~-----~-~~~d~~~  200 (368)
                      |+..++.++.. ..    ++|++|++.+|.|++..........       ..   ...++.++.+.     + +.+|+++
T Consensus       115 a~~~ai~~~~~-~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  193 (429)
T 1s0a_A          115 AVEVAMKMALQ-YWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVG  193 (429)
T ss_dssp             HHHHHHHHHHH-HHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHH
T ss_pred             HHHHHHHHHHH-HhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHH
Confidence            99999986510 01    2589999999998875432222110       00   11344555432     2 3579999


Q ss_pred             HHHhcc---cCceEEEEccc-ccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEEec
Q 017640          201 LKEMLS---RKTKLVVIHHI-SNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVAS  267 (368)
Q Consensus       201 l~~~l~---~~~~~v~~~~~-~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s  267 (368)
                      |+++++   +++++|+++.+ +||||.+.|    +++|.++|++||+++|+|++|+ ++..    .++.....+|+++  
T Consensus       194 l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~~~~~~d~~t--  271 (429)
T 1s0a_A          194 FARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILC--  271 (429)
T ss_dssp             HHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--
T ss_pred             HHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhhcCCCCCEEE--
Confidence            999987   46778888777 899998877    9999999999999999999997 5432    1222234577764  


Q ss_pred             CcCcCCC--CcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 017640          268 SHKMCGP--TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI  345 (368)
Q Consensus       268 ~~K~~g~--~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i  345 (368)
                      ++|.+++  .++|++++++++++.+.+...++.                .+....+.|..+++++.++++.+.+   +.+
T Consensus       272 ~sK~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~----------------~~~~t~~~n~~~~~a~~aal~~~~~---~~~  332 (429)
T 1s0a_A          272 LGKALTGGTMTLSATLTTREVAETISNGEAGCF----------------MHGPTFMGNPLACAAANASLAILES---GDW  332 (429)
T ss_dssp             ECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSC----------------SCCCTTTTCHHHHHHHHHHHHHHHT---CHH
T ss_pred             ecccccCCCccceEEEeCHHHHHHhhcCCCccc----------------ccCCCCCCCHHHHHHHHHHHHHHHh---CCH
Confidence            5696664  468999999988776543210000                0011224688888888899988776   246


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 017640          346 HAYEVKWIICSIIVIQER  363 (368)
Q Consensus       346 ~~~~~~l~~~l~~~l~~~  363 (368)
                      .++..++.+++.+.|.++
T Consensus       333 ~~~~~~~~~~l~~~L~~l  350 (429)
T 1s0a_A          333 QQQVADIEVQLREQLAPA  350 (429)
T ss_dssp             HHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            788888899999988775

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.90  E-value=6.1e-22  Score=186.34  Aligned_cols=250  Identities=16%  Similarity=0.116  Sum_probs=174.2

Q ss_pred             CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHH-HHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCC
Q 017640           78 QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKV-AAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKS  156 (368)
Q Consensus        78 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l-a~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~  156 (368)
                      +.++.+.+++.+.+....-.+      .    ....+++++++ ++++|. . .++++++|+|+|+..++.++   .+++
T Consensus        13 ~~~~~i~~a~~~~~~~~~~~~------~----~~~~~~l~~~~~a~~~g~-~-~~~v~~~sgt~al~~al~~l---~~~~   77 (377)
T 3ju7_A           13 VPVIEYLDELKEIDASHIYTN------Y----GPINQRFEQTIMSGFFQN-R-GAVTTVANATLGLMAAIQLK---KRKK   77 (377)
T ss_dssp             CCGGGGHHHHHHHHHHTCCSS------S----CHHHHHHHHHHHHHTSTT-C-SEEEEESCHHHHHHHHHHHH---SCTT
T ss_pred             CCcHHHHHHHHHHHHcCCccc------C----CHHHHHHHHHHHHHHhCC-C-CeEEEeCCHHHHHHHHHHHc---CCCC
Confidence            456778888888876521111      0    13356899999 999993 2 37899999999999999987   4789


Q ss_pred             CCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC-CCCCCCHHHHHHhc-ccC--ceEEEEcccccccccccCHHHHHH
Q 017640          157 GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN-DDESPDLDKLKEML-SRK--TKLVVIHHISNMLASILPIEEIVH  232 (368)
Q Consensus       157 gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~l-~~~--~~~v~~~~~~n~tG~~~~l~~i~~  232 (368)
                      ||+|++++++|+++...    ++..|+++++++++ .++.+|++++++++ +++  +++|+   ++|++|...|+++|.+
T Consensus        78 Gd~Vi~~~~~~~~~~~~----~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~~~~i~~  150 (377)
T 3ju7_A           78 GKYALMPSFTFPATPLA----AIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMNLEEYEE  150 (377)
T ss_dssp             CCEEEEESSSCTHHHHH----HHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCCCHHHHH
T ss_pred             cCEEEECCCCcHHHHHH----HHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEE---EECCCCCccCHHHHHH
Confidence            99999999999986543    45669999999998 46899999999998 566  88887   4567999999999999


Q ss_pred             HHHhcCCEEEEecCCcCCcccccCCCC---CccEEEec--CcCcCCCCcceEEEEcc-cccccCCCcccCCcceeecccC
Q 017640          233 WSHDVGAKVLVDACQSVPHMVVDVQGL---DADFLVAS--SHKMCGPTGIGFLFGKS-DLLSAMPPFLGGGEMISDVFLD  306 (368)
Q Consensus       233 l~~~~g~~li~D~a~~~~~~~~~~~~~---~~d~~~~s--~~K~~g~~G~G~l~~~~-~li~~l~~~~~g~~~~~~~~~~  306 (368)
                      +|+ ||+++|+|++|++|.. .+....   ..|+.+.|  .+|.+++...|+++.++ ++.+.++.....+...      
T Consensus       151 la~-~~~~vi~D~a~a~g~~-~~~~~~g~~~~d~~~~S~~~~K~l~~g~gG~~~~~~~~l~~~~~~~~~~g~~~------  222 (377)
T 3ju7_A          151 LEK-KGVPVVVDAAPGFGLM-NGGMHYGQDFSGMIIYSFHATKPFGIGEGGLIYSKNEEDIQRIKRMGNFGFDT------  222 (377)
T ss_dssp             HHH-TTCCBEEECTTCTTCE-ETTEETTTTCSSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHTBTTBCT------
T ss_pred             HHh-cCCEEEEECCCccCCe-ECCEeccCCCCcEEEEECCCCCcCCCCCcEEEEECCHHHHHHHHHHHhcCCCC------
Confidence            999 9999999999998865 222112   14565555  57988863377777754 5555555443322210      


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcC
Q 017640          307 HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHN  365 (368)
Q Consensus       307 ~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g  365 (368)
                        .+......+..+..++...++    +..+  ..++...++.+++++++.+.|.++++
T Consensus       223 --~~~~~~~g~~~~~~~~~aa~~----~~~l--~~l~~~~~~~~~~~~~~~~~L~~~~~  273 (377)
T 3ju7_A          223 --NRECTMMGFNCKMSEYAAAIG----IATM--KKWDDKLKERTRISEWYKQLLQSNGL  273 (377)
T ss_dssp             --TSCBCSSCCBCCCCHHHHHHH----HHHH--HTHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             --CCceeeccccCCCCHHHHHHH----HHHH--HHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence              011111222233333332222    2222  24667778888899999999988754

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.89  E-value=5.8e-23  Score=194.59  Aligned_cols=216  Identities=18%  Similarity=0.190  Sum_probs=160.2

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHH-HHHcCCEEEEE
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLV-AQKTGANLKFL  188 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~-~~~~g~~v~~v  188 (368)
                      .+...++++.++++.|.+   .+++++|+++|+..+ ..+    +++||+|++.++.|++.+..+... .+..|++++++
T Consensus        66 ~p~~~~l~~~la~l~g~~---~~~~~~sG~~Ai~~~-~~l----~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v  137 (400)
T 3nmy_A           66 NPTRFAYERCVAALEGGT---RAFAFASGMAATSTV-MEL----LDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFV  137 (400)
T ss_dssp             CHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHH-HTT----SCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEE
T ss_pred             CHHHHHHHHHHHHHhCCC---CEEEecCHHHHHHHH-HHH----cCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEE
Confidence            456678999999999975   567777779999984 445    789999999999999888777766 67789999999


Q ss_pred             eCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecC
Q 017640          189 NLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASS  268 (368)
Q Consensus       189 ~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~  268 (368)
                      +.+     |++++++++++++++|++++++||||.+.|+++|.++|++||+++|+|++|+.+... .....++|+++.|+
T Consensus       138 ~~~-----d~~~l~~~i~~~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~-~~~~~g~div~~S~  211 (400)
T 3nmy_A          138 DLT-----DPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQ-RPLSLGADLVVHSA  211 (400)
T ss_dssp             CTT-----SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHC-CGGGGTCSEEEEET
T ss_pred             CCC-----CHHHHHHHhccCCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccC-ChhhcCCcEEEecC
Confidence            986     899999999999999999999999999999999999999999999999999854431 11235799999999


Q ss_pred             cCcCCCCc---ce-EEEE-cccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHH
Q 017640          269 HKMCGPTG---IG-FLFG-KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQ  343 (368)
Q Consensus       269 ~K~~g~~G---~G-~l~~-~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~  343 (368)
                      +|++|++|   .| ++++ ++++++.++......                     ..+.+....+   .++..++.  +.
T Consensus       212 sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~---------------------g~~~~~~~a~---~~l~~l~~--l~  265 (400)
T 3nmy_A          212 TKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSI---------------------GGVQGPFDSF---LALRGLKT--LP  265 (400)
T ss_dssp             TTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHH---------------------CCBCCHHHHH---HHHHHHTT--HH
T ss_pred             ccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhc---------------------CCCCCHHHHH---HHHHhHhH--HH
Confidence            99887654   45 3444 555655554322111                     1122322222   22232222  34


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcC
Q 017640          344 KIHAYEVKWIICSIIVIQERHN  365 (368)
Q Consensus       344 ~i~~~~~~l~~~l~~~l~~~~g  365 (368)
                      ...++..+.+.++.++|++.+.
T Consensus       266 ~r~~~~~~~a~~l~~~L~~~p~  287 (400)
T 3nmy_A          266 LRMRAHCENALALAQWLETHPA  287 (400)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHHHHHHHHcCCC
Confidence            4456667778888888877654

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.89  E-value=3e-23  Score=208.90  Aligned_cols=235  Identities=16%  Similarity=0.126  Sum_probs=178.3

Q ss_pred             HHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC
Q 017640          112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN  191 (368)
Q Consensus       112 ~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~  191 (368)
                      .+.++++.+|+++|++.  .+++++|+++++..++.++    +++||+|+++.++|.+.+..   +++..|+++++++..
T Consensus       174 ~i~e~e~~lA~~~gae~--~i~v~nGtt~an~~ai~al----~~pGD~VLv~~~~H~S~~~~---~~~l~Ga~~v~v~~~  244 (730)
T 1c4k_A          174 PAVAAEKHAARVYNADK--TYFVLGGSSNANNTVTSAL----VSNGDLVLFDRNNHKSVYNS---ALAMAGGRPVYLQTN  244 (730)
T ss_dssp             HHHHHHHHHHHHTTCSE--EEEESSHHHHHHHHHHHHH----CCTTCEEEEETTCCHHHHHH---HTTTTCCEEEEECEE
T ss_pred             HHHHHHHHHHHHHCCCc--EEEECCHHHHHHHHHHHHh----cCCCCEEEEcCCchHHHHHH---HHHHCCCEEEEEeCC
Confidence            56789999999999973  6788888889999999998    89999999999999997654   145679999988765


Q ss_pred             CC-----CCCCHHHH-----HHhcccC------c----eEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCc
Q 017640          192 DD-----ESPDLDKL-----KEMLSRK------T----KLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPH  251 (368)
Q Consensus       192 ~~-----~~~d~~~l-----~~~l~~~------~----~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~  251 (368)
                      .+     +.+|+++|     +++++++      +    ++++++++ |++|.+.|+++|+++|++||+++++|++|+.+.
T Consensus       245 ~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~livDeAh~~~~  323 (730)
T 1c4k_A          245 RNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYE  323 (730)
T ss_dssp             ECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEEECTTCCGG
T ss_pred             ccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEEEccccccc
Confidence            32     34688888     9998765      5    89999998 689999999999999999999999999997421


Q ss_pred             ---------ccccCCCCCcc----EEEecCcCcCC-CCcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCC
Q 017640          252 ---------MVVDVQGLDAD----FLVASSHKMCG-PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRF  317 (368)
Q Consensus       252 ---------~~~~~~~~~~d----~~~~s~~K~~g-~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~  317 (368)
                               .+++.+.++.|    ++++|+||+++ +.++|+++++++.+..-....           +...+......+
T Consensus       324 ~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g~~~~i-----------~~~~~~~~~~~~  392 (730)
T 1c4k_A          324 QFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYC-----------DHKHFNNSFNLF  392 (730)
T ss_dssp             GSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCC-----------CHHHHHHHHHHH
T ss_pred             ccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhcCccccc-----------CHHHHHHHHHHh
Confidence                     12333334667    99999999665 556789988887642100000           000000001234


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHh-hcCCC
Q 017640          318 EAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQE-RHNTT  367 (368)
Q Consensus       318 ~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~-~~g~t  367 (368)
                      ..+++++..++++.++++++...+.....++..++++++++.|.+ ++|++
T Consensus       393 ~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~  443 (730)
T 1c4k_A          393 MSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFR  443 (730)
T ss_dssp             SCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSE
T ss_pred             CCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeE
Confidence            578999999999999999888733355568899999999999998 67764

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.89  E-value=4.7e-22  Score=189.87  Aligned_cols=246  Identities=11%  Similarity=0.061  Sum_probs=173.0

Q ss_pred             CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHH---HccCC
Q 017640           76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAY---SWGLS  152 (368)
Q Consensus        76 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~---~~~~~  152 (368)
                      .++.++.+.+++.+.+..... ..     ..+...+...++++.++++++.+.+++|++|+|+++|+..++.   ++   
T Consensus        55 lg~~~~~v~~a~~~~~~~~~~-~~-----~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~---  125 (426)
T 1sff_A           55 TGHLHPKVVAAVEAQLKKLSH-TC-----FQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAA---  125 (426)
T ss_dssp             TCBTCHHHHHHHHHHTTTCSC-CC-----TTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHH---
T ss_pred             cCCCCHHHHHHHHHHHHhCCC-cc-----ccccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHh---
Confidence            345789999999888754311 10     0112245566899999999932332589999999999999988   55   


Q ss_pred             CCCCCCEEEEcCCCCcccHHHHHHHHHHcCCE-------------EEEEeCCC-----CCCCCHHHHHHhcc-----cCc
Q 017640          153 NLKSGDEVILTVAEHHSAIVPWQLVAQKTGAN-------------LKFLNLND-----DESPDLDKLKEMLS-----RKT  209 (368)
Q Consensus       153 ~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~-------------v~~v~~~~-----~~~~d~~~l~~~l~-----~~~  209 (368)
                       .++| .|++.+|.|++........   .|.+             ++.++.+.     ++.+|+++|+++++     +++
T Consensus       126 -~~~~-~vi~~~p~y~~~~~~~~~~---~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~  200 (426)
T 1sff_A          126 -TKRS-GTIAFSGAYHGRTHYTLAL---TGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDI  200 (426)
T ss_dssp             -HTCC-EEEEETTCCCCSSHHHHHH---SSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGE
T ss_pred             -hCCC-eEEEECCCcCCCchHhhhh---cCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCce
Confidence             5566 8999999998765433322   2332             67777753     23468999999886     467


Q ss_pred             eEEEEcc-cccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEEecCcCcCCCCc--c
Q 017640          210 KLVVIHH-ISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGPTG--I  277 (368)
Q Consensus       210 ~~v~~~~-~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~g~~G--~  277 (368)
                      ++|+++. ++| ||.+.+    +++|.++|++||+++|+|++|+ ++..    .++.....+|++  |+||.+|+ |  +
T Consensus       201 ~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~di~--s~sK~~~~-Glri  276 (426)
T 1sff_A          201 AAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLT--TFAKSIAG-GFPL  276 (426)
T ss_dssp             EEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEE--EECGGGGT-SSCC
T ss_pred             EEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhcCCCCCEE--EEcccccC-CCce
Confidence            7887754 455 997766    9999999999999999999998 3221    122222346665  77799887 7  7


Q ss_pred             eEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 017640          278 GFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSI  357 (368)
Q Consensus       278 G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~  357 (368)
                      |++++++++++.+.+...+                     ...+.+....+++.++++++.+.   .+.++..++.+++.
T Consensus       277 G~~~~~~~~~~~l~~~~~~---------------------~~~~~~~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~  332 (426)
T 1sff_A          277 AGVTGRAEVMDAVAPGGLG---------------------GTYAGNPIACVAALEVLKVFEQE---NLLQKANDLGQKLK  332 (426)
T ss_dssp             EEEEEEHHHHTTSCTTSBC---------------------CSSSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHH
T ss_pred             EEEEEcHHHHhhhccCCcC---------------------cCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHH
Confidence            9999999988777642211                     11256778888888899988763   45677888888888


Q ss_pred             HHHHhh
Q 017640          358 IVIQER  363 (368)
Q Consensus       358 ~~l~~~  363 (368)
                      +.+.++
T Consensus       333 ~~l~~~  338 (426)
T 1sff_A          333 DGLLAI  338 (426)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            877664

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.89  E-value=4.6e-22  Score=188.66  Aligned_cols=248  Identities=14%  Similarity=0.117  Sum_probs=179.5

Q ss_pred             EEeccCCC------CCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHH
Q 017640           69 VYLDNAAT------SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI  142 (368)
Q Consensus        69 i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~  142 (368)
                      .|+|....      ++.++.+.+++.+.+........  .+     ..+...+++++++++++.+   ++++|+|+++|+
T Consensus        40 ~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~--~~-----~~~~~~~l~~~la~~~~~~---~v~~~~gg~~a~  109 (406)
T 4adb_A           40 EYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGN--GY-----TNEPVLRLAKKLIDATFAD---RVFFCNSGAEAN  109 (406)
T ss_dssp             EEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCT--TS-----CCHHHHHHHHHHHHHSSCS---EEEEESSHHHHH
T ss_pred             EEEECCCchhhcccCCCCHHHHHHHHHHHHhcccccC--Cc-----CCHHHHHHHHHHHhhCCCC---eEEEeCcHHHHH
Confidence            46665432      34589999999988865322111  01     1344678999999999864   899999999999


Q ss_pred             HHHHHHccCCCCC-------CC-CEEEEcCCCCcccHHHHHHHHHH---------cCCEEEEEeCCCCCCCCHHHHHHhc
Q 017640          143 NLVAYSWGLSNLK-------SG-DEVILTVAEHHSAIVPWQLVAQK---------TGANLKFLNLNDDESPDLDKLKEML  205 (368)
Q Consensus       143 ~~~~~~~~~~~~~-------~g-d~vl~~~~~~~s~~~~~~~~~~~---------~g~~v~~v~~~~~~~~d~~~l~~~l  205 (368)
                      ..++.++    ..       +| |.|++.++.|++...........         .+.++..++.+     |+++|++++
T Consensus       110 ~~al~~~----~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l  180 (406)
T 4adb_A          110 EAALKLA----RKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYN-----DINSASALI  180 (406)
T ss_dssp             HHHHHHH----HHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTT-----CHHHHHTTC
T ss_pred             HHHHHHH----HHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCC-----cHHHHHHHh
Confidence            9999877    32       44 89999999999875444332110         01345556554     899999999


Q ss_pred             ccCceEEEEccccccccccc--C---HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEEecCcCcCCCC
Q 017640          206 SRKTKLVVIHHISNMLASIL--P---IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGPT  275 (368)
Q Consensus       206 ~~~~~~v~~~~~~n~tG~~~--~---l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~g~~  275 (368)
                      ++++++|+++ ++||+|.++  +   +++|.++|++||+++|+|++|+ ++..    ..+.....+|++  ++||.+| +
T Consensus       181 ~~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--t~sK~~~-~  256 (406)
T 4adb_A          181 DDSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLL--TTAKALG-G  256 (406)
T ss_dssp             STTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGG-T
T ss_pred             cCCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCCEE--Eechhhc-C
Confidence            9999999999 899999877  3   8899999999999999999996 3221    112223356777  4589888 5


Q ss_pred             c--ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Q 017640          276 G--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWI  353 (368)
Q Consensus       276 G--~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~  353 (368)
                      |  +|++++++++++.+.+...+..                     .+.+.....++..+++.+..   +.+.++.+++.
T Consensus       257 G~r~G~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~  312 (406)
T 4adb_A          257 GFPVGALLATEECARVMTVGTHGTT---------------------YGGNPLASAVAGKVLELINT---PEMLNGVKQRH  312 (406)
T ss_dssp             TSCCEEEEECHHHHHTCCTTSSCCS---------------------STTCHHHHHHHHHHHHHHSS---HHHHHHHHHHH
T ss_pred             CCCeEEEEEcHHHHhhhccCCcCCC---------------------CCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHH
Confidence            6  9999999999888876543221                     25667777777777776543   67788888888


Q ss_pred             HHHHHHHHhh
Q 017640          354 ICSIIVIQER  363 (368)
Q Consensus       354 ~~l~~~l~~~  363 (368)
                      +++.+.|.+.
T Consensus       313 ~~l~~~l~~~  322 (406)
T 4adb_A          313 DWFVERLNTI  322 (406)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888888764

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.89  E-value=3.7e-23  Score=197.83  Aligned_cols=172  Identities=15%  Similarity=0.216  Sum_probs=137.5

Q ss_pred             HHHHHHHHHHHHcCCCCCCcEEEeCCHHHHH--HHHHHHccCCCCC--C----------CCEEEEcCCCCcccHHHHHHH
Q 017640          112 EYELARKKVAAFINASDSGEIVFTKNATEAI--NLVAYSWGLSNLK--S----------GDEVILTVAEHHSAIVPWQLV  177 (368)
Q Consensus       112 ~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~--~~~~~~~~~~~~~--~----------gd~vl~~~~~~~s~~~~~~~~  177 (368)
                      ...++|++++++++++++ +|++|+|+++++  .+++.++    +.  +          ||+|++.+|+|++.    ...
T Consensus        79 g~~~lr~~ia~~~~~~~~-~i~~t~G~~~al~~~~~~~~l----~~~~~g~~~~~~~~~gd~V~v~~p~y~~~----~~~  149 (427)
T 3ppl_A           79 GIVDIRQIWADLLGVPVE-QVLAGDASSLNIMFDVISWSY----IFGNNDSVQPWSKEETVKWICPVPGYDRH----FSI  149 (427)
T ss_dssp             CCHHHHHHHHHHHTSCGG-GEEECSSCHHHHHHHHHHHHH----HHCCTTCSSCGGGSSCCEEEEEESCCHHH----HHH
T ss_pred             CcHHHHHHHHHHhCCCcc-eEEEeCCcHHHHHHHHHHHHH----hccCCcccccccCCCCCEEEEcCCCcHHH----HHH
Confidence            345899999999998765 999999999999  5788776    44  5          89999999988874    445


Q ss_pred             HHHcCCEEEEEeCCCCCCCCHHHHHHhcc-cCceEEEEc-ccccccccccCHH---HHHHHH-HhcCCEEEEecCCcCCc
Q 017640          178 AQKTGANLKFLNLNDDESPDLDKLKEMLS-RKTKLVVIH-HISNMLASILPIE---EIVHWS-HDVGAKVLVDACQSVPH  251 (368)
Q Consensus       178 ~~~~g~~v~~v~~~~~~~~d~~~l~~~l~-~~~~~v~~~-~~~n~tG~~~~l~---~i~~l~-~~~g~~li~D~a~~~~~  251 (368)
                      ++..|++++.+++++++ +|+++|+++++ +++++|++. +++||||.++|.+   +|.++| ++||+++|+|++|+...
T Consensus       150 ~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~  228 (427)
T 3ppl_A          150 TERFGFEMISVPMNEDG-PDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHT  228 (427)
T ss_dssp             HHHTTCEEEEEEEETTE-ECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCB
T ss_pred             HHHcCCEEEEeCCCCCC-CCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccc
Confidence            56679999999998776 89999999995 678888754 8999999999966   888888 99999999999998421


Q ss_pred             c------cccC-------CCCCccEEEecCcCcCCC-CcceEEEEcccccccCCCc
Q 017640          252 M------VVDV-------QGLDADFLVASSHKMCGP-TGIGFLFGKSDLLSAMPPF  293 (368)
Q Consensus       252 ~------~~~~-------~~~~~d~~~~s~~K~~g~-~G~G~l~~~~~li~~l~~~  293 (368)
                      .      ++++       +..+.+++++|+||..++ -++||+++++++++.+...
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~~l~~~~~~~  284 (427)
T 3ppl_A          229 LTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSAENRKWYTGH  284 (427)
T ss_dssp             SSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCHHHHHHHHHH
T ss_pred             cCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCHHHHHHHHHH
Confidence            1      1111       134678999999997332 3399999999888776543

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.89  E-value=1.3e-22  Score=195.16  Aligned_cols=265  Identities=15%  Similarity=0.105  Sum_probs=188.0

Q ss_pred             CeEEeccCCCCCCcHHHHHHHHHHHHHhh--ccCCCCcchhhHHHHHHHHHHH-HHHHHHcCCCCCCcEEEeCCHHHHHH
Q 017640           67 KLVYLDNAATSQKPIAVLKALQNYYEAYN--SNVHRGIHFLSAKATDEYELAR-KKVAAFINASDSGEIVFTKNATEAIN  143 (368)
Q Consensus        67 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r-~~la~~~~~~~~~~v~~t~g~t~a~~  143 (368)
                      +.+.|.. +..+.++.+++++.+.+...+  +++. ..+..+....+..+++. +.+++++|.+.  ..++++|+++|+.
T Consensus        46 ~~i~l~~-~~~~~~~~v~~a~~~~~~~~~~~g~~~-~~~~~g~~~~~~~e~~a~~~la~~~g~~~--~~v~~~sGs~a~~  121 (447)
T 3h7f_A           46 DTLEMIA-SENFVPRAVLQAQGSVLTNKYAEGLPG-RRYYGGCEHVDVVENLARDRAKALFGAEF--ANVQPHSGAQANA  121 (447)
T ss_dssp             HSEECCT-TCCCCCHHHHHHHTSGGGGCCCCEETT-EESSSCCHHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHH
T ss_pred             CceeEec-CCCCCCHHHHHHHHHHhcCCccccCCc-ccccCccHHHHHHHHHHHHHHHHHcCCCc--eEEEeCCHHHHHH
Confidence            3466744 345669999999988765322  1221 11222333344445555 99999999873  3343788899999


Q ss_pred             HHHHHccCCCCCCCCEEEEcCCCCcccHH-HHHHHHHHcCCEEEEEeCC-CCCCCCHHHHHHhcc-cCceEEEEcccccc
Q 017640          144 LVAYSWGLSNLKSGDEVILTVAEHHSAIV-PWQLVAQKTGANLKFLNLN-DDESPDLDKLKEMLS-RKTKLVVIHHISNM  220 (368)
Q Consensus       144 ~~~~~~~~~~~~~gd~vl~~~~~~~s~~~-~~~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~l~-~~~~~v~~~~~~n~  220 (368)
                      .++.++    +++||+|++.+++|++.+. .........+..++.++++ +++.+|+++|++++. .++++|++++++||
T Consensus       122 ~a~~~~----~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~i~~~~~~~~  197 (447)
T 3h7f_A          122 AVLHAL----MSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAYP  197 (447)
T ss_dssp             HHHHHH----CCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHHHCCSEEEEECSSCC
T ss_pred             HHHHHh----cCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHHhcCCeEEEEcCCCCC
Confidence            999998    8999999999999877321 1110111125567777776 457899999999995 47899999899998


Q ss_pred             cccccCHHHHHHHHHhcCCEEEEecCCcCCccc----ccCCCCCccEEEecCcCcCC-CCcceEEEEcccccccCCCccc
Q 017640          221 LASILPIEEIVHWSHDVGAKVLVDACQSVPHMV----VDVQGLDADFLVASSHKMCG-PTGIGFLFGKSDLLSAMPPFLG  295 (368)
Q Consensus       221 tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~----~~~~~~~~d~~~~s~~K~~g-~~G~G~l~~~~~li~~l~~~~~  295 (368)
                      ++.  ++++|.++|++||+++|+|++|+.|...    .+.. .+.|++++|+||.++ +.| |++++++++++.+.+...
T Consensus       198 ~~~--~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~-~~~di~~~s~sK~l~G~~g-G~i~~~~~~~~~l~~~~~  273 (447)
T 3h7f_A          198 RVL--DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV-PHADVVSTTVHKTLGGGRS-GLIVGKQQYAKAINSAVF  273 (447)
T ss_dssp             SCC--CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST-TTCSEEEEESSGGGCCCSC-EEEEECGGGHHHHHHHHT
T ss_pred             Ccc--CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC-CCCcEEEecCCcCCCCCCe-EEEEECHHHHHHHhhhcC
Confidence            876  9999999999999999999998754321    1111 257899999999765 555 999999988776654322


Q ss_pred             CCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          296 GGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       296 g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +                    +..|+++...++++..++....+.+++...++..++++++.+.|.+.
T Consensus       274 ~--------------------~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  321 (447)
T 3h7f_A          274 P--------------------GQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAP  321 (447)
T ss_dssp             T--------------------TTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSH
T ss_pred             C--------------------cccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            1                    12357777778888888776554456778888889999999888765

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.89  E-value=2.8e-22  Score=203.41  Aligned_cols=226  Identities=11%  Similarity=0.070  Sum_probs=176.5

Q ss_pred             HHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeC
Q 017640          111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL  190 (368)
Q Consensus       111 ~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~  190 (368)
                      ..+.+.++.+++++|.+  +.+++++|+++++..++.++    +++||.|+++.++|.++...+    ...|+++++++.
T Consensus       205 g~v~~~ee~la~l~G~d--~~i~~~~Gtt~a~~~~i~al----~~~GD~Vlv~~~~h~s~~~~~----~~~G~~~v~v~~  274 (755)
T 2vyc_A          205 GAFGESEKYAARVFGAD--RSWSVVVGTSGSNRTIMQAC----MTDNDVVVVDRNCHKSIEQGL----MLTGAKPVYMVP  274 (755)
T ss_dssp             HHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHH----CCTTCEEEEESSCCHHHHHHH----HHHCCEEEEECC
T ss_pred             cHHHHHHHHHHHHhCCC--ceEEECCcHHHHHHHHHHHh----cCCCCEEEECCCchHHHHHHH----HHcCCEEEEEeC
Confidence            34668999999999986  36788899899999999998    899999999999999977653    445999999988


Q ss_pred             CCC-----CCC-----CHHHHHHhccc--Cce--------EEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCC
Q 017640          191 NDD-----ESP-----DLDKLKEMLSR--KTK--------LVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVP  250 (368)
Q Consensus       191 ~~~-----~~~-----d~~~l~~~l~~--~~~--------~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~  250 (368)
                      +.+     +.+     |+++|++++++  +++        +++++++ |++|.+.|+++|+++|++||+++++|++|+.+
T Consensus       275 ~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~  353 (755)
T 2vyc_A          275 SRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGY  353 (755)
T ss_dssp             CBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEEEECTTCTT
T ss_pred             CCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEEEECcCchh
Confidence            643     345     99999999964  344        8888987 79999999999999999999999999999753


Q ss_pred             cc--cc--cCCC-CC--ccE------EEecCcCcCC-CCcceEEEEccc--ccccCCCcccCCcceeecccCCCCCCCCC
Q 017640          251 HM--VV--DVQG-LD--ADF------LVASSHKMCG-PTGIGFLFGKSD--LLSAMPPFLGGGEMISDVFLDHSTFADPP  314 (368)
Q Consensus       251 ~~--~~--~~~~-~~--~d~------~~~s~~K~~g-~~G~G~l~~~~~--li~~l~~~~~g~~~~~~~~~~~~~~~~~~  314 (368)
                      ..  +.  +... .+  .|+      ++.|+||+++ +.++|+++++++  .++..+ ..                 ...
T Consensus       354 ~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~-~~-----------------~~~  415 (755)
T 2vyc_A          354 ARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSR-FN-----------------QAY  415 (755)
T ss_dssp             GGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHH-HH-----------------HHH
T ss_pred             cccCcccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHH-HH-----------------HHH
Confidence            21  10  1111 23  465      9999999665 556899988876  221100 00                 000


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcC
Q 017640          315 SRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHN  365 (368)
Q Consensus       315 ~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g  365 (368)
                      ..+..+++++..++++.++++++...|.+.+.++..++++++++.|.+++|
T Consensus       416 ~~~~s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~  466 (755)
T 2vyc_A          416 MMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYK  466 (755)
T ss_dssp             HHTSCSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence            245578999999999999999988775577889999999999999998766

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.89  E-value=1.3e-22  Score=192.85  Aligned_cols=263  Identities=12%  Similarity=0.036  Sum_probs=178.5

Q ss_pred             CCeEEeccCCC-C-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc-CCCC----CCcEE--EeC
Q 017640           66 KKLVYLDNAAT-S-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI-NASD----SGEIV--FTK  136 (368)
Q Consensus        66 ~~~i~l~~~~~-~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~-~~~~----~~~v~--~t~  136 (368)
                      ++++.|..+.+ . +.++.+.+++.+...    . ....+.    ......++|+.+++++ |...    +++|.  .|.
T Consensus        41 ~~~i~l~~g~~~d~~~~~~v~~a~~~a~~----~-~~~~y~----~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~  111 (409)
T 4eu1_A           41 KRKVNLSIGVYRDDADQPFVLECVKQATL----G-TNMDYA----PVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTL  111 (409)
T ss_dssp             SSCEECCCSSCCCTTSCCCCCHHHHTCCC----C-SCCCCC----CTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEES
T ss_pred             cCceeeeeeEEECCCCCEeecHHHHhcCc----c-ccccCC----CCCCcHHHHHHHHHHHcCCCchhhccCceeeeecc
Confidence            56788888875 4 445566666665511    1 001111    1222347888999876 6551    34774  489


Q ss_pred             CHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC--CCCCCCHHHHHHhcc---cCceE
Q 017640          137 NATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDESPDLDKLKEMLS---RKTKL  211 (368)
Q Consensus       137 g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~l~---~~~~~  211 (368)
                      |+++++..+...+. ...++||+|++.+|.|++.    ...++..|++++.+++.  +++.+|+++|+++++   +++++
T Consensus       112 ~g~ga~~~~~~~~~-~~~~~gd~Vlv~~p~y~~~----~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~  186 (409)
T 4eu1_A          112 GGTGALRIGGDLLN-RFVANCNRIYGPDVGYPNH----ESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVI  186 (409)
T ss_dssp             HHHHHHHHHHHHGG-GTSSSCCEEEEESSCCTHH----HHHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHSCTTCEE
T ss_pred             cchHHHHHHHHHHH-HhcCCCCEEEEeCCCcHhH----HHHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhCCCCcEE
Confidence            99999988754331 1368899999999998874    44456679999999983  457889999999995   35677


Q ss_pred             EEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc--------cc-cC-CCCCccEEEecCcCcCCCCc--
Q 017640          212 VVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM--------VV-DV-QGLDADFLVASSHKMCGPTG--  276 (368)
Q Consensus       212 v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~--------~~-~~-~~~~~d~~~~s~~K~~g~~G--  276 (368)
                      +++++++||||.+++   +++|+++|++||+++|+|++|+....        ++ .+ ......++++|+||.||++|  
T Consensus       187 i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r  266 (409)
T 4eu1_A          187 LVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGHR  266 (409)
T ss_dssp             EEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGGGC
T ss_pred             EEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCccCC
Confidence            788999999999999   55699999999999999999873321        11 11 22345688999999999888  


Q ss_pred             ceEE--EE-ccc----ccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-----HhCHHH
Q 017640          277 IGFL--FG-KSD----LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS-----TIGMQK  344 (368)
Q Consensus       277 ~G~l--~~-~~~----li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~-----~~g~~~  344 (368)
                      +|++  ++ +++    +++.++.....                     ...+++.....++..+++...     ...++.
T Consensus       267 iG~~~~v~~~~~~~~~l~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  325 (409)
T 4eu1_A          267 CGALHISTASAEEAKRLVSQLALLIRP---------------------MYNNPPLYGAWVVSSILKDPQLTALWKKELKQ  325 (409)
T ss_dssp             CEEEEEECSSHHHHHHHHHHHHHHHHH---------------------HHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCHHHHHHHHHHHHHHHhh---------------------hcCCCChHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            8996  44 455    44444322111                     011455666666666665321     113677


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q 017640          345 IHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       345 i~~~~~~l~~~l~~~l~~~  363 (368)
                      ++++..++.+++.+.|.+.
T Consensus       326 ~~~~~~~~~~~l~~~L~~~  344 (409)
T 4eu1_A          326 MSSRIAEVRKRLVSELKAC  344 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            8888889999999998875

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.88  E-value=3.1e-22  Score=191.14  Aligned_cols=211  Identities=17%  Similarity=0.285  Sum_probs=155.5

Q ss_pred             CCeEEeccCCCC----CCcHHHHHHHH--HHHHHhhccCCCCcchhhH-HHHHHHHHHHHHHHHHcCCCCCCcEEEeCCH
Q 017640           66 KKLVYLDNAATS----QKPIAVLKALQ--NYYEAYNSNVHRGIHFLSA-KATDEYELARKKVAAFINASDSGEIVFTKNA  138 (368)
Q Consensus        66 ~~~i~l~~~~~~----~~~~~v~~a~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~  138 (368)
                      .+.+.|..+.+.    +.++.+.+++.  +.+..  .     .....+ .......++|+.++++++++++ +|++|+|+
T Consensus        25 ~~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~--~-----~~~~~Yp~~~~g~~~lr~~ia~~~~~~~~-~i~~t~G~   96 (423)
T 3ez1_A           25 GLNLNMQRGQPADADFDLSNGLLTVLGAEDVRMD--G-----LDLRNYPGGVAGLPSARALFAGYLDVKAE-NVLVWNNS   96 (423)
T ss_dssp             TCCEESCCCCCCHHHHHTTGGGGGSCCGGGCEET--T-----EETTSSCSCTTCCHHHHHHHHHHTTSCGG-GEEECSSC
T ss_pred             CceEecCCCCCChHhCCCcHHHHHHHhhhHHhhc--c-----hhhhCCCCCCCChHHHHHHHHHHhCCChh-hEEEeCCc
Confidence            456888888766    34556777664  33221  0     000111 1123344899999999998765 99999999


Q ss_pred             HHHHH--HHHHHccCCCCC--C---------CCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhc
Q 017640          139 TEAIN--LVAYSWGLSNLK--S---------GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEML  205 (368)
Q Consensus       139 t~a~~--~~~~~~~~~~~~--~---------gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l  205 (368)
                      ++++.  +++.++    +.  +         ||+|++.+|+|++..    ..++..|++++.++.++++ +|+++|++++
T Consensus        97 ~~al~~~~~~~~l----~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l  167 (423)
T 3ez1_A           97 SLELQGLVLTFAL----LHGVRGSTGPWLSQTPKMIVTVPGYDRHF----LLLQTLGFELLTVDMQSDG-PDVDAVERLA  167 (423)
T ss_dssp             HHHHHHHHHHHHH----HTCCTTCSSCGGGGCCEEEEEESCCHHHH----HHHHHHTCEEEEEEEETTE-ECHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----hccCCCccccccCCCCEEEEcCCCcHHHH----HHHHHcCCEEEeccCCCCC-CCHHHHHHHH
Confidence            99998  888877    45  6         699999999888754    3455569999999998765 8999999999


Q ss_pred             --ccCceEEE-EcccccccccccCHH---HHHHHH-HhcCCEEEEecCCcCCcc-------cccC-------CCCCccEE
Q 017640          206 --SRKTKLVV-IHHISNMLASILPIE---EIVHWS-HDVGAKVLVDACQSVPHM-------VVDV-------QGLDADFL  264 (368)
Q Consensus       206 --~~~~~~v~-~~~~~n~tG~~~~l~---~i~~l~-~~~g~~li~D~a~~~~~~-------~~~~-------~~~~~d~~  264 (368)
                        .+++++|+ +++++||||.++|.+   +|.++| ++||+++|+|++|+....       ..++       +..+.+++
T Consensus       168 ~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  247 (423)
T 3ez1_A          168 GTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFV  247 (423)
T ss_dssp             HSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEE
T ss_pred             hhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEE
Confidence              56888886 568999999999965   888888 899999999999983211       1111       23467899


Q ss_pred             EecCcCc-CCCCcceEEEEcccccccCCCc
Q 017640          265 VASSHKM-CGPTGIGFLFGKSDLLSAMPPF  293 (368)
Q Consensus       265 ~~s~~K~-~g~~G~G~l~~~~~li~~l~~~  293 (368)
                      +.|+||. +++.++|++++++++++.+...
T Consensus       248 ~~S~sK~~~~G~r~G~~~~~~~~~~~~~~~  277 (423)
T 3ez1_A          248 FASTSKITFAGAGLGFVASSEDNIRWLSKY  277 (423)
T ss_dssp             EEESTTTSCSSSSCEEEEECHHHHHHHHHH
T ss_pred             EeCchhhccCCcceEEEEeCHHHHHHHHHH
Confidence            9999995 3344499999999988776543

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.88  E-value=3.6e-22  Score=190.35  Aligned_cols=265  Identities=16%  Similarity=0.113  Sum_probs=170.6

Q ss_pred             EEeccCCCCCCcHHHHHHHHHHHHHhh--ccCCCCcchhhHHHH-HHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHH
Q 017640           69 VYLDNAATSQKPIAVLKALQNYYEAYN--SNVHRGIHFLSAKAT-DEYELARKKVAAFINASDSGEIVFTKNATEAINLV  145 (368)
Q Consensus        69 i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~  145 (368)
                      +.+..+ ..+.++.+.+++.+.+...+  .++.. .+..+.... ...+..++.+++++|.+.  ..++++|+++|+..+
T Consensus        35 i~l~~~-~~~~~~~v~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~v~~~~Gs~a~~~a  110 (425)
T 3ecd_A           35 VELIAS-ENIVSRAVLDAQGSVLTNKYAEGYPGK-RYYGGCEFADEVEALAIERVKRLFNAGH--ANVQPHSGAQANGAV  110 (425)
T ss_dssp             EECCTT-CCCCCHHHHHHHTSGGGSSCTTC-------------CCHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHHHH
T ss_pred             eeeecc-cCCCCHHHHHHHhhhhhcccccCCCcc-hhcCCChHHHHHHHHHHHHHHHHhCCCC--ceeecCchHHHHHHH
Confidence            455433 34559999999988764321  11111 111111111 233345688999999863  335688999999999


Q ss_pred             HHHccCCCCCCCCEEEEcCCCCcccHHHHHHH-HHHcCCEEEEEeCCC-CCCCCHHHHHHhcc-cCceEEEEcccccccc
Q 017640          146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLV-AQKTGANLKFLNLND-DESPDLDKLKEMLS-RKTKLVVIHHISNMLA  222 (368)
Q Consensus       146 ~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~-~~~~g~~v~~v~~~~-~~~~d~~~l~~~l~-~~~~~v~~~~~~n~tG  222 (368)
                      +.++    +++||+|++.+++|++........ ....+.+++.++.++ ++.+|+++|+++++ +++++|++++++|  |
T Consensus       111 l~~~----~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~--~  184 (425)
T 3ecd_A          111 MLAL----AKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAY--P  184 (425)
T ss_dssp             HHHH----CCTTCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEEECSCC--C
T ss_pred             HHHc----cCCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhcCCcEEEEccccC--C
Confidence            9988    899999999999998833212111 111233566666663 47889999999997 5899999998887  4


Q ss_pred             cccCHHHHHHHHHhcCCEEEEecCCcCCccccc--CC-CCCccEEEecCcCcCCCCcceEEEEcc-cccccCCCcccCCc
Q 017640          223 SILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD--VQ-GLDADFLVASSHKMCGPTGIGFLFGKS-DLLSAMPPFLGGGE  298 (368)
Q Consensus       223 ~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~--~~-~~~~d~~~~s~~K~~g~~G~G~l~~~~-~li~~l~~~~~g~~  298 (368)
                      ...++++|.++|++||+++|+|++|+.+...-.  .. ....|++++|+||.++++.+|++++++ ++.+.+.+....+ 
T Consensus       185 ~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~g~~~~~~~~~~~~~~~~~~~~-  263 (425)
T 3ecd_A          185 RKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTLRGPRGGFVLTNDEEIAKKINSAVFPG-  263 (425)
T ss_dssp             SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCCCSCEEEEESCHHHHHHHHHHHC---
T ss_pred             CcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchhcCcEEEecCCcccCCCCcEEEEeCCHHHHHHHHhhhCcc-
Confidence            678899999999999999999999875443111  00 113789999999977433369999885 5555544332211 


Q ss_pred             ceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          299 MISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                                         ..++++...++++..++......+++.+.++..++.+++.+.|.+.
T Consensus       264 -------------------~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  309 (425)
T 3ecd_A          264 -------------------LQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG  309 (425)
T ss_dssp             ----------------------CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -------------------ccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC
Confidence                               1236777777777777765544457788899999999999999873

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.88  E-value=1.4e-22  Score=193.57  Aligned_cols=175  Identities=18%  Similarity=0.220  Sum_probs=140.2

Q ss_pred             HHHHHHHHHHHHcCCCCCC-cEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcC-CCCcccHHHHH------HHHHHcCC
Q 017640          112 EYELARKKVAAFINASDSG-EIVFTKNATEAINLVAYSWGLSNLKSGDEVILTV-AEHHSAIVPWQ------LVAQKTGA  183 (368)
Q Consensus       112 ~~~~~r~~la~~~~~~~~~-~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~-~~~~s~~~~~~------~~~~~~g~  183 (368)
                      ..+++++.+++++|.+... +++++ |+|+|+..++.++    +++||+|++.+ +.|.+....+.      ..++..|+
T Consensus        66 ~~~~l~~~la~~~g~~~~~~~i~~~-sGt~Ai~~al~al----~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~  140 (431)
T 3ht4_A           66 GRDTLEKVYADVFGAEAGLVRPQII-SGTHAISTALFGI----LRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNI  140 (431)
T ss_dssp             HHHHHHHHHHHHTTCSEECCBTTSC-SHHHHHHHHHHTT----CCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTC
T ss_pred             hHHHHHHHHHHHhCCCcccccceee-CHHHHHHHHHHHh----CCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCC
Confidence            3678999999999997431 22244 7789999999988    89999999998 88887543321      23355799


Q ss_pred             EEEEEeCCCCCCCCHHHHHHhcccCceEEEEcc-ccccccccc---CHHHHHHHHHh--cCCEEEEecCCcCCcccccCC
Q 017640          184 NLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHH-ISNMLASIL---PIEEIVHWSHD--VGAKVLVDACQSVPHMVVDVQ  257 (368)
Q Consensus       184 ~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~-~~n~tG~~~---~l~~i~~l~~~--~g~~li~D~a~~~~~~~~~~~  257 (368)
                      +++.++.++++.+|+++|++++++++++|++++ ++||+|...   ++++|.++|++  +|+++++|++|+.+....+..
T Consensus       141 ~~~~v~~~~~~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~  220 (431)
T 3ht4_A          141 GYNAVPLTEGGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPC  220 (431)
T ss_dssp             EEEECCBCTTSSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGG
T ss_pred             EEEEeCCCCCCCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCcc
Confidence            999999998899999999999999999999995 666666555   48899999999  999999999999776433333


Q ss_pred             CCCccEEEecCcCcCC----CCcceEEEEcccccccCCC
Q 017640          258 GLDADFLVASSHKMCG----PTGIGFLFGKSDLLSAMPP  292 (368)
Q Consensus       258 ~~~~d~~~~s~~K~~g----~~G~G~l~~~~~li~~l~~  292 (368)
                      ..+.|++++|++|.+|    +.| |++++++++++.++.
T Consensus       221 ~~g~Di~~~S~sK~lgg~~~~~G-G~v~~~~~li~~l~~  258 (431)
T 3ht4_A          221 HVGADLMAGSLIKNPGGGIVKTG-GYIVGKEQYVEACAY  258 (431)
T ss_dssp             GTTCSEEEEETTSGGGTTTCSSC-EEEEECHHHHHHHHH
T ss_pred             ccCCeEEEcCccccCCCCCCCce-EEEEecHHHHHHHHH
Confidence            4578999999999744    555 999999998887764

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.88  E-value=1.3e-21  Score=185.03  Aligned_cols=252  Identities=13%  Similarity=0.111  Sum_probs=176.8

Q ss_pred             eEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHH
Q 017640           68 LVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEA  141 (368)
Q Consensus        68 ~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a  141 (368)
                      .-|+|..+      .|+.++.+.+++.+.+.......       .....+...++++++++++|.   +++++++|+++|
T Consensus        36 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~la~~~~~---~~v~~~~gg~ea  105 (395)
T 3nx3_A           36 KKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTS-------NLYYNENIAAAAKNLAKASAL---ERVFFTNSGTES  105 (395)
T ss_dssp             CEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCC-------TTSBCHHHHHHHHHHHHHHTC---SEEEEESSHHHH
T ss_pred             CEEEECCCcHHhccCCCCCHHHHHHHHHHHHhccccc-------cccCCHHHHHHHHHHHHhcCC---CeEEEeCCHHHH
Confidence            34677653      23568999999998886532111       111245667899999999983   389999999999


Q ss_pred             HHHHHHHccCCCC-----CCCCEEEEcCCCCcccHHHHHHH---------HHHcCCEEEEEeCCCCCCCCHHHHHHhccc
Q 017640          142 INLVAYSWGLSNL-----KSGDEVILTVAEHHSAIVPWQLV---------AQKTGANLKFLNLNDDESPDLDKLKEMLSR  207 (368)
Q Consensus       142 ~~~~~~~~~~~~~-----~~gd~vl~~~~~~~s~~~~~~~~---------~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~  207 (368)
                      +..++.++..  .     .+++.|++.++.|++........         ....+.++..++.+     |+++|++++++
T Consensus       106 ~~~al~~~~~--~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~  178 (395)
T 3nx3_A          106 IEGAMKTARK--YAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYN-----DISSVEKLVNE  178 (395)
T ss_dssp             HHHHHHHHHH--HHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTT-----CHHHHHTTCCT
T ss_pred             HHHHHHHHHH--HhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCC-----CHHHHHHhccC
Confidence            9999987621  1     46799999999998764322211         11123466677665     89999999998


Q ss_pred             CceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEEecCcCcCCC-Ccc
Q 017640          208 KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGP-TGI  277 (368)
Q Consensus       208 ~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~g~-~G~  277 (368)
                      ++++|++++++|++|.+.+    +++|.++|++||+++|+|++|+ ++..    ..+.....+|+++  ++|.+|+ .++
T Consensus       179 ~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~t--~sK~~~~G~~~  256 (395)
T 3nx3_A          179 KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIMT--SAKALGCGLSV  256 (395)
T ss_dssp             TEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGGGTTTSCC
T ss_pred             CeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEEE--ecccccCCCce
Confidence            8999999999999999987    9999999999999999999987 4322    1222233466664  5697664 248


Q ss_pred             eEEEEcccc-cccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 017640          278 GFLFGKSDL-LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICS  356 (368)
Q Consensus       278 G~l~~~~~l-i~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l  356 (368)
                      |++++++++ ++.+.+...+.+.                     +.+..+.+++.++++.+.+.   .+.++.+++.+++
T Consensus       257 G~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~aa~aal~~~~~~---~~~~~~~~~~~~~  312 (395)
T 3nx3_A          257 GAFVINQKVASNSLEAGDHGSTY---------------------GGNPLVCAGVNAVFEIFKEE---KILENVNKLTPYL  312 (395)
T ss_dssp             EEEEECHHHHHHHSCTTCCSSCB---------------------SCCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHH
T ss_pred             EEEEEchhhhhhhcCCcccCCCC---------------------CCCHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHH
Confidence            999999998 7777765433222                     45777777788888877553   3445555555555


Q ss_pred             HHHHHh
Q 017640          357 IIVIQE  362 (368)
Q Consensus       357 ~~~l~~  362 (368)
                      .+.|.+
T Consensus       313 ~~~l~~  318 (395)
T 3nx3_A          313 EQSLDE  318 (395)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555543

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.88  E-value=1.4e-21  Score=186.67  Aligned_cols=248  Identities=18%  Similarity=0.141  Sum_probs=176.3

Q ss_pred             CeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHH
Q 017640           67 KLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE  140 (368)
Q Consensus        67 ~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~  140 (368)
                      +..|+|..+      .++.++.+.+++.+.+..+.... . .+     ..+...++++.+++++|.   ++|++|+|+++
T Consensus        56 g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~~-~-~~-----~~~~~~~l~~~la~~~g~---~~v~~~~ggte  125 (420)
T 2pb2_A           56 GKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTS-N-VF-----TNEPALRLGRKLIDATFA---ERVLFMNSGTE  125 (420)
T ss_dssp             CCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCC-T-TS-----CCHHHHHHHHHHHHHSSC---SEEEEESSHHH
T ss_pred             CCEEEEccccccccccCCCCHHHHHHHHHHHHhccccc-C-cc-----CCHHHHHHHHHHHhhCCC---CeEEEeCCHHH
Confidence            345666643      34578999999999886542111 0 01     235567899999999984   38999999999


Q ss_pred             HHHHHHHHccCCCCC-------CC-CEEEEcCCCCcccHHHHHHHHHHcCC------------EEEEEeCCCCCCCCHHH
Q 017640          141 AINLVAYSWGLSNLK-------SG-DEVILTVAEHHSAIVPWQLVAQKTGA------------NLKFLNLNDDESPDLDK  200 (368)
Q Consensus       141 a~~~~~~~~~~~~~~-------~g-d~vl~~~~~~~s~~~~~~~~~~~~g~------------~v~~v~~~~~~~~d~~~  200 (368)
                      |+..++.++    ..       +| ++|++.++.|++........   .|.            .+..++.+     |+++
T Consensus       126 A~~~al~~~----~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~---~g~~~~~~~~~p~~~~~~~~~~~-----d~~~  193 (420)
T 2pb2_A          126 ANETAFKLA----RHYACVRHSPFKTKIIAFHNAFHGRSLFTVSV---GGQPKYSDGFGPKPADIIHVPFN-----DLHA  193 (420)
T ss_dssp             HHHHHHHHH----HHHHHHHTCTTCCEEEEETTCCCCSSHHHHHH---SSCHHHHTTSSSCCSCEEEECTT-----CHHH
T ss_pred             HHHHHHHHH----HHHhhhccCCCCCEEEEEeCCcCCcCHHHHHh---cCCccccccCCCCCCCeEEecCC-----CHHH
Confidence            999999987    32       56 58999999998765433322   232            25666653     8999


Q ss_pred             HHHhcccCceEEEEcccccccccc-cC---HHHHHHHHHhcCCEEEEecCCc-CCcc--c--ccCCCCCccEEEecCcCc
Q 017640          201 LKEMLSRKTKLVVIHHISNMLASI-LP---IEEIVHWSHDVGAKVLVDACQS-VPHM--V--VDVQGLDADFLVASSHKM  271 (368)
Q Consensus       201 l~~~l~~~~~~v~~~~~~n~tG~~-~~---l~~i~~l~~~~g~~li~D~a~~-~~~~--~--~~~~~~~~d~~~~s~~K~  271 (368)
                      |++++++++++|++++++|++|.+ +|   +++|.++|++||+++|+|++|. ++..  .  ++.....+|++  +++|.
T Consensus       194 le~~i~~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~dii--t~sK~  271 (420)
T 2pb2_A          194 VKAVMDDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDIL--TSAKA  271 (420)
T ss_dssp             HHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGG
T ss_pred             HHHHhccCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCCCCCeE--Eeccc
Confidence            999999899999999999988863 44   8999999999999999999996 3221  1  12222357877  56798


Q ss_pred             CCCCc--ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH
Q 017640          272 CGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYE  349 (368)
Q Consensus       272 ~g~~G--~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~  349 (368)
                      +| +|  +|++++++++++.+.+...+.                  .|   +.+..+.+++.++++.+.+   +.+.++.
T Consensus       272 l~-~G~~iG~~~~~~~l~~~l~~~~~~~------------------t~---~~~~~~~aa~~a~L~~~~~---~~~~~~~  326 (420)
T 2pb2_A          272 LG-GGFPVSAMLTTQEIASAFHVGSHGS------------------TY---GGNPLACAVAGAAFDIINT---PEVLQGI  326 (420)
T ss_dssp             GG-TTSCCEEEEECHHHHTTCC----CC------------------EE---CCCHHHHHHHHHHHHHHSS---HHHHHHH
T ss_pred             cc-CCCceEEEEEhHHHHHhhcCCCcCc------------------cc---CcCHHHHHHHHHHHHHHHh---ccHHHHH
Confidence            87 34  999999998877776532111                  11   4567777777777877654   5677888


Q ss_pred             HHHHHHHHHHHHhh
Q 017640          350 VKWIICSIIVIQER  363 (368)
Q Consensus       350 ~~l~~~l~~~l~~~  363 (368)
                      +++.+++.+.|.+.
T Consensus       327 ~~~~~~l~~~L~~~  340 (420)
T 2pb2_A          327 HTKRQQFVQHLQAI  340 (420)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888888888764

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.88  E-value=5.6e-21  Score=182.29  Aligned_cols=258  Identities=12%  Similarity=0.033  Sum_probs=176.1

Q ss_pred             CeEEeccCC------CCCC-cHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           67 KLVYLDNAA------TSQK-PIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        67 ~~i~l~~~~------~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      +..|+|...      .++. ++.+.+++.+.+........ ..+     ..+...++++.+++++|.+.+++|++|+|++
T Consensus        41 g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~~~-~~~-----~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~  114 (419)
T 2eo5_A           41 GNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAA-NDF-----YNIPQLELAKKLVTYSPGNFQKKVFFSNSGT  114 (419)
T ss_dssp             SCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCCSC-SCS-----CCHHHHHHHHHHHHHSSCSSCEEEEEESSHH
T ss_pred             CCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCccccc-ccc-----CCHHHHHHHHHHHHhCCCCcCCEEEEeCchH
Confidence            335666643      2344 79999999998865421100 001     1234457889999999986224999999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHH-----H-----cCCEEEEEeCCCCCC--------------
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQ-----K-----TGANLKFLNLNDDES--------------  195 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~-----~-----~g~~v~~v~~~~~~~--------------  195 (368)
                      +|+..++.++.   ..+||+|++.+|.|++..........     .     ...+++.++.+.++.              
T Consensus       115 ea~~~ai~~~~---~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~  191 (419)
T 2eo5_A          115 EAIEASIKVVK---NTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSEL  191 (419)
T ss_dssp             HHHHHHHHHHH---TTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHH
T ss_pred             HHHHHHHHHHH---HhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhh
Confidence            99999998752   11389999999999876543333211     0     113577888764432              


Q ss_pred             --CCHHHHH-Hhcc-----cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCC
Q 017640          196 --PDLDKLK-EMLS-----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQG  258 (368)
Q Consensus       196 --~d~~~l~-~~l~-----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~  258 (368)
                        +|+++|+ ++++     +++++|+++..+|+||.+.+    +++|.++|++||+++|+|++|+ ++..    .++...
T Consensus       192 ~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~  271 (419)
T 2eo5_A          192 VNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFN  271 (419)
T ss_dssp             HHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGT
T ss_pred             HHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcC
Confidence              3688999 8886     35677777766778998776    9999999999999999999998 5432    122223


Q ss_pred             CCccEEEecCcCcCCC--CcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 017640          259 LDADFLVASSHKMCGP--TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY  336 (368)
Q Consensus       259 ~~~d~~~~s~~K~~g~--~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~  336 (368)
                      ..+|++  |++|.+|+  -++|+++++++++ .+ ....+                     ...+.|..+++++.++++.
T Consensus       272 ~~~d~~--t~sK~~~~G~~riG~~~~~~~~~-~~-~~~~~---------------------~t~~~n~~~~~aa~aal~~  326 (419)
T 2eo5_A          272 TVPDVI--TLAKALGGGIMPIGATIFRKDLD-FK-PGMHS---------------------NTFGGNALACAIGSKVIDI  326 (419)
T ss_dssp             CCCSEE--EECGGGGTTTSCCEEEEEEGGGC-CC----------------------------CCCCCHHHHHHHHHHHHH
T ss_pred             CCCCEE--EecccccCCccceEEEEEchHhh-cC-CcccC---------------------CCCCCCHHHHHHHHHHHHH
Confidence            356766  57797764  3489999999876 55 21111                     1125577888888888887


Q ss_pred             HHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          337 LSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       337 ~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +.+     +.++.+++.+++.+.|.++
T Consensus       327 ~~~-----~~~~~~~~~~~l~~~L~~~  348 (419)
T 2eo5_A          327 VKD-----LLPHVNEIGKIFAEELQGL  348 (419)
T ss_dssp             HHH-----HHHHHHHHHHHHHHHHTTS
T ss_pred             HHH-----HHHHHHHHHHHHHHHHHHh
Confidence            654     6788888889998888764

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.88  E-value=1.2e-20  Score=180.68  Aligned_cols=256  Identities=11%  Similarity=0.096  Sum_probs=172.7

Q ss_pred             CeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHH
Q 017640           67 KLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE  140 (368)
Q Consensus        67 ~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~  140 (368)
                      +..|+|..+      .++.++.+.+++.+.+..... ...+ +     ..+...++++.+++++|.   ++|+|++|+++
T Consensus        64 G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~-~~~~-~-----~~~~~~~l~~~la~~~g~---~~v~~~~sGse  133 (433)
T 1z7d_A           64 DKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTI-CSRA-F-----FSVPLGICERYLTNLLGY---DKVLMMNTGAE  133 (433)
T ss_dssp             CCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSC-CCTT-S-----EEHHHHHHHHHHHHHHTC---SEEEEESSHHH
T ss_pred             CCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCC-ccCC-c-----CCHHHHHHHHHHHhhcCC---CeEEEeCCHHH
Confidence            345677543      334789999999998865421 1111 1     134556889999999974   38999999999


Q ss_pred             HHHHHHHHccC-----CCCCCC-CEEEEcCCCCcccHHHHHHHHHH---------cCCEEEEEeCCCCCCCCHHHHHHhc
Q 017640          141 AINLVAYSWGL-----SNLKSG-DEVILTVAEHHSAIVPWQLVAQK---------TGANLKFLNLNDDESPDLDKLKEML  205 (368)
Q Consensus       141 a~~~~~~~~~~-----~~~~~g-d~vl~~~~~~~s~~~~~~~~~~~---------~g~~v~~v~~~~~~~~d~~~l~~~l  205 (368)
                      |+..++.++..     ..+.+| +.|++.++.|++.......+...         ...++..++.+     |+++|++++
T Consensus       134 A~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l  208 (433)
T 1z7d_A          134 ANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYD-----DLEALEEEL  208 (433)
T ss_dssp             HHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTT-----CHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCCC-----CHHHHHHHh
Confidence            99999987521     012467 89999999998765433222110         00345566653     899999999


Q ss_pred             -ccCceEEEEccccccccccc----CHHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEEecCcCcCCCC
Q 017640          206 -SRKTKLVVIHHISNMLASIL----PIEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGPT  275 (368)
Q Consensus       206 -~~~~~~v~~~~~~n~tG~~~----~l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~g~~  275 (368)
                       .+++++|+++..++++|.+.    ++++|.++|++||+++|+|++|+ ++..    .++.....+|++  |++|.+|+.
T Consensus       209 ~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~~G  286 (433)
T 1z7d_A          209 KDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVI--LLGKALSGG  286 (433)
T ss_dssp             TSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTT
T ss_pred             CCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCCCCCEE--EECccccCC
Confidence             57789999998888899876    49999999999999999999997 3221    112223357876  667988742


Q ss_pred             --cceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Q 017640          276 --GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWI  353 (368)
Q Consensus       276 --G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~  353 (368)
                        .+|++++++++++.+.+...+.                  .   .+.|..+.+++.++++.+.+.   .+.++..++.
T Consensus       287 ~~~~G~v~~~~~~~~~l~~~~~~~------------------t---~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~  342 (433)
T 1z7d_A          287 HYPISAVLANDDIMLVIKPGEHGS------------------T---YGGNPLAASICVEALNVLINE---KLCENAEKLG  342 (433)
T ss_dssp             SSCCEEEEECHHHHTTCCTTCCCC------------------T---TTTCHHHHHHHHHHHHHHHHT---THHHHHHHHH
T ss_pred             CCCeEEEEECHHHHhhhccccccc------------------c---CCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHH
Confidence              2899999999887776532211                  1   155677777788888887763   4667888888


Q ss_pred             HHHHHHHHhh
Q 017640          354 ICSIIVIQER  363 (368)
Q Consensus       354 ~~l~~~l~~~  363 (368)
                      +++.+.|.++
T Consensus       343 ~~l~~~L~~l  352 (433)
T 1z7d_A          343 GPFLENLKRE  352 (433)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888888765

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=99.88  E-value=1.4e-20  Score=178.29  Aligned_cols=261  Identities=13%  Similarity=0.015  Sum_probs=173.2

Q ss_pred             CCeEEeccCCC------CCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc-CCC----CCC--cE
Q 017640           66 KKLVYLDNAAT------SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI-NAS----DSG--EI  132 (368)
Q Consensus        66 ~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~-~~~----~~~--~v  132 (368)
                      +++|+|..|.+      .++++.+.++.. .+...... +  .|..    .....++|+++++++ +..    +++  ++
T Consensus        29 ~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~-~--~Y~~----~~G~~~lr~aia~~~~~~~~~~~~~~~i~i  100 (405)
T 3k7y_A           29 EEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKE-K--PYLL----GNGTEDFSTLTQNLIFGNNSKYIEDKKICT  100 (405)
T ss_dssp             SSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCC-C--CCCT----TSSCHHHHHHHHHHHHCSSCTTTTTTCEEE
T ss_pred             cCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCC-C--CCCC----CCCcHHHHHHHHHHHcCCCCccccccceEE
Confidence            56799998863      135778888876 33111111 0  1111    122337888888776 322    123  36


Q ss_pred             EEeCCHHHHHHHHHHHccCCCCC--CCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeC-CC-CCCCCHHHHHHhccc-
Q 017640          133 VFTKNATEAINLVAYSWGLSNLK--SGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL-ND-DESPDLDKLKEMLSR-  207 (368)
Q Consensus       133 ~~t~g~t~a~~~~~~~~~~~~~~--~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~-~~-~~~~d~~~l~~~l~~-  207 (368)
                      ++|+|+++|+.+++.++    ..  + |+|++++|.|+.    +...++..|++++.+++ ++ ++.+|++.|++++++ 
T Consensus       101 ~~t~G~~~al~~~~~~l----~~~~~-d~Vlv~~P~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~  171 (405)
T 3k7y_A          101 IQCIGGTGAIFVLLEFL----KMLNV-ETLYVTNPPYIN----HVNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNI  171 (405)
T ss_dssp             EEEEHHHHHHHHHHHHH----HTTTC-CEEEEESSCCHH----HHHHHHTTTCEEEEECCEETTTTEECHHHHHHHHHHS
T ss_pred             EEcCchHHHHHHHHHHH----HhcCC-CEEEEeCCCCHh----HHHHHHHcCCeEEEEeccccccCCcCHHHHHHHHHhC
Confidence            89999999999999887    44  8 999999997777    45556677999999998 33 478899999999864 


Q ss_pred             -CceEEEEccc-ccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc--------cc-cC-CCCCccEEEecCcCcC
Q 017640          208 -KTKLVVIHHI-SNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM--------VV-DV-QGLDADFLVASSHKMC  272 (368)
Q Consensus       208 -~~~~v~~~~~-~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~--------~~-~~-~~~~~d~~~~s~~K~~  272 (368)
                       ++++++++.+ |||||.+++   +++|+++|++||+++|+|++|.--..        ++ .+ ......+++.|+||.|
T Consensus       172 ~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  251 (405)
T 3k7y_A          172 PNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNM  251 (405)
T ss_dssp             CSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTS
T ss_pred             CCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccC
Confidence             5578877655 899999999   67888999999999999999872111        01 11 1224568899999999


Q ss_pred             CCCc--ceEEEE---cccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH------HHHhC
Q 017640          273 GPTG--IGFLFG---KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY------LSTIG  341 (368)
Q Consensus       273 g~~G--~G~l~~---~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~------~~~~g  341 (368)
                      |.+|  +||+++   ++++++.+.......                 .+.....++..+..++..+++.      +.+ .
T Consensus       252 ~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~-----------------~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~-~  313 (405)
T 3k7y_A          252 SLYGERAGALHIVCKNQEEKKIVFNNLCFI-----------------VRKFYSSPVIHTNRILCQLLNNQNLKLNWIK-E  313 (405)
T ss_dssp             CCTTTTEEEEEEECSSHHHHHHHHHHHHHH-----------------HHTTTSSCCHHHHHHHHHHHHCHHHHHHHHH-H
T ss_pred             CCccccceEEEEEeCCHHHHHHHHHHHHHH-----------------HhcccCCCcHHHHHHHHHHhCCHHHHHHHHH-H
Confidence            9888  999864   445544332111000                 0001113455555555555542      111 2


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 017640          342 MQKIHAYEVKWIICSIIVIQ  361 (368)
Q Consensus       342 ~~~i~~~~~~l~~~l~~~l~  361 (368)
                      +..++++.++.++++.+.|.
T Consensus       314 l~~~~~~~~~~R~~l~~~L~  333 (405)
T 3k7y_A          314 LSQLSQRITNNRILFFNKLE  333 (405)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            56677778888889999888

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.88  E-value=2.6e-21  Score=186.23  Aligned_cols=272  Identities=10%  Similarity=0.037  Sum_probs=180.3

Q ss_pred             CeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHH
Q 017640           67 KLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE  140 (368)
Q Consensus        67 ~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~  140 (368)
                      +..|+|..      ..++.++.+.+++.+.+....  .+..    .....+...++++.++++++.+.+ +|++|+|+++
T Consensus        49 g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~--~~~~----~~~~~~~~~~l~~~la~~~~~~~~-~v~~~~ggse  121 (449)
T 3a8u_X           49 GRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLD--YSPG----FQYGHPLSFQLAEKITDLTPGNLN-HVFFTDSGSE  121 (449)
T ss_dssp             CCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCS--CCCS----SSCCCHHHHHHHHHHHTTSSTTEE-EEEEESSHHH
T ss_pred             CCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCC--Cccc----cccCCHHHHHHHHHHHHhCCCCCC-EEEEcCcHHH
Confidence            34577764      345568999999998876542  1110    001134456899999999986554 8999999999


Q ss_pred             HHHHHHHHccCCC----CCCCCEEEEcCCCCcccHHHHHHHHH------HcC---CEEEEEeCCCCC-----CCC-----
Q 017640          141 AINLVAYSWGLSN----LKSGDEVILTVAEHHSAIVPWQLVAQ------KTG---ANLKFLNLNDDE-----SPD-----  197 (368)
Q Consensus       141 a~~~~~~~~~~~~----~~~gd~vl~~~~~~~s~~~~~~~~~~------~~g---~~v~~v~~~~~~-----~~d-----  197 (368)
                      |+..++.++....    -.+||+|++.++.|++..........      ..+   ..+..++.+..+     .+|     
T Consensus       122 a~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~  201 (449)
T 3a8u_X          122 CALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGG  201 (449)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHH
Confidence            9999998762100    01678999999999976533222210      000   134455543211     146     


Q ss_pred             ---HHHHHHhcc----cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCc
Q 017640          198 ---LDKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDA  261 (368)
Q Consensus       198 ---~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~  261 (368)
                         +++|+++++    +++++|+++..+|+||.+.|    +++|.++|++||+++|+|++|+ ++..    .++.....+
T Consensus       202 ~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~  281 (449)
T 3a8u_X          202 IALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFGVTP  281 (449)
T ss_dssp             HHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCC
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcchhhhhcCCCC
Confidence               899999987    46788888887888999888    9999999999999999999994 6532    112222346


Q ss_pred             cEEEecCcCcCCCCc---ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 017640          262 DFLVASSHKMCGPTG---IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS  338 (368)
Q Consensus       262 d~~~~s~~K~~g~~G---~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~  338 (368)
                      |++  |++|.+++ |   +|++++++++++.+.+...+...        ..+    ......+.+..+.+++.++++.+.
T Consensus       282 di~--s~sK~l~~-G~~~~G~~~~~~~~~~~l~~~~~~~~~--------~~~----~~~~t~~~~~~~~aa~~aal~~~~  346 (449)
T 3a8u_X          282 DLM--CIAKQVTN-GAIPMGAVIASTEIYQTFMNQPTPEYA--------VEF----PHGYTYSAHPVACAAGLAALCLLQ  346 (449)
T ss_dssp             SEE--EECGGGGT-TSSCCEEEEEEHHHHHHHHTCSSCTTS--------CSS----CCCCTTTTCHHHHHHHHHHHHHHH
T ss_pred             CEE--EEcccccC-CCCceEEEEECHHHHHHhhccCccccc--------ccc----cccCCCcccHHHHHHHHHHHHHHH
Confidence            866  66698775 4   89999999887765532110000        000    001122457777888888888877


Q ss_pred             HhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          339 TIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       339 ~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +.   .+.++.+++.+++.+.|.++
T Consensus       347 ~~---~~~~~~~~~~~~l~~~L~~l  368 (449)
T 3a8u_X          347 KE---NLVQSVAEVAPHFEKALHGI  368 (449)
T ss_dssp             HT---THHHHHHHHHHHHHHHHHTT
T ss_pred             hc---CHHHHHHHHHHHHHHHHHHH
Confidence            63   46778888888888888764

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.87  E-value=1.5e-20  Score=180.49  Aligned_cols=253  Identities=11%  Similarity=0.097  Sum_probs=179.6

Q ss_pred             CeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHH
Q 017640           67 KLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE  140 (368)
Q Consensus        67 ~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~  140 (368)
                      +..|+|..+      .++.++.+.+++.+.+...... ... +     ..+...++++.+++++|.   ++|++++|+++
T Consensus        75 g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~~-~~~-~-----~~~~~~~l~~~la~~~g~---~~v~~~~sGse  144 (439)
T 2oat_A           75 GRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLT-SRA-F-----YNNVLGEYEEYITKLFNY---HKVLPMNTGVE  144 (439)
T ss_dssp             CCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSCC-CTT-S-----EESSHHHHHHHHHHHHTC---SEEEEESSHHH
T ss_pred             CCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCcc-cCc-c-----CCHHHHHHHHHHHHhcCC---CEEEEeCCHHH
Confidence            345777543      2347899999999988654211 100 1     123455788999999974   38999999999


Q ss_pred             HHHHHHHHccC-----CCCCCC-CEEEEcCCCCcccHHHHHHHHHHcC------------CEEEEEeCCCCCCCCHHHHH
Q 017640          141 AINLVAYSWGL-----SNLKSG-DEVILTVAEHHSAIVPWQLVAQKTG------------ANLKFLNLNDDESPDLDKLK  202 (368)
Q Consensus       141 a~~~~~~~~~~-----~~~~~g-d~vl~~~~~~~s~~~~~~~~~~~~g------------~~v~~v~~~~~~~~d~~~l~  202 (368)
                      |+..++.++..     ....+| +.|++.++.|++.......   ..|            .+++.++.+     |+++|+
T Consensus       145 A~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~---~~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le  216 (439)
T 2oat_A          145 AGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAIS---SSTDPTSYDGFGPFMPGFDIIPYN-----DLPALE  216 (439)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHT---TCCCHHHHTTSCSCCTTEEEECSS-----CHHHHH
T ss_pred             HHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhh---cCCChhcccCCCCCCCCeEEeCCC-----CHHHHH
Confidence            99999987621     002356 8999999999876533322   222            456777764     899999


Q ss_pred             Hhcc-cCceEEEEccccccccccc----CHHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEEecCcCcC
Q 017640          203 EMLS-RKTKLVVIHHISNMLASIL----PIEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMC  272 (368)
Q Consensus       203 ~~l~-~~~~~v~~~~~~n~tG~~~----~l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~  272 (368)
                      ++++ +++++|+++..++++|.+.    ++++|.++|++||+++|+|++|. ++..    .++.....+|++  |++|.+
T Consensus       217 ~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~~Di~--t~sK~l  294 (439)
T 2oat_A          217 RALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIV--LLGKAL  294 (439)
T ss_dssp             HHTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGG
T ss_pred             HHhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCCCCcEE--Eecccc
Confidence            9994 6788999988888899876    49999999999999999999995 3221    112223357876  677977


Q ss_pred             CCC--cceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH
Q 017640          273 GPT--GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEV  350 (368)
Q Consensus       273 g~~--G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~  350 (368)
                      |+.  .+|++++++++++.+.+...+.                  .|   +.|..+.+++.++++.+.+.   .+.++.+
T Consensus       295 ~~G~~~~G~v~~~~~~~~~l~~~~~~~------------------t~---~~~~~~~aaa~aal~~~~~~---~~~~~~~  350 (439)
T 2oat_A          295 SGGLYPVSAVLCDDDIMLTIKPGEHGS------------------TY---GGNPLGCRVAIAALEVLEEE---NLAENAD  350 (439)
T ss_dssp             GTTSSCCEEEEECHHHHTTSCTTSSCC------------------SS---TTCHHHHHHHHHHHHHHHHT---THHHHHH
T ss_pred             cCCCCCeEEEEECHHHHhccCCCCccc------------------CC---CcCHHHHHHHHHHHHHHhhh---hHHHHHH
Confidence            752  2899999999887776532211                  11   45677777788888887763   5678888


Q ss_pred             HHHHHHHHHHHhh
Q 017640          351 KWIICSIIVIQER  363 (368)
Q Consensus       351 ~l~~~l~~~l~~~  363 (368)
                      ++.+++.+.|.++
T Consensus       351 ~~~~~l~~~L~~l  363 (439)
T 2oat_A          351 KLGIILRNELMKL  363 (439)
T ss_dssp             HHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988765

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.87  E-value=7.7e-21  Score=183.21  Aligned_cols=252  Identities=17%  Similarity=0.142  Sum_probs=171.4

Q ss_pred             CeEEeccCCCC---CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHH
Q 017640           67 KLVYLDNAATS---QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN  143 (368)
Q Consensus        67 ~~i~l~~~~~~---~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~  143 (368)
                      +..|+|..+..   ++++.+.+++..      ...   .+.    ......++|++++++++.+   ++++|+|+++|+.
T Consensus        41 ~~~ylD~~~~~~~~~~~~~~~~a~~~------~~~---~y~----~~~~~~~l~~~la~~~~~~---~~~~~~~gt~a~~  104 (456)
T 2ez2_A           41 KDIYIDLLTDSGTNAMSDKQWAGMMM------GDE---AYA----GSENFYHLERTVQELFGFK---HIVPTHQGRGAEN  104 (456)
T ss_dssp             GGCSEECSCSSSCCCCCHHHHHHHTT------CCC---CSS----SCHHHHHHHHHHHHHHCCS---EEEEESSHHHHHH
T ss_pred             ccceeeeccccCCccCCHHHHHHhhc------chh---hcc----cChhHHHHHHHHHHHhCCC---cEEEeCCcHHHHH
Confidence            44577775432   556777776641      110   111    1344568999999999975   7999999999999


Q ss_pred             HHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC----------CCCCCHHHHHHhcccCc----
Q 017640          144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND----------DESPDLDKLKEMLSRKT----  209 (368)
Q Consensus       144 ~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~----------~~~~d~~~l~~~l~~~~----  209 (368)
                      .++.++    +++||  ++++++|++.+   ...++..|++++.+++++          ++.+|+++|++++++++    
T Consensus       105 ~al~~l----~~~gd--i~~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~  175 (456)
T 2ez2_A          105 LLSQLA----IKPGQ--YVAGNMYFTTT---RYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENI  175 (456)
T ss_dssp             HHHHHH----CCTTC--EEEESSCCHHH---HHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGE
T ss_pred             HHHHHh----CCCCC--Eeccccccchh---HHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccccce
Confidence            999998    78999  77888884432   334456799999998863          26789999999997665    


Q ss_pred             eEEEEccccc-ccccccC---HHHHHHHHHhcCCEEEEecCCcCC---------cccccCC--------CCCccEEEecC
Q 017640          210 KLVVIHHISN-MLASILP---IEEIVHWSHDVGAKVLVDACQSVP---------HMVVDVQ--------GLDADFLVASS  268 (368)
Q Consensus       210 ~~v~~~~~~n-~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~---------~~~~~~~--------~~~~d~~~~s~  268 (368)
                      ++|++++++| |||.++|   +++|.++|++||+++|+|++|+.|         .......        ....|+++.|+
T Consensus       176 ~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~  255 (456)
T 2ez2_A          176 AYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSG  255 (456)
T ss_dssp             EEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEET
T ss_pred             eEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeC
Confidence            8999999998 9999998   999999999999999999999864         1110111        12368888888


Q ss_pred             cCcCCCCcceEEEE-cccccccCCCcccC-CcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHH
Q 017640          269 HKMCGPTGIGFLFG-KSDLLSAMPPFLGG-GEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIH  346 (368)
Q Consensus       269 ~K~~g~~G~G~l~~-~~~li~~l~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~  346 (368)
                      +|+++++.+|+++. ++++++.+...... .+.                . ..+..+...+.++  ++...+... +...
T Consensus       256 kk~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~----------------~-~~~~~~~~~~~a~--a~~~~~~~~-~~~~  315 (456)
T 2ez2_A          256 KKDCLVNIGGFLCMNDDEMFSSAKELVVVYEGM----------------P-SYGGLAGRDMEAM--AIGLREAMQ-YEYI  315 (456)
T ss_dssp             TTTTCCSSCEEEEESCHHHHHHHHHHHHHHTCC----------------T-TTTTCCHHHHHHH--HHHHHHHTC-HHHH
T ss_pred             cccCCCCceeEEEECCHHHHHHHHHHHhhccCc----------------c-cccCcchhHHHHH--HHHHHHHhH-HHHH
Confidence            88766433799988 56777665432210 000                0 0112233333331  233333322 4566


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 017640          347 AYEVKWIICSIIVIQER  363 (368)
Q Consensus       347 ~~~~~l~~~l~~~l~~~  363 (368)
                      ++..++.+++.+.|.+.
T Consensus       316 ~~~~~~~~~l~~~L~~~  332 (456)
T 2ez2_A          316 EHRVKQVRYLGDKLKAA  332 (456)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            77778888888888774

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.86  E-value=1.9e-20  Score=179.68  Aligned_cols=259  Identities=13%  Similarity=0.062  Sum_probs=173.4

Q ss_pred             EEeccCCC------CCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHH
Q 017640           69 VYLDNAAT------SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI  142 (368)
Q Consensus        69 i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~  142 (368)
                      -|+|..+.      ++.++.+.+++.+.+.......      ......+...++++.++++++...+++++||+|+++|+
T Consensus        44 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~------~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~  117 (439)
T 3dxv_A           44 ELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGAT------ILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDAN  117 (439)
T ss_dssp             EEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCSCSC------SSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHH
T ss_pred             EEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcc------ccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHH
Confidence            46666543      2378999999999887642111      01112456678999999999765424999999999999


Q ss_pred             HHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcC--C---------EEEEEeCCCCCCC-----CHHHHHHhc-
Q 017640          143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTG--A---------NLKFLNLNDDESP-----DLDKLKEML-  205 (368)
Q Consensus       143 ~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g--~---------~v~~v~~~~~~~~-----d~~~l~~~l-  205 (368)
                      ..++..+.  ...+++.|++.++.|++.......+.....  .         .+..++.+..+..     |+++|++++ 
T Consensus       118 ~~al~~~~--~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~  195 (439)
T 3dxv_A          118 EAAYRAIV--KATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLA  195 (439)
T ss_dssp             HHHHHHHH--HHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHH--HHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHH
Confidence            99998741  023567888888888876543322211000  0         1123333322222     689999999 


Q ss_pred             ---ccCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCc----ccccCCCCCccEEEecCcCcCC
Q 017640          206 ---SRKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPH----MVVDVQGLDADFLVASSHKMCG  273 (368)
Q Consensus       206 ---~~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~----~~~~~~~~~~d~~~~s~~K~~g  273 (368)
                         .+++++|+++.++|++|.+.|    +++|.++|++||+++|+|++|+ ++.    ...+.....+|++  |++|.+|
T Consensus       196 ~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~--s~sK~~~  273 (439)
T 3dxv_A          196 AVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDIL--VLGKGLG  273 (439)
T ss_dssp             TSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCSEE--EECGGGG
T ss_pred             hcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCCEE--EEcchhc
Confidence               457899999999999999999    9999999999999999999997 321    1223333457776  7779877


Q ss_pred             CCc--ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Q 017640          274 PTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVK  351 (368)
Q Consensus       274 ~~G--~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~  351 (368)
                      + |  +|++++++++++.+.+...+                     ... .+..+..++.++++.+.+   +.+.++.++
T Consensus       274 ~-G~riG~~~~~~~~~~~~~~~~~~---------------------~t~-~~~~~~~aa~aal~~~~~---~~~~~~~~~  327 (439)
T 3dxv_A          274 G-GLPLSAVIAPAEILDCASAFAMQ---------------------TLH-GNPISAAAGLAVLETIDR---DDLPAMAER  327 (439)
T ss_dssp             T-TSCCEEEEEEHHHHTSCSSSSCC---------------------TTT-TCHHHHHHHHHHHHHHHH---TTHHHHHHH
T ss_pred             C-CcceEEEEECHHHHhhhcCCCcC---------------------CCc-ccHHHHHHHHHHHHHHHh---cCHHHHHHH
Confidence            4 5  89999999998877654211                     112 456666777777777665   344566666


Q ss_pred             HHHHHHHHHHhh
Q 017640          352 WIICSIIVIQER  363 (368)
Q Consensus       352 l~~~l~~~l~~~  363 (368)
                      +.+++.+.|.++
T Consensus       328 ~~~~~~~~l~~~  339 (439)
T 3dxv_A          328 KGRLLRDGLSEL  339 (439)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666666666553

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.86  E-value=1.7e-21  Score=188.28  Aligned_cols=254  Identities=15%  Similarity=0.101  Sum_probs=167.9

Q ss_pred             CeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHH
Q 017640           67 KLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVA  146 (368)
Q Consensus        67 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~  146 (368)
                      +..|+|....... +.+.+++.+.+...  ..   .+.    ......+++++++++++.+   +|++|+|+|+|+..++
T Consensus        42 g~~ylD~~~~~~~-~~v~~a~~~~~~~~--~~---~y~----~~~~~~~l~~~la~~~~~~---~v~~t~ggt~A~~~al  108 (467)
T 1ax4_A           42 SAVYIDLLTDSGT-NAMSDHQWAAMITG--DE---AYA----GSRNYYDLKDKAKELFNYD---YIIPAHQGRGAENILF  108 (467)
T ss_dssp             GGCSEECSCSSSC-CCEEHHHHHHHHTC--CC---CSS----SCHHHHHHHHHHHHHHCCC---EEEEESSHHHHHHHHH
T ss_pred             CceeeecccCcCC-HHHHHHHHHHHhhc--cc---ccc----cCccHHHHHHHHHHHcCCC---cEEEcCCcHHHHHHHH
Confidence            3457887554433 56666666655421  10   111    1234558899999999873   8999999999999999


Q ss_pred             HHccCCCCC----CCCE---EEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC----------CCCCCHHHHHHhccc--
Q 017640          147 YSWGLSNLK----SGDE---VILTVAEHHSAIVPWQLVAQKTGANLKFLNLND----------DESPDLDKLKEMLSR--  207 (368)
Q Consensus       147 ~~~~~~~~~----~gd~---vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~----------~~~~d~~~l~~~l~~--  207 (368)
                      .++    .+    +||+   |+++ ..|+..   +.......|.+++.++...          ++.+|+++|++++++  
T Consensus       109 ~~~----~~~~~~~Gd~~~~viv~-~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~  180 (467)
T 1ax4_A          109 PVL----LKYKQKEGKAKNPVFIS-NFHFDT---TAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHG  180 (467)
T ss_dssp             HHH----HHHHHHTTCCSSCEEEE-SSCCHH---HHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHC
T ss_pred             HHH----HHhhccCCCccceEEEe-ccccch---hhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcC
Confidence            988    66    8998   8888 444332   3334455688888776431          457899999999974  


Q ss_pred             --CceEEEEccccccc-ccccC---HHHHHHHHHhcCCEEEEecCCcC-----------CcccccCCC------CCccEE
Q 017640          208 --KTKLVVIHHISNML-ASILP---IEEIVHWSHDVGAKVLVDACQSV-----------PHMVVDVQG------LDADFL  264 (368)
Q Consensus       208 --~~~~v~~~~~~n~t-G~~~~---l~~i~~l~~~~g~~li~D~a~~~-----------~~~~~~~~~------~~~d~~  264 (368)
                        ++++|++++++||+ |.++|   +++|.++|++||+++|+|+++..           +....++..      ...|++
T Consensus       181 ~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  260 (467)
T 1ax4_A          181 ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADAL  260 (467)
T ss_dssp             GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEE
T ss_pred             CCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceE
Confidence              68999999999999 88877   67999999999999999998765           222222111      236889


Q ss_pred             EecCcCcCCCCcceEEEEc-c-cccccCCCccc--CCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 017640          265 VASSHKMCGPTGIGFLFGK-S-DLLSAMPPFLG--GGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI  340 (368)
Q Consensus       265 ~~s~~K~~g~~G~G~l~~~-~-~li~~l~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~  340 (368)
                      ++|+||.+|++-.|+++.+ + ++++.+.....  ++.                  ...++.+...+.++..+++...+ 
T Consensus       261 ~~s~sK~~g~~~Gg~~~~~d~~~l~~~~~~~~~~~~~~------------------~~~~~~~~~~~~a~~~~l~~~~~-  321 (467)
T 1ax4_A          261 TMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGF------------------VTYGGLAGRDMAAMVQGLEEGTE-  321 (467)
T ss_dssp             EEETTSTTCCSSCEEEEESSCHHHHHHHHHHHHHHTCS------------------TTTTTCCHHHHHHHHHHHHHTTC-
T ss_pred             EEeccccCCCCcceEEEeCCHHHHHHHHHhhccccccc------------------cccCCccchHHHHHHHHHHHhhh-
Confidence            9999999887622777777 6 67665543211  111                  12235555555555545543221 


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHh
Q 017640          341 GMQKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       341 g~~~i~~~~~~l~~~l~~~l~~  362 (368)
                       .+.+ ++..++.+++.+.|.+
T Consensus       322 -~~~~-~~~~~~~~~l~~~L~~  341 (467)
T 1ax4_A          322 -EEYL-HYRIGQVKYLGDRLRE  341 (467)
T ss_dssp             -HHHH-HHHHHHHHHHHHHHHH
T ss_pred             -hhHH-HHHHHHHHHHHHHHHh
Confidence             1222 3334666777777766

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.85  E-value=9.6e-21  Score=186.19  Aligned_cols=210  Identities=15%  Similarity=0.092  Sum_probs=148.9

Q ss_pred             eEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc-----C--CC--CCCcEEEeCCH
Q 017640           68 LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI-----N--AS--DSGEIVFTKNA  138 (368)
Q Consensus        68 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~-----~--~~--~~~~v~~t~g~  138 (368)
                      .+.|..+..+..++.+.+++.+.+.. ..++.....      .    .+|+++++.+     +  ..  ++++|++|+|+
T Consensus       106 ~i~l~~g~~~~~~~~~~~al~~~~~~-~~Y~~~~g~------~----~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~  174 (546)
T 2zy4_A          106 SLSYVRDQLGLDPAAFLHEMVDGILG-CNYPVPPRM------L----NISEKIVRQYIIREMGADAIPSESVNLFAVEGG  174 (546)
T ss_dssp             HHHHHHHTSCCCHHHHHHHHHHHHHT-CSCCSSSSC------C----HHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHH
T ss_pred             hhecccCCCCCCChHHHHHHHHhhhc-CCCCCCcCC------H----HHHHHHHHHHHHHhccCCCCCCCcceEEEECCH
Confidence            56666666676677777777766532 222221111      1    3454444433     2  21  23599999999


Q ss_pred             HHHHHHHHHHcc-CCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC--CCCCHHHHHHhcccCceEEEEc
Q 017640          139 TEAINLVAYSWG-LSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLVVIH  215 (368)
Q Consensus       139 t~a~~~~~~~~~-~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~l~~~~~~v~~~  215 (368)
                      ++++..++.++. +..+++||.|++.+|.|++......  ....|++++.++.+++  +.+|+++|++.+.+++++|+++
T Consensus       175 ~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~  252 (546)
T 2zy4_A          175 TAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPE--LAQYALEEVAINADPSLNWQYPDSELDKLKDPAIKIFFCV  252 (546)
T ss_dssp             HHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHH--STTSCCEEEEEECBGGGTTBCCHHHHGGGGSTTEEEEEEE
T ss_pred             HHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHH--HcCCCcEEEEEecCcccCCCCCHHHHHHhhCCCCeEEEEE
Confidence            999999998731 1116899999999998887543211  1234789999998744  5689999999888889999999


Q ss_pred             ccccccccccC---HHHHHHHH--HhcCCEEEEecCCcCCcc-cccCC--CCCccEEEecCcCcCCCCc--ceEEEEccc
Q 017640          216 HISNMLASILP---IEEIVHWS--HDVGAKVLVDACQSVPHM-VVDVQ--GLDADFLVASSHKMCGPTG--IGFLFGKSD  285 (368)
Q Consensus       216 ~~~n~tG~~~~---l~~i~~l~--~~~g~~li~D~a~~~~~~-~~~~~--~~~~d~~~~s~~K~~g~~G--~G~l~~~~~  285 (368)
                      +++||||.+++   +++|.++|  +++|++||+|++|+.... ...+.  ..+.++++.|+||.+|.+|  +||++++++
T Consensus       253 ~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~  332 (546)
T 2zy4_A          253 NPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATGWRLGVVAAHQQ  332 (546)
T ss_dssp             SSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGGGCEEEEEEESS
T ss_pred             CCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCCcceEEEEECCH
Confidence            99999999999   66788888  789999999999983321 11111  1246899999999999888  899999886


Q ss_pred             -ccccC
Q 017640          286 -LLSAM  290 (368)
Q Consensus       286 -li~~l  290 (368)
                       +++.+
T Consensus       333 ~l~~~l  338 (546)
T 2zy4_A          333 NVFDLA  338 (546)
T ss_dssp             CHHHHH
T ss_pred             HHHHHH
Confidence             66554

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.85  E-value=2.9e-20  Score=178.14  Aligned_cols=256  Identities=17%  Similarity=0.137  Sum_probs=171.1

Q ss_pred             CeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHH
Q 017640           67 KLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE  140 (368)
Q Consensus        67 ~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~  140 (368)
                      +.-|+|..+      .|+.++.+.+++.+.+.....+   + +     ..+...+++++++++++ .. ++|+|++|+++
T Consensus        54 g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~---~-~-----~~~~~~~l~~~la~~~~-~~-~~v~~~~sGse  122 (434)
T 3l44_A           54 GNKYIDYLAAYGPIITGHAHPHITKAITTAAENGVLY---G-T-----PTALEVKFAKMLKEAMP-AL-DKVRFVNSGTE  122 (434)
T ss_dssp             CCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCSCC---S-S-----CCHHHHHHHHHHHHHCT-TC-SEEEEESSHHH
T ss_pred             CCEEEECCCchhccccCCCCHHHHHHHHHHHHhCcCC---C-C-----CCHHHHHHHHHHHHhCC-CC-CEEEEeCchHH
Confidence            345777653      3356999999999988763211   1 1     12445578899999997 33 49999999999


Q ss_pred             HHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHH----------------cCCEEEEEeCCCCCCCCHHHHHHh
Q 017640          141 AINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK----------------TGANLKFLNLNDDESPDLDKLKEM  204 (368)
Q Consensus       141 a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~----------------~g~~v~~v~~~~~~~~d~~~l~~~  204 (368)
                      |+..++..+..  ..+++.|++.++.|++...........                ...++..+|.+     |+++|+++
T Consensus       123 a~~~ai~~a~~--~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~  195 (434)
T 3l44_A          123 AVMTTIRVARA--YTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFN-----NVETLKEA  195 (434)
T ss_dssp             HHHHHHHHHHH--HHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTT-----CHHHHHHH
T ss_pred             HHHHHHHHHHH--hhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcc-----cHHHHHHH
Confidence            99999987621  136789999999998754321111000                00123334433     89999998


Q ss_pred             cc---cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCcC---Ccc-cccCCCCCccEEEecCcCcCC
Q 017640          205 LS---RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQSV---PHM-VVDVQGLDADFLVASSHKMCG  273 (368)
Q Consensus       205 l~---~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~~---~~~-~~~~~~~~~d~~~~s~~K~~g  273 (368)
                      ++   +++++|+++.+++++|.+.|    +++|.++|++||+++|+||+|.-   |.. ..+.....+|++  +++|.+|
T Consensus       196 l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~g~~~~~~~~~~~~di~--t~sK~~~  273 (434)
T 3l44_A          196 LDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFMYGGAQDLLGVTPDLT--ALGKVIG  273 (434)
T ss_dssp             HHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTSSSSCHHHHHTCCCSEE--EEEGGGG
T ss_pred             HHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceeccccHHHHHcCCCCCee--ehhhhhc
Confidence            87   46788888888888999887    99999999999999999999972   211 111122346765  4569776


Q ss_pred             C-CcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Q 017640          274 P-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKW  352 (368)
Q Consensus       274 ~-~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l  352 (368)
                      + -.+|++++++++++.+.+....                  ......+.+..+.+++.++++.+.+   +.+.++..++
T Consensus       274 ~G~~iG~~~~~~~i~~~~~~~~~~------------------~~~~t~~~~~~a~aaa~aal~~~~~---~~~~~~~~~~  332 (434)
T 3l44_A          274 GGLPIGAYGGKKEIMEQVAPLGPA------------------YQAGTMAGNPASMASGIACLEVLQQ---EGLYEKLDEL  332 (434)
T ss_dssp             TTSSCEEEEECHHHHTTBTTTSSB------------------CCCCTTTTCHHHHHHHHHHHHHHTS---TTHHHHHHHH
T ss_pred             CCcCeeeEEEcHHHHHhhccCCCc------------------ccCCCCCcCHHHHHHHHHHHHHHHc---ccHHHHHHHH
Confidence            2 2399999999998877642100                  0111225677777777788887654   4455666666


Q ss_pred             HHHHHHHHHhh
Q 017640          353 IICSIIVIQER  363 (368)
Q Consensus       353 ~~~l~~~l~~~  363 (368)
                      .+++.+.|.++
T Consensus       333 ~~~l~~~L~~~  343 (434)
T 3l44_A          333 GATLEKGILEQ  343 (434)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            67776666653

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.85  E-value=8.9e-21  Score=189.54  Aligned_cols=221  Identities=11%  Similarity=0.070  Sum_probs=169.6

Q ss_pred             HHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC
Q 017640          112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN  191 (368)
Q Consensus       112 ~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~  191 (368)
                      .+.++++.+|+++|++.  .+++++|++.|+..++.++    +++||.|++..++|.|+...    +...|+++++++.+
T Consensus       196 ~i~eaE~~lA~~fGa~~--a~~v~nGts~An~~ai~al----~~pGD~VLv~r~~H~S~~~~----l~lsGa~pv~v~~~  265 (715)
T 3n75_A          196 PHKEAEQYIARVFNADR--SYMVTNGTSTANKIVGMYS----APAGSTILIDRNCHKSLTHL----MMMSDVTPIYFRPT  265 (715)
T ss_dssp             HHHHHHHHHHHHHTCSE--EEEESSHHHHHHHHHHHHH----CCTTCEEEEESSCCHHHHHH----HHHSCCEEEEECCC
T ss_pred             HHHHHHHHHHHHhCCCC--ceEECcHHHHHHHHHHHHh----CCCCCEEEECCCccHHHHHH----HHHcCCEEEEEecc
Confidence            47789999999999973  5667778789999999998    89999999999999997654    45679999999876


Q ss_pred             CC-C----CC-----CHHHHHHhccc--Cce---EEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcc--cc
Q 017640          192 DD-E----SP-----DLDKLKEMLSR--KTK---LVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM--VV  254 (368)
Q Consensus       192 ~~-~----~~-----d~~~l~~~l~~--~~~---~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~--~~  254 (368)
                      .+ +    .+     |++.|++++++  +++   +++++++ |++|.++|+++|.++|++++  +++|++|+.+..  +.
T Consensus       266 ~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~~  342 (715)
T 3n75_A          266 RNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPI  342 (715)
T ss_dssp             BCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSGG
T ss_pred             ccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEccccccccccCCc
Confidence            43 2    23     89999999974  334   8899999 99999999999999998774  799999986531  11


Q ss_pred             --cCCCC----CccEE---EecCcCcCC-CCcceEEEEcccccc-cCCCcccCCcceeecccCCCCCCCCCCCCCCCCCC
Q 017640          255 --DVQGL----DADFL---VASSHKMCG-PTGIGFLFGKSDLLS-AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPA  323 (368)
Q Consensus       255 --~~~~~----~~d~~---~~s~~K~~g-~~G~G~l~~~~~li~-~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~  323 (368)
                        +....    +.|++   +.|+||.++ +.+.|++++++++.. .+....                    ..+.+++++
T Consensus       343 ~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~~~~~~~--------------------~~~~STSps  402 (715)
T 3n75_A          343 YEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAY--------------------MMHTTTSPH  402 (715)
T ss_dssp             GTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHHHHHHHH--------------------HHTSCSSCC
T ss_pred             cccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCchhhHHHHHHHH--------------------HhhcCCCch
Confidence              11111    25665   899999665 557899999876311 111110                    123467899


Q ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcC
Q 017640          324 IGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHN  365 (368)
Q Consensus       324 ~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g  365 (368)
                      ++.++++.++++++.....+.+.++..+++.++++.|.++++
T Consensus       403 y~~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~  444 (715)
T 3n75_A          403 YGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRT  444 (715)
T ss_dssp             HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999987522355789999999999999988753

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.85  E-value=1.9e-20  Score=179.07  Aligned_cols=265  Identities=14%  Similarity=0.060  Sum_probs=164.8

Q ss_pred             eEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHH
Q 017640           68 LVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEA  141 (368)
Q Consensus        68 ~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a  141 (368)
                      .-|+|..+      .|+.++.+.+++.+.+........      .....+...+++++++++++.+.+ +|++|+|+++|
T Consensus        29 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~------~~~~~~~~~~l~~~la~~~~~~~~-~v~~~~gg~ea  101 (430)
T 3i4j_A           29 RRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHG------SQFSSDVLEEYAGRLARFVGLPTF-RFWAVSGGSEA  101 (430)
T ss_dssp             CEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCT------TTCEEHHHHHHHHHHHHHTTCTTC-EEEEESSHHHH
T ss_pred             CEEEECCCchhccccCCCCHHHHHHHHHHHHhcccccc------cccCCHHHHHHHHHHHHhCCCCCC-EEEEeCcHHHH
Confidence            34666653      334589999999998876421111      011234566889999999987665 99999999999


Q ss_pred             HHHHHHHccCC----CCCCCCEEEEcCCCCcccHHHHHHHHHHcCC-----------EEEEEeCCCC---CCCCHHHHHH
Q 017640          142 INLVAYSWGLS----NLKSGDEVILTVAEHHSAIVPWQLVAQKTGA-----------NLKFLNLNDD---ESPDLDKLKE  203 (368)
Q Consensus       142 ~~~~~~~~~~~----~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~-----------~v~~v~~~~~---~~~d~~~l~~  203 (368)
                      +..++.++...    .-.+++.|++.++.|++..............           .+..++.+..   +..|+++|++
T Consensus       102 ~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~  181 (430)
T 3i4j_A          102 TESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRA  181 (430)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHH
Confidence            99999876210    0045789999999998865433222111000           2233333222   2235688888


Q ss_pred             hcc----cCceEEEEccccc-ccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCC-CCCccEEEecC
Q 017640          204 MLS----RKTKLVVIHHISN-MLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQ-GLDADFLVASS  268 (368)
Q Consensus       204 ~l~----~~~~~v~~~~~~n-~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~-~~~~d~~~~s~  268 (368)
                      +++    +++++|+++.+++ ++|.+.+    +++|.++|++||+++|+||+|+ ++..    ..+.. ...+|+++  +
T Consensus       182 ~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~~~~di~t--~  259 (430)
T 3i4j_A          182 LLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPDIAV--L  259 (430)
T ss_dssp             HHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTTCCCSEEE--E
T ss_pred             HHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhhhcCCCCcEEE--E
Confidence            886    4567888888888 9998877    9999999999999999999987 4322    12222 33467665  5


Q ss_pred             cCcCCCCc---ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 017640          269 HKMCGPTG---IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI  345 (368)
Q Consensus       269 ~K~~g~~G---~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i  345 (368)
                      +|.+++ |   +|++++++++++.+.+....  .               ......+.+..+.+++.++++.+.+.   .+
T Consensus       260 sK~l~~-G~~r~G~~~~~~~i~~~~~~~~~~--~---------------~~~~t~~~~~~~~aaa~aal~~~~~~---~~  318 (430)
T 3i4j_A          260 GKGLAA-GYAPLAGLLAAPQVYETVMGGSGA--F---------------MHGFTYAGHPVSVAAGLSVLDIVERE---DL  318 (430)
T ss_dssp             CGGGTT-TSSCCEEEEECHHHHHHHHHTTCB--C---------------CCCCTTTTCHHHHHHHHHHHHHHHHT---TH
T ss_pred             cccccC-CccccEEEEECHHHHHHHhccCCc--c---------------cccCCCCCCHHHHHHHHHHHHHHHcc---cH
Confidence            698775 4   79999999988776532100  0               00111256777777888888877653   34


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 017640          346 HAYEVKWIICSIIVIQE  362 (368)
Q Consensus       346 ~~~~~~l~~~l~~~l~~  362 (368)
                      .++.+++.+++.+.|.+
T Consensus       319 ~~~~~~~~~~~~~~l~~  335 (430)
T 3i4j_A          319 TGAAKERGAQLLAGLQA  335 (430)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44555555555555543

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.85  E-value=2.1e-20  Score=179.02  Aligned_cols=263  Identities=9%  Similarity=-0.014  Sum_probs=175.3

Q ss_pred             CeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHH
Q 017640           67 KLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE  140 (368)
Q Consensus        67 ~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~  140 (368)
                      +..|+|...      .++.++.+.+++.+.+.... +...+ +     ..+...++++.++++++.+. ++|++|+|+++
T Consensus        42 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~-~-----~~~~~~~l~~~la~~~~~~~-~~v~~~~gg~e  113 (433)
T 1zod_A           42 GRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLD-HLFSE-M-----LSRPVVDLATRLANITPPGL-DRALLLSTGAE  113 (433)
T ss_dssp             CCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCC-CCCTT-C-----CCHHHHHHHHHHHHHSCTTC-CEEEEESCHHH
T ss_pred             CCEEEEcccchhccccCCCCHHHHHHHHHHHHhCc-ccccc-c-----CCHHHHHHHHHHHHhCCCCc-CEEEEeCchHH
Confidence            345677632      34568999999999887642 11111 1     12445688899999998765 49999999999


Q ss_pred             HHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHH-----Hc---CCEEEEEeCCCC----C--------CCCHHH
Q 017640          141 AINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQ-----KT---GANLKFLNLNDD----E--------SPDLDK  200 (368)
Q Consensus       141 a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~-----~~---g~~v~~v~~~~~----~--------~~d~~~  200 (368)
                      |+..++..+..  ...++.|++.+|.|++..........     ..   ...++.++.+..    +        .+|+++
T Consensus       114 a~~~a~~~~~~--~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~  191 (433)
T 1zod_A          114 SNEAAIRMAKL--VTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDY  191 (433)
T ss_dssp             HHHHHHHHHHH--HHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHH
T ss_pred             HHHHHHHHHHH--hhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHH
Confidence            99999986510  13467999999999876543222110     00   113444544321    1        236899


Q ss_pred             HHHhcc----cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCccc----ccCCCCCccEEEec
Q 017640          201 LKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLDADFLVAS  267 (368)
Q Consensus       201 l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~~----~~~~~~~~d~~~~s  267 (368)
                      |+++++    +++++|+++..+|+||.+.+    +++|.++|++||+++|+|++|+ ++...    ++.....+|++  |
T Consensus       192 le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~--s  269 (433)
T 1zod_A          192 AFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDIL--T  269 (433)
T ss_dssp             HHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--E
T ss_pred             HHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCCCCCEE--E
Confidence            999987    46778888777789998766    9999999999999999999998 54321    12122346665  6


Q ss_pred             CcCcCCC-CcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHH
Q 017640          268 SHKMCGP-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIH  346 (368)
Q Consensus       268 ~~K~~g~-~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~  346 (368)
                      ++|.+|+ -++|++++++++++.+.+...                   .+....+.|..+.+++.++++.+.+.   .+.
T Consensus       270 ~sK~~~~G~~ig~~~~~~~~~~~~~~~~~-------------------~~~~t~~~~~~~~~a~~aal~~~~~~---~~~  327 (433)
T 1zod_A          270 LSKTLGAGLPLAAIVTSAAIEERAHELGY-------------------LFYTTHVSDPLPAAVGLRVLDVVQRD---GLV  327 (433)
T ss_dssp             ECHHHHTTSSCEEEEECHHHHHHHHHTTC-------------------CCCCTTTTCHHHHHHHHHHHHHHHHT---THH
T ss_pred             ecccccCCCCeeEEEEhHHHHHhhccCCC-------------------CCCCCCCcCHHHHHHHHHHHHHHHhC---CHH
Confidence            6797765 238999999988776653110                   00011245777888888889887763   346


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 017640          347 AYEVKWIICSIIVIQER  363 (368)
Q Consensus       347 ~~~~~l~~~l~~~l~~~  363 (368)
                      ++.+++.+++.+.|+++
T Consensus       328 ~~~~~~~~~l~~~l~~l  344 (433)
T 1zod_A          328 ARANVMGDRLRRGLLDL  344 (433)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            77777777777777654

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.85  E-value=6.4e-20  Score=176.73  Aligned_cols=246  Identities=13%  Similarity=0.038  Sum_probs=157.9

Q ss_pred             CCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCC
Q 017640           77 SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKS  156 (368)
Q Consensus        77 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~  156 (368)
                      ++.++.+.+++.+.+....   +.+.      ..+...++.+.+++.++ .. ++|++++|+++|+..++.+..  .+.+
T Consensus        72 g~~~~~v~~a~~~~~~~~~---~~~~------~~~~~~~la~~l~~~~~-~~-~~v~~~~gg~eA~~~al~~ar--~~~~  138 (453)
T 2cy8_A           72 GHGHPRVNAAIAEALSHGV---QYAA------SHPLEVRWAERIVAAFP-SI-RKLRFTGSGTETTLLALRVAR--AFTG  138 (453)
T ss_dssp             CBTCHHHHHHHHHHHTTTC---SSCS------SCHHHHHHHHHHHHHCT-TC-SEEEEESCHHHHHHHHHHHHH--HHHC
T ss_pred             CCCCHHHHHHHHHHHHhCC---CCCC------CCHHHHHHHHHHHhhCC-CC-CEEEEeCCHHHHHHHHHHHHH--HhhC
Confidence            4578999999998886521   1111      24555678888888876 33 489999999999999998721  0124


Q ss_pred             CCEEEEcCCCCcccHHHHHHHHH-------HcCC------EEEEEeCCCCCCCCHHHHHHhcc---cCceEEEEcccccc
Q 017640          157 GDEVILTVAEHHSAIVPWQLVAQ-------KTGA------NLKFLNLNDDESPDLDKLKEMLS---RKTKLVVIHHISNM  220 (368)
Q Consensus       157 gd~vl~~~~~~~s~~~~~~~~~~-------~~g~------~v~~v~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~n~  220 (368)
                      ++.|++.++.|++..........       ..|+      ++..++..     |+++|+++++   +++++|+++..+|+
T Consensus       139 ~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~ep~~~~  213 (453)
T 2cy8_A          139 RRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRPD-----DIEGMREVFANHGSDIAAFIAEPVGSH  213 (453)
T ss_dssp             CCEEEEECC----------------------------CGGGEEEECTT-----CHHHHHHHHHHHGGGEEEEEECSSEHH
T ss_pred             CCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCCC-----CHHHHHHHHHhcCCCEEEEEECCCCCC
Confidence            56888888988875543322110       0132      23444432     8999999987   46788888888888


Q ss_pred             cccccC----HHHHHHHHHhcCCEEEEecCCcCCcc-----cccCCCCCccEEEecCcCcCCC-CcceEEEEcccccccC
Q 017640          221 LASILP----IEEIVHWSHDVGAKVLVDACQSVPHM-----VVDVQGLDADFLVASSHKMCGP-TGIGFLFGKSDLLSAM  290 (368)
Q Consensus       221 tG~~~~----l~~i~~l~~~~g~~li~D~a~~~~~~-----~~~~~~~~~d~~~~s~~K~~g~-~G~G~l~~~~~li~~l  290 (368)
                      ||.+.|    +++|.++|++||+++|+|++|+ +..     .++.....+|++  |++|.+|+ ..+|++++++++++.+
T Consensus       214 tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~v~~~~~~~~~l  290 (453)
T 2cy8_A          214 FGVTPVSDSFLREGAELARQYGALFILDEVIS-GFRVGNHGMQALLDVQPDLT--CLAKASAGGLPGGILGGREDVMGVL  290 (453)
T ss_dssp             HHTEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTCTTHHHHHHTCCCSEE--EEEGGGGTTSSCEEEEECHHHHTTS
T ss_pred             CCCcCCCHHHHHHHHHHHHHcCCEEEEecCcc-ccccCchhhhHHhCCCCcEE--EEChhhhCCcceEEEechHHHHHHh
Confidence            999887    9999999999999999999998 321     111112346765  67797764 2389999999988877


Q ss_pred             CCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          291 PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY-LSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       291 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~-~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      .+...+..                ......+.|..+.+++.++++. + .   +.+.++.+++.+++.+.|.++
T Consensus       291 ~~~~~~~~----------------~~~~t~~~n~~~~aa~~aal~~~~-~---~~~~~~~~~~~~~l~~~L~~~  344 (453)
T 2cy8_A          291 SRGSDRKV----------------LHQGTFTGNPITAAAAIAAIDTIL-E---DDVCAKINDLGQFAREAMNHL  344 (453)
T ss_dssp             SSCC-------------------------CCCCHHHHHHHHHHHHHHH-H---TTHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCc----------------eeCCCCCCCHHHHHHHHHHHHHHh-h---hhHHHHHHHHHHHHHHHHHHH
Confidence            65211100                0111225677777777788887 5 3   345677788888888877654

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.84  E-value=6.1e-21  Score=177.96  Aligned_cols=192  Identities=16%  Similarity=0.161  Sum_probs=138.4

Q ss_pred             CcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCC
Q 017640           79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD  158 (368)
Q Consensus        79 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd  158 (368)
                      +++.+.+++.+.+.    .   ..+    ...+...++++++++++|.+.   .++++|+++++..++.++    ..+||
T Consensus        27 ~~p~v~~ai~~~~~----~---~~~----~~~~~~~~l~~~la~~~~~~~---~i~~~~g~~a~~~a~~~~----~~~g~   88 (359)
T 3pj0_A           27 VLTEALQNIDDNLE----S---DIY----GNGAVIEDFETKIAKILGKQS---AVFFPSGTMAQQIALRIW----ADRKE   88 (359)
T ss_dssp             HHHHHTTTSCTTCB----C---CBT----TBSHHHHHHHHHHHHHHTCSE---EEEESCHHHHHHHHHHHH----HHHHT
T ss_pred             CCHHHHHHHHhhcc----c---Ccc----cCCHHHHHHHHHHHHHhCCCc---EEEeCCHHHHHHHHHHHH----HhcCC
Confidence            46777777766221    1   111    113456689999999999863   366688899999999988    66777


Q ss_pred             E--EEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEccccccc-ccccCHH---HHHH
Q 017640          159 E--VILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNML-ASILPIE---EIVH  232 (368)
Q Consensus       159 ~--vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~t-G~~~~l~---~i~~  232 (368)
                      .  |++..+.|.+.+. ....+...|++++.++. +++.+|+++|+++ .+++++|++++++||+ |.++|.+   +|.+
T Consensus        89 ~~vvi~~~~~~~~~~~-~~~~~~~~g~~~~~v~~-~~~~~d~~~l~~~-~~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~  165 (359)
T 3pj0_A           89 NRRVAYHPLSHLEIHE-QDGLKELQQITPLLLGT-ANQLLTIDDIKSL-REPVSSVLIELPQREIGGQLPAFEELEKISE  165 (359)
T ss_dssp             CCEEEECTTCHHHHSS-TTHHHHHHCCEEEECSC-TTSCCCHHHHHTC-SSCCSEEEEESSBGGGTSBCCCHHHHHHHHH
T ss_pred             CcEEEEeccceeeehh-cchHHHhcCceEEecCC-cCCCcCHHHHHhc-cCCceEEEEEecccCCCcccCCHHHHHHHHH
Confidence            6  5555554443221 11222345999999987 5688899999998 7789999999999998 7998855   4599


Q ss_pred             HHHhcCCEEEEecCCcCCcc------cccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCC
Q 017640          233 WSHDVGAKVLVDACQSVPHM------VVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPP  292 (368)
Q Consensus       233 l~~~~g~~li~D~a~~~~~~------~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~  292 (368)
                      +|++||+++|+|++|..+..      ..++. .+.|+++.|+||.+++++.|+++.++++++.++.
T Consensus       166 ~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~-~~~d~~~~s~sK~~~~~~gg~~~~~~~l~~~~~~  230 (359)
T 3pj0_A          166 YCHEQGISLHLDGARLWEITPFYQKSAEEIC-ALFDSVYVSFYKGIGGIAGAILAGNDDFVQEAKI  230 (359)
T ss_dssp             HHHHHTCEEEEEETTCGGGHHHHTCCHHHHH-TTCSEEEEESSSTTCCSSCEEEEECHHHHHHHHH
T ss_pred             HHHHcCCEEEEECcchhcchhhhCCCHHHhh-ccCCEEEEeccccCCCcceEEEECCHHHHHHHHH
Confidence            99999999999999875432      11111 3578999999997664444888899988877653

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.84  E-value=3.4e-20  Score=178.51  Aligned_cols=265  Identities=8%  Similarity=-0.030  Sum_probs=176.7

Q ss_pred             CeEEeccC------CCCCCcHHHH-H-HHHH---HHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEe
Q 017640           67 KLVYLDNA------ATSQKPIAVL-K-ALQN---YYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFT  135 (368)
Q Consensus        67 ~~i~l~~~------~~~~~~~~v~-~-a~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t  135 (368)
                      +..|+|..      ..++.++.+. + ++.+   .+...   .+.+.    ....+...++++.++++++....++|+|+
T Consensus        53 g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~---~~~~~----~~~~~~~~~la~~la~~~~~~~~~~v~~~  125 (449)
T 2cjg_A           53 GRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALN---KPSNS----DVYSVAMARFVETFARVLGDPALPHLFFV  125 (449)
T ss_dssp             CCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTC---CCCTT----TCCCHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred             CcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhc---CCCCc----ccCCHHHHHHHHHHHHhcCCCCCCEEEEe
Confidence            44677762      3455689999 9 9998   54432   11110    01234456889999999973223499999


Q ss_pred             CCHHHHHHHHHHHccCCCCC-----------CCCEEEEcCCCCcccHHHHHHHH-----HHcCC-----EEEEEeCCC--
Q 017640          136 KNATEAINLVAYSWGLSNLK-----------SGDEVILTVAEHHSAIVPWQLVA-----QKTGA-----NLKFLNLND--  192 (368)
Q Consensus       136 ~g~t~a~~~~~~~~~~~~~~-----------~gd~vl~~~~~~~s~~~~~~~~~-----~~~g~-----~v~~v~~~~--  192 (368)
                      +|+++|+..++..+.. ...           +|++|++.++.|++.........     ...+.     .+..++.+.  
T Consensus       126 ~~gseA~~~aik~a~~-~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  204 (449)
T 2cjg_A          126 EGGALAVENALKAAFD-WKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPG  204 (449)
T ss_dssp             SSHHHHHHHHHHHHHH-HHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTT
T ss_pred             CchHHHHHHHHHHHHH-HhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCch
Confidence            9999999999875410 011           28999999999997543221111     01122     566666543  


Q ss_pred             CC--------CCCHHHHHHhcc---cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCccc---
Q 017640          193 DE--------SPDLDKLKEMLS---RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV---  253 (368)
Q Consensus       193 ~~--------~~d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~~---  253 (368)
                      ..        ..++++|+++++   +++++|+++.++|++|.+.+    +++|.++|++||+++|+|++|+ ++...   
T Consensus       205 ~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~  284 (449)
T 2cjg_A          205 LDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAW  284 (449)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS
T ss_pred             hhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCcce
Confidence            11        235666888884   57899999988999997666    9999999999999999999998 43321   


Q ss_pred             -ccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 017640          254 -VDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGA  332 (368)
Q Consensus       254 -~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~  332 (368)
                       ++.....+|+++  ++|.+   .+|++++++++++.+.+...+...                .....+.|..+.+++.+
T Consensus       285 ~~~~~~~~~di~t--~sK~l---~iG~~~~~~~~~~~l~~~~~~~~~----------------~~~t~~~n~~~~~aa~a  343 (449)
T 2cjg_A          285 AYQQLDVAPDIVA--FGKKT---QVCGVMAGRRVDEVADNVFAVPSR----------------LNSTWGGNLTDMVRARR  343 (449)
T ss_dssp             THHHHTCCCSEEE--ECGGG---SSEEEEECGGGGGSTTCTTTSTTS----------------SCCSSSSCHHHHHHHHH
T ss_pred             eecccCCCceEEE--ecCcc---cEEEEEECHHHhhhhhhcccCCcc----------------cccCCCCCHHHHHHHHH
Confidence             111223577764  56977   379999999998876553211000                01122567788888888


Q ss_pred             HHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          333 AIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       333 al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +++.+.+   +.+.++..++.+++.+.|.++
T Consensus       344 al~~~~~---~~~~~~~~~~~~~l~~~L~~l  371 (449)
T 2cjg_A          344 ILEVIEA---EGLFERAVQHGKYLRARLDEL  371 (449)
T ss_dssp             HHHHHHH---HTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHh---ccHHHHHHHHHHHHHHHHHHH
Confidence            9988776   346678888888888888764

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.84  E-value=3e-20  Score=177.99  Aligned_cols=245  Identities=15%  Similarity=0.133  Sum_probs=168.5

Q ss_pred             CCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCC
Q 017640           77 SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKS  156 (368)
Q Consensus        77 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~  156 (368)
                      ++.++.+.+++.+.+....   +.+.      ..+...++++.++++++ .. ++|++++|+++|+..++.+.+  .+.+
T Consensus        71 G~~~~~v~~a~~~~~~~~~---~~~~------~~~~~~~l~~~la~~~~-~~-~~v~~~~sgseA~~~al~~ar--~~~~  137 (434)
T 2epj_A           71 GHKHPRVLEAVEEALARGW---LYGA------PGEAEVLLAEKILGYVK-RG-GMIRFVNSGTEATMTAIRLAR--GYTG  137 (434)
T ss_dssp             CBTCHHHHHHHHHHHHTCS---CCSS------CCHHHHHHHHHHHHHHC-TT-CEEEEESSHHHHHHHHHHHHH--HHHC
T ss_pred             CCCCHHHHHHHHHHHHhCC---CCCC------CCHHHHHHHHHHHHhCC-CC-CEEEEeCCHHHHHHHHHHHHH--HhhC
Confidence            4578999999999887521   1111      13455679999999985 33 489999999999999998721  0235


Q ss_pred             CCEEEEcCCCCcccHHHHHHHH----------HHcCC------EEEEEeCCCCCCCCHHHHHHhccc---CceEEEEccc
Q 017640          157 GDEVILTVAEHHSAIVPWQLVA----------QKTGA------NLKFLNLNDDESPDLDKLKEMLSR---KTKLVVIHHI  217 (368)
Q Consensus       157 gd~vl~~~~~~~s~~~~~~~~~----------~~~g~------~v~~v~~~~~~~~d~~~l~~~l~~---~~~~v~~~~~  217 (368)
                      ++.|++.++.|++........+          ...|+      ++..++..     |+++|++++++   ++++|+++..
T Consensus       138 ~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~ep~  212 (434)
T 2epj_A          138 RDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYN-----DVEALERVFAEYGDRIAGVIVEPV  212 (434)
T ss_dssp             CCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETT-----CHHHHHHHHHHHGGGEEEEEECSS
T ss_pred             CCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCC-----CHHHHHHHHHhCCCCEEEEEEeCC
Confidence            6788888898887433111000          00132      35566653     89999999873   6788888888


Q ss_pred             ccccccccC----HHHHHHHHHhcCCEEEEecCCcCCcc--c---ccCCCCCccEEEecCcCcCCCC-cceEEEEccccc
Q 017640          218 SNMLASILP----IEEIVHWSHDVGAKVLVDACQSVPHM--V---VDVQGLDADFLVASSHKMCGPT-GIGFLFGKSDLL  287 (368)
Q Consensus       218 ~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~~~~~--~---~~~~~~~~d~~~~s~~K~~g~~-G~G~l~~~~~li  287 (368)
                      +++||.+.|    +++|.++|++||+++|+|++|+ |..  .   .+.....+|++  |++|.+|+. .+|+++++++++
T Consensus       213 ~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~v~~~~~~~  289 (434)
T 2epj_A          213 IANAGVIPPRREFLAALQRLSRESGALLILDEVVT-GFRLGLEGAQGYFNIEGDII--VLGKIIGGGFPVGAVAGSREVM  289 (434)
T ss_dssp             BCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTT-TTTSSTTHHHHHHTCCCSEE--EEEGGGGTTSSCEEEEECHHHH
T ss_pred             cCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchh-ceeCCcchhhHHhCCCCCee--eecchhcCCcceeeeeecHHHH
Confidence            888999988    9999999999999999999998 221  1   11112347765  667987761 289999999988


Q ss_pred             ccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          288 SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       288 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +.+.+...  .                ......+.|..+.+++.++++.+.+   +.+.++.+++.+++.+.|.+.
T Consensus       290 ~~l~~~~~--~----------------~~~~t~~~~~~~~aa~~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~  344 (434)
T 2epj_A          290 SLLTPQGK--V----------------FNAGTFNAHPITMAAGLATLKALEE---EPVYSVSREAAKALEEAASEV  344 (434)
T ss_dssp             TTBTTTSS--B----------------CCCCTTTTCHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhccCCC--c----------------ccCCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHH
Confidence            77664210  0                0011124677778888888888776   345677777777777777654

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.84  E-value=2.1e-19  Score=172.85  Aligned_cols=270  Identities=9%  Similarity=0.005  Sum_probs=165.9

Q ss_pred             CeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHH
Q 017640           67 KLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE  140 (368)
Q Consensus        67 ~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~  140 (368)
                      +.-|+|..+      .|+.++.+.+++.+.+.........      ....+...+++++++++++...+ .|+||+|+++
T Consensus        43 g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~------~~~~~~~~~la~~l~~~~~~~~~-~v~~~~sGse  115 (448)
T 3dod_A           43 GKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLL------GMTNVPATQLAETLIDISPKKLT-RVFYSDSGAE  115 (448)
T ss_dssp             SCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCCCS------SSEEHHHHHHHHHHHHHSCTTEE-EEEEESSHHH
T ss_pred             CCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCcccc------ccCCHHHHHHHHHHHHhCCCCCC-EEEEeCchHH
Confidence            345777653      4566899999999988654211100      11134556889999999875543 9999999999


Q ss_pred             HHHHHHHHccCCCCCC----CCEEEEcCCCCcccHHHHHHHHHHc---------CCEEEEEeCCCCCCC-----------
Q 017640          141 AINLVAYSWGLSNLKS----GDEVILTVAEHHSAIVPWQLVAQKT---------GANLKFLNLNDDESP-----------  196 (368)
Q Consensus       141 a~~~~~~~~~~~~~~~----gd~vl~~~~~~~s~~~~~~~~~~~~---------g~~v~~v~~~~~~~~-----------  196 (368)
                      |+..++..+......+    +|+|++.++.|++............         ...+..++.+..+..           
T Consensus       116 A~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (448)
T 3dod_A          116 AMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQ  195 (448)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCCCCTTSSSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCccchhhhhHH
Confidence            9999998872100003    5999999999987553322221100         112344444332222           


Q ss_pred             CHHHHHHhcc---cCceEEEEcccc-cccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccE
Q 017640          197 DLDKLKEMLS---RKTKLVVIHHIS-NMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADF  263 (368)
Q Consensus       197 d~~~l~~~l~---~~~~~v~~~~~~-n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~  263 (368)
                      |+++|+++++   +++++|+++.++ |++|.+.+    +++|.++|++||+++|+||+|+ ++..    ..+.....+|+
T Consensus       196 d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di  275 (448)
T 3dod_A          196 CLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDL  275 (448)
T ss_dssp             HHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSE
T ss_pred             HHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCCCCCE
Confidence            4788999886   467888888888 99998877    9999999999999999999988 4321    12222335676


Q ss_pred             EEecCcCcCCCC--cceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC
Q 017640          264 LVASSHKMCGPT--GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG  341 (368)
Q Consensus       264 ~~~s~~K~~g~~--G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g  341 (368)
                      ++  ++|.+++.  .+|++++++++++.+.+........              ......+.+..+.+++.++++.+++. 
T Consensus       276 ~t--~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~--------------~~~~t~~~~~~~~aaa~aal~~~~~~-  338 (448)
T 3dod_A          276 MA--AGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTF--------------FHGHSYTGNQLGCAVALENLALFESE-  338 (448)
T ss_dssp             EE--ECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCC--------------CCCCTTTTCHHHHHHHHHHHHHHHHT-
T ss_pred             EE--ecccccCCcCceEEEEECHHHHHHhhhccccCCcc--------------cccCCCCcCHHHHHHHHHHHHHHhcc-
Confidence            65  55976542  4799999999988877521000000              00112255677777888888877653 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh
Q 017640          342 MQKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       342 ~~~i~~~~~~l~~~l~~~l~~  362 (368)
                        .+.++.+++.+++.+.|.+
T Consensus       339 --~~~~~~~~~~~~~~~~l~~  357 (448)
T 3dod_A          339 --NIVEQVAEKSKKLHFLLQD  357 (448)
T ss_dssp             --THHHHHHHHHHHHHHHHHH
T ss_pred             --cHHHHHHHHHHHHHHHHHH
Confidence              3455555666666665554

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.84  E-value=8.4e-19  Score=168.85  Aligned_cols=267  Identities=8%  Similarity=0.016  Sum_probs=173.8

Q ss_pred             CeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHH
Q 017640           67 KLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE  140 (368)
Q Consensus        67 ~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~  140 (368)
                      +.-|+|..+      .|+.++.+.+++.+.+......+.       ....+...++++++++.++.+.  +|+||+|+++
T Consensus        48 g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~-------~~~~~~~~~la~~l~~~~~~~~--~v~~~~ggse  118 (452)
T 3n5m_A           48 GKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSYFPM-------SQSHEPAIKLAEKLNEWLGGEY--VIFFSNSGSE  118 (452)
T ss_dssp             CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCCCCT-------TSEEHHHHHHHHHHHHHHTSCE--EEEEESSHHH
T ss_pred             CCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCCccc-------ccCCHHHHHHHHHHHHhCCCCc--eEEEeCchHH
Confidence            334666643      346689999999998865321111       1123556689999999998754  3999999999


Q ss_pred             HHHHHHHHccCC-CCC---CCCEEEEcCCCCcccHHHHHHHHHH---------cCCEEEEEeCCCCCCC---C-------
Q 017640          141 AINLVAYSWGLS-NLK---SGDEVILTVAEHHSAIVPWQLVAQK---------TGANLKFLNLNDDESP---D-------  197 (368)
Q Consensus       141 a~~~~~~~~~~~-~~~---~gd~vl~~~~~~~s~~~~~~~~~~~---------~g~~v~~v~~~~~~~~---d-------  197 (368)
                      |+..++..+... ..+   +++.|++.++.|++...........         ....+..++.......   |       
T Consensus       119 A~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (452)
T 3n5m_A          119 ANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDV  198 (452)
T ss_dssp             HHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGC
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHH
Confidence            999999987210 003   7889999999999865332221100         0112444543211111   2       


Q ss_pred             --HHHHHHhcc----cCceEEEEccc-ccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCc
Q 017640          198 --LDKLKEMLS----RKTKLVVIHHI-SNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDA  261 (368)
Q Consensus       198 --~~~l~~~l~----~~~~~v~~~~~-~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~  261 (368)
                        +++|+++++    +++++|+++.+ +| ||.+.|    +++|.++|++||+++|+||+|. ++..    ..+.....+
T Consensus       199 ~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~  277 (452)
T 3n5m_A          199 ECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKP  277 (452)
T ss_dssp             HHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCC
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCCCC
Confidence              889999987    56788999998 89 999887    9999999999999999999987 4322    122233457


Q ss_pred             cEEEecCcCcCCC--CcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 017640          262 DFLVASSHKMCGP--TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST  339 (368)
Q Consensus       262 d~~~~s~~K~~g~--~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~  339 (368)
                      |+++  ++|.+++  .++|++++++++++.+.+.......               ......+.+..+.+++.++++.+.+
T Consensus       278 di~t--~sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~---------------~~~~t~~~~~~~~aaa~aal~~~~~  340 (452)
T 3n5m_A          278 DIIT--MAKGITSAYLPLSATAVKREIYEAFKGKGEYEFF---------------RHINTFGGNPAACALALKNLEIIEN  340 (452)
T ss_dssp             SEEE--ECGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSC---------------CCCCSSTTCHHHHHHHHHHHHHHHH
T ss_pred             CEEe--ecccccCCCcceEEEEECHHHHHHHhhccCCCCc---------------cccCCCCCCHHHHHHHHHHHHHHHh
Confidence            7775  5696654  3489999999998877531000000               0001124567777777788887765


Q ss_pred             hCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          340 IGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       340 ~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      .   .+.++.+++.+++.+.|.++
T Consensus       341 ~---~~~~~~~~~~~~l~~~L~~~  361 (452)
T 3n5m_A          341 E---NLIERSAQMGSLLLEQLKEE  361 (452)
T ss_dssp             T---THHHHHHHHHHHHHHHHHHH
T ss_pred             c---cHHHHHHHHHHHHHHHHHHH
Confidence            3   34566666666666666554

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.84  E-value=3.5e-20  Score=178.64  Aligned_cols=262  Identities=10%  Similarity=0.028  Sum_probs=179.3

Q ss_pred             EEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHH
Q 017640           69 VYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI  142 (368)
Q Consensus        69 i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~  142 (368)
                      -|+|..+      .|..++.+.+++.+.+.........      ....+...+++++++++++.+.+ +|+|++|+++|+
T Consensus        76 ~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~------~~~~~~~~~L~e~la~~~~~~~~-~v~~~~sGseA~  148 (457)
T 3tfu_A           76 EVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFG------GLTHEPAARLAKLLVDITPAGLD-TVFFSDSGSVSV  148 (457)
T ss_dssp             EEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCSS------SEECHHHHHHHHHHHHHSSTTEE-EEEEESSHHHHH
T ss_pred             EEEECCCcHhhhccCCCCHHHHHHHHHHHHhccCcccc------ccCCHHHHHHHHHHHHhCCCCcC-EEEEeCcHHHHH
Confidence            5777653      4567999999999998875322100      11134556899999999986654 999999999999


Q ss_pred             HHHHHHccCC---CC-CCCCEEEEcCCCCcccHHHHHHHH----------HHcCCEEEEEeCCCC--CCCCHHHHHHhcc
Q 017640          143 NLVAYSWGLS---NL-KSGDEVILTVAEHHSAIVPWQLVA----------QKTGANLKFLNLNDD--ESPDLDKLKEMLS  206 (368)
Q Consensus       143 ~~~~~~~~~~---~~-~~gd~vl~~~~~~~s~~~~~~~~~----------~~~g~~v~~v~~~~~--~~~d~~~l~~~l~  206 (368)
                      ..++..+...   .- ..++.|++.++.|++.......+.          ......+..++...+  ...|+++|+++++
T Consensus       149 ~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~  228 (457)
T 3tfu_A          149 EVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLA  228 (457)
T ss_dssp             HHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHH
Confidence            9999876210   00 234589999999987543322220          111123334443322  2247899999997


Q ss_pred             ---cCceEEEEcc-cccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEEecCcCcCC
Q 017640          207 ---RKTKLVVIHH-ISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCG  273 (368)
Q Consensus       207 ---~~~~~v~~~~-~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~g  273 (368)
                         +++++|+++. ++|++|.+.|    +++|.++|++||+++|+||+|. +|..    ..+.....+|++  +++|.++
T Consensus       229 ~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~~~~pdii--t~sK~l~  306 (457)
T 3tfu_A          229 QHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIM--CVGKALT  306 (457)
T ss_dssp             HHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGG
T ss_pred             hCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchhHhHhcCCCceEE--EEChhhh
Confidence               6789999999 9999999987    9999999999999999999987 4322    112223357877  5669665


Q ss_pred             C--CcceEEEEcccccccCC---Cc--ccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHH
Q 017640          274 P--TGIGFLFGKSDLLSAMP---PF--LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIH  346 (368)
Q Consensus       274 ~--~G~G~l~~~~~li~~l~---~~--~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~  346 (368)
                      +  ..+|++++++++++.+.   +.  ..+.                     ..+.|..+.+++.++++.+.+.   .+.
T Consensus       307 gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~---------------------t~~~n~~a~aaa~aaL~~~~~~---~~~  362 (457)
T 3tfu_A          307 GGYLSLAATLCTADVAHTISAGAAGALMHGP---------------------TFMANPLACAVSVASVELLLGQ---DWR  362 (457)
T ss_dssp             TTSSCCEEEEEEHHHHHHHHHSSSCSCCCCC---------------------TTTTCHHHHHHHHHHHHHHHTS---CHH
T ss_pred             CCCcceEEEEEcHHHHHHhhccCCCceeEec---------------------CCCcCHHHHHHHHHHHHHHhhh---HHH
Confidence            5  24899999999887663   11  1111                     1256777777888888877653   456


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 017640          347 AYEVKWIICSIIVIQER  363 (368)
Q Consensus       347 ~~~~~l~~~l~~~l~~~  363 (368)
                      ++..++.+++.+.|.++
T Consensus       363 ~~~~~~~~~l~~~L~~l  379 (457)
T 3tfu_A          363 TRITELAAGLTAGLDTA  379 (457)
T ss_dssp             HHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            77788888888888765

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.84  E-value=3e-19  Score=172.42  Aligned_cols=267  Identities=11%  Similarity=0.003  Sum_probs=173.9

Q ss_pred             CeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHH
Q 017640           67 KLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE  140 (368)
Q Consensus        67 ~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~  140 (368)
                      +.-|+|..+      .|+.++.+.+++.+.+........     ......+...+++++++++++.+.+ +|+||+|+++
T Consensus        50 G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~-----~~~~~~~~~~~la~~l~~~~~~~~~-~v~~~~gGse  123 (460)
T 3gju_A           50 GRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHA-----YVGHGTEASITLAKMIIDRAPKGMS-RVYFGLSGSD  123 (460)
T ss_dssp             CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCCC-----CTTCCCHHHHHHHHHHHHHSCTTEE-EEEEESSHHH
T ss_pred             CCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcccccc-----ccccCCHHHHHHHHHHHhhCCCCcC-EEEEeCchHH
Confidence            334677643      446689999999998887531110     0011134556899999999876654 9999999999


Q ss_pred             HHHHHHHHccCC----CCCCCCEEEEcCCCCcccHHHHHHHHH---------HcCCEEEEEeCCC-----CCCCC-----
Q 017640          141 AINLVAYSWGLS----NLKSGDEVILTVAEHHSAIVPWQLVAQ---------KTGANLKFLNLND-----DESPD-----  197 (368)
Q Consensus       141 a~~~~~~~~~~~----~~~~gd~vl~~~~~~~s~~~~~~~~~~---------~~g~~v~~v~~~~-----~~~~d-----  197 (368)
                      |+..+++.+...    .-.+++.|++.++.|++.......+..         .....+..++...     +...+     
T Consensus       124 A~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~  203 (460)
T 3gju_A          124 ANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFS  203 (460)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHH
Confidence            999999887210    003578999999999986644333210         0112345555432     11123     


Q ss_pred             ---HHHHHHhcc----cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCccc----ccCCCCCc
Q 017640          198 ---LDKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLDA  261 (368)
Q Consensus       198 ---~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~~----~~~~~~~~  261 (368)
                         +++|+++++    +++++|+++.++|++|.+.+    +++|.++|++||+++|+||+|+ +|...    .+.....+
T Consensus       204 ~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~p  283 (460)
T 3gju_A          204 QHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKP  283 (460)
T ss_dssp             HHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCC
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCC
Confidence               688888886    46789999999999998776    9999999999999999999998 44321    12223357


Q ss_pred             cEEEecCcCcCCCC--cceEEEEcccccccCC-------CcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 017640          262 DFLVASSHKMCGPT--GIGFLFGKSDLLSAMP-------PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGA  332 (368)
Q Consensus       262 d~~~~s~~K~~g~~--G~G~l~~~~~li~~l~-------~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~  332 (368)
                      |+++  ++|.+++.  .+|++++++++++.+.       +...+.                     ..+.+..+.+++.+
T Consensus       284 di~t--~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~---------------------t~~~~~~~~aaa~a  340 (460)
T 3gju_A          284 DLIT--IAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGW---------------------TYSAHPICVAAGVA  340 (460)
T ss_dssp             SEEE--ECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCC---------------------TTTTCHHHHHHHHH
T ss_pred             Ceee--eehhhcCCCCCeEEEEECHHHHHHHhcccccccccccCC---------------------CCCCCHHHHHHHHH
Confidence            7765  45977653  4899999999887763       222211                     12567777788888


Q ss_pred             HHHHHHHhC-HHHHHHHHHHHHHHHHHHHHh
Q 017640          333 AIDYLSTIG-MQKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       333 al~~~~~~g-~~~i~~~~~~l~~~l~~~l~~  362 (368)
                      +++.+++.. .+.+++....+.+.+.+.+.+
T Consensus       341 al~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  371 (460)
T 3gju_A          341 NLELIDEMDLVTNAGETGAYFRAELAKAVGG  371 (460)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHhc
Confidence            888776643 234444444444444444433

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.84  E-value=5.4e-21  Score=178.23  Aligned_cols=169  Identities=15%  Similarity=0.159  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCC--EEEEcCCCCcccHHHHHHHHHHcCCEEEEE
Q 017640          111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD--EVILTVAEHHSAIVPWQLVAQKTGANLKFL  188 (368)
Q Consensus       111 ~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd--~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v  188 (368)
                      +...++++++++++|.+   ..++++|+++++..++.++    ..+||  .|++..+.|++.+.. ...+...|++++.+
T Consensus        47 ~~~~~l~~~la~~~~~~---~~i~~~~G~~a~~~al~~~----~~~gd~~~vi~~~~~~~~~~~~-~~~~~~~g~~~~~v  118 (357)
T 3lws_A           47 AIIEPFEQKFADVLGMD---DAVFFPSGTMAQQVALRIW----SDETDNRTVAYHPLCHLEIHEQ-DGLKELHPIETILV  118 (357)
T ss_dssp             TTHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHH----HHHHTCCEEEECTTCHHHHSST-THHHHHSSCEEEEC
T ss_pred             hHHHHHHHHHHHHhCCC---cEEEecCcHHHHHHHHHHH----hhcCCCcEEEecccceeeeecc-chhhhccCcEEEEe
Confidence            34568999999999985   3466688889999999887    67787  777777766554321 11234558899888


Q ss_pred             eCCCCCCCCHHHHHHhcccCceEEEEccccccc-ccccC---HHHHHHHHHhcCCEEEEecCCcC------CcccccCCC
Q 017640          189 NLNDDESPDLDKLKEMLSRKTKLVVIHHISNML-ASILP---IEEIVHWSHDVGAKVLVDACQSV------PHMVVDVQG  258 (368)
Q Consensus       189 ~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~t-G~~~~---l~~i~~l~~~~g~~li~D~a~~~------~~~~~~~~~  258 (368)
                      +. +++.+|+++|+++.  ++++|++++++||| |.++|   +++|.++|++||+++|+|++|..      +....++. 
T Consensus       119 ~~-~~~~~d~~~l~~~~--~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~-  194 (357)
T 3lws_A          119 GA-ADRLMTLDEIKALP--DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA-  194 (357)
T ss_dssp             SC-TTSCCCHHHHHTCC--SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH-
T ss_pred             cC-CCCCcCHHHHhcCc--CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH-
Confidence            84 56788999999884  38999999999998 99887   88999999999999999999862      11111111 


Q ss_pred             CCccEEEecCcCcC-CCCcceEEEEcccccccCCC
Q 017640          259 LDADFLVASSHKMC-GPTGIGFLFGKSDLLSAMPP  292 (368)
Q Consensus       259 ~~~d~~~~s~~K~~-g~~G~G~l~~~~~li~~l~~  292 (368)
                      ...|.++.|+||.+ |+.| |+++.++++++.+..
T Consensus       195 ~~~d~~~~s~sK~~~~~~g-g~~~~~~~~~~~~~~  228 (357)
T 3lws_A          195 GLFDSIYISFYKGLGGIAG-AILAGPAAFCQTARI  228 (357)
T ss_dssp             TTSSEEEEESSSTTCCSSC-EEEEECHHHHHHHHH
T ss_pred             hcCCEEEEeccccCCCCce-EEEEcCHHHHHHHHH
Confidence            24788899999988 6766 999999988877653

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.83  E-value=3.9e-21  Score=183.82  Aligned_cols=258  Identities=10%  Similarity=0.029  Sum_probs=172.7

Q ss_pred             CCeEEeccCCCCC-CcHHHHHHHHHHHHHhhccCCCCcchhhH-HHHHHHHHHHHHHHHHcC------CCCCCcEEEeCC
Q 017640           66 KKLVYLDNAATSQ-KPIAVLKALQNYYEAYNSNVHRGIHFLSA-KATDEYELARKKVAAFIN------ASDSGEIVFTKN  137 (368)
Q Consensus        66 ~~~i~l~~~~~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~~la~~~~------~~~~~~v~~t~g  137 (368)
                      +..+.|+.+.+.. .++.+.+++.+.+...  ..+...+.... + .....++|++++++++      .++ ++|++|+|
T Consensus        56 ~~~i~l~~g~~~~~~~~~v~~a~~~~l~~~--~~~~~~Y~~~~~G-~~~~~~lr~aia~~~~~~~~~~~~~-~~iv~t~G  131 (427)
T 2hox_A           56 GCSADVASGDGLFLEEYWKQHKEASAVLVS--PWHRMSYFFNPVS-NFISFELEKTIKELHEVVGNAAAKD-RYIVFGVG  131 (427)
T ss_dssp             TCCEECCSCCCGGGHHHHTTSHHHHCEEEC--TTTTCSSSCSSCC-TTCCHHHHHHHHHHHHHHTCBCCTT-CEEEEESH
T ss_pred             CceEEecCcCCCCCCCHHHHHhHHhhhhcC--CcccccCCCCCCC-ccchHHHHHHHHHHHHHhCCcCCCC-CEEEEeCC
Confidence            5678888887763 3456666666554211  00000011100 1 0113478888888886      333 49999999


Q ss_pred             HHHHHHHHHHHccCCC----CCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEE
Q 017640          138 ATEAINLVAYSWGLSN----LKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVV  213 (368)
Q Consensus       138 ~t~a~~~~~~~~~~~~----~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~  213 (368)
                      +++++.+++.++....    +++||.|++++|.|++    +...++..|++++.+.      +|++.|++++++++++|+
T Consensus       132 ~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~----~~~~~~~~g~~~~~~~------~d~~~l~~~~~~~~k~v~  201 (427)
T 2hox_A          132 VTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPV----FREQTKYFDKKGYVWA------GNAANYVNVSNPEQYIEM  201 (427)
T ss_dssp             HHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHH----HHHHHHHSCBTTEEEE------EEGGGGTTCSCGGGEEEE
T ss_pred             HHHHHHHHHHHHhhccccccCCCCCEEEEeCCCccc----HHHHHHHcCCeeeeec------CCHHHHHHhhcCCceEEE
Confidence            9999999999882101    6799999999998876    4455566688776544      478899998888899999


Q ss_pred             EcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCccc-ccCCCCCccEEEecCcCcCCCCc--ceEEEEc-cccccc
Q 017640          214 IHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMV-VDVQGLDADFLVASSHKMCGPTG--IGFLFGK-SDLLSA  289 (368)
Q Consensus       214 ~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~-~~~~~~~~d~~~~s~~K~~g~~G--~G~l~~~-~~li~~  289 (368)
                      +++++||||.+++ + +   ++  ++..+.|+++..+..+ .++. .+.+++++|+||.+|++|  +||++++ +++++.
T Consensus       202 l~~p~NPtG~~~~-~-~---l~--~~~~i~d~~~~~~~~s~~~~~-~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~l~~~  273 (427)
T 2hox_A          202 VTSPNNPEGLLRH-A-V---IK--GCKSIYDMVYYWPHYTPIKYK-ADEDILLFTMSKFTGHSGSRFGWALIKDESVYNN  273 (427)
T ss_dssp             EESSCTTTCCCCC-C-S---ST--TCEEEEECTTCSTTTSCCCSC-BCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHH
T ss_pred             EcCCCCCcccccH-H-H---Hc--CCCEEEeecccCCCCCccccC-CCceEEEEeChhcCCCCCceEEEEEECCHHHHHH
Confidence            9999999999999 4 3   33  5678899887532222 2232 468999999999999888  9999994 788777


Q ss_pred             CCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH----------hCHHHHHHHHHHHHHHHHHH
Q 017640          290 MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST----------IGMQKIHAYEVKWIICSIIV  359 (368)
Q Consensus       290 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~----------~g~~~i~~~~~~l~~~l~~~  359 (368)
                      +......+                     ..+.+.....++..+++...+          .-++.++++.++..+++.+.
T Consensus       274 l~~~~~~~---------------------~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~  332 (427)
T 2hox_A          274 LLNYMTKN---------------------TEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITAL  332 (427)
T ss_dssp             HHHHHHHH---------------------TSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhc---------------------CCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            66443211                     113445555555555553221          11345677788888889999


Q ss_pred             HHhhcCC
Q 017640          360 IQERHNT  366 (368)
Q Consensus       360 l~~~~g~  366 (368)
                      |++.+|+
T Consensus       333 L~~~~g~  339 (427)
T 2hox_A          333 LDQSDRF  339 (427)
T ss_dssp             HTTSSSE
T ss_pred             HHhCcCc
Confidence            9876553

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.83  E-value=1.2e-18  Score=167.76  Aligned_cols=262  Identities=12%  Similarity=0.131  Sum_probs=171.2

Q ss_pred             CeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHH
Q 017640           67 KLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE  140 (368)
Q Consensus        67 ~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~  140 (368)
                      +.-|+|..+      .|+.++.+.+++.+++........      .....+...+++++++++++....++|+||+|+++
T Consensus        63 G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~------~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGse  136 (453)
T 4ffc_A           63 GNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTCF------MVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAE  136 (453)
T ss_dssp             SCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCTT------TTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHH
T ss_pred             CCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhcccccc------CcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHH
Confidence            345777653      446799999999999876522111      11124555689999999998653358999999999


Q ss_pred             HHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHH----------cCCEEEEEeCCCC----CCCC--------H
Q 017640          141 AINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK----------TGANLKFLNLNDD----ESPD--------L  198 (368)
Q Consensus       141 a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~----------~g~~v~~v~~~~~----~~~d--------~  198 (368)
                      |+..+++.+..  ...++.|++.++.||+.......+...          ....+..++....    +..+        +
T Consensus       137 A~~~alk~a~~--~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  214 (453)
T 4ffc_A          137 AVENAIKVARL--ATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAI  214 (453)
T ss_dssp             HHHHHHHHHHH--HHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHH--hcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHH
Confidence            99999986521  135689999999999876544333110          0114556665411    1112        4


Q ss_pred             HHHHHhccc-CceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEEecC
Q 017640          199 DKLKEMLSR-KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASS  268 (368)
Q Consensus       199 ~~l~~~l~~-~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s~  268 (368)
                      +.|++.+.+ ++++|+++..++..|.+.+    +++|.++|++||+++|+|++|. ++..    ..+.....+|+++  +
T Consensus       215 ~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t--~  292 (453)
T 4ffc_A          215 SRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVT--M  292 (453)
T ss_dssp             HHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEE--E
T ss_pred             HHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcchHh--h
Confidence            667777654 4566666666666677766    9999999999999999999987 4322    1111223467665  5


Q ss_pred             cCcCCC-CcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Q 017640          269 HKMCGP-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHA  347 (368)
Q Consensus       269 ~K~~g~-~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~  347 (368)
                      +|.+++ -.+|++++++++++.+.+...+.+                     .+.+..+.+++.++++.+.+.   .+.+
T Consensus       293 sK~~~~G~~~G~~~~~~~i~~~~~~~~~~~t---------------------~~~~~~~~aaa~aal~~~~~~---~~~~  348 (453)
T 4ffc_A          293 AKGIAGGMPLSAVTGRAELMDAVYAGGLGGT---------------------YGGNPVTCAAAVAALGVMREL---DLPA  348 (453)
T ss_dssp             CGGGGTTSSCEEEEEEHHHHTTSCTTSSCCS---------------------SSSCHHHHHHHHHHHHHHHHT---THHH
T ss_pred             hhhhcCCcCeEEEEECHHHHhhhcccCcCCC---------------------CCcCHHHHHHHHHHHHHhhhh---hHHH
Confidence            697765 228999999999888775543222                     145677777788888877653   3445


Q ss_pred             HHHHHHHHHHHHHHh
Q 017640          348 YEVKWIICSIIVIQE  362 (368)
Q Consensus       348 ~~~~l~~~l~~~l~~  362 (368)
                      +.+++.+++.+.|.+
T Consensus       349 ~~~~~~~~l~~~l~~  363 (453)
T 4ffc_A          349 RARAIEASVTSRLSA  363 (453)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555555555555544

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.83  E-value=4.5e-19  Score=170.72  Aligned_cols=263  Identities=11%  Similarity=0.092  Sum_probs=171.8

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..+      .|+.++.+.+++.+.+......   +   ......+...+++++++++++....++|+||+|++
T Consensus        59 ~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~---~---~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGs  132 (451)
T 3oks_A           59 DGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHT---C---FMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGS  132 (451)
T ss_dssp             TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCSCC---T---TTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHH
T ss_pred             CCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhcccc---c---CCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHH
Confidence            3445777653      4467999999999988654211   1   01112345568999999999755334899999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHH----------cCCEEEEEeCCCCC------C-------C
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK----------TGANLKFLNLNDDE------S-------P  196 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~----------~g~~v~~v~~~~~~------~-------~  196 (368)
                      +|+..+++.+..  ...++.|++.++.||+.......+...          ....+..++....+      .       .
T Consensus       133 eA~~~Alk~a~~--~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  210 (451)
T 3oks_A          133 EAVENAVKIARS--HTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGEL  210 (451)
T ss_dssp             HHHHHHHHHHHH--HHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHH
T ss_pred             HHHHHHHHHHHH--hcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHH
Confidence            999999987621  135689999999999876544332110          01145666654110      0       1


Q ss_pred             CHHHHHHhcc-----cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCcc
Q 017640          197 DLDKLKEMLS-----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDAD  262 (368)
Q Consensus       197 d~~~l~~~l~-----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d  262 (368)
                      +++.+++.+.     .++++|+++..++..|.+.+    +++|.++|++||+++|+|++|. ++..    ..+.....+|
T Consensus       211 ~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pd  290 (451)
T 3oks_A          211 AAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPD  290 (451)
T ss_dssp             HHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCS
T ss_pred             HHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCC
Confidence            2444444443     34677788887777788777    9999999999999999999997 3321    1222233567


Q ss_pred             EEEecCcCcCCC-CcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC
Q 017640          263 FLVASSHKMCGP-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG  341 (368)
Q Consensus       263 ~~~~s~~K~~g~-~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g  341 (368)
                      ++  +++|.+|+ -.+|++++++++++.+.+...+.+.                     +.+..+.++..++++.+.+. 
T Consensus       291 i~--t~sK~l~~G~~iG~v~~~~~~~~~~~~~~~~~t~---------------------~~~~~~~aaa~aal~~~~~~-  346 (451)
T 3oks_A          291 LI--VTAKGIAGGLPLSAVTGRAEIMDSPHVSGLGGTY---------------------GGNPIACAAALATIETIESE-  346 (451)
T ss_dssp             EE--EECGGGGTTSSCEEEEEEHHHHTCSCTTSBCCSS---------------------SSCHHHHHHHHHHHHHHHHT-
T ss_pred             ee--eehhhhhCCcceEEEEECHHHHhhhcCCCcCCCC---------------------CCCHHHHHHHHHHHHHHhhh-
Confidence            76  55697765 2289999999998887755432221                     56777777788888877653 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh
Q 017640          342 MQKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       342 ~~~i~~~~~~l~~~l~~~l~~  362 (368)
                        .+.++.+++.+++.+.|.+
T Consensus       347 --~~~~~~~~~~~~l~~~L~~  365 (451)
T 3oks_A          347 --GLVARAQQIEKIMKDRLGR  365 (451)
T ss_dssp             --THHHHHHHHHHHHHHHHHH
T ss_pred             --hHHHHHHHHHHHHHHHHHH
Confidence              4455555666666665554

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.83  E-value=7.6e-19  Score=169.95  Aligned_cols=264  Identities=11%  Similarity=-0.011  Sum_probs=178.6

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHHHHHhhc-cCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCH
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNS-NVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNA  138 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~  138 (368)
                      ++.-|+|..+      .|+.++.+.+++.+.+..... +...+      ...+...++++.++++++.+.+ .|+|++|+
T Consensus        53 ~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~------~~~~~~~~lae~l~~~~~~~~~-~v~~~~sG  125 (472)
T 3hmu_A           53 EGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFK------TTHVPAIALAQKLAELAPGDLN-HVFFAGGG  125 (472)
T ss_dssp             TCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCSSSS------EECHHHHHHHHHHHHHSCTTEE-EEEEESSH
T ss_pred             CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccccccccc------cCCHHHHHHHHHHHHhCCCCCC-EEEEeCCH
Confidence            3445777653      456799999999999887531 11100      1134556799999999876544 89999999


Q ss_pred             HHHHHHHHHHccCC----CCCCCCEEEEcCCCCcccHHHHHHHHHH--------cCCEEEEEeCCC-----CCCCC----
Q 017640          139 TEAINLVAYSWGLS----NLKSGDEVILTVAEHHSAIVPWQLVAQK--------TGANLKFLNLND-----DESPD----  197 (368)
Q Consensus       139 t~a~~~~~~~~~~~----~~~~gd~vl~~~~~~~s~~~~~~~~~~~--------~g~~v~~v~~~~-----~~~~d----  197 (368)
                      ++|+..+++.+...    .-.+++.|++.++.|++.......+...        ....+..++...     ++ .|    
T Consensus       126 seA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~  204 (472)
T 3hmu_A          126 SEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEF  204 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHH
Confidence            99999999987210    0025679999999999865433222100        011344555332     11 23    


Q ss_pred             ----HHHHHHhcc----cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCccc----ccCCCCC
Q 017640          198 ----LDKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLD  260 (368)
Q Consensus       198 ----~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~~----~~~~~~~  260 (368)
                          +++|++.++    +++++|+++.+++++|.+.|    +++|.++|++||+++|+||+|. +|...    .+.....
T Consensus       205 ~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~  284 (472)
T 3hmu_A          205 GLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIR  284 (472)
T ss_dssp             HHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCC
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCCC
Confidence                788888886    46789999999999999887    9999999999999999999997 43321    1222335


Q ss_pred             ccEEEecCcCcCCCC--cceEEEEcccccccCCCc--ccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 017640          261 ADFLVASSHKMCGPT--GIGFLFGKSDLLSAMPPF--LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY  336 (368)
Q Consensus       261 ~d~~~~s~~K~~g~~--G~G~l~~~~~li~~l~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~  336 (368)
                      +|++++  +|.+|..  .+|++++++++++.+.+.  ..+.                     ..+.|..+.+++.++++.
T Consensus       285 pdi~t~--sK~l~gg~~plG~v~~~~~i~~~~~~~~~~~~~---------------------t~~~np~a~aAa~aaL~~  341 (472)
T 3hmu_A          285 PHIMTI--AKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGY---------------------TYSGHPVAAAVALENLRI  341 (472)
T ss_dssp             CSEEEE--CGGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCC---------------------TTTTCHHHHHHHHHHHHH
T ss_pred             Cceeee--chhhhcCCcceEEEEECHHHHHhcccCCccccC---------------------CCCCCHHHHHHHHHHHHH
Confidence            788765  4977654  389999999998877321  1111                     124567777778888887


Q ss_pred             HHHhCHHHHHHHHH-HHHHHHHHHHHhh
Q 017640          337 LSTIGMQKIHAYEV-KWIICSIIVIQER  363 (368)
Q Consensus       337 ~~~~g~~~i~~~~~-~l~~~l~~~l~~~  363 (368)
                      +++.   .+.++.+ ++.+++.+.|+++
T Consensus       342 ~~~~---~~~~~~~~~~~~~l~~~L~~l  366 (472)
T 3hmu_A          342 LEEE---NILDHVRNVAAPYLKEKWEAL  366 (472)
T ss_dssp             HHHT---THHHHHHHTHHHHHHHHHHGG
T ss_pred             HHHh---HHHHHHHHHHHHHHHHHHHHH
Confidence            7653   4566666 7777777777654

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.83  E-value=1.5e-19  Score=172.62  Aligned_cols=245  Identities=14%  Similarity=0.095  Sum_probs=168.1

Q ss_pred             CCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCC
Q 017640           77 SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKS  156 (368)
Q Consensus        77 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~  156 (368)
                      ++.++.+.+++.+.+....   +.+.      ..+...++++.++++++ .. ++|++++|+++|+..+++...  .+.+
T Consensus        67 G~~~p~v~~a~~~~~~~~~---~~~~------~~~~~~~l~~~l~~~~~-~~-~~v~~~~~g~ea~~~al~~ar--~~~~  133 (424)
T 2e7u_A           67 GHAHPKVLARVRETLERGL---TFGA------PSPLEVALAKKVKRAYP-FV-DLVRFVNSGTEATMSALRLAR--GYTG  133 (424)
T ss_dssp             CBTCHHHHHHHHHHHHTCS---CCSS------CCHHHHHHHHHHHHHCT-TC-CEEEEESSHHHHHHHHHHHHH--HHHC
T ss_pred             CCCCHHHHHHHHHHHHhCC---CCCC------CCHHHHHHHHHHHHhCC-CC-CEEEEeCCHHHHHHHHHHHHH--HhhC
Confidence            4578999999999887521   1111      13455688999999986 33 499999999999999998610  0234


Q ss_pred             CCEEEEcCCCCcccHHHHHHHHH----------HcC------CEEEEEeCCCCCCCCHHHHHHhcc---cCceEEEEccc
Q 017640          157 GDEVILTVAEHHSAIVPWQLVAQ----------KTG------ANLKFLNLNDDESPDLDKLKEMLS---RKTKLVVIHHI  217 (368)
Q Consensus       157 gd~vl~~~~~~~s~~~~~~~~~~----------~~g------~~v~~v~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~  217 (368)
                      ++.|++.++.|++........+.          ..|      .++..++..     |+++|+++++   +++++|+++..
T Consensus       134 ~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~ep~  208 (424)
T 2e7u_A          134 RPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYN-----DPEGLREVLKRRGEEIAAIIFEPV  208 (424)
T ss_dssp             CCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECTT-----CHHHHHHHHHHHGGGEEEEEECSS
T ss_pred             CCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCCC-----CHHHHHHHHHhCCCCEEEEEEeCC
Confidence            57888999999874432111000          012      235555543     8999999886   45677777766


Q ss_pred             ccccccccC----HHHHHHHHHhcCCEEEEecCCcCCcc-----cccCCCCCccEEEecCcCcCCCC-cceEEEEccccc
Q 017640          218 SNMLASILP----IEEIVHWSHDVGAKVLVDACQSVPHM-----VVDVQGLDADFLVASSHKMCGPT-GIGFLFGKSDLL  287 (368)
Q Consensus       218 ~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~~~~~-----~~~~~~~~~d~~~~s~~K~~g~~-G~G~l~~~~~li  287 (368)
                      +++||.+.|    +++|.++ ++||+++|+|++|+ +..     ..+.....+|++  |++|.+|+. .+|+++++++++
T Consensus       209 ~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~-g~~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~~~~~~~~~  284 (424)
T 2e7u_A          209 VGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMT-GFRLAFGGATELLGLKPDLV--TLGKILGGGLPAAAYAGRREIM  284 (424)
T ss_dssp             BCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTT-TTTSSTTHHHHHHTCCCSEE--EECGGGGTTSSCEEEEECHHHH
T ss_pred             CCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcc-ccccchhHHHHHhCCCcchh--hhhhhhhCCcceEEEEEcHHHH
Confidence            666999887    9999999 99999999999998 221     111112346765  777988751 289999999988


Q ss_pred             ccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          288 SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       288 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +.+.+...  .                ......+.|..+.+++.++++.+.+  .+.+.++..++.+++.+.|.++
T Consensus       285 ~~~~~~~~--~----------------~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~l~~~L~~~  340 (424)
T 2e7u_A          285 EKVAPLGP--V----------------YQAGTLSGNPLAMAAGLATLELLEE--NPGYYAYLEDLGARLEAGLKEV  340 (424)
T ss_dssp             TTBTTTSS--B----------------CCCCTTCSCHHHHHHHHHHHHHHHH--CTHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCC--c----------------ccCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHH
Confidence            87764210  0                0111225677777888888888766  2567788888888888888765

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.83  E-value=1.3e-19  Score=173.46  Aligned_cols=252  Identities=15%  Similarity=0.078  Sum_probs=170.3

Q ss_pred             CeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHH
Q 017640           67 KLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE  140 (368)
Q Consensus        67 ~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~  140 (368)
                      +.-|+|..+      .|+.++.+.+++.+.+......   + +     ..+...+++++++++++ .. ++|+|++|+++
T Consensus        52 g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~---~-~-----~~~~~~~l~~~la~~~~-~~-~~v~~~~~Gse  120 (429)
T 3k28_A           52 GNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSF---G-A-----PTEIENKLAKLVIERVP-SI-EIVRMVNSGTE  120 (429)
T ss_dssp             CCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSCC---S-S-----CCHHHHHHHHHHHHHST-TC-SEEEEESSHHH
T ss_pred             CCEEEECCCChhhcccCCCCHHHHHHHHHHHhhCcCc---C-C-----CCHHHHHHHHHHHHhCC-CC-CEEEEeCChHH
Confidence            445777654      3356999999999988764211   1 0     12445578999999987 33 49999999999


Q ss_pred             HHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcC-------------------CEEEEEeCCCCCCCCHHHH
Q 017640          141 AINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTG-------------------ANLKFLNLNDDESPDLDKL  201 (368)
Q Consensus       141 a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g-------------------~~v~~v~~~~~~~~d~~~l  201 (368)
                      |+..++..+..  ..+++.|++.++.|++.......   ..|                   .++..++.+     |+++|
T Consensus       121 a~~~ai~~a~~--~~~~~~vi~~~~~yhg~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l  190 (429)
T 3k28_A          121 ATMSALRLARG--YTGRNKILKFIGCYHGHGDSLLI---KAGSGVATLGLPDSPGVPEGVAKNTITVAYN-----DLESV  190 (429)
T ss_dssp             HHHHHHHHHHH--HHTCCEEEEEETCCCCSCGGGCS---SCCTTC-----CCCTTCCHHHHTTEEEEETT-----CHHHH
T ss_pred             HHHHHHHHHHH--hhCCCEEEEECCCcCCCcHHHHH---hcCCcccccCCCCcCCCCCcccCceeecCCC-----CHHHH
Confidence            99999987621  13678899999988864322111   011                   133344443     89999


Q ss_pred             HHhcc---cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCcC---Ccc-cccCCCCCccEEEecCcC
Q 017640          202 KEMLS---RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQSV---PHM-VVDVQGLDADFLVASSHK  270 (368)
Q Consensus       202 ~~~l~---~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~~---~~~-~~~~~~~~~d~~~~s~~K  270 (368)
                      +++++   +++++|+++.+++++|.+.|    +++|.++|++||+++|+||+|.-   |.. ..+.....+|+++  ++|
T Consensus       191 e~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~~~~di~t--~sK  268 (429)
T 3k28_A          191 KYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAYNCGQGYYGVTPDLTC--LGK  268 (429)
T ss_dssp             HHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTSSTTHHHHHHTCCCSEEE--ECG
T ss_pred             HHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchHHHHhCCCCceeh--hhh
Confidence            99886   46788889988888999988    99999999999999999999962   111 1111223467654  569


Q ss_pred             cCCC-CcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH
Q 017640          271 MCGP-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYE  349 (368)
Q Consensus       271 ~~g~-~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~  349 (368)
                      .+|+ ..+|++++++++++.+.+....                  ......+.+..+.+++.++++..+    +.+.++.
T Consensus       269 ~~~~G~~iG~~~~~~~~~~~~~~~~~~------------------~~~~t~~~~~~a~aaa~aal~~~~----~~~~~~~  326 (429)
T 3k28_A          269 VIGGGLPVGAYGGKAEIMRQVAPSGPI------------------YQAGTLSGNPLAMAAGYETLVQLT----PESYVEF  326 (429)
T ss_dssp             GGGTTSCCEEEEECHHHHTTBTTTSSB------------------CCCCTTTTCHHHHHHHHHHHHTCC----HHHHHHH
T ss_pred             hhcCCCCeEEEEEcHHHHhhhccCCCc------------------cccCCCCCChHHHHHHHHHHHHHH----HHHHHHH
Confidence            7764 2389999999998877542100                  001112456666666666665432    6677788


Q ss_pred             HHHHHHHHHHHHhh
Q 017640          350 VKWIICSIIVIQER  363 (368)
Q Consensus       350 ~~l~~~l~~~l~~~  363 (368)
                      +++.+++.+.|.++
T Consensus       327 ~~~~~~l~~~L~~~  340 (429)
T 3k28_A          327 ERKAEMLEAGLRKA  340 (429)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888888887764

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.82  E-value=3.1e-19  Score=170.57  Aligned_cols=254  Identities=17%  Similarity=0.121  Sum_probs=171.5

Q ss_pred             eEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHH
Q 017640           68 LVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEA  141 (368)
Q Consensus        68 ~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a  141 (368)
                      .-|+|..+      .|+.++.+.+++.+.+.....+   +.      ..+...+++++++++++ +. ++|+|++|+++|
T Consensus        52 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~---~~------~~~~~~~la~~l~~~~~-~~-~~v~~~~ggsea  120 (427)
T 3fq8_A           52 NRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSF---GA------PCALENVLAEMVNDAVP-SI-EMVRFVNSGTEA  120 (427)
T ss_dssp             CEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCC---SS------CCHHHHHHHHHHHHHST-TC-SEEEEESSHHHH
T ss_pred             CEEEECCCchhhhccCCCCHHHHHHHHHHHHhCCCc---CC------CCHHHHHHHHHHHHhCC-CC-CEEEEeCCHHHH
Confidence            34666643      2346999999999888653211   10      24556689999999997 33 499999999999


Q ss_pred             HHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHH----HHH------------cCCEEEEEeCCCCCCCCHHHHHHhc
Q 017640          142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLV----AQK------------TGANLKFLNLNDDESPDLDKLKEML  205 (368)
Q Consensus       142 ~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~----~~~------------~g~~v~~v~~~~~~~~d~~~l~~~l  205 (368)
                      +..++.....  ..+++.|++.++.|++........    ...            .+.++..++.+     |+++|++++
T Consensus       121 ~~~al~~a~~--~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l  193 (427)
T 3fq8_A          121 CMAVLRIMRA--YTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN-----DLEAVKALF  193 (427)
T ss_dssp             HHHHHHHHHH--HHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT-----CHHHHHHHH
T ss_pred             HHHHHHHHHH--hhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC-----CHHHHHHHH
Confidence            9999954310  234578999888888643211100    000            01124555544     899999998


Q ss_pred             cc---CceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc---CCcc-cccCCCCCccEEEecCcCcCCC
Q 017640          206 SR---KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS---VPHM-VVDVQGLDADFLVASSHKMCGP  274 (368)
Q Consensus       206 ~~---~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~---~~~~-~~~~~~~~~d~~~~s~~K~~g~  274 (368)
                      ++   ++++|+++.+++++|.+.|    +++|.++|++||+++|+|++|+   .|.. ..+.....+|++  +++|.+|+
T Consensus       194 ~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~~~~di~--t~sK~~~~  271 (427)
T 3fq8_A          194 AENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAYGGVQEKFGVTPDLT--TLGKIIGG  271 (427)
T ss_dssp             HHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTHHHHHTTCCCSEE--EECGGGGT
T ss_pred             HhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchhhHhcCCCCChh--hhhhhhhC
Confidence            76   6789999999999999999    9999999999999999999998   1211 112223346765  55598873


Q ss_pred             Cc--ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Q 017640          275 TG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKW  352 (368)
Q Consensus       275 ~G--~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l  352 (368)
                       |  +|++++++++++.+.+....                  ......+.+..+.+++.++++.+.+   +.+.++.+++
T Consensus       272 -G~~~G~~~~~~~~~~~~~~~~~~------------------~~~~t~~~~~~~~aa~~aal~~~~~---~~~~~~~~~~  329 (427)
T 3fq8_A          272 -GLPVGAYGGKREIMQLVAPAGPM------------------YQAGTLSGNPLAMTAGIKTLELLRQ---PGTYEYLDQI  329 (427)
T ss_dssp             -TSSCEEEEECHHHHTTBTTTSSB------------------CCCCTTTTCHHHHHHHHHHHHHHTS---TTHHHHHHHH
T ss_pred             -CcceEEEEEcHHHHHhhccCCCc------------------cccCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHH
Confidence             5  99999999998877643110                  0001114577777778788876654   3456667777


Q ss_pred             HHHHHHHHHhh
Q 017640          353 IICSIIVIQER  363 (368)
Q Consensus       353 ~~~l~~~l~~~  363 (368)
                      .+++.+.|.+.
T Consensus       330 ~~~~~~~l~~~  340 (427)
T 3fq8_A          330 TKRLSDGLLAI  340 (427)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777766653

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.82  E-value=5e-19  Score=169.23  Aligned_cols=256  Identities=14%  Similarity=0.105  Sum_probs=167.8

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..+      .|+.++.+.+++.+.+......   + +     ..+...+++++++++++ .. ++|+|++|++
T Consensus        51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~---~-~-----~~~~~~~la~~l~~~~~-~~-~~v~~~~sGs  119 (429)
T 4e77_A           51 DGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSF---G-A-----PTEMEVKMAQLVTDLVP-TM-DMVRMVNSGT  119 (429)
T ss_dssp             TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCC---S-S-----CCHHHHHHHHHHHHHST-TC-SEEEEESSHH
T ss_pred             CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCccc---C-C-----CCHHHHHHHHHHHhhCC-CC-CEEEEeCcHH
Confidence            3445777753      2346899999999988653211   1 1     12455688999999997 33 4999999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcC-----------------CEEEEEeCCCCCCCCHHHHH
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTG-----------------ANLKFLNLNDDESPDLDKLK  202 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g-----------------~~v~~v~~~~~~~~d~~~l~  202 (368)
                      +|+..++.....  ..+++.|++.++.|++......... ..+                 ..+..++.+     |+++|+
T Consensus       120 ea~~~al~~a~~--~~~~~~ii~~~~~yhg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le  191 (429)
T 4e77_A          120 EATMSAIRLARG--YTGRDKIIKFEGCYHGHADCLLVKA-GSGALTLGQPNSPGVPTDFAKHTLTCTYN-----DLASVR  191 (429)
T ss_dssp             HHHHHHHHHHHH--HHCCCEEEEETTCCCC-------------------CCCTTSCGGGGTTEEEECTT-----CHHHHH
T ss_pred             HHHHHHHHHHHH--hhCCCEEEEEcCccCCCChhhhhhc-CCcccccCCCCcCCCCCccCCceeecCCC-----CHHHHH
Confidence            999999985411  2356789999999988654222110 001                 112223322     899999


Q ss_pred             Hhccc---CceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc---CCcc-cccCCCCCccEEEecCcCc
Q 017640          203 EMLSR---KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS---VPHM-VVDVQGLDADFLVASSHKM  271 (368)
Q Consensus       203 ~~l~~---~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~---~~~~-~~~~~~~~~d~~~~s~~K~  271 (368)
                      +++++   ++++|+++..++.+|.+.|    +++|.++|++||+++|+|++|+   .|.. ..+.....+|++  |++|.
T Consensus       192 ~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g~~~~~~~~~~~pdi~--t~sK~  269 (429)
T 4e77_A          192 QAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVALAGAQDYYHVIPDLT--CLGKI  269 (429)
T ss_dssp             HHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTBTTCHHHHTTCCCSEE--EEEGG
T ss_pred             HHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccCcchHHHhcCCCCCee--eeccc
Confidence            99863   5678888777777888888    9999999999999999999998   2221 112223346765  66697


Q ss_pred             CCC-CcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH
Q 017640          272 CGP-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEV  350 (368)
Q Consensus       272 ~g~-~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~  350 (368)
                      +|+ ..+|++++++++++.+.+....                  ......+.+..+.+++.++++.+++   +.+.++.+
T Consensus       270 ~~~G~~~G~~~~~~~~~~~l~~~~~~------------------~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~  328 (429)
T 4e77_A          270 IGGGMPVGAFGGRREVMNALAPTGPV------------------YQAGTLSGNPIAMAAGFACLTEISQ---VGVYETLT  328 (429)
T ss_dssp             GGTTSCCEEEEECHHHHTTBTTTSSB------------------CC--CCCCCHHHHHHHHHHHHHHTS---TTHHHHHH
T ss_pred             ccCCCCeEEEEECHHHHHHhccCCCc------------------cccCCCCCCHHHHHHHHHHHHHHHh---cCHHHHHH
Confidence            763 2389999999988877643100                  0111225777888888888887754   34556666


Q ss_pred             HHHHHHHHHHHhh
Q 017640          351 KWIICSIIVIQER  363 (368)
Q Consensus       351 ~l~~~l~~~l~~~  363 (368)
                      ++.+++.+.|.+.
T Consensus       329 ~~~~~l~~~L~~~  341 (429)
T 4e77_A          329 ELTDSLATGLRHA  341 (429)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6777776666553

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.82  E-value=5.7e-19  Score=170.38  Aligned_cols=260  Identities=13%  Similarity=0.020  Sum_probs=172.2

Q ss_pred             CeEEeccCC------CCCCcHHHHHHHHHHHHHhhc-cCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           67 KLVYLDNAA------TSQKPIAVLKALQNYYEAYNS-NVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        67 ~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      +.-|+|..+      .|+.++.+.+++.+.+..... ++.      .....+...+++++++++++.+.+ .|+|++|++
T Consensus        49 g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~------~~~~~~~~~~la~~l~~~~~~~~~-~v~~~~ggs  121 (459)
T 4a6r_A           49 GNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTF------FKTTHPAVVELSSLLAEVTPAGFD-RVFYTNSGS  121 (459)
T ss_dssp             CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTT------SSSCCHHHHHHHHHHHHHSCTTCC-EEEEESSHH
T ss_pred             CCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccccc------cccCCHHHHHHHHHHHHhCCCCCC-EEEEeCchH
Confidence            345777653      446689999999999876431 111      011235556899999999987654 999999999


Q ss_pred             HHHHHHHHHccCC----CCCCCCEEEEcCCCCcccHHHHHHHHH---------HcCCEEEEEeCCC-----CCCCC----
Q 017640          140 EAINLVAYSWGLS----NLKSGDEVILTVAEHHSAIVPWQLVAQ---------KTGANLKFLNLND-----DESPD----  197 (368)
Q Consensus       140 ~a~~~~~~~~~~~----~~~~gd~vl~~~~~~~s~~~~~~~~~~---------~~g~~v~~v~~~~-----~~~~d----  197 (368)
                      +|+..++..+...    .-.+++.|++.++.|++..........         .....+..++...     ++ .|    
T Consensus       122 eA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~  200 (459)
T 4a6r_A          122 ESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEF  200 (459)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHH
Confidence            9999999987210    002578999999999986543333210         0011334444321     12 34    


Q ss_pred             ----HHHHHHhcc----cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCC
Q 017640          198 ----LDKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLD  260 (368)
Q Consensus       198 ----~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~  260 (368)
                          +++|++++.    +++++|+++.+++++|.+.+    +++|.++|++||+++|+||+|. ++..    ..+.....
T Consensus       201 ~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~  280 (459)
T 4a6r_A          201 GVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQ  280 (459)
T ss_dssp             HHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCC
Confidence                788888886    45688888888888888887    9999999999999999999987 4322    11222335


Q ss_pred             ccEEEecCcCcCCCC--cceEEEEcccccccCC---CcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 017640          261 ADFLVASSHKMCGPT--GIGFLFGKSDLLSAMP---PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAID  335 (368)
Q Consensus       261 ~d~~~~s~~K~~g~~--G~G~l~~~~~li~~l~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~  335 (368)
                      +|++++  +|.+++.  .+|++++++++++.+.   +...+.+.                     +.+..+.+++.++++
T Consensus       281 pdi~t~--sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~---------------------~~~~~~~aaa~aal~  337 (459)
T 4a6r_A          281 PDLFTA--AKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTY---------------------SGHPVCAAVAHANVA  337 (459)
T ss_dssp             CSEEEE--CGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHHH---------------------CSCHHHHHHHHHHHH
T ss_pred             CCeeeh--hhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCCC---------------------CCCHHHHHHHHHHHH
Confidence            777765  5976653  4899999999887765   22222111                     456677777788888


Q ss_pred             HHHHhCHHHHHHHHH-HHHHHHHHHH
Q 017640          336 YLSTIGMQKIHAYEV-KWIICSIIVI  360 (368)
Q Consensus       336 ~~~~~g~~~i~~~~~-~l~~~l~~~l  360 (368)
                      .+++..   +.++.+ ++.+++.+.|
T Consensus       338 ~~~~~~---~~~~~~~~~~~~~~~~l  360 (459)
T 4a6r_A          338 ALRDEG---IVQRVKDDIGPYMQKRW  360 (459)
T ss_dssp             HHHHTC---HHHHHHHTHHHHHHHHH
T ss_pred             HHhcch---HHHHHHHHHHHHHHHHH
Confidence            776533   344444 4555555554

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.81  E-value=5.7e-20  Score=177.62  Aligned_cols=258  Identities=15%  Similarity=0.095  Sum_probs=162.1

Q ss_pred             CeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHH
Q 017640           67 KLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVA  146 (368)
Q Consensus        67 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~  146 (368)
                      +..|+|+....+. +.+.+++.+.+...  .   ..+.    ......+++++++++++.+   ++++|+|+|+|+..++
T Consensus        40 ~~~ylD~~~~~~~-~~v~~a~~~~l~~~--~---~~y~----~~~~~~~l~~~la~~~~~~---~v~~t~~gt~A~~~al  106 (467)
T 2oqx_A           40 EDVFIDLLTDSGT-GAVTQSMQAAMMRG--D---EAYS----GSRSYYALAESVKNIFGYQ---YTIPTHQGRGAEQIYI  106 (467)
T ss_dssp             GGCSEECSCCSSC-SCCCHHHHHHTTSC--C---CCSS----SCHHHHHHHHHHHHHHCCS---EEEEEC--CCSHHHHH
T ss_pred             CCeeEecccCCCc-HHHHHHHHHHhccC--c---ceec----cCchhHHHHHHHHHHhCcC---cEEEcCCcHHHHHHHH
Confidence            4468888654444 67777776665321  0   0111    1234457899999999873   8999999999999999


Q ss_pred             HHccCCCCCC-----C----CEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe------CC----CCCCCCHHHHHHhccc
Q 017640          147 YSWGLSNLKS-----G----DEVILTVAEHHSAIVPWQLVAQKTGANLKFLN------LN----DDESPDLDKLKEMLSR  207 (368)
Q Consensus       147 ~~~~~~~~~~-----g----d~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~------~~----~~~~~d~~~l~~~l~~  207 (368)
                      .++    .++     |    |+|++. +.|...+   .......|+.+....      .+    .++.+|+++|++++++
T Consensus       107 ~~~----~~~~~~~~G~~~~d~Ii~~-~~h~~t~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~  178 (467)
T 2oqx_A          107 PVL----IKKREQEKGLDRSKMVAFS-NYFFDTT---QGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEE  178 (467)
T ss_dssp             HHH----HHHHHHHHCCCTTTCEEEE-SSCCHHH---HHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHH
T ss_pred             HHH----hccccccCCCCccceEEec-ccccccc---hhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHh
Confidence            988    556     7    887776 4554433   222334466665432      12    2467899999999973


Q ss_pred             ----CceEEEEccccccc-ccccC---HHHHHHHHHhcCCEEEEecCCcC-----------CcccccCCC------CCcc
Q 017640          208 ----KTKLVVIHHISNML-ASILP---IEEIVHWSHDVGAKVLVDACQSV-----------PHMVVDVQG------LDAD  262 (368)
Q Consensus       208 ----~~~~v~~~~~~n~t-G~~~~---l~~i~~l~~~~g~~li~D~a~~~-----------~~~~~~~~~------~~~d  262 (368)
                          ++++|++++++||+ |.+++   +++|.++|++||+++|+|++|+.           +....+...      ...|
T Consensus       179 ~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d  258 (467)
T 2oqx_A          179 VGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYAD  258 (467)
T ss_dssp             HCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCS
T ss_pred             cCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCC
Confidence                78999999999998 88777   78999999999999999987765           111111111      2367


Q ss_pred             EEEecCcCcCCCCcceEEEEccc-cccc---CCCcc-cCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 017640          263 FLVASSHKMCGPTGIGFLFGKSD-LLSA---MPPFL-GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL  337 (368)
Q Consensus       263 ~~~~s~~K~~g~~G~G~l~~~~~-li~~---l~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~  337 (368)
                      ++++|+||.+|++-.|+++.+++ +++.   +++.. .+++.                 ...++.+...+.++..+++..
T Consensus       259 ~~~~s~sK~~g~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~al~~~l~~~  321 (467)
T 2oqx_A          259 MLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGF-----------------PTYGGLEGGAMERLAVGLYDG  321 (467)
T ss_dssp             EEEEESSSTTCCSSCEEEEECSGGGHHHHHHHHHHHHHTTSS-----------------CCCCCCCHHHHHHHHHHHHHT
T ss_pred             eEEEecccccCCCCceEEEecChhHHHHHHHHHHhhhccCCc-----------------ccccchhhhHHHHHHHhhHhh
Confidence            88999999888662378888776 4433   33221 11111                 112344544444443332211


Q ss_pred             HHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          338 STIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       338 ~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                        .. +...++..++.+++.+.|.+. |+
T Consensus       322 --~~-~~~~~~~~~~~~~l~~~L~~~-~~  346 (467)
T 2oqx_A          322 --MN-LDWLAYRIAQVQYLVDGLEEI-GV  346 (467)
T ss_dssp             --TC-HHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             --hh-HHHHHHHHHHHHHHHHHHHHC-CC
Confidence              11 122344567788888888776 54

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.81  E-value=2.8e-18  Score=166.16  Aligned_cols=271  Identities=11%  Similarity=0.060  Sum_probs=179.0

Q ss_pred             CeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHH
Q 017640           67 KLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE  140 (368)
Q Consensus        67 ~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~  140 (368)
                      +.-|+|..+      .|+.++.+.+++.+.+.........      ....+...++.++++++++.+.+ .|+|++|+++
T Consensus        53 G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~------~~~~~~~~~la~~l~~~~~~~~~-~v~~~~sGse  125 (476)
T 3i5t_A           53 GRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPW------YMATSPAARLAEKIATLTPGDLN-RIFFTTGGST  125 (476)
T ss_dssp             CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTT------TCBCHHHHHHHHHHHTTSSTTCC-EEEEESSHHH
T ss_pred             CCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcccC------ccCCHHHHHHHHHHHhcCCCCcC-EEEEeCchHH
Confidence            345677642      4567999999999998874221110      11245566889999999876554 9999999999


Q ss_pred             HHHHHHHHccCCC----CCCCCEEEEcCCCCcccHHHHHHHHHH------c---CCEEEEEeCCCC--C-CCC-------
Q 017640          141 AINLVAYSWGLSN----LKSGDEVILTVAEHHSAIVPWQLVAQK------T---GANLKFLNLNDD--E-SPD-------  197 (368)
Q Consensus       141 a~~~~~~~~~~~~----~~~gd~vl~~~~~~~s~~~~~~~~~~~------~---g~~v~~v~~~~~--~-~~d-------  197 (368)
                      |+..++..+....    -..++.|++.++.|++...........      .   ...+..++....  . ..|       
T Consensus       126 A~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  205 (476)
T 3i5t_A          126 AVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDD  205 (476)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHH
Confidence            9999999872100    034679999999999865433222100      0   012334442211  1 112       


Q ss_pred             -HHHHHHhcc----cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----ccc-CCCCCcc
Q 017640          198 -LDKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVD-VQGLDAD  262 (368)
Q Consensus       198 -~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~-~~~~~~d  262 (368)
                       +++|+++++    +++++|+++.+++++|.+.+    +++|.++|++||+++|+||+|+ +|..    ..+ .....+|
T Consensus       206 ~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pd  285 (476)
T 3i5t_A          206 LVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPD  285 (476)
T ss_dssp             HHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCS
T ss_pred             HHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCceeeecccCCCcc
Confidence             778888886    46789999999999998666    9999999999999999999997 4322    122 3334578


Q ss_pred             EEEecCcCcCCC--CcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 017640          263 FLVASSHKMCGP--TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI  340 (368)
Q Consensus       263 ~~~~s~~K~~g~--~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~  340 (368)
                      +++.  +|.+|.  -.+|++++++++++.+.+........              ......+.+..+.+++.++++.+++ 
T Consensus       286 i~t~--sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~--------------~~~~t~~~np~a~aAa~aaL~~~~~-  348 (476)
T 3i5t_A          286 IITF--AKGVTSGYVPLGGLAISEAVLARISGENAKGSWF--------------TNGYTYSNQPVACAAALANIELMER-  348 (476)
T ss_dssp             EEEE--CGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEE--------------CCCCTTTTCHHHHHHHHHHHHHHHH-
T ss_pred             hhhh--hhhhcCCCcCeEEEEECHHHHHHHhcCCcccccc--------------cccCCCCcCHHHHHHHHHHHHHHHh-
Confidence            8765  497654  34799999999988877531100000              0001125567777888888887766 


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHhh
Q 017640          341 GMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       341 g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                        +.+.++.+++.+++.+.|.++
T Consensus       349 --~~~~~~~~~~~~~l~~~L~~l  369 (476)
T 3i5t_A          349 --EGIVDQAREMADYFAAALASL  369 (476)
T ss_dssp             --TTHHHHHHHHHHHHHHHHHTT
T ss_pred             --HHHHHHHHHHHHHHHHHHHHH
Confidence              346677778888888877753

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=99.80  E-value=6.3e-19  Score=167.29  Aligned_cols=269  Identities=13%  Similarity=-0.053  Sum_probs=172.9

Q ss_pred             eEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc-CCCCC-C--cEEEeCC
Q 017640           68 LVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI-NASDS-G--EIVFTKN  137 (368)
Q Consensus        68 ~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~-~~~~~-~--~v~~t~g  137 (368)
                      .|+|.-|      +..+..+.|++|.++.++...  .+  .|.    ....+.++|+++++++ |.... +  ..+.|.|
T Consensus        46 kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~--~~--~Y~----p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~g  117 (420)
T 4h51_A           46 KANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNL--DY--EYL----PISGYQPFIDEAVKIIYGNTVELENLVAVQTLS  117 (420)
T ss_dssp             CEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTC--CC--CCC----CTTCCHHHHHHHHHHHHC---CGGGEEEEEEEH
T ss_pred             CEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCC--CC--CCC----CcCChHHHHHHHHHHhcCCCccccccceeeecC
Confidence            5666665      334667889888776665321  11  111    1223447888888765 33211 1  3355789


Q ss_pred             HHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCE-EEEEeCC--CCCCCCHHHHHHhcc---cCceE
Q 017640          138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGAN-LKFLNLN--DDESPDLDKLKEMLS---RKTKL  211 (368)
Q Consensus       138 ~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~-v~~v~~~--~~~~~d~~~l~~~l~---~~~~~  211 (368)
                      +|.|+..++..+.+...++||+|++++|.|+...    ..++..|.+ +...+..  .++.+|.+.+.+.+.   +++++
T Consensus       118 gtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~----~i~~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~v  193 (420)
T 4h51_A          118 GTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHY----GVVKAAGWKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVF  193 (420)
T ss_dssp             HHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHH----HHHHHTTCCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEE
T ss_pred             chHHHHHHHHHHHHhcCCCCCEEEEecCCchhHH----HHHHHcCCeEEEeeccccccccCCCHHHHHHHHhccCCCcEE
Confidence            9999988887765445789999999999888744    444556876 4444432  346678888877664   46788


Q ss_pred             EEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcC-Ccccc--c-------CCCCCccEEEecCcCcCCCCc--
Q 017640          212 VVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSV-PHMVV--D-------VQGLDADFLVASSHKMCGPTG--  276 (368)
Q Consensus       212 v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~-~~~~~--~-------~~~~~~d~~~~s~~K~~g~~G--  276 (368)
                      ++++.|+||||..++   +++|+++|+++++++++|++|.- .....  +       .+.....+++.|+||.|+.+|  
T Consensus       194 ll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R  273 (420)
T 4h51_A          194 ILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSER  273 (420)
T ss_dssp             EEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGC
T ss_pred             EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCc
Confidence            899999999999999   77999999999999999999862 11100  0       122235688889999999999  


Q ss_pred             ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH------HHHHhCHHHHHHHHH
Q 017640          277 IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAID------YLSTIGMQKIHAYEV  350 (368)
Q Consensus       277 ~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~------~~~~~g~~~i~~~~~  350 (368)
                      +|++++..+.++.......--..              ..+.....++..+...+...+.      .++. .++.++++.+
T Consensus       274 vG~~~~~~~~~~~~~~~~~~l~~--------------~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~-~~~~m~~r~~  338 (420)
T 4h51_A          274 AGTLSLLLKDKTKRADVKSVMDS--------------LIREEYTCPPAHGARLAHLILSNNELRKEWEA-ELSAMAERIR  338 (420)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHH--------------HHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHH-HHHHHHHHHH
T ss_pred             eEEEEecccCHHHHHHHHHHHHH--------------hhhcccCcchHHHHHHHHHHhcCHHHHHHHHH-HHHHHHHHHH
Confidence            99999877655432211100000              0111122455555554444443      1121 3678888888


Q ss_pred             HHHHHHHHHHHhh
Q 017640          351 KWIICSIIVIQER  363 (368)
Q Consensus       351 ~l~~~l~~~l~~~  363 (368)
                      +.++.+.+.|.+.
T Consensus       339 ~~R~~l~~~L~~~  351 (420)
T 4h51_A          339 TMRRTVYDELLRL  351 (420)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            8999998888765

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.79  E-value=9.1e-19  Score=165.58  Aligned_cols=231  Identities=11%  Similarity=0.073  Sum_probs=159.3

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEE
Q 017640          106 SAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANL  185 (368)
Q Consensus       106 ~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v  185 (368)
                      ++......+.+...+.+++|.+.....++++|+|.++..++.+..+....+++.|+++...|.|+..+    +...|+.+
T Consensus        93 ~~~~~~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kA----l~l~Gl~p  168 (450)
T 3bc8_A           93 SSLLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKS----MVTAGFEP  168 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHH----HHHTTCEE
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHH----HHHcCCee
Confidence            34455677789999999999987656789999984444444444221122378999999999996554    45569999


Q ss_pred             EEEeC---CCCCCCCHHHHHHhccc----CceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccc-cC-
Q 017640          186 KFLNL---NDDESPDLDKLKEMLSR----KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVV-DV-  256 (368)
Q Consensus       186 ~~v~~---~~~~~~d~~~l~~~l~~----~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~-~~-  256 (368)
                      ++++.   ++.+.+|++.|+++|++    .+.+|+.+...+.+|.+.|+++|+++|++||+++++|+||+...... ++ 
T Consensus       169 ~~v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~  248 (450)
T 3bc8_A          169 VVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLI  248 (450)
T ss_dssp             EEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHH
T ss_pred             EEEEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhHhHH
Confidence            88876   34578999999999965    33455555555556789999999999999999999999999644321 11 


Q ss_pred             -C--C-CCccEEEecCcC-cCCCCcceEEEEcc-cccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHH
Q 017640          257 -Q--G-LDADFLVASSHK-MCGPTGIGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGL  330 (368)
Q Consensus       257 -~--~-~~~d~~~~s~~K-~~g~~G~G~l~~~~-~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~  330 (368)
                       .  . -+.|+++.|.|| .+.+.|++++++++ +.++.+...+.|                    ...++|   + +.+
T Consensus       249 ~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~~~~g--------------------~~s~Sp---s-L~l  304 (450)
T 3bc8_A          249 QQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPG--------------------RASASP---S-LDV  304 (450)
T ss_dssp             HHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSCS--------------------CBCSHH---H-HHH
T ss_pred             HHHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHHHHHhhc--------------------CCcccH---H-HHH
Confidence             1  1 268999999999 56688899999854 344433322211                    011112   2 223


Q ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhc
Q 017640          331 GAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERH  364 (368)
Q Consensus       331 ~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~  364 (368)
                      ..++..+-..++.++.++..++++++.+.|.++.
T Consensus       305 ~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~  338 (450)
T 3bc8_A          305 LITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLA  338 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            3333333444677777778899999999998887

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.77  E-value=5e-17  Score=157.23  Aligned_cols=264  Identities=12%  Similarity=0.061  Sum_probs=165.1

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHHHHHh-hccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCH
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAY-NSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNA  138 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~  138 (368)
                      ++..|+|..+      .|+.++.+.+++.+.+... ..+..  .+. .....+..+.+.+.++++++... +.|+|++|+
T Consensus        61 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~--~~~-~~~~~~l~~~la~~l~~~~~~~~-~~v~f~~sG  136 (472)
T 1ohv_A           61 DGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRP--ALG-ILPPENFVEKLRESLLSVAPKGM-SQLITMACG  136 (472)
T ss_dssp             TSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCC--CTT-TSCBTTHHHHHHHTGGGGCCTTC-CEEEEESSH
T ss_pred             CCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhccccccc--ccc-cccHHHHHHHHHHHHHHhCCCCc-CEEEEeCCc
Confidence            3445777642      4667999999998875432 11110  000 00012333344444555554443 489999999


Q ss_pred             HHHHHHHHHHccCC------C---C------------CCC---CEEEEcCCCCcccHHHHHHHHH-----HcCCEE---E
Q 017640          139 TEAINLVAYSWGLS------N---L------------KSG---DEVILTVAEHHSAIVPWQLVAQ-----KTGANL---K  186 (368)
Q Consensus       139 t~a~~~~~~~~~~~------~---~------------~~g---d~vl~~~~~~~s~~~~~~~~~~-----~~g~~v---~  186 (368)
                      ++|+..+++.+...      .   .            ++|   +.|++.++.||+.......+..     ..+...   .
T Consensus       137 seA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~  216 (472)
T 1ohv_A          137 SCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWP  216 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCC
T ss_pred             hhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCc
Confidence            99999999876210      0   0            134   8999999999986654433311     112111   1


Q ss_pred             EEeCCCC-C-------------CCCHHHHHHhccc------CceEEEEcccccccccccC----HHHHHHHHHhcCCEEE
Q 017640          187 FLNLNDD-E-------------SPDLDKLKEMLSR------KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVL  242 (368)
Q Consensus       187 ~v~~~~~-~-------------~~d~~~l~~~l~~------~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li  242 (368)
                      .+++... .             ..|+++|++++++      ++++|+++.++|++|.+.|    +++|.++|++||+++|
T Consensus       217 ~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli  296 (472)
T 1ohv_A          217 IAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFL  296 (472)
T ss_dssp             EECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             ccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEE
Confidence            2222110 0             1268889999876      7899999999999998877    9999999999999999


Q ss_pred             EecCCc-CCccc--ccCCCCC----ccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCC
Q 017640          243 VDACQS-VPHMV--VDVQGLD----ADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPS  315 (368)
Q Consensus       243 ~D~a~~-~~~~~--~~~~~~~----~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~  315 (368)
                      +|++|+ +|...  +..+.++    +|+++  ++|.+ ..| |+++ ++++. .+.+...                    
T Consensus       297 ~DEv~~g~g~~g~~~~~~~~gv~~~~Di~t--~sK~~-l~G-G~~~-~~~~~-~~~~~~~--------------------  350 (472)
T 1ohv_A          297 VDEVQTGGGSTGKFWAHEHWGLDDPADVMT--FSKKM-MTG-GFFH-KEEFR-PNAPYRI--------------------  350 (472)
T ss_dssp             EECTTTTTTTTSSSSGGGGGCCSSCCSEEE--ECGGG-SSE-EEEE-CGGGS-CSSSSSS--------------------
T ss_pred             EeCcccCCCCCCCchhccccCCCCCCCEEE--Ecccc-ccC-CccC-chhhc-ccccccc--------------------
Confidence            999998 44431  2333333    78764  55974 223 7766 55542 2222211                    


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          316 RFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       316 ~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                       +...+.+..+.+++.++++.+.+.   .+.++.+++.+++.+.|.++
T Consensus       351 -~~T~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l  394 (472)
T 1ohv_A          351 -FNTWLGDPSKNLLLAEVINIIKRE---DLLSNAAHAGKVLLTGLLDL  394 (472)
T ss_dssp             -CCSSSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHH
T ss_pred             -cCccCccHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHH
Confidence             111245777888888999988763   35678888888888887764

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.76  E-value=5.3e-18  Score=158.46  Aligned_cols=215  Identities=12%  Similarity=0.092  Sum_probs=155.5

Q ss_pred             HHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCC----CCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC-
Q 017640          117 RKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKS----GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN-  191 (368)
Q Consensus       117 r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~----gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~-  191 (368)
                      ..+|. .+|.+.....++++|+|.++..++.+.    +++    +|.|+++..+|.|++.++.    ..|+++++++.. 
T Consensus       123 ld~L~-~~G~~~~~~~flVnGsTgg~lamilaa----~r~~rpg~d~VIvpRn~HKSv~kAli----L~Gl~Pv~V~p~~  193 (501)
T 3hl2_A          123 LDIIK-LAGVHTVANCFVVPMATGMSLTLCFLT----LRHKRPKAKYIIWPRIDQKSCFKSMI----TAGFEPVVIENVL  193 (501)
T ss_dssp             HHHHH-HTTCTTCCEEEEESSCHHHHHHHHHHH----HHHHCTTCCEEEEECCCCHHHHHHHH----HTTCEEEEECEEE
T ss_pred             HHHHH-HcCCCCCCcEEEECcHHHHHHHHHHHH----cCcccCCCCEEEEecchHHHHHHHHH----HcCCeEEEEeeee
Confidence            33344 449986657899999997777766665    342    4999999999999776544    459999999873 


Q ss_pred             --CCCCCCHHHHHHhcccC---ceEE-EEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccc-c----CCCCC
Q 017640          192 --DDESPDLDKLKEMLSRK---TKLV-VIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVV-D----VQGLD  260 (368)
Q Consensus       192 --~~~~~d~~~l~~~l~~~---~~~v-~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~-~----~~~~~  260 (368)
                        +...+|++.++++|++.   ..++ +.+.+.+..|.+.|+++|+++|++||+++++|+||+...... +    .-..+
T Consensus       194 d~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~G  273 (501)
T 3hl2_A          194 EGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVG  273 (501)
T ss_dssp             ETTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHS
T ss_pred             cccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcC
Confidence              34678999999999752   2333 343334445567889999999999999999999999654321 1    11235


Q ss_pred             -ccEEEecCcC-cCCCCcceEEEEcc-cccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 017640          261 -ADFLVASSHK-MCGPTGIGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL  337 (368)
Q Consensus       261 -~d~~~~s~~K-~~g~~G~G~l~~~~-~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~  337 (368)
                       .|+++.|.|| .+.+-|.|+++.++ ++++.+...+.                        |+.+....+.+..++..+
T Consensus       274 rAD~vVqS~HK~llvpIGG~ii~~~d~e~l~~~~~~yP------------------------Gr~S~Spsldl~~tLL~l  329 (501)
T 3hl2_A          274 RIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYP------------------------GRASASPSLDVLITLLSL  329 (501)
T ss_dssp             CCCEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHHTSC------------------------SCBCSHHHHHHHHHHHHH
T ss_pred             CCcEEEecccccceeecCceEEEeCCHHHHHHHHHhCC------------------------CCCCCcHHHHHHHHHHHH
Confidence             9999999999 56677767776655 45555433322                        344455556566666666


Q ss_pred             HHhCHHHHHHHHHHHHHHHHHHHHhhc
Q 017640          338 STIGMQKIHAYEVKWIICSIIVIQERH  364 (368)
Q Consensus       338 ~~~g~~~i~~~~~~l~~~l~~~l~~~~  364 (368)
                      -..|++++.++..++++|+.++|+++.
T Consensus       330 Gr~Gy~~ll~e~~ela~~L~~~L~~la  356 (501)
T 3hl2_A          330 GSNGYKKLLKERKEMFSYLSNQIKKLS  356 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777899999999999999999999864

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.61  E-value=7e-20  Score=175.83  Aligned_cols=246  Identities=15%  Similarity=0.114  Sum_probs=167.2

Q ss_pred             CCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCC
Q 017640           77 SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKS  156 (368)
Q Consensus        77 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~  156 (368)
                      |+.+|.|.+++.+.+.....       .  ....+...++.+.|+++++ .. +.++|++|+++|+..+++.++  ....
T Consensus       115 Gh~~p~V~~Av~~q~~~~~~-------~--~~~~~~~~~Lae~L~~~~p-~~-~~v~~~nSGseA~~~Aik~ar--~~tg  181 (465)
T 2yky_A          115 GHSHPVIRAAVERALAVGLN-------L--STQTENEALFAEAVCDRFP-SI-DLVRFTNSGTEANLMALATAT--AITG  181 (465)
Confidence            45689999999888765211       0  1124556689999999995 22 389999999999999998652  1356


Q ss_pred             CCEEEEcCCCCcccHHHHHHHHHHcCC--EEEEEeCCCCCCCCHHHHHHhcc---cCceEEEEcccccccccccC----H
Q 017640          157 GDEVILTVAEHHSAIVPWQLVAQKTGA--NLKFLNLNDDESPDLDKLKEMLS---RKTKLVVIHHISNMLASILP----I  227 (368)
Q Consensus       157 gd~vl~~~~~~~s~~~~~~~~~~~~g~--~v~~v~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~~----l  227 (368)
                      ++.|++.++.|++.......-....|.  .+..++.+     |+++|+++++   +++++|+++.+++++|.+.|    +
T Consensus       182 r~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~~-----d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l  256 (465)
T 2yky_A          182 RKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVYN-----DVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFL  256 (465)
Confidence            689999999998755432210011233  33344432     7899999997   57899999888888998887    9


Q ss_pred             HHHHHHHHhcCCEEEEecCCcCCccc--ccCC--CCCccEEEecCcCcCCCCc--ceEEEEcccccccCCCcccCCccee
Q 017640          228 EEIVHWSHDVGAKVLVDACQSVPHMV--VDVQ--GLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMIS  301 (368)
Q Consensus       228 ~~i~~l~~~~g~~li~D~a~~~~~~~--~~~~--~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~~~~~g~~~~~  301 (368)
                      ++|.++|++||+++|+|++|+ +...  ...+  ...+|++  +++|.+|+ |  +|++++++++++.+.+...|...  
T Consensus       257 ~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~gv~pDi~--t~sK~lg~-G~piG~v~~~~~i~~~l~~~~~g~~~--  330 (465)
T 2yky_A          257 DLLRAEASRCGALLIFDEVMT-SRLSGGGAQEMLGISADLT--TLGKYIGG-GMSFGAFGGRRDLMERFDPARDGAFA--  330 (465)
Confidence            999999999999999999999 4321  1111  2235654  67898876 5  89999999998887762111000  


Q ss_pred             ecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          302 DVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                                    .....+.|..+.++..++++.+++.   .+.++..++.+++.+.|.+.
T Consensus       331 --------------~~~T~~~npla~aAa~aaL~~l~~~---~~~~~~~~~~~~l~~~L~~~  375 (465)
T 2yky_A          331 --------------HAGTFNNNILTMSAGHAALTQIYTR---QAASDLSASGDRFRANLNRI  375 (465)
Confidence                          0011144556666777778877663   45667777777777766554

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.68  E-value=4.3e-16  Score=148.60  Aligned_cols=255  Identities=13%  Similarity=0.127  Sum_probs=171.6

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++--|+|..+      .|+.+|.|.+++.+++.....   .+.+      .....++.+.|++.+..-  +.|.|++++|
T Consensus        85 dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~~---~~~~------~~~~~~lae~l~~~~p~~--~~v~f~~SGs  153 (454)
T 4ao9_A           85 DGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGIN---LTGH------NLLEGRLARLICERFPQI--EQLRFTNSGT  153 (454)
T ss_dssp             TCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCSC---CCSE------ESSHHHHHHHHHHHSTTC--SEEEEESSHH
T ss_pred             CCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCCC---ccCC------cHHHHHHHHHHHHhCCCC--CEEEEeCchH
Confidence            4556787642      457899999999998875321   1111      112336778888888632  4899999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHH--HHcCCEEEEEeCCCCCCCCHHHHHHhccc---CceEEEE
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVA--QKTGANLKFLNLNDDESPDLDKLKEMLSR---KTKLVVI  214 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~--~~~g~~v~~v~~~~~~~~d~~~l~~~l~~---~~~~v~~  214 (368)
                      +|++.+++..+.  ...+++|+..+.+|++.........  .........+|.+     |++.+++.++.   ++.+|++
T Consensus       154 EA~e~AiklAr~--~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~n-----d~~~l~~~l~~~~~~iAavIv  226 (454)
T 4ao9_A          154 EANLMALTAALH--FTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYN-----DAQTARAQIERHGPEIAVVLV  226 (454)
T ss_dssp             HHHHHHHHHHHH--HHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTT-----CHHHHHHHHHHTGGGEEEEEE
T ss_pred             HHHHHHHHHHHh--cccCCeEEEEeCCcCCccccccccccCccCCCCcccCCCc-----hHHHHHHHHhhcCCceEEEEe
Confidence            999999987632  3456789999988887432211100  0011234455544     88999888864   5789999


Q ss_pred             cccccccccccC----HHHHHHHHHhcCCEEEEecCCcCCccc----ccCCCCCccEEEecCcCcCC-CCcceEEEEccc
Q 017640          215 HHISNMLASILP----IEEIVHWSHDVGAKVLVDACQSVPHMV----VDVQGLDADFLVASSHKMCG-PTGIGFLFGKSD  285 (368)
Q Consensus       215 ~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~~~~~~----~~~~~~~~d~~~~s~~K~~g-~~G~G~l~~~~~  285 (368)
                      +.+....|.+.|    +++|.++|++||+++|+||++. |..-    .+.....+|+++.+  |.+| +..+|.+.++++
T Consensus       227 EPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~t-GR~G~~~a~e~~gv~PDi~t~g--K~lggG~Piga~~~~~e  303 (454)
T 4ao9_A          227 EPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMT-SRLAPHGLANKLGIRSDLTTLG--KYIGGGMSFGAFGGRAD  303 (454)
T ss_dssp             CSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTG-GGGSTTCHHHHHTCCCSEEEEE--GGGGTTSSCEEEEECHH
T ss_pred             ccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCc-CCCccccchhccCCCCcEEEec--cccCCCCcceeeeeHHH
Confidence            999999999988    9999999999999999999997 4221    11123458998776  8544 334899999999


Q ss_pred             ccccCCCcccCCcceeecccCCCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          286 LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAG--TPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       286 li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--t~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +++.+.+....                   .+..+  +.|..+.++..++|+.+++   +.+.+++.++.+++.+.|+++
T Consensus       304 i~~~~~~~~~~-------------------~~h~~T~~gnPla~AAala~L~~l~~---~~~~~~~~~~g~~l~~~L~~l  361 (454)
T 4ao9_A          304 VMALFDPRTGP-------------------LAHSGTFNNNVMTMAAGYAGLTKLFT---PEAAGALAERGEALRARLNAL  361 (454)
T ss_dssp             HHGGGCTTTCS-------------------CCCCCTTTTCHHHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhccCC-------------------ccccCCCCCCHHHHHHHHHHHHHHhc---cChhHHHHHHHHHHHHHHHHH
Confidence            98877643210                   01122  3455566666666666654   556777778888888777654

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=99.66  E-value=1.8e-14  Score=137.94  Aligned_cols=263  Identities=16%  Similarity=0.177  Sum_probs=174.8

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++--|||..      ..|+.+|.+.+++++.+..+........      ..+...++.+.|++++..+..+.++|+++++
T Consensus        62 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~------~~~~~~~lae~L~~~~p~~~~~~v~f~~sGs  135 (456)
T 4atq_A           62 DGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTHTCFMVT------PYEGYVAVTEQLNRLTPGDHAKRTVLFNSGA  135 (456)
T ss_dssp             TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCTTTTS------CCHHHHHHHHHHHHHSSCSSCEEEEEESSHH
T ss_pred             CCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhccCcccCcc------CcHHHHHHHHHHHHhCCCCCCcEEEEeCChH
Confidence            455688864      3567899999999998887532211100      1233346778888888754334789999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHH----------cCCEEEEEeCCCC------CCCCHHHHHH
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK----------TGANLKFLNLNDD------ESPDLDKLKE  203 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~----------~g~~v~~v~~~~~------~~~d~~~l~~  203 (368)
                      +|++.+++..+.  ...++.|+....+||+...........          ....+..+|....      ...+.+.+++
T Consensus       136 EA~e~AlklAr~--~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  213 (456)
T 4atq_A          136 EAVENAVKVARL--ATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKR  213 (456)
T ss_dssp             HHHHHHHHHHHH--HHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHH
T ss_pred             HHHHHHHHHHhh--hhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHH
Confidence            999999987532  345678999999999876543332110          0123455554311      1112333332


Q ss_pred             -------hcc-cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCcC-Ccc----cccCCCCCccEEEe
Q 017640          204 -------MLS-RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQSV-PHM----VVDVQGLDADFLVA  266 (368)
Q Consensus       204 -------~l~-~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~~-~~~----~~~~~~~~~d~~~~  266 (368)
                             .+. .++.+|+++.++...|.+.|    +++|.++|++||+++|+||++.- |..    ..+.....+|+++.
T Consensus       214 ~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~  293 (456)
T 4atq_A          214 AITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITM  293 (456)
T ss_dssp             HHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEE
T ss_pred             HHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCCCCchhhh
Confidence                   222 25789999999999998877    99999999999999999999872 322    12223346999988


Q ss_pred             cCcCcCC-CCcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 017640          267 SSHKMCG-PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI  345 (368)
Q Consensus       267 s~~K~~g-~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i  345 (368)
                      +  |.+| ...+|.+++++++.+.+.+...++++                     +.|..+.++..++|+.+++.+   +
T Consensus       294 g--K~lggg~P~~av~~~~~i~~~~~~~~~~~Tf---------------------~gnpla~aaala~L~~i~~~~---l  347 (456)
T 4atq_A          294 A--KGIAGGLPLSAITGRADLLDAVHPGGLGGTY---------------------GGNPVACAAALAAIDTMEQHD---L  347 (456)
T ss_dssp             C--GGGGTTSSCEEEEEEHHHHTTSCTTSSCCSS---------------------SSCHHHHHHHHHHHHHHHHTT---H
T ss_pred             h--hcccCcCCceeeEecHHHHhcccccCCCCCC---------------------CCChHHHHhhHHHHHHHhhcc---H
Confidence            7  8544 33389999999988877765443322                     567778888888899888754   4


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 017640          346 HAYEVKWIICSIIVIQE  362 (368)
Q Consensus       346 ~~~~~~l~~~l~~~l~~  362 (368)
                      .++.+++.+++.+.|++
T Consensus       348 ~~~~~~~g~~l~~~L~~  364 (456)
T 4atq_A          348 NGRARHIEELALGKLRE  364 (456)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            45566666666665554

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=99.66  E-value=4e-15  Score=138.57  Aligned_cols=279  Identities=14%  Similarity=0.100  Sum_probs=169.3

Q ss_pred             EEeccCCCCCCcHHHHHHHHHHHHHhh--ccCCCCcchhhHHH-HHHHHHHHHHHHHHcCCCCCCc-E-EEeCCHHHHHH
Q 017640           69 VYLDNAATSQKPIAVLKALQNYYEAYN--SNVHRGIHFLSAKA-TDEYELARKKVAAFINASDSGE-I-VFTKNATEAIN  143 (368)
Q Consensus        69 i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~r~~la~~~~~~~~~~-v-~~t~g~t~a~~  143 (368)
                      +.|=... ...++.|.+++...+..-+  ++|.. .++.|-.. .+...-.+++..++||++..+. | |-..|++.|+.
T Consensus        57 ieLIASE-N~~S~aV~~a~gS~ltnKYaEGyPg~-RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~  134 (490)
T 3ou5_A           57 LELIASE-NFCSRAALEALGSCLNNKYSEGYPGK-RYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANL  134 (490)
T ss_dssp             EECCTTC-CCCCHHHHHHHTSGGGTCCCCC-----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHH
T ss_pred             ceEecCC-CcCCHHHHHHhcCcccccccCCCCCc-cccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHH
Confidence            4444333 4678899999877766522  23322 23333333 3444557788999999986532 2 33357778999


Q ss_pred             HHHHHccCCCCCCCCEEEEcCCCCcccHHHHH----HHHHHcCC--EEEEEeCC-CCCCCCHHHHHHhccc-CceEEEEc
Q 017640          144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQ----LVAQKTGA--NLKFLNLN-DDESPDLDKLKEMLSR-KTKLVVIH  215 (368)
Q Consensus       144 ~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~----~~~~~~g~--~v~~v~~~-~~~~~d~~~l~~~l~~-~~~~v~~~  215 (368)
                      .+..++    ++|||+|+..+..|.+...--.    .-....|.  +...++++ +++.||.+.+++.... +|++|++.
T Consensus       135 avy~Al----l~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPklIi~G  210 (490)
T 3ou5_A          135 AVYTAL----LQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAG  210 (490)
T ss_dssp             HHHHHH----CC-CCCEECBC----------------------------CBCEETTTTEECHHHHHHHHHHHCCSEEEEC
T ss_pred             HHHHHH----cCCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhhcCCCeEEEC
Confidence            999999    9999999998887776542110    01111232  23334444 4588999999987754 89999988


Q ss_pred             ccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcc-----cccCCCCCccEEEecCcCcC-CCCcceEEEEccccccc
Q 017640          216 HISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM-----VVDVQGLDADFLVASSHKMC-GPTGIGFLFGKSDLLSA  289 (368)
Q Consensus       216 ~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~-----~~~~~~~~~d~~~~s~~K~~-g~~G~G~l~~~~~li~~  289 (368)
                      ...+|  ..+|++++.++|++.|.++++|.+|-.|-+     +-.++  .+|++++|.||.+ ||.| |+++++++....
T Consensus       211 ~SaY~--r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~--~ADvVTtTTHKTLrGPrG-G~Il~~~~~~~~  285 (490)
T 3ou5_A          211 TSAYA--RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLRGARS-GLIFYRKGVKAV  285 (490)
T ss_dssp             CSSCC--SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSSTTCSCSC-EEEEEECSEEEE
T ss_pred             CccCc--cccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCccc--cceEEeccccccccCCCc-eEEEeccccccc
Confidence            87766  578899999999999999999999985433     22222  4899999999955 6665 999998854211


Q ss_pred             CCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          290 MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       290 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      -... .  ......+.  ......-.--..|.|....++|.+.++....+...+...+++.++++.+.+.|.+.
T Consensus       286 ~~k~-~--~~~~~~~~--kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~  354 (490)
T 3ou5_A          286 DPKT-G--REIPYTFE--DRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER  354 (490)
T ss_dssp             CC---C--CEEECCCH--HHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccc-c--chhHHHHH--HHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhC
Confidence            0000 0  00000000  00000000012467888899999988887655556778888899999999988875

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=99.57  E-value=9.9e-14  Score=133.31  Aligned_cols=266  Identities=12%  Similarity=0.079  Sum_probs=171.2

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|||..+      .|...|.+.+++.+.+..+....   .....  ..+...++.++|++....+-+ .|.|++|++
T Consensus        65 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~---~~~~~--~~~~~~~lAe~L~~~~p~~~~-~v~f~~sGs  138 (473)
T 4e3q_A           65 NGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYH---AFFGR--MSDQTVMLSEKLVEVSPFDSG-RVFYTNSGS  138 (473)
T ss_dssp             TCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCC---CCTTE--EEHHHHHHHHHHHHHSSCSSC-EEEEESSHH
T ss_pred             CCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhccccc---ccccc--cCHHHHHHHHHHHhhCCCCcc-EEEEeCchH
Confidence            4556888643      45779999999999988753211   11100  122333678888888876543 899999999


Q ss_pred             HHHHHHHHHccCC---C-CCCCCEEEEcCCCCcccHHHHHHHHH-----HcC---CEEEEEeCC------CCCCC-----
Q 017640          140 EAINLVAYSWGLS---N-LKSGDEVILTVAEHHSAIVPWQLVAQ-----KTG---ANLKFLNLN------DDESP-----  196 (368)
Q Consensus       140 ~a~~~~~~~~~~~---~-~~~gd~vl~~~~~~~s~~~~~~~~~~-----~~g---~~v~~v~~~------~~~~~-----  196 (368)
                      +|++.+++.....   . -....+|+....+||+..........     ..+   .....++..      ..+..     
T Consensus       139 EA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  218 (473)
T 4e3q_A          139 EANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFV  218 (473)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHHH
Confidence            9999999864211   1 12345788889999986543333211     011   112333322      11111     


Q ss_pred             --CHHHHHHhcc----cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCc
Q 017640          197 --DLDKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDA  261 (368)
Q Consensus       197 --d~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~  261 (368)
                        ..+++++.+.    +++.+|+++.++...|.+.|    +++|.++|++||+++|+||++. +|..    ..+.....+
T Consensus       219 ~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~P  298 (473)
T 4e3q_A          219 ARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTP  298 (473)
T ss_dssp             HHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCC
T ss_pred             HHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchhHHHhcCCCC
Confidence              1233444443    35689999999999998887    9999999999999999999987 3332    112233469


Q ss_pred             cEEEecCcCcCCC--CcceEEEEcccccccCCC-------cccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 017640          262 DFLVASSHKMCGP--TGIGFLFGKSDLLSAMPP-------FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGA  332 (368)
Q Consensus       262 d~~~~s~~K~~g~--~G~G~l~~~~~li~~l~~-------~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~  332 (368)
                      |+++.+  |.++.  ..+|.+++++++.+.+.+       ...|++                     .+-|..+.++..+
T Consensus       299 Di~t~~--K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T---------------------~~Gnpla~Aaala  355 (473)
T 4e3q_A          299 DAIISS--KNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFT---------------------ASGHPVGCAIALK  355 (473)
T ss_dssp             SEEEEC--GGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCT---------------------TTTCHHHHHHHHH
T ss_pred             ChHHhc--ccccCCCCCcccccccHHHHHHhccccccccccccCCC---------------------CCCCcchhhhhhh
Confidence            999877  95543  338999999988765432       222211                     1556677777778


Q ss_pred             HHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          333 AIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       333 al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +++.+++.   .+.++++++.+++.+.|+++
T Consensus       356 ~L~~i~~~---~l~~~~~~~g~~l~~~L~~l  383 (473)
T 4e3q_A          356 AIDVVMNE---GLAENVRRLAPRFEERLKHI  383 (473)
T ss_dssp             HHHHHHHS---SHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccc---cHHHHHHHHHHHHHHHHHHH
Confidence            88888774   45566777777777777654

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=99.27  E-value=1.4e-10  Score=118.59  Aligned_cols=249  Identities=10%  Similarity=0.050  Sum_probs=155.0

Q ss_pred             EEeccCC------CCCC-cHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHH
Q 017640           69 VYLDNAA------TSQK-PIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEA  141 (368)
Q Consensus        69 i~l~~~~------~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a  141 (368)
                      -|||..+      .|+. .|.+.+++.+++..+......+.      ..+...++.++|+++++.+.-+.|+|++|+++|
T Consensus       381 ~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~h~~~~~~------~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA  454 (831)
T 4a0g_A          381 QQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFPEN------VYEPALKCAELLLDGVGKGWASRVYFSDNGSTA  454 (831)
T ss_dssp             EEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHSSCCCTTE------ECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHH
T ss_pred             heeeecccHhhcCCCCCCCHHHHHHHHHHHhhccccccccc------CCHHHHHHHHHHHHhCCCCCCCEEEECCChhHH
Confidence            4777643      4566 89999999999887643211111      123334788999999875422489999999999


Q ss_pred             HHHHHHHc-cCCCCC------------CCCEEEEcCCCCcccHHHHHHHHHH---c---------CCEE-----------
Q 017640          142 INLVAYSW-GLSNLK------------SGDEVILTVAEHHSAIVPWQLVAQK---T---------GANL-----------  185 (368)
Q Consensus       142 ~~~~~~~~-~~~~~~------------~gd~vl~~~~~~~s~~~~~~~~~~~---~---------g~~v-----------  185 (368)
                      ++.+++.. +.....            ...+|+.....||+.......+...   .         +..+           
T Consensus       455 ~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  534 (831)
T 4a0g_A          455 IEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSN  534 (831)
T ss_dssp             HHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEET
T ss_pred             HHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccccccC
Confidence            99998865 111011            1346888888888765444333210   0         1000           


Q ss_pred             --EEEeCCCCCC---------CC------------------HHHHHHhcc--------cCceEEEEccc-ccccccccC-
Q 017640          186 --KFLNLNDDES---------PD------------------LDKLKEMLS--------RKTKLVVIHHI-SNMLASILP-  226 (368)
Q Consensus       186 --~~v~~~~~~~---------~d------------------~~~l~~~l~--------~~~~~v~~~~~-~n~tG~~~~-  226 (368)
                        ..++......         -|                  .+.|++.|+        .++++|+++.. ++..|.+.+ 
T Consensus       535 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~  614 (831)
T 4a0g_A          535 GSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVD  614 (831)
T ss_dssp             TEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEEC
T ss_pred             CceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCC
Confidence              1122221100         01                  256777775        24689999996 898898876 


Q ss_pred             ---HHHHHHHHHhcCCEEEEecCCc-CCccc--c--cCCCCCccEEEecCcCcCCCC--cceEEEEcccccccCCCcccC
Q 017640          227 ---IEEIVHWSHDVGAKVLVDACQS-VPHMV--V--DVQGLDADFLVASSHKMCGPT--GIGFLFGKSDLLSAMPPFLGG  296 (368)
Q Consensus       227 ---l~~i~~l~~~~g~~li~D~a~~-~~~~~--~--~~~~~~~d~~~~s~~K~~g~~--G~G~l~~~~~li~~l~~~~~g  296 (368)
                         +++|.++|++||+++|+||++. +|..-  +  +.....+|+++  ++|.+|..  .+|++++++++++.+.+....
T Consensus       615 ~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDiit--lsK~L~gG~~Plgav~~~~~i~~~~~~~~~~  692 (831)
T 4a0g_A          615 PLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIAC--FAKLLTGGMVPLAVTLATDAVFDSFSGDSKL  692 (831)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCCSEEE--ECGGGGTTSSCCEEEEECHHHHHTTCSSCGG
T ss_pred             HHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCCcEEE--EecccccCccCcEEEEECHHHHHHHhccccc
Confidence               8999999999999999999987 43321  1  11223588876  55976542  379999999988877642100


Q ss_pred             CcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 017640          297 GEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI  340 (368)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~  340 (368)
                      ...     .         .. ...+.+..+.+++.++++.+++.
T Consensus       693 ~~~-----~---------hg-~T~~g~Pla~Aaala~L~~i~~~  721 (831)
T 4a0g_A          693 KAL-----L---------HG-HSYSAHAMGCATAAKAIQWFKDP  721 (831)
T ss_dssp             GSC-----C---------CC-CTTTTCHHHHHHHHHHHHHHHCT
T ss_pred             ccc-----e---------ee-cCCcccHHHHHHHHHHHHHHHhh
Confidence            000     0         00 11256777777888888888754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	368
d1jf9a_	405	c.67.1.3 (A:) NifS-like protein/selenocysteine lya	3e-83
d1t3ia_	408	c.67.1.3 (A:) Probable cysteine desulfurase SufS {	5e-83
d1p3wa_	391	c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich	5e-61
d1eg5a_	376	c.67.1.3 (A:) NifS-like protein/selenocysteine lya	6e-50
d1qz9a_	404	c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescen	4e-43
d1elua_	381	c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocyst	3e-23
d1bjna_	360	c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT	6e-21
d1w23a_	360	c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT	4e-19
d1c4ka2	462	c.67.1.5 (A:108-569) Ornithine decarboxylase major	2e-17
d2bkwa1	382	c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransfe	4e-17
d2ch1a1	388	c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminas	4e-16
d1vjoa_	377	c.67.1.3 (A:) Alanine-glyoxylate aminotransferase	6e-16
d1m32a_	361	c.67.1.3 (A:) 2-aminoethylphosphonate transaminase	1e-15
d2c0ra1	361	c.67.1.4 (A:2-362) Phosphoserine aminotransferase,	5e-15
d1h0ca_	388	c.67.1.3 (A:) Alanine-glyoxylate aminotransferase	2e-12
d3bc8a1	445	c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase	2e-09
d2aeua1	366	c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Ar	1e-07
d1svva_	340	c.67.1.1 (A:) Low-specificity threonine aldolase {	1e-06
d2z67a1	434	c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (	1e-06
d1j32a_	388	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho	4e-06
d1gdea_	388	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	1e-05
d1b5pa_	382	c.67.1.1 (A:) Aspartate aminotransferase, AAT {The	0.001

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} Length = 405

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

 Score =  257 bits (656), Expect = 3e-83
 Identities = 145/298 (48%), Positives = 198/298 (66%), Gaps = 2/298 (0%)

Query: 52  RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
           R DFP+L +EV G   L YLD+AA++QKP  V+ A   +Y    + VHRGIH LSA+AT+
Sbjct: 8   RADFPVLSREVNG-LPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATE 66

Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
           + E  RK+ + FINA  + E+VF +  TE INLVA SWG SN+++GD +I++  EHH+ I
Sbjct: 67  KMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANI 126

Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
           VPWQ++  + GA L+ + LN D +  L+ L  +   KT+L+ I H+SN+L +  P+ E++
Sbjct: 127 VPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMI 186

Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
             +H  GAKVLVD  Q+V H  VDVQ LD DF V S HK+ GPTGIG L+ K  LL  MP
Sbjct: 187 TLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMP 246

Query: 292 PFLGGGEMISDV-FLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAY 348
           P+ GGG MI+ V   + +T+   P RFEAGTP  G  IGLGAA++Y+S +G+  I  Y
Sbjct: 247 PWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEY 304

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} Length = 408

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

 Score =  256 bits (655), Expect = 5e-83
 Identities = 196/304 (64%), Positives = 233/304 (76%), Gaps = 1/304 (0%)

Query: 52  RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
           R DFPIL+QE+ G   LVYLDNAATSQKP AVL+ L +YYE  N+NVHRG H LS +ATD
Sbjct: 8   RQDFPILNQEING-HPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATD 66

Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
            YE  R KVA FINA    EIV+T+NATEAINLVAYSWG++NLK+GDE+I TV EHHS +
Sbjct: 67  AYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNL 126

Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
           VPWQ+VA KTGA LKF+ L++ ES DL+  K +LS KTKLV + HISN L  + P EEI 
Sbjct: 127 VPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIA 186

Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
             +H  GAKVLVDACQS PH  +DVQ +D D+LVAS HKMC PTGIGFL+GK ++L AMP
Sbjct: 187 QLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEEILEAMP 246

Query: 292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVK 351
           PF GGGEMI++VF DH T  + P +FEAGTPAI EAI LGAA+DYL+ +GM+ IH YEV+
Sbjct: 247 PFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVE 306

Query: 352 WIIC 355
               
Sbjct: 307 LTHY 310

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

 Score =  199 bits (505), Expect = 5e-61
 Identities = 70/290 (24%), Positives = 114/290 (39%), Gaps = 4/290 (1%)

Query: 69  VYLDNAATSQKPIAVLKALQNYYEAYNS--NVHRGIHFLSAKATDEYELARKKVAAFINA 126
           +YLD +AT+     V + +  +     +  N     H    +A +  ++AR ++A  + A
Sbjct: 4   IYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGA 63

Query: 127 SDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLK 186
            D  EIVFT  ATE+ NL          K G  +I +    H A++      ++ G  + 
Sbjct: 64  -DPREIVFTSGATESDNLAIKGAANFYQKKGKHIITS-KTEHKAVLDTCRQLEREGFEVT 121

Query: 187 FLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDAC 246
           +L    +   DL +L+  +   T LV I H++N +  +  I  I       G    VDA 
Sbjct: 122 YLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDAT 181

Query: 247 QSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLD 306
           QSV  + +D+  L  D +  S HK+ GP GIG L+ +      +   + GG     +   
Sbjct: 182 QSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSG 241

Query: 307 HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICS 356
                      EA   A  E       +  L       I   E  ++   
Sbjct: 242 TLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGD 291

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} Length = 376

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

 Score =  169 bits (429), Expect = 6e-50
 Identities = 63/253 (24%), Positives = 114/253 (45%), Gaps = 7/253 (2%)

Query: 69  VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD 128
           VY DN AT++    VL+ +  +Y     N +   H +  +A    E AR+KVA  +    
Sbjct: 3   VYFDNNATTRVDDRVLEEMIVFYREKYGNPN-SAHGMGIEANLHMEKAREKVAKVLGV-S 60

Query: 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188
             EI FT  ATE+IN +  +   +  K    +I T  EH + +   + ++ K G  +K++
Sbjct: 61  PSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMK-GFKVKYV 119

Query: 189 NLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIE--EIVHWSHDVGAKVLVDAC 246
            ++      L++L++++   T LV I   +N + +I P+E    +    +    V VDA 
Sbjct: 120 PVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAV 179

Query: 247 QSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLD 306
           Q++  +   ++ L+ D+   S+HK  GP G+G  + +      + P + GG     +   
Sbjct: 180 QTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKG--VPIRPLIHGGGQERGLRSG 237

Query: 307 HSTFADPPSRFEA 319
                       A
Sbjct: 238 TQNVPGIVGAARA 250

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

 Score =  152 bits (384), Expect = 4e-43
 Identities = 54/308 (17%), Positives = 107/308 (34%), Gaps = 15/308 (4%)

Query: 52  RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
           R  F +        + ++YLD  +   +P+A L   Q        N        SA   D
Sbjct: 19  RQQFALP-------EGVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIRSWN-SAGWRD 70

Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
             E    ++A  I A   GE+V T   +  +  V  +          E  + V    ++ 
Sbjct: 71  LSERLGNRLATLIGA-RDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIV--TETSN 127

Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
            P  L   +  A++             ++L + + + T +V++ H++     +  ++ + 
Sbjct: 128 FPTDLYIAEGLADMLQQGYTLRLVDSPEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALT 187

Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKM--CGPTGIGFLFGKSDLLSA 289
             SH+ GA  + D   S   + VD+    AD+ +  ++K    GP    F++    L   
Sbjct: 188 ALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDL 247

Query: 290 MPP--FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHA 347
           +P       G             ++  +R+  GT  I     +   +D  +   M  +  
Sbjct: 248 VPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRR 307

Query: 348 YEVKWIIC 355
             +     
Sbjct: 308 KSLALTDL 315

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} Length = 381

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

 Score = 97.7 bits (241), Expect = 3e-23
 Identities = 58/319 (18%), Positives = 99/319 (31%), Gaps = 20/319 (6%)

Query: 55  FPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYE 114
           FP L           Y +       P   L+A+   Y     N        +        
Sbjct: 2   FPGL-------ANKTYFNFGGQGILPTVALEAITAMYGYLQENGPFS-IAANQHIQQLIA 53

Query: 115 LARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPW 174
             R+ +A   N  D   I  T N T   ++V +     +   GDE++LT  EH   I   
Sbjct: 54  QLRQALAETFNV-DPNTITITDNVTTGCDIVLWGL---DWHQGDEILLTDCEHPGIIAIV 109

Query: 175 QLVAQKTGANLKFLNLNDDESPDLDKL------KEMLSRKTKLVVIHHISNMLASILPIE 228
           Q +A + G   +F  +    +                       ++ +   +L     + 
Sbjct: 110 QAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMA 169

Query: 229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGF-LFGKSDLL 287
                  +   +VLVD  QS   + +D   L+ D+   + HK          L+   D L
Sbjct: 170 VCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCL 229

Query: 288 SAMPPFLGGGEM-ISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIH 346
             + P   G          + + +A+   RFE  T A  +  GL AA+      G  +  
Sbjct: 230 GEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEER 289

Query: 347 AYEVKWIICSIIVIQERHN 365
              +      +     +  
Sbjct: 290 YQAICQRSEFLWRGLNQLP 308

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} Length = 360

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

 Score = 90.6 bits (223), Expect = 6e-21
 Identities = 40/252 (15%), Positives = 74/252 (29%), Gaps = 13/252 (5%)

Query: 69  VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLS---AKATDEYELARKKVAAFIN 125
           ++  ++  +  P  VLK  Q     +N  +   +  +S    +     E A K     +N
Sbjct: 2   IFNFSSGPAMLPAEVLKQAQQELRDWN-GLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLN 60

Query: 126 ASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANL 185
              + +++F                      GD+      +           A+K     
Sbjct: 61  VPSNYKVLFCHGGGRGQFAAVPLNI-----LGDKTTADYVDAGYWAASAIKEAKKYCTPN 115

Query: 186 KFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDA 245
            F      +     K             +H+  N     + I+E   +  DV     V A
Sbjct: 116 VFDAKVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDETPDFGADVV----VAA 171

Query: 246 CQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFL 305
             S   +   +       + A + K  GP G+  +  + DLL             S +  
Sbjct: 172 DFSSTILSRPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILND 231

Query: 306 DHSTFADPPSRF 317
           + S F  PP+  
Sbjct: 232 NGSMFNTPPTFA 243

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} Length = 360

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

 Score = 85.1 bits (209), Expect = 4e-19
 Identities = 31/247 (12%), Positives = 71/247 (28%), Gaps = 15/247 (6%)

Query: 67  KLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLS---AKATDEYELARKKVAAF 123
           K V+  NA  S  P   L+  Q     +N +    +  LS       + +E A+  +   
Sbjct: 2   KQVFNFNAGPSALPKPALERAQKELLNFN-DTQMSVMELSHRSQSYEEVHEQAQNLLREL 60

Query: 124 INASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGA 183
           +   +  +I+F +        +     L+    G+ V+       +      L      A
Sbjct: 61  LQIPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAA 120

Query: 184 NLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLV 243
           + K  +                S         ++     + +   +  ++     A ++ 
Sbjct: 121 STKANSYQSI---------PDFSEFQLNENDAYLHITSNNTIYGTQYQNFPEINHAPLIA 171

Query: 244 DACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDV 303
           D    +    + V      +  A  +       +  +  K DLL+     +      +  
Sbjct: 172 DMSSDILSRPLKVNQFGMIYAGAQKNLGPSG--VTVVIVKKDLLNTKVEQVPTMLQYATH 229

Query: 304 FLDHSTF 310
               S +
Sbjct: 230 IKSDSLY 236

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} Length = 462

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

 Score = 80.8 bits (198), Expect = 2e-17
 Identities = 36/269 (13%), Positives = 65/269 (24%), Gaps = 47/269 (17%)

Query: 116 ARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQ 175
           A K  A   NA    +  F    +   N    S   + + +GD V+     H S      
Sbjct: 71  AEKHAARVYNAD---KTYFVLGGSSNANNTVTS---ALVSNGDLVLFDRNNHKSVYNSAL 124

Query: 176 LVAQKTGANLKFLNLNDD------ESPDLD-----------KLKEMLSRKTKLVVIHHIS 218
            +A          N N           D D             +    ++   + +  + 
Sbjct: 125 AMAGG-RPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG 183

Query: 219 NMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLD-------------ADFLV 265
               +I    E+V     +   +  D+        + +                    +V
Sbjct: 184 TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVV 243

Query: 266 ASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIG 325
            S HK            K D                  + DH  F +  + F + +P   
Sbjct: 244 QSVHKQQAGFSQTSQIHKKDSHIKGQLR----------YCDHKHFNNSFNLFMSTSPFYP 293

Query: 326 EAIGLGAAIDYLSTIGMQKIHAYEVKWII 354
               L            +K+    +   I
Sbjct: 294 MYAALDVNAAMQEGEAGRKLWHDLLITTI 322

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.8 bits (195), Expect = 4e-17
 Identities = 37/275 (13%), Positives = 74/275 (26%), Gaps = 16/275 (5%)

Query: 80  PIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139
             AV KAL           H    F  +      +  R    +   +  S   V   + T
Sbjct: 15  SGAVQKALDVPSLG-----HTSPEF-VSIFQRVLKNTRAVFKSAAAS-KSQPFVLAGSGT 67

Query: 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLD 199
              ++ A ++ + +      V++      S      L +     ++       +  P   
Sbjct: 68  LGWDIFASNF-ILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLEL 126

Query: 200 KLKEMLSRKTKLVVIHHISNMLASILP--IEEIVHWSHDVGAKVLVDACQSVPHMVVDVQ 257
             +++       V + H+    A +                   +VDA  S+     +  
Sbjct: 127 ITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFD 186

Query: 258 GLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVF-----LDHSTFA 311
               DF + +S K +  P G+      S  +         G +                 
Sbjct: 187 EWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENY 246

Query: 312 DPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIH 346
           +        TP +     L  A+  +   G+ K  
Sbjct: 247 EAGKGAYFATPPVQLINSLDVALKEILEEGLHKRW 281

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

 Score = 76.6 bits (187), Expect = 4e-16
 Identities = 33/279 (11%), Positives = 77/279 (27%), Gaps = 15/279 (5%)

Query: 77  SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTK 136
           S     VL A+ N            +    A+     +  +  +       +   +  + 
Sbjct: 26  SNCSKRVLTAMTNTV----------LSNFHAELFRTMDEVKDGLRYIFQTENRATMCVSG 75

Query: 137 NATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESP 196
           +A   +  +     LSNL    + +L       A    ++  +            D    
Sbjct: 76  SAHAGMEAM-----LSNLLEEGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPDRPFS 130

Query: 197 DLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDV 256
                + +   + K + + H  +    + P+E +    H     ++VDA  S+  +   +
Sbjct: 131 LETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYM 190

Query: 257 QGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSR 316
              + D +   + K+ G          S     +         +    L           
Sbjct: 191 DKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYD 250

Query: 317 FEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIIC 355
                     +  + A  + L+ I  + +     + I C
Sbjct: 251 EPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIEC 289

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} Length = 377

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

 Score = 75.9 bits (185), Expect = 6e-16
 Identities = 26/268 (9%), Positives = 72/268 (26%), Gaps = 7/268 (2%)

Query: 102 IHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVI 161
           +  L        +  +  +       +   I  +   T A+        ++N     +V+
Sbjct: 42  VGHLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEAT-----IANAVEPGDVV 96

Query: 162 LTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNML 221
           L     +       +  +             +     +    + + +  ++ + H     
Sbjct: 97  LIGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETST 156

Query: 222 ASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH-KMCGPTGIGFL 280
            +  P+E +     + G  +LVD   S+  + + +     D   + S   +    G    
Sbjct: 157 GARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPF 216

Query: 281 FGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI 340
              S  +               + ++         R    T  I     L  A+  ++  
Sbjct: 217 TMSSRAI-EKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQE 275

Query: 341 GMQKIHAYEVKWIICSIIVIQERHNTTL 368
           G+        K +      +++   +  
Sbjct: 276 GLANCWQRHQKNVEYLWERLEDIGLSLH 303

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} Length = 361

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

 Score = 74.8 bits (182), Expect = 1e-15
 Identities = 42/272 (15%), Positives = 80/272 (29%), Gaps = 19/272 (6%)

Query: 80  PIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIV-FTKNA 138
              V +A+                +         E  R+++ A   AS+    V    + 
Sbjct: 12  SRTVKEAMLFDS----------CTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSG 61

Query: 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDL 198
           + A+  V  S     L   D+V++     + A +           +              
Sbjct: 62  SYAVEAVLGSA----LGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQA 117

Query: 199 DKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQG 258
                        + + H       + PI+E+   +H  G   +VDA  S   + +D+  
Sbjct: 118 IDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAA 177

Query: 259 LDADFLVASSHKMC-GPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRF 317
           L  D+L++S++K   G  G  F+  +   L+A         +                RF
Sbjct: 178 LHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRF 237

Query: 318 EAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYE 349
              T      +    A+  L+  G        
Sbjct: 238 ---TSPTHTVLAFAQALKELAKEGGVAARHQR 266

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} Length = 361

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

 Score = 73.2 bits (178), Expect = 5e-15
 Identities = 40/249 (16%), Positives = 84/249 (33%), Gaps = 15/249 (6%)

Query: 69  VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLS---AKATDEYELARKKVAAFIN 125
            Y  NA  +  P+ VL+  Q  +  Y  +    I  +S   A     +  A+ ++ A + 
Sbjct: 4   AYNFNAGPAALPLEVLERAQAEFVDYQ-HTGMSIMEMSHRGAVYEAVHNEAQARLLALLG 62

Query: 126 ASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANL 185
                +++F +        +     L   ++ + V+       S        A+  G   
Sbjct: 63  NPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVM-----TGSWASKALKEAKLIGDTH 117

Query: 186 KFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDA 245
              +        L KL+E+  +     + H  SN     +   +   +       ++ D 
Sbjct: 118 VAASSEASNYMTLPKLQEIQLQDNAAYL-HLTSNE---TIEGAQFKAFPDTGSVPLIGDM 173

Query: 246 CQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFL 305
              +     D+       + A + K  GP+G+  +  + DL++  P  L           
Sbjct: 174 SSDILSRPFDLN--QFGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDTYVK 231

Query: 306 DHSTFADPP 314
           ++S +  PP
Sbjct: 232 NNSLYNTPP 240

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.1 bits (157), Expect = 2e-12
 Identities = 33/291 (11%), Positives = 78/291 (26%), Gaps = 18/291 (6%)

Query: 77  SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTK 136
           S  P  ++ A               I  +S       +  ++ +       +   +V + 
Sbjct: 28  SNLPPRIMAAGGLQM----------IGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISG 77

Query: 137 NATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESP 196
           +   A+        L N+    +  L  A          +  +                 
Sbjct: 78  SGHCALEAA-----LVNVLEPGDSFLVGANGIWGQRAVDIGERIGARVHPMTKDPGGHYT 132

Query: 197 DLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDV 256
             +  + +   K  L+ + H  +    + P++      H     +LVD+  S+    + +
Sbjct: 133 LQEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYM 192

Query: 257 QGLDADFLVASS-HKMCGPTGIGFLFGKSDLLSAMPP--FLGGGEMISDVFLDHSTFADP 313
                D L + S   +  P G   +         M           +   +L +    D 
Sbjct: 193 DRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDD 252

Query: 314 PSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERH 364
             R    T  +     L  ++  ++  G++       +        +Q   
Sbjct: 253 QPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALG 303

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.1 bits (134), Expect = 2e-09
 Identities = 21/205 (10%), Positives = 41/205 (20%), Gaps = 14/205 (6%)

Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
              L    V                 AT     + +            +I    +  S  
Sbjct: 96  TNSLVLN-VIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCF 154

Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKE----MLSRKTKLVVIHHISNMLASILPI 227
                 A      ++ +   D+   DL  ++     +       +              +
Sbjct: 155 KSMVT-AGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRL 213

Query: 228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGL------DADFLVASSHK--MCGPTGIGF 279
           EE+     +     +V+    +                  D  V S  K  M    G   
Sbjct: 214 EELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAII 273

Query: 280 LFGKSDLLSAMPPFLGGGEMISDVF 304
                  +  +     G    S   
Sbjct: 274 AGFNEPFIQDISKMYPGRASASPSL 298

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 366

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 51.1 bits (121), Expect = 1e-07
 Identities = 14/146 (9%), Positives = 46/146 (31%), Gaps = 15/146 (10%)

Query: 114 ELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVP 173
           E   +     +   ++ + V     + AI        +  LK    +           + 
Sbjct: 53  EKVNEYGLKHLGGDENDKCVGFNRTSSAILAT-----ILALKPKKVIHYLPELPGHPSIE 107

Query: 174 WQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNM-LASILPIEEIVH 232
                     N K+   +      + ++   + + T +++     ++ +  +   +++++
Sbjct: 108 RSCKI----VNAKYFESDK-----VGEILNKIDKDTLVIITGSTMDLKVIELENFKKVIN 158

Query: 233 WSHDVGAKVLVDACQSVPHMVVDVQG 258
            + +  A V VD        ++  Q 
Sbjct: 159 TAKNKEAIVFVDDASGARVRLLFNQP 184

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} Length = 340

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

 Score = 47.6 bits (111), Expect = 1e-06
 Identities = 19/203 (9%), Positives = 48/203 (23%), Gaps = 12/203 (5%)

Query: 82  AVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEA 141
            +L  +                            A + +   +   D+ ++ F    T+ 
Sbjct: 15  KILDLMARDNM---------TQHAGYGQDSHCAKAARLIGELLERPDA-DVHFISGGTQT 64

Query: 142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKL 201
             +                +  ++ H +  +        T           D    L + 
Sbjct: 65  NLIACSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDGKLRVADIESALHEN 124

Query: 202 KEMLSRKTKLVVIHHISN--MLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGL 259
           +       KLV I + +      +   +E+I     + G  + +D  +    +   V  L
Sbjct: 125 RSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDL 184

Query: 260 DADFLVASSHKMCGPTGIGFLFG 282
               +   +              
Sbjct: 185 TLADIARLTDMFYIGATKAGGMF 207

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 48.0 bits (113), Expect = 1e-06
 Identities = 26/199 (13%), Positives = 59/199 (29%), Gaps = 18/199 (9%)

Query: 101 GIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEV 160
                ++ A+  Y L  K + +F               +  +++             + V
Sbjct: 100 DPQPKASGASIMYALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVV 159

Query: 161 ILTVAEHHSAIVPWQLVAQKTGANLKFLNL---NDDESPDLDKLKEMLSR-----KTKLV 212
           I   A H S I          G N++ +      D     ++ ++  + +         V
Sbjct: 160 IYPYASHKSPIK----AVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCV 215

Query: 213 VIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSV-----PHMVVDVQGLDADFLVAS 267
           +         +   I EI     +     +++   ++        +        D +V+S
Sbjct: 216 LSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSS 275

Query: 268 SHK-MCGPTGIGFLFGKSD 285
           S K +  P G G ++    
Sbjct: 276 SDKNLLTPIGGGLVYSTDA 294

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

 Score = 45.9 bits (108), Expect = 4e-06
 Identities = 40/228 (17%), Positives = 83/228 (36%), Gaps = 30/228 (13%)

Query: 80  PIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEY--ELARKKVAAFINASDSGEIVFTKN 137
           P  +++A +    A      R   +  A         +A+K          +  I+ T  
Sbjct: 45  PKHIVEAAK---AALEQGKTR---YGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNG 98

Query: 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDE-SP 196
             ++I  +  +     ++ GDEVI+      S     ++V    G  +      + +   
Sbjct: 99  GKQSIFNLMLAM----IEPGDEVIIPAPFWVSY---PEMVKLAEGTPVILPTTVETQFKV 151

Query: 197 DLDKLKEMLSRKTKLVVIHHISNMLASILPIEE------------IVHWSHDVGAKVLVD 244
             +++++ ++ KTKL+V +  SN    +   +E            +   S ++  K+L D
Sbjct: 152 SPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYD 211

Query: 245 ACQSVPHMVVDVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAM 290
             Q +       +  +   + +   K    TG  +GFL G   L+ A 
Sbjct: 212 DAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAA 259

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 44.4 bits (104), Expect = 1e-05
 Identities = 33/207 (15%), Positives = 68/207 (32%), Gaps = 23/207 (11%)

Query: 92  EAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGL 151
           E     + +G+              R+ +A  +   +  E          +         
Sbjct: 45  EYAKEALDKGLTHYGP--NIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMG 102

Query: 152 SN--LKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL--NDDESPDLDKLKEMLSR 207
            +  LK G+EV++       A V +       G     +     D+   ++D+LK+ ++ 
Sbjct: 103 LSAFLKDGEEVLIP----TPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTD 158

Query: 208 KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDA--------CQSVPHMVVDV 256
           KT+ ++I+   N   ++L    +EEI  +  +    V+ D               +    
Sbjct: 159 KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLD 218

Query: 257 QGLDADFLVASSHKMCGPTG--IGFLF 281
              +    V    K    TG  +GF+ 
Sbjct: 219 GMFERTITVNGFSKTFAMTGWRLGFVA 245

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

 Score = 37.8 bits (87), Expect = 0.001
 Identities = 30/173 (17%), Positives = 64/173 (36%), Gaps = 16/173 (9%)

Query: 128 DSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKF 187
              E + T   ++A+  +  +     L  GDEVI  V   +    P  +           
Sbjct: 90  TPEETIVTVGGSQALFNLFQAI----LDPGDEVI--VLSPYWVSYPEMVRFAGGVVVEVE 143

Query: 188 LNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVD 244
               +   PD ++++  ++ +TK +V++  +N   ++ P   +E +   + +    ++ D
Sbjct: 144 TLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSD 203

Query: 245 ACQSV-----PHMVVDVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAM 290
                      H        +    V  + K    TG  IG+  G  +++ AM
Sbjct: 204 EIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGPKEVIKAM 256

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	368
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	100.0
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	100.0
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	100.0
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	100.0
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	100.0
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	100.0
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.97
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.97
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	99.96
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.96
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	99.95
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	99.95
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.95
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.95
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.94
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.93
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.93
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	99.93
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	99.93
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	99.92
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.92
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	99.92
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	99.91
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.91
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	99.91
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.91
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	99.91
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.91
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.9
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	99.9
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.9
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	99.89
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	99.89
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.89
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.88
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	99.88
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.87
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.87
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.86
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	99.86
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.85
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.85
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	99.84
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	99.84
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.83
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	99.82
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	99.82
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.81
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	99.8
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	99.8
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	99.8
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.8
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	99.79
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	99.79
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.79
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.79
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.78
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.78
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	99.78
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	99.77
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	99.76
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.75
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.75
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.74
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	99.73
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	99.73
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	99.72
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	99.69
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	99.69
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.67
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	99.66
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	99.66
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	99.66
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.62
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	99.6
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.6
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	99.57
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.55
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	99.54
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.54
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.53
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	99.51
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.5
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.41
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	99.38
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	99.32

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.6e-47  Score=359.22  Aligned_cols=316  Identities=46%  Similarity=0.786  Sum_probs=287.3

Q ss_pred             hhhcCCCCcccccccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCC
Q 017640           49 HITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD  128 (368)
Q Consensus        49 ~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~  128 (368)
                      +.+|++||.+..... +++++|||+++.+++|+.|.+++.+++...+.||+++.+..+....+.+++.|+.+++++|+.+
T Consensus         5 ~~vR~~FP~l~~~~~-~~~~iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~   83 (405)
T d1jf9a_           5 DKVRADFPVLSREVN-GLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARS   83 (405)
T ss_dssp             HHHHHTCGGGGCEET-TEECEECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHHhChhcccCcC-CCCeEEEeCccccCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            568899999965433 3567999999999999999999999999999999888888888888999999999999999876


Q ss_pred             CCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccC
Q 017640          129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRK  208 (368)
Q Consensus       129 ~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~  208 (368)
                      +++|+|++|+|++++.++.++....+.+||+|++.+.+|+++..+|+.++++.|++++.+|+++++.+|++.++++++++
T Consensus        84 ~~~i~~~~~~T~~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~g~~~~~~~~~~i~~~  163 (405)
T d1jf9a_          84 AEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEK  163 (405)
T ss_dssp             GGGEEEESSHHHHHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCTT
T ss_pred             cccccccCcHHHHHHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCCCCcCCHHHHHHhccCC
Confidence            56999999999999999887432247899999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEcccccc
Q 017640          209 TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLS  288 (368)
Q Consensus       209 ~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~  288 (368)
                      |++|++++.+|.||.+.|+++|.++||++|+++++|++|+.|..++|+..+++|++++|+||++||+|+|++++++++++
T Consensus       164 t~lv~~~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~~~id~~~~~~D~~~~s~hK~~Gp~G~g~l~v~~~~~~  243 (405)
T d1jf9a_         164 TRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQ  243 (405)
T ss_dssp             EEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCSSCEEEEECHHHHT
T ss_pred             cEEEEEecCCCcccccCchHHhhhHHHHcCCeeecccceeccccccchhhcCCceeeccccccccCCCceeeeechhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcccCCcceeeccc-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcC
Q 017640          289 AMPPFLGGGEMISDVFL-DHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHN  365 (368)
Q Consensus       289 ~l~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g  365 (368)
                      .+.|...++........ +...+.+.+.||+.||+++.+++++..+++++.+.|++.+.++...|.+++.+.+.+.+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~l~~~~~  321 (405)
T d1jf9a_         244 EMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPD  321 (405)
T ss_dssp             TCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred             ccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhhhhcCCc
Confidence            99998887776665443 335556778899999999999999999999999999999999999999999998887654

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=100.00  E-value=1.8e-46  Score=355.38  Aligned_cols=320  Identities=62%  Similarity=0.964  Sum_probs=290.9

Q ss_pred             chhhhhcCCCCcccccccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcC
Q 017640           46 SLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN  125 (368)
Q Consensus        46 ~~~~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~  125 (368)
                      +++..||++||.+....+ ++++||||+++.+++|+.|++++.+++...+.|++++.+..+....+.+++.|+.+++++|
T Consensus         2 ~~~a~iR~~FP~l~~~~~-~~~~iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llg   80 (408)
T d1t3ia_           2 SLAATVRQDFPILNQEIN-GHPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFIN   80 (408)
T ss_dssp             CHHHHHGGGCGGGSCEET-TEECEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHhCcccccccC-CCCeEEeeCccccCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhC
Confidence            467789999999965433 3568999999999999999999999999988999888888888888999999999999999


Q ss_pred             CCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhc
Q 017640          126 ASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEML  205 (368)
Q Consensus       126 ~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l  205 (368)
                      +++++.+++++++++++++++.++....+++|++|++.+.+|+++..++...+++.|.+++.++.+.++..+.+.+++++
T Consensus        81 a~~~~~i~~~~~tt~~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~l~~~~  160 (408)
T d1t3ia_          81 ARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLL  160 (408)
T ss_dssp             CSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHC
T ss_pred             CCCcccEEeecchHHHHHHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeeccccccccHHHhhhcc
Confidence            98766899999999999999887433357899999999999999999999999999999999999999999999999999


Q ss_pred             ccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEccc
Q 017640          206 SRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSD  285 (368)
Q Consensus       206 ~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~  285 (368)
                      +++|++|++++.+|.||.+.|+++|.++|+++|+++++|++|++|..++|+..+++|++++|+||++||+|+|+++++++
T Consensus       161 ~~~t~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~~~id~~~~~~D~~~~s~hK~~gp~G~g~l~v~~~  240 (408)
T d1t3ia_         161 SEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEE  240 (408)
T ss_dssp             CTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTTCEEEEECHH
T ss_pred             CCCceEEEEecccccccccCcHHHHhhhhhccCceeeeccceecccccccccccCCceEEeccccccCCCCccccccchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcC
Q 017640          286 LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHN  365 (368)
Q Consensus       286 li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g  365 (368)
                      ....++|...||............+...+.+|+.||+++.+++++..+++++.+.|+++++++..++.+++.+.+.+.++
T Consensus       241 ~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~~~~  320 (408)
T d1t3ia_         241 ILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQ  320 (408)
T ss_dssp             HHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             hhhcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHhhhhccCcc
Confidence            99888999888877666666666667778899999999999999999999999999999999999999999999988765


Q ss_pred             C
Q 017640          366 T  366 (368)
Q Consensus       366 ~  366 (368)
                      .
T Consensus       321 ~  321 (408)
T d1t3ia_         321 L  321 (408)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=100.00  E-value=1.7e-39  Score=304.67  Aligned_cols=302  Identities=24%  Similarity=0.311  Sum_probs=261.4

Q ss_pred             CCCcccccccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEE
Q 017640           54 DFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIV  133 (368)
Q Consensus        54 ~f~~~~~~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~  133 (368)
                      +||.+       ++.+|||+++.+++|+.|++++.+++..+..++.. ....+....+.++++|+.+|+++|++++ +|+
T Consensus         1 ~fp~l-------~~~~yld~~~~~~~p~~v~ea~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~~~~~~-~i~   71 (381)
T d1elua_           1 QFPGL-------ANKTYFNFGGQGILPTVALEAITAMYGYLQENGPF-SIAANQHIQQLIAQLRQALAETFNVDPN-TIT   71 (381)
T ss_dssp             CCGGG-------TTSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCSS-SHHHHHHHHHHHHHHHHHHHHHTTSCGG-GEE
T ss_pred             CCCCC-------CCCEEeeCCcccCCCHHHHHHHHHHHHHhhcCCCc-cchhhHHHHHHHHHHHHHHHHHhCCCcc-cEE
Confidence            57777       56799999999999999999999999877666543 3344455677888999999999999875 899


Q ss_pred             EeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCC--CHHHHHHhcccCceE
Q 017640          134 FTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESP--DLDKLKEMLSRKTKL  211 (368)
Q Consensus       134 ~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~--d~~~l~~~l~~~~~~  211 (368)
                      +|+|+|+++++++.++   .+++||+|++++++|+++...+..+++..|++++.++.+.+...  +.+.+++++++++++
T Consensus        72 ~~~g~t~a~~~~~~~l---~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~~t~~  148 (381)
T d1elua_          72 ITDNVTTGCDIVLWGL---DWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRL  148 (381)
T ss_dssp             EESSHHHHHHHHHHHS---CCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEE
T ss_pred             EECChHHHhhhcchhh---hhcCCceEEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhcccccc
Confidence            9999999999999998   57899999999999999999999999999999999998754322  367788889999999


Q ss_pred             EEEcccccccccccCHHHHHHHHHhc----CCEEEEecCCcCCcccccCCCCCccEEEecCcCcC-CCCcceEEEEcccc
Q 017640          212 VVIHHISNMLASILPIEEIVHWSHDV----GAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMC-GPTGIGFLFGKSDL  286 (368)
Q Consensus       212 v~~~~~~n~tG~~~~l~~i~~l~~~~----g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~-g~~G~G~l~~~~~l  286 (368)
                      +++++++|+||.+.|+++|.++|++|    ++++++|++|+.|..++++...++|++++|+||++ +|.|+|++++++++
T Consensus       149 v~i~~~~n~tG~~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~~~~~~~D~~~~s~~K~~~~p~G~g~l~~~~~~  228 (381)
T d1elua_         149 VILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDC  228 (381)
T ss_dssp             EEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTT
T ss_pred             cccccccccccccchhhHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccchhhHHHhhHHH
Confidence            99999999999999999999999985    69999999999999999999999999999999965 58899999999999


Q ss_pred             cccCCCcccCCcceeeccc-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHhhc
Q 017640          287 LSAMPPFLGGGEMISDVFL-DHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQ-KIHAYEVKWIICSIIVIQERH  364 (368)
Q Consensus       287 i~~l~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~-~i~~~~~~l~~~l~~~l~~~~  364 (368)
                      ++.+.|...||........ ....+.....++..||++...++++.++++++...|.. ...++..++.+++.+.|++++
T Consensus       229 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~  308 (381)
T d1elua_         229 LGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLP  308 (381)
T ss_dssp             GGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             HHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhcccccchhhhhhHHHHHHHHHhcCC
Confidence            9999998888876554332 22455667788999999999999999999999998764 556889999999999999988


Q ss_pred             CCC
Q 017640          365 NTT  367 (368)
Q Consensus       365 g~t  367 (368)
                      |++
T Consensus       309 ~~~  311 (381)
T d1elua_         309 HVH  311 (381)
T ss_dssp             TEE
T ss_pred             CeE
Confidence            753

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.3e-38  Score=295.47  Aligned_cols=280  Identities=25%  Similarity=0.322  Sum_probs=247.4

Q ss_pred             EEeccCCCCCCcHHHHHHHHHHHHH--hhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHH
Q 017640           69 VYLDNAATSQKPIAVLKALQNYYEA--YNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVA  146 (368)
Q Consensus        69 i~l~~~~~~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~  146 (368)
                      ||||+++.++.++.|++++.+++..  .++||++..|..+....+.++++|+.+|+++|++++ +|+||+|+|++++.++
T Consensus         4 iYlD~aa~~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~-~I~~~~~~t~~l~~~~   82 (391)
T d1p3wa_           4 IYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPR-EIVFTSGATESDNLAI   82 (391)
T ss_dssp             EECBTTTCCCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGG-GEEEESSHHHHHHHHH
T ss_pred             EEeeCccccCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCC-cEEEECCHHHHHHHHH
Confidence            7999999999999999999988754  446787777777777888999999999999999875 9999999999999999


Q ss_pred             HHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccC
Q 017640          147 YSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILP  226 (368)
Q Consensus       147 ~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~  226 (368)
                      .++....+++||+|++.+++|+++...++. ++..|++++.++.++++.+|+++++++++++|++|++++++|+||.++|
T Consensus        83 ~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~-~~~~G~~v~~v~~~~~~~~d~~~~~~~i~~~T~lv~is~~~n~tG~~~~  161 (391)
T d1p3wa_          83 KGAANFYQKKGKHIITSKTEHKAVLDTCRQ-LEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQD  161 (391)
T ss_dssp             HHHHHHHGGGCCEEEEETTSCHHHHHHHHH-HHHTTCEEEEECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTCCBCC
T ss_pred             hhhhhhhcCCCCEEEEeccccchHHHHHHH-HHHcCCEEEEeCCCCCCeEcHHHHHHhCCCCcEEEEEECCCCCCeeECC
Confidence            875222258999999999999998876654 5677999999999988999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCcceeecccC
Q 017640          227 IEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLD  306 (368)
Q Consensus       227 l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~  306 (368)
                      +++|+++||+||+++++|++|+.|..++|+...++|++++|++|++|++|+|+++++++.+....+...||..       
T Consensus       162 ~~~I~~~~~~~~~~~ivD~~~~~g~~~~d~~~~~~D~~~~s~~k~~g~~g~g~~~~~~~~~~~~~~~~~gg~~-------  234 (391)
T d1p3wa_         162 IAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGH-------  234 (391)
T ss_dssp             HHHHHHHHHHHTCEEEEECTTTBTTBCCCTTTSCCSEEEEESTTTTSCSSCEEEEECBTTBCCCCCSSCSSCT-------
T ss_pred             HHHHHHHhccCCcEEEEeeccccCCccccchhccccccccccccccCCCceEEEEEecchhcccCCcccCCcc-------
Confidence            9999999999999999999999999999999999999999999999999999999999999888888877654       


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcC
Q 017640          307 HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHN  365 (368)
Q Consensus       307 ~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g  365 (368)
                             ..++..|+.++...+++..+++...+. .....++..++..++.+.|.++.+
T Consensus       235 -------~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~  285 (391)
T d1p3wa_         235 -------ERGMRSGTLPVHQIVGMGEAYRIAKEE-MATEMERLRGLRNRLWNGIKDIEE  285 (391)
T ss_dssp             -------TTTTSCSCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTTTTSTT
T ss_pred             -------ccCcccCcchhhhhhhhhhhhhHHHHH-hhHHHHHHHHHHHHHHHHHHhhcC
Confidence                   256778899999999998888877765 455567888888888888877654

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.2e-34  Score=269.15  Aligned_cols=277  Identities=25%  Similarity=0.353  Sum_probs=240.0

Q ss_pred             eEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHH
Q 017640           68 LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAY  147 (368)
Q Consensus        68 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~  147 (368)
                      .||||+++.+++|+.|.+++.+++...+.||+ +.+..+....+.+++.|+.+++++|++++ +|+|++|+|+++..++.
T Consensus         2 ~iyld~a~~~~~p~~v~ea~~~~~~~~~~np~-~~~~~~~~~~~~~~~aR~~ia~l~~~~~~-~i~~~~~~T~~l~~~~~   79 (376)
T d1eg5a_           2 RVYFDNNATTRVDDRVLEEMIVFYREKYGNPN-SAHGMGIEANLHMEKAREKVAKVLGVSPS-EIFFTSCATESINWILK   79 (376)
T ss_dssp             CEECBTTTCCCCCHHHHHHHHHHHHTCCCCTT-CSSHHHHHHHHHHHHHHHHHHHHHTSCGG-GEEEESCHHHHHHHHHH
T ss_pred             EEEEECcccccCCHHHHHHHHHHHHHcCCCCc-cccHHHHHHHHHHHHHHHHHHHHcCCCCC-cEEEECCHHHHHHhhhh
Confidence            48999999999999999999999999888887 46677777888899999999999999875 99999999999999987


Q ss_pred             HccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCH
Q 017640          148 SWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPI  227 (368)
Q Consensus       148 ~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l  227 (368)
                      ++......+|+.|++...+|++....++ .++..|++++.+|+++++.+|+++++++++++|++|++++++|+||.+.|+
T Consensus        80 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~-~~~~~g~~v~~vp~~~~~~id~~~l~~~i~~~t~lv~is~v~~~tG~~~~~  158 (376)
T d1eg5a_          80 TVAETFEKRKRTIITTPIEHKAVLETMK-YLSMKGFKVKYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPV  158 (376)
T ss_dssp             HHHHHTTTTCCEEEECTTSCHHHHHHHH-HHHHTTCEEEECCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCH
T ss_pred             cccccccccCcccccccccchhhHHHHH-HHHhcCCEEEEEcCCCCCeECHHHHHHhcCCCceEEEEECCccccceeeee
Confidence            6543347888888888877777665554 557779999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhc--CCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCcceeeccc
Q 017640          228 EEIVHWSHDV--GAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFL  305 (368)
Q Consensus       228 ~~i~~l~~~~--g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~  305 (368)
                      +++.++++.+  |+++++|++|+.|..++++...++|++++|+||++||+|.|+++++++.  .++|...||+..     
T Consensus       159 ~~i~~~~~~~~~~~~~~vD~~q~~g~~~~d~~~~~~D~~~~s~~K~~gp~G~~~l~~~~~~--~~~p~~~g~~~~-----  231 (376)
T d1eg5a_         159 EDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGV--PIRPLIHGGGQE-----  231 (376)
T ss_dssp             HHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTTCEEEEECTTS--CCCCSBCSSCTT-----
T ss_pred             hhhhhhhhhcccCceeEEEeeeccccccccccccCccceecccceeecCCCceeEEeccCc--ccCCcccCCCCc-----
Confidence            9999998665  8999999999999999999999999999999999999999999998875  577877776652     


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhc
Q 017640          306 DHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERH  364 (368)
Q Consensus       306 ~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~  364 (368)
                               ..+..|+.+.........+.+.... .......+...+..++.+.|....
T Consensus       232 ---------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~  280 (376)
T d1eg5a_         232 ---------RGLRSGTQNVPGIVGAARAMEIAVE-ELSEAAKHMEKLRSKLVSGLMNLG  280 (376)
T ss_dssp             ---------TTTBCSCCCHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             ---------ccccCCcccchhhhhHHHHhhcccc-chhhhhhhhhhhhhhhcccccccc
Confidence                     4567889999998888887776655 567777888888888888887653

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=100.00  E-value=1.5e-33  Score=265.89  Aligned_cols=302  Identities=19%  Similarity=0.202  Sum_probs=241.7

Q ss_pred             hhhhcCCCCcccccccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC
Q 017640           48 GHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS  127 (368)
Q Consensus        48 ~~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~  127 (368)
                      ...+|++|++.       +++||||+++.+++|+.|.+++.+++...+.++.. .+..+..+.+..+++|+.+|+++|++
T Consensus        15 l~~~R~~F~~~-------~~~iYLd~as~g~~p~~v~~a~~~~l~~~~~~~~~-~~~~~~~~~~~~e~~R~~iA~llga~   86 (404)
T d1qz9a_          15 LAPLRQQFALP-------EGVIYLDGNSLGARPVAALARAQAVIAEEWGNGLI-RSWNSAGWRDLSERLGNRLATLIGAR   86 (404)
T ss_dssp             TGGGGGGBCCC-------TTCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGG-GHHHHTSGGGHHHHHHHHHHTTTTCC
T ss_pred             HHHHHhcCCCC-------CCCEEcCCcccccCCHHHHHHHHHHHHHHhcccCc-ccccchhHHHHHHHHHHHHHHHhCCC
Confidence            36689999976       78899999999999999999999998876555532 22223334577889999999999999


Q ss_pred             CCCcEEEeCCHHHHHHHHHHHccC--CCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhc
Q 017640          128 DSGEIVFTKNATEAINLVAYSWGL--SNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEML  205 (368)
Q Consensus       128 ~~~~v~~t~g~t~a~~~~~~~~~~--~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l  205 (368)
                      ++ +|+||+|+|++++.++.....  ....+++.+++.+.+|++....+.....    ++..++.+.++..+++.+++++
T Consensus        87 ~~-ei~~~~~~T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i  161 (404)
T d1qz9a_          87 DG-EVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLA----DMLQQGYTLRLVDSPEELPQAI  161 (404)
T ss_dssp             TT-SEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHH----HHHCSSCEEEEESSGGGHHHHC
T ss_pred             CC-cEEEecCchHHHHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhh----eeeeeceeccccccchhHHHhc
Confidence            86 899999999999887654210  0146788888888888876554444322    2222333334555889999999


Q ss_pred             ccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCc-CCCCc-ceEEEEc
Q 017640          206 SRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKM-CGPTG-IGFLFGK  283 (368)
Q Consensus       206 ~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~-~g~~G-~G~l~~~  283 (368)
                      +++|++|++++++|.||.++|+++|+++|+++|+.+++|++|+.|..++++...++|++++|.||+ ++++| +|+++.+
T Consensus       162 ~~~T~lV~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~~g~~~~~  241 (404)
T d1qz9a_         162 DQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVS  241 (404)
T ss_dssp             STTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTCCCEEEEC
T ss_pred             CCCceEEEEecccccccceecHHHHhccccccccceeEEeeccccccccccccccceEEEEechhhcccCCceEEEEEec
Confidence            999999999999999999999999999999999999999999999999999999999999999995 46665 8999999


Q ss_pred             ccccccCCCcccCCcceeeccc--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Q 017640          284 SDLLSAMPPFLGGGEMISDVFL--DHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQ  361 (368)
Q Consensus       284 ~~li~~l~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~  361 (368)
                      +++++.+.+...+++.....+.  ..........+++.++++......+..+++++...+.+.++++...+..++...+.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~  321 (404)
T d1qz9a_         242 PQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVE  321 (404)
T ss_dssp             TTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHH
Confidence            9998888876666655443332  23445566788999999999999999999999999999999988888887666554


Q ss_pred             h
Q 017640          362 E  362 (368)
Q Consensus       362 ~  362 (368)
                      +
T Consensus       322 ~  322 (404)
T d1qz9a_         322 Q  322 (404)
T ss_dssp             H
T ss_pred             h
Confidence            3

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.97  E-value=1.3e-29  Score=235.05  Aligned_cols=261  Identities=17%  Similarity=0.173  Sum_probs=190.3

Q ss_pred             CCCcHHHHHHHHHHHHHhhccCCCCcchhh-HHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCC
Q 017640           77 SQKPIAVLKALQNYYEAYNSNVHRGIHFLS-AKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLK  155 (368)
Q Consensus        77 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~  155 (368)
                      +.+++++++++.++...+....+....... .......+.+++.+|+++|++   ++++|+|+|+|+..++.++    ++
T Consensus        12 ~~l~~~a~~a~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~g~e---~~~~t~g~t~a~~~~~~al----~~   84 (364)
T d2e7ja1          12 GKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD---VARVTNGAREAKFAVMHSL----AK   84 (364)
T ss_dssp             CCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS---EEEEESSHHHHHHHHHHHH----CC
T ss_pred             CcCCHHHHHHHHHHhcCCchhccccccccccccChHHHHHHHHHHHHHhCcC---EEEEECcHHHHHHHHHHHH----hC
Confidence            467888999887764432110000000000 011235677999999999985   7899999999999999999    89


Q ss_pred             CCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC--CCCCCHHHHHHhccc-----CceEEEEcccccccccccCHH
Q 017640          156 SGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSR-----KTKLVVIHHISNMLASILPIE  228 (368)
Q Consensus       156 ~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~-----~~~~v~~~~~~n~tG~~~~l~  228 (368)
                      +||+|+++.++|++++..    ++..|++++.+|+++  ++.+|++++++++++     ++++|++++++|+||.+.|++
T Consensus        85 ~gd~Vi~~~~~h~s~~~~----~~~~g~~v~~v~~~~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l~  160 (364)
T d2e7ja1          85 KDAWVVMDENCHYSSYVA----AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVK  160 (364)
T ss_dssp             TTCEEEEETTCCHHHHHH----HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHH
T ss_pred             CCcEEEeecccccccchH----HHhccceEEEeeeccccccccCHHHHHhhhhhhcccCCceEEEeecCCCCCceeecch
Confidence            999999999999997655    345699999999863  578999999999964     346899999999999999999


Q ss_pred             HHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCc-ceEEEEcccccccCCCcccCCcceeecccCC
Q 017640          229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTG-IGFLFGKSDLLSAMPPFLGGGEMISDVFLDH  307 (368)
Q Consensus       229 ~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G-~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~  307 (368)
                      +|.++|++||+++++|++|+.|..+++...+++|++++|+||++|++| +|+++++++.++.+.........        
T Consensus       161 ~I~~ia~~~~i~livD~a~~~g~~~~~~~~~g~D~~~~S~~K~~~~~g~~g~l~~~~~~~~~~~~~~~~~~~--------  232 (364)
T d2e7ja1         161 KIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKN--------  232 (364)
T ss_dssp             HHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCTT--------
T ss_pred             hheeccccccchhhccccchhhhhhhcccccccceeeeccccccCCCCCEEEEEECHHHHHHHHhhccccCc--------
Confidence            999999999999999999999999888888899999999999887665 99999999887765433211110        


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          308 STFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       308 ~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                           ....+..++......+++..+++...+. .+...+. .+.++++.+++.++
T Consensus       233 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~-~~~~~~~~~~l~~~  281 (364)
T d2e7ja1         233 -----KEVELLGCTARGATIITLMASFPHVRER-IKRWDEE-VEKARRFAAEMEKL  281 (364)
T ss_dssp             -----SBGGGTTCCCCSHHHHHHHHHHHHHHHH-GGGHHHH-HHHHHHHHHHHHHT
T ss_pred             -----ccccccccccchhHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHc
Confidence                 1122334455666667777777766543 2333333 34566777777665

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.4e-29  Score=234.57  Aligned_cols=278  Identities=14%  Similarity=0.088  Sum_probs=227.2

Q ss_pred             EeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHc
Q 017640           70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSW  149 (368)
Q Consensus        70 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~  149 (368)
                      .|-..++.+.++.|++++...          ..+..+..+.+.++++|+.+++++|.+.++.|+|+.|+|+++++++..+
T Consensus        21 ~l~~pGP~~~~~~Vl~am~~~----------~i~HRs~~f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l   90 (388)
T d1h0ca_          21 LLLGPGPSNLPPRIMAAGGLQ----------MIGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNV   90 (388)
T ss_dssp             EECSSSCCCCCHHHHHHHTCC----------CCCTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHH
T ss_pred             ccccCCCCCCCHHHHHHhCcC----------CCCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHh
Confidence            455556778899998886421          1234567789999999999999999987667999999999999999998


Q ss_pred             cCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc-CceEEEEcccccccccccCHH
Q 017640          150 GLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASILPIE  228 (368)
Q Consensus       150 ~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~l~  228 (368)
                          +.+|+.+++...+|++..  +...++..+..+..+..+..+.+|.+.+++.+.. +++++++++.+|.||.+.|++
T Consensus        91 ----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i~pi~  164 (388)
T d1h0ca_          91 ----LEPGDSFLVGANGIWGQR--AVDIGERIGARVHPMTKDPGGHYTLQEVEEGLAQHKPVLLFLTHGESSTGVLQPLD  164 (388)
T ss_dssp             ----CCSSCCEEECBSSHHHHH--HHHHHHHHC--CBCCBCCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCT
T ss_pred             ----hccCCceeeecccceeee--eccccccccccccccccCCccccchHHHHHHhccCCcceEEEeeeeeccccccCHH
Confidence                889999999999888865  4445566788888888877888898888776654 889999999999999999999


Q ss_pred             HHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcC-CCCcceEEEEcccccccCCCcccCCcceeecccC-
Q 017640          229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMC-GPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLD-  306 (368)
Q Consensus       229 ~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~-g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~-  306 (368)
                      +|.++|++||+++++|++|+.|..+++++.+++|++++|.||++ ||+|+|+++++++.++.+.+...++......... 
T Consensus       165 ~i~~~~~~~g~~~~vD~~qs~g~~~~d~~~~~~D~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (388)
T d1h0ca_         165 GFGELCHRYKCLLLVDSVASLGGTPLYMDRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWL  244 (388)
T ss_dssp             THHHHHHTTTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCTTCEEEEECHHHHHHHTTCSSCCSCSTTCHHHH
T ss_pred             HHHHHhhcccccceeccccccccccccccccccceecccccccccCCCceEEEeecHHHHHhhhhccccccccccccchh
Confidence            99999999999999999999999999999999999999999955 6777999999999888776555443321110000 


Q ss_pred             -CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          307 -HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       307 -~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                       .........++..+|+++..++++.++++++.+.|++.+.++..++.+++++.+.+.
T Consensus       245 ~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~  302 (388)
T d1h0ca_         245 ANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQAL  302 (388)
T ss_dssp             HHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhhc
Confidence             011123445677889999999999999999999999999999999999999998776

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=99.96  E-value=2.5e-28  Score=228.63  Aligned_cols=268  Identities=16%  Similarity=0.142  Sum_probs=192.9

Q ss_pred             CCCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC-CCCcEEEeCCHHHHH
Q 017640           65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-DSGEIVFTKNATEAI  142 (368)
Q Consensus        65 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~~v~~t~g~t~a~  142 (368)
                      |.++|.|..+.+. ++|+.+++++.+.++...  .   .|....+..+..+.+.+.+.+..|.. .+++|++|+|+++++
T Consensus        29 g~~vi~l~~G~p~~~~p~~v~~a~~~~~~~~~--~---~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al  103 (388)
T d1j32a_          29 GIDVCSFSAGEPDFNTPKHIVEAAKAALEQGK--T---RYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSI  103 (388)
T ss_dssp             TCCCEECCCSSCSSCCCHHHHHHHHHHHHTTC--C---SCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred             CCCeEECCCCCCCCCCCHHHHHHHHHHHhcCC--C---CCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHH
Confidence            3578999998877 678999999998886421  0   11111112333333333444444554 235999999999999


Q ss_pred             HHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC--CCCCCHHHHHHhcccCceEEEEcccccc
Q 017640          143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVVIHHISNM  220 (368)
Q Consensus       143 ~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~~~~~v~~~~~~n~  220 (368)
                      ..++.++    +++||+|++++|.|+..    ...++..|++++.++...  ++.+|+++|+++++++++++++++|+||
T Consensus       104 ~~~~~~~----~~~gd~Vlv~~P~y~~~----~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~P~NP  175 (388)
T d1j32a_         104 FNLMLAM----IEPGDEVIIPAPFWVSY----PEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNP  175 (388)
T ss_dssp             HHHHHHH----CCTTCEEEEESSCCTHH----HHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTT
T ss_pred             HHHHHHH----hCCCCEEEEcCCCcHHH----HHHHHHhcCeEEEEecccccccCCCHHHHHHhCCCCCeEEEECCCCCC
Confidence            9999998    89999999999988874    444556689999998763  3678999999999999999999999999


Q ss_pred             cccccC---HHHHHHHHHhcCCEEEEecCCcCCccc----ccCC-----CCCccEEEecCcCcCCCCc--ceEEEEcccc
Q 017640          221 LASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV----VDVQ-----GLDADFLVASSHKMCGPTG--IGFLFGKSDL  286 (368)
Q Consensus       221 tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~~----~~~~-----~~~~d~~~~s~~K~~g~~G--~G~l~~~~~l  286 (368)
                      ||.+++   +++|+++|++||++||+|++|+.-...    ..+.     ..+..+++.|+||.|+.+|  +||++.++++
T Consensus       176 TG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~~~~~~~~  255 (388)
T d1j32a_         176 TGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPL  255 (388)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCHHH
T ss_pred             CCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhhhcchhHeEEEEECHHH
Confidence            999999   778888999999999999999632221    1111     1135789999999999888  9999999998


Q ss_pred             cccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          287 LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       287 i~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      ++.+.....                     .....++.....++...+....+ .++..+++.++..+++.+.|.+.+|+
T Consensus       256 ~~~~~~~~~---------------------~~~~~~~~~~q~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~g~  313 (388)
T d1j32a_         256 VKAATKIQG---------------------HSTSNVCTFAQYGAIAAYENSQD-CVQEMLAAFAERRRYMLDALNAMPGL  313 (388)
T ss_dssp             HHHHHHHHH---------------------TTTCSCCHHHHHHHHHHHHSCSH-HHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred             HHHHHHhhh---------------------hccccccHHHHHHHhhcccchHH-HHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            876543221                     11124455555555444442222 25667777888888888888887665


Q ss_pred             C
Q 017640          367 T  367 (368)
Q Consensus       367 t  367 (368)
                      +
T Consensus       314 ~  314 (388)
T d1j32a_         314 E  314 (388)
T ss_dssp             B
T ss_pred             E
Confidence            4

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3.2e-28  Score=227.42  Aligned_cols=283  Identities=16%  Similarity=0.118  Sum_probs=221.6

Q ss_pred             EeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC---CCCcEEEeCCHHHHHHHHH
Q 017640           70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS---DSGEIVFTKNATEAINLVA  146 (368)
Q Consensus        70 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~---~~~~v~~t~g~t~a~~~~~  146 (368)
                      .|-..++.+.++.|++++..        +  .....+..+.+..+++++.+.+.++..   ..+.|+||+|+|+++++++
T Consensus         5 ~l~~PGP~~v~~~V~~Am~~--------~--~~~hr~~~f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~   74 (382)
T d2bkwa1           5 TLLIPGPIILSGAVQKALDV--------P--SLGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFA   74 (382)
T ss_dssp             EECSSSSCCCCHHHHHTTSC--------C--CCCTTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHH
T ss_pred             cccCCCCCCCCHHHHHHhCc--------c--cCCCCcHHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHH
Confidence            34455566788898887631        1  122334566778888888888888853   2237899999999999999


Q ss_pred             HHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC-CCCCCHHHHHHhcc-cCceEEEEcccccccccc
Q 017640          147 YSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLS-RKTKLVVIHHISNMLASI  224 (368)
Q Consensus       147 ~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~l~-~~~~~v~~~~~~n~tG~~  224 (368)
                      .++.+ ..++||+|++...++++..  +...++..+..+..+...+ ....+.+.+++++. .+++++++++.+|.||..
T Consensus        75 ~~l~~-~~~~gd~vlv~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~  151 (382)
T d2bkwa1          75 SNFIL-SKAPNKNVLVVSTGTFSDR--FADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVL  151 (382)
T ss_dssp             HHHSC-TTCSCCEEEEECSSHHHHH--HHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEE
T ss_pred             HHHHH-hcCCCCceEEEEechhhhh--hhhhccccccccccccccCCCCccchhHHHHHhhhccchheeeeecccccccc
Confidence            99832 3578999999998888865  4455677788887776544 45667888887765 478999999999999999


Q ss_pred             cCHHHHHHHHHhc--CCEEEEecCCcCCcccccCCCCCccEEEecCcCcC-CCCcceEEEEcccccccCCCcccCCccee
Q 017640          225 LPIEEIVHWSHDV--GAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMC-GPTGIGFLFGKSDLLSAMPPFLGGGEMIS  301 (368)
Q Consensus       225 ~~l~~i~~l~~~~--g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~-g~~G~G~l~~~~~li~~l~~~~~g~~~~~  301 (368)
                      .|++++.+.|++|  ++++++|++|++|..++|++.+++|++++|.||++ ||+|+|++++++++++.+.+...++....
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~vDa~qs~g~~pid~~~~giD~~~~s~~K~l~gP~G~g~l~vs~~~~~~~~~~~~~~~~~~  231 (382)
T d2bkwa1         152 SDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHG  231 (382)
T ss_dssp             CCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSC
T ss_pred             ccchhhhhhccccccceeeeeecccccccccccccccCeeEEeecccccCcCCCchhhhhccHHHHhhhhhcccCCCccc
Confidence            9999999998876  49999999999999999999999999999999965 89999999999999988887765544322


Q ss_pred             ecccCC-----CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcC
Q 017640          302 DVFLDH-----STFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHN  365 (368)
Q Consensus       302 ~~~~~~-----~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g  365 (368)
                      ......     ........+...+||++..++++..+++++.+.|.+.+.++.+++++++++.+.+..+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~  300 (382)
T d2bkwa1         232 YFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQ  300 (382)
T ss_dssp             STTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             chhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhccc
Confidence            111000     0001123455678999999999999999999999999999999999999999987654

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=3.7e-27  Score=220.23  Aligned_cols=259  Identities=16%  Similarity=0.140  Sum_probs=188.0

Q ss_pred             CCCeEEeccCCCC-CCcHHHHHHHHHHHHHh-hccCCCCcchhhHHHHHHHHHHHHHHHHHc----CCC-CCCcEEEeCC
Q 017640           65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAY-NSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS-DSGEIVFTKN  137 (368)
Q Consensus        65 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~-~~~~v~~t~g  137 (368)
                      |.++|.|..+... ++|+.+++++.+.+.+. ..++.          .....++|+.+++++    |.+ ++++|++|+|
T Consensus        30 G~~vi~l~~g~p~~~~p~~i~~a~~~~~~~~~~~Y~~----------~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G   99 (382)
T d1b5pa_          30 GVDLVALTAGEPDFDTPEHVKEAARRALAQGKTKYAP----------PAGIPELREALAEKFRRENGLSVTPEETIVTVG   99 (382)
T ss_dssp             TCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCC----------TTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESH
T ss_pred             CCCeEECCCCCCCCCCCHHHHHHHHHHHhcCCcCCCC----------CCCCHHHHHHHHhhhhhhcccccccccceecCC
Confidence            4678999999887 67899999999888642 11111          111225666666655    443 2359999999


Q ss_pred             HHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC--CCCCCHHHHHHhcccCceEEEEc
Q 017640          138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVVIH  215 (368)
Q Consensus       138 ~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~~~~~v~~~  215 (368)
                      +++++..++.++    +++||.|++.+|.|+.    +...++..|++++.++..+  ++.+|++++++++++++++++++
T Consensus       100 ~~~al~~~~~~l----~~~gd~vl~~~P~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~~~  171 (382)
T d1b5pa_         100 GSQALFNLFQAI----LDPGDEVIVLSPYWVS----YPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVN  171 (382)
T ss_dssp             HHHHHHHHHHHH----CCTTCEEEEEESCCTH----HHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEE
T ss_pred             HHHHHHHHHHHh----CCCCCEEEECCCCcHH----HHHHHHHhcCeEEEEecccccccCCCHHHHHHhCCCCCeEEEEC
Confidence            999999999999    8999999999998887    4455667799999999864  36789999999999999999999


Q ss_pred             ccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc------cccCCCCCccEEEecCcCcCCCCc--ceEEEEcc
Q 017640          216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM------VVDVQGLDADFLVASSHKMCGPTG--IGFLFGKS  284 (368)
Q Consensus       216 ~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~------~~~~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~  284 (368)
                      +|+||||.+++   +++|+++|++||++||+|++|+.-..      +.. ...+..+++.|+||.|+.+|  +||+++++
T Consensus       172 ~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~-~~~~~~i~~~s~SK~~~~~GlR~G~~~~~~  250 (382)
T d1b5pa_         172 SPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGR-VAPEHTLTVNGAAKAFAMTGWRIGYACGPK  250 (382)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGG-TCTTTEEEEEESTTTTTCGGGCCEEEECCH
T ss_pred             CCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHH-cCCCCEEEEecchhhccCcHhheEEEEECH
Confidence            99999999999   77899999999999999999983211      111 12246789999999999888  99999999


Q ss_pred             cccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH--HHhCHHHHHHHHHHHHHHHHHHHHh
Q 017640          285 DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL--STIGMQKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       285 ~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~--~~~g~~~i~~~~~~l~~~l~~~l~~  362 (368)
                      ++++.+.....                     ....+++.....++..++...  ...-....+++.+...+.+.+.+.+
T Consensus       251 ~~i~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  309 (382)
T d1b5pa_         251 EVIKAMASVSR---------------------QSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTA  309 (382)
T ss_dssp             HHHHHHHHHHH---------------------TTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH---------------------hcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhh
Confidence            88876543321                     111244444444443333311  1112445556666666666666665


Q ss_pred             h
Q 017640          363 R  363 (368)
Q Consensus       363 ~  363 (368)
                      .
T Consensus       310 ~  310 (382)
T d1b5pa_         310 L  310 (382)
T ss_dssp             H
T ss_pred             c
Confidence            4

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.95  E-value=3.2e-27  Score=221.08  Aligned_cols=271  Identities=17%  Similarity=0.169  Sum_probs=194.2

Q ss_pred             hhcCCCCcccccccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHH-hhccCCCCcchhhHHHHHHHHHHHHHHHHHcC--
Q 017640           50 ITRPDFPILHQEVYGSKKLVYLDNAATS-QKPIAVLKALQNYYEA-YNSNVHRGIHFLSAKATDEYELARKKVAAFIN--  125 (368)
Q Consensus        50 ~~r~~f~~~~~~~~~~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~--  125 (368)
                      .||+.|.....    .+++|.|..+.++ ++|+.+++++.+.++. ...++.          .....++|++++++++  
T Consensus        13 ~ir~~~~~~~~----~~dvi~l~~g~p~~~~p~~v~~~~~~a~~~~~~~Y~~----------~~G~~~lr~aia~~~~~~   78 (388)
T d1gdea_          13 EIRKLFDIAAG----MKDVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGP----------NIGLLELREAIAEKLKKQ   78 (388)
T ss_dssp             HHHHHHHHHHH----CTTCEECCCCSCCSCCCHHHHHHHHHHHHTTCCSCCC----------TTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC----CCCeEECCCCCCCCCCCHHHHHHHHHHHhcCccCCCC----------CcCCHHHHHHHHHHHHhh
Confidence            35555544322    2678999999887 6789999999988875 212211          1122367777777653  


Q ss_pred             --C--CCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC--CCCCCHH
Q 017640          126 --A--SDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLD  199 (368)
Q Consensus       126 --~--~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~  199 (368)
                        .  .++++|++|+|+++++..++.++    +++||+|++.+|.|+..    ...++..|++++.+++++  ++.+|++
T Consensus        79 ~~~~~~~~~~i~~t~G~~~~l~~~~~~l----~~~gd~vlv~~P~y~~~----~~~~~~~g~~~~~~~~~~~~~~~~d~~  150 (388)
T d1gdea_          79 NGIEADPKTEIMVLLGANQAFLMGLSAF----LKDGEEVLIPTPAFVSY----APAVILAGGKPVEVPTYEEDEFRLNVD  150 (388)
T ss_dssp             HCCCCCTTTSEEEESSTTHHHHHHHTTT----CCTTCEEEEEESCCTTH----HHHHHHHTCEEEEEECCGGGTTCCCHH
T ss_pred             ccccCCChheeeeccCcchHHHHHHHHh----cCCCCEEEECCCCcHHH----HHHHHHcCCEEEEeecccccCCCCCHH
Confidence              2  23358999999999999999988    89999999999999884    444566699999999874  4688999


Q ss_pred             HHHHhcccCceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc------cc-cCCC-CCccEEEecC
Q 017640          200 KLKEMLSRKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM------VV-DVQG-LDADFLVASS  268 (368)
Q Consensus       200 ~l~~~l~~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~------~~-~~~~-~~~d~~~~s~  268 (368)
                      +|++.++++++++++++|+||||.+++   +++|+++|++||++||+|++|+.-..      ++ .+.. .+..+++.|+
T Consensus       151 ~l~~~~~~~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~  230 (388)
T d1gdea_         151 ELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGF  230 (388)
T ss_dssp             HHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEES
T ss_pred             HHHHhCccCCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCC
Confidence            999999999999999999999999999   77888999999999999999973211      11 2222 2467899999


Q ss_pred             cCcCCCCc--ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-hCHHHH
Q 017640          269 HKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST-IGMQKI  345 (368)
Q Consensus       269 ~K~~g~~G--~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~-~g~~~i  345 (368)
                      ||.||.+|  +||+++++++++.+......                     ...+.+.....++..+++.... ......
T Consensus       231 SK~~~~~GlR~G~ii~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  289 (388)
T d1gdea_         231 SKTFAMTGWRLGFVAAPSWIIERMVKFQMY---------------------NATCPVTFIQYAAAKALKDERSWKAVEEM  289 (388)
T ss_dssp             TTTTTCGGGCCEEEECCHHHHHHHHHHHHT---------------------TTCSCCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hhhccCccccEEEEEeeccchhhhhhcccc---------------------ccccccccchhhHHHHHhhccchhHHHHH
Confidence            99999888  99999999887766543321                     1124455555555555532111 113445


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 017640          346 HAYEVKWIICSIIVIQER  363 (368)
Q Consensus       346 ~~~~~~l~~~l~~~l~~~  363 (368)
                      +++..+....+.+.+.+.
T Consensus       290 ~~~~~~~~~~~~~~l~~~  307 (388)
T d1gdea_         290 RKEYDRRRKLVWKRLNEM  307 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhhhhhhhhhhc
Confidence            555566666666666654

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.95  E-value=5.1e-27  Score=217.35  Aligned_cols=270  Identities=16%  Similarity=0.135  Sum_probs=204.0

Q ss_pred             CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCc-EEEeCCHHHHHHHHHHHccCCC
Q 017640           75 ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGE-IVFTKNATEAINLVAYSWGLSN  153 (368)
Q Consensus        75 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~-v~~t~g~t~a~~~~~~~~~~~~  153 (368)
                      ++.+.++.|++++.+.          ..+..+..+.+.++++|+.+++++|+++++. +++|+|+|+++++++.++    
T Consensus         7 GP~~~~~~V~~A~~~~----------~~~~~~~~~~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l----   72 (361)
T d1m32a_           7 GPLTTSRTVKEAMLFD----------SCTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSA----   72 (361)
T ss_dssp             SSCCCCHHHHHTTCCC----------CCTTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHS----
T ss_pred             CCCCCCHHHHHHhhhh----------ccCCCcHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHh----
Confidence            3556788888775321          1234445567788899999999999987643 678899999999999998    


Q ss_pred             CCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCC--CHHHHHHhcccCceEEEEcccccccccccCHHHHH
Q 017640          154 LKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESP--DLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV  231 (368)
Q Consensus       154 ~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~--d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~  231 (368)
                      ..+++.+++....++...  +....+..+.....+........  +.+.......++++++++++.+|.||.+.|+++|.
T Consensus        73 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~~~i~~i~  150 (361)
T d1m32a_          73 LGPQDKVLIVSNGAYGAR--MVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVG  150 (361)
T ss_dssp             CCTTCCEEEEESSHHHHH--HHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHH
T ss_pred             hhhccccceeeehhhhhh--HHHHhhhhhcccccccccccCCccchhhHHHHHhccCccceEEEeeecccccchhhhhhh
Confidence            566666555555444332  33334555666666666555443  34444555667899999999999999999999999


Q ss_pred             HHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCc-CCCCcceEEEEcccccccCCCcccCCcceeecccCCCCC
Q 017640          232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKM-CGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTF  310 (368)
Q Consensus       232 ~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~-~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~  310 (368)
                      ++|++||+++++|++|++|..++|++++++|++++|.||+ +||+|+|+++++++.++..++...++..........   
T Consensus       151 ~~~~~~g~~~~vDa~qs~G~~~~d~~~~~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---  227 (361)
T d1m32a_         151 ALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRC---  227 (361)
T ss_dssp             HHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHH---
T ss_pred             hhhcccceeeEeecccccCcccccccccccceEEeeecccccCCCCceEEEechhhhhhhccccccccccchhhhcc---
Confidence            9999999999999999999999999999999999999995 578999999999999999998887765432211110   


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHhh
Q 017640          311 ADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG-MQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       311 ~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g-~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      .....+...+|++...++++..++..+...| .+...++...+++.+.+.+.+.
T Consensus       228 ~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  281 (361)
T d1m32a_         228 MEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL  281 (361)
T ss_dssp             HHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhc
Confidence            0111344457999999999999999888876 4566677778888888887654

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=2e-26  Score=214.15  Aligned_cols=260  Identities=16%  Similarity=0.151  Sum_probs=199.9

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL  144 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~  144 (368)
                      .+.|.|..+.+. ++|+.+++++.+.+.....++..          ....++|+++|++++.+++ +|++|+|+++++..
T Consensus        25 ~~~I~ls~g~p~~~~p~~i~~al~~~l~~~~~Y~~~----------~G~~elr~aiA~~~~~~~~-~Iiit~G~~~al~~   93 (368)
T d1v2da_          25 LGAVNLGQGFPSNPPPPFLLEAVRRALGRQDQYAPP----------AGLPALREALAEEFAVEPE-SVVVTSGATEALYV   93 (368)
T ss_dssp             HTCEECCCCSCSSCCCHHHHHHHHHHTTTSCSCCCT----------TCCHHHHHHHHHHHTSCGG-GEEEESSHHHHHHH
T ss_pred             CCCEEecCCCCCCCCCHHHHHHHHHHhhcccCCCCC----------cCCHHHHHHHHhhcccCCc-ceeeccchHHHHHH
Confidence            457899888776 67899999999887654333321          1233799999999999875 99999999999999


Q ss_pred             HHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC---CCCCCCHHHHHHhcccCceEEEEccccccc
Q 017640          145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN---DDESPDLDKLKEMLSRKTKLVVIHHISNML  221 (368)
Q Consensus       145 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~---~~~~~d~~~l~~~l~~~~~~v~~~~~~n~t  221 (368)
                      ++.++    +++||.|++.+|+|+....    .++..|.+++.++++   .++.+|++.+++++.++++++++++|+|||
T Consensus        94 ~~~~l----~~~~d~v~~~~p~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NPt  165 (368)
T d1v2da_          94 LLQSL----VGPGDEVVVLEPFFDVYLP----DAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPT  165 (368)
T ss_dssp             HHHHH----CCTTCEEEEEESCCTTHHH----HHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTT
T ss_pred             Hhhcc----ccccccccccCCcchhhhh----HHHhcCCccceeccccccccccCCHHHHHHhhccCceEEEEcCCCCcc
Confidence            99998    8999999999999998544    345568898888875   347789999999999999999999999999


Q ss_pred             ccccC---HHHHHHHHHhcCCEEEEecCCcCCcccccC-----CCCCccEEEecCcCcCCCCc--ceEEEEcccccccCC
Q 017640          222 ASILP---IEEIVHWSHDVGAKVLVDACQSVPHMVVDV-----QGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMP  291 (368)
Q Consensus       222 G~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~~~~~-----~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~  291 (368)
                      |.+++   +++|+++|++||+++++|++|.........     ...+..+++.|++|.++.+|  +|+++.++++++.+.
T Consensus       166 G~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~~~~~~~~~~~  245 (368)
T d1v2da_         166 GLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLA  245 (368)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHcCCeeeechhhhhhcccccccccccccccccceeecccccccccccccccccccccccchhh
Confidence            99999   778999999999999999999854332111     12246677889999888777  999999999887665


Q ss_pred             CcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       292 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~-g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      .....+                     ....+.....++..++...... .++.++++.++..+++.+.|++. |+
T Consensus       246 ~~~~~~---------------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~  299 (368)
T d1v2da_         246 GMRQWT---------------------SFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GL  299 (368)
T ss_dssp             HHHHHH---------------------TSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             hhhhcc---------------------ccccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHhc-Cc
Confidence            433211                     1144555555555666554443 36777778888888899888876 54

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.94  E-value=7.8e-26  Score=210.43  Aligned_cols=278  Identities=14%  Similarity=0.107  Sum_probs=224.1

Q ss_pred             EEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHH
Q 017640           69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS  148 (368)
Q Consensus        69 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~  148 (368)
                      .+|...++.+.|+.|++++...          ..+..+..+.+.++++|+.+++++|.++++.|+|+.|+|++++.++..
T Consensus        19 ~~l~~PGP~~v~~~Vl~am~~~----------~~~hr~~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~   88 (377)
T d1vjoa_          19 RLLLGPGPSNAHPSVLQAMNVS----------PVGHLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIAN   88 (377)
T ss_dssp             CEECSSSCCCCCHHHHHHHSSC----------CCCTTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHH
T ss_pred             ceeecCCCCCCCHHHHHHhCcC----------CCCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHh
Confidence            4788888889999998876321          234566778999999999999999998777888889999999999999


Q ss_pred             ccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHh-cccCceEEEEcccccccccccCH
Q 017640          149 WGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEM-LSRKTKLVVIHHISNMLASILPI  227 (368)
Q Consensus       149 ~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~-l~~~~~~v~~~~~~n~tG~~~~l  227 (368)
                      +    +.+|+.+++....|.+..  +...++..+.....+....+...+.+..+.. ...+++++++++.+|.||.+.|+
T Consensus        89 ~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~i  162 (377)
T d1vjoa_          89 A----VEPGDVVLIGVAGYFGNR--LVDMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQPL  162 (377)
T ss_dssp             H----CCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCC
T ss_pred             c----cccccccceeeechhhhh--hhhhhhhhcccccccccCCCCcccchhhhhhhhcCcceeeeeeeeeccceeeech
Confidence            8    889999999988887654  4455667777777777665555555555444 45588999999999999999999


Q ss_pred             HHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcC-cCCCCcceEEEEcccccccCCCcccCCcceeecccC
Q 017640          228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLD  306 (368)
Q Consensus       228 ~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~  306 (368)
                      ++|.++||++|.++++|++|++|..+++++.+++|++++|.|| ++||+|+|+++.+++.++...+...++....... .
T Consensus       163 ~~i~~~~~~~g~~~~vDa~~~~g~~~~~~~~~~~d~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  241 (377)
T d1vjoa_         163 EGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDM-N  241 (377)
T ss_dssp             TTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTCH-H
T ss_pred             hhhhhhhhhccceEEEecchhhhhhhhcccccccceeeecccccccCCCEEEEecchhhHHhhhhccCCCCcceeecc-c
Confidence            9999999999999999999999999999999999999999999 5678889999999988876665544433211000 0


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          307 HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       307 ~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      .........++..+++++..+.++..+.+.....|.+.+.++.+++..++.+.+.+.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~  298 (377)
T d1vjoa_         242 LLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI  298 (377)
T ss_dssp             HHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhhhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhcc
Confidence            000011235566789999999999999999999999999999999999999999875

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.93  E-value=6e-25  Score=205.32  Aligned_cols=278  Identities=14%  Similarity=0.132  Sum_probs=217.7

Q ss_pred             EeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHc
Q 017640           70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSW  149 (368)
Q Consensus        70 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~  149 (368)
                      .|-..++...++.|++++.+.          ..+..+..+.+.++++|+.|++++|.++.+.|+++.|+|.+++.++..+
T Consensus        19 ~l~~PGP~~~~~~V~~Am~~~----------~~~hr~~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l   88 (388)
T d2ch1a1          19 IMMGPGPSNCSKRVLTAMTNT----------VLSNFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNL   88 (388)
T ss_dssp             BCCSSSSCCCCHHHHHHTTSC----------CCCTTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHH
T ss_pred             eeeeCCCCCCCHHHHHHhCcC----------CCCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHh
Confidence            444556667899998875321          1235567789999999999999999986545677889999999999999


Q ss_pred             cCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcc-cCceEEEEcccccccccccCHH
Q 017640          150 GLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS-RKTKLVVIHHISNMLASILPIE  228 (368)
Q Consensus       150 ~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~-~~~~~v~~~~~~n~tG~~~~l~  228 (368)
                          +.+|+.+++....+++..  +...+++.+...+.+...+....+.+..++.+. .+++++++++.+|.||...|++
T Consensus        89 ----~~~~~~vl~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~~~  162 (388)
T d2ch1a1          89 ----LEEGDRVLIAVNGIWAER--AVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLE  162 (388)
T ss_dssp             ----CCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCT
T ss_pred             ----cccccccccccccccccc--chhhhhhhcccccccccccccccchhhhhhhhccCCcceeeeeecccccccccchh
Confidence                889999999988887754  555567788888888888777777777766654 4789999999999999999999


Q ss_pred             HHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcC-cCCCCcceEEEEcccccccCCCcccCCcceeecccCC
Q 017640          229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDH  307 (368)
Q Consensus       229 ~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~  307 (368)
                      +|.++||++|+++++|+++++|..++|++++++|++++|.|| +.||+|+|+++++++.++.+.+...++..........
T Consensus       163 ~i~~~~~~~~~~~~vD~~ss~g~~pid~~~~~~d~~~~s~~K~~~gp~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (388)
T d2ch1a1         163 GVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLL  242 (388)
T ss_dssp             THHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHH
T ss_pred             hhcchhccccceeeeeeeecccccccchhccCceEEEEccccccCCCCeEEEEeccHHHHHhhhcccCccccccccchhh
Confidence            999999999999999999999999999999999999999999 5578889999999988876555444333222111100


Q ss_pred             --CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          308 --STFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       308 --~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                        ............+|+++..+.++..+++.+...+.....++.+.+..+....+...
T Consensus       243 ~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (388)
T d2ch1a1         243 GNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM  300 (388)
T ss_dssp             HHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhc
Confidence              11111223334679999999999999999998898888888888877777776554

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=6.5e-25  Score=201.76  Aligned_cols=263  Identities=16%  Similarity=0.143  Sum_probs=202.1

Q ss_pred             EeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHc
Q 017640           70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSW  149 (368)
Q Consensus        70 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~  149 (368)
                      ||-..++.+.++.|++++.+..          .++.+..+.+.++++++.++++++.+.+ .++++.|+|.++++++..+
T Consensus         2 ~L~~PGP~~v~~~V~~am~~~~----------~~hr~~~f~~i~~~~~~~l~~ll~~~~~-~i~~~gsgT~a~e~~~~nl   70 (348)
T d1iuga_           2 WLLTPGPVRLHPKALEALARPQ----------LHHRTEAAREVFLKARGLLREAFRTEGE-VLILTGSGTLAMEALVKNL   70 (348)
T ss_dssp             EECSSSSCCCCHHHHHHHHSCC----------CCTTSHHHHHHHHHHHHHHHHHHTCSSE-EEEEESCHHHHHHHHHHHH
T ss_pred             cccCCCCCCCCHHHHHHhcCCC----------CCCCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEeCchHHHHHHHHHhc
Confidence            5666677788999998875421          2344566789999999999999998753 7789999999999999998


Q ss_pred             cCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHH
Q 017640          150 GLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEE  229 (368)
Q Consensus       150 ~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~  229 (368)
                          +.+|+++++...++++..  +...+++.+.++..+..+....+++++   ....+++.++++|..+.||.+.|+++
T Consensus        71 ----~~~g~~vlv~~~G~f~~~--~~~~a~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~v~~~h~eTstG~~~~i~~  141 (348)
T d1iuga_          71 ----FAPGERVLVPVYGKFSER--FYEIALEAGLVVERLDYPYGDTPRPED---VAKEGYAGLLLVHSETSTGALADLPA  141 (348)
T ss_dssp             ----CCTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCTTT---SCCSSCSEEEEESEETTTTEECCHHH
T ss_pred             ----ccccccceeecchHHHHH--HHHHHHhcCcccccccccCCCcccccc---ccccCCCeeEEEecchhhhhhccHHH
Confidence                889999999888877754  677788899999888876555545433   33567899999999999999999999


Q ss_pred             HHHHHHhcC--CEEEEecCCcCCcccccCCCCCccEEEecCcCcC-CCCcceEEEEcccccccCCCcccCCcceeecccC
Q 017640          230 IVHWSHDVG--AKVLVDACQSVPHMVVDVQGLDADFLVASSHKMC-GPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLD  306 (368)
Q Consensus       230 i~~l~~~~g--~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~-g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~  306 (368)
                      |.++|++|+  .++++|+++++|..+++++.+++|++++|.||.+ ||+|+|++++++++++++++.-..+.....    
T Consensus       142 i~~~~~~~~~~~l~~vDavss~g~~~i~~d~~~iD~~~~~sqK~l~gppG~~~v~~s~~~le~~~~~~~~~dl~~~----  217 (348)
T d1iuga_         142 LARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLARE----  217 (348)
T ss_dssp             HHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHHH----
T ss_pred             HHHHHHhhhccceeechhhhcccccccccccccCCEEEeccccceecCCceeeeeechHHHhhhcccccccchhhh----
Confidence            999999875  7899999999999999999999999999999955 999999999999999988763211110000    


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Q 017640          307 HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVI  360 (368)
Q Consensus       307 ~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l  360 (368)
                      ....   ......+||++..++++..+++.+.+.+.+.. ++.......++..+
T Consensus       218 ~~~~---~~~~~~~Tp~v~~i~~l~~aL~~~~~~~~~~~-~~~~~~~~~~~~~~  267 (348)
T d1iuga_         218 LKAQ---KEGESAWTPAINLVLAVAAVLEEVLPRLEEHL-ALKAWQNALLYGVG  267 (348)
T ss_dssp             HHHH---TTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHH-HHHHHHHHHHHHHH
T ss_pred             hhhh---ccCcccccccchHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHhhhh
Confidence            0000   12233559999999999999998877654443 33333334444433

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.93  E-value=1e-25  Score=211.25  Aligned_cols=268  Identities=14%  Similarity=0.125  Sum_probs=186.1

Q ss_pred             CCCeEEeccCCC---C-CCcHHHHHHHHHHHHHhh-ccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC-CCCcEEEeCCH
Q 017640           65 SKKLVYLDNAAT---S-QKPIAVLKALQNYYEAYN-SNVHRGIHFLSAKATDEYELARKKVAAFINAS-DSGEIVFTKNA  138 (368)
Q Consensus        65 ~~~~i~l~~~~~---~-~~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~~v~~t~g~  138 (368)
                      |.++|+|+.|.+   . ++|+.+++++.+++.... .++.      ..+..++.+.+.+.+.+.+|.+ ++++|++|+|+
T Consensus        29 G~~vi~l~~G~P~~~df~~p~~i~~a~~~a~~~~~~~Y~~------~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~  102 (395)
T d1xi9a_          29 GIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGD------SEGLPELRKAIVEREKRKNGVDITPDDVRVTAAV  102 (395)
T ss_dssp             TCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCCC------TTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHH
T ss_pred             CCCeEECCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCC------CCCCHHHHHHHHHhhhhccccccccccccccccc
Confidence            567899998874   2 678899999999886521 1211      1112333334444444444654 23599999999


Q ss_pred             HHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC--CCCCCCHHHHHHhcccCceEEEEcc
Q 017640          139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDESPDLDKLKEMLSRKTKLVVIHH  216 (368)
Q Consensus       139 t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~l~~~~~~v~~~~  216 (368)
                      ++++.+++.++    +.+||.|++.+|.|+.    +...++..|++++.++..  .++.+|++++++.+.++++++++++
T Consensus       103 ~~~~~~~~~~~----~~~Gd~vlv~~P~y~~----~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~v~l~~  174 (395)
T d1xi9a_         103 TEALQLIFGAL----LDPGDEILVPGPSYPP----YTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVIN  174 (395)
T ss_dssp             HHHHHHHHHHH----CCTTCEEEEEESCCHH----HHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEEES
T ss_pred             chhhhhhhhhh----cCCCCEEEEcCCcccc----chhhhhhcCCEEEEEeccccccccchHHHHHHhhcccccEEEecC
Confidence            99999999998    8999999999998876    555667779999999865  3577899999999999999999999


Q ss_pred             cccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc------cccCCCCCccEEEecCcCcCCCCc--ceEEEEcc-
Q 017640          217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM------VVDVQGLDADFLVASSHKMCGPTG--IGFLFGKS-  284 (368)
Q Consensus       217 ~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~------~~~~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~-  284 (368)
                      |+||||.+++   +++|+++|++||++++.|++|.....      +.........+++.|+||.|+.+|  +||+++.. 
T Consensus       175 P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRvG~~~~~~~  254 (395)
T d1xi9a_         175 PNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDP  254 (395)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEEEEECT
T ss_pred             CCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhcCCCCCEEEEeCcchhcccchhhcEeeEecCH
Confidence            9999999999   67899999999999999999874221      112233345688999999999888  99987543 


Q ss_pred             -cccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          285 -DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       285 -~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                       ..+..+.......                 ... ...++.....++..+++...+ -++..+++.++..+++.+.|.+.
T Consensus       255 ~~~~~~~~~~~~~~-----------------~~~-~~~~~~~~q~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~~  315 (395)
T d1xi9a_         255 ENKLSEVREAIDRL-----------------ARI-RLCPNTPAQFAAIAGLTGPMD-YLKEYMKKLKERRDYIYKRLNEI  315 (395)
T ss_dssp             TCTTHHHHHHHHHH-----------------HHH-TCCSCSHHHHHHHHHHHSCCH-HHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHh-----------------hcC-CCCcCHHHHHHHHHHhcCCHH-HHHHHHHHHHHHHHHHHHHHHhC
Confidence             2222222111000                 000 113344444444444432222 25566777788888888888876


Q ss_pred             cC
Q 017640          364 HN  365 (368)
Q Consensus       364 ~g  365 (368)
                      .+
T Consensus       316 ~~  317 (395)
T d1xi9a_         316 PG  317 (395)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=99.93  E-value=1.1e-24  Score=205.81  Aligned_cols=267  Identities=15%  Similarity=0.160  Sum_probs=187.4

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC--CCCcEEEeCCHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS--DSGEIVFTKNATEAI  142 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~--~~~~v~~t~g~t~a~  142 (368)
                      .+.|.|..|.+. ++|+.+++++++++.......+  .|....+..++.+.+.+.+.+.+|.+  +.++|++|+|+++|+
T Consensus        26 ~~~I~L~~G~Pd~~~p~~i~eal~~a~~~~~~~~~--~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al  103 (418)
T d2r5ea1          26 YKPLNLGQGFPDYHAPKYALNALAAAANSPDPLAN--QYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEAL  103 (418)
T ss_dssp             HCCEECSSSCCSSCCCHHHHHHHHHHHTCSCGGGG--SCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred             CCCEEccCCCCCCCCCHHHHHHHHHHHhCCCccCc--CCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhh
Confidence            356899998877 5678899999888764211111  11111222334444444455555655  335899999999999


Q ss_pred             HHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC----------CCCCHHHHHHhcccCceEE
Q 017640          143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD----------ESPDLDKLKEMLSRKTKLV  212 (368)
Q Consensus       143 ~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~----------~~~d~~~l~~~l~~~~~~v  212 (368)
                      ..++.++    +++||.|++.+|.|+.    +...+...|.+++.|+++++          +.++.+.+++....+++++
T Consensus       104 ~~~~~~l----~~~gd~vlv~~P~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (418)
T d2r5ea1         104 YATIQGH----VDEGDEVIIIEPFFDC----YEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMI  175 (418)
T ss_dssp             HHHHHHH----CCTTCEEEEEESCCTT----HHHHHHHTTCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCCTTEEEE
T ss_pred             hhhhhhc----cccccceeccccccch----hhHHHHHcCCeEEEEEecccccccchhhhhhhhhHHHHhhhhhccccce
Confidence            9999999    8999999999999888    44555667999999998643          3467888988888899999


Q ss_pred             EEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc------c-ccCC-CCCccEEEecCcCcCCCCc--ceE
Q 017640          213 VIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM------V-VDVQ-GLDADFLVASSHKMCGPTG--IGF  279 (368)
Q Consensus       213 ~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~------~-~~~~-~~~~d~~~~s~~K~~g~~G--~G~  279 (368)
                      ++++++||||.+++   +++|+++|++||+++|.|++|.....      . ..+. .....+++.|+||.++.+|  +||
T Consensus       176 ~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~  255 (418)
T d2r5ea1         176 IINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGW  255 (418)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEE
T ss_pred             ecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCccccCCCccccc
Confidence            99999999999999   67888999999999999999974322      1 1121 2346688899999999888  999


Q ss_pred             EEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-h-----CHHHHHHHHHHHH
Q 017640          280 LFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST-I-----GMQKIHAYEVKWI  353 (368)
Q Consensus       280 l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~-~-----g~~~i~~~~~~l~  353 (368)
                      +++++++++.+......                    ...++++.. ..++...+.-... .     -++.++++.+..+
T Consensus       256 ~~~~~~~i~~~~~~~~~--------------------~~~~~~~~~-q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r  314 (418)
T d2r5ea1         256 AYGPEALLKNLQMVHQN--------------------CVYTCATPI-QEAIAVGFETELKRLKSPECYFNSISGELMAKR  314 (418)
T ss_dssp             EESCHHHHHHHHHHHTT--------------------TTCSCCHHH-HHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHH
T ss_pred             ccccchhhhhhhhcccc--------------------cccccccch-hhhccccccccccccccchhhHHHHHHHHHHhh
Confidence            99999988766533211                    111123332 3223222221111 0     1456777788888


Q ss_pred             HHHHHHHHhh
Q 017640          354 ICSIIVIQER  363 (368)
Q Consensus       354 ~~l~~~l~~~  363 (368)
                      +++.+.|.+.
T Consensus       315 ~~l~~~L~~~  324 (418)
T d2r5ea1         315 DYMASFLAEV  324 (418)
T ss_dssp             HHHHHHHHHT
T ss_pred             hhHHhhHhhc
Confidence            8888888875

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=6.3e-25  Score=205.38  Aligned_cols=261  Identities=15%  Similarity=0.131  Sum_probs=185.2

Q ss_pred             CCCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc----CCC-CCCcEEEeCCH
Q 017640           65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS-DSGEIVFTKNA  138 (368)
Q Consensus        65 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~-~~~~v~~t~g~  138 (368)
                      |.++|+|+.+.+. ++|+.+.+++.+.......++.          .....++|+++++++    |.. .+++|++|+|+
T Consensus        27 g~~vi~l~~G~p~~~~p~~~~~al~~~~~~~~~Y~~----------~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~   96 (389)
T d2gb3a1          27 GVRIHHLNIGQPDLKTPEVFFERIYENKPEVVYYSH----------SAGIWELREAFASYYKRRQRVDVKPENVLVTNGG   96 (389)
T ss_dssp             TCEEEECSSCCCCSCCCTHHHHHHHHTCCSSCCCCC----------TTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHH
T ss_pred             CCCEEECCCCCCCCCCCHHHHHHHHhcCCCCCCCCC----------CcCCHHHHHHHHHHHHHhcCCCcccceEEecccc
Confidence            5778999999887 5688888888765332222221          122235566666555    544 33599999999


Q ss_pred             HHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC-CCCCHHHHHHhcccCceEEEEccc
Q 017640          139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSRKTKLVVIHHI  217 (368)
Q Consensus       139 t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~l~~~~~~v~~~~~  217 (368)
                      ++++..++.++    +++||.|++.+|.|+..    ...++..|++++.++.+++ +..+.+.+...+.++++++++++|
T Consensus        97 ~~~l~~~~~~l----~~~gd~V~i~~P~y~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP  168 (389)
T d2gb3a1          97 SEAILFSFAVI----ANPGDEILVLEPFYANY----NAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNP  168 (389)
T ss_dssp             HHHHHHHHHHH----CCTTCEEEEEESCCTHH----HHHHHHHTCEEEEEECCGGGTSCCCTTGGGGCCTTEEEEEEESS
T ss_pred             ccccccccccc----ccCCCeEEEeCCCCccc----cccccccCccccccccccccccchhhhhhhhcccCccEEEeCCC
Confidence            99999999999    89999999999988874    4455666999999998754 444556677778889999999999


Q ss_pred             ccccccccC---HHHHHHHHHhcCCEEEEecCCcCCccc-----ccCCCCCccEEEecCcCcCCCCc--ceEEEEccccc
Q 017640          218 SNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV-----VDVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLL  287 (368)
Q Consensus       218 ~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~~-----~~~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li  287 (368)
                      +||||.+++   +++|.++|++|+++||+|++|..-...     ......+..+++.|++|.++.+|  +||++++++.+
T Consensus       169 ~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~GlRiG~~~~~~~~i  248 (389)
T d2gb3a1         169 CNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEEL  248 (389)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHH
T ss_pred             CccccccchHHHHHHHHhhcccCCEEEEEeccccccccccccccccccccccccccccccccccCcccceeeeeccchhH
Confidence            999999999   789999999999999999999732211     11112356788889999988888  99999877654


Q ss_pred             ccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcC
Q 017640          288 SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHN  365 (368)
Q Consensus       288 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g  365 (368)
                      ........                     .....++.....+...++...+. -++.++++.++..+++.+.|.++.+
T Consensus       249 ~~~~~~~~---------------------~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~L~~~~~  304 (389)
T d2gb3a1         249 ISHAMKLA---------------------QGRLAPPLLEQIGSVGLLNLDDS-FFDFVRETYRERVETVLKKLEEHGL  304 (389)
T ss_dssp             HHHHHHHH---------------------HHSCCCCHHHHHHHHHHHTCCHH-HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhhhh---------------------hccccccccccccccccccccch-hcccccccccccchhhhhhhhhhcc
Confidence            33221110                     01123445555554444432222 2567778888889999999988754

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=3e-24  Score=203.49  Aligned_cols=293  Identities=13%  Similarity=-0.010  Sum_probs=215.0

Q ss_pred             chhhhhcCCCCcccccccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcC
Q 017640           46 SLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN  125 (368)
Q Consensus        46 ~~~~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~  125 (368)
                      ...+.++++....      |....+|.....+.+++.+.+.+.+.+   +.|..  .....+...++..++.+++++++|
T Consensus        39 ~~~~~i~d~l~~d------g~~~~n~asf~~t~~~~~~~~l~~~~~---~~N~~--~~~~~P~~~~lE~~~v~~la~L~~  107 (450)
T d1pmma_          39 VAFQIINDELYLD------GNARQNLATFCQTWDDENVHKLMDLSI---NKNWI--DKEEYPQSAAIDLRCVNMVADLWH  107 (450)
T ss_dssp             HHHHHHHHHGGGS------CCGGGBCSCCSCCCCCHHHHHHHHHTT---TCBTT--CTTTSHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhccC------CCccccccccccCCCCHHHHHHHHHHH---hcCCC--CcccCccHHHHHHHHHHHHHHHhC
Confidence            3456666655322      222346666556678888777776654   33432  233445678888999999999999


Q ss_pred             CCCCC----cEEEeCCHHHHHHHHHHHccCCC--------CCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC-
Q 017640          126 ASDSG----EIVFTKNATEAINLVAYSWGLSN--------LKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-  192 (368)
Q Consensus       126 ~~~~~----~v~~t~g~t~a~~~~~~~~~~~~--------~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-  192 (368)
                      ++..+    ..++|+|+|+|+.+++.+.++..        ......++++...|.+    +.++|+..|++++.|+.++ 
T Consensus       108 ~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s----~~Kaa~~~gi~~~~v~~~~~  183 (450)
T d1pmma_         108 APAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQIC----WHKFARYWDVELREIPMRPG  183 (450)
T ss_dssp             CCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHH----HHHHHHHTTCEEEECCCBTT
T ss_pred             CCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHH----HHHHHHHcCCCceEeeecCC
Confidence            97432    36999999999999988753210        1122357777776665    7888889999999999986 


Q ss_pred             CCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHH------HhcCCEEEEecCCcCCcccccCC-------CC
Q 017640          193 DESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWS------HDVGAKVLVDACQSVPHMVVDVQ-------GL  259 (368)
Q Consensus       193 ~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~------~~~g~~li~D~a~~~~~~~~~~~-------~~  259 (368)
                      ++.+|+++|+++++++|.+|+.+..+|.||.+.|+++|.++|      +++|+++++|+|++.+..+++..       ..
T Consensus       184 ~~~~d~~~L~~~i~~~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~~~~  263 (450)
T d1pmma_         184 QLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLP  263 (450)
T ss_dssp             BCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTST
T ss_pred             CCcCcHHHHHHHhhhCceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhhhccc
Confidence            499999999999999999999999999999999988777775      56899999999998766544332       23


Q ss_pred             CccEEEecCcCc-CCCCcceEEEEcccccc-cCC---CcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 017640          260 DADFLVASSHKM-CGPTGIGFLFGKSDLLS-AMP---PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAI  334 (368)
Q Consensus       260 ~~d~~~~s~~K~-~g~~G~G~l~~~~~li~-~l~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al  334 (368)
                      ++|.++.|+||+ ++|.|+|+++++++... ...   +...|+..              ......++.+...+.++..++
T Consensus       264 ~aDSi~~s~HK~~~~p~g~g~l~~r~~~~~~~~~~~~~~yl~~~~--------------~~~~~~~sr~~~~~~~~~~~l  329 (450)
T d1pmma_         264 RVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQI--------------GTFAINFSRPAGQVIAQYYEF  329 (450)
T ss_dssp             TEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEEEETTEEE--------------EECCSCCSCBSHHHHHHHHHH
T ss_pred             ceeEeecChhhccCCCCCeeEEEecChhhhhhhcccccCcCCCCc--------------CCCcccCccchHHHHHHHHHH
Confidence            699999999995 56889999999876421 111   11111111              011224466667777888889


Q ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          335 DYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       335 ~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      ..+...|++++.++..++++++.+.|+++++++
T Consensus       330 ~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~e  362 (450)
T d1pmma_         330 LRLGREGYTKVQNASYQVAAYLADEIAKLGPYE  362 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEE
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence            989999999999999999999999999987754

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.92  E-value=2.5e-25  Score=209.77  Aligned_cols=269  Identities=18%  Similarity=0.193  Sum_probs=180.9

Q ss_pred             CCeEEeccCCCC-----CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcC----C------C-CC
Q 017640           66 KKLVYLDNAATS-----QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN----A------S-DS  129 (368)
Q Consensus        66 ~~~i~l~~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~----~------~-~~  129 (368)
                      .++|.|+.+.+.     ++++.+++++.+.+.....+.    |..    .....++|+++|+++.    .      + .+
T Consensus        30 ~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----Y~~----~~G~~~LReaia~~~~~~~~~~~~~~~~~~~  101 (412)
T d1bw0a_          30 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNG----YFP----TVGSPEAREAVATWWRNSFVHKEELKSTIVK  101 (412)
T ss_dssp             SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSS----CCC----TTCCHHHHHHHHHHHHHHHCCSTTTGGGCCG
T ss_pred             CCcEECcCCCCCCCCCccccHHHHHHHHHHhhCCCCCC----CCC----CcCCHHHHHHHHHHHHHhcCcccccCCCCCC
Confidence            578999988643     345677787777665321111    111    1112256777766652    1      1 23


Q ss_pred             CcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC--CCCCCHHHHHHhccc
Q 017640          130 GEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSR  207 (368)
Q Consensus       130 ~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~  207 (368)
                      ++|++|+|+++++..++.++    +++||+|++.+|.|+.    +...++..|++++.+++++  ++.++++.+++.+.+
T Consensus       102 ~~I~it~G~~~al~~~~~~l----~~~Gd~Vlv~~P~y~~----~~~~~~~~G~~~~~v~~~~~~~~~~~~~~l~~~~~~  173 (412)
T d1bw0a_         102 DNVVLCSGGSHGILMAITAI----CDAGDYALVPQPGFPH----YETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDD  173 (412)
T ss_dssp             GGEEEESHHHHHHHHHHHHH----CCTTCEEEEEESCCTH----HHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCT
T ss_pred             CeEEEecccccchhhhhhhh----hccccceeeeeccchh----hhhhhhccCccccccccccccccchhhHHHHhhhhc
Confidence            49999999999999999999    8999999999998877    4455667799999999874  467899999999999


Q ss_pred             CceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc----c-------ccCCCCCccEEEecCcCcCC
Q 017640          208 KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----V-------VDVQGLDADFLVASSHKMCG  273 (368)
Q Consensus       208 ~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~----~-------~~~~~~~~d~~~~s~~K~~g  273 (368)
                      +++++++++++||||.+++   +++|+++|++|+++||+|++|..-..    +       .+.+.....+++.|+||.++
T Consensus       174 ~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~  253 (412)
T d1bw0a_         174 KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLV  253 (412)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTS
T ss_pred             cccccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccccccCccCc
Confidence            9999999999999999999   77888899999999999999873111    1       11122234577889999999


Q ss_pred             CCc--ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Q 017640          274 PTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVK  351 (368)
Q Consensus       274 ~~G--~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~  351 (368)
                      .+|  +||++++++........... ...              .....++....+..+.........+ -+..++++..+
T Consensus       254 ~~G~RvG~~~~~~~~~~~~~~~~~~-~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  317 (412)
T d1bw0a_         254 VPGWRLGWLLYVDPHGNGPSFLEGL-KRV--------------GMLVCGPCTVVQAALGEALLNTPQE-HLDQIVAKIEE  317 (412)
T ss_dssp             CGGGCCEEEEEECTTCSCHHHHHHH-HHH--------------HHHHTCSCHHHHHHHHHHHHSSCHH-HHHHHHHHHHH
T ss_pred             cCCCCcccccccchhhcchhhhhhh-ccc--------------cccccCCchhhhhhccccccccccc-ccccccchhHH
Confidence            888  99999987654321100000 000              0011112222222222222211111 25667777888


Q ss_pred             HHHHHHHHHHhhcCC
Q 017640          352 WIICSIIVIQERHNT  366 (368)
Q Consensus       352 l~~~l~~~l~~~~g~  366 (368)
                      .++++.+.|.+.+|+
T Consensus       318 ~r~~~~~~l~~~~g~  332 (412)
T d1bw0a_         318 SAMYLYNHIGECIGL  332 (412)
T ss_dssp             HHHHHHHHHTTSTTE
T ss_pred             HHHHHHHHHHHhcCc
Confidence            888888888776654

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=99.91  E-value=5.3e-24  Score=199.43  Aligned_cols=203  Identities=15%  Similarity=0.161  Sum_probs=153.8

Q ss_pred             CCCeEEeccCCCC-CCcHHHHHHHHHHHHHh-hccCCCCcchhhHHHHHHHHHHHHHHHHHc----CCC-CCCcEEEeCC
Q 017640           65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAY-NSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS-DSGEIVFTKN  137 (368)
Q Consensus        65 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~-~~~~v~~t~g  137 (368)
                      |++++.|..+.+. ++|+.+++++.+.++.- +.++      .+  ..    ++|+++++++    |.+ ++++|++|+|
T Consensus        30 g~~vi~l~~g~pdf~~p~~v~~al~~~~~~~~~~Y~------~g--~~----~Lr~aia~~~~~~~g~~~~~~~I~vt~G   97 (394)
T d1c7na_          30 GNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYT------GP--TE----EYKKTVKKWMKDRHQWDIQTDWIINTAG   97 (394)
T ss_dssp             CTTCCCCCSSSCSSCCCHHHHHHHHHHHHHCCCSSB------CC--CH----HHHHHHHHHHHHHHCCCCCGGGEEEESS
T ss_pred             CCCeEEccCCCCCCCCCHHHHHHHHHHHhCCCcCCC------CC--CH----HHHHHHHHHHHHhcCCCCCCcceEeecc
Confidence            4678999998888 77899999999988752 1111      11  12    4555555554    554 3359999999


Q ss_pred             HHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC---CCCCCCHHHHHHhcc-cCceEEE
Q 017640          138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN---DDESPDLDKLKEMLS-RKTKLVV  213 (368)
Q Consensus       138 ~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~---~~~~~d~~~l~~~l~-~~~~~v~  213 (368)
                      +++++.+++.++    +++||+|++.+|.|+..    ....+..|.+.+.++..   ..+.+|.+.++..+. +++++++
T Consensus        98 ~~~al~~~~~~~----~~pgd~vi~~~p~~~~~----~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~  169 (394)
T d1c7na_          98 VVPAVFNAVREF----TKPGDGVIIITPVYYPF----FMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALL  169 (394)
T ss_dssp             HHHHHHHHHHHH----CCTTCEEEECSSCCTHH----HHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEE
T ss_pred             chhhhhhhhccc----cccccccccccCcccch----hhHHhhhhhcccccccccccccccchhhhhhhhhccccceEEE
Confidence            999999999998    99999999999987774    34445568888887764   225678888888764 5789999


Q ss_pred             EcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc------cc-cC--CCCCccEEEecCcCcCCCCc--ceE
Q 017640          214 IHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM------VV-DV--QGLDADFLVASSHKMCGPTG--IGF  279 (368)
Q Consensus       214 ~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~------~~-~~--~~~~~d~~~~s~~K~~g~~G--~G~  279 (368)
                      +++|+||||.+++   +++|+++|++|+++||+|++|..-..      +. ..  ......+++.|+||.|+.+|  +|+
T Consensus       170 l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~  249 (394)
T d1c7na_         170 FCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSN  249 (394)
T ss_dssp             EESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEE
T ss_pred             ecccccccceeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeeccccccccccccccccc
Confidence            9999999999999   67889999999999999999973211      11 01  11246688899999999888  788


Q ss_pred             EEEccccc
Q 017640          280 LFGKSDLL  287 (368)
Q Consensus       280 l~~~~~li  287 (368)
                      +++++..+
T Consensus       250 ~~~~~~~i  257 (394)
T d1c7na_         250 IIIKNPDI  257 (394)
T ss_dssp             EECCCHHH
T ss_pred             ccccChhh
Confidence            88876544

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=8.3e-24  Score=195.25  Aligned_cols=200  Identities=13%  Similarity=0.168  Sum_probs=151.1

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL  144 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~  144 (368)
                      ++.+.||.+.+. .+++.+.++      .++.+|....           .++|+++|+++|++++ +|++|+|+++++.+
T Consensus        27 ~~~i~L~~ne~p~~~~~~~~~~------~l~rYPd~~~-----------~~Lr~~ia~~~gv~pe-~I~it~Gs~eai~~   88 (354)
T d1fg7a_          27 NGDVWLNANEYPTAVEFQLTQQ------TLNRYPECQP-----------KAVIENYAQYAGVKPE-QVLVSRGADEGIEL   88 (354)
T ss_dssp             TCSEECSSCCCSSCCCCCCCCC------CTTSCCCSSC-----------HHHHHHHHHHHTSCGG-GEEEESHHHHHHHH
T ss_pred             CCCEEeeCCCCCCCCCHHHHHH------HHhcCCCCcH-----------HHHHHHHHHHhCCChH-HeeeccCchHHHHH
Confidence            567899988755 333333222      1223443221           2799999999999875 99999999999999


Q ss_pred             HHHHccCCCCCCCC-EEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEccccccccc
Q 017640          145 VAYSWGLSNLKSGD-EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLAS  223 (368)
Q Consensus       145 ~~~~~~~~~~~~gd-~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~  223 (368)
                      +++++    +++|| +|++++|.|..    +...++..|.+++.++.++++.+|+++++.++ +++++|++++++||||.
T Consensus        89 ~~~~~----~~pgd~~Vl~~~P~y~~----~~~~~~~~g~~v~~~~~~~~~~~d~~~l~~~~-~~~~~v~~~~pnNPtG~  159 (354)
T d1fg7a_          89 LIRAF----CEPGKDAILYCPPTYGM----YSVSAETIGVECRTVPTLDNWQLDLQGISDKL-DGVKVVYVCSPNNPTGQ  159 (354)
T ss_dssp             HHHHH----CCTTTCEEEECSSSCTH----HHHHHHHHTCEEEECCCCTTSCCCHHHHHTSC-TTEEEEEEESSCTTTCC
T ss_pred             HHHHh----hcccccccccccccccc----chhhhhccCceeeccccccccccchhhhhhcc-cccceeeccCCCcccee
Confidence            99999    89998 58888998776    44555666999999999889999999999887 47899999999999999


Q ss_pred             ccCHH---HHHHHHHhcCCEEEEecCCcCCcc----cccCCCCCccEEEecCcCcCCCCc--ceEEEEcccccccCCCc
Q 017640          224 ILPIE---EIVHWSHDVGAKVLVDACQSVPHM----VVDVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPF  293 (368)
Q Consensus       224 ~~~l~---~i~~l~~~~g~~li~D~a~~~~~~----~~~~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~~~  293 (368)
                      +++.+   .+.+.+ +++.++++|+++.-...    +.........+++.|+||.||.+|  +||++.++++++.+...
T Consensus       160 ~~~~~~~~~~~~~~-~~~~~~iidd~~~~f~~~~~~~~~~~~~~~~iv~~S~SK~~~laGlRiGy~i~~~~~i~~l~~~  237 (354)
T d1fg7a_         160 LINPQDFRTLLELT-RGKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKV  237 (354)
T ss_dssp             CCCHHHHHHHHHHH-TTTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHHHHHHHH
T ss_pred             Eeeecccccccccc-cccccccccccchhhccccccchhhcccccceEEeCCccccCCCccccccccccchhhhhhhhh
Confidence            99944   343333 45677777887652111    111233456688899999999888  99999999998876543

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=1.1e-23  Score=196.01  Aligned_cols=263  Identities=16%  Similarity=0.173  Sum_probs=186.2

Q ss_pred             CCCeEEeccCCCC-CCcHHHHHHHHHHHHHh-hccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC-CCCcEEEeCCHHHH
Q 017640           65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAY-NSNVHRGIHFLSAKATDEYELARKKVAAFINAS-DSGEIVFTKNATEA  141 (368)
Q Consensus        65 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~~v~~t~g~t~a  141 (368)
                      |.++|.|..+.+. ++|+.+++++.+.+... ..++      ...+..+..+.+.+.+.+..+.+ ++++|++|+|+++|
T Consensus        27 G~~vI~l~~G~p~~~~p~~i~~~~~~~~~~~~~~Y~------~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~a  100 (375)
T d1o4sa_          27 GEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVKYT------DPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQA  100 (375)
T ss_dssp             TCCCEECCCSSCSSCCCHHHHHHHHHHHTTCCCCCC------CTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHH
T ss_pred             CCCeEECCCcCCCCCCCHHHHHHHHHHHhcCCcCCC------CCcCCHHHHHHHHhhhhhccccccccccccccCcHHHH
Confidence            4678999999887 67889999998876531 1111      11112333333444444444544 23599999999999


Q ss_pred             HHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC--CCCCCHHHHHHhcccCceEEEEccccc
Q 017640          142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVVIHHISN  219 (368)
Q Consensus       142 ~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~~~~~v~~~~~~n  219 (368)
                      +..++.++    +++||.|++.+|.|+...    ......+.....++.++  ++.+|.+.++....++++++++++|+|
T Consensus       101 l~~~~~~l----~~~gd~vlv~~P~y~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP~N  172 (375)
T d1o4sa_         101 LFNAFMAL----LDPGDEVIVFSPVWVSYI----PQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNN  172 (375)
T ss_dssp             HHHHHHHH----CCTTCEEEEEESCCTTHH----HHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESSCT
T ss_pred             HHHHHHHH----hCCCCEEEEccCccccch----hhhhccccccccccccccccccchhHHHHHhhccCccEEEEeCCCC
Confidence            99999999    899999999999988854    33455688888888763  477899999999999999999999999


Q ss_pred             ccccccC---HHHHHHHHHhcCCEEEEecCCcCCccc------cc-CCCCCccEEEecCcCcCCCCc--ceEEEEccccc
Q 017640          220 MLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV------VD-VQGLDADFLVASSHKMCGPTG--IGFLFGKSDLL  287 (368)
Q Consensus       220 ~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~~------~~-~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li  287 (368)
                      |||.+++   +++|+++|++|+++||+|++|......      +. .+..+..++++|+||.||.+|  +||++.+++.+
T Consensus       173 PTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G~~~~~~~~~  252 (375)
T d1o4sa_         173 PTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEKVA  252 (375)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCHHHH
T ss_pred             CccCCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhccCCccccccccccccch
Confidence            9999999   678889999999999999998843321      11 234567899999999999888  99999999887


Q ss_pred             ccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          288 SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       288 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      +.+......+.                     ...+.....   .+...++. .....+++..+..+.+.+.|++. |++
T Consensus       253 ~~~~~~~~~~~---------------------~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~r~~~~~~~l~~~-g~~  306 (375)
T d1o4sa_         253 TAVSKIQSHTT---------------------SCINTVAQY---AALKALEV-DNSYMVQTFKERKNFVVERLKKM-GVK  306 (375)
T ss_dssp             HHHHHHHHHHT---------------------CSCCHHHHH---HHHHHTTC-CCHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             hhhhhhhcccc---------------------ccccccchh---hhhhhccc-chhhhHHHHHHHHHHHHHHHHhc-Cce
Confidence            66543321111                     122222222   22233333 34566667777777777777765 443

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=99.91  E-value=9.8e-24  Score=199.86  Aligned_cols=217  Identities=17%  Similarity=0.168  Sum_probs=153.6

Q ss_pred             CCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCC---cchhhHHHHHHHHHHHHHHHHHcC------CC-CCCcEEEe
Q 017640           66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRG---IHFLSAKATDEYELARKKVAAFIN------AS-DSGEIVFT  135 (368)
Q Consensus        66 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~r~~la~~~~------~~-~~~~v~~t  135 (368)
                      +++|.|+.+.+..+.+.+.+.+.+............   .....+.......++|+++|++++      .+ ++++|++|
T Consensus        36 ~G~i~l~~~en~l~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it  115 (431)
T d1m7ya_          36 NGIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLT  115 (431)
T ss_dssp             TSBEECSSCCCCSCHHHHHHHHHHCCTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEE
T ss_pred             CcEEEeecccccccHHHHHHHHHhCCchhhhhhhhhhccHHhcCCcCCcCcHHHHHHHHHHHHHHhCCCCCCCcceEEEC
Confidence            679999999988887777766654211100000000   000001111223367777776653      22 23599999


Q ss_pred             CCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC--CCCCHHHHHHhccc------
Q 017640          136 KNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSR------  207 (368)
Q Consensus       136 ~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~l~~------  207 (368)
                      +|+++++..++.++    +++||+|++++|.|+.....+.   ...|++++.++++++  +.+|++.+++.+.+      
T Consensus       116 ~G~~~al~~~~~~l----~~pGd~Vlv~~P~y~~~~~~~~---~~~g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~  188 (431)
T d1m7ya_         116 AGATSANETFIFCL----ADPGEAVLIPTPYYPGFDRDLK---WRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNL  188 (431)
T ss_dssp             EHHHHHHHHHHHHH----CCTTCEEEEEESCCTTHHHHTT---TTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHh----cCCCCEEEEeCCCchhHHHHHH---HhcCceeccccccchhcccccHHHhhhhhhhhhhccC
Confidence            99999999999999    8999999999999988543322   234789999998743  67899999887753      


Q ss_pred             CceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc---------ccc--------CCCCCccEEEec
Q 017640          208 KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---------VVD--------VQGLDADFLVAS  267 (368)
Q Consensus       208 ~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~---------~~~--------~~~~~~d~~~~s  267 (368)
                      +++++++++|+||||.+++   +++|+++|++||++||+|++|+.-..         .+.        ....+..+++.|
T Consensus       189 ~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s  268 (431)
T d1m7ya_         189 RVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYS  268 (431)
T ss_dssp             CEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEE
T ss_pred             cceEEEecCccccccccccccccccccccccccCcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEEEEec
Confidence            6789999999999999999   78899999999999999999973211         000        011234688999


Q ss_pred             CcCcCCCCc--ceEEEEccccccc
Q 017640          268 SHKMCGPTG--IGFLFGKSDLLSA  289 (368)
Q Consensus       268 ~~K~~g~~G--~G~l~~~~~li~~  289 (368)
                      +||.||.+|  +|+++.+++++..
T Consensus       269 ~SK~~~~~G~RiG~~~~~~~~i~~  292 (431)
T d1m7ya_         269 LSKDLGLPGFRVGAIYSNDDMVVA  292 (431)
T ss_dssp             SSSSSCCGGGCEEEEEESCHHHHH
T ss_pred             CcccccCCCCccceeccchhhhHH
Confidence            999999888  9999998887644

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=8.1e-23  Score=188.97  Aligned_cols=259  Identities=11%  Similarity=0.070  Sum_probs=175.8

Q ss_pred             EEeccCCCC-CCcHHHHHHHHHHHHHh-hccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC-CCCcEEEeCCHHHHHHHH
Q 017640           69 VYLDNAATS-QKPIAVLKALQNYYEAY-NSNVHRGIHFLSAKATDEYELARKKVAAFINAS-DSGEIVFTKNATEAINLV  145 (368)
Q Consensus        69 i~l~~~~~~-~~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~~v~~t~g~t~a~~~~  145 (368)
                      |.|.-+... ++|+.+.+++.+.+..- ..++      ...+ .+..+.+.+.+++.+|.+ ++++|++|+|+++++..+
T Consensus         2 ~~~~~~~~df~~p~~i~eal~~~~~~~~~~Y~------~~~g-~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~   74 (361)
T d1d2fa_           2 LPFTISDMDFATAPCIIEALNQRLMHGVFGYS------RWKN-DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSEL   74 (361)
T ss_dssp             EECCSSSCSSCCCHHHHHHHHHHHTTCCCCCC------CSCC-HHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHH
T ss_pred             cCcCCCCCCCCCCHHHHHHHHHHHhCCCCCCC------CCCC-HHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHH
Confidence            344455555 67899999998887531 1111      1111 344555666666666765 335999999999999999


Q ss_pred             HHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC---CCCCCHHHHHHhccc-CceEEEEccccccc
Q 017640          146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND---DESPDLDKLKEMLSR-KTKLVVIHHISNML  221 (368)
Q Consensus       146 ~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~---~~~~d~~~l~~~l~~-~~~~v~~~~~~n~t  221 (368)
                      +.++    +++||+|++.+|.|+..    ...++..|.+++.++.+.   ++.+|++.+++.+.+ +++++++++++|||
T Consensus        75 ~~~l----~~~gd~Vlv~~P~y~~~----~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPT  146 (361)
T d1d2fa_          75 IRQW----SETGEGVVIHTPAYDAF----YKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPT  146 (361)
T ss_dssp             HHHS----SCTTCEEEEEESCCHHH----HHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTT
T ss_pred             hhhc----cccccccccccccccch----hHHHHhhcceEEeecccccccccccccccchhhcccCCceeEEeccccccc
Confidence            9998    89999999999988774    444556699998888753   356899999998854 78999999999999


Q ss_pred             ccccC---HHHHHHHHHhcCCEEEEecCCcCCcc------cccCCCCCccEEEecCcCcCCCCc--ceEEEEccccc-cc
Q 017640          222 ASILP---IEEIVHWSHDVGAKVLVDACQSVPHM------VVDVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLL-SA  289 (368)
Q Consensus       222 G~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~------~~~~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li-~~  289 (368)
                      |.+++   +++|+++|+++|+++|+|++|.....      ++.....+..+++.|++|.++.+|  +||+++..... ..
T Consensus       147 G~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~~~~~~~  226 (361)
T d1d2fa_         147 GKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDA  226 (361)
T ss_dssp             CCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHH
T ss_pred             ccccchhhhhhhhhhhhhhheeeeecccccccccccccccccccccccccccccccccccccccccceeeecchhHHHHH
Confidence            99998   77999999999999999999884221      111112245678889999888776  89987764322 11


Q ss_pred             CCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHh
Q 017640          290 MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       290 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~  362 (368)
                      ......                   ......+++...+.+...+++..... .+..+++.++..+.+.+.+.+
T Consensus       227 ~~~~~~-------------------~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~  279 (361)
T d1d2fa_         227 YLSALK-------------------GRDGLSSPSVLALTAHIAAYQQGAPW-LDALRIYLKDNLTYIADKMNA  279 (361)
T ss_dssp             HHHHHH-------------------TTSCCCSCCHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             Hhhhcc-------------------cccccccchhhhHHHHHHHhhccchh-hhcccccchhhHHHHHHHhhh
Confidence            111110                   11122356666666555555543332 445556666666666665544

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=99.91  E-value=4e-23  Score=195.40  Aligned_cols=214  Identities=15%  Similarity=0.166  Sum_probs=150.8

Q ss_pred             CCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCC--cchhhHHHHHHHHHHHHHHHHHcC----C--C-CCCcEEEeC
Q 017640           66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRG--IHFLSAKATDEYELARKKVAAFIN----A--S-DSGEIVFTK  136 (368)
Q Consensus        66 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~r~~la~~~~----~--~-~~~~v~~t~  136 (368)
                      +++|.|+.+.+.++.+.+.+.+.+............  .+...+...+...++|+++|++++    .  + ++++|++|+
T Consensus        36 ~G~i~l~~aen~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~  115 (428)
T d1iaya_          36 NGVIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAG  115 (428)
T ss_dssp             TSBEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEE
T ss_pred             CceEEeecccCccchHHHHHHHHhCCchhhhHhHhhhCHHhccCcCCcchHHHHHHHHHHHHHHhCCCCCCChhhEEEcC
Confidence            689999999988888877776654321100000000  000001111123367777777653    2  1 235999999


Q ss_pred             CHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC--CCCCCHHHHHHhc------ccC
Q 017640          137 NATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEML------SRK  208 (368)
Q Consensus       137 g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l------~~~  208 (368)
                      |+++++..++.++    +++||+|++++|.|++....+   ....|++++.++++.  ++.+|+++++.++      .++
T Consensus       116 G~~~al~~~~~~l----~~~Gd~Vlv~~P~y~~~~~~~---~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~  188 (428)
T d1iaya_         116 GATGANETIIFCL----ADPGDAFLVPSPYYPAFNRDL---RWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIK  188 (428)
T ss_dssp             HHHHHHHHHHHHH----CCTTCEEEEESSCCTTHHHHT---TTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHh----CCCCCEEEEccCCchHHHHHH---HHhcCCeEEEeecccccccccccccccchhhhhhccCCC
Confidence            9999999999999    899999999999998854322   223588999999874  4688998876554      346


Q ss_pred             ceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc------c---c-c-----CCCCCccEEEecCcC
Q 017640          209 TKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM------V---V-D-----VQGLDADFLVASSHK  270 (368)
Q Consensus       209 ~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~------~---~-~-----~~~~~~d~~~~s~~K  270 (368)
                      ++++++++|+||||.+++   +++|.++|++||++||+|++|+....      +   + +     ....+..+++.|+||
T Consensus       189 ~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK  268 (428)
T d1iaya_         189 VKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSK  268 (428)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTT
T ss_pred             ceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCcccccccccccchhhccccccceEEEEecCCC
Confidence            789999999999999999   67899999999999999999973211      0   0 0     112245688999999


Q ss_pred             cCCCCc--ceEEEEcccc
Q 017640          271 MCGPTG--IGFLFGKSDL  286 (368)
Q Consensus       271 ~~g~~G--~G~l~~~~~l  286 (368)
                      .|+.+|  +|+++..++.
T Consensus       269 ~~~~~GlRiG~~~~~~~~  286 (428)
T d1iaya_         269 DMGLPGFRVGIIYSFNDD  286 (428)
T ss_dssp             TSSCGGGCEEEEEESCHH
T ss_pred             cccCCCcccccccccccc
Confidence            999888  9999986653

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.90  E-value=5.1e-23  Score=189.92  Aligned_cols=253  Identities=12%  Similarity=0.085  Sum_probs=180.8

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL  144 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~  144 (368)
                      .+++-|+.+.+. ++|+.+++++.+....+..+|+.+.           .++|+++|+++|.+++ +|++++|+++++..
T Consensus        22 ~~~idls~~~np~~~p~~~~~a~~~~~~~~~~Yp~~~~-----------~~Lr~aia~~~~v~~~-~I~~~~g~~~~~~~   89 (355)
T d1lc5a_          22 DQLLDFSANINPLGMPVSVKRALIDNLDCIERYPDADY-----------FHLHQALARHHQVPAS-WILAGNGETESIFT   89 (355)
T ss_dssp             GGSEECSSCCCTTCCCHHHHHHHHHTGGGGGSCCCTTC-----------HHHHHHHHHHHTSCGG-GEEEESSHHHHHHH
T ss_pred             hheEEccCCCCCCCCCHHHHHHHHHHHHHhccCCCCCh-----------HHHHHHHHHHhCCCHH-HEEecccHHHHHHH
Confidence            357788776544 5788999999888777655554321           2799999999999875 99999999999998


Q ss_pred             HHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC--CCCCHHHHHHhcccCceEEEEcccccccc
Q 017640          145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLVVIHHISNMLA  222 (368)
Q Consensus       145 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~l~~~~~~v~~~~~~n~tG  222 (368)
                      ++..+      .++.+++..|.|..    +.......+++++.++++.+  +.++ +.+++++.+++++|++++|+||||
T Consensus        90 ~~~~~------~~~~~~v~~p~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~v~l~nP~NPtG  158 (355)
T d1lc5a_          90 VASGL------KPRRAMIVTPGFAE----YGRALAQSGCEIRRWSLREADGWQLT-DAILEALTPDLDCLFLCTPNNPTG  158 (355)
T ss_dssp             HHHHH------CCSEEEEEESCCTH----HHHHHHHTTCEEEEEECCGGGTTCCC-TTHHHHCCTTCCEEEEESSCTTTC
T ss_pred             HHhhh------ccccccccCCccce----eccccccccccceeeeeeccCCccce-eeeeeccccccceeeeecccCccc
Confidence            88765      24455556666655    33444556889999998733  4444 567788888999999999999999


Q ss_pred             cccC---HHHHHHHHHhcCCEEEEecCCcCCcc-----cccCCCCCccEEEecCcCcCCCCc--ceEEEEccccc-ccCC
Q 017640          223 SILP---IEEIVHWSHDVGAKVLVDACQSVPHM-----VVDVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLL-SAMP  291 (368)
Q Consensus       223 ~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~-----~~~~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li-~~l~  291 (368)
                      .+++   +++|+++|++|++++++|++|.....     .......+..+++.|+||.||.+|  +||++++++.+ +.++
T Consensus       159 ~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~~~~~~~  238 (355)
T d1lc5a_         159 LLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMR  238 (355)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHH
T ss_pred             ccchhhhhhhhhhhccccccccccccceeeeeeecccccccccccccceeecccccccccccccccceeccchhhhHHHH
Confidence            9999   67888889999999999999872111     111223356789999999999888  99999987644 3332


Q ss_pred             CcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       292 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      ....                       ..+.+..+..++..+++....  ....+++.++..+++.+.|.+++++
T Consensus       239 ~~~~-----------------------~~~~~~~~~~~a~~~l~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~  288 (355)
T d1lc5a_         239 RQQM-----------------------PWSVNALAALAGEVALQDSAW--QQATWHWLREEGARFYQALCQLPLL  288 (355)
T ss_dssp             HHSC-----------------------TTCSCHHHHHHHHHGGGCHHH--HHHHHHHHHHHHHHHHHHHHTSTTE
T ss_pred             hhcC-----------------------Cccccccccccccccccccch--hHHHHHHHHHHHHHHHHHHhhcCCc
Confidence            1111                       124555556666566553222  4555667777778888888887664

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.9e-23  Score=194.22  Aligned_cols=263  Identities=13%  Similarity=0.162  Sum_probs=187.1

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHH---hhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCC--CCcEEEeCCHH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEA---YNSNVHRGIHFLSAKATDEYELARKKVAAFINASD--SGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~--~~~v~~t~g~t  139 (368)
                      +++|.|..+.+. ++|+.+.+++.+.+..   +..++.      ..+..++.+.+.+.+.+.+|.+-  +++|++|+|++
T Consensus        25 ~dvI~l~~G~p~~~~p~~v~~a~~~al~~~~~~~~Y~~------~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~   98 (418)
T d1w7la_          25 HDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTK------TFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGY   98 (418)
T ss_dssp             SCCEECCCCSCSSCCCHHHHHHHHHHTSSCGGGGSCCC------TTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHH
T ss_pred             CCCEECCCCCCCCCCCHHHHHHHHHHHhCCCcccCCCC------CcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcH
Confidence            678999999987 6788999999887753   111111      11123333334444444456652  24899999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC------------CCCCCHHHHHHhccc
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND------------DESPDLDKLKEMLSR  207 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~------------~~~~d~~~l~~~l~~  207 (368)
                      +++.+++.++    +++||.|++.+|.|+.    +...+...|++++.++..+            ++.+|.+++.....+
T Consensus        99 ~al~~~~~~l----~~~g~~vlv~~p~~~~----y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  170 (418)
T d1w7la_          99 GALFTAFQAL----VDEGDEVIIIEPFFDC----YEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTS  170 (418)
T ss_dssp             HHHHHHHHHH----CCTTCEEEEEESCCTT----HHHHHHHTTCEEEEEECEECC---CCSEEGGGEECCHHHHHHHCCT
T ss_pred             HHHHHHHHhh----ccCCceeeccccccch----hHHHHHHcCCEeeccccccccccccccccccCcccchhhhhccccc
Confidence            9999999999    8999999999998888    4455566799988888652            245688888888888


Q ss_pred             CceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCc------cc-ccCCC-CCccEEEecCcCcCCCCc
Q 017640          208 KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH------MV-VDVQG-LDADFLVASSHKMCGPTG  276 (368)
Q Consensus       208 ~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~------~~-~~~~~-~~~d~~~~s~~K~~g~~G  276 (368)
                      +++++++++++||||.+++   +++|+++|++|++++|+|++|..-.      .+ ..+.. .+..+++.|+||.++.+|
T Consensus       171 ~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG  250 (418)
T d1w7la_         171 RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATG  250 (418)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGG
T ss_pred             cccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccccCCC
Confidence            9999999999999999998   7789999999999999999987321      11 12222 246788999999988778


Q ss_pred             --ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh------CHHHHHHH
Q 017640          277 --IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI------GMQKIHAY  348 (368)
Q Consensus       277 --~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~------g~~~i~~~  348 (368)
                        +||+++++++++.+......                     .....+.....++..++......      -...++++
T Consensus       251 ~RvG~~v~~~~~~~~l~~~~~~---------------------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~  309 (418)
T d1w7la_         251 WKVGWVLGPDHIMKHLRTVHQN---------------------SVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQA  309 (418)
T ss_dssp             GCCEEEECCHHHHHHHHHHHHT---------------------TTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHH
T ss_pred             Ccccccccchhhhhhhcccccc---------------------ccccccchhhHHHHHHhhhccccccccccccccchhh
Confidence              99999999888776543321                     11133444444444454433221      13456667


Q ss_pred             HHHHHHHHHHHHHhh
Q 017640          349 EVKWIICSIIVIQER  363 (368)
Q Consensus       349 ~~~l~~~l~~~l~~~  363 (368)
                      .++.++.+.+.|.+.
T Consensus       310 ~~~~r~~l~~~L~~~  324 (418)
T d1w7la_         310 MQRCRDHMIRSLQSV  324 (418)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             hhhhhhhhhhhhhhc
Confidence            777777888888764

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=2.6e-22  Score=183.56  Aligned_cols=245  Identities=14%  Similarity=0.113  Sum_probs=176.4

Q ss_pred             CCCeEEeccCCCC-CCcHHHHHHHHHHHHHh--hccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC--CCCcEEEeCCHH
Q 017640           65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAY--NSNVHRGIHFLSAKATDEYELARKKVAAFINAS--DSGEIVFTKNAT  139 (368)
Q Consensus        65 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~--~~~~v~~t~g~t  139 (368)
                      ++++++|+.+.+. ++|+.+.+++.+.+...  ..+|..|           ..++|+++|++++..  ++++|++|+|++
T Consensus        18 ~~d~~~l~~~enp~~~p~~i~~~~~~~~~~~~~~~yp~~g-----------~~~Lr~aia~~~~~~~v~~d~I~it~G~~   86 (334)
T d2f8ja1          18 KRDKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYYDSP-----------DEELIEKILSYLDTDFLSKNNVSVGNGAD   86 (334)
T ss_dssp             CCCSEECSSCCCSSCCCHHHHHHHHHHCCTTGGGSCCCSS-----------CHHHHHHHHHHHTCSSCCGGGEEEEEHHH
T ss_pred             CCCceEEECCCCCCCCCHHHHHHHHHHhhcchhcCCCCCC-----------cHHHHHHHHHHhcccCCCcceEEecCcch
Confidence            3689999999766 77889999888776531  1122211           237999999998754  345899999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEccccc
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISN  219 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n  219 (368)
                      +++.+++..        +|+|++.+|+|+.    +...++..|++++.++.++++..+     +...++++++++++|+|
T Consensus        87 ~~l~~l~~~--------~d~v~i~~P~y~~----~~~~~~~~g~~~v~v~~~~~~~~~-----~~~~~~~~~l~l~nP~N  149 (334)
T d2f8ja1          87 EIIYVMMLM--------FDRSVFFPPTYSC----YRIFAKAVGAKFLEVPLTKDLRIP-----EVNVGEGDVVFIPNPNN  149 (334)
T ss_dssp             HHHHHHHHH--------SSEEEECSSCCHH----HHHHHHHHTCCEEECCCCTTSCCC-----CCCCCTTEEEEEESSCT
T ss_pred             hHHHHHhhh--------ccccccccccccc----cccchhccCCcccccccccccccc-----ccccccceEEEeccccc
Confidence            999887653        5899999997776    455556679999999998775543     23456789999999999


Q ss_pred             ccccccCHHHHHHHHHhcCCEEEEecCCcCCcc---cccCCCCCccEEEecCcCcCCCCc--ceEEEEcccccccCCCcc
Q 017640          220 MLASILPIEEIVHWSHDVGAKVLVDACQSVPHM---VVDVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFL  294 (368)
Q Consensus       220 ~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~---~~~~~~~~~d~~~~s~~K~~g~~G--~G~l~~~~~li~~l~~~~  294 (368)
                      |||.+++.++|.++ +++++++|+|+++.....   .......+..+++.|++|.++.+|  +||++.++++++.+....
T Consensus       150 PtG~~~s~~~l~~~-~~~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~i~~l~~~~  228 (334)
T d2f8ja1         150 PTGHVFEREEIERI-LKTGAFVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVR  228 (334)
T ss_dssp             TTCCCCCHHHHHHH-HTTTCEEEEECTTGGGTCCCCGGGGGTCSSEEEEEESTTTSSCTTTCEEEEEECHHHHHHHHHHS
T ss_pred             ccceeecHHHhhcc-ccceeEEeecccchhhcccccccccccCceEEEEecCccccchhhhhhhhcccchHHHHHHHHhh
Confidence            99999999888775 467899999999753211   112223356789999999999888  999999999988766433


Q ss_pred             cCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          295 GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       295 ~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      ..                       ...+.....++.+.++..+.  .+..+++..+.++++.+.|+++
T Consensus       229 ~~-----------------------~~~s~~~~~~a~~~l~~~~~--~~~~~~~~~~~r~~l~~~L~~~  272 (334)
T d2f8ja1         229 LP-----------------------FNVSYVSQMFAKVALDHREI--FEERTKFIVEERERMKSALREM  272 (334)
T ss_dssp             CT-----------------------TCSCHHHHHHHHHHHHTHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cc-----------------------cccchhhhhhcccccccccc--hhhHHHHHHHHHHHHHHHHHHC
Confidence            21                       13344444544455543322  4556667777777888888776

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=99.89  E-value=2.3e-23  Score=195.54  Aligned_cols=273  Identities=12%  Similarity=0.117  Sum_probs=177.5

Q ss_pred             hhhcCCCCcccccccCCCCeEEeccCCCCC---CcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHc-
Q 017640           49 HITRPDFPILHQEVYGSKKLVYLDNAATSQ---KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI-  124 (368)
Q Consensus        49 ~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~---~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~-  124 (368)
                      +.||+.+....     .+++|+|..|.+.+   +.+.+.+++.+.+......      ..+|.......++|+++|+++ 
T Consensus        17 s~ire~~~~~~-----~~~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~~~~~------~~~Y~~~~G~~~lR~aia~~l~   85 (403)
T d1wsta1          17 SEVRELLKLVE-----TSDVISLAGGLPAPETFPVETIKKIAVEVLEEHADK------ALQYGTTKGFTPLRLALARWME   85 (403)
T ss_dssp             HHHHHHHHHHT-----SSSCEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHH------HHSCCCSSCCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHhC-----CCCcEECCCCCCCccccCHHHHHHHHHHHHHhCccc------ccCCCCCcCCHHHHHHHHHHHH
Confidence            34566544432     26789998876542   3446666666665432110      000111122235666666664 


Q ss_pred             ---CCC-CCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHH
Q 017640          125 ---NAS-DSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDK  200 (368)
Q Consensus       125 ---~~~-~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~  200 (368)
                         |.+ ++++|++|+|+++++..++.++    +++||.|++.+|+|+..    ...++..|++++.|+.++++. +...
T Consensus        86 ~~~g~~~~~~~I~it~G~~~al~~~~~~l----~~~gd~v~~~~P~y~~~----~~~~~~~g~~~~~v~~~~~~~-~~~~  156 (403)
T d1wsta1          86 KRYDIPMSKVEIMTVAGSQQALDLIGRVF----LNPGDPIVVEAPTYLAA----IQAFKYYDPEFISIPLDDKGM-RVDL  156 (403)
T ss_dssp             HHHCCCCTTCEEEEESSHHHHHHHHHHHH----CCTTCEEEEEESCCHHH----HHHHHTTCCEEEEEEEETTEE-CHHH
T ss_pred             HHhCCCCChHHeeecccchHHHHHHHHHH----hhcCCccccCCCcchhh----hHHHhhccccceeEeecccCC-cccc
Confidence               443 2359999999999999999998    89999999999987774    445566799999999876532 2222


Q ss_pred             H-------HHhcccCceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCc------ccc-cCCCCCccE
Q 017640          201 L-------KEMLSRKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH------MVV-DVQGLDADF  263 (368)
Q Consensus       201 l-------~~~l~~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~------~~~-~~~~~~~d~  263 (368)
                      +       ....++.+.++++++++||||.+++   +++|+++|++|+++||+|++|..-.      .++ .....+..+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i  236 (403)
T d1wsta1         157 LEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVI  236 (403)
T ss_dssp             HHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEE
T ss_pred             ccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCCCcEE
Confidence            2       2222345678899999999999999   6788889999999999999997311      111 223456789


Q ss_pred             EEecCcCcCCCCc--ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-HHh
Q 017640          264 LVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL-STI  340 (368)
Q Consensus       264 ~~~s~~K~~g~~G--~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~-~~~  340 (368)
                      +++|+||.++ +|  +||++.++++++.+.......                     ....+.....+....+... .+.
T Consensus       237 ~~~S~SK~~~-~G~RiG~~i~~~~~i~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~  294 (403)
T d1wsta1         237 YLGTFSKILA-PGFRIGWVAAHPHLIRKMEIAKQSI---------------------DLCTNTFGQAIAWKYVENGYLDE  294 (403)
T ss_dssp             EEEESTTTTC-GGGCCEEEEECHHHHHHHHHHHHHH---------------------HSSCCHHHHHHHHHHHHTTHHHH
T ss_pred             EEccccceec-CcccccccccchHHHHHHHHHHhhh---------------------ccccccchhhhHHhhhhccccch
Confidence            9999999886 56  999999999887655332110                     1133443333333333321 122


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHhh
Q 017640          341 GMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       341 g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      .++.+++...+..+.+.+.|.+.
T Consensus       295 ~~~~~~~~~~~~~~~~~~~L~~~  317 (403)
T d1wsta1         295 HIPKIIEFYKPRRDAMLEALEEY  317 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhh
Confidence            35667777777777777777765

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=3.5e-22  Score=186.15  Aligned_cols=257  Identities=15%  Similarity=0.109  Sum_probs=186.1

Q ss_pred             CCeEEeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHH----cCCC--CCCcEEEeCCH
Q 017640           66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAF----INAS--DSGEIVFTKNA  138 (368)
Q Consensus        66 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~----~~~~--~~~~v~~t~g~  138 (368)
                      .++|+|..|.+. ++|+.+++++.+.+.+.. +    .|..    .....++|+++|++    +|.+  ++++|++|+|+
T Consensus        26 ~~~i~l~~G~Pd~~~p~~i~~a~~~~~~~~~-~----~Y~~----~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~   96 (382)
T d1u08a_          26 HQAINLSQGFPDFDGPRYLQERLAHHVAQGA-N----QYAP----MTGVQALREAIAQKTERLYGYQPDADSDITVTAGA   96 (382)
T ss_dssp             TTCEECCCSSCSSCCCHHHHHHHHHHHHTTC-C----SCCC----TTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSH
T ss_pred             CCCEEccCCCCCCCCCHHHHHHHHHHHhcCC-C----CCCC----CcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccch
Confidence            567999999887 678899999988876521 1    1111    12222555555555    4654  33369999999


Q ss_pred             HHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC-CCCCHHHHHHhcccCceEEEEccc
Q 017640          139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSRKTKLVVIHHI  217 (368)
Q Consensus       139 t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~l~~~~~~v~~~~~  217 (368)
                      ++++.+++.++    .++||.|++.+|.|+...    ......|+.+..++.+++ +.+|++++++.+.++++++++++|
T Consensus        97 ~~al~~~~~~l----~~~gd~vl~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P  168 (382)
T d1u08a_          97 TEALYAAITAL----VRNGDEVICFDPSYDSYA----PAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTP  168 (382)
T ss_dssp             HHHHHHHHHHH----CCTTCEEEEEESCCTTHH----HHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESS
T ss_pred             HHHHHHHHhhc----ccccceEEEecccccchh----hhhhhccccceecccccccccCCHHHHhhhhccCccEEEECCC
Confidence            99999999999    899999999999888744    445566888888887754 778999999999999999999999


Q ss_pred             ccccccccC---HHHHHHHHHhcCCEEEEecCCcCCccc-------ccC-CCCCccEEEecCcCcCCCCc--ceEEEEcc
Q 017640          218 SNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV-------VDV-QGLDADFLVASSHKMCGPTG--IGFLFGKS  284 (368)
Q Consensus       218 ~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~~-------~~~-~~~~~d~~~~s~~K~~g~~G--~G~l~~~~  284 (368)
                      +||||.+++   +++|.++|++++++++.|+.+......       ... ...+..+++.|++|.++.+|  +||+++++
T Consensus       169 ~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~RiG~~v~~~  248 (382)
T d1u08a_         169 HNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPA  248 (382)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCH
T ss_pred             CcccccccccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCcccchhhhccc
Confidence            999999999   567778888999999999998743221       101 11245689999999998888  99999999


Q ss_pred             cccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Q 017640          285 DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQ  361 (368)
Q Consensus       285 ~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~  361 (368)
                      ++++.+......                     .....+.....++..+++.-++ ....++++.++..+.+.+.+.
T Consensus       249 ~~~~~~~~~~~~---------------------~~~~~~~~~q~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~~~  303 (382)
T d1u08a_         249 PISAEIRKVHQY---------------------LTFSVNTPAQLALADMLRAEPE-HYLALPDFYRQKRDILVNALN  303 (382)
T ss_dssp             HHHHHHHHHHHH---------------------HTSSCCHHHHHHHHHHHHHCTH-HHHTHHHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHhhhcc---------------------cccccccccccccccccccchH-HHHHHHHHHHhhhhhhhhhhc
Confidence            888766533210                     1124555566666666654332 245566666666666666654

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=8.8e-22  Score=182.96  Aligned_cols=247  Identities=15%  Similarity=0.141  Sum_probs=195.9

Q ss_pred             CcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCC
Q 017640           79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD  158 (368)
Q Consensus        79 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd  158 (368)
                      ..|.+++++.+.++++......+  ....+..+...++++.||+++|.+   ..++.++++.|+..++.++    .+++|
T Consensus        53 ~~p~v~~a~~~a~~~~G~~~~~s--r~~~g~~~~~~~lE~~LA~~~g~e---~al~~~SG~~an~~~i~al----~~~~d  123 (383)
T d1bs0a_          53 HHPQIIRAWQQGAEQFGIGSGGS--GHVSGYSVVHQALEEELAEWLGYS---RALLFISGFAANQAVIAAM----MAKED  123 (383)
T ss_dssp             GCHHHHHHHHHHHHHHCSCCCSB--TTTTCCCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHH----CCTTC
T ss_pred             CCHHHHHHHHHHHHHhCCCCCcc--ccccCcchHHHHHHHHHHHhcCCC---ceEEecccchhhHHHHHhh----cCCCc
Confidence            48899999999999875443322  222234677789999999999986   6688888899999999999    89999


Q ss_pred             EEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc---CceEEEEcccccccccccCHHHHHHHHH
Q 017640          159 EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR---KTKLVVIHHISNMLASILPIEEIVHWSH  235 (368)
Q Consensus       159 ~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~---~~~~v~~~~~~n~tG~~~~l~~i~~l~~  235 (368)
                      .|++....|.+....    ++..+.+++.++..     |++++++.+..   +.++|+++.+.+++|.+.|+++|.++|+
T Consensus       124 ~v~~d~~~h~si~~g----~~~~~~~~~~~~hn-----d~~~le~~l~~~~~~~~~vv~e~v~s~~G~i~pl~~l~~l~~  194 (383)
T d1bs0a_         124 RIAADRLSHASLLEA----ASLSPSQLRRFAHN-----DVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQ  194 (383)
T ss_dssp             EEEEETTCCHHHHHH----HHTSSSEEEEECTT-----CHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHH
T ss_pred             eEEeeccccHHHhhc----cccCCCcceEecch-----HHHHHHHHhcccCCCceEEEecCCCCCCCcccchhHHHHHHH
Confidence            999999988886543    45568899999887     88998888753   5689999999999999999999999999


Q ss_pred             hcCCEEEEecCCcCCccccc------CCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCcceeecccCCCC
Q 017640          236 DVGAKVLVDACQSVPHMVVD------VQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHST  309 (368)
Q Consensus       236 ~~g~~li~D~a~~~~~~~~~------~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~  309 (368)
                      +||+++++|++|++|...-+      ......++++.+++|.+|..| |++..+.+.++.++..-.+             
T Consensus       195 ~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~g~~G-g~v~~~~~~~~~l~~~~~~-------------  260 (383)
T d1bs0a_         195 QHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSG-AAVLCSSTVADYLLQFARH-------------  260 (383)
T ss_dssp             HTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSCC-EEEEECHHHHHHHHHHCHH-------------
T ss_pred             hcCcEEEeecceeeeecCCcccchHHHcCCccccccccccccccccc-cccccchhHHHHHHhhchh-------------
Confidence            99999999999998866322      223467889999999999886 8888888887776533211             


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          310 FADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       310 ~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                           ..| +...+.+...++..+++.++....+..+++..++..++.+.+.+.
T Consensus       261 -----~~~-s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~  308 (383)
T d1bs0a_         261 -----LIY-STSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL  308 (383)
T ss_dssp             -----HHS-SBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             -----hhh-cccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence                 011 225566667778888888887667788888999999999998765

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.88  E-value=5.9e-22  Score=188.68  Aligned_cols=286  Identities=13%  Similarity=0.002  Sum_probs=199.9

Q ss_pred             EeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCC--------CcEEEeCCHHHH
Q 017640           70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDS--------GEIVFTKNATEA  141 (368)
Q Consensus        70 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~--------~~v~~t~g~t~a  141 (368)
                      |+++-..+..++.+...+....-  +.|  ...+..++...++..++-+++++++|.+..        ...++|+|+|++
T Consensus        76 f~~~~~~~~~~~~~l~~~~~~~~--n~n--~~~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~a  151 (476)
T d1js3a_          76 FFAYFPTASSYPAMLADMLCGAI--GCI--GFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEA  151 (476)
T ss_dssp             BCSSSCCCCCHHHHHHHHHHHHH--CCC--CSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHH
T ss_pred             eeEeCCCCCCHHHHHHHHHHHhh--ccc--ccchhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHH
Confidence            67776666666666665543332  223  345567778889999999999999999731        256899999999


Q ss_pred             HHHHHHHccCCCC------CC---------CCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcc
Q 017640          142 INLVAYSWGLSNL------KS---------GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS  206 (368)
Q Consensus       142 ~~~~~~~~~~~~~------~~---------gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~  206 (368)
                      +..++.+.+...+      ..         .-.+++++..|+|    +.+.+...|..++.|+.++++.+|+++|+++|+
T Consensus       152 nl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~S----i~ka~~~lGl~~~~v~~d~~~~md~~~L~~~i~  227 (476)
T d1js3a_         152 TLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSS----VERAGLIGGVKLKAIPSDGKFAMRASALQEALE  227 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHH----HHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccccHH----HHHHHHhcCceEEEeccCCCCCcCHHHHHHHHH
Confidence            9999876531111      01         1157888988888    455566679999999999999999999999997


Q ss_pred             cC------ceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCC-----C-CCccEEEecCcCc-CC
Q 017640          207 RK------TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQ-----G-LDADFLVASSHKM-CG  273 (368)
Q Consensus       207 ~~------~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~-----~-~~~d~~~~s~~K~-~g  273 (368)
                      +.      +.+|+.+..++.||.+.|+++|+++|++||+++++|+|++......+-.     . ...|.++.++||+ +.
T Consensus       228 ~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~  307 (476)
T d1js3a_         228 RDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLV  307 (476)
T ss_dssp             HHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSC
T ss_pred             HHHhcCCCcEEEeecCCCccceeeccHHHHHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCcccccc
Confidence            52      4688999999999999999999999999999999999998554433211     1 2589999999995 55


Q ss_pred             CCcceEEEEccccc-ccCCCcccCCcceeecccCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Q 017640          274 PTGIGFLFGKSDLL-SAMPPFLGGGEMISDVFLDHSTF-ADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVK  351 (368)
Q Consensus       274 ~~G~G~l~~~~~li-~~l~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~  351 (368)
                      |.++|++++++... ....  ..+.............. .......+. +... ..+.+..+++.+...|+..+.++..+
T Consensus       308 P~~~g~~l~r~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-sr~~-~al~lw~~l~~~G~~g~~~~i~~~~~  383 (476)
T d1js3a_         308 NFDCSAMWVKRRTDLTGAF--KLDPVYLKHSHQGSGLITDYRHWQLPL-GRRF-RSLKMWFVFRMYGVKGLQAYIRKHVQ  383 (476)
T ss_dssp             CSSCEEEEESCHHHHHGGG--C------------CCSCCCGGGSSSCS-CCCC-THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcceeecccchHHHHHHH--hcChhhhcccccccccccccccccccc-chhh-HHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence            77899999987421 1100  00000000000000000 001112222 3332 33467788898898999999999999


Q ss_pred             HHHHHHHHHHhhcCCC
Q 017640          352 WIICSIIVIQERHNTT  367 (368)
Q Consensus       352 l~~~l~~~l~~~~g~t  367 (368)
                      +++++.+.|++.++++
T Consensus       384 lA~~l~~~l~~~~~fe  399 (476)
T d1js3a_         384 LSHEFEAFVLQDPRFE  399 (476)
T ss_dssp             HHHHHHHHHHHCTTEE
T ss_pred             HHHHHHHHHhcCCCeE
Confidence            9999999999998865

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=1.7e-22  Score=190.65  Aligned_cols=217  Identities=14%  Similarity=0.150  Sum_probs=150.2

Q ss_pred             CCCeEEeccCCCCC---CcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC--CCCcEEEeCCHH
Q 017640           65 SKKLVYLDNAATSQ---KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS--DSGEIVFTKNAT  139 (368)
Q Consensus        65 ~~~~i~l~~~~~~~---~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~--~~~~v~~t~g~t  139 (368)
                      ++++|.|..|.+.+   +.+.+.+++.+.++......  ..|....+..++.+.+.+.+.+..|.+  ++++|++|+|++
T Consensus        37 ~~~~I~l~~G~Pd~~~~P~~~~~~~~~~~~~~~~~~~--~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~  114 (420)
T d1vp4a_          37 DKDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYT--LQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQ  114 (420)
T ss_dssp             STTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHH--TSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHH
T ss_pred             CCCcEecCCcCCCCccCCHHHHHHHHHHHHhhCCccc--cCCCCCcCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchh
Confidence            37899999886542   34455566666555421110  011111112333333444444444543  345999999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcc---------cCce
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS---------RKTK  210 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~---------~~~~  210 (368)
                      +++.+++.++    +++||.|++++|.|+.    +...++..|++++.++.++++ +|++.++..+.         +.+.
T Consensus       115 ~al~~~~~~~----~~~Gd~Vlv~~P~y~~----~~~~~~~~g~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~  185 (420)
T d1vp4a_         115 QALDLIGKLF----LDDESYCVLDDPAYLG----AINAFRQYLANFVVVPLEDDG-MDLNVLERKLSEFDKNGKIKQVKF  185 (420)
T ss_dssp             HHHHHHHHHH----CCTTCEEEEEESCCHH----HHHHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCGGGEEE
T ss_pred             hhHHHHHHhh----hccccccccccccccc----hhHHHHHHhhhcccccccccc-cccchhhhhhhhhHHHhhccccce
Confidence            9999999998    8999999999998776    445566779999999987654 47777655432         2346


Q ss_pred             EEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCcc------c-ccCCCCCccEEEecCcCcCCCCc--ce
Q 017640          211 LVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM------V-VDVQGLDADFLVASSHKMCGPTG--IG  278 (368)
Q Consensus       211 ~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~------~-~~~~~~~~d~~~~s~~K~~g~~G--~G  278 (368)
                      ++++++++||||.+++   +++|+++|++|++++|+|++|..-..      + ......+..++++|++|+++ +|  +|
T Consensus       186 ~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk~~~-~G~RiG  264 (420)
T d1vp4a_         186 IYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-PGLRIG  264 (420)
T ss_dssp             EEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-GGGCEE
T ss_pred             eeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCcccccccccccccceeEEeccccccc-cccccc
Confidence            7779999999999998   68999999999999999999873211      1 11122356678888888765 56  99


Q ss_pred             EEEEcccccccCCCc
Q 017640          279 FLFGKSDLLSAMPPF  293 (368)
Q Consensus       279 ~l~~~~~li~~l~~~  293 (368)
                      |++.++++++.+...
T Consensus       265 ~~~~~~~~i~~l~~~  279 (420)
T d1vp4a_         265 MVAGSKEFIRKIVQA  279 (420)
T ss_dssp             EEECCHHHHHHHHHH
T ss_pred             cccccchhhhhhhhh
Confidence            999999998876543

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.87  E-value=2.9e-21  Score=178.95  Aligned_cols=261  Identities=17%  Similarity=0.183  Sum_probs=197.8

Q ss_pred             CCeEEeccCCCC--CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHH
Q 017640           66 KKLVYLDNAATS--QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN  143 (368)
Q Consensus        66 ~~~i~l~~~~~~--~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~  143 (368)
                      +.+++|..+.+-  ...+.++++..+.++.+......+  ..-.+..+..+++++.+|+++|.+   ..++.+++..|+.
T Consensus        45 ~~~~~FsSndYLGL~~~p~v~~a~~~al~~yG~gs~~S--r~~~G~~~~h~~LE~~lA~~~g~e---~all~~sG~~An~  119 (396)
T d2bwna1          45 QDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGT--RNISGTTAYHRRLEAEIAGLHQKE---AALVFSSAYNAND  119 (396)
T ss_dssp             EEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSB--TTTBCCBHHHHHHHHHHHHHTTCS---EEEEESCHHHHHH
T ss_pred             eEEEEEEcccccCcCCCHHHHHHHHHHHHHhCCCcccc--ccccCCchHHHHHHHHHHHHhCCC---ceeeeecchHHHH
Confidence            345666655443  458899999999999876544322  222334667789999999999997   5577777788998


Q ss_pred             HHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcc----cCceEEEEccccc
Q 017640          144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS----RKTKLVVIHHISN  219 (368)
Q Consensus       144 ~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~----~~~~~v~~~~~~n  219 (368)
                      .++.++.  ...++|.|+.....|.+..+    .++..+++++.++.+     |.+++++.+.    .+.++|+++...+
T Consensus       120 ~~i~~l~--~~~~~d~i~~D~~~Hasi~~----g~~ls~a~~~~f~Hn-----d~~~l~~l~~~~~~~~~~~iv~egvyS  188 (396)
T d2bwna1         120 ATLSTLR--VLFPGLIIYSDSLNHASMIE----GIKRNAGPKRIFRHN-----DVAHLRELIAADDPAAPKLIAFESVYS  188 (396)
T ss_dssp             HHHHHHH--HHSTTCEEEEETTCCHHHHH----HHHHSCCCEEEECTT-----CHHHHHHHHHHSCTTSCEEEEEESBCT
T ss_pred             HHHHHHh--cccCCCceeehhhhhhccch----hhhccccCceEeecc-----hHHHhhhHHhhhcccCceeEEEEeecc
Confidence            8888762  14688999999998888544    355668999998887     7887777664    2457999999999


Q ss_pred             ccccccCHHHHHHHHHhcCCEEEEecCCcCCcccc---------cCCCCCccEEEecCcCcCCCCcceEEEEcccccccC
Q 017640          220 MLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVV---------DVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAM  290 (368)
Q Consensus       220 ~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~---------~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l  290 (368)
                      ++|.+.|+++|.++|++||+++++|++|++|..--         .+ ....|++++|++|.||..| |++++++++++.+
T Consensus       189 mdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~-~~~~di~~gTlsKa~g~~G-g~v~~~~~~i~~l  266 (396)
T d2bwna1         189 MDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGL-MHRIDIFNGTLAKAYGVFG-GYIAASARMVDAV  266 (396)
T ss_dssp             TTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTC-GGGCSEEEEESSSTTCSCC-EEEEECHHHHHHH
T ss_pred             CcccccccHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCC-ceeeeeeeecccccccccc-cccchhHHHHHHH
Confidence            99999999999999999999999999999887621         12 1247999999999999987 8999999988877


Q ss_pred             CCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          291 PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       291 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +..-.+                  ..| ++.++...+.++..+++.+.....+..+++...+.+++...+.+.
T Consensus       267 ~~~~~~------------------~if-Stalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~  320 (396)
T d2bwna1         267 RSYAPG------------------FIF-STSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL  320 (396)
T ss_dssp             HHHCHH------------------HHT-SBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Hhhcch------------------hhh-cccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhc
Confidence            633211                  112 236667777788888888776445667788888888998888764

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=6.8e-21  Score=177.90  Aligned_cols=246  Identities=13%  Similarity=0.090  Sum_probs=189.0

Q ss_pred             CcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCC
Q 017640           79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD  158 (368)
Q Consensus        79 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd  158 (368)
                      ..|.+++++.++++.+...+..  .....+..+..+++++.+++++|.+   .+++++++++|+..++.++    .+++|
T Consensus        60 ~hp~v~~a~~~a~~~~g~~~~~--sr~~~g~~~~~~~lE~~lA~~~g~e---~al~~~SG~~An~~~i~~l----~~~~d  130 (401)
T d1fc4a_          60 NHPDLIAAAKAGMDSHGFGMAS--VRFICGTQDSHKELEQKLAAFLGME---DAILYSSCFDANGGLFETL----LGAED  130 (401)
T ss_dssp             TCHHHHHHHHHHHHHHCSCCCS--CHHHHCCBHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHTTHHHH----CCTTC
T ss_pred             CCHHHHHHHHHHHHHhCCCccc--ceeeccCcHHHHHHHHHHHHhhcCC---ceEEecchhhhhHHHHHHh----cCCCc
Confidence            4899999999999987654432  2222333577789999999999986   6789999999999999998    88999


Q ss_pred             EEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc------CceEEEEcccccccccccCHHHHHH
Q 017640          159 EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR------KTKLVVIHHISNMLASILPIEEIVH  232 (368)
Q Consensus       159 ~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~~n~tG~~~~l~~i~~  232 (368)
                      .|++....|++....    +...++++..++..     |.+++++.+..      +..+|+++++.++.|.+.|+++|.+
T Consensus       131 ~i~~d~~~h~s~~~G----~~~~~a~~~~~~~~-----d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~L~~l~~  201 (401)
T d1fc4a_         131 AIISDALNHASIIDG----VRLCKAKRYRYANN-----DMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCD  201 (401)
T ss_dssp             EEEEETTCCHHHHHH----HHTSCSEEEEECTT-----CHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHH
T ss_pred             EEEeCCcchHHHHcc----ccccCceEEEEcCC-----ChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhhhhHHHH
Confidence            999999999996554    34558888888766     77777776532      4478899999999999999999999


Q ss_pred             HHHhcCCEEEEecCCcCCccccc-------C-CCCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCcceeecc
Q 017640          233 WSHDVGAKVLVDACQSVPHMVVD-------V-QGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVF  304 (368)
Q Consensus       233 l~~~~g~~li~D~a~~~~~~~~~-------~-~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~  304 (368)
                      +|++||+++++|++|+.|.....       . ...++|+++++++|.+|..+.|++..++++++.++....+.       
T Consensus       202 L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg~~Gg~v~g~~~~~~~l~~~~~~~-------  274 (401)
T d1fc4a_         202 LADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAARKEVVEWLRQRSRPY-------  274 (401)
T ss_dssp             HHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSCEEEEECHHHHHHHHHHCHHH-------
T ss_pred             HHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccccCCcccccCCHHHHHHHHcCChhh-------
Confidence            99999999999999997765211       1 11258999999999886554699999999887665322110       


Q ss_pred             cCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          305 LDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       305 ~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                                 .+ ....+.....++..+++.+..  .+.+++++.++..++.+.+.+.
T Consensus       275 -----------~~-s~~l~p~~~~aa~~~l~~~~~--~~~~~~~l~~~~~~~~~~l~~~  319 (401)
T d1fc4a_         275 -----------LF-SNSLAPAIVAASIKVLEMVEA--GSELRDRLWANARQFREQMSAA  319 (401)
T ss_dssp             -----------HH-SCCCCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -----------hh-cCCCCHHHHHHHHhhhccccc--CHHHHHHHHHHHHHHHhhhccc
Confidence                       11 224555666667777776655  4788899999999999988876

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.86  E-value=1.2e-20  Score=174.95  Aligned_cols=257  Identities=12%  Similarity=0.082  Sum_probs=175.7

Q ss_pred             CcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCC
Q 017640           79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD  158 (368)
Q Consensus        79 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd  158 (368)
                      .+++-++++.+.++.-       .+..    .+..+++++.+++++|.+   .+++++|||+|+.+++.++   .+++||
T Consensus        10 ~~~~~~~~~~~~~~~~-------~~~~----G~~v~~~E~~la~~~g~~---~ai~~~sgt~Al~~al~al---~~~~gd   72 (376)
T d1mdoa_          10 MGAEELAAVKTVLDSG-------WITT----GPKNQELEAAFCRLTGNQ---YAVAVSSATAGMHIALMAL---GIGEGD   72 (376)
T ss_dssp             CCHHHHHHHHHHHHHT-------CCSS----SHHHHHHHHHHHHHHCCS---EEEEESCHHHHHHHHHHHT---TCCTTC
T ss_pred             CCHHHHHHHHHHHhcC-------CCcC----CHHHHHHHHHHHHHHCcC---eEEEeCCHHHHHHHHHHHh---CCCCCC
Confidence            4566677777777642       1111    234568999999999986   6788899999999999998   589999


Q ss_pred             EEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC-CCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhc
Q 017640          159 EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDV  237 (368)
Q Consensus       159 ~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~  237 (368)
                      +|++++.+|.++..++.    ..|+++++++++++ +.+|++.|+++++++|++|+++|.   .|...|+++|.++|+++
T Consensus        73 eVi~~~~~~~~~~~ai~----~~g~~pv~~d~~~~~~~~d~~~l~~~i~~~tkaIi~~h~---~G~~~~~~~i~~i~~~~  145 (376)
T d1mdoa_          73 EVITPSMTWVSTLNMIV----LLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVHY---AGAPADLDAIYALGERY  145 (376)
T ss_dssp             EEEEESSSCHHHHHHHH----HTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBCG---GGCCCCHHHHHHHHHHH
T ss_pred             EEEEecccccccccchh----ccccceeeecccccccCCCHHHHHHhcCCCCeEEEEeCC---CCCccchhHHHHHHHhc
Confidence            99999999999776654    44999999999865 889999999999999999998764   89999999999999999


Q ss_pred             CCEEEEecCCcCCccc--ccCCCCCccEEEecCcCcCCCCcceEEEEccc-ccccCCCcccCCcceeeccc----CCCCC
Q 017640          238 GAKVLVDACQSVPHMV--VDVQGLDADFLVASSHKMCGPTGIGFLFGKSD-LLSAMPPFLGGGEMISDVFL----DHSTF  310 (368)
Q Consensus       238 g~~li~D~a~~~~~~~--~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~-li~~l~~~~~g~~~~~~~~~----~~~~~  310 (368)
                      |++||+|++|++|...  ......+...+++..+|.++..+.|+++++++ +.+.++.....|........    ....+
T Consensus       146 ~i~vIeD~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~~g~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~  225 (376)
T d1mdoa_         146 GIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQA  225 (376)
T ss_dssp             TCCBCEECTTCTTCEETTEETTSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC-----------CC
T ss_pred             CceEEeccchhccCeeCCeecccccCccccCCCcCCCCCCCCCEEEEechhHHHHHHhhcccCCcccccccccccccccc
Confidence            9999999999998752  22334454455556679776555688887765 33444433322211100000    00000


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcC
Q 017640          311 ADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHN  365 (368)
Q Consensus       311 ~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g  365 (368)
                      ......+.....+..      +++-..+-..++.+.++.++++.++.+.|.++.+
T Consensus       226 ~~~~~g~n~~~~~~~------Aai~~~qL~~~~~~~~~r~~~~~~~~~~L~~~~~  274 (376)
T d1mdoa_         226 EVLAPGYKYNLPDLN------AAIALAQLQKLDALNARRAAIAAQYHQAMADLPF  274 (376)
T ss_dssp             EESSCCCBCCCCHHH------HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTSSC
T ss_pred             cchhcccccccchhh------hhhhhhhhhhhhHHHHHHhhhhhhhhhhcccccc
Confidence            001111111111111      1122222224677788889999999999987654

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=99.86  E-value=5.2e-21  Score=175.78  Aligned_cols=223  Identities=17%  Similarity=0.193  Sum_probs=173.0

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEE
Q 017640          106 SAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANL  185 (368)
Q Consensus       106 ~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v  185 (368)
                      ++...+....+++.++++-|.+   ..++++++..|+..++.++    +++||+|++++..|.+++..+....++.|+++
T Consensus        54 ~R~~nPT~~~LE~~la~LEg~~---~a~~~~SGmaAi~~~l~~l----~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~  126 (392)
T d1gc0a_          54 SRISNPTLNLLEARMASLEGGE---AGLALASGMGAITSTLWTL----LRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKL  126 (392)
T ss_dssp             ---CCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHH----CCTTCEEEEESSCCSHHHHHHHHTGGGGTCEE
T ss_pred             cCCCChHHHHHHHHHHHHhCCc---ceeehhhHHHHHHHHHHhh----ccCCCeeecccccchhhhhhhhhhhccCCccc
Confidence            3333456668999999999986   5577888889999999998    89999999999999999998888889999999


Q ss_pred             EEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEE
Q 017640          186 KFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLV  265 (368)
Q Consensus       186 ~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~  265 (368)
                      .+++..     |+++++++++++|++|+++.|.||+..+.|++.|+++||++|+++++|.+.+.+.. ...-++++|+++
T Consensus       127 ~~~d~~-----d~~~~~~ai~~~t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vvDnT~atP~~-~~Pl~~GaDivi  200 (392)
T d1gc0a_         127 RHVDMA-----DLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYL-QRPLELGADLVV  200 (392)
T ss_dssp             EEECTT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHH-CCGGGGTCSEEE
T ss_pred             ccCCcc-----CHHHHHHhCCCCCeEEEecccccceeeecchHHHHHHHHhcCCEEEEecCccCccc-cChHHhCCCEEE
Confidence            999876     89999999999999999999999999999999999999999999999999986554 122256899999


Q ss_pred             ecCcCcCCCCc---ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCH
Q 017640          266 ASSHKMCGPTG---IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGM  342 (368)
Q Consensus       266 ~s~~K~~g~~G---~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~  342 (368)
                      .|.+|++++.+   .|.++++++.+.+++-...                   ++...++++.....-+   ++-+++  +
T Consensus       201 hS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~-------------------~~~~G~~~~p~da~ll---~rgl~T--L  256 (392)
T d1gc0a_         201 HSATKYLSGHGDITAGIVVGSQALVDRIRLQGL-------------------KDMTGAVLSPHDAALL---MRGIKT--L  256 (392)
T ss_dssp             EETTTTTTCSSSCCCEEEEECHHHHHHHHHTHH-------------------HHHTCCCCCHHHHHHH---HHHHTT--H
T ss_pred             EecceeecCCcccccccccchhHHHHHHHHHHH-------------------HHccCCcCChhhHHHH---Hhcccc--H
Confidence            99999988777   8999999887765431110                   0111223333332222   222222  4


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcC
Q 017640          343 QKIHAYEVKWIICSIIVIQERHN  365 (368)
Q Consensus       343 ~~i~~~~~~l~~~l~~~l~~~~g  365 (368)
                      ....++..+.+..+.++|++++.
T Consensus       257 ~lRm~~~~~nA~~lA~~L~~hp~  279 (392)
T d1gc0a_         257 NLRMDRHCANAQVLAEFLARQPQ  279 (392)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCC
Confidence            44556677778888888887764

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.85  E-value=3e-21  Score=178.61  Aligned_cols=166  Identities=14%  Similarity=0.143  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEc-CCCCcccHHHHHHHHHHcCCEEEEEeCC
Q 017640          113 YELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILT-VAEHHSAIVPWQLVAQKTGANLKFLNLN  191 (368)
Q Consensus       113 ~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~-~~~~~s~~~~~~~~~~~~g~~v~~v~~~  191 (368)
                      .+++++..++.++..+.+++++++|+++|+..++.++    .++++.++++ .++|++...    .++..|++++  +.+
T Consensus        52 ~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al----~~~~~vi~~~~~~~~~~~~~----~~~l~g~~~v--~~~  121 (366)
T d2aeua1          52 AEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL----KPKKVIHYLPELPGHPSIER----SCKIVNAKYF--ESD  121 (366)
T ss_dssp             HHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH----CCSEEEEECSSSSCCTHHHH----HHHHTTCEEE--EES
T ss_pred             HHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHh----CCCCEEEEecCCCcchhHHH----HHHhcCCeEE--CCC
Confidence            4478888889898877668999999999999999887    4444444444 478888543    4566688754  444


Q ss_pred             CCCCCCHHHHHHhcccCceEEEEcccccccc-cccCHHHHHHHHHhcCCEEEEecCCcCCcccccC----CCCCccEEEe
Q 017640          192 DDESPDLDKLKEMLSRKTKLVVIHHISNMLA-SILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDV----QGLDADFLVA  266 (368)
Q Consensus       192 ~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG-~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~----~~~~~d~~~~  266 (368)
                           |+++|+++++++|++|++++++||++ ...++++|+++|++||+++++|++|+.+......    ...+.|++++
T Consensus       122 -----d~e~l~~~i~~~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~di~~~  196 (366)
T d2aeua1         122 -----KVGEILNKIDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVT  196 (366)
T ss_dssp             -----CHHHHHTTCCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEE
T ss_pred             -----CHHHHHHhcCCCceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhhcCceEEEe
Confidence                 89999999999999999999988754 5667999999999999999999999854432111    1347899999


Q ss_pred             cCcCcCCCCcceEEEEcccccccCCCc
Q 017640          267 SSHKMCGPTGIGFLFGKSDLLSAMPPF  293 (368)
Q Consensus       267 s~~K~~g~~G~G~l~~~~~li~~l~~~  293 (368)
                      |+||.+++.++||+++++++++.++..
T Consensus       197 S~sK~~~g~~~G~i~~~~~~i~~~~~~  223 (366)
T d2aeua1         197 STDKLMEGPRGGLLAGKKELVDKIYIE  223 (366)
T ss_dssp             ETTSSSSSCSCEEEEEEHHHHHHHHHH
T ss_pred             cccccccccceeEEEecHHHHHHHHHH
Confidence            999988877789999999999887644

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.85  E-value=5.3e-21  Score=182.47  Aligned_cols=236  Identities=14%  Similarity=0.055  Sum_probs=166.9

Q ss_pred             HHHHHHHHHHHHHcCCCCCCcEEEe-CCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          111 DEYELARKKVAAFINASDSGEIVFT-KNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       111 ~~~~~~r~~la~~~~~~~~~~v~~t-~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      ..+.++++.+|+++|++   ..+|+ +|+|.++..++.++    +++||+|+++..+|.|++..+..+. ..+..+..++
T Consensus        66 ~~i~eae~~~A~~~ga~---~a~f~~~Gtt~~n~a~i~a~----~~~gd~Vi~~~~~H~Sv~~~~~~l~-~~~~~~~~~~  137 (462)
T d1c4ka2          66 GPAVAAEKHAARVYNAD---KTYFVLGGSSNANNTVTSAL----VSNGDLVLFDRNNHKSVYNSALAMA-GGRPVYLQTN  137 (462)
T ss_dssp             THHHHHHHHHHHHTTCS---EEEEESSHHHHHHHHHHHHH----CCTTCEEEEETTCCHHHHHHHTTTT-CCEEEEECEE
T ss_pred             HHHHHHHHHHHHHhCCC---eEEEECCchHHHHHHHHHHh----cCCCCeEEecccchHHHHHHHHHHh-cCCceeeecc
Confidence            45678999999999986   44555 55566666777777    8999999999999999876554432 1233344444


Q ss_pred             CCCCC--------CCCHHH---------HHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcc
Q 017640          190 LNDDE--------SPDLDK---------LKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM  252 (368)
Q Consensus       190 ~~~~~--------~~d~~~---------l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~  252 (368)
                      .++.+        .++.+.         +++++..++..+++.+..|..|.+.|+++|+++|++||+++++|++|+.+..
T Consensus       138 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~  217 (462)
T d1c4ka2         138 RNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQ  217 (462)
T ss_dssp             ECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGG
T ss_pred             cccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhcccc
Confidence            44443        223333         3344455677777778888999999999999999999999999999997765


Q ss_pred             cccC-------------CCCCccEEEecCcCcCCCCc-ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCC
Q 017640          253 VVDV-------------QGLDADFLVASSHKMCGPTG-IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFE  318 (368)
Q Consensus       253 ~~~~-------------~~~~~d~~~~s~~K~~g~~G-~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~  318 (368)
                      ..+.             ...++|++++|+||++|+.+ .+++..++..+........ ......          ....++
T Consensus       218 ~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll~~~~~~~~~~~~~~~-~~~~~~----------~~~~~~  286 (462)
T d1c4ka2         218 FIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCD-HKHFNN----------SFNLFM  286 (462)
T ss_dssp             SSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCC-HHHHHH----------HHHHHS
T ss_pred             ccCcCCcchhhccccccccCCccEEEEecCcccccccceEEEEeccccccccchhhh-HHHHHH----------hhhhcc
Confidence            3221             12246999999999888665 5555566665543322111 000000          012356


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcC
Q 017640          319 AGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHN  365 (368)
Q Consensus       319 ~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g  365 (368)
                      .+++++..+.++..+..++...+.+++.++..+++.++++++.++.+
T Consensus       287 t~sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~  333 (462)
T d1c4ka2         287 STSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGS  333 (462)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            77999999999999999888776788888999999999999988755

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=99.84  E-value=4.4e-20  Score=169.60  Aligned_cols=224  Identities=18%  Similarity=0.190  Sum_probs=175.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCC
Q 017640          104 FLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGA  183 (368)
Q Consensus       104 ~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~  183 (368)
                      .+++...+..+.+++.++.+-|.+   ..++++++..|+..++.++    +++||+|++.+..|.+++..+.....+.|+
T Consensus        56 ~Y~R~~nPT~~~LE~~la~LEgg~---~a~~~sSGmaAi~~~l~~l----l~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi  128 (397)
T d1y4ia1          56 IYTRLGNPTTDALEKKLAVLERGE---AGLATASGISAITTTLLTL----CQQGDHIVSASAIYGCTHAFLSHSMPKFGI  128 (397)
T ss_dssp             CCCTTSCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHH----CCTTCEEEEESSSCHHHHHHHHTHHHHTTC
T ss_pred             eeeCCCCHHHHHHHHHHHHHhCCc---cceeehHHHHHHHHHHhhc----cCCCCeeeeecccccccchhhhcccCCCce
Confidence            344444566778999999999986   4477788889999999998    999999999999999999888888889999


Q ss_pred             EEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccE
Q 017640          184 NLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADF  263 (368)
Q Consensus       184 ~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~  263 (368)
                      ++.+++..     |++.++++++++|++|+++.|.||+..+.|+++|+++||++|+++++|.+.+.+... ..-++++|+
T Consensus       129 ~~~~vd~~-----d~~~~~~~i~~~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvDnT~atP~~~-~Pl~~GaDi  202 (397)
T d1y4ia1         129 NVRFVDAG-----KPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQ-QPLQLGADI  202 (397)
T ss_dssp             EEEEECTT-----SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC-CGGGGTCSE
T ss_pred             EeeccCCC-----CHHHHHHhcCCCCcEEEecCCcccceeecccHHHHHHhhcCCceEEecCcccCcccC-cchhcCCCE
Confidence            99999876     899999999999999999999999999999999999999999999999998876552 223568999


Q ss_pred             EEecCcCcCCCCc---ceEEEEcccccccCC--CcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 017640          264 LVASSHKMCGPTG---IGFLFGKSDLLSAMP--PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS  338 (368)
Q Consensus       264 ~~~s~~K~~g~~G---~G~l~~~~~li~~l~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~  338 (368)
                      ++.|..|++++.+   +|.++++++.+.+.+  ....                     ...++++....+-+   ++=++
T Consensus       203 vihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~---------------------~~G~~l~p~~a~l~---~rgl~  258 (397)
T d1y4ia1         203 VVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKD---------------------ITGGCMSPFNAWLT---LRGVK  258 (397)
T ss_dssp             EEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHH---------------------TTCCCCCHHHHHHH---HHHHT
T ss_pred             EEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHh---------------------CcCCcCCHHHHHHH---HcCcC
Confidence            9999999888777   899999988765432  1110                     11123333222222   22233


Q ss_pred             HhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          339 TIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       339 ~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      +  +....++..+.+..+.++|++++.+
T Consensus       259 T--L~lRm~~~~~nA~~lA~~L~~hp~V  284 (397)
T d1y4ia1         259 T--LGIRMERHCENALKIARFLEGHPSI  284 (397)
T ss_dssp             T--HHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred             c--HHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            3  4444566777888888888877653

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=99.84  E-value=3.1e-20  Score=173.87  Aligned_cols=210  Identities=14%  Similarity=-0.016  Sum_probs=149.8

Q ss_pred             CCeEEeccCC----CC--CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC-----CCCcEEE
Q 017640           66 KKLVYLDNAA----TS--QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-----DSGEIVF  134 (368)
Q Consensus        66 ~~~i~l~~~~----~~--~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-----~~~~v~~  134 (368)
                      ++.|+|..|.    .+  +..+.|+++..+....-.  .+  .    |.......++|+++++++...     .++.++.
T Consensus        28 ~~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~--~~--~----Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~   99 (401)
T d7aata_          28 SKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKM--DK--E----YLPIAGLADFTRASAELALGENSEAFKSGRYVT   99 (401)
T ss_dssp             TTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTC--CC--C----CCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEE
T ss_pred             CCcEEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCC--CC--C----CCCCCCCHHHHHHHHHHHhccCCcccCcCceEE
Confidence            4568888873    22  456888888777665421  11  1    111233447888888876443     2235554


Q ss_pred             eCC-----HHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC--CCCCCHHHHHHhcc-
Q 017640          135 TKN-----ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLS-  206 (368)
Q Consensus       135 t~g-----~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~-  206 (368)
                      +.+     +..++..+++++    +++||+|++++|.|+..    ...++..|++++.+++.+  ++..|++.+++.+. 
T Consensus       100 ~~~~~~~g~~~~~~~~~~~l----~~pGd~Vlv~~P~y~~y----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (401)
T d7aata_         100 VQGISGTGSLRVGANFLQRF----FKFSRDVYLPKPSWGNH----TPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISK  171 (401)
T ss_dssp             EEEEHHHHHHHHHHHHHHHH----CTTCCEEEEEESCCTTH----HHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTT
T ss_pred             eccchHHHHHHHHHHhhHhh----cCCCceEEEecCCCcch----hhHHHHcCCeEEEEeccccccccccHHHHHHHHhc
Confidence            432     224667777777    99999999999999884    445566799999999853  36678888877764 


Q ss_pred             --cCceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCccc---------ccC-CCCCccEEEecCcCc
Q 017640          207 --RKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV---------VDV-QGLDADFLVASSHKM  271 (368)
Q Consensus       207 --~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~~---------~~~-~~~~~d~~~~s~~K~  271 (368)
                        ++++++++++++||||.+++   +++|.++|++|++++|.|++|..-...         ... ......+++.|++|.
T Consensus       172 ~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~  251 (401)
T d7aata_         172 IPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKN  251 (401)
T ss_dssp             SCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTT
T ss_pred             CCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEecccc
Confidence              57899999999999999999   779999999999999999999832210         001 112345777899999


Q ss_pred             CCCCc--ceEEEEcccccccCC
Q 017640          272 CGPTG--IGFLFGKSDLLSAMP  291 (368)
Q Consensus       272 ~g~~G--~G~l~~~~~li~~l~  291 (368)
                      ++.+|  +|+++++.+.++...
T Consensus       252 ~~~~G~RiG~~~~~~~~~~~~~  273 (401)
T d7aata_         252 MGLYGERAGAFTVICRDAEEAK  273 (401)
T ss_dssp             SCCGGGCEEEEEEECSSHHHHH
T ss_pred             ceeeccccceeecchHHHHHHH
Confidence            99888  999999998776543

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=3.4e-20  Score=175.92  Aligned_cols=225  Identities=10%  Similarity=0.065  Sum_probs=166.9

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHH-HHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEE
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLV-AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL  188 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~-~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v  188 (368)
                      .++..++.+.+++++|.+.....++|+|+|++..++ +.++ +....+++.|+++...|++...+    +...|.+++.|
T Consensus        93 ~~le~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~-~~~~~~~~~vi~~~~~H~s~~~a----~~~~g~~~~~v  167 (445)
T d3bc8a1          93 NKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTL-RHKRPKAKYIIWPRIDQKSCFKS----MVTAGFEPVVI  167 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHH-HHHCTTCCEEEEECCCCHHHHHH----HHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHH-HHhCCCCCEEEEcCcccHHHHHH----HHHcCCeeEEE
Confidence            456667888999999998665778888887655443 3333 11245778999999999986544    45569998888


Q ss_pred             eC---CCCCCCCHHHHHHhccc----CceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCccc------cc
Q 017640          189 NL---NDDESPDLDKLKEMLSR----KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMV------VD  255 (368)
Q Consensus       189 ~~---~~~~~~d~~~l~~~l~~----~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~------~~  255 (368)
                      +.   ++++.+|+++|++++++    ++.+|+++++++++|.+.|+++|+++|++||+++++|++|+.+...      .+
T Consensus       168 ~~~~~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~  247 (445)
T d3bc8a1         168 ENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQG  247 (445)
T ss_dssp             CCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHH
T ss_pred             EeeccCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhccccchhc
Confidence            64   45689999999998853    6789999999999999999999999999999999999999976532      12


Q ss_pred             CCCCCccEEEecCcC-cCCCCcceEEEEccc-ccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 017640          256 VQGLDADFLVASSHK-MCGPTGIGFLFGKSD-LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAA  333 (368)
Q Consensus       256 ~~~~~~d~~~~s~~K-~~g~~G~G~l~~~~~-li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~a  333 (368)
                      ....++|++++|+|| +.+|.|+|+++++++ .++.+.+...+                        +.+....+.+..+
T Consensus       248 ~~~~~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~  303 (445)
T d3bc8a1         248 ARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPG------------------------RASASPSLDVLIT  303 (445)
T ss_dssp             HHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSCS------------------------CBCSHHHHHHHHH
T ss_pred             cCcCCcceEEecCccccccCCCCceeeeCChHHHHHHHHHHhh------------------------cccCcchHHHHHH
Confidence            222358999999999 566888889888764 33333322211                        2222334445566


Q ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          334 IDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       334 l~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +..+...+...+.++..+++.++.+.|.++
T Consensus       304 ~~~~g~~~~~~~~~~~~~~~~~~~~~L~~l  333 (445)
T d3bc8a1         304 LLSLGCSGYRKLLKERKEMFVYLSTQLKKL  333 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhcchhhHHHHHHHHHHHHHHHHHH
Confidence            666777778888888889999999888765

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=99.82  E-value=3.5e-20  Score=171.05  Aligned_cols=269  Identities=14%  Similarity=0.148  Sum_probs=181.6

Q ss_pred             cCCCCCCcHHHHHHHHHHHHHhhccCCCCcc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHH-HHH
Q 017640           73 NAATSQKPIAVLKALQNYYEAYNSNVHRGIH---FLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV-AYS  148 (368)
Q Consensus        73 ~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~-~~~  148 (368)
                      ..++..+|++|++++.+.+..+.. ...+.+   +.+..+.+.++++|+.|+++++.++++.|+|++|++++...+ +..
T Consensus         8 ~pGP~~vp~~V~eam~~~~~~~~~-~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~   86 (361)
T d2c0ra1           8 NAGPAALPLEVLERAQAEFVDYQH-TGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMN   86 (361)
T ss_dssp             CSSSCCCCHHHHHHHHHTSSSSTT-SSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHH
T ss_pred             CCCCcCCCHHHHHHHHHHHhhhcc-cCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc
Confidence            446668899999999988765432 222222   235678899999999999999998766889888776655444 444


Q ss_pred             ccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHH
Q 017640          149 WGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIE  228 (368)
Q Consensus       149 ~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~  228 (368)
                      +    ..+|+.+++....+  ....+..+++..|..+..+..+....++++.+++.+..++ .   .+.+|.||...|++
T Consensus        87 l----~~~~~~~l~~~~g~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~v~~~tg~~~~~~  156 (361)
T d2c0ra1          87 F----LKEGQTANYVMTGS--WASKALKEAKLIGDTHVAASSEASNYMTLPKLQEIQLQDN-A---AYLHLTSNETIEGA  156 (361)
T ss_dssp             H----CCTTCEEEEEECSH--HHHHHHHHHHHHSCEEEEEECGGGTTCSCCCGGGCCCCTT-E---EEEEEESEETTTTE
T ss_pred             c----ccCCCceEEEeech--hhhhhhhhhhhcCceeeeeccccccccchhhhhhhcccCc-c---eEEEEecccceecc
Confidence            4    78888887776443  3446888889999999999988888888888888776654 2   34456799999999


Q ss_pred             HHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCcceeecccCCC
Q 017640          229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHS  308 (368)
Q Consensus       229 ~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~  308 (368)
                      +|.++|+++|+++++|+++++|..+++.+++  |+.+.+.+|.++++|.+.+++..+.+....+............    
T Consensus       157 ~i~~~~~~~~al~~vDavss~g~~~id~~~~--di~~~s~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  230 (361)
T d2c0ra1         157 QFKAFPDTGSVPLIGDMSSDILSRPFDLNQF--GLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDTYV----  230 (361)
T ss_dssp             ECSSCCCCTTSCEEEECTTTTTSSCCCGGGC--SEEEEETTTTTCCSSCEEEEEEGGGSSSCCTTSCGGGCHHHHH----
T ss_pred             eEEEeeccCCceEEEEeeccccccccccccc--eeEEEecccccccccCcEEEEEhHHhhhCcccccccccccccc----
Confidence            9999999999999999999999999998875  5556677898777664444444443333332222111110000    


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHhh
Q 017640          309 TFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG-MQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       309 ~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g-~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                         .  ......+++......+..+.......+ .....++.+..+..........
T Consensus       231 ---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (361)
T d2c0ra1         231 ---K--NNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQS  281 (361)
T ss_dssp             ---H--TTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             ---c--cccccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhc
Confidence               0  111123455555555555555555443 4456666666666666655543

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.82  E-value=2.5e-19  Score=164.10  Aligned_cols=217  Identities=18%  Similarity=0.153  Sum_probs=165.9

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      .+..+.++++++.+-|.+   ..+.+++|..|+.. +.++    +++||+|++....|.+++..+.....+.|+++.++.
T Consensus        48 nPt~~~le~~la~LE~~~---~a~~fsSGMaAisa-ll~l----l~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d  119 (380)
T d1ibja_          48 NPTRDALESLLAKLDKAD---RAFCFTSGMAALSA-VTHL----IKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVN  119 (380)
T ss_dssp             CHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHH-HHTT----SCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEEC
T ss_pred             ChHHHHHHHHHHHHcCCc---eEEehhhHHHHHHH-HHHh----hCCCCEEEEEecccccccchhhhhhccccccccccC
Confidence            455668999999999986   45677777888864 4455    899999999999999999888888888999999998


Q ss_pred             CCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCc
Q 017640          190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH  269 (368)
Q Consensus       190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~  269 (368)
                      ..     |++++++++++++++|+++.|.||+..+.|+++|+++||++|+++++|.+.+.+.. ...-++++|+++.|.+
T Consensus       120 ~~-----~~~~~~~ai~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVDnT~atP~~-~~Pl~~GaDiVvhS~T  193 (380)
T d1ibja_         120 TT-----KLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVL-SRPLELGADIVMHSAT  193 (380)
T ss_dssp             TT-----SHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTT-CCGGGTTCSEEEEETT
T ss_pred             cc-----hHHHHHHHhccCccEEEeccccccccccccHHHHHHHHHHcCCeEEeecccccccc-ccccccCCCEEEeccc
Confidence            76     89999999999999999999999999999999999999999999999999886654 2222468999999999


Q ss_pred             CcCCCCc---ceEEEEccc-ccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 017640          270 KMCGPTG---IGFLFGKSD-LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI  345 (368)
Q Consensus       270 K~~g~~G---~G~l~~~~~-li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i  345 (368)
                      |++++.+   .|.++++++ +.+.++......                     .++++.....-+   ++-+++  +...
T Consensus       194 Kyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~---------------------G~~l~p~~a~ll---~rgl~T--l~lR  247 (380)
T d1ibja_         194 KFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSE---------------------GSGLAPFDCWLC---LRGIKT--MALR  247 (380)
T ss_dssp             TTTTCSSCCCCEEEEECSHHHHHHHHHHHHHT---------------------TCBCCHHHHHHH---HHHHTT--HHHH
T ss_pred             ceeccccCccccccccchhhHHHHHHhhcccc---------------------CCcCCHHHHHHH---Hhcchh--hhhh
Confidence            9988777   788777754 334333222111                     113333322222   222222  4555


Q ss_pred             HHHHHHHHHHHHHHHHhhcCC
Q 017640          346 HAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       346 ~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      .++..+.+..+.++|++++.+
T Consensus       248 m~~~~~nA~~lA~~L~~hp~V  268 (380)
T d1ibja_         248 IEKQQENARKIAMYLSSHPRV  268 (380)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHHHHHHHHhCCCe
Confidence            577778888888888887654

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.81  E-value=2.7e-19  Score=169.14  Aligned_cols=223  Identities=11%  Similarity=0.091  Sum_probs=168.4

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      .....++...+.+++|.+.. ..+...|+++++.+++.+.+.  ..+++.|+++...|+++...    +...|.+++.|+
T Consensus       112 ~~~~~~~~~~~~~~~g~~~~-~~~~~~~t~~~~~~~l~a~r~--~~~~~~vi~s~~~H~s~~k~----~~~~g~~~~~v~  184 (434)
T d2z67a1         112 YALTNKILESFFKQLGLNVH-AIATPISTGMSISLCLSAARK--KYGSNVVIYPYASHKSPIKA----VSFVGMNMRLVE  184 (434)
T ss_dssp             HHHHHHHHHHHHHHTTCCCE-EEEESSCHHHHHHHHHHHHHH--HHCCCEEEEECCCCHHHHHH----HHHTTCEEEEEC
T ss_pred             HHHHHHHHHHHHHhcCCCcc-eeecCcHHHHHHHHHHHHHHH--hhcCceEEEeccCCHHHHHH----HHHhCCcceEEE
Confidence            34455667778899998753 444556666677777776531  34788999999999986543    455699888876


Q ss_pred             C---CCCCCCCHHHHHHhccc-----CceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcc-----cccC
Q 017640          190 L---NDDESPDLDKLKEMLSR-----KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM-----VVDV  256 (368)
Q Consensus       190 ~---~~~~~~d~~~l~~~l~~-----~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~-----~~~~  256 (368)
                      .   ++++.+|+++|++++++     ++.+|+++++++++|.+.|+++|+++|++||+++++|++|+.+..     +...
T Consensus       185 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~  264 (434)
T d2z67a1         185 TVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKA  264 (434)
T ss_dssp             CEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHH
T ss_pred             eecCCCccCCCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhcccccccc
Confidence            4   34478999999999964     678899999999999999999999999999999999999986542     2223


Q ss_pred             CCCCccEEEecCcCc-CCCCcceEEEEccc-ccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 017640          257 QGLDADFLVASSHKM-CGPTGIGFLFGKSD-LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAI  334 (368)
Q Consensus       257 ~~~~~d~~~~s~~K~-~g~~G~G~l~~~~~-li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al  334 (368)
                      ...++|++++|+||. .+|.|+|+++.+++ +++.+.+..                        .++.+......+..++
T Consensus       265 ~~~~~D~~~~s~hK~l~~~~g~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~a~l  320 (434)
T d2z67a1         265 FKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSY------------------------PGRASATPVVNTLVSL  320 (434)
T ss_dssp             HTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTS------------------------CSCBCSHHHHHHHHHH
T ss_pred             ccCCcceEEEcCccccccCCCccccccCcHHHHHHHHhhc------------------------ccccccchHHHHHHHH
Confidence            446899999999994 56788888887764 444443322                        2233444556666777


Q ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          335 DYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       335 ~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      ..+...|...+.++..++++++.+.|+++
T Consensus       321 ~~~~~~g~~~~~~~~~~~a~~l~~~L~~l  349 (434)
T d2z67a1         321 LSMGSKNYLELVKNQKNSKKLLDELLNDL  349 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcchhHHHHHHHHHHHHHHHHHHh
Confidence            77888788999999999999999988875

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=6.6e-19  Score=161.38  Aligned_cols=217  Identities=20%  Similarity=0.243  Sum_probs=167.2

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      .+....++++++++-|..   ..+.++++..|+..++.++    +++||.|+++...|.+++..+....++.|.++.++.
T Consensus        49 nPt~~~le~~la~LEgg~---~a~~~sSGMaAi~~~l~~l----~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d  121 (384)
T d1cs1a_          49 NPTRDVVQRALAELEGGA---GAVLTNTGMSAIHLVTTVF----LKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD  121 (384)
T ss_dssp             CHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHH----CCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEEC
T ss_pred             CHHHHHHHHHHHHHhCCC---ceEEecChHHHHHHHHhhc----ccccceecccccccchhhhhhhhhhccccccccccc
Confidence            455668999999999976   5578888889999999998    899999999999999999888888888899998887


Q ss_pred             CCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCc
Q 017640          190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH  269 (368)
Q Consensus       190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~  269 (368)
                      ..     |.+.+++++.+++++|+++.|.||+..+.|+++|+++||++|+++++|.+.+.+.. ...-++++|+++.|.+
T Consensus       122 ~~-----d~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~i~~ia~~~g~~~vVDNT~atP~~-~~Pl~~GaDiVvhS~T  195 (384)
T d1cs1a_         122 QG-----DEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPAL-QNPLALGADLVLHSCT  195 (384)
T ss_dssp             TT-----CHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTT-CCGGGGTCSEEEEETT
T ss_pred             CC-----CHHHHHhhccccccEEEEeccccccceeccHHHHhhhhhhcCcEEEEeccccCccc-ccccccCCCEEEEccc
Confidence            65     88999999999999999999999999999999999999999999999999986654 2223568999999999


Q ss_pred             CcCCCCc---ceEEEEccccc-ccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 017640          270 KMCGPTG---IGFLFGKSDLL-SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI  345 (368)
Q Consensus       270 K~~g~~G---~G~l~~~~~li-~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i  345 (368)
                      |++++.|   .|.++.+.+.+ +.+.......                     .++.+....+   ..++=+++  +...
T Consensus       196 Kyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~---------------------G~~~~p~~a~---ll~rgL~T--L~lR  249 (384)
T d1cs1a_         196 KYLNGHSDVVAGVVIAKDPDVVTELAWWANNI---------------------GVTGGAFDSY---LLLRGLRT--LVPR  249 (384)
T ss_dssp             TTTTCSSCCCCEEEEESSHHHHHHHHHHHHHH---------------------TCBCCHHHHH---HHHHHHTT--HHHH
T ss_pred             cccccCCCcccccccCCchhhhhhhhhhhhhh---------------------hhccccccHH---HHhhccch--hHHH
Confidence            9998887   78777765433 3332111100                     1122222222   12222232  4444


Q ss_pred             HHHHHHHHHHHHHHHHhhcC
Q 017640          346 HAYEVKWIICSIIVIQERHN  365 (368)
Q Consensus       346 ~~~~~~l~~~l~~~l~~~~g  365 (368)
                      .++..+.+..+.++|++++.
T Consensus       250 m~~~~~nA~~lA~~L~~hp~  269 (384)
T d1cs1a_         250 MELAQRNAQAIVKYLQTQPL  269 (384)
T ss_dssp             HHHHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHHHhcccCCc
Confidence            56677888888888887764

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=99.80  E-value=1.6e-19  Score=166.31  Aligned_cols=273  Identities=12%  Similarity=0.026  Sum_probs=182.7

Q ss_pred             EEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHH
Q 017640           69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIH---FLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV  145 (368)
Q Consensus        69 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~  145 (368)
                      ||....++.++|++|++++.+.+..+... ..+..   +.+..+.+.++++|+.+++++++++++.|++++|+++++..+
T Consensus         4 ~~nF~pGP~~~p~~V~~a~~~~~~~~~~~-~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~~   82 (360)
T d1w23a_           4 VFNFNAGPSALPKPALERAQKELLNFNDT-QMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTM   82 (360)
T ss_dssp             CEECCSSSCCCCHHHHHHHHHTSSSSTTS-SSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred             eeEeCCCCcCCCHHHHHHHHHHHHhhccc-CccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHH
Confidence            67666778889999999999877554321 12221   235667889999999999999998776789999988887766


Q ss_pred             HHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEccccccccccc
Q 017640          146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASIL  225 (368)
Q Consensus       146 ~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~  225 (368)
                      ....   ...+++.+++....+++..  +...++..+...+......+...+++.++..+..    +.+.+..|.||...
T Consensus        83 ~~~~---~~~~~~~v~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~tg~~~  153 (360)
T d1w23a_          83 LPMN---LLTKGTIGNYVLTGSWSEK--ALKEAKLLGETHIAASTKANSYQSIPDFSEFQLN----ENDAYLHITSNNTI  153 (360)
T ss_dssp             HHHH---HCCTTCEEEEEECSHHHHH--HHHHHHTTSEEEEEEECGGGTSCSCCCGGGCCCC----TTEEEEEEESEETT
T ss_pred             HHhh---hcccCcccceeeccchhhh--hHHHHHHhhhcceeeccccccccchhhhhhcccc----cccceeEecCCccc
Confidence            6655   3678888888776665543  5555677777776666554333344444443322    22446667799999


Q ss_pred             CHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCcceeeccc
Q 017640          226 PIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFL  305 (368)
Q Consensus       226 ~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~  305 (368)
                      |+++|.++|+++|+++++|+++++|+.++|++++++|+++++.+|++++ |.|+++.++...+...+...++....... 
T Consensus       154 ~~~~i~~~~~~~g~l~ivDavqs~g~~~id~~~~~vd~~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  231 (360)
T d1w23a_         154 YGTQYQNFPEINHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNLGPSG-VTVVIVKKDLLNTKVEQVPTMLQYATHIK-  231 (360)
T ss_dssp             TTEECSSCCCCCSSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTSCTT-CEEEEEEHHHHCSCCTTCCGGGCHHHHHH-
T ss_pred             cceeeeeccccceeeEEeeccccccccccccccccceEEeeccccccCC-cceeeEechhhhcccccCCcchhhhhhhh-
Confidence            9999999999999999999999999999999999888888887775444 45777776665444333222211111000 


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHh
Q 017640          306 DHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGM-QKIHAYEVKWIICSIIVIQE  362 (368)
Q Consensus       306 ~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~-~~i~~~~~~l~~~l~~~l~~  362 (368)
                               ......++......+....+......+. ..+.++..............
T Consensus       232 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (360)
T d1w23a_         232 ---------SDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDE  280 (360)
T ss_dssp             ---------TTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ---------hhhhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhh
Confidence                     1122346666666666666666666543 44445555555555544443

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=1.4e-18  Score=159.95  Aligned_cols=222  Identities=12%  Similarity=0.068  Sum_probs=172.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCE
Q 017640          105 LSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGAN  184 (368)
Q Consensus       105 ~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~  184 (368)
                      +++...+..+.+++.++++-|..   ..+.+++|..|+..++.++    +++||+|++...-|.+++..+.....+.|++
T Consensus        52 Y~R~~nPt~~~le~~la~LEg~~---~a~~~~SGMaAi~~~l~~l----~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~  124 (391)
T d1cl1a_          52 YGRRGTLTHFSLQQAMCELEGGA---GCVLFPCGAAAVANSILAF----IEQGDHVLMTNTAYEPSQDFCSKILSKLGVT  124 (391)
T ss_dssp             CTTTCCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHH----CCTTCEEEEETTSCHHHHHHHHHTGGGGTCE
T ss_pred             eECCCChhHHHHHHHHHHHhCCc---cEEEeccccceeeehhhcc----cCCCCeEEEecccccchhhhhhhcccccccc
Confidence            34444566778999999999985   5688888899999999988    8999999999999999998888888899999


Q ss_pred             EEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhc--CCEEEEecCCcCCcccccCCCCCcc
Q 017640          185 LKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDV--GAKVLVDACQSVPHMVVDVQGLDAD  262 (368)
Q Consensus       185 v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~--g~~li~D~a~~~~~~~~~~~~~~~d  262 (368)
                      +.++...     |.+++++++++++++|+++.+.||+..+.|+++|+++|+++  |+++++|.+.+.+.. .+.-+++.|
T Consensus       125 ~~~~d~~-----d~~~~~~~i~~~t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~~~vVDnT~atP~~-~~Pl~~GaD  198 (391)
T d1cl1a_         125 TSWFDPL-----IGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVL-FKALDFGID  198 (391)
T ss_dssp             EEEECTT-----CGGGGGGTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTS-SCGGGGTCS
T ss_pred             cccccCc-----cccccccccccccceeeecccCcccccccccHHHHHHHHhccCCcEEEEeccccchhh-hcccccccc
Confidence            9999866     78999999999999999999999999999999999999774  999999999987655 222346899


Q ss_pred             EEEecCcCcCCCCc---ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 017640          263 FLVASSHKMCGPTG---IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST  339 (368)
Q Consensus       263 ~~~~s~~K~~g~~G---~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~  339 (368)
                      +++.|.+|++++.+   .|.++.+++..+.+.....                     ...++.+.....-+   ++-+++
T Consensus       199 ivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~---------------------~~G~~~~p~~a~ll---~rgl~T  254 (391)
T d1cl1a_         199 VSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAY---------------------LMGQMVDADTAYIT---SRGLRT  254 (391)
T ss_dssp             EEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHH---------------------HTTCCCCHHHHHHH---HHHHTT
T ss_pred             eEEeecchhccccccccccceeccccccccchhhhh---------------------cccccCCchhhhhh---hccchh
Confidence            99999999988777   7888888877665442211                     11123333222212   222222


Q ss_pred             hCHHHHHHHHHHHHHHHHHHHHhhcC
Q 017640          340 IGMQKIHAYEVKWIICSIIVIQERHN  365 (368)
Q Consensus       340 ~g~~~i~~~~~~l~~~l~~~l~~~~g  365 (368)
                        +....++..+.+..+.++|++++.
T Consensus       255 --L~lR~~~~~~nA~~vA~~L~~hp~  278 (391)
T d1cl1a_         255 --LGVRLRQHHESSLKVAEWLAEHPQ  278 (391)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             --HHHHHHHHHHHHHHHHHHHHhccc
Confidence              444456677788888888887764

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=99.80  E-value=2.7e-18  Score=154.93  Aligned_cols=215  Identities=16%  Similarity=0.185  Sum_probs=165.2

Q ss_pred             HHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCC
Q 017640          115 LARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDE  194 (368)
Q Consensus       115 ~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~  194 (368)
                      .++++++.+-|..   ..+.+++|..|+..++.++    +++||+|+++..-|.+++..+....++.|+++.+++..   
T Consensus         2 aLE~~la~Leg~~---~a~~~sSGMaAi~~~l~~l----l~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~---   71 (331)
T d1pffa_           2 ALEGKIAKLEHAE---ACAATASGMGAIAASVWTF----LKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMA---   71 (331)
T ss_dssp             HHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHH----CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT---
T ss_pred             HHHHHHHHHhCCC---eEEEECCHHHHHHHHHHHH----hCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEeccc---
Confidence            5788999999876   5577788899999999888    89999999999999999999999899999999999876   


Q ss_pred             CCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHH-HhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCC
Q 017640          195 SPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWS-HDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCG  273 (368)
Q Consensus       195 ~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~-~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g  273 (368)
                        |++.+++++++++++|+++.+.||+..+.+++++.+++ +++|+++++|.+.+.+.. .+.-++++|+++.|.+|+++
T Consensus        72 --d~~~~~~~i~~~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~~-~~pl~~GaDiVv~S~TKy~~  148 (331)
T d1pffa_          72 --VPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPIL-TNPLDLGVDIVVHSATKYIN  148 (331)
T ss_dssp             --STTHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHH-CCGGGGTCSEEEEETTTTTS
T ss_pred             --chhhHhhhcccccceeeeecccccccccccchhhhhhhhcccCceEEeecccccccc-ccccccCCCEEEecchhhcC
Confidence              88999999999999999999999999999999999985 568999999999885443 22335679999999999988


Q ss_pred             CCc---ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH
Q 017640          274 PTG---IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEV  350 (368)
Q Consensus       274 ~~G---~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~  350 (368)
                      +.+   .|.++.+++.+...+....                   ......+++......+   ++-+++  +....++..
T Consensus       149 Gh~d~~~G~v~~~~~~~~~~~~~~~-------------------~~~~G~~l~p~~a~ll---~rgl~T--l~~Rm~~~~  204 (331)
T d1pffa_         149 GHTDVVAGLVCSRADIIAKVKSQGI-------------------KDITGAIISPHDAWLI---TRGTLT--LDMRVKRAA  204 (331)
T ss_dssp             SSSSCCCEEEEECHHHHHHHHHTCC-------------------CCCCCCCCCHHHHHHH---HHHHHH--HHHHHHHHH
T ss_pred             CCCccccccccccccchhhhhhhhh-------------------hhccCCCCCHHHHHHH---HHHHHH--HHHHHHHHH
Confidence            777   7888888766544321110                   0111113333222222   233333  344456677


Q ss_pred             HHHHHHHHHHHhhcCC
Q 017640          351 KWIICSIIVIQERHNT  366 (368)
Q Consensus       351 ~l~~~l~~~l~~~~g~  366 (368)
                      +.+..+.++|++++.+
T Consensus       205 ~nA~~lA~~L~~hp~V  220 (331)
T d1pffa_         205 ENAQKVAEFLHEHKAV  220 (331)
T ss_dssp             HHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHhhhhCCcE
Confidence            7888888888888764

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.79  E-value=2.8e-18  Score=157.71  Aligned_cols=225  Identities=16%  Similarity=0.179  Sum_probs=171.4

Q ss_pred             chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcC
Q 017640          103 HFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTG  182 (368)
Q Consensus       103 ~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g  182 (368)
                      +.+++...+....++++++++-|..   ..+++++|..|+..++.++    +++||.|++....|.+++..+....++.|
T Consensus        59 ~~Y~R~~nPt~~~LE~~la~LEgg~---~a~~~sSGMaAi~~~l~~l----~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~g  131 (398)
T d1qgna_          59 FEYGRYGNPTTVVLEEKISALEGAE---STLLMASGMCASTVMLLAL----VPAGGHIVTTTDCYRKTRIFIETILPKMG  131 (398)
T ss_dssp             CCBGGGCCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHH----SCSSCEEEEETTSCHHHHHHHHHTGGGGT
T ss_pred             ceecCCCChHHHHHHHHHHHHhCCc---eEEEecCcchHHHHHHhhc----ccccccccccccccchhhhhhcccccccc
Confidence            4455555677778999999999986   5688888899999999998    89999999999999999988888889999


Q ss_pred             CEEEEEeCCCCCCCCHHHHH-HhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCc
Q 017640          183 ANLKFLNLNDDESPDLDKLK-EMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDA  261 (368)
Q Consensus       183 ~~v~~v~~~~~~~~d~~~l~-~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~  261 (368)
                      +++.++...     +.+..+ +.+.+++++|+++.|.||+..+.|+++|+++||++|+++++|.+.+.+.. ...-.+++
T Consensus       132 i~~~~~~~~-----~~~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~atP~~-~~Pl~~Ga  205 (398)
T d1qgna_         132 ITATVIDPA-----DVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLN-QKALALGA  205 (398)
T ss_dssp             CEEEEECSS-----CHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTT-CCTTTTTC
T ss_pred             ccccccccc-----chhhhhhhhccccceEEEccCccccccccchHHHHHHHHhhcCCEEEecceeecccc-CCchhhCC
Confidence            999988754     445444 45678999999999999999999999999999999999999999886654 23335689


Q ss_pred             cEEEecCcCcCCCCc---ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 017640          262 DFLVASSHKMCGPTG---IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS  338 (368)
Q Consensus       262 d~~~~s~~K~~g~~G---~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~  338 (368)
                      |+++.|.+|++|+.+   .|.+..++++++.++......                     .++.+.....-+   ++-++
T Consensus       206 DiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~~~~~---------------------G~~l~p~~a~ll---~rgl~  261 (398)
T d1qgna_         206 DLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHIL---------------------GGALNPNAAYLI---IRGMK  261 (398)
T ss_dssp             SEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHH---------------------CCCCCHHHHHHH---HHHGG
T ss_pred             CEEEEechhhcCcccceeehhhcchhhhhhhhhhhcccC---------------------CCcCCHHHHHHH---Hhcch
Confidence            999999999988777   787878877776655332111                     113332222222   22223


Q ss_pred             HhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          339 TIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       339 ~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      +  +....++..+.+..+.++|++++.+
T Consensus       262 T--L~lRm~~~~~nA~~lA~~L~~hp~V  287 (398)
T d1qgna_         262 T--LHLRVQQQNSTALRMAEILEAHPKV  287 (398)
T ss_dssp             G--HHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred             H--HHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            3  4444566777888888888877653

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=3.2e-19  Score=166.65  Aligned_cols=210  Identities=10%  Similarity=0.022  Sum_probs=146.4

Q ss_pred             CCeEEeccCC----C--CCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC-----CCCcEEE
Q 017640           66 KKLVYLDNAA----T--SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-----DSGEIVF  134 (368)
Q Consensus        66 ~~~i~l~~~~----~--~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-----~~~~v~~  134 (368)
                      ++.|+|..+.    .  .+.++.|+++..+....    +.. .  .+|.......++|+++++++...     .++.|+.
T Consensus        26 ~~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~----~~~-~--~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~   98 (397)
T d3tata_          26 SDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQ----PHG-A--SLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVAT   98 (397)
T ss_dssp             SSCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTS----CCS-S--BCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEE
T ss_pred             CCcEEccCCCCcCCCCCCCCcHHHHHHHHHHHhC----ccc-C--CCCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEE
Confidence            3457887763    2  24467777775543221    111 1  11222344558999999988654     2336666


Q ss_pred             eCCHHHH----HHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC--CCCCHHHHHHhcc--
Q 017640          135 TKNATEA----INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLS--  206 (368)
Q Consensus       135 t~g~t~a----~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~l~--  206 (368)
                      +.+++.+    +.+++..+    +.+||+|++++|.|+..    ...++..|++++.+++..+  +..|.+.+.+.+.  
T Consensus        99 ~~~~~~~~~~~l~~~~~~~----~~pgd~Vlv~~P~y~~y----~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~  170 (397)
T d3tata_          99 IQTLGGSGALKVGADFLKR----YFPESGVWVSDPTWENH----VAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTL  170 (397)
T ss_dssp             CCBSHHHHHHHHHHHHHHH----HCSSCCCEECSSCCTTH----HHHHHTTTCCCEECCCCCTTTSSCCHHHHHHHHTTC
T ss_pred             ecCchhHHHHHHHHHHhhh----cCCCCcceecccCcccc----HHHHHHcCCEEEEEecchhhccccchHHHHHHhhhc
Confidence            6555443    44455545    78999999999999984    4445566999999998744  5668777777654  


Q ss_pred             -cCceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCccc-------c--cCCCCCccEEEecCcCcCC
Q 017640          207 -RKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV-------V--DVQGLDADFLVASSHKMCG  273 (368)
Q Consensus       207 -~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~~-------~--~~~~~~~d~~~~s~~K~~g  273 (368)
                       ++++++++++++||||.+++   +++|.++|++|++++|.|++|..-...       +  ........+++.|++|.++
T Consensus       171 ~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~  250 (397)
T d3tata_         171 PARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFS  250 (397)
T ss_dssp             CSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHT
T ss_pred             ccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCccccc
Confidence             46789999999999999999   779999999999999999999842211       0  1122235688889999999


Q ss_pred             CCc--ceEEEEcccccccC
Q 017640          274 PTG--IGFLFGKSDLLSAM  290 (368)
Q Consensus       274 ~~G--~G~l~~~~~li~~l  290 (368)
                      .+|  +||++++...++..
T Consensus       251 ~~G~RiG~~~~~~~~~~~~  269 (397)
T d3tata_         251 LYGERVGGLSVMCEDAEAA  269 (397)
T ss_dssp             BTTTCCBCCEEECSSTTHH
T ss_pred             ccCccccccccchhHHHHH
Confidence            888  99999988776543

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=4.1e-19  Score=165.89  Aligned_cols=269  Identities=13%  Similarity=0.017  Sum_probs=170.2

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC------CCC-cE
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS------DSG-EI  132 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~------~~~-~v  132 (368)
                      ++.|+|..|.      ..+.++.|+++..+....-.  .+  .|    .......++|+++++++...      ++. .+
T Consensus        26 ~~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~--~~--~Y----~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~   97 (396)
T d2q7wa1          26 PGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET--TK--NY----LGIDGIPEFGRCTQELLFGKGSALINDKRART   97 (396)
T ss_dssp             --CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCC--CC--CC----CCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEE
T ss_pred             CCcEEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCC--CC--CC----CCCcCCHHHHHHHHHHHHhhcCCcccccceee
Confidence            4567888772      23556889998887766421  11  11    11233447888888876432      221 23


Q ss_pred             EEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC--CCCCHHHHHHhc---cc
Q 017640          133 VFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEML---SR  207 (368)
Q Consensus       133 ~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~l---~~  207 (368)
                      +.+.+++.++.+++..+.  .+.+||.|++++|.|+.    +...++..|++++.++...+  +..+...+++.+   .+
T Consensus        98 ~~~~~~~~~~~l~~~~l~--~~~~gd~Vlvp~P~y~~----y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (396)
T d2q7wa1          98 AQTPGGTGALRVAADFLA--KNTSVKRVWVSNPSWPN----HKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQA  171 (396)
T ss_dssp             EEESHHHHHHHHHHHHHH--HHSCCCEEEEEESCCTH----HHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCT
T ss_pred             eccchHHHHHHHHHHHHh--hcccceEEEEecCCCcc----chHHHHHcCCeeEecccccccccccccchHHHHHHHhcc
Confidence            456666666555544331  16899999999998887    45555667999999998643  444666555543   45


Q ss_pred             CceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCccc-------c--cCCCCCccEEEecCcCcCCCC
Q 017640          208 KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV-------V--DVQGLDADFLVASSHKMCGPT  275 (368)
Q Consensus       208 ~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~~-------~--~~~~~~~d~~~~s~~K~~g~~  275 (368)
                      +++++++++|+||||.+++   +++|+++|++|++++|+|++|..-...       .  ........+++.|++|.++.+
T Consensus       172 ~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~  251 (396)
T d2q7wa1         172 GDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLY  251 (396)
T ss_dssp             TCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCG
T ss_pred             CcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhccccccccccccccccc
Confidence            7789999999999999999   679999999999999999999832211       0  011224567788999999988


Q ss_pred             c--ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH------HHHHhCHHHHHH
Q 017640          276 G--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAID------YLSTIGMQKIHA  347 (368)
Q Consensus       276 G--~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~------~~~~~g~~~i~~  347 (368)
                      |  +||+.++++.++...........              ..+....+++..+..++...+.      .+++ .++.+++
T Consensus       252 G~R~G~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~-~~~~~~~  316 (396)
T d2q7wa1         252 NERVGACTLVAADSETVDRAFSQMKA--------------AIRANYSNPPAHGASVVATILSNDALRAIWEQ-ELTDMRQ  316 (396)
T ss_dssp             GGCCEEEEEECSSHHHHHHHHHHHHH--------------HHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHH-HHHHC-C
T ss_pred             CCCccccccchhHHHHHHHhhhhhhh--------------hhhccccCCCHHHHHHHHHHhcCchhHHHHHH-HHHHHHH
Confidence            8  99999998877654322100000              0011122445555444443332      1111 2566677


Q ss_pred             HHHHHHHHHHHHHHhh
Q 017640          348 YEVKWIICSIIVIQER  363 (368)
Q Consensus       348 ~~~~l~~~l~~~l~~~  363 (368)
                      +.++.++.+.+.|++.
T Consensus       317 ~~~~~r~~l~~~L~~~  332 (396)
T d2q7wa1         317 RIQRMRQLFVNTLQEK  332 (396)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            7778888888888765

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=99.79  E-value=6.1e-18  Score=155.73  Aligned_cols=226  Identities=19%  Similarity=0.186  Sum_probs=173.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCC
Q 017640          104 FLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGA  183 (368)
Q Consensus       104 ~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~  183 (368)
                      .+++...+..+.+++.++++-|..   ..+.++|+..|+..++.++    +++||.|++.+..|.+++..+.....+.|+
T Consensus        52 ~YsR~~nPT~~~le~~la~LEg~~---~a~~~sSGmaAi~~~~l~l----~~~gd~vv~~~~~yg~t~~~~~~~~~~~gi  124 (394)
T d1e5ea_          52 IYTRLGNPTVSNLEGKIAFLEKTE---ACVATSSGMGAIAATVLTI----LKAGDHLISDECLYGCTHALFEHALTKFGI  124 (394)
T ss_dssp             CBTTTCCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHH----CCTTCEEEEESCCCHHHHHHHHTHHHHTTC
T ss_pred             eecCCCCHHHHHHHHHHHHHhCCc---ceeeeccchHHHHHHHHhh----cccccccccccceeehhhHhHHHHhhccce
Confidence            344445666778999999999986   4577778889999999888    899999999999999998888888899999


Q ss_pred             EEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHh-cCCEEEEecCCcCCcccccCCCCCcc
Q 017640          184 NLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHD-VGAKVLVDACQSVPHMVVDVQGLDAD  262 (368)
Q Consensus       184 ~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~-~g~~li~D~a~~~~~~~~~~~~~~~d  262 (368)
                      ++.+++..     |.+++++++++++++|+++.+.||+..+.+++++.+.+++ +|+++++|.+.+.+.. .+.-++++|
T Consensus       125 ~~~~~d~~-----d~~~~~~~i~~~t~lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~~vvvDnT~atP~~-~~Pl~~GaD  198 (394)
T d1e5ea_         125 QVDFINTA-----IPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMI-TNPVDFGVD  198 (394)
T ss_dssp             EEEEECTT-----STTHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTT-CCGGGGTCS
T ss_pred             eeeccCCC-----CHHHHHHhhcccccEEEEeccCCcceeeehhhhhhhccccccCeEEEecCcccCccc-CCchhcCCC
Confidence            99999876     7889999999999999999999999999999999887765 6899999999886654 233356899


Q ss_pred             EEEecCcCcCCCCc---ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 017640          263 FLVASSHKMCGPTG---IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST  339 (368)
Q Consensus       263 ~~~~s~~K~~g~~G---~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~  339 (368)
                      +++.|.+|++++.+   +|.++++++.+...+....                   .+...++++....+-+   ++=+++
T Consensus       199 iVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~-------------------~~~~G~~lsp~~a~ll---~rgl~T  256 (394)
T d1e5ea_         199 VVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGI-------------------KDITGSVISPHDAWLI---TRGLST  256 (394)
T ss_dssp             EEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCC-------------------CCCCCCCCCHHHHHHH---HHHHTT
T ss_pred             EEEechhhhcCCCcccccccccchhhHHHHHHHHHH-------------------HHhhCCCCChHHHHHH---Hhhchh
Confidence            99999999998877   8888888876654321110                   1111223333332222   222222


Q ss_pred             hCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          340 IGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       340 ~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                        +....++..+.+..+.++|++++.+
T Consensus       257 --L~lRm~r~~~nA~~lA~~L~~hp~V  281 (394)
T d1e5ea_         257 --LNIRMKAESENAMKVAEYLKSHPAV  281 (394)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred             --HHHHHHHHHHHHHHHHHHHhhcCCc
Confidence              4445577778888888888887653

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.78  E-value=1.4e-18  Score=163.05  Aligned_cols=272  Identities=13%  Similarity=-0.050  Sum_probs=166.3

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC------CCC-cE
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS------DSG-EI  132 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~------~~~-~v  132 (368)
                      ++.|+|..|.      ..+..+.|.++..........+ +      +|.......++|+++++++...      .+. .+
T Consensus        30 ~~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~-~------~Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~  102 (412)
T d1ajsa_          30 PRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLN-H------EYLPILGLAEFRTCASRLALGDDSPALQEKRVGG  102 (412)
T ss_dssp             TTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCC-C------CCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEE
T ss_pred             CCcEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCCCcC-C------CCCCCCCCHHHHHHHHHHHhccCCccccccccee
Confidence            4567877773      2245677777755443321111 1      1122344457888888877432      221 34


Q ss_pred             EEeCCHHHHHHHHHHHc---cCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe-CC--CCCCCCHHHHHHhc-
Q 017640          133 VFTKNATEAINLVAYSW---GLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN-LN--DDESPDLDKLKEML-  205 (368)
Q Consensus       133 ~~t~g~t~a~~~~~~~~---~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~-~~--~~~~~d~~~l~~~l-  205 (368)
                      +.|.+++.++..+..++   ....+++||+|++++|.|+..    ...++..|++++.++ ..  ..+..|.+.+++.+ 
T Consensus       103 ~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y----~~~~~~~G~~~v~~~~~~~~~~~~~d~~~~~~~~~  178 (412)
T d1ajsa_         103 VQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENH----NGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLE  178 (412)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHH----HHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHH
T ss_pred             ecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhh----HHHHHHcCCeEEEeecccccccccccHHHHHHHHH
Confidence            56667666665554432   122379999999999988774    444556688755443 32  23456777776654 


Q ss_pred             --ccCceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCccc----------ccCCCCCccEEEecCcC
Q 017640          206 --SRKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV----------VDVQGLDADFLVASSHK  270 (368)
Q Consensus       206 --~~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~~----------~~~~~~~~d~~~~s~~K  270 (368)
                        .++++++++++||||||.+++   +++|+++|++||++||.|++|..-...          .........+++.|++|
T Consensus       179 ~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk  258 (412)
T d1ajsa_         179 NAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSK  258 (412)
T ss_dssp             HSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTT
T ss_pred             hccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhcccccccccccc
Confidence              567899999999999999999   789999999999999999999732210          01122246678889999


Q ss_pred             cCCCCc--ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH------HHHHhCH
Q 017640          271 MCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAID------YLSTIGM  342 (368)
Q Consensus       271 ~~g~~G--~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~------~~~~~g~  342 (368)
                      .++.+|  +|++++..+.++.+..........              .+....+++..+..++...+.      .+.. -+
T Consensus       259 ~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  323 (412)
T d1ajsa_         259 NFGLYNERVGNLTVVAKEPDSILRVLSQMQKI--------------VRVTWSNPPAQGARIVARTLSDPELFHEWTG-NV  323 (412)
T ss_dssp             TSCCGGGCEEEEEEECSSHHHHHHHHHHHHHH--------------HHTTTSSCCSHHHHHHHHHHHSHHHHHHHHH-HH
T ss_pred             cccCCCCCccccccchhHHHHHHHHHHHHHHH--------------hhccccccchHHHHHHHHHhcCHHHHHHHHH-HH
Confidence            888888  999999887765443211100000              000111333333333333322      1222 25


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh
Q 017640          343 QKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       343 ~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +.++++.++.++.+.+.|.+.
T Consensus       324 ~~~~~~l~~~r~~l~~~L~~~  344 (412)
T d1ajsa_         324 KTMADRILSMRSELRARLEAL  344 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            667777888888888888765

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.78  E-value=1.6e-17  Score=154.15  Aligned_cols=257  Identities=15%  Similarity=0.091  Sum_probs=172.5

Q ss_pred             CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCC
Q 017640           78 QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSG  157 (368)
Q Consensus        78 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~g  157 (368)
                      ....+-++++.+.++.-       .+....  .+..+++++.+++++|..   .++.+++||.|+.+++.++   .+++|
T Consensus        10 ~~~~~~~~~~~~~l~~g-------~~~~~~--g~~v~~fE~~~a~~~g~~---~~v~~~SGt~Al~lal~~l---~~~~g   74 (384)
T d1b9ha_          10 QYDDAERNGLVRALEQG-------QWWRMG--GDEVNSFEREFAAHHGAA---HALAVTNGTHALELALQVM---GVGPG   74 (384)
T ss_dssp             CCCHHHHHHHHHHHHTS-------CCBTTT--CSHHHHHHHHHHHHTTCS---EEEEESCHHHHHHHHHHHT---TCCTT
T ss_pred             CCCHHHHHHHHHHHHcC-------CeeecC--CHHHHHHHHHHHHHHCcC---eEEEeCCHHHHHHHHHHHc---CCCCC
Confidence            34556677777777642       110000  234668999999999997   6789999999999999998   58999


Q ss_pred             CEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCC-CCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHh
Q 017640          158 DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHD  236 (368)
Q Consensus       158 d~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~  236 (368)
                      |+|++++.+|.++..+..    ..|++++++++++ ++.+|++.+++.+.+++++|++.+.   .|...++++|.++|++
T Consensus        75 deVi~p~~t~~a~~~ai~----~~g~~p~~~d~~~~~~~~d~~~~~~~i~~~tk~i~~~~~---~g~~~d~~~i~~~~~~  147 (384)
T d1b9ha_          75 TEVIVPAFTFISSSQAAQ----RLGAVTVPVDVDAATYNLDPEAVAAAVTPRTKVIMPVHM---AGLMADMDALAKISAD  147 (384)
T ss_dssp             CEEEEESSSCTHHHHHHH----HTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBCG---GGCCCCHHHHHHHHHH
T ss_pred             CEEEEecccccccccccc----ccccccccccccccccccchhhhcccccccccccccccc---cccccccccchhhhhh
Confidence            999999999998765543    4599999999885 4889999999999999999987655   7888999999999999


Q ss_pred             cCCEEEEecCCcCCcccccC---CCC-CccEEEecCcCcCCCCcceEEEEcc-cccccCCCcccCCcceeecccCCCCCC
Q 017640          237 VGAKVLVDACQSVPHMVVDV---QGL-DADFLVASSHKMCGPTGIGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFA  311 (368)
Q Consensus       237 ~g~~li~D~a~~~~~~~~~~---~~~-~~d~~~~s~~K~~g~~G~G~l~~~~-~li~~l~~~~~g~~~~~~~~~~~~~~~  311 (368)
                      +|+++|.|++|+.|.. ++-   ... +..++.++.+|.++..+.|++++++ ++.+.++.....+.....   ....+.
T Consensus       148 ~~i~lieD~a~a~ga~-~~g~~~g~~g~~~~~Sf~~~K~i~~g~GG~i~t~~~~~~~~~~~~~~~g~~~~~---~~~~~~  223 (384)
T d1b9ha_         148 TGVPLLQDAAHAHGAR-WQGKRVGELDSIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPR---DDRRYF  223 (384)
T ss_dssp             HTCCBCEECTTCTTCE-ETTEEGGGSSSCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCT---TCSSCC
T ss_pred             hhhhhhhhhceecccc-cCCEecCcccccceecccccccccccccchhhhhhHHHHHHHHHHHhcCCCCcc---cccccc
Confidence            9999999999998875 221   111 2344555668876644467777654 454555433322211100   000110


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          312 DPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       312 ~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      ...-++..-..++.+    +.++..++  .++.+.++.+++..++.+.|.++++.
T Consensus       224 ~~~~G~n~rms~l~A----aig~~qL~--~ld~~~~~R~~~~~~y~~~L~~~~~i  272 (384)
T d1b9ha_         224 HKIAGSNMRLNEFSA----SVLRAQLA--RLDEQIAVRDERWTLLSRLLGAIDGV  272 (384)
T ss_dssp             CCSCCCBCBCBHHHH----HHHHHHHT--THHHHHHHHHHHHHHHHHHHHTSTTC
T ss_pred             ccccccccccccchh----hhhhhhhh--hcccchhhhhhhhhhhhhhhhccccc
Confidence            000111111112221    11222222  36677788888999999999877653

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=4.4e-19  Score=162.92  Aligned_cols=275  Identities=12%  Similarity=-0.020  Sum_probs=187.0

Q ss_pred             EeccCCCCCCcHHHHHHHHHHHHHhhccCCCCc---chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHH
Q 017640           70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGI---HFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVA  146 (368)
Q Consensus        70 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~  146 (368)
                      |--..++..+|++|++++.+.+..+... +.+.   +..+..+.+.++++|+.+++++|+++++.|++++|++++...++
T Consensus         3 ~nF~pGP~~~p~~Vl~a~~~~~~~~~~~-~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~   81 (360)
T d1bjna_           3 FNFSSGPAMLPAEVLKQAQQELRDWNGL-GTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAV   81 (360)
T ss_dssp             EECCSSSCCCCHHHHHHHHHTSSSGGGS-SSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHH
T ss_pred             EEeCCCCcCCCHHHHHHHHHHHhhhccc-CccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhh
Confidence            3334566678999999999988766432 2232   23456788999999999999999987668899988877777666


Q ss_pred             HHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccC
Q 017640          147 YSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILP  226 (368)
Q Consensus       147 ~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~  226 (368)
                      ...   ...+++.+++....+..  ..+...++..|..++.+....+...+.+.+++.+..+++++++.+.+|.||...+
T Consensus        82 ~~~---~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~t~~~~~  156 (360)
T d1bjna_          82 PLN---ILGDKTTADYVDAGYWA--ASAIKEAKKYCTPNVFDAKVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIA  156 (360)
T ss_dssp             HHH---HCTTCCEEEEEESSHHH--HHHHHHHTTTSEEEEEECEEEETTEEEECCGGGCCCCSSCSCEEECSEETTTTEE
T ss_pred             hhc---ccccccccceecccchh--hhhHHHHhhcCccceeeccccCCCcchhhhhhhhccCCceeEEEecccccccCcc
Confidence            554   26777777777654433  3466777888877777776666666777777788888999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCcCC-CCcceEEEEcccccccCCCcccCCcceeeccc
Q 017640          227 IEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCG-PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFL  305 (368)
Q Consensus       227 l~~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g-~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~  305 (368)
                      ++++  .++.+++.+++|++++.+..+++..  +.|++++|.+|.++ |+|+++++.++...+........+.... ...
T Consensus       157 ~~~i--~~~~~~~~v~vDa~~~~~~~~vd~~--~~dv~~~ss~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  231 (360)
T d1bjna_         157 IDET--PDFGADVVVAADFSSTILSRPIDVS--RYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSI-LND  231 (360)
T ss_dssp             CCCC--CCCCTTCCEEEECTTTTTSSCCCGG--GCSEEEEETTTTTSSTTCEEEEEEGGGCSCCCTTSCGGGCHHH-HHH
T ss_pred             ccce--ecccccceeeeeeeccccceeeeec--cceeEEEEcccccccCCCceeEeeehhhhhccccCCcchhhHH-HHh
Confidence            7766  3567899999999999998877665  47999999999554 6667888887776554433222111100 000


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          306 DHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       306 ~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                              .......++......+....+......+.+...++....+.+....+...
T Consensus       232 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (360)
T d1bjna_         232 --------NGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNS  281 (360)
T ss_dssp             --------TTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             --------hhhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhcc
Confidence                    01112223444444444444444444456666666666666666655544

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=99.77  E-value=9.9e-18  Score=157.16  Aligned_cols=274  Identities=14%  Similarity=0.022  Sum_probs=167.5

Q ss_pred             CCeEEeccCC----CC--CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCC-----CCCcE--
Q 017640           66 KKLVYLDNAA----TS--QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-----DSGEI--  132 (368)
Q Consensus        66 ~~~i~l~~~~----~~--~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-----~~~~v--  132 (368)
                      ++.|+|..|.    .+  +.++.|+++.+...... ...+      +|.......++|+++++++...     .++.+  
T Consensus        29 ~~kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~-~~~~------~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~  101 (412)
T d1yaaa_          29 ATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDS-SYNH------EYLGITGLPSLTSNAAKIIFGTQSDALQEDRVIS  101 (412)
T ss_dssp             SSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCT-TCCC------CCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEE
T ss_pred             CCcEEeecCCCcCCCCCCCCcHHHHHHHHHHHhCc-ccCC------CCCCCCCCHHHHHHHHHHHhcccCccccccceeE
Confidence            4467887763    22  45578887754433211 1111      1111333447888888876432     11122  


Q ss_pred             EEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCC--CCCCCCHHHHHHhcc---c
Q 017640          133 VFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDESPDLDKLKEMLS---R  207 (368)
Q Consensus       133 ~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~l~---~  207 (368)
                      +.+.++..++..++....  ...+||.|++++|.|+..    ...++..|++++.++..  .++.+|.+.+++.+.   +
T Consensus       102 ~~~~~~~~~~~~~~~~~~--~~~~gd~Vlip~P~~~~y----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (412)
T d1yaaa_         102 VQSLSGTGALHISAKFFS--KFFPDKLVYLSKPTWANH----MAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPE  175 (412)
T ss_dssp             EEEEHHHHHHHHHHHHHH--HHCTTCCEEEEESCCTTH----HHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCT
T ss_pred             EecccchhHHHHHHHHHh--ccCCCCEEecccccCchh----HHHHHHcCCceecccccccccccccchhhhcccccCCC
Confidence            223445545444432221  167999999999988884    44556679999999975  335667787777664   4


Q ss_pred             CceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCccc------------c-cCCCCCccEEEecCcCc
Q 017640          208 KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV------------V-DVQGLDADFLVASSHKM  271 (368)
Q Consensus       208 ~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~~------------~-~~~~~~~d~~~~s~~K~  271 (368)
                      +++++++++||||||.+++   +++|+++|+++++++|+|++|..-...            . ........+++.|+||.
T Consensus       176 ~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~  255 (412)
T d1yaaa_         176 GSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKN  255 (412)
T ss_dssp             TCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTT
T ss_pred             ceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCc
Confidence            5689999999999999999   789999999999999999999732210            0 01223456888899999


Q ss_pred             CCCCc--ceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH------HHHhCHH
Q 017640          272 CGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY------LSTIGMQ  343 (368)
Q Consensus       272 ~g~~G--~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~------~~~~g~~  343 (368)
                      |+.+|  +||++++++.++.+.............          ..+.....++......+...+.-      +.+ .++
T Consensus       256 ~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~-~~~  324 (412)
T d1yaaa_         256 AGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAK----------IIRSEVSNPPAYGAKIVAKLLETPELTEQWHK-DMV  324 (412)
T ss_dssp             SCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHH----------HHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHH-HHH
T ss_pred             cccCcCceEEEEEchhhhhhHHHHHHHHHHHHHH----------HHHHHhcCCChHHHHHHHHHhcChHHHHHHHH-HHH
Confidence            99999  999999988765433111000000000          00111124444444444433331      111 256


Q ss_pred             HHHHHHHHHHHHHHHHHHhh
Q 017640          344 KIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       344 ~i~~~~~~l~~~l~~~l~~~  363 (368)
                      .++++.++.++.+.+.|++.
T Consensus       325 ~~~~~~~~~r~~l~~~L~~~  344 (412)
T d1yaaa_         325 TMSSRITKMRHALRDHLVKL  344 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            66777777778888888765

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=99.76  E-value=4.4e-17  Score=150.61  Aligned_cols=171  Identities=16%  Similarity=0.223  Sum_probs=143.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCE
Q 017640          105 LSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGAN  184 (368)
Q Consensus       105 ~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~  184 (368)
                      +++...+..+.++++|+.+-|..   ..+.++++..|+..++.++    +++||+|+++...|.+++..+....++.|++
T Consensus        52 YsR~~nPT~~~LE~~la~LE~~~---~a~~~~SGmaAi~~~~~~l----~~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~  124 (421)
T d2ctza1          52 YSRIMNPTVDVLEKRLAALEGGK---AALATASGHAAQFLALTTL----AQAGDNIVSTPNLYGGTFNQFKVTLKRLGIE  124 (421)
T ss_dssp             CBTTBCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHH----CCTTCEEEECSCCCHHHHHHHHTHHHHTTCE
T ss_pred             ecCCCCHHHHHHHHHHHHHhCCC---eEEEecChHHHHHHHHHhh----cccccceeecCCcCCchhHHHHHHHhhcccc
Confidence            33344566678999999999986   4577788888999999988    8999999999999999999899899999999


Q ss_pred             EEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCc-CCcccccCCCCCccE
Q 017640          185 LKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQS-VPHMVVDVQGLDADF  263 (368)
Q Consensus       185 v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~-~~~~~~~~~~~~~d~  263 (368)
                      +.++....    +.+..++.++++|++|+++.|.||+..+.|++.|+++||++|+++++|.+.+ .+.. ...-++++|+
T Consensus       125 ~~~~d~~~----~~~~~~~~~~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vvDnT~a~tP~~-~~Pl~~GaDi  199 (421)
T d2ctza1         125 VRFTSREE----RPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYL-LRPLAWGAAL  199 (421)
T ss_dssp             EEECCTTC----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTS-CCGGGGTCSE
T ss_pred             ceeccccc----CcchhccccCCCceEEEEcCCCcceeEecchHHHHHHHHhcCCceEeccccccccee-ccccccCCcE
Confidence            99886531    3466677788999999999999999999999999999999999999999987 3433 2223568999


Q ss_pred             EEecCcCcCCCCc---ceEEEEccccc
Q 017640          264 LVASSHKMCGPTG---IGFLFGKSDLL  287 (368)
Q Consensus       264 ~~~s~~K~~g~~G---~G~l~~~~~li  287 (368)
                      ++.|.+|.+++.+   +|.++.+++.+
T Consensus       200 VvhS~TKyl~GHsD~l~G~vv~~~~~~  226 (421)
T d2ctza1         200 VTHSLTKWVGGHGAVIAGAIVDGGNFP  226 (421)
T ss_dssp             EEEETTTTTTCSSCCCCEEEEECSCSC
T ss_pred             EEEechhhccCCCCeEEEEEEcCCcch
Confidence            9999999988887   78888777654

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.75  E-value=8.9e-17  Score=148.62  Aligned_cols=227  Identities=13%  Similarity=0.136  Sum_probs=154.1

Q ss_pred             HHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeC
Q 017640          111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL  190 (368)
Q Consensus       111 ~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~  190 (368)
                      +..+.+++.+++++|..   .+++++|+|.|+.+++.++   .+++||+|++++.+|.++..++...    |++++++++
T Consensus        21 ~~~~~fE~~~~~~~~~~---~~~~~~SgT~Al~lal~~l---~~~~gdeVi~p~~t~~a~~~~~~~~----g~~pv~~Di   90 (374)
T d1o69a_          21 EFVNRFEQSVKDYSKSE---NALALNSATAALHLALRVA---GVKQDDIVLASSFTFIASVAPICYL----KAKPVFIDC   90 (374)
T ss_dssp             HHHHHHHHHHHHHHCCS---EEEEESCHHHHHHHHHHHT---TCCTTCEEEEESSSCGGGTHHHHHT----TCEEEEECB
T ss_pred             HHHHHHHHHHHHHHCcC---eEEEeCCHHHHHHHHHHHc---CCCCcCEEEeCCcchHhhHHHHhhc----cceeEeccc
Confidence            44668999999999997   6799999999999999998   5899999999999999987665544    999999999


Q ss_pred             CCCCCCC-H--HHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCccccc--CCCCCccEEE
Q 017640          191 NDDESPD-L--DKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD--VQGLDADFLV  265 (368)
Q Consensus       191 ~~~~~~d-~--~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~~~~--~~~~~~d~~~  265 (368)
                      +++...+ .  ..++..+.+++++|++.+.   .|...++++|.++|+++|+.||.|+||++|..--.  +.. -.|+.+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~aii~~~~---~G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~~~~~~~G~-~gd~~~  166 (374)
T d1o69a_          91 DETYNIDVDLLKLAIKECEKKPKALILTHL---YGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGT-FGEFGV  166 (374)
T ss_dssp             CTTSSBCHHHHHHHHHHCSSCCCEEEEECG---GGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTS-SSSEEE
T ss_pred             ccccccccccccccchhccccccccccccc---ccchhhhHHHHHHhhccCcchhhhhhhhhcceECCeecCC-CCceEE
Confidence            8764332 3  3344566778899998887   78889999999999999999999999999875211  111 247777


Q ss_pred             ecCc--CcCCCCcceEEEEcc-cccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCH
Q 017640          266 ASSH--KMCGPTGIGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGM  342 (368)
Q Consensus       266 ~s~~--K~~g~~G~G~l~~~~-~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~  342 (368)
                      +|++  |.++..|.|++++++ ++.+.++.+...+....      ..+....-++.. .++-.+   ++.++..+.  .+
T Consensus       167 fSf~~~K~l~tgeGG~i~tnn~~~~~~~~~~~~~g~~~~------~~~~~~~~G~N~-rm~ei~---Aaig~~qL~--~l  234 (374)
T d1o69a_         167 YSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENC------LHYEHLDYGYNY-RLSNVL---GAIGVAQME--VL  234 (374)
T ss_dssp             EECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSS------SSCCCSSCCCBC-BCCHHH---HHHHHHHHT--TH
T ss_pred             EeccCccccccccceeehhhhHHHHHhhccccccccccc------cccccccCCccc-cccchh---hhhhHHHHh--hh
Confidence            7776  767655567777755 45444443322111100      000000011111 122221   222222222  35


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh
Q 017640          343 QKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       343 ~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      +.+.++.++++++..+.|.+.
T Consensus       235 ~~~i~~r~~i~~~y~~~L~~~  255 (374)
T d1o69a_         235 EQRVLKKREIYEWYKEFLGEY  255 (374)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTT
T ss_pred             hhhcchhHHHHHHHHhhcccc
Confidence            666777778888888888654

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.75  E-value=9e-18  Score=156.49  Aligned_cols=209  Identities=15%  Similarity=0.055  Sum_probs=139.9

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcC----CCCCCcEEEe
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN----ASDSGEIVFT  135 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~----~~~~~~v~~t  135 (368)
                      ++.|+|..|.      ..+.++.|.++.++..+....  +  .|.    ..+...++|+++++++.    .......+++
T Consensus        26 ~~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~--~--~Y~----p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~   97 (394)
T d2ay1a_          26 QGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETT--K--TYA----GLSGEPEFQKAMGELILGDGLKSETTATLAT   97 (394)
T ss_dssp             TTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCC--C--CCC----CSSCCHHHHHHHHHHHHGGGCCGGGEEEEEE
T ss_pred             CCCEEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCC--C--CCC----CCCCCHHHHHHHHHHHhccccccccccceec
Confidence            4567888773      235678999998887765321  1  111    12233367777777652    2221244555


Q ss_pred             CCHHHH--HHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCC--CCCCHHHHHHh---cccC
Q 017640          136 KNATEA--INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEM---LSRK  208 (368)
Q Consensus       136 ~g~t~a--~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~---l~~~  208 (368)
                      .|++.+  +.+.+..+    ..+||.|++++|.|+..    ...++..|.+++.++...+  +..+.+.+++.   ..++
T Consensus        98 ~~~~~~~~l~~~~~~~----~~~gd~V~~p~p~~~~y----~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (394)
T d2ay1a_          98 VGGTGALRQALELARM----ANPDLRVFVSDPTWPNH----VSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKG  169 (394)
T ss_dssp             EHHHHHHHHHHHHHHH----HCTTCCEEEEESCCHHH----HHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCTT
T ss_pred             cCchHHHHHHHHHhhh----cCCceEEEEecccccch----HHHHHHcCCEEEEecccchhcccccchhHHHHHhhcccC
Confidence            555444  44444444    78999999999977774    4455566999999998533  44455555444   3456


Q ss_pred             ceEEEEcccccccccccC---HHHHHHHHHhcCCEEEEecCCcCCccc---------ccCCCCCccEEEecCcCcCCCCc
Q 017640          209 TKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV---------VDVQGLDADFLVASSHKMCGPTG  276 (368)
Q Consensus       209 ~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~~---------~~~~~~~~d~~~~s~~K~~g~~G  276 (368)
                      +++++++++|||||.+++   +++|+++|++|++++|.|++|..-...         .........+++.|++|.++.+|
T Consensus       170 ~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G  249 (394)
T d2ay1a_         170 DMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYR  249 (394)
T ss_dssp             CEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGG
T ss_pred             cEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhcccccccccccccccCCc
Confidence            789999999999999999   789999999999999999999733211         00111234567779999888777


Q ss_pred             --ceEEEEcccccccC
Q 017640          277 --IGFLFGKSDLLSAM  290 (368)
Q Consensus       277 --~G~l~~~~~li~~l  290 (368)
                        +|++.+....++..
T Consensus       250 ~R~G~~~~~~~~~~~~  265 (394)
T d2ay1a_         250 ERTGCLLALCADAATR  265 (394)
T ss_dssp             GCEEEEEEECSSHHHH
T ss_pred             ccccchhhchhHHHHH
Confidence              99999988776543

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.74  E-value=5e-17  Score=150.21  Aligned_cols=253  Identities=14%  Similarity=0.112  Sum_probs=170.8

Q ss_pred             CcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCC-
Q 017640           79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSG-  157 (368)
Q Consensus        79 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~g-  157 (368)
                      ..++-++++.+.+..       +.+..    .+..+++++.+++++|..   .+++++|||.|+.+++.++   ...+| 
T Consensus        10 ~~~~~~~~v~~~l~~-------~~~~~----G~~v~~fE~~~~~~~g~k---~ai~~~Sgt~Al~~al~al---~~~~~~   72 (371)
T d2fnua1          10 LDKEDKKAVLEVLNS-------KQLTQ----GKRSLLFEEALCEFLGVK---HALVFNSATSALLTLYRNF---SEFSAD   72 (371)
T ss_dssp             CCHHHHHHHHHHHTS-------SCCSS----SHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHS---SCCCTT
T ss_pred             CCHHHHHHHHHHHcC-------CCccC----CHHHHHHHHHHHHHHCcC---eEEEEecHHHHHHHHHHHh---cccCCC
Confidence            456667777777642       11111    245778999999999997   6789999999999999998   35554 


Q ss_pred             -CEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHh
Q 017640          158 -DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHD  236 (368)
Q Consensus       158 -d~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~  236 (368)
                       ++|+++..+++++..++..    .|+++++++++++..++.+++++++++++++|++.|.   .|...++++|.++|++
T Consensus        73 ~~eVi~p~~t~~a~~~ai~~----~G~~pv~vDi~~~~~~~~~~~~~~~~~~t~avi~vh~---~G~~~~~~~i~~~~~~  145 (371)
T d2fnua1          73 RNEIITTPISFVATANMLLE----SGYTPVFAGIKNDGNIDELALEKLINERTKAIVSVDY---AGKSVEVESVQKLCKK  145 (371)
T ss_dssp             SCEEEECSSSCTHHHHHHHH----TTCEEEECCBCTTSSBCGGGSGGGCCTTEEEEEEECG---GGCCCCHHHHHHHHHH
T ss_pred             CCeeecccccccccceeeec----cCcccccccccccccccchhhhhhccchhhccccccc---cccccccccccccccc
Confidence             4899999999987655444    5999999999988878889999999999999998876   7999999999999999


Q ss_pred             cCCEEEEecCCcCCccccc--CCCC-CccEEEecCcCcCCCCcceEEEEcc-cccccCCCcccCCcceeecccCCCCCCC
Q 017640          237 VGAKVLVDACQSVPHMVVD--VQGL-DADFLVASSHKMCGPTGIGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFAD  312 (368)
Q Consensus       237 ~g~~li~D~a~~~~~~~~~--~~~~-~~d~~~~s~~K~~g~~G~G~l~~~~-~li~~l~~~~~g~~~~~~~~~~~~~~~~  312 (368)
                      +|+++|.|++|++|...-.  .... ...++.+...|.++..+.|+++.++ ++.+.++.....|.......  ..... 
T Consensus       146 ~~i~lIEDaaqa~Ga~~~~~~~G~~g~~~~~Sf~~~K~l~~g~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~--~~~~~-  222 (371)
T d2fnua1         146 HSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPITTAEGGAVVTNDSELHEKMKLFRSHGMLKKDFF--EGEVK-  222 (371)
T ss_dssp             HTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTTEEESSSS--CEEES-
T ss_pred             cchhhccchhhccCceeccccCCccccccccccccccccccccceEEEeechhhhhhccccccccccccccc--ccccc-
Confidence            9999999999999876211  1111 2334444557866655568888765 45555554333222110000  00000 


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcC
Q 017640          313 PPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHN  365 (368)
Q Consensus       313 ~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g  365 (368)
                       ...+..-..++.    ++.++..++  .++.+.++.++++.+..+.|.+.++
T Consensus       223 -~~G~n~r~sel~----Aaigl~qL~--~l~~~~~~R~~~~~~y~~~l~~~~~  268 (371)
T d2fnua1         223 -SIGHNFRLNEIQ----SALGLSQLK--KAPFLMQKREEAALTYDRIFKDNPY  268 (371)
T ss_dssp             -SCCCBCCCCHHH----HHHHHHHHT--THHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred             -cccccccccchh----hhhhhhhhh--hccchhhhhhhhhhhhccccccccc
Confidence             011111112222    222333333  3677777888888888888877654

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.73  E-value=5.3e-18  Score=158.61  Aligned_cols=211  Identities=11%  Similarity=0.068  Sum_probs=142.3

Q ss_pred             HHHHHHHHHc----CCCC-CCcEEEeCCHHHHHHHHHHHccC----CCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEE
Q 017640          115 LARKKVAAFI----NASD-SGEIVFTKNATEAINLVAYSWGL----SNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANL  185 (368)
Q Consensus       115 ~~r~~la~~~----~~~~-~~~v~~t~g~t~a~~~~~~~~~~----~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v  185 (368)
                      +|++.|+++.    |+.. +..|++++|++++|..++.++..    ..+.|||+|+++.|.|+.    +...++..+.+.
T Consensus       104 ~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~----Y~~~~~~~~~~~  179 (425)
T d2hoxa1         104 ELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPV----FREQTKYFDKKG  179 (425)
T ss_dssp             HHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHH----HHHHHHHSCBTT
T ss_pred             HHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCcccc----HHHHHHHcCCCC
Confidence            4555555554    3322 23699999999999999999832    125789999999997776    455566667655


Q ss_pred             EEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcc-cccCCCCCccEE
Q 017640          186 KFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM-VVDVQGLDADFL  264 (368)
Q Consensus       186 ~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~-~~~~~~~~~d~~  264 (368)
                      ..++.      |.+.++++++++++++++++|+||||.+..       +..+++.+|.|++|..... ++ ......+++
T Consensus       180 ~~~~~------D~~~~~~~~~~~~~ii~l~sPnNPtG~l~~-------~v~~~~~~I~DEaY~~~~f~~~-~~~~~~~Iv  245 (425)
T d2hoxa1         180 YVWAG------NAANYVNVSNPEQYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVYYWPHYTPI-KYKADEDIL  245 (425)
T ss_dssp             EEEEE------EGGGGTTCSCGGGEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTTCSTTTSCC-CSCBCCSEE
T ss_pred             CccCC------CHHHHHhhCCCCceEEEEECCCCCCcchhh-------hhhhCCEEEEeccccCccccch-hhhcCCeEE
Confidence            55444      778888888899999999999999998742       2346899999999975433 22 233467899


Q ss_pred             EecCcCcCCCCc--ceEEEEccccc-ccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh-
Q 017640          265 VASSHKMCGPTG--IGFLFGKSDLL-SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-  340 (368)
Q Consensus       265 ~~s~~K~~g~~G--~G~l~~~~~li-~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~-  340 (368)
                      +.|+||.||.+|  +||++++++.+ +.+.....                     +...+.+..++.++..+++..... 
T Consensus       246 l~S~SK~fglaGlRiGw~i~~~~~i~~~~~~~~~---------------------~~~~~vs~~~Q~aa~~aL~~~~~~~  304 (425)
T d2hoxa1         246 LFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMT---------------------KNTEGTPRETQLRSLKVLKEVVAMV  304 (425)
T ss_dssp             EEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHH---------------------HHTSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCHHhccCcchheeeEEeCCHHHHHHHHHhhc---------------------cCcccCCHHHHHHHHHHhhccHHHH
Confidence            999999999999  99988876543 44432221                     111245566666666666543221 


Q ss_pred             ---------CHHHHHHHHHHHHHHHHHHHHhhc
Q 017640          341 ---------GMQKIHAYEVKWIICSIIVIQERH  364 (368)
Q Consensus       341 ---------g~~~i~~~~~~l~~~l~~~l~~~~  364 (368)
                               -.+..+++.++..+++.+.+.+..
T Consensus       305 ~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~  337 (425)
T d2hoxa1         305 KTQKGTMRDLNTFGFKKLRERWVNITALLDQSD  337 (425)
T ss_dssp             HHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                     123344555555566666666543

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.73  E-value=3.5e-17  Score=148.35  Aligned_cols=263  Identities=17%  Similarity=0.172  Sum_probs=186.3

Q ss_pred             eEEeccCCCCCCcHHHHHHHHHHHHHhh--ccCCCCcchhhHH-HHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHH
Q 017640           68 LVYLDNAATSQKPIAVLKALQNYYEAYN--SNVHRGIHFLSAK-ATDEYELARKKVAAFINASDSGEIVFTKNATEAINL  144 (368)
Q Consensus        68 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~  144 (368)
                      .+.|=... ..+++.|++++...+..-+  +.|.. .++.|.. ..+...-..++..++||+... + +-..|++.|+..
T Consensus        25 ~l~LiaSE-N~~S~~v~~a~~S~l~nkyaeG~pg~-ryy~G~~~id~iE~la~~ra~~lF~a~~a-n-Vqp~SGs~An~a  100 (405)
T d1kl1a_          25 KIELIASE-NFVSRAVMEAQGSVLTNKYAEGYPGR-RYYGGCEYVDIVEELARERAKQLFGAEHA-N-VQPHSGAQANMA  100 (405)
T ss_dssp             SEECCTTC-CCCCHHHHHHHTSGGGGCCCCEETTE-ESSSCCHHHHHHHHHHHHHHHHHHCCSEE-E-CCCSSHHHHHHH
T ss_pred             CceEeccC-CcCCHHHHHHhcCcccCcCcCCCCCc-cccCCchhHHHHHHHHHHHHHHHhCCCcc-e-eeccCchHHHHH
Confidence            35554443 4578899998877765422  23322 2233333 344444577888999998732 2 344577789999


Q ss_pred             HHHHccCCCCCCCCEEEEcCCCCcccHHH-HHHHHHHcCCEEEEEeCCC-CCCCCHHHHHHhccc-CceEEEEccccccc
Q 017640          145 VAYSWGLSNLKSGDEVILTVAEHHSAIVP-WQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSR-KTKLVVIHHISNML  221 (368)
Q Consensus       145 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~-~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~l~~-~~~~v~~~~~~n~t  221 (368)
                      ++.++    ++|||+|+..+..+.+.... ..........+.+..++++ ++.||.+++++.+.. +|++|++....+| 
T Consensus       101 v~~al----l~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~y~-  175 (405)
T d1kl1a_         101 VYFTV----LEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYP-  175 (405)
T ss_dssp             HHHHH----CCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC-
T ss_pred             HHHHh----cCCCCEEEEeecccccccccCccccccceEEEEEEeccchhcccccHHHHHHHHHhhCcceEEecccccc-
Confidence            99999    99999999988655543311 0001111245777788884 488999999998865 8899998887766 


Q ss_pred             ccccCHHHHHHHHHhcCCEEEEecCCcCCcc-----cccCCCCCccEEEecCcCcC-CCCcceEEEEcccccccCCCccc
Q 017640          222 ASILPIEEIVHWSHDVGAKVLVDACQSVPHM-----VVDVQGLDADFLVASSHKMC-GPTGIGFLFGKSDLLSAMPPFLG  295 (368)
Q Consensus       222 G~~~~l~~i~~l~~~~g~~li~D~a~~~~~~-----~~~~~~~~~d~~~~s~~K~~-g~~G~G~l~~~~~li~~l~~~~~  295 (368)
                       ..+|++++.++|++.|+++++|.+|-.|-+     +-.+  ...|++++|.||.+ ||.| |+++.++++.+++.....
T Consensus       176 -r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~--~~aDvvt~tThKtlrGPrg-g~I~~~~~~~~~i~~avf  251 (405)
T d1kl1a_         176 -RIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPV--PYAHFVTTTTHKTLRGPRG-GMILCQEQFAKQIDKAIF  251 (405)
T ss_dssp             -SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST--TTCSEEEEESSSTTCCCSC-EEEEECHHHHHHHHHHHT
T ss_pred             -cccChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChh--hhhhheeccccccccCCCC-ceEEecchhHHHHHhhhC
Confidence             467899999999999999999999985433     2223  25899999999955 5665 999999887666553322


Q ss_pred             CCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          296 GGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       296 g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                      .+                    -.|.|....+++.+.++....+...+...+++.++++.+.+.|.+.
T Consensus       252 Pg--------------------~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~  299 (405)
T d1kl1a_         252 PG--------------------IQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE  299 (405)
T ss_dssp             TT--------------------TCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cc--------------------cccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC
Confidence            11                    2458899999999999987655456778888999999999999875

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=3.7e-17  Score=148.89  Aligned_cols=266  Identities=15%  Similarity=0.143  Sum_probs=185.6

Q ss_pred             CeEEeccCCCCCCcHHHHHHHHHHHHHhhc--cCCCCcchhhHHH-HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHH
Q 017640           67 KLVYLDNAATSQKPIAVLKALQNYYEAYNS--NVHRGIHFLSAKA-TDEYELARKKVAAFINASDSGEIVFTKNATEAIN  143 (368)
Q Consensus        67 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~  143 (368)
                      +.+.|-... ..+++.|++++...+..-+.  .|.. .++.|... .+...-..++..++||+... + +-..|++.|+.
T Consensus        27 ~~i~LiaSE-N~~S~~v~~a~~S~l~nkYaeG~pg~-Ryy~G~~~iD~iE~la~~ra~~lF~a~~a-n-Vqp~SGs~AN~  102 (416)
T d1dfoa_          27 EHIELIASE-NYTSPRVMQAQGSQLTNKYAEGYPGK-RYYGGCEYVDIVEQLAIDRAKELFGADYA-N-VQPHSGSQANF  102 (416)
T ss_dssp             HSEECCTTC-CCCCHHHHHHHTSGGGGCCCCEETTE-ESSSCCHHHHHHHHHHHHHHHHHHTCSEE-E-CCCSSHHHHHH
T ss_pred             cCceEecCc-ccCCHHHHHHhcCcccCcccCCCCCC-cccCCChhHHHHHHHHHHHHHHHhCCCcc-e-eecccCccHHH
Confidence            345554444 45788999988776654222  2321 23333333 44444467888889998732 3 33467778999


Q ss_pred             HHHHHccCCCCCCCCEEEEcCCCCcccHHHHHH-HHHHcCCEEEEEeCCCCCCCCHHHHHHhccc-CceEEEEccccccc
Q 017640          144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQL-VAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNML  221 (368)
Q Consensus       144 ~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~-~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~t  221 (368)
                      .++.++    ++|||+|+..+..|.+....... .+.....+.+..++++++.||.+++++.... +|++|++....+| 
T Consensus       103 av~~Al----l~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~IDyd~l~~~a~~~kPklIi~G~S~y~-  177 (416)
T d1dfoa_         103 AVYTAL----LEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGFSAYS-  177 (416)
T ss_dssp             HHHHHH----CCTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCSSSSBCHHHHHHHHHHHCCSEEEEECSSCC-
T ss_pred             HHHHHh----cCCCCeeeeccccccccccccccccccCceEEEEecccCCccCccHHHHHHHHHHhccceEEecccccc-
Confidence            999999    99999999998887775432111 0111134677778788889999999988754 8999998865544 


Q ss_pred             ccccCHHHHHHHHHhcCCEEEEecCCcCCcc-----cccCCCCCccEEEecCcCcC-CCCcceEEEEcc---cccccCCC
Q 017640          222 ASILPIEEIVHWSHDVGAKVLVDACQSVPHM-----VVDVQGLDADFLVASSHKMC-GPTGIGFLFGKS---DLLSAMPP  292 (368)
Q Consensus       222 G~~~~l~~i~~l~~~~g~~li~D~a~~~~~~-----~~~~~~~~~d~~~~s~~K~~-g~~G~G~l~~~~---~li~~l~~  292 (368)
                       ..+|++++.++|++.|.++++|.+|..|-+     +-.++  ..|++++|.||.| ||.| |+++.+.   ++.+++..
T Consensus       178 -r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~--~aDvvt~tThKtlrGPrg-giI~~~~~~~~~~~~i~~  253 (416)
T d1dfoa_         178 -GVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVP--HAHVVTTTTHKTLAGPRG-GLILAKGGSEELYKKLNS  253 (416)
T ss_dssp             -SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTT--TSSEEEEESSSTTCCCSC-EEEEESSCCHHHHHHHHH
T ss_pred             -cccCHHHHHHHHHhcCceEEcchhhhhcceeccccCCccc--ccceeeeehhhcccCCCc-eEEEeccchHhHHHHHHh
Confidence             688899999999999999999999986543     22222  3799999999965 5664 9999873   44333331


Q ss_pred             cccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          293 FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       293 ~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                      ....                    ...|.|....+++.+.++....+...+...+++.++++.+.+.|.+. |+
T Consensus       254 avfP--------------------g~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~-G~  306 (416)
T d1dfoa_         254 AVFP--------------------GGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLER-GY  306 (416)
T ss_dssp             HHTT--------------------TTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             hhCc--------------------ccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhC-Cc
Confidence            1111                    11357888899999999887655456788888999999999999876 44

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=8.6e-17  Score=147.77  Aligned_cols=171  Identities=20%  Similarity=0.204  Sum_probs=138.1

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEE
Q 017640          106 SAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANL  185 (368)
Q Consensus       106 ~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v  185 (368)
                      ++...+..+.++++++++-|.+   ..+.++++..|+..++ .+    +.+||.|++....|.+++..+.....+.|.++
T Consensus        50 sR~gnPT~~~lE~~la~LE~~~---~a~~~sSGmaAi~~~l-~~----l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~  121 (393)
T d1n8pa_          50 SRSQNPNRENLERAVAALENAQ---YGLAFSSGSATTATIL-QS----LPQGSHAVSIGDVYGGTHRYFTKVANAHGVET  121 (393)
T ss_dssp             TTTCCHHHHHHHHHHHHHTTCS---EEEEESCHHHHHHHHH-HT----SCSSCEEEEESSCCHHHHHHHHHTSTTTCSCC
T ss_pred             eCCCChHHHHHHHHHHHHhCCc---eEEEecCchhHHHhhh-hc----ccCCCeeeeeeeecccchhhhhhhhhccccee
Confidence            3334556668999999999875   4466666677886554 45    78899999999999999988888888889988


Q ss_pred             EEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHHHHHHHHH----hcCCEEEEecCCcCCcccccCCCCCc
Q 017640          186 KFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSH----DVGAKVLVDACQSVPHMVVDVQGLDA  261 (368)
Q Consensus       186 ~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~----~~g~~li~D~a~~~~~~~~~~~~~~~  261 (368)
                      .++..      +.+++++++++++++|+++.|.||+..+.|++.|+++||    ++|+++++|.+.+.+.. ...-++|.
T Consensus       122 ~~~~~------~~~~~~~~i~~~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVDnT~atP~~-~~Pl~~GA  194 (393)
T d1n8pa_         122 SFTND------LLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYI-SNPLNFGA  194 (393)
T ss_dssp             EEESS------HHHHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHH-CCGGGGTC
T ss_pred             EEeec------chHHHHHHhhhhcceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEEecCccCccc-CCchhhCC
Confidence            88763      567899999999999999999999999999999999999    67899999999875543 22225689


Q ss_pred             cEEEecCcCcCCCCc---ceEEEEccc-ccccCC
Q 017640          262 DFLVASSHKMCGPTG---IGFLFGKSD-LLSAMP  291 (368)
Q Consensus       262 d~~~~s~~K~~g~~G---~G~l~~~~~-li~~l~  291 (368)
                      |+++.|..|++++.+   +|.++.+++ +.+.++
T Consensus       195 DiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~  228 (393)
T d1n8pa_         195 DIVVHSATKYINGHSDVVLGVLATNNKPLYERLQ  228 (393)
T ss_dssp             SEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHH
T ss_pred             CEEEEccccccCCCCccccceeeecchhHHHHHH
Confidence            999999999998877   777776654 444444

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=99.69  E-value=2.3e-16  Score=146.54  Aligned_cols=286  Identities=16%  Similarity=0.092  Sum_probs=195.5

Q ss_pred             EeccCCCC-CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHH
Q 017640           70 YLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS  148 (368)
Q Consensus        70 ~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~  148 (368)
                      ++..+.+. ..|+.+ +.+...-..+..++.... ..+++..+.+-++++.++++.|.+.. +...-.|++.....++.+
T Consensus        68 fig~G~~~~~~p~~i-~~~~~~~~~~t~ytPyqp-E~sQG~Lq~l~e~q~~l~eltGmd~~-n~s~~~ga~a~~~~~~~~  144 (437)
T d1wyua1          68 FLGGGVRSHHVPPVV-QALAARGEFLTAYTPYQP-EVSQGVLQATFEYQTMIAELAGLEIA-NASMYDGATALAEGVLLA  144 (437)
T ss_dssp             CCCSSCCCCCCCHHH-HHHHTSHHHHHCCSCCSG-GGCHHHHHHHHHHHHHHHHHHTSSEE-CSCBSSHHHHHHHHHHHH
T ss_pred             ccCcccCCceeCHHH-HHHHhChhhhhhCCCcch-HHHHHHHHHHHHHHHHHHHhhCCCcc-ccCchHHHHHHHHHHHHH
Confidence            56666666 445554 555433333333322222 45678889999999999999999832 334556777666666655


Q ss_pred             ccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccccccCHH
Q 017640          149 WGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIE  228 (368)
Q Consensus       149 ~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~  228 (368)
                      .   ...+++.+++....|++........++..|.+++.++.++++..+ +    .+.+++.+|++++|++ .|...+++
T Consensus       145 ~---~~~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~~~~~~~-~----~~~~~~Aavmi~~Pnt-~G~~ed~~  215 (437)
T d1wyua1         145 L---RETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGRTPL-P----EVGEEVGAVVVQNPNF-LGALEDLG  215 (437)
T ss_dssp             H---HHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTBCCC-C----CCCTTEEEEEEESSCT-TSBCCCHH
T ss_pred             H---hhhcccccccccccChHHhhhhhhhcccceeeEEeeecccccchh-h----hhccceeEEEEccccc-cccccchH
Confidence            4   245677899999999998888888888999999999987554322 2    2567899999999955 69999999


Q ss_pred             HHHHHHHhcCCEEEEecCCcCCcccccCCCCCccEEEecCcCc-----CCCCcceEEEEcccccccCCCcccCCcceeec
Q 017640          229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKM-----CGPTGIGFLFGKSDLLSAMPPFLGGGEMISDV  303 (368)
Q Consensus       229 ~i~~l~~~~g~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~-----~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~  303 (368)
                      +|.+++|+.|.++++|+.-..-..-....+++.|+++++.+++     ||++|.|++.+++++.+.+.....|......-
T Consensus       216 ~i~~~~h~~G~l~~~~ad~~al~~l~~Pg~~GaDi~~g~~q~fg~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G  295 (437)
T d1wyua1         216 PFAEAAHGAGALFVAVADPLSLGVLKPPGAYGADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEG  295 (437)
T ss_dssp             HHHHHHHHTTCEEEEECCTTGGGTBCCHHHHTCSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTS
T ss_pred             HHHHHhhhccceEEeeechhhhhccccccccccceEeeccceeccccCCCcCccccccccchhhccccccccccccccCC
Confidence            9999999999988877654321111234567899999994443     44556899999999998888777653221100


Q ss_pred             c---cCCCCCCCCCCCCC-----CCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          304 F---LDHSTFADPPSRFE-----AGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       304 ~---~~~~~~~~~~~~~~-----~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      .   .......+.+-|.+     ..|-+..........+.++...|++.+.++...+++|+.+.|.+++|++
T Consensus       296 ~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~~g~~  367 (437)
T d1wyua1         296 RRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVR  367 (437)
T ss_dssp             CEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCE
T ss_pred             cccceeecccccccccccccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhcCCee
Confidence            0   00001111111222     2344444555556667777788999999999999999999999887753

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.67  E-value=2.8e-16  Score=141.99  Aligned_cols=260  Identities=12%  Similarity=-0.034  Sum_probs=166.2

Q ss_pred             EeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHc
Q 017640           70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSW  149 (368)
Q Consensus        70 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~  149 (368)
                      .|.+..+++++|.|+++++++...         +..++...+..+++|+.+++++|.+  ..++||+|+|+|+..++.++
T Consensus         6 ~f~s~n~~g~~P~v~~A~~~a~~~---------~~~~~~~~~~~~~l~~~la~~~g~~--~~v~f~~sGt~An~~a~~~~   74 (345)
T d1v72a1           6 GFSSDNIAGASPEVAQALVKHSSG---------QAGPYGTDELTAQVKRKFCEIFERD--VEVFLVPTGTAANALCLSAM   74 (345)
T ss_dssp             BCSCGGGCCCCHHHHHHHHHTTSS---------CCCSTTCSHHHHHHHHHHHHHHTSC--CEEEEESCHHHHHHHHHHTS
T ss_pred             CcCCCCCCCCCHHHHHHHHHHhcc---------CccccCCCHHHHHHHHHHHHHHCCC--cEEEECCchHHHHHHHHHHH
Confidence            444444556789999998765321         1122233567889999999999986  37999999999999999877


Q ss_pred             cCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccC------c-eEEEEcccccccc
Q 017640          150 GLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRK------T-KLVVIHHISNMLA  222 (368)
Q Consensus       150 ~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~------~-~~v~~~~~~n~tG  222 (368)
                          ..+++.+++....|.+...... .....+..+..++...++..+++.++..+...      + ..++.....++.|
T Consensus        75 ----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (345)
T d1v72a1          75 ----TPPWGNIYCHPASHINNDECGA-PEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVG  149 (345)
T ss_dssp             ----CCTTEEEEECTTSHHHHSSTTH-HHHHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTS
T ss_pred             ----HhcCCccccccccceeeechhh-HHHhcCcccccccccccccccHHHhhhhhcccccccccccceeeeeecccccc
Confidence                7888888888888777654433 33455777888877778889999999998753      2 2455555666677


Q ss_pred             cccC---HHHHHHHHHhcCCEEEEecCCcCCccccc---C----CCCCccEEEecCcCcCCCCcceEEEEcccccccCCC
Q 017640          223 SILP---IEEIVHWSHDVGAKVLVDACQSVPHMVVD---V----QGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPP  292 (368)
Q Consensus       223 ~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~~~~---~----~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~  292 (368)
                      ...+   ++++.++|++||+++++|+++..+....+   .    .....+..+.+.+|..+..+.+.+............
T Consensus       150 ~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (345)
T d1v72a1         150 SIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATEMSY  229 (345)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSSCEEEEESSGGGHHHHHH
T ss_pred             ccccchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCccccccccccccccchhhhhhhccc
Confidence            6655   67788899999999999999874333211   1    112345556665554444333333333322211111


Q ss_pred             cccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          293 FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       293 ~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      ..                     .+..++.+. ...++..+..............+..++..++.+.+.+++|++
T Consensus       230 ~~---------------------~~~~~~~~~-~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~  282 (345)
T d1v72a1         230 RR---------------------KRAGHLSSK-MRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVE  282 (345)
T ss_dssp             HH---------------------HHTTCCCSS-THHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEE
T ss_pred             cc---------------------cccccccch-hhHHhhhhHHHHHHhhhhhhccchhhHHHHHHHHHHhcCCcE
Confidence            00                     011112222 223333344444444556777788888889999998887753

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=99.66  E-value=2.9e-15  Score=138.53  Aligned_cols=257  Identities=14%  Similarity=0.118  Sum_probs=178.4

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..+      .|...|.+.+++.++++.....+..   ..    .+...++.+.+.+...... +.+.|+++++
T Consensus        35 dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~~~~~~~~---~~----~~~~~~la~~l~~~~~~~~-~~v~f~~sGs  106 (387)
T d1vefa1          35 EGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQT---LP----TPMRGEFYRTLTAILPPEL-NRVFPVNSGT  106 (387)
T ss_dssp             TSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTT---SC----CHHHHHHHHHHHHTSCTTE-EEEEEESSHH
T ss_pred             CCCEEEEcchhHHhhhhcCCcHHHHHHHHHHHHhhcccccc---cC----CchHHHHHHHhhhhccccc-eeeccccCch
Confidence            4445777643      6678999999999998875332221   11    1222344444555444332 3789999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHH-----H-Hc---CCEEEEEeCCCCCCCCHHHHHHhcccCce
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVA-----Q-KT---GANLKFLNLNDDESPDLDKLKEMLSRKTK  210 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~-----~-~~---g~~v~~v~~~~~~~~d~~~l~~~l~~~~~  210 (368)
                      +|++.+++..+.  ......|+.....||+.......+.     + ..   ...+..+|.+     |++.|++.+.+++.
T Consensus       107 eA~e~Aik~Ar~--~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~~-----d~~~l~~~~~~~iA  179 (387)
T d1vefa1         107 EANEAALKFARA--HTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYN-----DVEALKRAVDEETA  179 (387)
T ss_dssp             HHHHHHHHHHHH--HHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTT-----CHHHHHHHCCTTEE
T ss_pred             HHHHHHHHHHHh--hcccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCCC-----CHHHHHHhcCCCeE
Confidence            999999987532  3456688888888887654333221     0 00   1234556654     89999999999999


Q ss_pred             EEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCccc----ccCCCCCccEEEecCcCcCC-CCcceEE
Q 017640          211 LVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLDADFLVASSHKMCG-PTGIGFL  280 (368)
Q Consensus       211 ~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~~----~~~~~~~~d~~~~s~~K~~g-~~G~G~l  280 (368)
                      +|+++......|...+    +++|.++|++||+++|+||+++ +|..-    .......+|+++.+  |.+| +..++.+
T Consensus       180 avi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v~PDi~~~g--K~l~gG~~~~~~  257 (387)
T d1vefa1         180 AVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLA--KALGGGVPLGVA  257 (387)
T ss_dssp             EEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEEC--GGGGTTSSCEEE
T ss_pred             EEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCcccccCCcCCceeeec--ccCCCCcccccc
Confidence            9999999988898877    9999999999999999999986 43331    11123468999988  8553 2236778


Q ss_pred             EEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Q 017640          281 FGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVI  360 (368)
Q Consensus       281 ~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l  360 (368)
                      +.+++..+.+.+...|.+.                     +.|..+.++..+.++.+++   +.+.+++.++.+++.+.|
T Consensus       258 ~~~~~~~~~~~~~~~g~T~---------------------~gnPla~aaa~a~L~~l~~---~~~~~~v~~~g~~l~~~L  313 (387)
T d1vefa1         258 VMREEVARSMPKGGHGTTF---------------------GGNPLAMAAGVAAIRYLER---TRLWERAAELGPWFMEKL  313 (387)
T ss_dssp             EEEHHHHHTSCTTSSCCSS---------------------TTCHHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHH
T ss_pred             ccceeeeeccccCCccccC---------------------CCCcchhhhcccchhhccc---ccccchHhhhhHHHHHHH
Confidence            8888887777666544332                     5577888888888888877   445677778888888888


Q ss_pred             Hhh
Q 017640          361 QER  363 (368)
Q Consensus       361 ~~~  363 (368)
                      +++
T Consensus       314 ~~l  316 (387)
T d1vefa1         314 RAI  316 (387)
T ss_dssp             HTS
T ss_pred             Hhc
Confidence            764

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.66  E-value=5.5e-16  Score=142.76  Aligned_cols=264  Identities=14%  Similarity=0.085  Sum_probs=168.1

Q ss_pred             EEeccCCCCCCcHHHHHHHHHHHHHhhc--cCCCCcchhhHHH-HHHHHHHHHHHHHHcCCCCCCc-E-EEeCCHHHHHH
Q 017640           69 VYLDNAATSQKPIAVLKALQNYYEAYNS--NVHRGIHFLSAKA-TDEYELARKKVAAFINASDSGE-I-VFTKNATEAIN  143 (368)
Q Consensus        69 i~l~~~~~~~~~~~v~~a~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~r~~la~~~~~~~~~~-v-~~t~g~t~a~~  143 (368)
                      +.|=.+. ..+++.|++++...+..-+.  .|.. .++.|... .+...-.+++..++|+++..+. | +-..|++.|+.
T Consensus        30 l~LiaSE-N~~S~~v~~algS~l~nkYaeG~pg~-Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~An~  107 (463)
T d2a7va1          30 LELIASE-NFCSRAALEALGSCLNNKYSEGYPGK-RYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANL  107 (463)
T ss_dssp             EECCTTC-CCCCHHHHHHHTSGGGTCCCCC-------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHH
T ss_pred             eeEeccC-CcCCHHHHHHhcchhcccccCCCCCc-cccCCchhHHHHHHHHHHHHHHHhCCCchhccCCccccccHHHHH
Confidence            4554433 46788898888766653221  2221 22222222 3444446888999999986531 2 44467788999


Q ss_pred             HHHHHccCCCCCCCCEEEEcCCCCcccHHHHH----HHHHHcCC--EEEEEeCC-CCCCCCHHHHHHhccc-CceEEEEc
Q 017640          144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQ----LVAQKTGA--NLKFLNLN-DDESPDLDKLKEMLSR-KTKLVVIH  215 (368)
Q Consensus       144 ~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~----~~~~~~g~--~v~~v~~~-~~~~~d~~~l~~~l~~-~~~~v~~~  215 (368)
                      .+..++    ++|||+|+..+..+.+...--.    .-....|.  +...+.++ +++.||.+++++.... +|++|++.
T Consensus       108 av~~al----l~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~IDyd~~~~~a~~~kPklIi~G  183 (463)
T d2a7va1         108 AVYTAL----LQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAG  183 (463)
T ss_dssp             HHHHHH----CCSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEEC
T ss_pred             HHHHHH----cCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcCcHHHHHHHHhhcCCceEEec
Confidence            999999    9999999988776655432110    00111232  33444445 4588999999998765 89999988


Q ss_pred             ccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcc-----cccCCCCCccEEEecCcCc-CCCCcceEEEEcccccc-
Q 017640          216 HISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM-----VVDVQGLDADFLVASSHKM-CGPTGIGFLFGKSDLLS-  288 (368)
Q Consensus       216 ~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~-----~~~~~~~~~d~~~~s~~K~-~g~~G~G~l~~~~~li~-  288 (368)
                      ...+|  ..+|++++.++|++.|.++++|.+|-.|-+     +-.+  ...|++++|.||. .||.| |+++++++... 
T Consensus       184 ~S~y~--r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~--~~aDvvt~tTHKTlrGPrg-GiIl~~~~~~~~  258 (463)
T d2a7va1         184 TSAYA--RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPF--KHADIVTTTTHKTLRGARS-GLIFYRKGVKAV  258 (463)
T ss_dssp             CSSCC--SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGG--GTCSEEEEESSGGGCSCSC-EEEEEECSEEEE
T ss_pred             ccccc--cccCHHHHHHHhhcccceEEechhhhhHHhhhhhhcChh--hhhhhhhchhhhhhcCCCc-eEEEEccccccc
Confidence            87776  477899999999999999999999985433     2222  2479999999995 56665 99998875321 


Q ss_pred             --------------cCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Q 017640          289 --------------AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWII  354 (368)
Q Consensus       289 --------------~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~  354 (368)
                                    ++.....                    ---.|.|....++|.+.++....+...+...+++.++++
T Consensus       259 ~~~~~~~~~~~~~~~i~~avF--------------------Pg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk  318 (463)
T d2a7va1         259 DPKTGREIPYTFEDRINFAVF--------------------PSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNAR  318 (463)
T ss_dssp             ETTTEEEEECCCHHHHHHHHT--------------------TTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred             ccccCccchhHHHHHhhhhcC--------------------cccchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence                          1111110                    112468899999999999988766557788888999999


Q ss_pred             HHHHHHHhh
Q 017640          355 CSIIVIQER  363 (368)
Q Consensus       355 ~l~~~l~~~  363 (368)
                      .+.+.|.+.
T Consensus       319 ~La~~L~~~  327 (463)
T d2a7va1         319 AMADALLER  327 (463)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhC
Confidence            999988876

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.66  E-value=1.1e-15  Score=141.34  Aligned_cols=265  Identities=14%  Similarity=0.072  Sum_probs=184.1

Q ss_pred             eEEeccCCCCCCcHHHHHHHHHHHHHhh--ccCCCCcchhhHH-HHHHHHHHHHHHHHHcCCCCCC-cE-EEeCCHHHHH
Q 017640           68 LVYLDNAATSQKPIAVLKALQNYYEAYN--SNVHRGIHFLSAK-ATDEYELARKKVAAFINASDSG-EI-VFTKNATEAI  142 (368)
Q Consensus        68 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~r~~la~~~~~~~~~-~v-~~t~g~t~a~  142 (368)
                      .+.|=... ..+++.|++++...+..-+  +.|.. .++.|.. ..+......++..++||+++.. .+ +-..|++.|+
T Consensus        33 ~l~LIaSE-N~~S~~v~~algS~l~nkYaeG~pg~-Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An  110 (470)
T d1rv3a_          33 GLELIASE-NFASRAVLEALGSCLNNKYSLGYPGQ-RYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPAN  110 (470)
T ss_dssp             SEECCTTC-CCCCHHHHHHHTSGGGTCCCCEETTE-ESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHH
T ss_pred             CceEecCC-CcCCHHHHHHhcchhcccccCCCCCc-cccCCchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHH
Confidence            34554433 4678899998877665422  23322 2233333 3445555778889999997432 22 3446888999


Q ss_pred             HHHHHHccCCCCCCCCEEEEcCCCCcccHHHH------HHHHHHcCCEEEEEeCCCC-CCCCHHHHHHhccc-CceEEEE
Q 017640          143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPW------QLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSR-KTKLVVI  214 (368)
Q Consensus       143 ~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~------~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~l~~-~~~~v~~  214 (368)
                      ..+..++    ++|||+|+..+..+.+...--      .........+....+++++ +.||.+++++.... +|++|++
T Consensus       111 ~av~~al----l~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~~~IDyd~l~~~a~~~kPklIi~  186 (470)
T d1rv3a_         111 FAVYTAL----VEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIA  186 (470)
T ss_dssp             HHHHHHH----TCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEE
T ss_pred             HHHHHHh----cCCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEecccCcccHHHHHHHHHhhCcceEee
Confidence            9999999    999999998876554432110      0000111356778888855 89999999998765 8999999


Q ss_pred             cccccccccccCHHHHHHHHHhcCCEEEEecCCcCCcc-----cccCCCCCccEEEecCcCcC-CCCcceEEEEcccccc
Q 017640          215 HHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM-----VVDVQGLDADFLVASSHKMC-GPTGIGFLFGKSDLLS  288 (368)
Q Consensus       215 ~~~~n~tG~~~~l~~i~~l~~~~g~~li~D~a~~~~~~-----~~~~~~~~~d~~~~s~~K~~-g~~G~G~l~~~~~li~  288 (368)
                      ....+|  ..+|++++.++|++.|+++++|.+|-.|-+     +-.+  ...|++++|.||.| ||.| |+++++++.-.
T Consensus       187 G~S~y~--r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl--~~aDvvt~tTHKtlrGPrg-GiI~~~~~~~~  261 (470)
T d1rv3a_         187 GTSCYS--RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPF--EHCHVVTTTTHKTLRGCRA-GMIFYRRGVRS  261 (470)
T ss_dssp             CCSSCC--SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGG--GTCSEEEEESSGGGCCCSC-EEEEEECSBCC
T ss_pred             chhhcc--ccCCHHHHHHHHhccCCeEEecchhhhhhccccccCChh--heeeeeeeehhhhccCCcc-eEEEEcccccc
Confidence            887776  477899999999999999999999986543     2222  24799999999965 6775 99998875321


Q ss_pred             ---------------cCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Q 017640          289 ---------------AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWI  353 (368)
Q Consensus       289 ---------------~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~  353 (368)
                                     ++.....                    -.-.|.|....++|.+.++....+...+...+++.+++
T Consensus       262 ~~~~~~~~~~~~~~~~i~~avF--------------------Pg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NA  321 (470)
T d1rv3a_         262 VDPKTGKEILYNLESLINSAVF--------------------PGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANC  321 (470)
T ss_dssp             -------CCBCCHHHHHHHHHT--------------------TTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred             ccccccchhHHHHHHHHhhhcC--------------------ccccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence                           1111100                    11246889999999999998876544677888888999


Q ss_pred             HHHHHHHHhh
Q 017640          354 ICSIIVIQER  363 (368)
Q Consensus       354 ~~l~~~l~~~  363 (368)
                      +.+.+.|.+.
T Consensus       322 k~La~~L~~~  331 (470)
T d1rv3a_         322 RALSAALVEL  331 (470)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhC
Confidence            9999988876

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.62  E-value=1.5e-15  Score=143.41  Aligned_cols=221  Identities=18%  Similarity=0.165  Sum_probs=150.3

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEe
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN  189 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  189 (368)
                      .+...++++.+++++|.+   .++++++||.|+..++.++    +++||+|+.... +.+    ........|+.++.+.
T Consensus        74 dpt~~~lE~~~a~l~G~e---~al~~~SGt~An~~a~~~l----~~~Gd~Vi~~~~-f~~----~~~~i~~~g~~~~~~~  141 (456)
T d1c7ga_          74 SENFYHLEKTVKELFGFK---HIVPTHQGRGAENLLSQLA----IKPGQYVAGNMY-FTT----TRFHQEKNGATFVDIV  141 (456)
T ss_dssp             CHHHHHHHHHHHHHHCCS---EEEEESSHHHHHHHHHHHH----CCTTEEEEESSC-CHH----HHHHHHHTTEEEEECB
T ss_pred             CchHHHHHHHHHHHhCCC---eEEECCCHHHHHHHHHHHh----cCCCCeEecCcc-hHH----HHHHHHHcCceeeecc
Confidence            456678999999999997   6799999999999999998    899999886654 222    2223345688877665


Q ss_pred             CC----------CCCCCCHHHHHHhccc----CceEEEEcccccccc-cccC---HHHHHHHHHhcCCEEEEecCCcCCc
Q 017640          190 LN----------DDESPDLDKLKEMLSR----KTKLVVIHHISNMLA-SILP---IEEIVHWSHDVGAKVLVDACQSVPH  251 (368)
Q Consensus       190 ~~----------~~~~~d~~~l~~~l~~----~~~~v~~~~~~n~tG-~~~~---l~~i~~l~~~~g~~li~D~a~~~~~  251 (368)
                      .+          .++.+|++.|++.|++    ++.++++++++|+.| ..+|   +++|.++|++||+.+++|+++..+.
T Consensus       142 ~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~  221 (456)
T d1c7ga_         142 RDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVEN  221 (456)
T ss_dssp             CGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHH
T ss_pred             ccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcc
Confidence            42          2378899999999975    346899999999865 5555   6788999999999999999987542


Q ss_pred             c------cccCCC-----------CCccEEEecCcCcCCCCcceEEEEccc-ccccCCCcc--cCCcceeecccCCCCCC
Q 017640          252 M------VVDVQG-----------LDADFLVASSHKMCGPTGIGFLFGKSD-LLSAMPPFL--GGGEMISDVFLDHSTFA  311 (368)
Q Consensus       252 ~------~~~~~~-----------~~~d~~~~s~~K~~g~~G~G~l~~~~~-li~~l~~~~--~g~~~~~~~~~~~~~~~  311 (368)
                      .      ......           ...|.+++|++|.++.++.|+++.+++ +.++++...  .++.             
T Consensus       222 a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~GG~i~~~~~~l~~~~r~~~~~~~g~-------------  288 (456)
T d1c7ga_         222 AYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDEEMFSAAKELVVVYEGM-------------  288 (456)
T ss_dssp             HHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSCEEEEESCHHHHHHHHHHHHHHTCC-------------
T ss_pred             hhhhcccccccCCCChhhhccccccccccEEEeccccccccceeEEEcCCHHHHHHHHHhccccCCC-------------
Confidence            1      001110           137999999999887665688887764 444443221  1111             


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          312 DPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       312 ~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                           ...|..+...+.++...+...  .+.+. .++..+..+++.+.|.++
T Consensus       289 -----~~~g~~~~~~~~a~a~~l~e~--~~~~~-l~~r~~~~~~L~e~L~~~  332 (456)
T d1c7ga_         289 -----PSYGGLAGRDMEAMAIGLREA--MQYEY-IEHRVKQVRYLGDKLREA  332 (456)
T ss_dssp             -----TTTTTCCHHHHHHHHHHHHHH--TCHHH-HHHHHHHHHHHHHHHHHT
T ss_pred             -----cccchhhHHHHHHHHHHHHHh--cCHHH-HHHHHHHHHHHHHHHHhc
Confidence                 112345555555555444433  23333 344456668888888775

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=99.60  E-value=1.6e-14  Score=135.40  Aligned_cols=256  Identities=16%  Similarity=0.101  Sum_probs=165.1

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|||..+      .|..+|.|.+++++.++.......    .     ......+.+.+.+..+..  +.+.|+++++
T Consensus        50 ~G~~ylD~~~~~~~~~lGh~hp~i~~ai~~~~~~~~~~~~----~-----~~~~~~la~~~~~~~~~~--~~v~f~~sGs  118 (427)
T d2gsaa_          50 DGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGA----P-----CALENVLAEMVNDAVPSI--EMVRFVNSGT  118 (427)
T ss_dssp             TSCEEEESSGGGTTTTTCBTCHHHHHHHHHHHTTCSCCSS----C-----CHHHHHHHHHHHHHSTTC--SEEEEESSHH
T ss_pred             CCCEEEEechhHHHHhccCCcHHHHHHHHHHHHhcCcccc----c-----hhHHHHHHHHHHhhCCcc--ccccccCCcH
Confidence            4556777643      456799999999998875321111    1     122234566666666533  4889999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHH----HHHcC------------CEEEEEeCCCCCCCCHHHHHH
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLV----AQKTG------------ANLKFLNLNDDESPDLDKLKE  203 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~----~~~~g------------~~v~~v~~~~~~~~d~~~l~~  203 (368)
                      +|++.+++..+.  ...++.|+.....||+........    ....+            .+...++..     |++.+++
T Consensus       119 eA~e~Alk~ar~--~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-----~~~~le~  191 (427)
T d2gsaa_         119 EACMAVLRLMRA--YTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN-----DLEAVKA  191 (427)
T ss_dssp             HHHHHHHHHHHH--HHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECTT-----CHHHHHH
T ss_pred             HHHHHHHHHHHH--hcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccCcc-----hHHHHHH
Confidence            999999987532  345678898888888743211100    00111            122333333     8999999


Q ss_pred             hccc---CceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCcC-Ccc---cccCCCCCccEEEecCcCcC
Q 017640          204 MLSR---KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQSV-PHM---VVDVQGLDADFLVASSHKMC  272 (368)
Q Consensus       204 ~l~~---~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~~-~~~---~~~~~~~~~d~~~~s~~K~~  272 (368)
                      .+++   ++.+|+++......|.+.|    +++|.++|++||+++|+||++.. ..-   ..+.....+|+++.+  |.+
T Consensus       192 ~~~~~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r~g~~~~~~~~gi~PDi~~~g--K~l  269 (427)
T d2gsaa_         192 LFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIAYGGVQEKFGVTPDLTTLG--KII  269 (427)
T ss_dssp             HHTTSTTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTCHHHHTTCCCSEEEEC--GGG
T ss_pred             HHHhCCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccceecccchHHhcCCCHHHHhhh--hcc
Confidence            9974   5689999999988899888    99999999999999999999962 111   111223468999988  744


Q ss_pred             CC-CcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Q 017640          273 GP-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVK  351 (368)
Q Consensus       273 g~-~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~  351 (368)
                      |. ..+|.+++++++.+.+.+....                  ........+..+.++..++++.+++.+   +.+++++
T Consensus       270 ggG~p~~a~~~~~~i~~~~~~~~~~------------------~~~~T~~gnpla~AAala~Le~i~~~~---l~~~~~~  328 (427)
T d2gsaa_         270 GGGLPVGAYGGKREIMQLVAPAGPM------------------YQAGTLSGNPLAMTAGIKTLELLRQPG---TYEYLDQ  328 (427)
T ss_dssp             GTTSCCEEEEECHHHHTTBTTTSSB------------------CCCCTTTTCHHHHHHHHHHHHHHTSTT---HHHHHHH
T ss_pred             CCCcceeeeeehHHHHHHhcccCCC------------------cCCCCCCCCchhhHHHHHhhHHhhhhh---HHhhhhH
Confidence            32 2267788899988776542110                  011122567777888888888887744   3455555


Q ss_pred             HHHHHHHHHHh
Q 017640          352 WIICSIIVIQE  362 (368)
Q Consensus       352 l~~~l~~~l~~  362 (368)
                      +.+++.+.|++
T Consensus       329 ~g~~l~~~L~~  339 (427)
T d2gsaa_         329 ITKRLSDGLLA  339 (427)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555555543

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.1e-13  Score=126.63  Aligned_cols=257  Identities=11%  Similarity=0.088  Sum_probs=174.8

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..+      .|+.+|.+.+++.+.++.+...+. ..+      ......+.+.++++.+.+   .+.++++++
T Consensus        39 dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~---~v~~~~sGs  108 (404)
T d2byla1          39 EGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSR-AFY------NNVLGEYEEYITKLFNYH---KVLPMNTGV  108 (404)
T ss_dssp             TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCT-TEE------ESSHHHHHHHHHHHHTCS---EEEEESSHH
T ss_pred             CCCEEEEecCCHHHHhhcCCCHHHHHHHHHHHhhCCCccc-ccc------cchHHHHHHhhhhccccc---ccccccCcc
Confidence            4556887642      467899999999998876432221 111      122334666777777663   889999999


Q ss_pred             HHHHHHHHHccCC------CCCCCCEEEEcCCCCcccHHHHHHH----HHHcC-----CEEEEEeCCCCCCCCHHHHHHh
Q 017640          140 EAINLVAYSWGLS------NLKSGDEVILTVAEHHSAIVPWQLV----AQKTG-----ANLKFLNLNDDESPDLDKLKEM  204 (368)
Q Consensus       140 ~a~~~~~~~~~~~------~~~~gd~vl~~~~~~~s~~~~~~~~----~~~~g-----~~v~~v~~~~~~~~d~~~l~~~  204 (368)
                      +|+..+++..+..      ....+..++.....|++........    ....+     ..+..+|.+     |++++++.
T Consensus       109 eA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~~-----d~~~l~~~  183 (404)
T d2byla1         109 EAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYN-----DLPALERA  183 (404)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECTT-----CHHHHHHH
T ss_pred             ccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEeccc-----CHHHHHHh
Confidence            9999999875210      1123346777777777643221111    00001     124455554     89999999


Q ss_pred             ccc-CceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEEecCcCcCCC
Q 017640          205 LSR-KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGP  274 (368)
Q Consensus       205 l~~-~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~g~  274 (368)
                      +.. +..+|+++......|.+.|    +++|.++|++||+++|+||++. +|..    ..+.....+|+++.+  |.+|.
T Consensus       184 l~~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~a~~~~gv~PDi~~~g--K~l~g  261 (404)
T d2byla1         184 LQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLG--KALSG  261 (404)
T ss_dssp             HTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGT
T ss_pred             cCCCCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccchhhhcCCCCCEEEEC--chhhC
Confidence            865 6788999999988898877    9999999999999999999986 3332    122223458999766  96543


Q ss_pred             --CcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Q 017640          275 --TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKW  352 (368)
Q Consensus       275 --~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l  352 (368)
                        ..+|.+++++++.+.+.+...+++.                     +.+..+.++..+.|+.+++.   .+.++..++
T Consensus       262 G~~p~~av~~~~~i~~~~~~~~~~~T~---------------------~gnpl~~aaa~a~L~~i~~~---~l~~~~~~~  317 (404)
T d2byla1         262 GLYPVSAVLCDDDIMLTIKPGEHFSTY---------------------GGNPLGCRVAIAALEVLEEE---NLAENADKL  317 (404)
T ss_dssp             TSSCCEEEEECHHHHTTSCTTSSCCSS---------------------TTCHHHHHHHHHHHHHHHHT---THHHHHHHH
T ss_pred             CCccceeeeechhhhhccCCCCCCcCC---------------------CcCHHHHHHHHHHHHHHHhc---CchhhhhHh
Confidence              2389999999988877765543322                     56778888888889988874   456777778


Q ss_pred             HHHHHHHHHhh
Q 017640          353 IICSIIVIQER  363 (368)
Q Consensus       353 ~~~l~~~l~~~  363 (368)
                      ..++.+.|.++
T Consensus       318 g~~l~~~l~~l  328 (404)
T d2byla1         318 GIILRNELMKL  328 (404)
T ss_dssp             HHHHHHHHHTS
T ss_pred             hHHHHHHHHhh
Confidence            88888888764

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=5.5e-14  Score=131.65  Aligned_cols=263  Identities=11%  Similarity=0.039  Sum_probs=167.9

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|||..+      .|+.+|.+.+++.+.+.........+      ...+...++.+.+.+++.....+.++|+++++
T Consensus        38 dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~------~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGs  111 (425)
T d1sffa_          38 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQV------LAYEPYLELCEIMNQKVPGDFAKKTLLVTTGS  111 (425)
T ss_dssp             TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTT------EECHHHHHHHHHHHHHSSCSSCEEEEEESSHH
T ss_pred             CCCEEEEcCcCHHhhcccCCcHHHHHHHHHHHhhcCCccccc------ccCcHHHHHHHHHHhhhhhcccceeeeecccc
Confidence            4455777543      56789999999999887643211111      11233446778888888654334789999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcC----------CEEEEEeCC--CCCCC------CHHHH
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTG----------ANLKFLNLN--DDESP------DLDKL  201 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g----------~~v~~v~~~--~~~~~------d~~~l  201 (368)
                      +|++.+++..+.  ....+.|+.....||+.......+.....          ......+.+  .....      +.+.+
T Consensus       112 eA~e~Alk~ar~--~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (425)
T d1sffa_         112 EAVENAVKIARA--ATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRI  189 (425)
T ss_dssp             HHHHHHHHHHHH--HHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHH
T ss_pred             chhhhHHHHhhh--hhcccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHH
Confidence            999999987632  34567889999999987654443321000          011122211  01111      01111


Q ss_pred             HHhc--ccCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCcC-Ccc----cccCCCCCccEEEecCcC
Q 017640          202 KEML--SRKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQSV-PHM----VVDVQGLDADFLVASSHK  270 (368)
Q Consensus       202 ~~~l--~~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~~-~~~----~~~~~~~~~d~~~~s~~K  270 (368)
                      ....  ..++.+|+++..+...|.+.|    ++.|.++|++||+++|+||+++- |..    ..+.....+|+++.+  |
T Consensus       190 ~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv~PDi~~~g--K  267 (425)
T d1sffa_         190 FKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFA--K  267 (425)
T ss_dssp             HHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEEEC--G
T ss_pred             HHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHHHhcCCCccceecc--c
Confidence            1111  125689999999888888776    89999999999999999999882 332    112233569999877  9


Q ss_pred             cCCC-CcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH
Q 017640          271 MCGP-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYE  349 (368)
Q Consensus       271 ~~g~-~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~  349 (368)
                      .+|. ..+|.+++++++.+.+.+...+.+.                     +.+..+.+++.++|+.+++.   .+.++.
T Consensus       268 ~l~gG~P~~av~~~~~i~~~~~~~~~~~T~---------------------~gnpl~~aaa~a~L~~i~~~---~~~~~~  323 (425)
T d1sffa_         268 SIAGGFPLAGVTGRAEVMDAVAPGGLGGTY---------------------AGNPIACVAALEVLKVFEQE---NLLQKA  323 (425)
T ss_dssp             GGGTSSCCEEEEEEHHHHTTSCTTSBCCSS---------------------SSCHHHHHHHHHHHHHHHHT---THHHHH
T ss_pred             ccCCCcceEEEEEcHHHHHhhCCCCCCCCC---------------------CcCHHHHHHHHHHHHHHHHh---hhhhhh
Confidence            5542 2389999999988877665443322                     56777888888888888874   344555


Q ss_pred             HHHHHHHHHHHHh
Q 017640          350 VKWIICSIIVIQE  362 (368)
Q Consensus       350 ~~l~~~l~~~l~~  362 (368)
                      ..+.+++.+.+.+
T Consensus       324 ~~~g~~l~~~l~~  336 (425)
T d1sffa_         324 NDLGQKLKDGLLA  336 (425)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhh
Confidence            5555666555543

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.55  E-value=1.5e-14  Score=130.57  Aligned_cols=203  Identities=15%  Similarity=0.151  Sum_probs=134.4

Q ss_pred             EEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHH
Q 017640           69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS  148 (368)
Q Consensus        69 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~  148 (368)
                      +.|-..+-+.++|++++|+.+.      +...+.+    +..+...++++.+|+++|.+   .+++++|||+|+..++.+
T Consensus         2 ~~~~~~~~t~p~p~v~~A~~~a------~~g~~~y----g~~p~~~~le~~lA~~~G~~---~~~~~~sGt~A~~~al~a   68 (343)
T d1m6sa_           2 IDLRSDTVTKPTEEMRKAMAQA------EVGDDVY----GEDPTINELERLAAETFGKE---AALFVPSGTMGNQVSIMA   68 (343)
T ss_dssp             EECSCGGGCCCCHHHHHHHHTC------CCCCGGG----TCCHHHHHHHHHHHHHTTCS---EEEEESCHHHHHHHHHHH
T ss_pred             cccccccCCCCCHHHHHHHHhh------hcCCccc----CCCHHHHHHHHHHHHHHCCC---eEEEeCCHHHHHHHHHHH
Confidence            3443333345578899998543      1111111    12356678999999999975   678999999999999999


Q ss_pred             ccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccC------ce-EEEEccccccc
Q 017640          149 WGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRK------TK-LVVIHHISNML  221 (368)
Q Consensus       149 ~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~------~~-~v~~~~~~n~t  221 (368)
                      +    .++||.+++..+.|.+...... .+...+..++.++. ..+..|++.+++.+...      +. +++.+.++++.
T Consensus        69 ~----~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  142 (343)
T d1m6sa_          69 H----TQRGDEVILEADSHIFWYEVGA-MAVLSGVMPHPVPG-KNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSG  142 (343)
T ss_dssp             H----CCTTCEEEEETTCHHHHSSTTH-HHHHTCCEEEEECE-ETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTT
T ss_pred             H----hccCCceeccccccceeeeccc-ccccccceeecccc-ccCccCHHHHHHhhhhhhcccccccccccccccccCC
Confidence            8    8899999999998776443222 23344556665554 34556999999998753      33 55666677778


Q ss_pred             ccccC---HHHHHHHHHhcCCEEEEecCCcCCcccccC-----CCCCccEEEecCcCcCCCCcceEEEEcccccccC
Q 017640          222 ASILP---IEEIVHWSHDVGAKVLVDACQSVPHMVVDV-----QGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAM  290 (368)
Q Consensus       222 G~~~~---l~~i~~l~~~~g~~li~D~a~~~~~~~~~~-----~~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l  290 (368)
                      |.+.|   +++|.++|++||+++++|+++..+......     .....+..+.+.+|..+..+.|++....+.+...
T Consensus       143 ~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  219 (343)
T d1m6sa_         143 GRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERA  219 (343)
T ss_dssp             SBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEECHHHHHHH
T ss_pred             ceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccchhhhccccccccccccccccccccccccccHHHHhhh
Confidence            88877   567778889999999999998843321111     0113455666666644444457777776665443

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.54  E-value=1.4e-12  Score=121.08  Aligned_cols=254  Identities=11%  Similarity=0.108  Sum_probs=157.8

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..      ..|..+|.+.+++++.+........ ..+      ......+.+.+.++.+.+   .+.|+.+++
T Consensus        37 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~---~v~~~~sgs  106 (404)
T d1z7da1          37 NDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSR-AFF------SVPLGICERYLTNLLGYD---KVLMMNTGA  106 (404)
T ss_dssp             TCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCT-TSE------EHHHHHHHHHHHHHHTCS---EEEEESSHH
T ss_pred             CCCEEEEccccHHHHhhhcCcHHHHHHHHHHHHhCCCccc-ccc------hHHHHHHHHhhhhccccc---eeeeecccc
Confidence            445678753      3567799999999998876432211 111      122345666677777653   789999999


Q ss_pred             HHHHHHHHHcc-----CCC-CCCCCEEEEcCCCCcccHHHHHHHHHHcCC---------EEEEEeCCCCCCCCHHHHHHh
Q 017640          140 EAINLVAYSWG-----LSN-LKSGDEVILTVAEHHSAIVPWQLVAQKTGA---------NLKFLNLNDDESPDLDKLKEM  204 (368)
Q Consensus       140 ~a~~~~~~~~~-----~~~-~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~---------~v~~v~~~~~~~~d~~~l~~~  204 (368)
                      +++..+++..+     ... ......++.....|++..............         .+..+|.+     +.+.++..
T Consensus       107 ~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~  181 (404)
T d1z7da1         107 EANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYD-----DLEALEEE  181 (404)
T ss_dssp             HHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTT-----CHHHHHHH
T ss_pred             chHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCCCccccccccc-----hHHHHHHH
Confidence            99999887642     101 122346777777777654332222111111         11222222     67777777


Q ss_pred             ccc-CceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEEecCcCcCCC
Q 017640          205 LSR-KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGP  274 (368)
Q Consensus       205 l~~-~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~g~  274 (368)
                      +.+ ++.+|+++..+...|.+.|    +++|.++|++||+++|+||+++ +|..    ..+.....+|+++.+  |.+|.
T Consensus       182 ~~~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~~e~~gv~PDivt~g--K~l~g  259 (404)
T d1z7da1         182 LKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILLG--KALSG  259 (404)
T ss_dssp             HTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGT
T ss_pred             hcCCCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccccccccCCCCCEEEEc--ccccC
Confidence            755 6789999999999998887    9999999999999999999996 4322    122223468999776  96543


Q ss_pred             --CcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Q 017640          275 --TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKW  352 (368)
Q Consensus       275 --~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l  352 (368)
                        ..+|.+++++++.+.+++...+.++                     +.+..+.++..+.|+.+.+..   +.++..++
T Consensus       260 G~~p~~~v~~~~~i~~~~~~~~~~~T~---------------------~gnpl~~aaa~a~L~~~~~~~---~~~~~~~~  315 (404)
T d1z7da1         260 GHYPISAVLANDDIMLVIKPGEHGSTY---------------------GGNPLAASICVEALNVLINEK---LCENAEKL  315 (404)
T ss_dssp             TSSCCEEEEECHHHHTTCCTTCCCCTT---------------------TTCHHHHHHHHHHHHHHHHTT---HHHHHHHH
T ss_pred             CCCCcccccchHHHHccCCCCCcCcCC---------------------CCCcchhhhhhhhhhhhhcch---hhhhhccc
Confidence              2389999999998888766543322                     457777788888888877743   33444444


Q ss_pred             HHHHHHHH
Q 017640          353 IICSIIVI  360 (368)
Q Consensus       353 ~~~l~~~l  360 (368)
                      .+++.+.+
T Consensus       316 ~~~~~~~l  323 (404)
T d1z7da1         316 GGPFLENL  323 (404)
T ss_dssp             HHHHHHHH
T ss_pred             hhHHHHHH
Confidence            44444443

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.54  E-value=1.1e-13  Score=123.43  Aligned_cols=249  Identities=12%  Similarity=0.064  Sum_probs=146.8

Q ss_pred             CCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCC
Q 017640           78 QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSG  157 (368)
Q Consensus        78 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~g  157 (368)
                      .++|.|++++++....         +..+++..+..+++|+.+++++|++++ +|+||+|+|+|+..++.++    ..++
T Consensus        11 g~~P~v~eAl~~~~~~---------~~~~y~~~~~~~~lr~~ia~~~g~~~~-~v~~tsggtean~~a~~~~----~~~~   76 (340)
T d1svva_          11 GMHPKILDLMARDNMT---------QHAGYGQDSHCAKAARLIGELLERPDA-DVHFISGGTQTNLIACSLA----LRPW   76 (340)
T ss_dssp             CCCHHHHHHHHHHTTC---------CCCSTTCSHHHHHHHHHHHHHHTCTTS-EEEEESCHHHHHHHHHHHH----CCTT
T ss_pred             CCCHHHHHHHHHHhhc---------CCCCCCCCHHHHHHHHHHHHHhCCCcc-eEEEcCCHHHHHHHHHHHH----hhhc
Confidence            4578899998875321         111223356677899999999999875 9999999999999999988    8899


Q ss_pred             CEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhccc------CceEEEEcccccccccccC---HH
Q 017640          158 DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR------KTKLVVIHHISNMLASILP---IE  228 (368)
Q Consensus       158 d~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~~n~tG~~~~---l~  228 (368)
                      +.+++....|.+........  ..+.....+.... ...+.+....+...      .+..++++...|..|.+.+   +.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (340)
T d1svva_          77 EAVIATQLGHISTHETGAIE--ATGHKVVTAPCPD-GKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELE  153 (340)
T ss_dssp             EEEEEETTSHHHHSSTTHHH--HTTCCEEEECCTT-SCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHH
T ss_pred             cccccccccceeeeeccccc--ccceeeeeccccc-ccccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhh
Confidence            99999888777654322222  2233333333332 22233333333221      2234444444445555555   56


Q ss_pred             HHHHHHHhcCCEEEEecCCcCCcccccCCC-------CCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCccee
Q 017640          229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQG-------LDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMIS  301 (368)
Q Consensus       229 ~i~~l~~~~g~~li~D~a~~~~~~~~~~~~-------~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~  301 (368)
                      .+...|+++|.++++|+++..+....+...       ...+....+..|..+..+.++............+...      
T Consensus       154 ~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  227 (340)
T d1svva_         154 DISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHLIK------  227 (340)
T ss_dssp             HHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSGGGCTTHHHHHH------
T ss_pred             hhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCccccccccccccccchhhhhhhhhhcc------
Confidence            677889999999999999875443322211       1245566666665555544555444433322221110      


Q ss_pred             ecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017640          302 DVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNT  366 (368)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~  366 (368)
                                     ...++.+.. ..+..+++..+...+.....++...++.++...+.+. |+
T Consensus       228 ---------------~~~~~~~~~-~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~  275 (340)
T d1svva_         228 ---------------QRGALMAKG-WLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEAC-GI  275 (340)
T ss_dssp             ---------------HTTCCCTTT-HHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             ---------------cccCccchh-hHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhcC-CC
Confidence                           011122222 2223334444444456677778888888888888765 43

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=2.9e-15  Score=142.41  Aligned_cols=228  Identities=14%  Similarity=0.078  Sum_probs=145.5

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCCCCCCCCE---------EEEcCCCCcccHHHHHHHHHH
Q 017640          110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDE---------VILTVAEHHSAIVPWQLVAQK  180 (368)
Q Consensus       110 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~~~~~gd~---------vl~~~~~~~s~~~~~~~~~~~  180 (368)
                      .+...++++++++++|.+   .+++++++|+|+..++.++    +++|+.         +..... |+.   ........
T Consensus        73 ~~~~~~le~~~a~l~G~~---~~~~~~sGt~A~~~a~~~~----~~~g~~~~~~~~~~~i~~~~~-~~~---~~~~~~~~  141 (467)
T d2v1pa1          73 SRSYYALAESVKNIFGYQ---YTIPTHQGRGAEQIYIPVL----IKKREQEKGLDRSKMVAFSNY-FFD---TTQGHSQI  141 (467)
T ss_dssp             CHHHHHHHHHHHHHTCCS---EEEEECSSTTTHHHHHHHH----HHHHHHHHCCCTTTCEEEESS-CCH---HHHHHHHH
T ss_pred             CchHHHHHHHHHHHHCCC---EEEECCCCHHHHHHHHHHH----hhccceEecCCCCcEEEEecc-ccc---ccHHHHHH
Confidence            345568999999999986   6789999999999999987    454443         333333 322   23334456


Q ss_pred             cCCEEEEEeCCC----------CCCCCHHHHHHhccc----CceEEEEcccccccc-cccC---HHHHHHHHHhcCCEEE
Q 017640          181 TGANLKFLNLND----------DESPDLDKLKEMLSR----KTKLVVIHHISNMLA-SILP---IEEIVHWSHDVGAKVL  242 (368)
Q Consensus       181 ~g~~v~~v~~~~----------~~~~d~~~l~~~l~~----~~~~v~~~~~~n~tG-~~~~---l~~i~~l~~~~g~~li  242 (368)
                      .|.+++.++.+.          .+.+|+++|++.+.+    .+++++++..+|..| .++|   +++|.++|++||++++
T Consensus       142 ~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~  221 (467)
T d2v1pa1         142 NGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVV  221 (467)
T ss_dssp             TTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEE
T ss_pred             cCCeeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEE
Confidence            699999888763          357899999998864    457888888887765 4444   7899999999999999


Q ss_pred             EecCCcCCcccc------cCC-----------CCCccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCcceeeccc
Q 017640          243 VDACQSVPHMVV------DVQ-----------GLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFL  305 (368)
Q Consensus       243 ~D~a~~~~~~~~------~~~-----------~~~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~  305 (368)
                      +|+++.++....      ...           ....|.+++|.+|.++.++.|++..+++.+..........+...    
T Consensus       222 ~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~gg~i~~~~~~~~~~~~~~~~~~~~~----  297 (467)
T d2v1pa1         222 MDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQ----  297 (467)
T ss_dssp             EECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSCEEEEECSGGGHHHHHHHHHHHHHT----
T ss_pred             EechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCCceeEEecchhhhhHHHhhccccccc----
Confidence            999987543200      000           12479999999997766656888888765533221100000000    


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          306 DHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       306 ~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                              ......+......+.++...++   ........++..++.+++.++|.+.
T Consensus       298 --------~~~~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~  344 (467)
T d2v1pa1         298 --------EGFPTYGGLEGGAMERLAVGLY---DGMNLDWLAYRIAQVQYLVDGLEEI  344 (467)
T ss_dssp             --------TSSCCCCCCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             --------ccCcchhhhHHHHHHHHHHHhH---HhhhHHHHHHHHHHHHHHHHHHHhc
Confidence                    0001112233333333333332   2223455566778888898888765

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=99.51  E-value=2.5e-12  Score=120.57  Aligned_cols=290  Identities=14%  Similarity=0.041  Sum_probs=194.4

Q ss_pred             CCeEEeccCCCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHH
Q 017640           66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV  145 (368)
Q Consensus        66 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~  145 (368)
                      ..++.++.. +.+.+|.+.+.+.+++..+.  |+. ....+++..+.+-+++..+++++|.+-. +.-.-.|+|.....+
T Consensus        65 ~~~~~lG~~-~~hy~P~v~~~~~~~~TaYT--PYQ-PaEiSQG~LQalfEfQtmi~eLTGMdva-NaS~yDGatA~aeA~  139 (471)
T d1wyub1          65 TTFYPLGSC-TMKYNPKLHEEAARLFADLH--PYQ-DPRTAQGALRLMWELGEYLKALTGMDAI-TLEPAAGAHGELTGI  139 (471)
T ss_dssp             TSCCCBTTT-CCCCCCHHHHHHHHTTSSCC--TTS-CGGGCHHHHHHHHHHHHHHHHHHTCSEE-ECCCSSHHHHHHHHH
T ss_pred             ccccCCccc-cCccCcchhhhHHHHHhccC--CCC-CHHHHHHHHHHHHHHHHHHHHHhCCCcc-ccccchHHHHHHHHH
Confidence            344455443 33566777777765443332  321 1245788899999999999999999732 223345666554444


Q ss_pred             HHHcc---CCCCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEEEeCCCCCCCCHHHHHHhcccCceEEEEcccccccc
Q 017640          146 AYSWG---LSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLA  222 (368)
Q Consensus       146 ~~~~~---~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG  222 (368)
                      +.+.+   .........+.+..+.++.....   .....+..++.++.+..+..|.+.++.....++.++++.++++..+
T Consensus       140 ~ma~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~v~~p~~~g~  216 (471)
T d1wyub1         140 LIIRAYHEDRGEGRTRRVVLVPDSAHGSNPA---TASMAGYQVREIPSGPEGEVDLEALKRELGPHVAALMLTNPNTLGL  216 (471)
T ss_dssp             HHHHHHHHHTTCTTTCCEEEEETTSCTHHHH---HHHHTTCEEEEECBCTTSSBCHHHHHHHCSTTEEEEEECSSCTTSC
T ss_pred             HHHHHHhhhcccccccccccCCcccccceee---eeecccceeecccccccccccchhhhhhhhccccceeeccCCCccc
Confidence            44431   11112223455555556554433   3345578888999888888899999999988999999999988765


Q ss_pred             cccCHHHHHHHHHhcCCEEEEecCCcCCcc-cccCCCCCccEEEecCcCcC------CCCcceEEEEcccccccCCCccc
Q 017640          223 SILPIEEIVHWSHDVGAKVLVDACQSVPHM-VVDVQGLDADFLVASSHKMC------GPTGIGFLFGKSDLLSAMPPFLG  295 (368)
Q Consensus       223 ~~~~l~~i~~l~~~~g~~li~D~a~~~~~~-~~~~~~~~~d~~~~s~~K~~------g~~G~G~l~~~~~li~~l~~~~~  295 (368)
                      .....+++.++++++|..+++|.+...... .......+.|.++.+.++.|      |++|+|++.+++++++.+.-...
T Consensus       217 ~e~~~~~~~~~~h~~g~~~~~~~~~~~~~~~l~~p~~~g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~~~R~~PGRiV  296 (471)
T d1wyub1         217 FERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLV  296 (471)
T ss_dssp             CCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEE
T ss_pred             ccchhhhhHHHHHhccccccccccchhhhhhccccCcccccccccccccccccccccccccccceeehhhhhccCCCcee
Confidence            555699999999999999999887553222 12233457888888888844      45569999999999999886665


Q ss_pred             CCcceeecccCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017640          296 GGEMISDVFLDHSTFADPP-SRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQERHNTT  367 (368)
Q Consensus       296 g~~~~~~~~~~~~~~~~~~-~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~g~t  367 (368)
                      +.+.........   .+.+ +|....|-+....+++...+.++-..|++.+.+++.+.++|+.++|++ +|++
T Consensus       297 ~~~~~~~~~~~~---REqhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~-~G~~  365 (471)
T d1wyub1         297 ERGEEGFYLDFD---RPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKE-KGYR  365 (471)
T ss_dssp             EECSSCEEEECC---CTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCB
T ss_pred             cCCCccccccCC---CcccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhh-cCce
Confidence            443322111111   1222 333345566666666667788888889999999999999999999965 6765

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.50  E-value=3.4e-14  Score=134.83  Aligned_cols=167  Identities=17%  Similarity=0.115  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHHHcCCCCCCcEEEeCCHHHHHHHHHHHccCC---CCCCCCEEEEcCCCCcccHHHHHHHHHHcCCEEEE
Q 017640          111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLS---NLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKF  187 (368)
Q Consensus       111 ~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a~~~~~~~~~~~---~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~  187 (368)
                      +.+.++++.+++++|.+   .+++++|+|+|+..++.++...   ....+..++.... |+..   ........|..++.
T Consensus        75 ~~~~~le~~~a~l~g~~---~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~-h~~t---~~~~~~~~g~~~~~  147 (465)
T d1ax4a_          75 RNYYDLKDKAKELFNYD---YIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNF-HFDT---TAAHVELNGCKAIN  147 (465)
T ss_dssp             HHHHHHHHHHHHHHCCC---EEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESS-CCHH---HHHHHHHTTCEEEE
T ss_pred             hHHHHHHHHHHHHHCCC---EEEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccc-hhhh---hHHHHHHcCCeeec
Confidence            45568999999999985   8899999999999999987210   1122223444433 3332   33334456888776


Q ss_pred             EeCC----------CCCCCCHHHHHHhccc----CceEEEEcccccccccc-cC---HHHHHHHHHhcCCEEEEecCCcC
Q 017640          188 LNLN----------DDESPDLDKLKEMLSR----KTKLVVIHHISNMLASI-LP---IEEIVHWSHDVGAKVLVDACQSV  249 (368)
Q Consensus       188 v~~~----------~~~~~d~~~l~~~l~~----~~~~v~~~~~~n~tG~~-~~---l~~i~~l~~~~g~~li~D~a~~~  249 (368)
                      +...          ..+.+|+++|+++|++    .+.+++++..+|..|.. +|   +++|.++|++||+++|+|++|..
T Consensus       148 ~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~  227 (465)
T d1ax4a_         148 IVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFC  227 (465)
T ss_dssp             CBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHH
T ss_pred             ccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchh
Confidence            6432          3478899999999864    34667777777766543 44   78999999999999999999874


Q ss_pred             Ccccc------------------cCCCCCccEEEecCcCcCCCCcceEEEEccc
Q 017640          250 PHMVV------------------DVQGLDADFLVASSHKMCGPTGIGFLFGKSD  285 (368)
Q Consensus       250 ~~~~~------------------~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~  285 (368)
                      +....                  ++. ...|.+++|.+|.+++++.|+++.+++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~d~~s~s~~k~~~~~~~g~l~~~~~  280 (465)
T d1ax4a_         228 ENAYFIKARDPKYKNATIKEVIFDMY-KYADALTMSAKKDPLLNIGGLVAIRDN  280 (465)
T ss_dssp             HHHHHHHHHCGGGTTCCHHHHHHHHG-GGCSEEEEETTSTTCCSSCEEEEESSC
T ss_pred             hhhcccccccccccccchhhhccccc-cccceeEeecccCcccccceeEeecch
Confidence            32210                  000 126899999999887777799988775

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=9.7e-12  Score=116.03  Aligned_cols=270  Identities=9%  Similarity=0.016  Sum_probs=168.0

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|||..+      .|+.+|.+.+++.+.+.........+..      .+...++.+++.+....+.+ .+.|+++++
T Consensus        41 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~------~~~~~~l~~~l~~~~~~~~~-~v~f~~sGs  113 (429)
T d1s0aa_          41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGIT------HAPAIELCRKLVAMTPQPLE-CVFLADSGS  113 (429)
T ss_dssp             TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEE------CHHHHHHHHHHHHHSCTTCC-EEEEESSHH
T ss_pred             CCCEEEECcccHHHHhhcCCcHHHHHHHHHHHHhcCCcccCCcc------chHHHHHHHHHHhhhccCcc-eeeeccccc
Confidence            3446777532      4567999999999998875321111111      12334566777777766543 899999999


Q ss_pred             HHHHHHHHHccCC---CCCCCCEEEEcCCCCcccHHHHHHHHHH-------c---CCEEEEEeCCC---CCC---CCHHH
Q 017640          140 EAINLVAYSWGLS---NLKSGDEVILTVAEHHSAIVPWQLVAQK-------T---GANLKFLNLND---DES---PDLDK  200 (368)
Q Consensus       140 ~a~~~~~~~~~~~---~~~~gd~vl~~~~~~~s~~~~~~~~~~~-------~---g~~v~~v~~~~---~~~---~d~~~  200 (368)
                      +|++.+++..+..   .-.++.+|+.....||+.......+...       .   .......|...   ...   .+++.
T Consensus       114 eA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (429)
T d1s0aa_         114 VAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVG  193 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHH
T ss_pred             cchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccchhhhhh
Confidence            9999998765211   1133457888888888765332222100       0   01112222211   111   23445


Q ss_pred             HHHhcc---cCceEEEEcccc-cccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcc----cccCCCCCccEEEec
Q 017640          201 LKEMLS---RKTKLVVIHHIS-NMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVAS  267 (368)
Q Consensus       201 l~~~l~---~~~~~v~~~~~~-n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s  267 (368)
                      +++.+.   +++.+|+++... +..|...|    +++|.++|++||+++|+||++. +|..    ..+.....+|+++.+
T Consensus       194 ~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~~~~~v~PDi~~~g  273 (429)
T d1s0aa_         194 FARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLG  273 (429)
T ss_dssp             HHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC
T ss_pred             hhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccccccccccccccccceecccccccc
Confidence            544443   467888888775 55555443    8999999999999999999987 3332    112233469999988


Q ss_pred             CcCcCCC--CcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 017640          268 SHKMCGP--TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI  345 (368)
Q Consensus       268 ~~K~~g~--~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~~i  345 (368)
                        |.++.  ..+|.+++++++.+.+.+...+..                ......+.+..+.+++.+.|+.+++   +.+
T Consensus       274 --K~l~gG~~p~~av~~~~~i~~~~~~~~~~~~----------------~~~~T~~gnp~~~aaa~a~L~~i~~---~~~  332 (429)
T d1s0aa_         274 --KALTGGTMTLSATLTTREVAETISNGEAGCF----------------MHGPTFMGNPLACAAANASLAILES---GDW  332 (429)
T ss_dssp             --GGGGTSSSCCEEEEECHHHHHHHHTSTTSSC----------------SCCCTTTTCHHHHHHHHHHHHHHHT---CHH
T ss_pred             --cccccccccccchhhHHHHHhccCCCCCcce----------------eecCCCCCCcccchhhhcccccccc---ccc
Confidence              85533  348999999988765433211100                0011225677788888888888876   456


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 017640          346 HAYEVKWIICSIIVIQER  363 (368)
Q Consensus       346 ~~~~~~l~~~l~~~l~~~  363 (368)
                      .++..++.+++.+.|.+.
T Consensus       333 ~~~~~~~g~~l~~~L~~l  350 (429)
T d1s0aa_         333 QQQVADIEVQLREQLAPA  350 (429)
T ss_dssp             HHHHHHHHHHHHHHHGGG
T ss_pred             cchhhHHHHHHHHHHHHh
Confidence            788888888888888765

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=99.38  E-value=1e-11  Score=116.23  Aligned_cols=260  Identities=11%  Similarity=0.010  Sum_probs=159.1

Q ss_pred             CCeEEeccCC------CCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|+|..+      .|+.+|.+.+++.+.++....- ..+  ..    .+...++.++|.+.....- +.|.|+++++
T Consensus        39 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~-~~~--~~----~~~~~~la~~L~~~~~~~~-~~v~f~~sGs  110 (431)
T d1zoda1          39 DGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHL-FSE--ML----SRPVVDLATRLANITPPGL-DRALLLSTGA  110 (431)
T ss_dssp             TCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCC-CTT--CC----CHHHHHHHHHHHHHSCTTC-CEEEEESCHH
T ss_pred             CCCEEEEcccCHHhhhhcCCCHHHHHHHHHHHhhcccc-ccc--cc----cHHHHHHHHHHHHhCCccc-ceeeeccccc
Confidence            3456777642      5678999999999999875311 111  11    1223367777888775433 3899999999


Q ss_pred             HHHHHHHHHccCCCCCCCCEEEEcCCCCcccHHHHHHHHHHcC--------CEEEEEeCCCCC---------CCCHHH--
Q 017640          140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTG--------ANLKFLNLNDDE---------SPDLDK--  200 (368)
Q Consensus       140 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g--------~~v~~v~~~~~~---------~~d~~~--  200 (368)
                      +|++.+++..+.  ...++.|+.....||+............+        .....++.....         ..+.+.  
T Consensus       111 eA~e~Alk~Ar~--~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (431)
T d1zoda1         111 ESNEAAIRMAKL--VTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELD  188 (431)
T ss_dssp             HHHHHHHHHHHH--HHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHH
T ss_pred             chHHHHHHHHHH--hcCCcceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccccccchhhhhhHH
Confidence            999999997632  35567888889999986644332211000        112223222110         011222  


Q ss_pred             -HHHhc----ccCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEEecCCc-CCcccc----cCCCCCccEEEe
Q 017640          201 -LKEML----SRKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMVV----DVQGLDADFLVA  266 (368)
Q Consensus       201 -l~~~l----~~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~D~a~~-~~~~~~----~~~~~~~d~~~~  266 (368)
                       ++..+    ..++.+|+++......|.+.|    +++|.++|++||+++|+||++. +|..-.    +.....+|+++.
T Consensus       189 ~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~~~~gv~PDi~~~  268 (431)
T d1zoda1         189 YAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTL  268 (431)
T ss_dssp             HHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEE
T ss_pred             HHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccccccccccccccccCCCCcchhcc
Confidence             22222    246789999999888888776    9999999999999999999998 343311    112346999998


Q ss_pred             cCcCcCC-CCcceEEEEcccccccCCC--cccCCcceeecccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCHH
Q 017640          267 SSHKMCG-PTGIGFLFGKSDLLSAMPP--FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQ  343 (368)
Q Consensus       267 s~~K~~g-~~G~G~l~~~~~li~~l~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~al~~~~~~g~~  343 (368)
                      +  |.+| +.-.+.++++++..+....  ...+                     ...+.+..+.+++.+.++.+++..  
T Consensus       269 g--K~l~gG~p~~av~~~~~~~~~~~~~~~~~~---------------------~T~~g~pl~~aaa~a~l~~i~~~~--  323 (431)
T d1zoda1         269 S--KTLGAGLPLAAIVTSAAIEERAHELGYLFY---------------------TTHVSDPLPAAVGLRVLDVVQRDG--  323 (431)
T ss_dssp             C--HHHHTTSSCEEEEECHHHHHHHHHTTCCCC---------------------CTTTTCHHHHHHHHHHHHHHHHTT--
T ss_pred             c--cccccccccceeeeeecchhhhhccccccc---------------------CCCCCCcchHHHHHHHHHHhhhhh--
Confidence            8  8432 2235666666665443221  1111                     112566677777888888877743  


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 017640          344 KIHAYEVKWIICSIIVIQ  361 (368)
Q Consensus       344 ~i~~~~~~l~~~l~~~l~  361 (368)
                       +.++..++.+++.+.+.
T Consensus       324 -~~~~~~~~g~~l~~~l~  340 (431)
T d1zoda1         324 -LVARANVMGDRLRRGLL  340 (431)
T ss_dssp             -HHHHHHHHHHHHHHHHH
T ss_pred             -hhHHHHHHHHHHhhhhh
Confidence             44555555555555443

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.32  E-value=1.1e-11  Score=116.67  Aligned_cols=265  Identities=11%  Similarity=0.046  Sum_probs=151.5

Q ss_pred             CCeEEeccC------CCCCCcHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCHH
Q 017640           66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT  139 (368)
Q Consensus        66 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t  139 (368)
                      ++.-|||..      ..|+.+|.|.+++.+.+.............  .......+++.+.+.+..+.+. +.++|+++++
T Consensus        51 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~--~~~~~~a~~lae~l~~~~~~~~-~~v~f~~sGs  127 (461)
T d1ohwa_          51 DGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGI--LPPENFVEKLRESLLSVAPKGM-SQLITMACGS  127 (461)
T ss_dssp             TSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTT--SCBTTHHHHHHHTGGGGCCTTC-CEEEEESSHH
T ss_pred             CCCEEEEcccCHHHHhhcCCcHHHHHHHHHHHhhhhhcccccccc--cchHHHHHHHHHHHHhhhccCc-ceeeeecchh
Confidence            455678753      246788999999987665432111000000  0011223345555555555543 3899999999


Q ss_pred             HHHHHHHHHccC------------------------CCCCCCCEEEEcCCCCcccHHHHHHHHH-----HcC---CEEEE
Q 017640          140 EAINLVAYSWGL------------------------SNLKSGDEVILTVAEHHSAIVPWQLVAQ-----KTG---ANLKF  187 (368)
Q Consensus       140 ~a~~~~~~~~~~------------------------~~~~~gd~vl~~~~~~~s~~~~~~~~~~-----~~g---~~v~~  187 (368)
                      +|++.+++....                        ....++..|+....+||+.......+..     ...   .....
T Consensus       128 eAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~~  207 (461)
T d1ohwa_         128 CSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPI  207 (461)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCCCCE
T ss_pred             hhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCcccccccccccCCcc
Confidence            999999876421                        1123455799999999986543332210     000   01111


Q ss_pred             EeCCCC-C-------------CCCHHHHHHhcc------cCceEEEEcccccccccccC----HHHHHHHHHhcCCEEEE
Q 017640          188 LNLNDD-E-------------SPDLDKLKEMLS------RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLV  243 (368)
Q Consensus       188 v~~~~~-~-------------~~d~~~l~~~l~------~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~g~~li~  243 (368)
                      .+.... .             ..+.+++++.+.      .++.+|+++..+...|.+.|    +++|.++|++||+++|+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~  287 (461)
T d1ohwa_         208 APFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLV  287 (461)
T ss_dssp             ECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             cccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcceec
Confidence            111100 0             012344555442      46789999999998888766    89999999999999999


Q ss_pred             ecCCc-CCcc-c-ccCC--CC--CccEEEecCcCcCCCCcceEEEEcccccccCCCcccCCcceeecccCCCCCCCCCCC
Q 017640          244 DACQS-VPHM-V-VDVQ--GL--DADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSR  316 (368)
Q Consensus       244 D~a~~-~~~~-~-~~~~--~~--~~d~~~~s~~K~~g~~G~G~l~~~~~li~~l~~~~~g~~~~~~~~~~~~~~~~~~~~  316 (368)
                      ||++. +|.. . +..+  ..  .+|+++.+  |.++.   |++.....+ ....+...+                    
T Consensus       288 DEV~tG~gRtG~~~~~e~~gi~~~PDiv~~g--K~l~~---g~~~~~~~~-~~~~~~~~~--------------------  341 (461)
T d1ohwa_         288 DEVQTGGGSTGKFWAHEHWGLDDPADVMTFS--KKMMT---GGFFHKEEF-RPNAPYRIF--------------------  341 (461)
T ss_dssp             ECTTTCSSTTSSSSGGGGGCCSSCCSEEEEC--GGGSS---EEEEECGGG-SCSSTTSSC--------------------
T ss_pred             cccccccccccccccccccccccCchhhhhh--hcccc---ccccccccc-ccccccccc--------------------
Confidence            99986 4322 1 1111  11  48999777  85543   333333322 222222111                    


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Q 017640          317 FEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEVKWIICSIIVIQER  363 (368)
Q Consensus       317 ~~~gt~~~~~~~a~~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  363 (368)
                       .....+..+.+++.++++.+++.+   +.+++.++.+++.+.|.++
T Consensus       342 -~T~~g~p~~~aaa~a~l~~i~~~~---l~~~~~~~g~~l~~~l~~l  384 (461)
T d1ohwa_         342 -NTWLGDPSKNLLLAEVINIIKRED---LLSNAAHAGKVLLTGLLDL  384 (461)
T ss_dssp             -CSCSSCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHH
T ss_pred             -cccccccccchhhcccchhhhhhh---HHHHHHHHHHHHHHHHHHH
Confidence             122456677778888888888743   4555666666666665543