Citrus Sinensis ID: 017641

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
Protein Sequence
MASLQTSWLSSVSTIKNKNDSSAKQKPKLSSLKLSFFLNATSNNDEASEQPISENSPEPEASLDPVKLAFEKAKAYRKLKESNSDSKYEQNPDKDVARAAVEKAKEYKKNKDTVSFQNGTNSGFKGEGRGNLPKEVGGKKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVGDTSKFGESTVLRPGPKQEENLEFYKPKVSTWGVFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQVYVK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHccccEEEEcccccccEEccccccccccccccccccEEccEEEEEccHHHccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccEcEccccccccccHHHcccccEEccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MASLQTSWLSSVSTIknkndssakqkpklsslKLSFFLnatsnndeaseqpisenspepeasldpVKLAFEKAKAYRKLKesnsdskyeqnpdKDVARAAVEKAKEykknkdtvsfqngtnsgfkgegrgnlpkevggkkeglkISSIDfmglnfadkkegkglpaglvpvtdpfaegdtpeveiivgdtskfgestvlrpgpkqeenlefykpkvstwgvfprpgnisktfgggrtirpgdvLETAEARAAKEERTRQLLAAYKKSvglnvdpklKSECEKALKdgdslmdsgklkeaLPFYEKVMNKMVFKSELHGLAALQWSIcqdslhrpKEARIMYEKLQSHPNALVSKRARQFMFSFQVYVK
Flexible Loop (DISEMBL)
maslqtswlssvstiknkndssakqkpklssLKLSFFLNATSnndeaseqpisenspepeasldPVKLAFEKAKAYRklkesnsdskyeqnpdkDVARAAVEKAkeykknkdtvsfqngtnsgfkgegrgnlpkevggkkeglKISSIDFMGLNFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVgdtskfgestvlrpgpkqeenlefykpkvstwgvfprpgnisktfgggrtirpgDVLETAEARAAKEERTRQLLAAykksvglnvdpklKSECEKAlkdgdslmdsgkLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQVYVK
Low Complexity Region (SEG)
MASLQTSWLSSVSTIKNKNDssakqkpklsslklsfflNATSNNDEASEQPISENSPEPEASLDPVKLAFEKAKAYRKLKESNSDSKYEQNPDKDVARAAVEKAKEYKKNKDTVSFQNGTNSGFKGEGRGNLPKEVGGKKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVGDTSKFGESTVLRPGPKQEENLEFYKPKVSTWGVFPRPGNISKTFGGGRTIRPGDVLetaearaakeertrQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQVYVK
Disordered region (IsUnstruct)
************************************************************************************************************************************************ISSIDFMGLNFAD*****GLPAGLVPVTDPFAEGDTPEVEIIVGD*******************LEFYKPKVSTWGVFPRPGNISKTFGGGRTI***********************AAY*********************************EALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ***NALVSKRARQFMFSFQVY**
Disordered Region (DISOPRED)
*******************************************************************LAFEK************************************************************************ISSIDFMG***************************TPEVEIIVGDT***********************PKVSTWGVFPRPGNISKTFGGGR*I*****************************************CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ***********RQFMFSFQVYV*
Disordered Region (DISEMBL)
MASLQTSWLSSVS**************KLSSLKLSFFLNATSN*******************LDPVKLAFEKAKAY*******************VARAAVEKAKEYKKNKDTVSFQNGTNSGFKGEGRGNLPKEVGGKKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVGDTSKFGESTVLRPGPKQEENLEFYKPKVSTWGVFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQVYVK
Disordered Region (DISPRO)
*************T**NKNDSSAKQKPKLSSLKLSFFLNA*********************SLDPVKLAFEKAKAYRKLKE****SK******KDVARAAVEKAKEYKKNKDTVSFQNGTNSGFKGEGRGNLPKEVGGKKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVGDTSKFG**************LEFYKPKVSTWGVFPRPGNISKTFGGGRTIRPG*VLETAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQVYV*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASLQTSWLSSVSTIKNKNDSSAKQKPKLSSLKLSFFLNATSNNDEASEQPISENSPEPEASLDPVKLAFEKAKAYRKLKESNSDSKYEQNPDKDVARAAVEKAKEYKKNKDTVSFQNGTNSGFKGEGRGNLPKEVGGKKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVGDTSKFGESTVLRPGPKQEENLEFYKPKVSTWGVFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQVYVK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	368
255544061	452	conserved hypothetical protein [Ricinus	0.907	0.738	0.631	1e-120
356538737	442	PREDICTED: uncharacterized protein LOC10	0.978	0.814	0.558	1e-108
296081287	454	unnamed protein product [Vitis vinifera]	0.948	0.768	0.549	1e-105
225449870	457	PREDICTED: uncharacterized protein LOC10	0.918	0.739	0.53	1e-104
449452134	475	PREDICTED: uncharacterized protein LOC10	0.842	0.652	0.592	1e-104
224053314	315	predicted protein [Populus trichocarpa]	0.614	0.717	0.778	1e-101
388502572	478	unknown [Lotus japonicus]	0.970	0.746	0.542	1e-101
33945880	1217	hypothetical protein [Lotus japonicus]	0.975	0.294	0.541	1e-101
164605522	484	CM0216.540.nc [Lotus japonicus]	0.975	0.741	0.541	1e-100
297823763	458	binding protein [Arabidopsis lyrata subs	0.951	0.764	0.561	6e-99

>gi|255544061|ref|XP_002513093.1| conserved hypothetical protein [Ricinus communis] gi|223548104|gb|EEF49596.1| conserved hypothetical protein [Ricinus communis]

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/369 (63%), Positives = 276/369 (74%), Gaps = 35/369 (9%)

Query: 25  QKPKLSSL--------KLSFFLNATSNNDEASEQPISENSPEPEASLDPVKLAFEKAKAY 76
           QKP  +SL        K+SF LN +  N E+S+ P  E++PEP+   DPVKLAFEKAKAY
Sbjct: 15  QKPTTTSLLPSKTSFFKVSFSLNPS--NAESSQNP-PESTPEPDP--DPVKLAFEKAKAY 69

Query: 77  RKLKESNSDSKYEQNP----------DKDV---ARAAVEKAKEYKKNKDTVSFQNGT--- 120
           +K  E    +K EQNP          DK+V    + A+EKA+EYKKN+  V  +  T   
Sbjct: 70  KKTIEETKKAKLEQNPVEGSAGNNGKDKEVPVSVKVAMEKAREYKKNQ-VVGTKGATESE 128

Query: 121 -NSGFKGEGRGNLPK----EVGGKKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTDPF 175
            +SG K    GNL +    +   KK+ L ISSIDFMGLNFADKK G+GLPAGL PV DPF
Sbjct: 129 MSSGLKARSEGNLQRGSIEKTATKKDKLSISSIDFMGLNFADKKTGRGLPAGLAPVIDPF 188

Query: 176 AEGDTPEVEIIVGDTSKFGESTVLRPGPKQEENLEFYKPKVSTWGVFPRPGNISKTFGGG 235
            EG+ PEVEIIVGDT  F + T   P P Q+E+ + YKPKVSTWGVFPRPGNISKTFGGG
Sbjct: 189 PEGNLPEVEIIVGDTDNFDDPTTSMPKPSQDESSDVYKPKVSTWGVFPRPGNISKTFGGG 248

Query: 236 RTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGK 295
           RTIRPGDVLETAE RAAK++RT+QLLAAY+K +GL++DPK+K ECEKALKDGDSLMDSGK
Sbjct: 249 RTIRPGDVLETAEERAAKDDRTKQLLAAYRKKMGLSIDPKIKFECEKALKDGDSLMDSGK 308

Query: 296 LKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKR 355
           LKEA+P+Y+KV++K+ F+SELHGLAALQWSICQDSL R  EA+ MYEKLQSHPNA VSK+
Sbjct: 309 LKEAVPYYQKVIDKLPFQSELHGLAALQWSICQDSLSRQNEAQAMYEKLQSHPNAKVSKK 368

Query: 356 ARQFMFSFQ 364
           ARQFMFSFQ
Sbjct: 369 ARQFMFSFQ 377

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538737|ref|XP_003537857.1| PREDICTED: uncharacterized protein LOC100784194 [Glycine max]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/374 (55%), Positives = 260/374 (69%), Gaps = 14/374 (3%)

Query: 1   MASLQTSWLSSVSTIKNKNDSSAKQKPKLSSLKLSFFLNATSNNDEASEQPISENSPEPE 60
           MA LQ  W SS+  + +    +A   P  +         A   ++  S +P S ++PEP 
Sbjct: 1   MACLQPPWFSSLRVV-SPAKLAAGPPPSTTYKPAKLLFWAVGPDNAESSEPASPDAPEPA 59

Query: 61  ASLDPVKLAFEKAKAYRKLKESNSDSKYEQNPDK-------DVARAAVEKAKEYKKNKDT 113
           A +DPV+LAF KA AY+    ++ +S  E+N          D  + A+EKAK+YK+NK  
Sbjct: 60  APVDPVELAFSKANAYKADYNNDENSAEERNVGDETPKDLPDSVKIAIEKAKKYKQNKAV 119

Query: 114 VSFQNGTNSGFKGEGRGNLPKEVGGKKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTD 173
            +    T        R +   +VG K E L +S +DF GL+FADKK  +GLP GLVP+++
Sbjct: 120 AAVTETTQGSLGVSERSSGKNKVGKKGE-LSVSRMDFAGLDFADKKMTRGLPPGLVPISE 178

Query: 174 PFAEGDTPEVEIIVGDTSKFGESTVLRPGPKQ---EENLEFYKPKVSTWGVFPRPGNISK 230
           P+ +GD PEVE+I+GDTSKF ++T   P P+Q   E+  E YKPKVSTWGVFPRPGNISK
Sbjct: 179 PYFDGDLPEVELIIGDTSKFDDATT--PEPEQTNKEDEAELYKPKVSTWGVFPRPGNISK 236

Query: 231 TFGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSL 290
           TFGGGR IRPG+VLET E +A KE RT+QLLAAYKK  GLNVDPKLKSECE+ALKDGD L
Sbjct: 237 TFGGGRVIRPGEVLETKEEKAVKEARTKQLLAAYKKKTGLNVDPKLKSECEEALKDGDLL 296

Query: 291 MDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNA 350
           M+ GKLKEALP+YEKVM+K+ F+SELHGLAALQWSICQDSL R  EAR MYEKL+SHPN 
Sbjct: 297 MNVGKLKEALPYYEKVMDKLTFQSELHGLAALQWSICQDSLSRSNEARGMYEKLKSHPNP 356

Query: 351 LVSKRARQFMFSFQ 364
            VSK+ARQFM+SFQ
Sbjct: 357 KVSKKARQFMYSFQ 370

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081287|emb|CBI17731.3| unnamed protein product [Vitis vinifera]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/386 (54%), Positives = 263/386 (68%), Gaps = 37/386 (9%)

Query: 1   MASLQTSWLSSVSTIKNKNDSSAKQKPKLSSLKLSFFLNATSNNDEASEQPISENSPEP- 59
           ++S + S  +S + I N         P++  LK+SF  + + +N E+S      +   P 
Sbjct: 17  ISSTKPSLFTSTTPILN---------PQIRPLKVSF--SQSQSNAESSPSNSPNSGEGPL 65

Query: 60  ---EASLDPVKLAFEKAKAYRKLKESNSDSKYEQNPDKDV----------------ARAA 100
                S DP KL+F +AK Y+K  +   D     NP                     + A
Sbjct: 66  EVKPGSSDPDKLSFARAKEYKKTTKQEMDG----NPGLGSEGNGNGGGEAQEMPVSVKIA 121

Query: 101 VEKAKEYKKNKDTV--SFQNGTNSGFKGEGRGNLPKEVGGKKEGLKISSIDFMGLNFADK 158
           +EKAKEY KNK  V  S     + G  G     + ++   KKE L ISSIDF+GLNF+DK
Sbjct: 122 LEKAKEYTKNKGVVGDSRSEALSGGNAGNLGNGIVEKGDDKKEQLAISSIDFVGLNFSDK 181

Query: 159 KEGKGLPAGLVPVTDPFAEGDTPEVEIIVGDTSKFGESTVLRPGPKQEENLEFYKPKVST 218
           K G+GLPAGLVPV+DPF EGD P VE+IVGDTSKF ++T   P P Q++N + YKPKVST
Sbjct: 182 KTGRGLPAGLVPVSDPFPEGDLPGVELIVGDTSKFEDATSSNPKPTQDDNSDLYKPKVST 241

Query: 219 WGVFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDPKLKS 278
           WGVFPRP NISKTFGGGR IRPG+VLETA+ +AAKE RTRQLLAAYK  +GLN+DPKLKS
Sbjct: 242 WGVFPRPNNISKTFGGGRVIRPGEVLETADDKAAKEARTRQLLAAYKTKIGLNIDPKLKS 301

Query: 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEAR 338
           EC++ALK+GDSLM+ GKLKEALP+YEKVM+K+ F+SELHGLAALQWSIC DSL RP EAR
Sbjct: 302 ECDQALKNGDSLMNIGKLKEALPYYEKVMDKLTFQSELHGLAALQWSICLDSLSRPDEAR 361

Query: 339 IMYEKLQSHPNALVSKRARQFMFSFQ 364
           +MYE+LQ+HPNALVSK+ARQ +F FQ
Sbjct: 362 VMYERLQTHPNALVSKKARQLIFGFQ 387

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449870|ref|XP_002265393.1| PREDICTED: uncharacterized protein LOC100248180 [Vitis vinifera]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/400 (53%), Positives = 261/400 (65%), Gaps = 62/400 (15%)

Query: 1   MASLQTSWLSSVSTIKNKNDSSAKQKPKLSSLKLSFFLNATSNNDEASEQPISENSPEP- 59
           ++S + S  +S + I N         P++  LK+SF  + + +N E+S      +   P 
Sbjct: 17  ISSTKPSLFTSTTPILN---------PQIRPLKVSF--SQSQSNAESSPSNSPNSGEGPL 65

Query: 60  ---EASLDPVKLAFEKAKAYRKLKESNSDSKYEQNPDKDV----------------ARAA 100
                S DP KL+F +AK Y+K  +   D     NP                     + A
Sbjct: 66  EVKPGSSDPDKLSFARAKEYKKTTKQEMDG----NPGLGSEGNGNGGGEAQEMPVSVKIA 121

Query: 101 VEKAKEYKKNKDTVSFQNGTNSGFKGEGRGNLPKEV----------------GGKKEGLK 144
           +EKAKEY KNK           G  G+ R     E+                  KKE L 
Sbjct: 122 LEKAKEYTKNK-----------GVVGDSRSEALSELTGGNAGNLGNGIVEKGDDKKEQLA 170

Query: 145 ISSIDFMGLNFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVGDTSKFGESTVLRPGPK 204
           ISSIDF+GLNF+DKK G+GLPAGLVPV+DPF EGD P VE+IVGDTSKF ++T   P P 
Sbjct: 171 ISSIDFVGLNFSDKKTGRGLPAGLVPVSDPFPEGDLPGVELIVGDTSKFEDATSSNPKPT 230

Query: 205 QEENLEFYKPKVSTWGVFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEERTRQLLAAY 264
           Q++N + YKPKVSTWGVFPRP NISKTFGGGR IRPG+VLETA+ +AAKE RTRQLLAAY
Sbjct: 231 QDDNSDLYKPKVSTWGVFPRPNNISKTFGGGRVIRPGEVLETADDKAAKEARTRQLLAAY 290

Query: 265 KKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQW 324
           K  +GLN+DPKLKSEC++ALK+GDSLM+ GKLKEALP+YEKVM+K+ F+SELHGLAALQW
Sbjct: 291 KTKIGLNIDPKLKSECDQALKNGDSLMNIGKLKEALPYYEKVMDKLTFQSELHGLAALQW 350

Query: 325 SICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQ 364
           SIC DSL RP EAR+MYE+LQ+HPNALVSK+ARQ +F FQ
Sbjct: 351 SICLDSLSRPDEARVMYERLQTHPNALVSKKARQLIFGFQ 390

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452134|ref|XP_004143815.1| PREDICTED: uncharacterized protein LOC101215292 [Cucumis sativus]

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/346 (59%), Positives = 240/346 (69%), Gaps = 36/346 (10%)

Query: 52  ISENSPEPEASLDPVKLAFEKAKAYRKLKESNS--------------------------- 84
           +S+ +P P   LDPVKLAFE+AKAY+KL +S S                           
Sbjct: 61  VSDAAPPP---LDPVKLAFERAKAYKKLSKSGSNLNVELKPGVGSEGNSVQTGKSGVLSF 117

Query: 85  DSKYEQNPDKDVARAAVEKAKEYKKNKDTVSFQN-----GTNSGFKGEGRGNLP-KEVGG 138
           D   EQ   +   R AVE A E K     V+         TN G      GNL  K+ G 
Sbjct: 118 DGADEQRKMQGGVRVAVESANEVKGEAKVVTDGTKGGVINTNEGLNDRDGGNLGNKQKGD 177

Query: 139 KKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVGDTSKFGESTV 198
           KK  L ISSIDF+GL FADKK+ +GLPAGLVP++DPF+  D PEVEIIVGD+SKF ++TV
Sbjct: 178 KKGELSISSIDFIGLGFADKKKSRGLPAGLVPISDPFSVEDLPEVEIIVGDSSKFDDATV 237

Query: 199 LRPGPKQEENLEFYKPKVSTWGVFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEERTR 258
               P QE++ +FYKPKVSTWGVFPRPGNISKTFGGGRTIRPGDVLET E +A KE RT+
Sbjct: 238 SEIKPTQEDDSDFYKPKVSTWGVFPRPGNISKTFGGGRTIRPGDVLETDEEKAVKEARTK 297

Query: 259 QLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG 318
           +L+AAYKK  GL +D KLKSECE AL++GDSLM+ GKLKEALP+YE +M K+ F+SELHG
Sbjct: 298 ELIAAYKKKFGLTIDAKLKSECEMALEEGDSLMNDGKLKEALPYYETIMEKVNFQSELHG 357

Query: 319 LAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQ 364
           LAALQWSICQDSL RP  AR MYEKL+SHPN  VSK+ARQFMFSFQ
Sbjct: 358 LAALQWSICQDSLSRPDVAREMYEKLKSHPNPRVSKKARQFMFSFQ 403

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053314|ref|XP_002297759.1| predicted protein [Populus trichocarpa] gi|222845017|gb|EEE82564.1| predicted protein [Populus trichocarpa]

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/226 (77%), Positives = 201/226 (88%)

Query: 139 KKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVGDTSKFGESTV 198
           K++ L ISSIDF+GL FADKK+G+GLPAGLVP+TDPF+EG+ P+VEIIVGDTSKF + + 
Sbjct: 17  KEQKLSISSIDFVGLEFADKKKGRGLPAGLVPITDPFSEGNLPDVEIIVGDTSKFEDPST 76

Query: 199 LRPGPKQEENLEFYKPKVSTWGVFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEERTR 258
           L   P QE+N + YKPKVSTWGVFPRPGNISKTFGGG+TIRPGD LETAEARAAK+ERT+
Sbjct: 77  LTSKPTQEDNPDLYKPKVSTWGVFPRPGNISKTFGGGKTIRPGDELETAEARAAKDERTK 136

Query: 259 QLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG 318
           QL+AAY+KS+GLNVDP +K ECEKALKDGDSLMDSGKL +ALP+Y+ VM+K+ FKSELHG
Sbjct: 137 QLIAAYRKSIGLNVDPNVKLECEKALKDGDSLMDSGKLNDALPYYQMVMDKLPFKSELHG 196

Query: 319 LAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQ 364
           LAALQWSICQDSL RP EAR MYEKLQSHPN  VSK ARQFMFSFQ
Sbjct: 197 LAALQWSICQDSLSRPNEARAMYEKLQSHPNVKVSKIARQFMFSFQ 242

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502572|gb|AFK39352.1| unknown [Lotus japonicus]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 212/391 (54%), Positives = 259/391 (66%), Gaps = 34/391 (8%)

Query: 1   MASLQTSWLSSVSTIKN------KNDSSAKQKPKLSSLKLSFFLNATSNNDEASEQPISE 54
           MASL++ WL  + + KN       N S     P  S+         +SNN E+SE     
Sbjct: 1   MASLRSPWLRCIVSPKNGAIFPSTNVSVCMCLPS-STTTFRLCCALSSNNAESSEP---- 55

Query: 55  NSPEPEAS-LDPVKLAFEKAKAYRKLK-ESNSDSKYEQNP----------------DKDV 96
            SPE +   +DPVKLAF KAK Y++   +SN  S  EQ+                  KD+
Sbjct: 56  TSPEAQTGPVDPVKLAFNKAKTYKEESGKSNPGSGIEQSDANGENSVNQGDAVDGRQKDL 115

Query: 97  ---ARAAVEKAKEYKKNKDTVSFQNGTNSGFKGEGRGNLPKEVGGKKEGLKISSIDFMGL 153
               + A+EKAK+YK+NK     +  T  G +G     L   VG K+  L +S IDF+GL
Sbjct: 116 PVSLKIAMEKAKKYKQNKGVAIAE--TTQGLQGGRERTLENSVGEKEGKLSVSKIDFVGL 173

Query: 154 NFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVGDTSKFGESTVLRPGPKQEENLEFYK 213
           +F DKK+ +GLP GLVPVTD F++GD  EV  IVGD +KF   T   P   +EE  E YK
Sbjct: 174 DFGDKKKARGLPPGLVPVTDSFSDGDLTEVGFIVGDATKFDAVTDPEPEQTKEEESELYK 233

Query: 214 PKVSTWGVFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVD 273
           P VSTWGVFPRPGNISKTFGGGR IRPG+VLET E +A +E RT+QLLAAYKK  GL++D
Sbjct: 234 PTVSTWGVFPRPGNISKTFGGGRVIRPGEVLETDEEKAMREVRTKQLLAAYKKRTGLDID 293

Query: 274 PKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR 333
           PKLKSECE+ALKDGD LM++GKLKEALP+YEKVM+K+ FKSELHGLAALQWSIC DSL+R
Sbjct: 294 PKLKSECEEALKDGDLLMNAGKLKEALPYYEKVMDKITFKSELHGLAALQWSICLDSLNR 353

Query: 334 PKEARIMYEKLQSHPNALVSKRARQFMFSFQ 364
             EA+ MYEKL+SHPNA VSK+ARQF +SFQ
Sbjct: 354 SNEAQSMYEKLKSHPNAKVSKKARQFSYSFQ 384

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33945880|emb|CAE45591.1| hypothetical protein [Lotus japonicus]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 215/397 (54%), Positives = 265/397 (66%), Gaps = 38/397 (9%)

Query: 1   MASLQTSWLSSVSTIKN------KNDSSAKQKPK-LSSLKLSFFLNATSNNDEASEQPIS 53
           MASL++ WL  + + KN       N S     P   ++ KL   L  +SNN E+SE    
Sbjct: 1   MASLRSPWLRCIVSPKNGAIFPSTNVSVCMCLPSSTTTFKLCCAL--SSNNAESSEP--- 55

Query: 54  ENSPEPEAS-LDPVKLAFEKAKAYRKLK-ESNSDSKYEQNP----------------DKD 95
             SPE +   +DPVKLAF KAK Y++   +SN  S  EQ+                  KD
Sbjct: 56  -TSPEAQTGPVDPVKLAFNKAKTYKEESGKSNPGSGIEQSDANGENSVNQGDAVDGRQKD 114

Query: 96  V---ARAAVEKAKEYKKNKDTVSFQN--GTNSGFKGEG--RGNLPKEVGGKKEGLKISSI 148
           +    + A+EKAK+YK+NK     +   G  +G + +G     L   VG K+  L +S I
Sbjct: 115 LPVSLKIAMEKAKKYKQNKGVAIAETTQGLPTGNQTQGGRERTLENSVGEKEGKLSVSKI 174

Query: 149 DFMGLNFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVGDTSKFGESTVLRPGPKQEEN 208
           DF+GL+F DKK+ +GLP GLVPVTD F++GD  EVE IVGD +KF   T   P   +EE 
Sbjct: 175 DFVGLDFGDKKKTRGLPPGLVPVTDSFSDGDLTEVEFIVGDATKFDAVTDPEPEQTKEEE 234

Query: 209 LEFYKPKVSTWGVFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSV 268
            E YKP VSTWGVFPRPGNISKTFGGGR IRPG+VLET E +A +E RT+QLLAAYKK  
Sbjct: 235 SELYKPTVSTWGVFPRPGNISKTFGGGRVIRPGEVLETDEEKAMREVRTKQLLAAYKKRT 294

Query: 269 GLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQ 328
           GL++DPKLKSECE+ALKDGD LM++GKLKEALP+YEKVM+K+ FKSELHGLAALQWSIC 
Sbjct: 295 GLDIDPKLKSECEEALKDGDLLMNAGKLKEALPYYEKVMDKITFKSELHGLAALQWSICL 354

Query: 329 DSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQV 365
           DSL+R  EA+ MYEKL+SHPNA VSK+ARQF +SFQ 
Sbjct: 355 DSLNRSNEAQSMYEKLKSHPNAKVSKKARQFSYSFQA 391

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|164605522|dbj|BAF98588.1| CM0216.540.nc [Lotus japonicus]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 215/397 (54%), Positives = 265/397 (66%), Gaps = 38/397 (9%)

Query: 1   MASLQTSWLSSVSTIKN------KNDSSAKQKPK-LSSLKLSFFLNATSNNDEASEQPIS 53
           MASL++ WL  + + KN       N S     P   ++ KL   L  +SNN E+SE    
Sbjct: 1   MASLRSPWLRCIVSPKNGAIFPSTNVSVCMCLPSSTTTFKLCCAL--SSNNAESSE---- 54

Query: 54  ENSPEPEAS-LDPVKLAFEKAKAYRKLK-ESNSDSKYEQNP----------------DKD 95
             SPE +   +DPVKLAF KAK Y++   +SN  S  EQ+                  KD
Sbjct: 55  PTSPEAQTGPVDPVKLAFNKAKTYKEESGKSNPGSGIEQSDANGENSVNQGDAVDGRQKD 114

Query: 96  V---ARAAVEKAKEYKKNKDTVSFQN--GTNSGFKGEG--RGNLPKEVGGKKEGLKISSI 148
           +    + A+EKAK+YK+NK     +   G  +G + +G     L   VG K+  L +S I
Sbjct: 115 LPVSLKIAMEKAKKYKQNKGVAIAETTQGLPTGNQTQGGRERTLENSVGEKEGKLSVSKI 174

Query: 149 DFMGLNFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVGDTSKFGESTVLRPGPKQEEN 208
           DF+GL+F DKK+ +GLP GLVPVTD F++GD  EVE IVGD +KF   T   P   +EE 
Sbjct: 175 DFVGLDFGDKKKTRGLPPGLVPVTDSFSDGDLTEVEFIVGDATKFDAVTDPEPEQTKEEE 234

Query: 209 LEFYKPKVSTWGVFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSV 268
            E YKP VSTWGVFPRPGNISKTFGGGR IRPG+VLET E +A +E RT+QLLAAYKK  
Sbjct: 235 SELYKPTVSTWGVFPRPGNISKTFGGGRVIRPGEVLETDEEKAMREVRTKQLLAAYKKRT 294

Query: 269 GLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQ 328
           GL++DPKLKSECE+ALKDGD LM++GKLKEALP+YEKVM+K+ FKSELHGLAALQWSIC 
Sbjct: 295 GLDIDPKLKSECEEALKDGDLLMNAGKLKEALPYYEKVMDKITFKSELHGLAALQWSICL 354

Query: 329 DSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQV 365
           DSL+R  EA+ MYEKL+SHPNA VSK+ARQF +SFQ 
Sbjct: 355 DSLNRSNEAQSMYEKLKSHPNAKVSKKARQFSYSFQA 391

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823763|ref|XP_002879764.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297325603|gb|EFH56023.1| binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  367 bits (941), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 210/374 (56%), Positives = 262/374 (70%), Gaps = 24/374 (6%)

Query: 1   MASLQTSWLSSVSTIKNKNDSSAKQKPKLSSLKLSFFLNATSNNDEASEQPISENSPEPE 60
           MAS   SWLSS  T          Q+PK  SLKLS F   ++++ + S         E E
Sbjct: 25  MASFNHSWLSSPLTETPTCFLYPSQQPK--SLKLSLFRTRSNSSSDRSS--------EVE 74

Query: 61  ASLDPVKLAFEKAKAYRKLKESNSDSKYEQNP-DKDV---ARAAVEKAKEYKKNK----D 112
            ++DPVKLA +KA+AY+K K    +   EQN  D+++    +AA++KA +YKK K    D
Sbjct: 75  LAVDPVKLALKKAEAYKKSKSEGKER--EQNAGDEELPLSVKAAMQKANDYKKRKGLGTD 132

Query: 113 TV--SFQNGTNSGFKGEGRGNLPKEVGGKKEGLKISSIDFMGLNFADKKEGKGLPAGLVP 170
            V  +  + T   F       + ++   KK+ LK+SSIDFMGL FADKK  +GLPAGLVP
Sbjct: 133 AVEEAKPSSTEQSFV-RSSNKVVEDNDVKKKELKVSSIDFMGLGFADKKSTRGLPAGLVP 191

Query: 171 VTDPFAEGDTPEVEIIVGDTSKFGESTVLRPGPKQEENLEFYKPKVSTWGVFPRPGNISK 230
           + D   EGD PEVE IVGD ++F E  V     + + N + YKPKVSTWGVFPRP NISK
Sbjct: 192 IVDYLPEGDLPEVEFIVGDKTRFAEK-VKEVEQEGDGNSDVYKPKVSTWGVFPRPSNISK 250

Query: 231 TFGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSL 290
           TFGGGRT+RPGD +ETAE R  +EE+T++LL AYK+S+GLN+DPKLK ECEKA+++G+SL
Sbjct: 251 TFGGGRTLRPGDSVETAEERIVREEQTKKLLIAYKESIGLNIDPKLKLECEKAIEEGNSL 310

Query: 291 MDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNA 350
           MDSGKLKEALP+YEKVM K+VFKSELHGLAALQWSICQDSL +  +AR MYEKL SHPN+
Sbjct: 311 MDSGKLKEALPYYEKVMEKIVFKSELHGLAALQWSICQDSLRKTDKARRMYEKLISHPNS 370

Query: 351 LVSKRARQFMFSFQ 364
            VSK+ARQFMFSFQ
Sbjct: 371 GVSKKARQFMFSFQ 384

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	368
TAIR|locus:2040369	465	AT2G38780 "AT2G38780" [Arabido	0.956	0.756	0.533	1.1e-87

TAIR|locus:2040369 AT2G38780 "AT2G38780" [Arabidopsis thaliana (taxid:3702)]

 Score = 876 (313.4 bits), Expect = 1.1e-87, P = 1.1e-87
 Identities = 199/373 (53%), Positives = 239/373 (64%)

Query:     1 MASLQTSWLSSVSTIKNKNDXXXXXXXXXXXXXXXXXXNATSNNDEASEQPISENSPEPE 60
             MAS   SWLSS  T   +                       SN    S  P  + S E E
Sbjct:    31 MASFNHSWLSSPLT---ETPAFFFSPSQHPKSLKLSLFRTRSN----SSSP--DRSSEVE 81

Query:    61 ASLDPVKLAFEKAKAYRKLKESNSDSKYEQNP-DKDV---ARAAVEKAKEYKKNK----D 112
               +DPVKLA +KA+AY+K K  +   K E+N  D+++    +AA++KA +YKK K    D
Sbjct:    82 LDVDPVKLALKKAEAYKKSK--SEQKKPEKNAGDEELPLSVKAAMQKANDYKKRKGLGTD 139

Query:   113 TVSFQNGTNSGFKGEGRGNLPKEVGG-KKEGLKISSIDFMGLNFADKKEGKGLPAGLVPV 171
              V+    +N+        N   E    KK+ LK+SSIDFMGL FADKK  +GLPAGLVPV
Sbjct:   140 AVAKAKPSNTDQSFVRLANKVVEDNDVKKKELKVSSIDFMGLGFADKKSTRGLPAGLVPV 199

Query:   172 TDPFAEGDTPEVEIIVGDTSKFGESTVLRPGPKQEENLEFYKPKVSTWGVFPRPGNISKT 231
              D   EGD PEVE IVGD ++F E  V     + + N + YKPKVSTWGVFPRP NISKT
Sbjct:   200 VDYLPEGDLPEVEFIVGDKTRFAEK-VKEVEQEGDGNSDVYKPKVSTWGVFPRPSNISKT 258

Query:   232 FGGGRTIRPGDVLXXXXXXXXXXXXXXQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLM 291
             FGGGRT+RPGD +              +LL AYK+S+GLN+DPKLK ECEKA+ +G+SLM
Sbjct:   259 FGGGRTLRPGDSVETAEERIVREEKTKKLLIAYKESLGLNIDPKLKLECEKAIDEGNSLM 318

Query:   292 DSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNAL 351
             DSGKLKEALP+YEKVM K+VFKSELHGLAALQWSICQDSL +  +AR MYEKL SHPN  
Sbjct:   319 DSGKLKEALPYYEKVMEKIVFKSELHGLAALQWSICQDSLRKTDKARRMYEKLISHPNPG 378

Query:   352 VSKRARQFMFSFQ 364
             VSK+ARQFMFSFQ
Sbjct:   379 VSKKARQFMFSFQ 391


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.130   0.366    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      368       336   0.00092  116 3  11 23  0.37    35
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  218 KB (2120 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  30.30u 0.09s 30.39t   Elapsed:  00:00:02
  Total cpu time:  30.30u 0.09s 30.39t   Elapsed:  00:00:02
  Start:  Mon May 20 22:11:56 2013   End:  Mon May 20 22:11:58 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	368
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.23
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.1
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.95
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.94
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.92
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.77
PRK10803	263	tol-pal system protein YbgF; Provisional	97.71
PF13512	142	TPR_18: Tetratricopeptide repeat	97.66
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.55
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.45
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.43
PF12688	120	TPR_5: Tetratrico peptide repeat	97.39
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.29
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.28
PF13371	73	TPR_9: Tetratricopeptide repeat	97.27
PRK15359	144	type III secretion system chaperone protein SscB;	97.27
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.24
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.23
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.11
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	96.99
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.89
PF12688	120	TPR_5: Tetratrico peptide repeat	96.86
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.85
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.84
PRK15359	144	type III secretion system chaperone protein SscB;	96.78
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.68
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	96.65
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	96.59
TIGR02552	135	LcrH_SycD type III secretion low calcium response	96.52
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	96.5
KOG0553	304	consensus TPR repeat-containing protein [General f	96.48
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.45
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	96.44
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	96.4
PRK10803	263	tol-pal system protein YbgF; Provisional	96.4
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	96.37
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	96.37
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	96.32
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.28
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	96.18
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.94
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	95.93
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	95.93
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	95.87
PRK11788	389	tetratricopeptide repeat protein; Provisional	95.78
PRK10370	198	formate-dependent nitrite reductase complex subuni	95.72
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	95.69
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	95.55
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	95.49
PRK10370	198	formate-dependent nitrite reductase complex subuni	95.42
PRK12370	553	invasion protein regulator; Provisional	95.32
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	95.28
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	95.28
PRK11189	296	lipoprotein NlpI; Provisional	95.26
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	95.13
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	94.94
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	94.91
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	94.91
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	94.83
PRK11788	389	tetratricopeptide repeat protein; Provisional	94.78
COG3118	304	Thioredoxin domain-containing protein [Posttransla	94.75
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	94.73
PF13428	44	TPR_14: Tetratricopeptide repeat	94.6
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	94.57
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	94.49
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	94.45
PRK15331	165	chaperone protein SicA; Provisional	94.34
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	94.32
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	94.23
KOG0547	606	consensus Translocase of outer mitochondrial membr	94.16
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	94.14
PRK12370	553	invasion protein regulator; Provisional	93.98
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	93.8
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	93.63
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	93.33
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	93.24
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	92.99
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	92.96
PRK11189	296	lipoprotein NlpI; Provisional	92.95
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	92.79
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	92.65
KOG4234	271	consensus TPR repeat-containing protein [General f	92.43
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	92.3
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	92.16
COG4105	254	ComL DNA uptake lipoprotein [General function pred	92.15
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	91.89
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	91.82
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	91.81
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	90.97
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	90.63
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	90.62
PRK14574	822	hmsH outer membrane protein; Provisional	90.3
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	89.99
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	89.68
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	89.58
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	89.48
KOG4648	536	consensus Uncharacterized conserved protein, conta	89.24
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	88.89
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	88.7
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	88.63
COG4700	251	Uncharacterized protein conserved in bacteria cont	88.44
PF03704	146	BTAD: Bacterial transcriptional activator domain;	88.37
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	88.27
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	88.1
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	87.81
PF03745	62	DUF309: Domain of unknown function (DUF309); Inter	87.51
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	87.28
PRK14574	822	hmsH outer membrane protein; Provisional	87.05
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	86.84
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	86.42
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	86.37
KOG2076	895	consensus RNA polymerase III transcription factor	86.09
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	85.06
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	84.79
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	84.67
PRK14720	906	transcript cleavage factor/unknown domain fusion p	84.33
PF13428	44	TPR_14: Tetratricopeptide repeat	84.03
KOG2076	895	consensus RNA polymerase III transcription factor	83.91
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	83.9
COG0457	291	NrfG FOG: TPR repeat [General function prediction	83.63
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	83.42
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	82.76
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	82.65
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	82.02
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	81.55
COG4783	484	Putative Zn-dependent protease, contains TPR repea	81.31
KOG1126	638	consensus DNA-binding cell division cycle control	81.14
KOG1125	579	consensus TPR repeat-containing protein [General f	80.61
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	80.55
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	80.01

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.23  E-value=5e-06  Score=60.35  Aligned_cols=62  Identities=19%  Similarity=0.161  Sum_probs=55.3

Q ss_pred             HHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      |..|..+|..|+|.+|+..|+.++..-+.    ..++.++|+.||...|+.++|+.+|+++. ..|+
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~----~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~   63 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPD----NPEAWYLLGRILYQQGRYDEALAYYERALELDPD   63 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTT----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            67899999999999999999999988755    78999999999999999999999999984 5664

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.10  E-value=1.3e-05  Score=58.16  Aligned_cols=61  Identities=23%  Similarity=0.302  Sum_probs=52.8

Q ss_pred             HHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC-HHHHH
Q 017641          290 LMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN-ALVSK  354 (368)
Q Consensus       290 AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~-~eVrK  354 (368)
                      ||+.|+|.+|+.+|+++++.-|.    ..++.+.|+.||-..|+.++|+.+++++. .+|+ +.+..
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~   63 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPD----NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ   63 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTT----SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence            68999999999999999999877    46788899999999999999999999996 7888 55443

...

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.95  E-value=8.3e-05  Score=57.20  Aligned_cols=78  Identities=17%  Similarity=0.168  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHH
Q 017641          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQ  358 (368)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkr  358 (368)
                      .+..+..|..++..|+|.+|+.+|+.++..-+... .-..+.+.++.||...|+.++|+.+|+++. .+|+..+..+|.+
T Consensus        39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~  117 (119)
T TIGR02795        39 PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP-KAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQK  117 (119)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC-cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence            45578899999999999999999999998766443 334667888999999999999999999985 7999888888843

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.94  E-value=5.9e-05  Score=67.38  Aligned_cols=75  Identities=20%  Similarity=0.241  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHH
Q 017641          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSK  354 (368)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrK  354 (368)
                      ..+..|+.|..+|+.|+|.+|+..|+++.+.-+. |.+...+++|++.||-..|+.++|+..|+++. .||+..-..
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~-s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~   79 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN-SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD   79 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence            3567999999999999999999999999988555 88999999999999999999999999999974 788865433

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.92  E-value=9.7e-05  Score=56.81  Aligned_cols=69  Identities=13%  Similarity=0.106  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      .+..|..|..++..|+|.+|+.+|++++..-+ .+...-.+.++++.||...|+.++|+.+|+++. .+|+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~   71 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYP-KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK   71 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC
Confidence            35679999999999999999999999987754 344557889999999999999999999999986 4666

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.77  E-value=8.5e-05  Score=54.15  Aligned_cols=62  Identities=21%  Similarity=0.204  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcC-ChHHHHHHHHHHh
Q 017641          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH-RPKEARIMYEKLQ  345 (368)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G-R~~EAiaLYkkL~  345 (368)
                      ++..+..|..+|..|+|.+|+.+|++|++.-+.+    ..+.++++.||...| +.++|+..|++..
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~----~~~~~~~g~~~~~~~~~~~~A~~~~~~al   65 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN----AEAYYNLGLAYMKLGKDYEEAIEDFEKAL   65 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH----HHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            4567889999999999999999999999986554    568999999999999 7999999999864

...

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.71  E-value=0.00031  Score=66.73  Aligned_cols=87  Identities=16%  Similarity=0.188  Sum_probs=75.5

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHH
Q 017641          274 PKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALV  352 (368)
Q Consensus       274 ~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eV  352 (368)
                      |.-.......|..|..++..|+|.+|+.+|+++++.-+ .+..-.++-+.++.||...|+.++|+.+|+++. .||+..-
T Consensus       174 P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP-~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~  252 (263)
T PRK10803        174 PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP-KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG  252 (263)
T ss_pred             cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence            44333344579999999999999999999999998876 567778899999999999999999999999996 7999999


Q ss_pred             HHHHHHHhh
Q 017641          353 SKRARQFMF  361 (368)
Q Consensus       353 rKQAkrLly  361 (368)
                      .++|++.|-
T Consensus       253 a~~A~~rL~  261 (263)
T PRK10803        253 AKQAQKRLN  261 (263)
T ss_pred             HHHHHHHHh
Confidence            999988763

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.66  E-value=0.00021  Score=63.54  Aligned_cols=70  Identities=19%  Similarity=0.271  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (368)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (368)
                      .++.|+.|+.+|+.|+|.+|+..||.+.+.-|+ ++..-.++|||+-||=..++.++|++-|+++. -||.-
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~-g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~h   80 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPF-GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTH   80 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            346899999999999999999999999998887 67888999999999999999999999999996 47653

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.55  E-value=0.00034  Score=52.28  Aligned_cols=65  Identities=22%  Similarity=0.208  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch---HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---GLAALQWSICQDSLHRPKEARIMYEKL  344 (368)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG---GeaqLwLAiAydA~GR~~EAiaLYkkL  344 (368)
                      +......|..++..|+|.+|+.+|++|++....-..-+   +.+-..+++||...|++++|+.+|++.
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a   72 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA   72 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34456789999999999999999999998742222222   566677999999999999999999985

...

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.45  E-value=0.00054  Score=63.86  Aligned_cols=72  Identities=11%  Similarity=0.068  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 017641          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL  351 (368)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e  351 (368)
                      ..++.|..|..+|+.|+|.+|+..|+++++.-+ .|.+.-.+.+||+.||=..++.++|+..|++.. .||+-.
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~  103 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP  103 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC
Confidence            445689999999999999999999999998666 558888999999999999999999999999995 566543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.43  E-value=0.0027  Score=53.41  Aligned_cols=75  Identities=19%  Similarity=0.125  Sum_probs=63.8

Q ss_pred             hhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCH
Q 017641          275 KLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNA  350 (368)
Q Consensus       275 ~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~  350 (368)
                      ..--.....|..++.+|+.|+|.+|+..|+.+++.. ....+.-.+.+.||.||-..|+.++|+.+++++..++..
T Consensus        43 ~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~  117 (145)
T PF09976_consen   43 SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFK  117 (145)
T ss_pred             CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchH
Confidence            333445668889999999999999999999999977 556888999999999999999999999999886555543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.39  E-value=0.0009  Score=57.23  Aligned_cols=83  Identities=18%  Similarity=0.280  Sum_probs=45.4

Q ss_pred             HHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHH
Q 017641          258 RQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEA  337 (368)
Q Consensus       258 ke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EA  337 (368)
                      .+.+.-|++-.-..++....  .+..+..|..+..-|+|.+|+..|++++...+. ..+.+.++..+|+|+-+.||++||
T Consensus        18 ~~Ai~~Y~~Al~~gL~~~~~--~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~-~~~~~~l~~f~Al~L~~~gr~~eA   94 (120)
T PF12688_consen   18 EEAIPLYRRALAAGLSGADR--RRALIQLASTLRNLGRYDEALALLEEALEEFPD-DELNAALRVFLALALYNLGRPKEA   94 (120)
T ss_pred             HHHHHHHHHHHHcCCCchHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-ccccHHHHHHHHHHHHHCCCHHHH
Confidence            44555555555444443322  234555666666666666666666666554322 234555556666666666666666


Q ss_pred             HHHHHH
Q 017641          338 RIMYEK  343 (368)
Q Consensus       338 iaLYkk  343 (368)
                      +.+.=.
T Consensus        95 l~~~l~  100 (120)
T PF12688_consen   95 LEWLLE  100 (120)
T ss_pred             HHHHHH
Confidence            666544

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.29  E-value=0.0018  Score=52.07  Aligned_cols=78  Identities=14%  Similarity=-0.006  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHH----HHHH
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALV----SKRA  356 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eV----rKQA  356 (368)
                      ..+..|..++..|+|.+|+..|+.++..-+.    ...+...+++||...|+.++|+..|++.. .+|+...    .+++
T Consensus        53 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  128 (135)
T TIGR02552        53 YWLGLAACCQMLKEYEEAIDAYALAAALDPD----DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERA  128 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence            3556799999999999999999999887544    36677889999999999999999999985 5776554    7778


Q ss_pred             HHHhhhh
Q 017641          357 RQFMFSF  363 (368)
Q Consensus       357 krLlyiL  363 (368)
                      ..+++.|
T Consensus       129 ~~~~~~~  135 (135)
T TIGR02552       129 EAMLESL  135 (135)
T ss_pred             HHHHhcC
Confidence            8777764

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.28  E-value=0.00097  Score=58.73  Aligned_cols=73  Identities=21%  Similarity=0.257  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641          277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (368)
Q Consensus       277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (368)
                      ...++..|..|..++..|+|.+|+..|+.++..-+ .+...-.+.+.++.||.+.|+.++|+..|+++. .||+.
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~  103 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH  103 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC
Confidence            44556789999999999999999999999988665 344566788999999999999999999999995 57743

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.27  E-value=0.0017  Score=47.60  Aligned_cols=70  Identities=20%  Similarity=0.153  Sum_probs=59.3

Q ss_pred             HHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHHHh
Q 017641          287 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQFM  360 (368)
Q Consensus       287 Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkrLl  360 (368)
                      ...++.+++|..|+..++.++..-|..    -.+.+.+++||-..|+.++|+..|++.. .+|+.....+++++|
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l   72 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDD----PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML   72 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCccc----chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence            356899999999999999999997763    3344558999999999999999999985 799988888887765

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.27  E-value=0.0031  Score=53.74  Aligned_cols=100  Identities=13%  Similarity=0.121  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcC
Q 017641          253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH  332 (368)
Q Consensus       253 r~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G  332 (368)
                      ...+..+.+..|+.-  +.++|...   +..+..|..++..|+|.+|+..|+.|+.+-+.    ...+.+.|+.||...|
T Consensus        36 ~~g~~~~A~~~~~~a--l~~~P~~~---~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~----~~~a~~~lg~~l~~~g  106 (144)
T PRK15359         36 QEGDYSRAVIDFSWL--VMAQPWSW---RAHIALAGTWMMLKEYTTAINFYGHALMLDAS----HPEPVYQTGVCLKMMG  106 (144)
T ss_pred             HcCCHHHHHHHHHHH--HHcCCCcH---HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC----CcHHHHHHHHHHHHcC
Confidence            344455566666654  35556543   33577899999999999999999999987553    4678888999999999


Q ss_pred             ChHHHHHHHHHHh-cCCCH----HHHHHHHHHhh
Q 017641          333 RPKEARIMYEKLQ-SHPNA----LVSKRARQFMF  361 (368)
Q Consensus       333 R~~EAiaLYkkL~-sHP~~----eVrKQAkrLly  361 (368)
                      |.++|+..|++.. ..|+-    .++.++..++=
T Consensus       107 ~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~  140 (144)
T PRK15359        107 EPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD  140 (144)
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence            9999999999975 45554    67777776653

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.24  E-value=0.0037  Score=55.09  Aligned_cols=65  Identities=15%  Similarity=0.024  Sum_probs=57.5

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP  348 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP  348 (368)
                      .+..|..++.+|+|.+|+..|+.+++..+. +...-++.+.++.+|..+|+.++|+.++++|. +||
T Consensus       169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       169 ELYVARFYLKRGAYVAAINRFETVVENYPD-TPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHCCC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            357788999999999999999999988765 35557889999999999999999999999996 677

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.23  E-value=0.0012  Score=45.07  Aligned_cols=57  Identities=28%  Similarity=0.261  Sum_probs=31.0

Q ss_pred             HHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641          284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (368)
Q Consensus       284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (368)
                      +..|..++..|+|.+|+.+|+.++...+...    .+.++++.||-..++.++|+.+|+++
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~   60 (100)
T cd00189           4 LNLGNLYYKLGDYDEALEYYEKALELDPDNA----DAYYNLAAAYYKLGKYEEALEDYEKA   60 (100)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHhcCCccH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555555555555443322    44555555555555555555555554

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.11  E-value=0.0063  Score=41.56  Aligned_cols=64  Identities=25%  Similarity=0.211  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 017641          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP  348 (368)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP  348 (368)
                      ...+..|..++..|++.+|+.+|+.++...+...    .+...++.+|...|+.++|+.+++++. .+|
T Consensus        35 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          35 DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA----KAYYNLGLAYYKLGKYEEALEAYEKALELDP   99 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch----hHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence            4467789999999999999999999998766544    777889999999999999999999985 455

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=96.99  E-value=0.0017  Score=49.77  Aligned_cols=56  Identities=21%  Similarity=0.179  Sum_probs=27.4

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHH
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEK  343 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkk  343 (368)
                      .|..|..+|..|+|.+|++.|++  ..+...   .-.+.+.+|.||-.+|+.+|||..+++
T Consensus        28 ~~~la~~~~~~~~y~~A~~~~~~--~~~~~~---~~~~~~l~a~~~~~l~~y~eAi~~l~~   83 (84)
T PF12895_consen   28 LYNLAQCYFQQGKYEEAIELLQK--LKLDPS---NPDIHYLLARCLLKLGKYEEAIKALEK   83 (84)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHC--HTHHHC---HHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHH--hCCCCC---CHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            34445556666666666555555  111111   134444455566666666666555543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=96.89  E-value=0.0039  Score=60.90  Aligned_cols=100  Identities=17%  Similarity=0.149  Sum_probs=78.8

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHH
Q 017641          246 TAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWS  325 (368)
Q Consensus       246 teEEkaar~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLA  325 (368)
                      ..-..+-+..+..+.+..|++-+  .++|...   ...+..|..++..|+|.+|+..|++|+.+-+.    ...+.+.++
T Consensus         7 ~~a~~a~~~~~~~~Ai~~~~~Al--~~~P~~~---~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~----~~~a~~~lg   77 (356)
T PLN03088          7 DKAKEAFVDDDFALAVDLYTQAI--DLDPNNA---ELYADRAQANIKLGNFTEAVADANKAIELDPS----LAKAYLRKG   77 (356)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHH--HhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC----CHHHHHHHH
Confidence            33455667778888999998655  5566543   34678899999999999999999999998664    467889999


Q ss_pred             HHHHhcCChHHHHHHHHHHh-cCCC-HHHHH
Q 017641          326 ICQDSLHRPKEARIMYEKLQ-SHPN-ALVSK  354 (368)
Q Consensus       326 iAydA~GR~~EAiaLYkkL~-sHP~-~eVrK  354 (368)
                      .||..+|+.++|+..|+++. .+|+ ..+..
T Consensus        78 ~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~  108 (356)
T PLN03088         78 TACMKLEEYQTAKAALEKGASLAPGDSRFTK  108 (356)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            99999999999999999985 5665 44433

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.86  E-value=0.0096  Score=50.99  Aligned_cols=75  Identities=19%  Similarity=0.205  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHH
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRAR  357 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAk  357 (368)
                      -.|+.+..+...|+..+|+++|+.|+.. .......-.+.|+|+.+|..+||.++|+++-++.. .||..+.....+
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~   78 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALR   78 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHH
Confidence            4688899999999999999999999985 44455556799999999999999999999999996 689977766555

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=96.85  E-value=0.0076  Score=58.87  Aligned_cols=65  Identities=11%  Similarity=0.011  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      .+.+..|..+|..|+|.+|+++|++|+.+-+..    ..+.+.++.||..+|+.++|+..|+++. ..|+
T Consensus         3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~----~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~   68 (356)
T PLN03088          3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNN----AELYADRAQANIKLGNFTEAVADANKAIELDPS   68 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            457788999999999999999999999987765    3567889999999999999999999996 4553

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.84  E-value=0.0037  Score=66.70  Aligned_cols=82  Identities=20%  Similarity=0.197  Sum_probs=64.6

Q ss_pred             CcCChhh-HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch-----------HHHHHHHHHHHHhcCChHHH
Q 017641          270 LNVDPKL-KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH-----------GLAALQWSICQDSLHRPKEA  337 (368)
Q Consensus       270 l~Vd~~~-~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG-----------GeaqLwLAiAydA~GR~~EA  337 (368)
                      +..-|++ ..--+..|..+-.+.++|+|.+|++.||+|+..|-..-..+           --+.+|||-+|+-+|+++||
T Consensus       164 ~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea  243 (652)
T KOG2376|consen  164 LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA  243 (652)
T ss_pred             HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            3444554 33667899999999999999999999999977665444433           35678999999999999999


Q ss_pred             HHHHHHHhcCCCHH
Q 017641          338 RIMYEKLQSHPNAL  351 (368)
Q Consensus       338 iaLYkkL~sHP~~e  351 (368)
                      .++|..+.+|-..+
T Consensus       244 ~~iy~~~i~~~~~D  257 (652)
T KOG2376|consen  244 SSIYVDIIKRNPAD  257 (652)
T ss_pred             HHHHHHHHHhcCCC
Confidence            99999998654433

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=96.78  E-value=0.0053  Score=52.32  Aligned_cols=63  Identities=11%  Similarity=0.016  Sum_probs=54.4

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      .+..|..++..|+|.+|+.+|..++..=+..    ..+.+.++.|+...|+.++|+..|++.. -.|.
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~   90 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWS----WRAHIALAGTWMMLKEYTTAINFYGHALMLDAS   90 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            4567999999999999999999998876654    5677889999999999999999999985 4553

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.68  E-value=0.043  Score=45.57  Aligned_cols=106  Identities=17%  Similarity=0.218  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHHHhhcCCcCCh-h----hHHHHHHH-----HHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHH
Q 017641          251 AAKEERTRQLLAAYKKSVGLNVDP-K----LKSECEKA-----LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLA  320 (368)
Q Consensus       251 aar~~rtke~LaaYrk~~Gl~Vd~-~----~~~e~eea-----~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGea  320 (368)
                      ..+....++.|+-|+...=-+++. .    ....+++.     .+.+..+.+.|+|.+|+..++.++..=|.+-    .+
T Consensus        23 ~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E----~~   98 (146)
T PF03704_consen   23 EEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDE----EA   98 (146)
T ss_dssp             HHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H----HH
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCH----HH
Confidence            445567788888898776555554 1    12233322     2336678889999999999999999987754    56


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHh--------cCCCHHHHHHHHHHh
Q 017641          321 ALQWSICQDSLHRPKEARIMYEKLQ--------SHPNALVSKRARQFM  360 (368)
Q Consensus       321 qLwLAiAydA~GR~~EAiaLYkkL~--------sHP~~eVrKQAkrLl  360 (368)
                      ..+|..||-+.||+.+|+..|++++        ..|+++++.-.++||
T Consensus        99 ~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~~~il  146 (146)
T PF03704_consen   99 YRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALYREIL  146 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHhC
Confidence            6778899999999999999999884        369999888777765

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=96.65  E-value=0.0039  Score=47.73  Aligned_cols=68  Identities=18%  Similarity=0.244  Sum_probs=52.3

Q ss_pred             hcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhc-CCCHHHHHHHHHHhh
Q 017641          292 DSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS-HPNALVSKRARQFMF  361 (368)
Q Consensus       292 erGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s-HP~~eVrKQAkrLly  361 (368)
                      +.|+|..|+.+||++++..+.++  -..+.+++|.||=..|+.++|+.+++++.. +.+..++-...+.++
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~   69 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLL   69 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence            47999999999999999999754  556777789999999999999999999653 334455544444444

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=96.59  E-value=0.014  Score=49.75  Aligned_cols=72  Identities=19%  Similarity=0.138  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      ...+...+..|..++..|+|.+|+.+|++|+...+. +..-..+...++++|...|++++|+.+|++.. .+|.
T Consensus        32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~  104 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID-PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF  104 (168)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            346667788999999999999999999999987542 32234577789999999999999999999975 4554

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=96.52  E-value=0.023  Score=45.63  Aligned_cols=77  Identities=19%  Similarity=0.220  Sum_probs=61.7

Q ss_pred             CcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 017641          270 LNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP  348 (368)
Q Consensus       270 l~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP  348 (368)
                      +.++|...   ...+..|..++..|+|.+|+..|+++.+.-+..    ..+...++.||-..|++++|+.+|+++. .+|
T Consensus        10 l~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p   82 (135)
T TIGR02552        10 LGLDSEQL---EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN----SRYWLGLAACCQMLKEYEEAIDAYALAAALDP   82 (135)
T ss_pred             HcCChhhH---HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            34566643   347889999999999999999999998876553    4677789999999999999999999995 566


Q ss_pred             C-HHHH
Q 017641          349 N-ALVS  353 (368)
Q Consensus       349 ~-~eVr  353 (368)
                      . ..+.
T Consensus        83 ~~~~~~   88 (135)
T TIGR02552        83 DDPRPY   88 (135)
T ss_pred             CChHHH
Confidence            4 3443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=96.50  E-value=0.026  Score=52.25  Aligned_cols=65  Identities=17%  Similarity=0.109  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      ......|..+++.|++.+|+.+|++++...+....+.....+.++.+|-..|+.++|+.+|+++.
T Consensus       149 ~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~  213 (355)
T cd05804         149 WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI  213 (355)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            33566799999999999999999999998876656666667779999999999999999999974

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.48  E-value=0.027  Score=55.96  Aligned_cols=81  Identities=21%  Similarity=0.211  Sum_probs=64.5

Q ss_pred             hhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCc-----------cch-------------------HHHHHHH
Q 017641          275 KLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS-----------ELH-------------------GLAALQW  324 (368)
Q Consensus       275 ~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S-----------~LG-------------------GeaqLwL  324 (368)
                      +.++.+++.=.+|..+|+.++|++||..|.+|+.+.|.+-           +||                   -++-.-|
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL  155 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL  155 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence            4778888888889999999999999999999999887664           444                   2344457


Q ss_pred             HHHHHhcCChHHHHHHHHHH-hcCCCHHHHHH
Q 017641          325 SICQDSLHRPKEARIMYEKL-QSHPNALVSKR  355 (368)
Q Consensus       325 AiAydA~GR~~EAiaLYkkL-~sHP~~eVrKQ  355 (368)
                      -+||=+.|++++|+.-|++- .--|+-++=|.
T Consensus       156 G~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~  187 (304)
T KOG0553|consen  156 GLAYLALGKYEEAIEAYKKALELDPDNESYKS  187 (304)
T ss_pred             HHHHHccCcHHHHHHHHHhhhccCCCcHHHHH
Confidence            78899999999999999885 57888776554

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.45  E-value=0.0037  Score=39.56  Aligned_cols=31  Identities=23%  Similarity=0.251  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          319 LAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       319 eaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      ++.++++.||...|+.++|+.+|++|. .||+
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            478899999999999999999999996 7886

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=96.44  E-value=0.02  Score=61.65  Aligned_cols=99  Identities=11%  Similarity=0.045  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhc
Q 017641          252 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL  331 (368)
Q Consensus       252 ar~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~  331 (368)
                      .|..+..+.|..++.-.  ..+|...   ...+..|..+.+-|+|.+|++.|++++..-+    ---.+.++|+.+|.-.
T Consensus       131 ~~~~~~eeA~~~~~~~l--~~~p~~~---~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p----~~~~~~~~~a~~l~~~  201 (694)
T PRK15179        131 KRQQGIEAGRAEIELYF--SGGSSSA---REILLEAKSWDEIGQSEQADACFERLSRQHP----EFENGYVGWAQSLTRR  201 (694)
T ss_pred             HHhccHHHHHHHHHHHh--hcCCCCH---HHHHHHHHHHHHhcchHHHHHHHHHHHhcCC----CcHHHHHHHHHHHHHc
Confidence            34455556666665333  3334332   2366678888888888888888888887222    1236778888888888


Q ss_pred             CChHHHHHHHHHHhcCCCHHHHHHHHHH
Q 017641          332 HRPKEARIMYEKLQSHPNALVSKRARQF  359 (368)
Q Consensus       332 GR~~EAiaLYkkL~sHP~~eVrKQAkrL  359 (368)
                      |+.++|.+.|++...+-...++|-++.|
T Consensus       202 G~~~~A~~~~~~a~~~~~~~~~~~~~~~  229 (694)
T PRK15179        202 GALWRARDVLQAGLDAIGDGARKLTRRL  229 (694)
T ss_pred             CCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence            8888888888888765556666656554

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=96.40  E-value=0.041  Score=47.43  Aligned_cols=73  Identities=21%  Similarity=0.155  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641          277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (368)
Q Consensus       277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (368)
                      ...+...+..|..++..|+|.+|+.+|++|++.-+-.. --+.+...++.||...|+.++|+.+|++.. .||+.
T Consensus        32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  105 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN-DRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ  105 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            34555678999999999999999999999987644322 135688889999999999999999999885 57754

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.40  E-value=0.019  Score=54.78  Aligned_cols=72  Identities=11%  Similarity=0.123  Sum_probs=61.7

Q ss_pred             HHHHHHHHHH-HhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHH
Q 017641          281 EKALKDGDSL-MDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVS  353 (368)
Q Consensus       281 eea~~~Gk~A-merGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVr  353 (368)
                      ...|..+..+ +..|+|.+|+..|++.+..-|. |.+-..+.+||+.+|-..|+.++|+..|+++. .||.-.-.
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~-s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~  216 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD-STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA  216 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch
Confidence            4568888876 7789999999999999988864 66778999999999999999999999999996 68874333

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=96.37  E-value=0.01  Score=63.87  Aligned_cols=69  Identities=17%  Similarity=0.220  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch------------------------------HHHHHHHHHHHHh
Q 017641          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH------------------------------GLAALQWSICQDS  330 (368)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG------------------------------GeaqLwLAiAydA  330 (368)
                      +..+-.|..++.+|.|.+|..+|+.++++.|-+....                              ..+++.+|+|++.
T Consensus        87 ~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~  166 (694)
T PRK15179         87 LFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDE  166 (694)
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence            3445557777777777777777777777666554322                              6788999999999


Q ss_pred             cCChHHHHHHHHHHh-cCCC
Q 017641          331 LHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       331 ~GR~~EAiaLYkkL~-sHP~  349 (368)
                      +|+++||+++|+++. -||+
T Consensus       167 ~g~~~~A~~~y~~~~~~~p~  186 (694)
T PRK15179        167 IGQSEQADACFERLSRQHPE  186 (694)
T ss_pred             hcchHHHHHHHHHHHhcCCC
Confidence            999999999999997 6776

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=96.37  E-value=0.014  Score=59.91  Aligned_cols=59  Identities=8%  Similarity=-0.100  Sum_probs=34.2

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      -+..|..++..|+|.+|++.|++|+++-+..    -.+...++.||..+|+.++|+.-|.++.
T Consensus       163 ~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~----~~a~~~~a~a~~~lg~~~eA~~~~~~~~  221 (615)
T TIGR00990       163 YSNRAACHNALGDWEKVVEDTTAALELDPDY----SKALNRRANAYDGLGKYADALLDLTASC  221 (615)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3444556666666666666666666554332    2445556666666666666666665553

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=96.32  E-value=0.026  Score=46.42  Aligned_cols=84  Identities=13%  Similarity=0.073  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChH
Q 017641          256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK  335 (368)
Q Consensus       256 rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~  335 (368)
                      +..+.+..|.+-.  ..+|..   ....+..|..++..|++.+|+.+|++++...+..    +.+...++.+|-..|+.+
T Consensus        46 ~~~~A~~~~~~~l--~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~g~~~  116 (234)
T TIGR02521        46 DLEVAKENLDKAL--EHDPDD---YLAYLALALYYQQLGELEKAEDSFRRALTLNPNN----GDVLNNYGTFLCQQGKYE  116 (234)
T ss_pred             CHHHHHHHHHHHH--HhCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcccHH
Confidence            4445555554432  223321   3445667889999999999999999998875543    467788899999999999


Q ss_pred             HHHHHHHHHhcCC
Q 017641          336 EARIMYEKLQSHP  348 (368)
Q Consensus       336 EAiaLYkkL~sHP  348 (368)
                      +|+.+|++...++
T Consensus       117 ~A~~~~~~~~~~~  129 (234)
T TIGR02521       117 QAMQQFEQAIEDP  129 (234)
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999987543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.28  E-value=0.013  Score=53.19  Aligned_cols=64  Identities=11%  Similarity=0.108  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      +.-+..|..|-.+|+.|+|.+|..+|+..+..=+-+.+    --+-|++|+++.|++++||..|.+..
T Consensus        33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~----y~~gLG~~~Q~~g~~~~AI~aY~~A~   96 (157)
T PRK15363         33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFD----YWFRLGECCQAQKHWGEAIYAYGRAA   96 (157)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH----HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            34455899999999999999999999998776655543    35678999999999999999998864

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=96.18  E-value=0.071  Score=44.86  Aligned_cols=80  Identities=20%  Similarity=0.162  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHH
Q 017641          277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKR  355 (368)
Q Consensus       277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQ  355 (368)
                      ..++...|.....++..|.+..+-..++..+.. ..+|.....+.|.+|.++-..|+.++|+.+|+++. .+|++.++..
T Consensus         8 ~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~-~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~   86 (145)
T PF09976_consen    8 AEQASALYEQALQALQAGDPAKAEAAAEQLAKD-YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPL   86 (145)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHH
Confidence            456778899999999999999998888887775 66678999999999999999999999999999996 5688888877


Q ss_pred             HH
Q 017641          356 AR  357 (368)
Q Consensus       356 Ak  357 (368)
                      |+
T Consensus        87 a~   88 (145)
T PF09976_consen   87 AR   88 (145)
T ss_pred             HH
Confidence            74

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.94  E-value=0.024  Score=58.86  Aligned_cols=65  Identities=23%  Similarity=0.233  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 017641          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS  346 (368)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s  346 (368)
                      +..+..|..++..|+|.+|+..|++|+++-+-.-. .-.+..+++.||-.+|+.++|++.|++-..
T Consensus        76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae-A~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE-AQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34788899999999999999999999999765311 113478999999999999999999998754

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=95.93  E-value=0.079  Score=43.62  Aligned_cols=61  Identities=15%  Similarity=0.131  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS  346 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s  346 (368)
                      ..+..|..++..|++.+|+.+|++++...+..    ..+.+.++.+|...|+.++|+.++++...
T Consensus       137 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~  197 (234)
T TIGR02521       137 SLENAGLCALKAGDFDKAEKYLTRALQIDPQR----PESLLELAELYYLRGQYKDARAYLERYQQ  197 (234)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            35667999999999999999999999876543    45778899999999999999999999864

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=95.93  E-value=0.068  Score=53.00  Aligned_cols=87  Identities=16%  Similarity=0.151  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCCh
Q 017641          255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP  334 (368)
Q Consensus       255 ~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~  334 (368)
                      .+..+.+..|++-..+.-++      ...+..+..+...|++.+|+..|+++++..+..    -.+...++.+|...|+.
T Consensus       717 g~~~~A~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~g~~  786 (899)
T TIGR02917       717 KDYPAAIQAYRKALKRAPSS------QNAIKLHRALLASGNTAEAVKTLEAWLKTHPND----AVLRTALAELYLAQKDY  786 (899)
T ss_pred             CCHHHHHHHHHHHHhhCCCc------hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCcCH
Confidence            34455555565544333332      234556778888888888888888888876654    36778889999999999


Q ss_pred             HHHHHHHHHHh-cCCCHH
Q 017641          335 KEARIMYEKLQ-SHPNAL  351 (368)
Q Consensus       335 ~EAiaLYkkL~-sHP~~e  351 (368)
                      ++|+.+|+++. .+|+..
T Consensus       787 ~~A~~~~~~~~~~~p~~~  804 (899)
T TIGR02917       787 DKAIKHYRTVVKKAPDNA  804 (899)
T ss_pred             HHHHHHHHHHHHhCCCCH
Confidence            99999999985 677643

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=95.87  E-value=0.037  Score=56.79  Aligned_cols=63  Identities=11%  Similarity=0.071  Sum_probs=47.5

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      .+..|..++..|+|.+|+..|++|+++-+.+    ..+.++|+.+|...|+.++|+.+|++.. .+|+
T Consensus       402 ~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~  465 (615)
T TIGR00990       402 YYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF----IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE  465 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCccC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            4556888888888888888888888776543    3456678888888888888888888764 5665

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=95.78  E-value=0.17  Score=47.37  Aligned_cols=62  Identities=18%  Similarity=0.146  Sum_probs=28.6

Q ss_pred             HHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641          286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (368)
Q Consensus       286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (368)
                      .|..++..|++.+|+.+|+++++.-+..   -..+...++.+|...|+.++|+.+++++. .+|+.
T Consensus       220 la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~  282 (389)
T PRK11788        220 LGDLALAQGDYAAAIEALERVEEQDPEY---LSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA  282 (389)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHChhh---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            3445555555555555555554432211   12233344455555555555555555543 34443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=95.72  E-value=0.091  Score=47.46  Aligned_cols=79  Identities=13%  Similarity=0.092  Sum_probs=43.9

Q ss_pred             HHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHH-HhcCC--
Q 017641          257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQ-DSLHR--  333 (368)
Q Consensus       257 tke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAy-dA~GR--  333 (368)
                      ..+.+..|+..+  ..+|...+   .-+..|..++..|+|.+|+..|++|+.+-+.+    ..+.+.+|+|+ ...|+  
T Consensus        55 ~~~~i~~l~~~L--~~~P~~~~---~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~----~~~~~~lA~aL~~~~g~~~  125 (198)
T PRK10370         55 PEAQLQALQDKI--RANPQNSE---QWALLGEYYLWRNDYDNALLAYRQALQLRGEN----AELYAALATVLYYQAGQHM  125 (198)
T ss_pred             HHHHHHHHHHHH--HHCCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcCCCC
Confidence            345555665444  33344333   24555777777777777777777777766654    23334445542 44444  


Q ss_pred             hHHHHHHHHHH
Q 017641          334 PKEARIMYEKL  344 (368)
Q Consensus       334 ~~EAiaLYkkL  344 (368)
                      .++|+.++++.
T Consensus       126 ~~~A~~~l~~a  136 (198)
T PRK10370        126 TPQTREMIDKA  136 (198)
T ss_pred             cHHHHHHHHHH
Confidence            25555555555

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=95.69  E-value=0.028  Score=52.67  Aligned_cols=80  Identities=18%  Similarity=0.221  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHhc-CchhhhhHHHHHHHhhccc--CccchHHHHHHHHHHHHhcCChHHHHHHHHHHhc-C-CCHHHHHH
Q 017641          281 EKALKDGDSLMDS-GKLKEALPFYEKVMNKMVF--KSELHGLAALQWSICQDSLHRPKEARIMYEKLQS-H-PNALVSKR  355 (368)
Q Consensus       281 eea~~~Gk~Amer-GkYr~AV~~lEkA~~~v~~--~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s-H-P~~eVrKQ  355 (368)
                      +.....|..+.+. |+|..|+++|++|++....  .+.....+.+++|.+|-.+|+.++|+.+|+++.. + -+...+=.
T Consensus       115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~  194 (282)
T PF14938_consen  115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS  194 (282)
T ss_dssp             HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence            3344557777777 8999999999999988553  4466688889999999999999999999999963 2 23333445


Q ss_pred             HHHHh
Q 017641          356 ARQFM  360 (368)
Q Consensus       356 AkrLl  360 (368)
                      +++++
T Consensus       195 ~~~~~  199 (282)
T PF14938_consen  195 AKEYF  199 (282)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=95.55  E-value=0.17  Score=47.45  Aligned_cols=106  Identities=12%  Similarity=0.049  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCC-
Q 017641          255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR-  333 (368)
Q Consensus       255 ~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR-  333 (368)
                      .+..+.+..|++=.  +..|......+..|..|..+|..|+|.+|+.+|+.++..-|.+... ..|...+++|+..+++ 
T Consensus        46 g~y~~Ai~~f~~l~--~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~~~~~~~~  122 (243)
T PRK10866         46 GNWKQAITQLEALD--NRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLTNMALDDS  122 (243)
T ss_pred             CCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHhhhhcchh
Confidence            34444555554433  3445554555568899999999999999999999999988887666 7888899999766652 


Q ss_pred             -----------------hHHHHHHHHHHh-cCCCHHHHHHHHHHhhhh
Q 017641          334 -----------------PKEARIMYEKLQ-SHPNALVSKRARQFMFSF  363 (368)
Q Consensus       334 -----------------~~EAiaLYkkL~-sHP~~eVrKQAkrLlyiL  363 (368)
                                       ..+|+..+++|. .||+-+-...|++.|--+
T Consensus       123 ~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l  170 (243)
T PRK10866        123 ALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFL  170 (243)
T ss_pred             hhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH
Confidence                             368999999996 899999999998765443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=95.49  E-value=0.081  Score=55.75  Aligned_cols=65  Identities=11%  Similarity=0.115  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (368)
                      ..+..|..++..|++.+|+.+|+.|+++-+.    ...+..+|+.+|...|+.++|++.|+++. .||+.
T Consensus       286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~----~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~  351 (656)
T PRK15174        286 IVTLYADALIRTGQNEKAIPLLQQSLATHPD----LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT  351 (656)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            3456699999999999999999999987544    35678889999999999999999999985 67764

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=95.42  E-value=0.13  Score=46.38  Aligned_cols=89  Identities=10%  Similarity=0.041  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHH-HhcCc--hhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcC
Q 017641          256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSL-MDSGK--LKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH  332 (368)
Q Consensus       256 rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~A-merGk--Yr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G  332 (368)
                      +..+.+..|++-.  .++|.....   .+..|..+ +..|+  +.+|...|++|+..-+.+.    .+.+.|+++|...|
T Consensus        88 ~~~~A~~a~~~Al--~l~P~~~~~---~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~----~al~~LA~~~~~~g  158 (198)
T PRK10370         88 DYDNALLAYRQAL--QLRGENAEL---YAALATVLYYQAGQHMTPQTREMIDKALALDANEV----TALMLLASDAFMQA  158 (198)
T ss_pred             CHHHHHHHHHHHH--HhCCCCHHH---HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHHcC
Confidence            4445556665444  344443222   45567765 56677  6999999999999988765    58899999999999


Q ss_pred             ChHHHHHHHHHHh-cCCCHHHH
Q 017641          333 RPKEARIMYEKLQ-SHPNALVS  353 (368)
Q Consensus       333 R~~EAiaLYkkL~-sHP~~eVr  353 (368)
                      +.++|++.|+++. ..|-..-|
T Consensus       159 ~~~~Ai~~~~~aL~l~~~~~~r  180 (198)
T PRK10370        159 DYAQAIELWQKVLDLNSPRVNR  180 (198)
T ss_pred             CHHHHHHHHHHHHhhCCCCccH
Confidence            9999999999974 45544333

>PRK12370 invasion protein regulator; Provisional

Probab=95.32  E-value=0.1  Score=53.48  Aligned_cols=60  Identities=7%  Similarity=-0.137  Sum_probs=41.6

Q ss_pred             HHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      .|..++..|++.+|+.+|++|+++-|...    .+..+++.+|-..||.++|+..|++.. -+|.
T Consensus       344 lg~~~~~~g~~~~A~~~~~~Al~l~P~~~----~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~  404 (553)
T PRK12370        344 LGLINTIHSEYIVGSLLFKQANLLSPISA----DIKYYYGWNLFMAGQLEEALQTINECLKLDPT  404 (553)
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            46667777778888888887777765543    345667777777777777777777764 4554

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=95.28  E-value=0.072  Score=52.83  Aligned_cols=61  Identities=16%  Similarity=0.065  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      ...+..|+.++..|+|.+|+..|++++..-+.    ..++...++.+|...|+.++|+..|+++.
T Consensus        23 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~   83 (899)
T TIGR02917        23 ESLIEAAKSYLQKNKYKAAIIQLKNALQKDPN----DAEARFLLGKIYLALGDYAAAEKELRKAL   83 (899)
T ss_pred             HHHHHHHHHHHHcCChHhHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34667777777777777777777777764333    44667777777777777777777777775

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=95.28  E-value=0.056  Score=53.06  Aligned_cols=58  Identities=22%  Similarity=0.184  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (368)
                      -.+..|+.++..|++.+|..+||+++..-|.     -.+.++|+.+|++.|++++|..+|++=
T Consensus       330 l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-----~~~~~~La~~~~~~g~~~~A~~~~~~~  387 (398)
T PRK10747        330 LWSTLGQLLMKHGEWQEASLAFRAALKQRPD-----AYDYAWLADALDRLHKPEEAAAMRRDG  387 (398)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3667899999999999999999999987543     355689999999999999999999964

>PRK11189 lipoprotein NlpI; Provisional

Probab=95.26  E-value=0.14  Score=48.29  Aligned_cols=84  Identities=15%  Similarity=0.108  Sum_probs=62.2

Q ss_pred             HHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHH
Q 017641          259 QLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEAR  338 (368)
Q Consensus       259 e~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAi  338 (368)
                      +.+..|.+-.  .++|..-   ..-+..|..++..|+|.+|+..|++|+++-|..    ..+.+.+++||-..||.++|+
T Consensus        82 ~A~~~~~~Al--~l~P~~~---~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~l~~~g~~~eA~  152 (296)
T PRK11189         82 LARNDFSQAL--ALRPDMA---DAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY----NYAYLNRGIALYYGGRYELAQ  152 (296)
T ss_pred             HHHHHHHHHH--HcCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHH
Confidence            3344454333  3445432   335677999999999999999999999876553    457788999999999999999


Q ss_pred             HHHHHHh-cCCCHH
Q 017641          339 IMYEKLQ-SHPNAL  351 (368)
Q Consensus       339 aLYkkL~-sHP~~e  351 (368)
                      ..|++.. .+|+.-
T Consensus       153 ~~~~~al~~~P~~~  166 (296)
T PRK11189        153 DDLLAFYQDDPNDP  166 (296)
T ss_pred             HHHHHHHHhCCCCH
Confidence            9998874 677654

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=95.13  E-value=0.051  Score=49.73  Aligned_cols=99  Identities=19%  Similarity=0.148  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhc
Q 017641          252 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL  331 (368)
Q Consensus       252 ar~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~  331 (368)
                      .+.-+..+.+..|++-+  .++|.....   ....+..+.+.|++.++.+.++......+.+..+.    ..++.||..+
T Consensus       157 ~~~G~~~~A~~~~~~al--~~~P~~~~~---~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~----~~la~~~~~l  227 (280)
T PF13429_consen  157 EQLGDPDKALRDYRKAL--ELDPDDPDA---RNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLW----DALAAAYLQL  227 (280)
T ss_dssp             HHCCHHHHHHHHHHHHH--HH-TT-HHH---HHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHC----HHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHH--HcCCCCHHH---HHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHH----HHHHHHhccc
Confidence            34446667777787544  666664443   33457788999999998888888777776666643    4578999999


Q ss_pred             CChHHHHHHHHHHh-cCC-CHHHHHHHHHH
Q 017641          332 HRPKEARIMYEKLQ-SHP-NALVSKRARQF  359 (368)
Q Consensus       332 GR~~EAiaLYkkL~-sHP-~~eVrKQAkrL  359 (368)
                      |+.++|+.+|+++. .|| ++.+...=..+
T Consensus       228 g~~~~Al~~~~~~~~~~p~d~~~~~~~a~~  257 (280)
T PF13429_consen  228 GRYEEALEYLEKALKLNPDDPLWLLAYADA  257 (280)
T ss_dssp             T-HHHHHHHHHHHHHHSTT-HHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccc
Confidence            99999999999986 477 56665443333

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=94.94  E-value=0.23  Score=51.73  Aligned_cols=70  Identities=16%  Similarity=0.097  Sum_probs=58.9

Q ss_pred             HHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCCHHHHHHHHHHhh
Q 017641          287 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHPNALVSKRARQFMF  361 (368)
Q Consensus       287 Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~~eVrKQAkrLly  361 (368)
                      |-.++-+|++.+|..+|++|+++-+  +   -++-+.++.+|+..||.++|++.|++- .-.|...+.-..++|.|
T Consensus       427 a~~~~~~g~~~~A~~~l~rAl~L~p--s---~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~~~~~~f  497 (517)
T PRK10153        427 AVQALVKGKTDEAYQAINKAIDLEM--S---WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYWIENLVF  497 (517)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCC--C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHHHHhccc
Confidence            5556678999999999999999885  3   367888999999999999999999875 46888777777777765

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=94.91  E-value=0.06  Score=39.46  Aligned_cols=41  Identities=15%  Similarity=0.152  Sum_probs=38.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 017641          321 ALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMF  361 (368)
Q Consensus       321 qLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAkrLly  361 (368)
                      .|.||-+|-.+|+.+.|+.+-+.+..+.+...+.+|+.||=
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~~~~~~q~~eA~~LL~   42 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIEEGDEAQRQEARALLA   42 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            57899999999999999999999999999999999999984

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=94.91  E-value=0.2  Score=42.77  Aligned_cols=82  Identities=16%  Similarity=0.209  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHH-----
Q 017641          255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQD-----  329 (368)
Q Consensus       255 ~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAyd-----  329 (368)
                      .+..+.+..|++-+.+..++.  ......+..|..++..|++.+|+.+|++|+..-+..    +.....++.+|-     
T Consensus        49 g~~~~A~~~~~~al~l~~~~~--~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~----~~~~~~la~i~~~~~~~  122 (168)
T CHL00033         49 GEYAEALQNYYEAMRLEIDPY--DRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL----PQALNNMAVICHYRGEQ  122 (168)
T ss_pred             CCHHHHHHHHHHHHhccccch--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHHHHHHHHHHHHhhHH
Confidence            345567777877766654443  223356778999999999999999999999874433    455667777777     


Q ss_pred             --hcCChHHHHHHHH
Q 017641          330 --SLHRPKEARIMYE  342 (368)
Q Consensus       330 --A~GR~~EAiaLYk  342 (368)
                        ..|+.++|+..|+
T Consensus       123 ~~~~g~~~~A~~~~~  137 (168)
T CHL00033        123 AIEQGDSEIAEAWFD  137 (168)
T ss_pred             HHHcccHHHHHHHHH
Confidence              7778775544443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=94.83  E-value=0.21  Score=45.72  Aligned_cols=59  Identities=19%  Similarity=0.070  Sum_probs=40.0

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      -+..|..++..|++.+|+..|++|+.+-|.++.    +...|+.+|-..|+.++|+.+++.+.
T Consensus       149 ~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~----~~~~l~~~li~~~~~~~~~~~l~~~~  207 (280)
T PF13429_consen  149 WLALAEIYEQLGDPDKALRDYRKALELDPDDPD----ARNALAWLLIDMGDYDEAREALKRLL  207 (280)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH----HHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHCCChHHHHHHHHHHH
Confidence            455677777788888888888888877777654    34445556667777777777776664

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=94.78  E-value=0.11  Score=48.62  Aligned_cols=62  Identities=15%  Similarity=0.123  Sum_probs=32.8

Q ss_pred             HHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      +..|..++..|+|.+|+.+|+.++..-......-..+...|+.+|...|+.++|+.+|+++.
T Consensus        73 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l  134 (389)
T PRK11788         73 LALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLV  134 (389)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            34455556666666666666655543211111123444555666666666666666666664

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.75  E-value=0.14  Score=51.12  Aligned_cols=63  Identities=21%  Similarity=0.283  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      ..+..+.+++.+++.|++.+|.+.|-.|++..+.+    +++.+-||.||-+.|+.++|.+++.+|-
T Consensus       133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~----~~~~~~la~~~l~~g~~e~A~~iL~~lP  195 (304)
T COG3118         133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPEN----SEAKLLLAECLLAAGDVEAAQAILAALP  195 (304)
T ss_pred             HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCccc----chHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence            66779999999999999999999999999999888    8899999999999999999999999984

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=94.73  E-value=0.21  Score=44.76  Aligned_cols=85  Identities=15%  Similarity=0.150  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcC-----------ChHHHHHHHHHHh-
Q 017641          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH-----------RPKEARIMYEKLQ-  345 (368)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G-----------R~~EAiaLYkkL~-  345 (368)
                      -.-+..|..|...|..|+|.+|+..|+..++.-|... .-..+..++++|+-...           ...+|+..++.|. 
T Consensus        40 ~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~-~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~  118 (203)
T PF13525_consen   40 YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP-KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIK  118 (203)
T ss_dssp             THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T-THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc-chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHH
Confidence            3345578999999999999999999999998777655 45789999999875543           3458999999996 


Q ss_pred             cCCCHHHHHHHHHHhhhh
Q 017641          346 SHPNALVSKRARQFMFSF  363 (368)
Q Consensus       346 sHP~~eVrKQAkrLlyiL  363 (368)
                      .+|+-.-...|++.|--+
T Consensus       119 ~yP~S~y~~~A~~~l~~l  136 (203)
T PF13525_consen  119 RYPNSEYAEEAKKRLAEL  136 (203)
T ss_dssp             H-TTSTTHHHHHHHHHHH
T ss_pred             HCcCchHHHHHHHHHHHH
Confidence            899999998888766543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=94.60  E-value=0.063  Score=37.35  Aligned_cols=32  Identities=22%  Similarity=0.260  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641          319 LAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (368)
Q Consensus       319 eaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (368)
                      ++.+.||.+|...|+.++|+.+|+++. .||+-
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~   34 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDD   34 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            467889999999999999999999995 68864

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=94.57  E-value=0.12  Score=52.97  Aligned_cols=79  Identities=20%  Similarity=0.248  Sum_probs=61.1

Q ss_pred             hhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch-----------HHHHHHHHHHHHhcCChHHHHHHHHH
Q 017641          275 KLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH-----------GLAALQWSICQDSLHRPKEARIMYEK  343 (368)
Q Consensus       275 ~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG-----------GeaqLwLAiAydA~GR~~EAiaLYkk  343 (368)
                      +..+.+...=..|..+|.+|+|..|+..|++|+..+....-.-           =-+-+.||+||--+++..+||..|.+
T Consensus       203 e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~k  282 (397)
T KOG0543|consen  203 ERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNK  282 (397)
T ss_pred             HHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHH
Confidence            4555555566679999999999999999999988887333221           23457899999999999999999999


Q ss_pred             HhcCCCHHHH
Q 017641          344 LQSHPNALVS  353 (368)
Q Consensus       344 L~sHP~~eVr  353 (368)
                      .-.|-..+++
T Consensus       283 vLe~~~~N~K  292 (397)
T KOG0543|consen  283 VLELDPNNVK  292 (397)
T ss_pred             HHhcCCCchh
Confidence            8666555554

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=94.49  E-value=0.29  Score=54.66  Aligned_cols=65  Identities=17%  Similarity=0.194  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (368)
                      ..+..|..++..|+|.+|+.+|++|++.-+...    .+.+.|+.+|...|+.++|+..|+++. .+|+-
T Consensus       353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~----~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~  418 (1157)
T PRK11447        353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDS----YAVLGLGDVAMARKDYAAAERYYQQALRMDPGN  418 (1157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            345678999999999999999999999876543    577789999999999999999999975 56663

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=94.45  E-value=0.31  Score=42.02  Aligned_cols=84  Identities=14%  Similarity=0.167  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCC--
Q 017641          256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR--  333 (368)
Q Consensus       256 rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR--  333 (368)
                      +..+.+.-|++-+.+.-++.  ......+..|..++..|+|.+|+.+|++|+..-+..    ..+...++.||...|+  
T Consensus        50 ~~~~A~~~~~~al~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~  123 (172)
T PRK02603         50 EYAEALENYEEALKLEEDPN--DRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ----PSALNNIAVIYHKRGEKA  123 (172)
T ss_pred             CHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCChH
Confidence            33444555554443332222  223456788999999999999999999999986654    3445667888887777  


Q ss_pred             ------------hHHHHHHHHHHh
Q 017641          334 ------------PKEARIMYEKLQ  345 (368)
Q Consensus       334 ------------~~EAiaLYkkL~  345 (368)
                                  .++|+.+|++..
T Consensus       124 ~a~~~~~~A~~~~~~A~~~~~~a~  147 (172)
T PRK02603        124 EEAGDQDEAEALFDKAAEYWKQAI  147 (172)
T ss_pred             hHhhCHHHHHHHHHHHHHHHHHHH
Confidence                        466777776664

>PRK15331 chaperone protein SicA; Provisional

Probab=94.34  E-value=0.11  Score=47.67  Aligned_cols=62  Identities=11%  Similarity=0.186  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHH
Q 017641          277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYE  342 (368)
Q Consensus       277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYk  342 (368)
                      .+.-+..|..|-.+|..|+|.+|..+|.-.+-.=.-+.+.    .|-|+.||+..+++++|+.+|-
T Consensus        34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y----~~GLaa~~Q~~k~y~~Ai~~Y~   95 (165)
T PRK15331         34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDY----TMGLAAVCQLKKQFQKACDLYA   95 (165)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            3555669999999999999999999888765544444432    4556666666666666666664

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.32  E-value=0.36  Score=47.15  Aligned_cols=80  Identities=18%  Similarity=0.178  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHHH
Q 017641          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQF  359 (368)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkrL  359 (368)
                      ...|=.|+..|.+|+|.+|-..|..+....+-... -=++-|-|++|+..+|++++|.+.|++|. ..|.-.--++|+.-
T Consensus       179 nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~K-ApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~  257 (262)
T COG1729         179 NAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPK-APDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVA  257 (262)
T ss_pred             hhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            34555699999999999999999999887665444 45778899999999999999999999995 79999998888876


Q ss_pred             hh
Q 017641          360 MF  361 (368)
Q Consensus       360 ly  361 (368)
                      +.
T Consensus       258 ~~  259 (262)
T COG1729         258 LK  259 (262)
T ss_pred             Hh
Confidence            53

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=94.23  E-value=0.26  Score=54.97  Aligned_cols=63  Identities=13%  Similarity=0.133  Sum_probs=54.5

Q ss_pred             HHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641          284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (368)
Q Consensus       284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (368)
                      ...|..++..|++.+|+..|++|+..-|..    ..+.+.|+.+|...|+.++|+++|+++. .+|+-
T Consensus       465 ~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~----~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~  528 (1157)
T PRK11447        465 AQQAEALENQGKWAQAAELQRQRLALDPGS----VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPND  528 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence            356888999999999999999999887664    3477899999999999999999999985 57854

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.16  E-value=0.11  Score=55.23  Aligned_cols=67  Identities=15%  Similarity=0.197  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHH-HHHHHHHhcCChHHHHHHHHHH-hcCC
Q 017641          277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAAL-QWSICQDSLHRPKEARIMYEKL-QSHP  348 (368)
Q Consensus       277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqL-wLAiAydA~GR~~EAiaLYkkL-~sHP  348 (368)
                      ...+.+.=..|..+|..|+|.+|+.+|..|+++++--.     |+. ..|-||+++|..++-|..|.+- .-.|
T Consensus       112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~ep-----iFYsNraAcY~~lgd~~~Vied~TkALEl~P  180 (606)
T KOG0547|consen  112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEP-----IFYSNRAACYESLGDWEKVIEDCTKALELNP  180 (606)
T ss_pred             HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCc-----hhhhhHHHHHHHHhhHHHHHHHHHHHhhcCc
Confidence            34455555679999999999999999999999999752     222 3788999999999999999764 3444

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.14  E-value=0.11  Score=32.94  Aligned_cols=31  Identities=23%  Similarity=0.340  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHhcCchhhhhHHHHHHHhhcc
Q 017641          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMV  311 (368)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~  311 (368)
                      +--+..|..+|..|+|.+|+.+|++|+.+-+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p   32 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence            3456778888888888888888888887655

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK12370 invasion protein regulator; Provisional

Probab=93.98  E-value=0.44  Score=49.00  Aligned_cols=83  Identities=14%  Similarity=0.039  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcC
Q 017641          253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH  332 (368)
Q Consensus       253 r~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G  332 (368)
                      ...+..+.++.|++-.  .++|..-.   ..+..|..++..|++.+|+.+|++|+.+-|....    +.++++.++-..|
T Consensus       350 ~~g~~~~A~~~~~~Al--~l~P~~~~---a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~----~~~~~~~~~~~~g  420 (553)
T PRK12370        350 IHSEYIVGSLLFKQAN--LLSPISAD---IKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA----AGITKLWITYYHT  420 (553)
T ss_pred             HccCHHHHHHHHHHHH--HhCCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh----hHHHHHHHHHhcc
Confidence            4456777888887655  45555433   2466688888888888888888888887766432    2223333333456


Q ss_pred             ChHHHHHHHHHH
Q 017641          333 RPKEARIMYEKL  344 (368)
Q Consensus       333 R~~EAiaLYkkL  344 (368)
                      +.++|+..|+++
T Consensus       421 ~~eeA~~~~~~~  432 (553)
T PRK12370        421 GIDDAIRLGDEL  432 (553)
T ss_pred             CHHHHHHHHHHH
Confidence            666666666665

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=93.80  E-value=0.27  Score=55.18  Aligned_cols=85  Identities=12%  Similarity=0.090  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCCh
Q 017641          255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP  334 (368)
Q Consensus       255 ~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~  334 (368)
                      .+..+.+..|++-.  .++|.    .+..+..|..++..|++.+|+.+|++|+.+-|.+.    .+...|+++|...|+.
T Consensus       590 Gr~~eAl~~~~~AL--~l~P~----~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~----~a~~nLG~aL~~~G~~  659 (987)
T PRK09782        590 GQPELALNDLTRSL--NIAPS----ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS----NYQAALGYALWDSGDI  659 (987)
T ss_pred             CCHHHHHHHHHHHH--HhCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCH
Confidence            34455555565443  33442    12234556666666666666666666666655443    3455555566666666


Q ss_pred             HHHHHHHHHHh-cCCC
Q 017641          335 KEARIMYEKLQ-SHPN  349 (368)
Q Consensus       335 ~EAiaLYkkL~-sHP~  349 (368)
                      ++|+.+|++.. .+|+
T Consensus       660 eeAi~~l~~AL~l~P~  675 (987)
T PRK09782        660 AQSREMLERAHKGLPD  675 (987)
T ss_pred             HHHHHHHHHHHHhCCC
Confidence            66666665543 3443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=93.63  E-value=0.48  Score=53.19  Aligned_cols=93  Identities=12%  Similarity=0.143  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCCh
Q 017641          255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP  334 (368)
Q Consensus       255 ~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~  334 (368)
                      .+..+.+..|++-.  .++|...   ...+..|..+.+.|++.+|+.+|++|++.-|..    ..+...|++||...|+.
T Consensus       623 G~~deA~~~l~~AL--~l~Pd~~---~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~----~~a~~nLA~al~~lGd~  693 (987)
T PRK09782        623 HNVPAAVSDLRAAL--ELEPNNS---NYQAALGYALWDSGDIAQSREMLERAHKGLPDD----PALIRQLAYVNQRLDDM  693 (987)
T ss_pred             CCHHHHHHHHHHHH--HhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCH
Confidence            34555666666544  4455543   236677899999999999999999999987744    47889999999999999


Q ss_pred             HHHHHHHHHHh-cCCCH-HHHHHH
Q 017641          335 KEARIMYEKLQ-SHPNA-LVSKRA  356 (368)
Q Consensus       335 ~EAiaLYkkL~-sHP~~-eVrKQA  356 (368)
                      ++|++.|++.. -.|+- .|.-+.
T Consensus       694 ~eA~~~l~~Al~l~P~~a~i~~~~  717 (987)
T PRK09782        694 AATQHYARLVIDDIDNQALITPLT  717 (987)
T ss_pred             HHHHHHHHHHHhcCCCCchhhhhh
Confidence            99999999985 56654 555333

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=93.33  E-value=0.29  Score=45.40  Aligned_cols=59  Identities=14%  Similarity=-0.022  Sum_probs=51.1

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      ....|..++..|+|.+|+..|++++++-+..    ..+...++.+|...||.++|+.+|++..
T Consensus       117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~----~~~~~~la~i~~~~g~~~eA~~~l~~~l  175 (355)
T cd05804         117 LGMLAFGLEEAGQYDRAEEAARRALELNPDD----AWAVHAVAHVLEMQGRFKEGIAFMESWR  175 (355)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHhhh
Confidence            4456888999999999999999999988776    3456678889999999999999999875

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=93.24  E-value=0.2  Score=46.96  Aligned_cols=88  Identities=18%  Similarity=0.132  Sum_probs=64.0

Q ss_pred             HHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCc--cchHHHHHHHHHHHHhc-CC
Q 017641          257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSL-HR  333 (368)
Q Consensus       257 tke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~-GR  333 (368)
                      ..+....|.+-.-+.........+-..|..+-..+..+++.+|+.+|++|++..-...  ...+.+...+|..|+.. |+
T Consensus        51 ~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d  130 (282)
T PF14938_consen   51 WEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGD  130 (282)
T ss_dssp             CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--
T ss_pred             cchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCC
Confidence            3455566655544443334455666778888888888899999999999998765444  44477888899999999 99


Q ss_pred             hHHHHHHHHHH
Q 017641          334 PKEARIMYEKL  344 (368)
Q Consensus       334 ~~EAiaLYkkL  344 (368)
                      .++|+..|++-
T Consensus       131 ~e~Ai~~Y~~A  141 (282)
T PF14938_consen  131 YEKAIEYYQKA  141 (282)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999876

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=92.99  E-value=0.45  Score=46.57  Aligned_cols=56  Identities=23%  Similarity=0.196  Sum_probs=50.6

Q ss_pred             HHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      .|+.++..|+|.+|+..|-+|..+-+..    +++-+-|++|||-+||+++|..-|.|..
T Consensus       106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d----~~~~~~lgaaldq~Gr~~~Ar~ay~qAl  161 (257)
T COG5010         106 QGKNQIRNGNFGEAVSVLRKAARLAPTD----WEAWNLLGAALDQLGRFDEARRAYRQAL  161 (257)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhccCCCC----hhhhhHHHHHHHHccChhHHHHHHHHHH
Confidence            8999999999999999999999887776    4566778999999999999999999874

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=92.96  E-value=0.46  Score=50.85  Aligned_cols=65  Identities=11%  Similarity=-0.018  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (368)
                      -.+-.+..++..|++.+|+..|++++...|.+.    .+.+.+|++|...|+.++|+.+|++.. -+|+-
T Consensus       361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~----~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~  426 (765)
T PRK10049        361 GQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ----GLRIDYASVLQARGWPRAAENELKKAEVLEPRN  426 (765)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence            345678888888999999999999888877774    577888888888888888888888885 46763

>PRK11189 lipoprotein NlpI; Provisional

Probab=92.95  E-value=0.98  Score=42.75  Aligned_cols=69  Identities=10%  Similarity=-0.074  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 017641          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL  351 (368)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e  351 (368)
                      .++--+..|..+...|++.+|+..|++|+++-+..    ..+...++.+|...|+.++|+..|++.. ..|+-.
T Consensus        63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~  132 (296)
T PRK11189         63 RAQLHYERGVLYDSLGLRALARNDFSQALALRPDM----ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN  132 (296)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            34557888999999999999999999999986654    5788899999999999999999999985 466543

>TIGR00540 hemY_coli hemY protein

Probab=92.79  E-value=0.38  Score=47.29  Aligned_cols=60  Identities=18%  Similarity=0.147  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHhcCchhhhhHHHHH--HHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641          280 CEKALKDGDSLMDSGKLKEALPFYEK--VMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (368)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEk--A~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (368)
                      |.-.+..|..++..|+|.+|.++||+  +++.-+     ..++...|+.+|+..|++++|..+|++-
T Consensus       335 ~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-----~~~~~~~La~ll~~~g~~~~A~~~~~~~  396 (409)
T TIGR00540       335 CCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-----DANDLAMAADAFDQAGDKAEAAAMRQDS  396 (409)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            55677889999999999999999995  554433     3456678999999999999999999963

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=92.65  E-value=0.66  Score=49.06  Aligned_cols=87  Identities=9%  Similarity=0.043  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhh----hhHHHHHHHhhcccCccchHHHHHHHHHHHHhc
Q 017641          256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKE----ALPFYEKVMNKMVFKSELHGLAALQWSICQDSL  331 (368)
Q Consensus       256 rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~----AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~  331 (368)
                      +..+.+..|++-..  .+|..   ....+..|..++..|+|.+    |+.+|++|+..-|..    ..+.+.|+.+|...
T Consensus       227 ~~~eA~~~~~~al~--~~p~~---~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~----~~a~~~lg~~l~~~  297 (656)
T PRK15174        227 KYQEAIQTGESALA--RGLDG---AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN----VRIVTLYADALIRT  297 (656)
T ss_pred             CHHHHHHHHHHHHh--cCCCC---HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHC
Confidence            34445555554432  33432   2335667999999999996    899999999887643    47888999999999


Q ss_pred             CChHHHHHHHHHHh-cCCCHH
Q 017641          332 HRPKEARIMYEKLQ-SHPNAL  351 (368)
Q Consensus       332 GR~~EAiaLYkkL~-sHP~~e  351 (368)
                      |+.++|+..|+++. .+|+..
T Consensus       298 g~~~eA~~~l~~al~l~P~~~  318 (656)
T PRK15174        298 GQNEKAIPLLQQSLATHPDLP  318 (656)
T ss_pred             CCHHHHHHHHHHHHHhCCCCH
Confidence            99999999999985 677743

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=92.43  E-value=0.64  Score=45.37  Aligned_cols=75  Identities=20%  Similarity=0.261  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCcc-c-----h--------------------HHHHHHH------
Q 017641          277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE-L-----H--------------------GLAALQW------  324 (368)
Q Consensus       277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~-L-----G--------------------GeaqLwL------  324 (368)
                      ++++..+=.+|..+|..|.|.+|...|..|++.|+.-+. +     +                    --++||-      
T Consensus        92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl  171 (271)
T KOG4234|consen   92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL  171 (271)
T ss_pred             HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence            456667778899999999999999999999999997653 1     1                    1233343      


Q ss_pred             ---HHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 017641          325 ---SICQDSLHRPKEARIMYEKLQ-SHPNAL  351 (368)
Q Consensus       325 ---AiAydA~GR~~EAiaLYkkL~-sHP~~e  351 (368)
                         |-+|+.+-..++|+.=|++|. +.|...
T Consensus       172 ~RRAeayek~ek~eealeDyKki~E~dPs~~  202 (271)
T KOG4234|consen  172 ERRAEAYEKMEKYEEALEDYKKILESDPSRR  202 (271)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhCcchH
Confidence               778888999999999999996 777654

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=92.30  E-value=0.68  Score=45.26  Aligned_cols=69  Identities=20%  Similarity=0.133  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      .+..+..++.|..+|++|++..|...||+|++.=+- +.   .+.+-+|..|+..|..+-|...|++-. .||+
T Consensus        32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~---~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~  101 (250)
T COG3063          32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YY---LAHLVRAHYYQKLGENDLADESYRKALSLAPN  101 (250)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cH---HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC
Confidence            456677899999999999999999999999986543 33   356667889999999999999999874 5664

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.16  E-value=0.31  Score=31.43  Aligned_cols=31  Identities=23%  Similarity=0.432  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHhcCchhhhhHHHHHHHhhcc
Q 017641          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMV  311 (368)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~  311 (368)
                      +.-+..|..++..|+|.+|+.+|++|+++-+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p   32 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence            3456788888899999999999998887654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=92.15  E-value=0.74  Score=44.98  Aligned_cols=66  Identities=14%  Similarity=0.151  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      -+.+.|+.|...++.|.|.+|+.+||++...- +.|++.=.++|-|+-||=-.+..++|++.-..-.
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi   98 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFI   98 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            45679999999999999999999999987544 4577779999999999999999999999887764

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=91.89  E-value=0.85  Score=48.11  Aligned_cols=60  Identities=15%  Similarity=0.035  Sum_probs=50.0

Q ss_pred             HHHHHHHhcCchhhhhHHHHHHHhhcc----cCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641          285 KDGDSLMDSGKLKEALPFYEKVMNKMV----FKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (368)
Q Consensus       285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~----~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (368)
                      ..|..++..|+|.+|+..|++|++..-    ....-=+.+-..||.+|-..|+++||...|+.-
T Consensus       246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A  309 (508)
T KOG1840|consen  246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERA  309 (508)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence            479999999999999999999987654    333344889999999999999999987777653

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=91.82  E-value=1  Score=47.54  Aligned_cols=67  Identities=18%  Similarity=0.137  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhccc-CccchHHHHHH---HHHHHHhcCChHHHHHHHHHH
Q 017641          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF-KSELHGLAALQ---WSICQDSLHRPKEARIMYEKL  344 (368)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~-~S~LGGeaqLw---LAiAydA~GR~~EAiaLYkkL  344 (368)
                      ..+......+..+..+|+|++|-++++.||.+... -...+++|...   ++..+++.+++++|+.+|++.
T Consensus       281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a  351 (508)
T KOG1840|consen  281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA  351 (508)
T ss_pred             HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            33444566689999999999999999999888766 23567777765   678899999999999999865

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=91.81  E-value=0.88  Score=48.78  Aligned_cols=75  Identities=9%  Similarity=-0.000  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHHHh
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQFM  360 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkrLl  360 (368)
                      ..+..|..++.+|++.+|+..|++|+.+-|-+..    +.+.+++++...|+.++|.++++++. .+|.-..-+.-++.+
T Consensus       395 l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~----l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~  470 (765)
T PRK10049        395 LRIDYASVLQARGWPRAAENELKKAEVLEPRNIN----LEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARAR  470 (765)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH----HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            4677799999999999999999999998876665    66778999999999999999999996 677655544444443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=90.97  E-value=0.52  Score=49.42  Aligned_cols=77  Identities=17%  Similarity=0.208  Sum_probs=55.8

Q ss_pred             hcCCcCChhhH---------HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHH
Q 017641          267 SVGLNVDPKLK---------SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEA  337 (368)
Q Consensus       267 ~~Gl~Vd~~~~---------~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EA  337 (368)
                      .++|++||.-.         ..|+..=..|..+|..|.|+.|.+.|-.|+..-|-+..--...-+..|.++-.+||..||
T Consensus       227 ~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~ea  306 (486)
T KOG0550|consen  227 QQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREA  306 (486)
T ss_pred             hhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhh
Confidence            46788888753         445556667999999999999999999999887776665555555556666666666666


Q ss_pred             HHHHHH
Q 017641          338 RIMYEK  343 (368)
Q Consensus       338 iaLYkk  343 (368)
                      |.-|..
T Consensus       307 isdc~~  312 (486)
T KOG0550|consen  307 ISDCNE  312 (486)
T ss_pred             hhhhhh
Confidence            655543

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=90.63  E-value=0.41  Score=30.03  Aligned_cols=31  Identities=10%  Similarity=0.296  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhccc
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVF  312 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~  312 (368)
                      ..|..|..++..|++.+|+..|+.+++.-|-
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            5789999999999999999999999987653

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=90.62  E-value=1.8  Score=40.51  Aligned_cols=87  Identities=15%  Similarity=0.071  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhccc--CccchHHHHHHHHHHHHhcC
Q 017641          255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF--KSELHGLAALQWSICQDSLH  332 (368)
Q Consensus       255 ~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~--~S~LGGeaqLwLAiAydA~G  332 (368)
                      .-+...+..|++.-.      ..-...-.++.|..+|..|+|..|+.+|+.+......  =..|-..+-..|.-|+-.+|
T Consensus       159 ~lL~~A~~~f~~~~~------~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~  232 (247)
T PF11817_consen  159 ELLEKAYEQFKKYGQ------NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG  232 (247)
T ss_pred             HHHHHHHHHHHHhcc------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence            334445555553332      3333445778999999999999999999999322221  14677888889999999999


Q ss_pred             ChHHHHHHHHHHhcC
Q 017641          333 RPKEARIMYEKLQSH  347 (368)
Q Consensus       333 R~~EAiaLYkkL~sH  347 (368)
                      +.++.+.+|=.|-+|
T Consensus       233 ~~~~~l~~~leLls~  247 (247)
T PF11817_consen  233 DVEDYLTTSLELLSR  247 (247)
T ss_pred             CHHHHHHHHHHHhcC
Confidence            999999999888765

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=90.30  E-value=1.4  Score=48.87  Aligned_cols=71  Identities=13%  Similarity=0.140  Sum_probs=53.2

Q ss_pred             HHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHHHhhhhh
Q 017641          287 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQFMFSFQ  364 (368)
Q Consensus       287 Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkrLlyiLE  364 (368)
                      |..+...|+|..|++.|+++++.-|.+..+-    +-|+++|-..++.++|+..++++. ..|.  ..-. ..+.|+..
T Consensus       109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l----~gLa~~y~~~~q~~eAl~~l~~l~~~dp~--~~~~-l~layL~~  180 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLI----SGMIMTQADAGRGGVVLKQATELAERDPT--VQNY-MTLSYLNR  180 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH----HHHHHHHhhcCCHHHHHHHHHHhcccCcc--hHHH-HHHHHHHH
Confidence            6677888999999999999998888885333    456788888899999999999986 4565  3332 55566663

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=89.99  E-value=0.6  Score=29.85  Aligned_cols=31  Identities=26%  Similarity=0.350  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHhcCchhhhhHHHHHHHhhcc
Q 017641          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMV  311 (368)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~  311 (368)
                      +.-+..|+.++..|++.+|+.+|++|++.-+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            4456677888888888888888888776543

...

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=89.68  E-value=0.89  Score=44.81  Aligned_cols=58  Identities=3%  Similarity=-0.212  Sum_probs=46.0

Q ss_pred             HHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 017641          286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSH  347 (368)
Q Consensus       286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sH  347 (368)
                      .++.++..|+|.+|+..|+++.+.-|.+.    .+...++.+|-..|+.++|+.++.+|..+
T Consensus       159 ~a~l~l~~g~~~~Al~~l~~~~~~~P~~~----~al~ll~~~~~~~gdw~~a~~~l~~l~k~  216 (398)
T PRK10747        159 RVRIQLARNENHAARHGVDKLLEVAPRHP----EVLRLAEQAYIRTGAWSSLLDILPSMAKA  216 (398)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHc
Confidence            37777888888888888888877776654    56677788888889999999999988754

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=89.58  E-value=2.2  Score=45.58  Aligned_cols=73  Identities=19%  Similarity=0.236  Sum_probs=58.4

Q ss_pred             cCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          271 NVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       271 ~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      .++|++   +++.-..|..+|..|+|+.||.+|.+|+..-|-.-+    .--+.|.||-.+|...+|++=|+++. -||+
T Consensus       352 ~~~pe~---A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~----lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~  424 (539)
T KOG0548|consen  352 YINPEK---AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR----LYSNRAACYLKLGEYPEALKDAKKCIELDPN  424 (539)
T ss_pred             hhChhH---HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH----HHHHHHHHHHHHhhHHHHHHHHHHHHhcCch
Confidence            456666   444555599999999999999999999888755433    44567899999999999999999985 5776


Q ss_pred             H
Q 017641          350 A  350 (368)
Q Consensus       350 ~  350 (368)
                      .
T Consensus       425 ~  425 (539)
T KOG0548|consen  425 F  425 (539)
T ss_pred             H
Confidence            4

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=89.48  E-value=2.1  Score=38.60  Aligned_cols=91  Identities=18%  Similarity=0.119  Sum_probs=63.9

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCCcCChhhHHHHH-HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHH
Q 017641          246 TAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECE-KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQW  324 (368)
Q Consensus       246 teEEkaar~~rtke~LaaYrk~~Gl~Vd~~~~~e~e-ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwL  324 (368)
                      +.++.+++-+++...|..|+++.       .+++++ ...+.|.-+...|++..|+..|+.+.+.+   +-.|-.+.|++
T Consensus         8 ~~~~~~~~~~~Le~elk~~~~n~-------~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~---~~~~~~id~~l   77 (177)
T PF10602_consen    8 TKAKNAEELEKLEAELKDAKSNL-------GKESIRMALEDLADHYCKIGDLEEALKAYSRARDYC---TSPGHKIDMCL   77 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc-------chHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc---CCHHHHHHHHH
Confidence            44455777888888999998776       444554 45567999999999999999999999886   45566666665


Q ss_pred             HHHHHh--cCChHHHHHHHHHHhc
Q 017641          325 SICQDS--LHRPKEARIMYEKLQS  346 (368)
Q Consensus       325 AiAydA--~GR~~EAiaLYkkL~s  346 (368)
                      .++.=+  .+..........+..+
T Consensus        78 ~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   78 NVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHH
Confidence            554333  3455555555555543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=89.24  E-value=1.8  Score=45.11  Aligned_cols=95  Identities=21%  Similarity=0.264  Sum_probs=69.4

Q ss_pred             hcCCcCChhh---HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch---------------HHHHHHHHHHH
Q 017641          267 SVGLNVDPKL---KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---------------GLAALQWSICQ  328 (368)
Q Consensus       267 ~~Gl~Vd~~~---~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG---------------GeaqLwLAiAy  328 (368)
                      ++-|.||+=.   +...-+.-+.|..+|.+|+|.+|+..|-++|+.-+-+--++               .|+-..+|++|
T Consensus        81 ~~dL~vd~I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL  160 (536)
T KOG4648|consen   81 KQDLPVDPIAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL  160 (536)
T ss_pred             hccCCccHHHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh
Confidence            4677888754   33333445679999999999999999999999988776666               34444455544


Q ss_pred             ---------------HhcCChHHHHHHHHHH-hcCC-CHHHHHHHHHHhh
Q 017641          329 ---------------DSLHRPKEARIMYEKL-QSHP-NALVSKRARQFMF  361 (368)
Q Consensus       329 ---------------dA~GR~~EAiaLYkkL-~sHP-~~eVrKQAkrLly  361 (368)
                                     .++|...||..=|+.. .-.| +.+++|+..+|.-
T Consensus       161 d~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S  210 (536)
T KOG4648|consen  161 DKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS  210 (536)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence                           4678888999888876 3344 5788888877653

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=88.89  E-value=0.94  Score=46.78  Aligned_cols=61  Identities=15%  Similarity=0.201  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHH-HHHHHHHh
Q 017641          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEA-RIMYEKLQ  345 (368)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EA-iaLYkkL~  345 (368)
                      ...|+.|+.++.-|.|+.|...|++|+++=|.|    =.|+.+|+.|-+-+-++++. ..||+++=
T Consensus       292 KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N----ka~~~el~~l~~k~~~~~~kekk~y~~mF  353 (397)
T KOG0543|consen  292 KALYRRGQALLALGEYDLARDDFQKALKLEPSN----KAARAELIKLKQKIREYEEKEKKMYANMF  353 (397)
T ss_pred             hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            346778888888888999999999888888887    46778888888888887776 78888774

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=88.70  E-value=1.6  Score=35.02  Aligned_cols=57  Identities=18%  Similarity=0.133  Sum_probs=48.2

Q ss_pred             HHHhcCchhhhhHHHHHHHhhcccCccch-----HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          289 SLMDSGKLKEALPFYEKVMNKMVFKSELH-----GLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       289 ~AmerGkYr~AV~~lEkA~~~v~~~S~LG-----GeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      .+..+|+|.+|++.|....+.........     ..+.|.+|.++-..|+.++|+..++...
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi   68 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI   68 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            46789999999999999988876666544     5778899999999999999999998763

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.63  E-value=1.7  Score=42.55  Aligned_cols=66  Identities=15%  Similarity=0.116  Sum_probs=59.6

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      .|+.+..++..|+|..|...|..=++.-|. |.+-..+..||.-||=+.|+.++|...|-.+. .||.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~-s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~  210 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPN-STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK  210 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC
Confidence            899999999999999999999998888765 55678999999999999999999999999995 5664

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=88.44  E-value=1.4  Score=42.75  Aligned_cols=66  Identities=20%  Similarity=0.325  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHH--HHHHHHhcCChHHHHHHHHHH-hcCCC
Q 017641          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQ--WSICQDSLHRPKEARIMYEKL-QSHPN  349 (368)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLw--LAiAydA~GR~~EAiaLYkkL-~sHP~  349 (368)
                      ..+..|..|..+-+-|+|.+|+++|++++.     ..+.|+.+|-  +|.|+=++++..+|+...++| ..||.
T Consensus        88 Tvqnr~rLa~al~elGr~~EA~~hy~qals-----G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa  156 (251)
T COG4700          88 TVQNRYRLANALAELGRYHEAVPHYQQALS-----GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA  156 (251)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-----cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence            456788999999999999999999999875     3445555544  567778889999999999988 45654

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=88.37  E-value=4.8  Score=33.40  Aligned_cols=75  Identities=12%  Similarity=0.009  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch------------------HHHHHHHHHHHHhcCChHHHHH
Q 017641          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH------------------GLAALQWSICQDSLHRPKEARI  339 (368)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG------------------GeaqLwLAiAydA~GR~~EAia  339 (368)
                      .+++..+..|..+...|.-..+++.|++|+.+....---+                  =.+...++.++...|+.++|+.
T Consensus         4 ~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~   83 (146)
T PF03704_consen    4 DRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALR   83 (146)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence            4677788889999999999999999999998775432111                  2344557778889999999999


Q ss_pred             HHHHHh-cCCCHHH
Q 017641          340 MYEKLQ-SHPNALV  352 (368)
Q Consensus       340 LYkkL~-sHP~~eV  352 (368)
                      +|+++. .+|.-+-
T Consensus        84 ~~~~~l~~dP~~E~   97 (146)
T PF03704_consen   84 LLQRALALDPYDEE   97 (146)
T ss_dssp             HHHHHHHHSTT-HH
T ss_pred             HHHHHHhcCCCCHH
Confidence            999996 7998764

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=88.27  E-value=1.1  Score=45.97  Aligned_cols=54  Identities=19%  Similarity=0.252  Sum_probs=45.6

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHH
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARI  339 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAia  339 (368)
                      -+-.|+.++..|.|..||+.||.|.+.   +-.+=|||.--|..||..+|+.++.+.
T Consensus       217 si~lG~v~~~~g~y~~AV~~~e~v~eQ---n~~yl~evl~~L~~~Y~~lg~~~~~~~  270 (389)
T COG2956         217 SIILGRVELAKGDYQKAVEALERVLEQ---NPEYLSEVLEMLYECYAQLGKPAEGLN  270 (389)
T ss_pred             hhhhhHHHHhccchHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            345699999999999999999998764   567889999999999999999666543

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=88.10  E-value=0.71  Score=31.07  Aligned_cols=24  Identities=21%  Similarity=0.494  Sum_probs=15.8

Q ss_pred             HHHHHHHhcCchhhhhHHHHHHHh
Q 017641          285 KDGDSLMDSGKLKEALPFYEKVMN  308 (368)
Q Consensus       285 ~~Gk~AmerGkYr~AV~~lEkA~~  308 (368)
                      ..|..++..|+|.+|+++||+|+.
T Consensus         4 ~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    4 NLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Confidence            456677777777777777777553

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=87.81  E-value=1.5  Score=31.73  Aligned_cols=55  Identities=20%  Similarity=0.305  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcC-chhhhhHHHHHHHhhc
Q 017641          251 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSG-KLKEALPFYEKVMNKM  310 (368)
Q Consensus       251 aar~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerG-kYr~AV~~lEkA~~~v  310 (368)
                      ..+..+..+.+..|.+-+  .+||..-   .-.+..|..++..| +|.+|+..|++|+++-
T Consensus        13 ~~~~~~~~~A~~~~~~ai--~~~p~~~---~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~   68 (69)
T PF13414_consen   13 YFQQGDYEEAIEYFEKAI--ELDPNNA---EAYYNLGLAYMKLGKDYEEAIEDFEKALKLD   68 (69)
T ss_dssp             HHHTTHHHHHHHHHHHHH--HHSTTHH---HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred             HHHcCCHHHHHHHHHHHH--HcCCCCH---HHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence            445667888888887655  6677643   35888999999999 8999999999998864

...

>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function

Probab=87.51  E-value=1.3  Score=34.21  Aligned_cols=60  Identities=25%  Similarity=0.345  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcc--cCccchHHHHHHHHHHHHhcCChHHHHHHH
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMV--FKSELHGLAALQWSICQDSLHRPKEARIMY  341 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~--~~S~LGGeaqLwLAiAydA~GR~~EAiaLY  341 (368)
                      ++|..|..+|+.|+|-+|=+.||.+-...+  .+.-+-|.||+--|+.+-..|+..-|..|+
T Consensus         1 ~~~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~   62 (62)
T PF03745_consen    1 EALEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL   62 (62)
T ss_dssp             -HHHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence            478899999999999999999999865544  566788999999999898999998888775

The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=87.28  E-value=2.8  Score=38.22  Aligned_cols=77  Identities=12%  Similarity=0.087  Sum_probs=61.5

Q ss_pred             HHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cC----CCHHHHHHHHH
Q 017641          284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SH----PNALVSKRARQ  358 (368)
Q Consensus       284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sH----P~~eVrKQAkr  358 (368)
                      |-.|--.=..|+|.+|+..|+.|..+-+-    .-+.-..++.||=++|+.++|+.-++.-. .+    -+..|+++|+.
T Consensus        73 ~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d----dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~  148 (157)
T PRK15363         73 FRLGECCQAQKHWGEAIYAYGRAAQIKID----APQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEK  148 (157)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcCCC----CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHH
Confidence            33466666789999999999999887653    35677889999999999999998888664 33    47789999999


Q ss_pred             Hhhhhh
Q 017641          359 FMFSFQ  364 (368)
Q Consensus       359 LlyiLE  364 (368)
                      +|-.|.
T Consensus       149 ~L~~l~  154 (157)
T PRK15363        149 MLQQLS  154 (157)
T ss_pred             HHHHhh
Confidence            986653

>PRK14574 hmsH outer membrane protein; Provisional

Probab=87.05  E-value=2.6  Score=46.67  Aligned_cols=94  Identities=12%  Similarity=0.069  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHh
Q 017641          251 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS  330 (368)
Q Consensus       251 aar~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA  330 (368)
                      ..|.-++.+.+..+++-.  ..+|..-..   .++....++..|++.+|+.++|+++    ....+--...+-+|.+|-.
T Consensus        44 ~~r~Gd~~~Al~~L~qaL--~~~P~~~~a---v~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~  114 (822)
T PRK14574         44 RARAGDTAPVLDYLQEES--KAGPLQSGQ---VDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRN  114 (822)
T ss_pred             HHhCCCHHHHHHHHHHHH--hhCccchhh---HHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHH
Confidence            334444455555555443  344443211   1144566677799999999999988    2233444556667889999


Q ss_pred             cCChHHHHHHHHHHh-cCCC-HHHH
Q 017641          331 LHRPKEARIMYEKLQ-SHPN-ALVS  353 (368)
Q Consensus       331 ~GR~~EAiaLYkkL~-sHP~-~eVr  353 (368)
                      .|+.++|+.+|+++. .+|+ +++.
T Consensus       115 ~gdyd~Aiely~kaL~~dP~n~~~l  139 (822)
T PRK14574        115 EKRWDQALALWQSSLKKDPTNPDLI  139 (822)
T ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHH
Confidence            999999999999995 5665 3443

>TIGR00540 hemY_coli hemY protein

Probab=86.84  E-value=5.5  Score=39.33  Aligned_cols=66  Identities=17%  Similarity=0.100  Sum_probs=34.9

Q ss_pred             HHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC-CHHHHH
Q 017641          286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP-NALVSK  354 (368)
Q Consensus       286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP-~~eVrK  354 (368)
                      .++.+..+|++..|..+|+++.+..+-. .+  .+.+.++..+-..|+.++|++..+.+. .+| |+.+.+
T Consensus       124 aA~aa~~~g~~~~A~~~l~~a~~~~p~~-~l--~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~  191 (409)
T TIGR00540       124 AAEAAQQRGDEARANQHLEEAAELAGND-NI--LVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLK  191 (409)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCcC-ch--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            3556666666666666666665433221 11  123334555555666666666666663 455 333433

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=86.42  E-value=1.4  Score=28.56  Aligned_cols=24  Identities=21%  Similarity=0.409  Sum_probs=12.2

Q ss_pred             HHHHHHHhcCchhhhhHHHHHHHh
Q 017641          285 KDGDSLMDSGKLKEALPFYEKVMN  308 (368)
Q Consensus       285 ~~Gk~AmerGkYr~AV~~lEkA~~  308 (368)
                      ..|..++.+|+|.+|+.++++|++
T Consensus         7 ~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    7 NLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhcchhhHHHHHHHH
Confidence            345555555555555555555443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=86.37  E-value=3.5  Score=29.62  Aligned_cols=55  Identities=24%  Similarity=0.384  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhccc
Q 017641          253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF  312 (368)
Q Consensus       253 r~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~  312 (368)
                      +..+..+.++.|+.=+  ..+|.   ..+..+..|..++..|+|.+|+.+|+.+++.-|.
T Consensus         9 ~~g~~~~A~~~~~~~l--~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~   63 (65)
T PF13432_consen    9 QQGDYDEAIAAFEQAL--KQDPD---NPEAWYLLGRILYQQGRYDEALAYYERALELDPD   63 (65)
T ss_dssp             HCTHHHHHHHHHHHHH--CCSTT---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HcCCHHHHHHHHHHHH--HHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            3345666666676444  33455   4455888999999999999999999999987654

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=86.09  E-value=2.1  Score=48.14  Aligned_cols=66  Identities=26%  Similarity=0.360  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      .+.+.--++..+.+|+.|+|.+|+.+|-.++..-.-+.   +-+-+-+|-||-.+|+.++||.-|++..
T Consensus       411 ~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~---~~vw~~~a~c~~~l~e~e~A~e~y~kvl  476 (895)
T KOG2076|consen  411 SDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN---AFVWYKLARCYMELGEYEEAIEFYEKVL  476 (895)
T ss_pred             hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc---hhhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            34555667778888888888888888877765544444   3333336778888888888888887763

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=85.06  E-value=2.3  Score=31.64  Aligned_cols=35  Identities=20%  Similarity=0.373  Sum_probs=30.2

Q ss_pred             hHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhc
Q 017641          276 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM  310 (368)
Q Consensus       276 ~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v  310 (368)
                      -...+...+..|......|+|.+|+++|++|++..
T Consensus        42 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen   42 HPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            34557778899999999999999999999998753

...

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=84.79  E-value=4  Score=37.09  Aligned_cols=95  Identities=18%  Similarity=0.288  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCC--cCChhh---H----HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch
Q 017641          247 AEARAAKEERTRQLLAAYKKSVGL--NVDPKL---K----SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH  317 (368)
Q Consensus       247 eEEkaar~~rtke~LaaYrk~~Gl--~Vd~~~---~----~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG  317 (368)
                      +-||.-.+.-..+.-+.||+-|-+  +|-++.   .    .-|-..|  ...+-.-|+|.+++..-+.|+-..++..+|+
T Consensus        15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~L--s~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~   92 (144)
T PF12968_consen   15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGL--SGALAGLGRYDECLQSADRALRYFNRRGELH   92 (144)
T ss_dssp             HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHH--HHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHH--HHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence            345555555666677777776532  233321   1    2233332  3456788999999999999999999999998


Q ss_pred             -HHHHHH------HHHHHHhcCChHHHHHHHHH
Q 017641          318 -GLAALQ------WSICQDSLHRPKEARIMYEK  343 (368)
Q Consensus       318 -GeaqLw------LAiAydA~GR~~EAiaLYkk  343 (368)
                       -+-.+|      -|.|++.+||.+||+.-|+.
T Consensus        93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~  125 (144)
T PF12968_consen   93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRM  125 (144)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence             233344      56889999999999988875

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=84.67  E-value=1.6  Score=29.38  Aligned_cols=22  Identities=14%  Similarity=-0.026  Sum_probs=19.5

Q ss_pred             HHHHHHHHhcCChHHHHHHHHH
Q 017641          322 LQWSICQDSLHRPKEARIMYEK  343 (368)
Q Consensus       322 LwLAiAydA~GR~~EAiaLYkk  343 (368)
                      ..|+.+|...|++++||.+|++
T Consensus         3 ~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    3 NNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHH
Confidence            4689999999999999999998

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=84.33  E-value=2.6  Score=47.48  Aligned_cols=85  Identities=20%  Similarity=0.279  Sum_probs=60.8

Q ss_pred             HHHHHHHHHhhcCCcCChhhHHHHHHHHH-----------HHHHHHhcCchhhhhHHHHHHHhhcccCccch--------
Q 017641          257 TRQLLAAYKKSVGLNVDPKLKSECEKALK-----------DGDSLMDSGKLKEALPFYEKVMNKMVFKSELH--------  317 (368)
Q Consensus       257 tke~LaaYrk~~Gl~Vd~~~~~e~eea~~-----------~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG--------  317 (368)
                      ..+++..|+..-   --.+..+.|+++++           .|-.++.+|+|.+|.-.  .+++..+.++...        
T Consensus        34 ~~~Li~~~~~~~---~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~  108 (906)
T PRK14720         34 LDDLIDAYKSEN---LTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDK  108 (906)
T ss_pred             HHHHHHHHHhcC---CHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHH
Confidence            445666663221   12334555555544           48889999999998877  8888888887221        


Q ss_pred             -------HHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 017641          318 -------GLAALQWSICQDSLHRPKEARIMYEKLQS  346 (368)
Q Consensus       318 -------GeaqLwLAiAydA~GR~~EAiaLYkkL~s  346 (368)
                             =.+-.-||+|||.+|+.++|+++|+++..
T Consensus       109 i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~  144 (906)
T PRK14720        109 ILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK  144 (906)
T ss_pred             HHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence                   14667799999999999999999999963

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=84.03  E-value=1.6  Score=30.27  Aligned_cols=34  Identities=15%  Similarity=0.024  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCcc
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE  315 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~  315 (368)
                      ..+..|..++..|++.+|+..|+++++..|.+..
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~   36 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPE   36 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence            3567799999999999999999999999887753

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=83.91  E-value=1.8  Score=48.59  Aligned_cols=59  Identities=24%  Similarity=0.210  Sum_probs=52.3

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      -|..|.-+|+.|.|.+|+++||+|+...|.+.    .+.+-||..|+-.|++++|...-.++.
T Consensus       452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~----D~Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  452 WYKLARCYMELGEYEEAIEFYEKVLILAPDNL----DARITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcCCCch----hhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence            46779999999999999999999999988765    578999999999999999987777654

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=83.90  E-value=2.1  Score=27.76  Aligned_cols=25  Identities=20%  Similarity=0.048  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHH
Q 017641          320 AALQWSICQDSLHRPKEARIMYEKL  344 (368)
Q Consensus       320 aqLwLAiAydA~GR~~EAiaLYkkL  344 (368)
                      +...|+++|-..|+.++|+.+|++.
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~a   28 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEA   28 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHH
Confidence            4567999999999999999998876

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=83.63  E-value=11  Score=28.39  Aligned_cols=52  Identities=29%  Similarity=0.252  Sum_probs=26.6

Q ss_pred             HHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641          290 LMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (368)
Q Consensus       290 AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (368)
                      ....|.+..|+..+..++......   ...+...++.+|...+..++|+..+.+.
T Consensus       177 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~  228 (291)
T COG0457         177 LEALGRYEEALELLEKALKLNPDD---DAEALLNLGLLYLKLGKYEEALEYYEKA  228 (291)
T ss_pred             HHHhcCHHHHHHHHHHHHhhCccc---chHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence            445555555555555555544443   3444444555555555555555555554

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=83.42  E-value=2.6  Score=26.53  Aligned_cols=31  Identities=26%  Similarity=0.097  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          319 LAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       319 eaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      ++..+++.+|-..|+.++|+..|++.. ..|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            466789999999999999999999985 3443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=82.76  E-value=4.6  Score=33.58  Aligned_cols=62  Identities=11%  Similarity=0.094  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHH
Q 017641          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIM  340 (368)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaL  340 (368)
                      .++.+.++.|..+|+.-..++||.-+++|+..+.... -==.+.=+|+.||.-.|++.+.++-
T Consensus         4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~-~rf~~lG~l~qA~~e~Gkyr~~L~f   65 (80)
T PF10579_consen    4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRE-DRFRVLGYLIQAHMEWGKYREMLAF   65 (80)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667789999999999999999999999999988743 1123334788999999999998763

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=82.65  E-value=22  Score=32.69  Aligned_cols=95  Identities=20%  Similarity=0.245  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCCh
Q 017641          255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP  334 (368)
Q Consensus       255 ~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~  334 (368)
                      ..+..+|++-|     -+.|+..+.   .+=.|..+|.||++.+|+..|+.+.+.    +...+.+.--+|.||.+.|..
T Consensus        27 ~D~e~lL~ALr-----vLRP~~~e~---~~~~~~l~i~r~~w~dA~rlLr~l~~~----~~~~p~~kALlA~CL~~~~D~   94 (160)
T PF09613_consen   27 DDAEALLDALR-----VLRPEFPEL---DLFDGWLHIVRGDWDDALRLLRELEER----APGFPYAKALLALCLYALGDP   94 (160)
T ss_pred             HHHHHHHHHHH-----HhCCCchHH---HHHHHHHHHHhCCHHHHHHHHHHHhcc----CCCChHHHHHHHHHHHHcCCh
Confidence            34455555555     344555444   566799999999999999999986433    344455555679999999986


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 017641          335 KEARIMYEKLQSHPNALVSKRARQFMF  361 (368)
Q Consensus       335 ~EAiaLYkkL~sHP~~eVrKQAkrLly  361 (368)
                      .==+--.+-|.+.+++..+.-.++|+=
T Consensus        95 ~Wr~~A~evle~~~d~~a~~Lv~~Ll~  121 (160)
T PF09613_consen   95 SWRRYADEVLESGADPDARALVRALLA  121 (160)
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence            544444556778889988888888763

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=82.02  E-value=1.9  Score=27.41  Aligned_cols=24  Identities=21%  Similarity=0.200  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHH
Q 017641          320 AALQWSICQDSLHRPKEARIMYEK  343 (368)
Q Consensus       320 aqLwLAiAydA~GR~~EAiaLYkk  343 (368)
                      +.+.|+.+|-..|+.++|..++++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhC
Confidence            567889999999999999988863

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>smart00028 TPR Tetratricopeptide repeats

Probab=81.55  E-value=1.9  Score=24.30  Aligned_cols=26  Identities=31%  Similarity=0.595  Sum_probs=17.7

Q ss_pred             HHHHHHHHhcCchhhhhHHHHHHHhh
Q 017641          284 LKDGDSLMDSGKLKEALPFYEKVMNK  309 (368)
Q Consensus       284 ~~~Gk~AmerGkYr~AV~~lEkA~~~  309 (368)
                      +..|..++..|+|.+|+..|+.++..
T Consensus         5 ~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        5 YNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            45566777777777777777776653

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=81.31  E-value=4.8  Score=42.73  Aligned_cols=60  Identities=23%  Similarity=0.270  Sum_probs=52.7

Q ss_pred             HHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      .|+.+++.+++.+|.+.|.+|+.+-|-.    ..++|.++.+|=..|+.+|||.+-..+. ..|+
T Consensus       346 ~~~i~~~~nk~~~A~e~~~kal~l~P~~----~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~  406 (484)
T COG4783         346 AGDILLEANKAKEAIERLKKALALDPNS----PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE  406 (484)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCCCc----cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence            4899999999999999999999998876    5678889999999999999999988875 4443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=81.14  E-value=6.7  Score=42.92  Aligned_cols=95  Identities=22%  Similarity=0.275  Sum_probs=68.6

Q ss_pred             HHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHH
Q 017641          261 LAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIM  340 (368)
Q Consensus       261 LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaL  340 (368)
                      +.-||+.+  -|||.-.-   ..|=.|..++..++|..|.=+|++|++.=|.++.+    .--+.+.|+.+|+.++|+.+
T Consensus       475 ~~~fr~Al--~~~~rhYn---AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi----~~~~g~~~~~~k~~d~AL~~  545 (638)
T KOG1126|consen  475 MKSFRKAL--GVDPRHYN---AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVI----LCHIGRIQHQLKRKDKALQL  545 (638)
T ss_pred             HHHHHhhh--cCCchhhH---HHHhhhhheeccchhhHHHHHHHhhhcCCccchhH----HhhhhHHHHHhhhhhHHHHH
Confidence            34576555  44555443   37888999999999999999999999999888854    33456779999999999999


Q ss_pred             HHHHhc--CCCHHHHHHHHHHhhhhh
Q 017641          341 YEKLQS--HPNALVSKRARQFMFSFQ  364 (368)
Q Consensus       341 YkkL~s--HP~~eVrKQAkrLlyiLE  364 (368)
                      |++-..  --++-.+=+-.++||++.
T Consensus       546 ~~~A~~ld~kn~l~~~~~~~il~~~~  571 (638)
T KOG1126|consen  546 YEKAIHLDPKNPLCKYHRASILFSLG  571 (638)
T ss_pred             HHHHHhcCCCCchhHHHHHHHHHhhc
Confidence            998641  222333334456666654

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=80.61  E-value=3.3  Score=44.68  Aligned_cols=68  Identities=19%  Similarity=0.246  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCc----cch--------------------------HHHHHHHHHHHHhc
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS----ELH--------------------------GLAALQWSICQDSL  331 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S----~LG--------------------------GeaqLwLAiAydA~  331 (368)
                      ..|++|..+|+.|.+.+|+=+||.|+..=|.+-    .||                          =++-|-||++|-.-
T Consensus       287 dPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNe  366 (579)
T KOG1125|consen  287 DPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNE  366 (579)
T ss_pred             ChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhh
Confidence            579999999999999999999999987665442    122                          34556688888887


Q ss_pred             CChHHHHH-HHHHHhcCCC
Q 017641          332 HRPKEARI-MYEKLQSHPN  349 (368)
Q Consensus       332 GR~~EAia-LYkkL~sHP~  349 (368)
                      |-..+|.. ||+.|+.||-
T Consensus       367 g~q~~Al~~L~~Wi~~~p~  385 (579)
T KOG1125|consen  367 GLQNQALKMLDKWIRNKPK  385 (579)
T ss_pred             hhHHHHHHHHHHHHHhCcc
Confidence            77766654 5677777763

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=80.55  E-value=4.7  Score=37.67  Aligned_cols=73  Identities=25%  Similarity=0.254  Sum_probs=54.4

Q ss_pred             HHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHH--HHHHHHhcCChHHHHHHHHHHhcCCCH----HHHHHHHHH
Q 017641          287 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQ--WSICQDSLHRPKEARIMYEKLQSHPNA----LVSKRARQF  359 (368)
Q Consensus       287 Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLw--LAiAydA~GR~~EAiaLYkkL~sHP~~----eVrKQAkrL  359 (368)
                      |+...+.--|+.|+++|++|...-.+...--.++.|-  ++--+--+|+.+||+..+.+|..|+..    .+..+||.+
T Consensus       132 ~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~  210 (214)
T PF09986_consen  132 GDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQ  210 (214)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence            4556666779999999999999888755422333333  566678899999999999999876654    567777765

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=80.01  E-value=6.2  Score=41.69  Aligned_cols=63  Identities=25%  Similarity=0.281  Sum_probs=49.3

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      .+=..+.+.+.|+|.+|+++|++....|.-+.    .+.-..|.+|-.+||.+||...|+.|. +.|.
T Consensus         7 lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~----~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd   70 (517)
T PF12569_consen    7 LLYKNSILEEAGDYEEALEHLEKNEKQILDKL----AVLEKRAELLLKLGRKEEAEKIYRELIDRNPD   70 (517)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            34445667889999999999999766665543    234456889999999999999999996 6665

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	368
3noj_A	238	4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloac	8e-04

>3noj_A 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloac decarboxylase; class II aldolase, A-B-B-A sandwich, metalloprotein, lyase; HET: PG4; 1.82A {Pseudomonas putida} Length = 238

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 20/77 (25%)

Query: 234 GGRTIRPGD-------------------VLETAEARAAKEERTRQLLAAYKKSVGL-NVD 273
           GG+ I PGD                    L  A  RA  EE  R  LAA +  + +  + 
Sbjct: 160 GGQLINPGDIVVADDDGVVVVRRDECESTLVAAAERAGLEEEKRLRLAAGELGLDIYKMR 219

Query: 274 PKLKSECEKALKDGDSL 290
            +L+++  + + + + L
Sbjct: 220 ERLEAKGLRYVDNIEDL 236

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	368
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.52
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.45
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.29
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.17
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.09
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.05
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.03
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.02
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.98
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.95
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.94
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.93
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.92
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.91
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.9
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.9
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.87
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.84
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	97.79
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.77
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.76
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.75
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	97.73
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.72
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.7
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.69
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.68
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.67
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.66
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.65
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.65
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.62
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.62
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.6
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.58
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.57
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.57
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.56
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.53
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.52
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.51
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.5
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.49
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.48
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.48
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.48
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	97.44
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	97.41
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.38
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.38
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	97.37
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.36
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.35
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	97.32
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	97.29
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.28
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.28
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.25
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.25
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	97.24
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.21
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.21
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.2
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.2
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	97.16
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.15
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	97.13
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.12
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.09
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.08
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.07
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.06
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	97.04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.0
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	97.0
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	96.99
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	96.99
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	96.98
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	96.97
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	96.97
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	96.96
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	96.95
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	96.94
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	96.93
3u4t_A	272	TPR repeat-containing protein; structural genomics	96.91
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	96.9
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	96.9
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	96.9
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	96.89
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	96.89
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	96.89
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	96.89
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	96.88
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	96.87
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	96.85
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	96.84
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	96.84
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	96.84
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	96.8
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	96.78
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	96.77
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	96.77
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	96.75
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	96.72
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	96.69
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	96.68
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	96.67
2l6j_A	111	TPR repeat-containing protein associated with HSP;	96.67
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.65
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	96.65
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	96.64
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	96.63
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	96.61
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	96.59
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	96.56
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	96.55
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	96.55
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	96.54
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	96.53
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	96.53
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	96.47
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	96.46
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	96.45
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	96.44
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	96.43
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.42
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	96.41
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.39
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	96.39
3k9i_A	117	BH0479 protein; putative protein binding protein,	96.35
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	96.35
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	96.34
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	96.33
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.32
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	96.31
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	96.29
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	96.28
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	96.27
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	96.2
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	96.18
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	96.18
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	96.12
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	96.11
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	96.11
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	96.04
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	96.04
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	96.03
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	96.03
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	96.01
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	95.97
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	95.93
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	95.93
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	95.92
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	95.9
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	95.85
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	95.84
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	95.82
2gw1_A	514	Mitochondrial precursor proteins import receptor;	95.8
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	95.77
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	95.73
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	95.71
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	95.71
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	95.46
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	95.43
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	95.38
4g1t_A	472	Interferon-induced protein with tetratricopeptide	95.28
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	95.23
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	95.19
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	95.18
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	95.12
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	94.85
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	94.85
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	94.6
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.55
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	94.42
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	94.05
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	93.99
1klx_A	138	Cysteine rich protein B; structural genomics, heli	93.82
2kat_A	115	Uncharacterized protein; NESG, structure, structur	93.36
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	93.19
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	93.19
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	93.18
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	92.89
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	92.71
4g1t_A	472	Interferon-induced protein with tetratricopeptide	92.35
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	92.24
1klx_A	138	Cysteine rich protein B; structural genomics, heli	91.46
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	91.08
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	90.35
1pc2_A	152	Mitochondria fission protein; unknown function; NM	90.21
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	89.1
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	89.08
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	87.39
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	87.18
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	87.09
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	86.47
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	85.86
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	84.29
2ijq_A	161	Hypothetical protein; structural genomics, PSI, pr	83.18
2cwy_A	94	Hypothetical protein TTHA0068; structural genomics	82.19
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	82.14
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	81.24
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	80.54
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	80.14

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.52  E-value=7.9e-07  Score=73.87  Aligned_cols=102  Identities=12%  Similarity=0.086  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCC
Q 017641          254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR  333 (368)
Q Consensus       254 ~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR  333 (368)
                      ..+..+.+..|++-.  .++|....   --+..|..++..|+|.+|+..|++|+.+-|...    .+.+.++.||..+|+
T Consensus        49 ~g~~~eA~~~~~~al--~~~P~~~~---~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~----~~~~~lg~~~~~lg~  119 (151)
T 3gyz_A           49 KGRIEEAEVFFRFLC--IYDFYNVD---YIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY----TPVFHTGQCQLRLKA  119 (151)
T ss_dssp             TTCHHHHHHHHHHHH--HHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC----HHHHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHHHH--HhCCCCHH---HHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc----HHHHHHHHHHHHcCC
Confidence            345566667776544  45555433   356679999999999999999999999887654    578899999999999


Q ss_pred             hHHHHHHHHHHh-cCCCHHHHHHHHHHhhhhh
Q 017641          334 PKEARIMYEKLQ-SHPNALVSKRARQFMFSFQ  364 (368)
Q Consensus       334 ~~EAiaLYkkL~-sHP~~eVrKQAkrLlyiLE  364 (368)
                      .++|+..|++.. ..|+..++++|+.+|-.++
T Consensus       120 ~~eA~~~~~~al~l~~~~~~~~~A~~ll~~l~  151 (151)
T 3gyz_A          120 PLKAKECFELVIQHSNDEKLKIKAQSYLDAIQ  151 (151)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Confidence            999999999985 7999999999999998764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.45  E-value=1.1e-06  Score=68.99  Aligned_cols=102  Identities=13%  Similarity=0.114  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccc---hHHHHHHHHHHHH
Q 017641          253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL---HGLAALQWSICQD  329 (368)
Q Consensus       253 r~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~L---GGeaqLwLAiAyd  329 (368)
                      +..+..+.+..|.+-.  +++|...   ..-+..|..++..|+|.+|+..|++|+++-+.....   -+.+...++.||.
T Consensus        20 ~~~~~~~A~~~y~~Al--~~~p~~~---~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~   94 (127)
T 4gcn_A           20 KQKDFEKAHVHYDKAI--ELDPSNI---TFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQ   94 (127)
T ss_dssp             HTTCHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHH--HhCCCCH---HHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence            3446678888887654  6677653   335678999999999999999999999987655432   2667788999999


Q ss_pred             hcCChHHHHHHHHHH-hcCCCHHHHHHHHHH
Q 017641          330 SLHRPKEARIMYEKL-QSHPNALVSKRARQF  359 (368)
Q Consensus       330 A~GR~~EAiaLYkkL-~sHP~~eVrKQAkrL  359 (368)
                      +.|+.++|+..|++- ..||++++.++-++|
T Consensus        95 ~~~~~~~A~~~~~kal~~~~~~~~~~~l~~l  125 (127)
T 4gcn_A           95 KQNDLSLAVQWFHRSLSEFRDPELVKKVKEL  125 (127)
T ss_dssp             HTTCHHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhhCcCHHHHHHHHHh
Confidence            999999999999985 579999998876554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.29  E-value=7e-06  Score=61.13  Aligned_cols=84  Identities=12%  Similarity=0.128  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHH
Q 017641          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQ  358 (368)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkr  358 (368)
                      .+..+..|..++..|+|.+|+.+|++++..-+.. ..-..+.++++.||...|+.++|+..|+++. .+|+......|+.
T Consensus        39 ~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~  117 (129)
T 2xev_A           39 PNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH-DKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQE  117 (129)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence            3557888999999999999999999999876543 4457889999999999999999999999985 7899888888877


Q ss_pred             Hhhhhh
Q 017641          359 FMFSFQ  364 (368)
Q Consensus       359 LlyiLE  364 (368)
                      .+-.++
T Consensus       118 ~l~~l~  123 (129)
T 2xev_A          118 RLQSIR  123 (129)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            665544

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.17  E-value=1.8e-05  Score=59.99  Aligned_cols=102  Identities=13%  Similarity=0.164  Sum_probs=74.9

Q ss_pred             HHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHH
Q 017641          259 QLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEAR  338 (368)
Q Consensus       259 e~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAi  338 (368)
                      +.+..|++-.-+..+..  ......+..|..++..|+|.+|+.+|++|++.-+..    ..+.+.+++||...|+.++|+
T Consensus         8 ~A~~~~~~al~~~~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            8 QAVPYYEKAIASGLQGK--DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH----QALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             CCHHHHHHHHSSCCCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHcCCCCc--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHcCCHHHHH
Confidence            34555555543332222  334557888999999999999999999999987765    678899999999999999999


Q ss_pred             HHHHHHh-cCC-CHHHHHHHHHHhhhhhcc
Q 017641          339 IMYEKLQ-SHP-NALVSKRARQFMFSFQVY  366 (368)
Q Consensus       339 aLYkkL~-sHP-~~eVrKQAkrLlyiLEAm  366 (368)
                      ..|++.. .+| ++.+..-.+.+.+-.+++
T Consensus        82 ~~~~~al~~~p~~~~~~~~~~ai~~~~~~l  111 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQSYKQAILFYADKL  111 (117)
T ss_dssp             HHHHHHHHHHCCCHHHHHTHHHHHHHTTCT
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence            9999975 444 455655555555444443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.09  E-value=2.2e-05  Score=58.92  Aligned_cols=77  Identities=9%  Similarity=0.020  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh----cCCCHHHHHHHH
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ----SHPNALVSKRAR  357 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~----sHP~~eVrKQAk  357 (368)
                      ..+..|..++..|+|.+|+.+|++|+++-+...    .+.+.++.||...|+.++|+..|++..    .+++....++..
T Consensus         9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~   84 (100)
T 3ma5_A            9 TRYALAQEHLKHDNASRALALFEELVETDPDYV----GTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ   84 (100)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence            467889999999999999999999999876654    478899999999999999999999875    467777777766


Q ss_pred             HHhhh
Q 017641          358 QFMFS  362 (368)
Q Consensus       358 rLlyi  362 (368)
                      +++-.
T Consensus        85 ~~l~~   89 (100)
T 3ma5_A           85 DAKLK   89 (100)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.05  E-value=4.3e-05  Score=55.18  Aligned_cols=67  Identities=19%  Similarity=0.212  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (368)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (368)
                      ++..+..|..++..|+|.+|+.+|++|+..-+..    ..+...++.||-..|+.++|+..|++.. .+|+-
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN----PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            4567889999999999999999999999987654    5678889999999999999999999975 56763

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.03  E-value=1.9e-05  Score=66.72  Aligned_cols=78  Identities=15%  Similarity=0.128  Sum_probs=67.9

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhc----------CChHHHHHHHHHHh-cCCCHH
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL----------HRPKEARIMYEKLQ-SHPNAL  351 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~----------GR~~EAiaLYkkL~-sHP~~e  351 (368)
                      .+..|..++..|+|.+|+..|+++++.-+ .+....++.++++.||..+          |+.++|+..|+++. .||+-.
T Consensus       151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  229 (261)
T 3qky_A          151 QYEAARLYERRELYEAAAVTYEAVFDAYP-DTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP  229 (261)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCC-CCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence            38889999999999999999999998755 5667889999999999988          99999999999996 799887


Q ss_pred             HHHHHHHHhh
Q 017641          352 VSKRARQFMF  361 (368)
Q Consensus       352 VrKQAkrLly  361 (368)
                      .-++|..++-
T Consensus       230 ~~~~a~~~l~  239 (261)
T 3qky_A          230 LLRTAEELYT  239 (261)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777776654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.02  E-value=2.8e-05  Score=61.15  Aligned_cols=57  Identities=12%  Similarity=0.050  Sum_probs=27.3

Q ss_pred             HHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641          284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (368)
Q Consensus       284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (368)
                      +..|..++..|+|.+|+..|++|+++-+..    ..+-+.++.||..+|+.++|+..|++.
T Consensus        51 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~~~~~~A~~~~~~a  107 (126)
T 4gco_A           51 SNRAACLTKLMEFQRALDDCDTCIRLDSKF----IKGYIRKAACLVAMREWSKAQRAYEDA  107 (126)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHhhHHHhhccHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            334444455555555555555544443322    234444555555555555555555544

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.98  E-value=5.2e-05  Score=58.43  Aligned_cols=72  Identities=11%  Similarity=0.002  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCc---cchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHH
Q 017641          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS---ELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALV  352 (368)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S---~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eV  352 (368)
                      +.-|..|..+|+.|+|..|+.+|+.|+.......   .--..+-.+|+.||...|+.++|+.+|+++. -.|+-..
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~   81 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR   81 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence            4568899999999999999999999999886543   2346788899999999999999999999985 6776543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.95  E-value=1.4e-05  Score=63.21  Aligned_cols=64  Identities=17%  Similarity=0.142  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      -.+..|..++..|+|.+|+.+|++|+.+-+..    ..+.+.++.||..+|+.++|+..|++.. .+|+
T Consensus        65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~----~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  129 (162)
T 3rkv_A           65 LYANMSQCYLNIGDLHEAEETSSEVLKREETN----EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA  129 (162)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc----hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence            34445667777777777777777777664433    4566677777777777777777777764 4555

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.94  E-value=8.2e-05  Score=53.96  Aligned_cols=84  Identities=15%  Similarity=0.058  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch---HHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHH
Q 017641          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---GLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRA  356 (368)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG---GeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQA  356 (368)
                      ...+..|..++..|+|.+|+.+|+++++..+......   ..+.+.++.+|...|+.++|+..|++.. .+|+..+....
T Consensus        39 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l  118 (131)
T 1elr_A           39 TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKC  118 (131)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            3456789999999999999999999999876543222   6788889999999999999999999985 67888887777


Q ss_pred             HHHhhhhh
Q 017641          357 RQFMFSFQ  364 (368)
Q Consensus       357 krLlyiLE  364 (368)
                      .++.-.+.
T Consensus       119 ~~~~~~~~  126 (131)
T 1elr_A          119 QQAEKILK  126 (131)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66655443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.93  E-value=7.1e-05  Score=60.21  Aligned_cols=102  Identities=13%  Similarity=0.008  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCCh
Q 017641          255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP  334 (368)
Q Consensus       255 ~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~  334 (368)
                      .+..+.+..|++-+  .++|....   ..+..|..++..|+|.+|+..|++|+.+-+...    .+.+.++.||...|+.
T Consensus        35 g~~~~A~~~~~~al--~~~p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~----~~~~~lg~~~~~~g~~  105 (148)
T 2vgx_A           35 GXYEDAHXVFQALC--VLDHYDSR---FFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP----RFPFHAAECLLQXGEL  105 (148)
T ss_dssp             TCHHHHHHHHHHHH--HHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT----HHHHHHHHHHHHTTCH
T ss_pred             CChHHHHHHHHHHH--HcCcccHH---HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc----hHHHHHHHHHHHcCCH
Confidence            34556666666543  44554432   246789999999999999999999999877654    5678899999999999


Q ss_pred             HHHHHHHHHHh-cCCC----HHHHHHHHHHhhhhhc
Q 017641          335 KEARIMYEKLQ-SHPN----ALVSKRARQFMFSFQV  365 (368)
Q Consensus       335 ~EAiaLYkkL~-sHP~----~eVrKQAkrLlyiLEA  365 (368)
                      ++|+..|++.. ..|.    ..++.++..++-.++-
T Consensus       106 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~  141 (148)
T 2vgx_A          106 AEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKL  141 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHHHh
Confidence            99999999885 4554    6778888888766553

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.92  E-value=3.4e-05  Score=64.83  Aligned_cols=70  Identities=10%  Similarity=0.084  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (368)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (368)
                      ++..|..|..+|..|+|.+|+..|++++..-+ .+...-++.++++.||...|+.++|+..|+++. .||.-
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~   74 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH   74 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC
Confidence            35678999999999999999999999998655 466777899999999999999999999999985 67764

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.91  E-value=5.4e-05  Score=57.08  Aligned_cols=86  Identities=13%  Similarity=0.041  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcC
Q 017641          253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH  332 (368)
Q Consensus       253 r~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G  332 (368)
                      +..+..+.+..|.+-.  .++|...   ...+..|..++..|+|.+|+..|++|+..-+..    ..+.+.++.||...|
T Consensus        16 ~~~~~~~A~~~~~~al--~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~   86 (126)
T 3upv_A           16 TKSDWPNAVKAYTEMI--KRAPEDA---RGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF----VRAYIRKATAQIAVK   86 (126)
T ss_dssp             HTTCHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT
T ss_pred             HhcCHHHHHHHHHHHH--HhCCCCh---HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHh
Confidence            3344566666666444  4444432   345667888888888888888888888775543    456777888888888


Q ss_pred             ChHHHHHHHHHHh-cC
Q 017641          333 RPKEARIMYEKLQ-SH  347 (368)
Q Consensus       333 R~~EAiaLYkkL~-sH  347 (368)
                      +.++|+..|++.. .+
T Consensus        87 ~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           87 EYASALETLDAARTKD  102 (126)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC
Confidence            8888888888764 45

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.90  E-value=6.8e-05  Score=58.62  Aligned_cols=100  Identities=12%  Similarity=0.034  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCCh
Q 017641          255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP  334 (368)
Q Consensus       255 ~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~  334 (368)
                      .+..+.+..|++-+  .++|...   .-.+..|..++..|+|.+|+.+|++|+.+-+...    .+.+.++.||...|+.
T Consensus        32 g~~~~A~~~~~~al--~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~  102 (142)
T 2xcb_A           32 GKWDDAQKIFQALC--MLDHYDA---RYFLGLGACRQSLGLYEQALQSYSYGALMDINEP----RFPFHAAECHLQLGDL  102 (142)
T ss_dssp             TCHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----HHHHHHHHHHHHTTCH
T ss_pred             ccHHHHHHHHHHHH--HhCCccH---HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCCH
Confidence            34455555555433  3344432   2356779999999999999999999999877654    4678899999999999


Q ss_pred             HHHHHHHHHHh-cCC----CHHHHHHHHHHhhhh
Q 017641          335 KEARIMYEKLQ-SHP----NALVSKRARQFMFSF  363 (368)
Q Consensus       335 ~EAiaLYkkL~-sHP----~~eVrKQAkrLlyiL  363 (368)
                      ++|+..|++.. .+|    ...++.++..++-.+
T Consensus       103 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l  136 (142)
T 2xcb_A          103 DGAESGFYSARALAAAQPAHEALAARAGAMLEAV  136 (142)
T ss_dssp             HHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence            99999999875 444    566777777776544

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.90  E-value=5.5e-05  Score=56.25  Aligned_cols=68  Identities=12%  Similarity=0.064  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (368)
                      ..|..|..++..|+|.+|+.+|++++..-+ .+.....+.++++.||-..|+.++|+..|+++. .+|+.
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~   72 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH   72 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence            367889999999999999999999998765 455566899999999999999999999999985 57764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.87  E-value=7.7e-05  Score=58.38  Aligned_cols=64  Identities=11%  Similarity=-0.038  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      +.+......|..+|..|+|.+|+.+|++|+++-|..    ..+-..++.||-.+|+.++|+..|++..
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~----~~~~~nlg~~~~~~~~~~~A~~~~~~al   69 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN----ITFYNNKAAVYFEEKKFAECVQFCEKAV   69 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence            344445567999999999999999999999987655    4567789999999999999999999874

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.84  E-value=0.00036  Score=52.17  Aligned_cols=96  Identities=17%  Similarity=0.114  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCC
Q 017641          254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR  333 (368)
Q Consensus       254 ~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR  333 (368)
                      ..+..+.+..|++-..+  +|.........+..|..++..|+|.+|+.+|++++..-+..    ..+.+.++.||...|+
T Consensus        41 ~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~  114 (148)
T 2dba_A           41 CGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD----VKALYRRSQALEKLGR  114 (148)
T ss_dssp             TTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC----HHHHHHHHHHHHHHTC
T ss_pred             hCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC----HHHHHHHHHHHHHcCC
Confidence            34566777788776644  45443445667888999999999999999999999885543    6778889999999999


Q ss_pred             hHHHHHHHHHHh-cCCC-HHHHHH
Q 017641          334 PKEARIMYEKLQ-SHPN-ALVSKR  355 (368)
Q Consensus       334 ~~EAiaLYkkL~-sHP~-~eVrKQ  355 (368)
                      .++|+..|+++. .+|+ ..+...
T Consensus       115 ~~~A~~~~~~al~~~p~~~~~~~~  138 (148)
T 2dba_A          115 LDQAVLDLQRCVSLEPKNKVFQEA  138 (148)
T ss_dssp             HHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHH
Confidence            999999999985 5664 444443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=97.79  E-value=0.00019  Score=57.42  Aligned_cols=85  Identities=11%  Similarity=0.031  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChH
Q 017641          256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK  335 (368)
Q Consensus       256 rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~  335 (368)
                      .+.+.++.|.+..  ..+|   +.....|..|..+|..|+|.+|+++|++|+++-+..    ..+...|+.||...|+.+
T Consensus        12 ~~e~ai~~~~~a~--~~~p---~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A           12 DVERYIASVQGST--PSPR---QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD----PKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             HHHHHHHHHHHHS--CSHH---HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHHHHHhc--ccCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCchH
Confidence            3455667776554  3333   334456889999999999999999999999987654    567888999999999999


Q ss_pred             HHHHHHHHHh-cCCC
Q 017641          336 EARIMYEKLQ-SHPN  349 (368)
Q Consensus       336 EAiaLYkkL~-sHP~  349 (368)
                      +|+..|++.. .+|+
T Consensus        83 ~A~~~~~~al~~~p~   97 (150)
T 4ga2_A           83 KAVECYRRSVELNPT   97 (150)
T ss_dssp             HHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhCCC
Confidence            9999999975 5775

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.77  E-value=0.00015  Score=51.37  Aligned_cols=66  Identities=20%  Similarity=0.169  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhc-CChHHHHHHHHHHh-cCCC
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL-HRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~-GR~~EAiaLYkkL~-sHP~  349 (368)
                      ..+..|..++..|+|.+|+.+|++++...+.  .....+...++.||... |+.++|+..++++. .||+
T Consensus        42 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~  109 (112)
T 2kck_A           42 YWLMKGKALYNLERYEEAVDCYNYVINVIED--EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH  109 (112)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC--TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCcc--cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence            3577899999999999999999999988665  23467888899999999 99999999999996 5664

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.76  E-value=7e-05  Score=54.17  Aligned_cols=63  Identities=19%  Similarity=0.166  Sum_probs=55.1

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHH-HHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGL-AALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGe-aqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      .|..|..++..|+|.+|+..|+++++.-+..    .. +.++++.||...|+.++|+..|++.. .+|+
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~   67 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVG----KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD   67 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSST----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            4788999999999999999999999986654    34 78889999999999999999999985 5664

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.75  E-value=0.00014  Score=57.56  Aligned_cols=83  Identities=14%  Similarity=0.059  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCC
Q 017641          254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR  333 (368)
Q Consensus       254 ~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR  333 (368)
                      ..+..+.+..|++-+  .++|.   .....+..|..++..|+|.+|+.+|++|+.+-+..    ..+.+.++.||...|+
T Consensus        24 ~g~~~~A~~~~~~al--~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~   94 (164)
T 3sz7_A           24 RKEYSKAIDLYTQAL--SIAPA---NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY----SKAWSRLGLARFDMAD   94 (164)
T ss_dssp             TTCHHHHHHHHHHHH--HHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHHHH--HhCCc---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccC
Confidence            334555666665444  33333   24556677888888888888888888888876554    5677788888888888


Q ss_pred             hHHHHHHHHHHh
Q 017641          334 PKEARIMYEKLQ  345 (368)
Q Consensus       334 ~~EAiaLYkkL~  345 (368)
                      .++|+..|++..
T Consensus        95 ~~~A~~~~~~al  106 (164)
T 3sz7_A           95 YKGAKEAYEKGI  106 (164)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888888888874

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=97.73  E-value=0.00015  Score=61.22  Aligned_cols=69  Identities=14%  Similarity=0.107  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      ++..|..|..+|..|+|.+|+.+|+++++.-+ .+.....+.++++.||-..|+.++|+..|+++. .+|.
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~   84 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI   84 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC
Confidence            45689999999999999999999999998765 455668999999999999999999999999996 5773

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.72  E-value=0.00053  Score=47.83  Aligned_cols=67  Identities=21%  Similarity=0.200  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (368)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (368)
                      ....+..|..++..|+|.+|+.+|++|++.-+..    ..+.+.++.||...|+.++|+..|++.. .+|+.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~   76 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN   76 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            3456778999999999999999999999886544    4678889999999999999999999985 56653

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.70  E-value=0.00014  Score=60.35  Aligned_cols=72  Identities=10%  Similarity=0.086  Sum_probs=60.3

Q ss_pred             cCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          271 NVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       271 ~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      .++|..   .+..|..|..++..|+|.+|+.+|++|+.+-|.+    ..+.+.|+.||...||.++|+..|++.. -.|+
T Consensus        30 ~l~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~----~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~  102 (151)
T 3gyz_A           30 AIPDDM---MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN----VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN  102 (151)
T ss_dssp             CSCHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred             CCCHHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence            455554   4458999999999999999999999999987755    4467779999999999999999999985 4554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.69  E-value=0.00026  Score=55.27  Aligned_cols=74  Identities=16%  Similarity=0.108  Sum_probs=61.3

Q ss_pred             CCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cC
Q 017641          269 GLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SH  347 (368)
Q Consensus       269 Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sH  347 (368)
                      -+.++|..   .+..+..|..++..|+|.+|+.+|++++..-+.+    ..+.+.++.||...|+.++|+..|++.. ..
T Consensus        10 al~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   82 (142)
T 2xcb_A           10 LRGLSEDT---LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD----ARYFLGLGACRQSLGLYEQALQSYSYGALMD   82 (142)
T ss_dssp             CTTCCHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHcCCHHH---HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            35666664   3457889999999999999999999999887654    4567789999999999999999999985 34


Q ss_pred             CC
Q 017641          348 PN  349 (368)
Q Consensus       348 P~  349 (368)
                      |+
T Consensus        83 p~   84 (142)
T 2xcb_A           83 IN   84 (142)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.68  E-value=0.00049  Score=51.33  Aligned_cols=76  Identities=11%  Similarity=0.005  Sum_probs=60.6

Q ss_pred             HHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHH
Q 017641          261 LAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIM  340 (368)
Q Consensus       261 LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaL  340 (368)
                      +..|++-+  .++|...   ...+..|..++..|+|.+|+.+|++|+..-+..    ..+.+.|+.||...|+.++|+..
T Consensus         5 ~~~~~~al--~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~   75 (115)
T 2kat_A            5 TERLEAML--AQGTDNM---LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY----SVAWKWLGKTLQGQGDRAGARQA   75 (115)
T ss_dssp             HHHHHHHH--TTTCCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHH--HhCCCcH---HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHcCCHHHHHHH
Confidence            44454443  3444432   346788999999999999999999999886644    56788999999999999999999


Q ss_pred             HHHHh
Q 017641          341 YEKLQ  345 (368)
Q Consensus       341 YkkL~  345 (368)
                      |++..
T Consensus        76 ~~~al   80 (115)
T 2kat_A           76 WESGL   80 (115)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99975

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.67  E-value=0.00021  Score=50.90  Aligned_cols=85  Identities=18%  Similarity=0.157  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChH
Q 017641          256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK  335 (368)
Q Consensus       256 rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~  335 (368)
                      +..+.+..|.+-.  .++|..   ....+..|..++..|+|.+|+.+|++++..-+.    ...+.+.++.||...|+.+
T Consensus        19 ~~~~A~~~~~~~~--~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~   89 (118)
T 1elw_A           19 NIDDALQCYSEAI--KLDPHN---HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD----WGKGYSRKAAALEFLNRFE   89 (118)
T ss_dssp             CHHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHH
T ss_pred             cHHHHHHHHHHHH--HHCCCc---HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHHhhHH
Confidence            4445555565443  334433   334667788889999999999999998887654    3567788889999999999


Q ss_pred             HHHHHHHHHh-cCCC
Q 017641          336 EARIMYEKLQ-SHPN  349 (368)
Q Consensus       336 EAiaLYkkL~-sHP~  349 (368)
                      +|+..|++.. .+|+
T Consensus        90 ~A~~~~~~~~~~~~~  104 (118)
T 1elw_A           90 EAKRTYEEGLKHEAN  104 (118)
T ss_dssp             HHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHcCCC
Confidence            9999998875 4554

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.66  E-value=0.00024  Score=57.07  Aligned_cols=73  Identities=11%  Similarity=0.069  Sum_probs=60.2

Q ss_pred             CcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 017641          270 LNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP  348 (368)
Q Consensus       270 l~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP  348 (368)
                      +.++|..   ....+..|..++..|+|.+|+.+|++++..-+.+    -.+.+.++.||...|+.++|+..|++.. ..|
T Consensus        14 l~~~p~~---~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p   86 (148)
T 2vgx_A           14 NEISSDT---LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD----SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI   86 (148)
T ss_dssp             TTCCHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HcCCHhh---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            3455654   4457889999999999999999999999987765    3556789999999999999999999985 455


Q ss_pred             C
Q 017641          349 N  349 (368)
Q Consensus       349 ~  349 (368)
                      +
T Consensus        87 ~   87 (148)
T 2vgx_A           87 X   87 (148)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.65  E-value=0.00039  Score=53.03  Aligned_cols=65  Identities=11%  Similarity=-0.061  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (368)
                      ..+..|..++..|+|.+|+.+|++++..-+..    ..+.+.++.||...|+.++|+..|++.. .+|..
T Consensus        49 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~  114 (166)
T 1a17_A           49 YYGNRSLAYLRTECYGYALGDATRAIELDKKY----IKGYYRRAASNMALGKFRAALRDYETVVKVKPHD  114 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence            45667888899999999999999998876543    4677888999999999999999998875 46643

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.65  E-value=0.00052  Score=57.62  Aligned_cols=65  Identities=8%  Similarity=0.006  Sum_probs=57.1

Q ss_pred             HHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      +..|..++.+|+|.+|+..|+++++.-|. +....++...++.||..+|+.++|+..+++|. .+|.
T Consensus       151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~  216 (225)
T 2yhc_A          151 YSVAEYYTERGAWVAVVNRVEGMLRDYPD-TQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN  216 (225)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSTT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHCcC-CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence            67899999999999999999999988765 44556899999999999999999999999996 4443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.62  E-value=0.00031  Score=50.91  Aligned_cols=63  Identities=14%  Similarity=0.032  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      .++..+..|..++..|+|.+|+.+|++++...+..    ..+.+.++.||-..|+.++|+..|++..
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~   65 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN----MTYITNQAAVYFEKGDYNKCRELCEKAI   65 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            45667889999999999999999999999986553    5678889999999999999999999985

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.62  E-value=0.0003  Score=52.72  Aligned_cols=83  Identities=12%  Similarity=0.068  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCC
Q 017641          254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR  333 (368)
Q Consensus       254 ~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR  333 (368)
                      ..+..+.+..|++-+  .++|.   .....+..|..++..|+|.+|+.+|++|+..-+.    ...+.+.++.||...|+
T Consensus        22 ~~~~~~A~~~~~~al--~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~   92 (137)
T 3q49_B           22 GRKYPEAAACYGRAI--TRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ----SVKAHFFLGQCQLEMES   92 (137)
T ss_dssp             TTCHHHHHHHHHHHH--HHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTC
T ss_pred             hCcHHHHHHHHHHHH--hhCcC---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHHHhh
Confidence            334555566665443  33332   2445566677888888888888888888776544    34567778888888888


Q ss_pred             hHHHHHHHHHHh
Q 017641          334 PKEARIMYEKLQ  345 (368)
Q Consensus       334 ~~EAiaLYkkL~  345 (368)
                      .++|+..|++..
T Consensus        93 ~~~A~~~~~~a~  104 (137)
T 3q49_B           93 YDEAIANLQRAY  104 (137)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888888887764

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.60  E-value=0.00052  Score=51.62  Aligned_cols=67  Identities=16%  Similarity=0.159  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      .++..+..|..+|..|+|.+|+.+|++|+..-+..    ..+...++.||-..|+.++|+..|++.. .+|+
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~   70 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED----ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN   70 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            45677889999999999999999999999987765    4778889999999999999999999985 4665

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.58  E-value=0.00031  Score=51.38  Aligned_cols=88  Identities=11%  Similarity=0.058  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCC
Q 017641          254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR  333 (368)
Q Consensus       254 ~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR  333 (368)
                      ..+..+.+..|.+-.  .++|..   ....+..|..++..|+|.+|+.+|++++..-+.    ...+.+.++.||...|+
T Consensus        29 ~~~~~~A~~~~~~al--~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~~~   99 (133)
T 2lni_A           29 KGDYPQAMKHYTEAI--KRNPKD---AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT----FIKGYTRKAAALEAMKD   99 (133)
T ss_dssp             TTCSHHHHHHHHHHH--TTCTTC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHHHH--HcCCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----chHHHHHHHHHHHHHhh
Confidence            344556666776554  334432   566777899999999999999999999987554    35677889999999999


Q ss_pred             hHHHHHHHHHHh-cCCCH
Q 017641          334 PKEARIMYEKLQ-SHPNA  350 (368)
Q Consensus       334 ~~EAiaLYkkL~-sHP~~  350 (368)
                      .++|+..|++.. .+|+.
T Consensus       100 ~~~A~~~~~~~~~~~p~~  117 (133)
T 2lni_A          100 YTKAMDVYQKALDLDSSC  117 (133)
T ss_dssp             HHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHHHHHHhCCCc
Confidence            999999999875 56653

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.57  E-value=0.00013  Score=56.75  Aligned_cols=88  Identities=13%  Similarity=0.007  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcC
Q 017641          253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH  332 (368)
Q Consensus       253 r~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G  332 (368)
                      +..+..+.+..|++-+  .++|..   .+..+..|..++..|++.+|+..|++|+++-+..    ..+.+.|+.||...|
T Consensus        29 ~~g~~~~A~~~~~~al--~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~----~~~~~~la~~~~~~g   99 (121)
T 1hxi_A           29 KLANLAEAALAFEAVC--QKEPER---EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD----IAVHAALAVSHTNEH   99 (121)
T ss_dssp             HTTCHHHHHHHHHHHH--HHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHH--HHCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcC
Confidence            3445566666666544  445554   3346778999999999999999999999987764    357788999999999


Q ss_pred             ChHHHHHHHHHHh-cCCC
Q 017641          333 RPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       333 R~~EAiaLYkkL~-sHP~  349 (368)
                      +.++|+..|+++. .+|.
T Consensus       100 ~~~~A~~~~~~al~~~P~  117 (121)
T 1hxi_A          100 NANAALASLRAWLLSQPQ  117 (121)
T ss_dssp             HHHHHHHHHHHHHC----
T ss_pred             CHHHHHHHHHHHHHhCcC
Confidence            9999999999875 5664

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.57  E-value=0.00067  Score=53.24  Aligned_cols=72  Identities=13%  Similarity=0.226  Sum_probs=60.9

Q ss_pred             cCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          271 NVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       271 ~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      .|||+.   ++.....|..+|..|+|.+|+.+|++|++.-+..    ..+-..+++||..+|+.++|+..|++.. .+|+
T Consensus         7 ~inP~~---a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~   79 (126)
T 4gco_A            7 YINPEL---AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN----AILYSNRAACLTKLMEFQRALDDCDTCIRLDSK   79 (126)
T ss_dssp             CCCHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHCHHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh
Confidence            477764   4446778999999999999999999999987765    4577889999999999999999999975 4555

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.56  E-value=0.00028  Score=52.81  Aligned_cols=69  Identities=17%  Similarity=0.208  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      ++..+..|..++..|+|.+|+.+|++++...+.. ..-..+.++++.||-..|+.++|+..|++.. .+|.
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   97 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATP-QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG   97 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc-hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc
Confidence            4557889999999999999999999999876532 2236788889999999999999999999975 5664

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.53  E-value=0.00041  Score=56.53  Aligned_cols=73  Identities=14%  Similarity=0.195  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccc-h-----------HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641          277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL-H-----------GLAALQWSICQDSLHRPKEARIMYEKL  344 (368)
Q Consensus       277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~L-G-----------GeaqLwLAiAydA~GR~~EAiaLYkkL  344 (368)
                      ...++..+..|..++..|+|.+|+.+|++|+...+..... .           ..+..+++.||-..|+.++|+..|++.
T Consensus        35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  114 (198)
T 2fbn_A           35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV  114 (198)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            3455566778888888888888888888888876654311 1           266777888888888888888888877


Q ss_pred             h-cCCC
Q 017641          345 Q-SHPN  349 (368)
Q Consensus       345 ~-sHP~  349 (368)
                      . .+|.
T Consensus       115 l~~~p~  120 (198)
T 2fbn_A          115 LKIDKN  120 (198)
T ss_dssp             HHHSTT
T ss_pred             HHhCcc
Confidence            4 4553

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.52  E-value=0.00088  Score=48.27  Aligned_cols=64  Identities=17%  Similarity=0.101  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      ..+..|..++..|+|.+|+.+|++++..-+..    ..+.+.++.+|...|+.++|+..|+++. .+|+
T Consensus        48 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~  112 (131)
T 2vyi_A           48 YFCNRAAAYSKLGNYAGAVQDCERAICIDPAY----SKAYGRMGLALSSLNKHVEAVAYYKKALELDPD  112 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHhcCccC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc
Confidence            35667888888999999999999988875443    5677888889999999999999998874 4664

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.51  E-value=0.00077  Score=47.63  Aligned_cols=63  Identities=19%  Similarity=0.133  Sum_probs=54.6

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      .+..|..++..|+|.+|+.+|++++..-+..    ..+.+.++.+|...|+.++|+..|++.. .+|.
T Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   72 (112)
T 2kck_A            9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEE----SKYWLMKGKALYNLERYEEAVDCYNYVINVIED   72 (112)
T ss_dssp             GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            3567899999999999999999999986654    4677889999999999999999999985 5665

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.50  E-value=0.0013  Score=52.01  Aligned_cols=69  Identities=13%  Similarity=0.165  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      ...++..+..|..++..|+|.+|+.+|++|+++-+..    ..+.+.++.||-..|+.++|+..|++.. .+|+
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~   77 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN----PIYLSNRAAAYSASGQHEKAAEDAELATVVDPK   77 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            3566778999999999999999999999999987764    5678889999999999999999999985 5665

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.49  E-value=0.0018  Score=47.28  Aligned_cols=68  Identities=13%  Similarity=0.131  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      ......+..|..++..|+|.+|+.+|++++..-+..    ..+.+.++.||...|+.++|+.+|++.. .+|.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~   82 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD----AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT   82 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC----HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            345567889999999999999999999999876543    6788899999999999999999999985 4554

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.48  E-value=0.00042  Score=53.91  Aligned_cols=65  Identities=22%  Similarity=0.208  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      ...|..|..++..|+|.+|+..|++|+..-+..    .++.+.+++||...|+.++|+..|++.. ..|+
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~   83 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPER----EEAWRSLGLTQAENEKDGLAIIALNHARMLDPK   83 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            346889999999999999999999999987664    5678889999999999999999999985 5664

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.48  E-value=0.00024  Score=62.04  Aligned_cols=70  Identities=16%  Similarity=0.057  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccC-------c-cchHHHHHHHHHHHHhcCChHHHHHHHHHHh-c
Q 017641          277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK-------S-ELHGLAALQWSICQDSLHRPKEARIMYEKLQ-S  346 (368)
Q Consensus       277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~-------S-~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-s  346 (368)
                      .+++...+..|..+|..|+|.+|+..|++|+++.+..       . .+...+-..++.||..+||.+||+..|.+.. .
T Consensus         8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l   86 (159)
T 2hr2_A            8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY   86 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            4578889999999999999999999999999999872       1 1123377779999999999999999999885 5

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.48  E-value=0.0003  Score=58.72  Aligned_cols=67  Identities=12%  Similarity=0.259  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHH----------------HHHHHHhcCChHHHHHHHHH
Q 017641          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQ----------------WSICQDSLHRPKEARIMYEK  343 (368)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLw----------------LAiAydA~GR~~EAiaLYkk  343 (368)
                      ++..+..|..++..|+|.+|+.+|++++..-|.+    .++.+|                ++.||...|+.++|+..|++
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~   79 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR----TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKE   79 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH----HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            4567899999999999999999999999886654    346677                99999999999999999999


Q ss_pred             Hh-cCCCH
Q 017641          344 LQ-SHPNA  350 (368)
Q Consensus       344 L~-sHP~~  350 (368)
                      .. .+|+-
T Consensus        80 al~~~p~~   87 (208)
T 3urz_A           80 LLQKAPNN   87 (208)
T ss_dssp             HHHHCTTC
T ss_pred             HHHHCCCC
Confidence            85 67753

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=97.44  E-value=0.00097  Score=54.79  Aligned_cols=58  Identities=17%  Similarity=0.325  Sum_probs=26.6

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcc-cCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMV-FKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~-~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (368)
                      .+..|..++..|+|.+|+.+|+++++.-+ ...    .+..+++.||...|+.++|+..|++.
T Consensus        10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~a   68 (228)
T 4i17_A           10 LKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS----VTAYNCGVCADNIKKYKEAADYFDIA   68 (228)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH----HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc----HHHHHHHHHHHHhhcHHHHHHHHHHH
Confidence            34444444555555555555555444443 111    33444444444444444444444444

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=97.41  E-value=0.0009  Score=52.97  Aligned_cols=64  Identities=17%  Similarity=0.160  Sum_probs=51.8

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (368)
                      -+..|..++.+|+|.+|+.+|++|++.-|.+    .++...++.||...|+.++|+..|+++. .+|+.
T Consensus         8 y~~lG~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~   72 (184)
T 3vtx_A            8 YMDIGDKKRTKGDFDGAIRAYKKVLKADPNN----VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS   72 (184)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh
Confidence            4567899999999999999999998876654    4677888999999999999999998885 45543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.38  E-value=0.0022  Score=45.51  Aligned_cols=67  Identities=13%  Similarity=0.121  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      .++..+..|..++..|+|.+|+.+|++++..-+..    ..+.+.++.||-..|+.++|+..|++.. .+|.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   70 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN----HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD   70 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence            45667889999999999999999999999886654    5678889999999999999999999985 5664

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.38  E-value=0.0004  Score=67.26  Aligned_cols=125  Identities=19%  Similarity=0.137  Sum_probs=85.4

Q ss_pred             ccccccCCC--------CCCccccCCC-------cccCCCCccC-----cHHHHHHHHHHHHHHHHHHHh----------
Q 017641          217 STWGVFPRP--------GNISKTFGGG-------RTIRPGDVLE-----TAEARAAKEERTRQLLAAYKK----------  266 (368)
Q Consensus       217 sTWGvFPRP--------~NISkayGGG-------R~IrpGe~lE-----teEEkaar~~rtke~LaaYrk----------  266 (368)
                      ..+|+||..        .|....|.|+       |.|++|++|.     ...-...|.+   .+...|..          
T Consensus       194 ~g~~l~~~~s~~NHsC~PN~~~~~~~~~~~~~a~r~I~~GeEl~isY~~~~~~~~~R~~---~L~~~~~F~C~C~~C~~~  270 (429)
T 3qwp_A          194 VGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRK---QLRDQYCFECDCFRCQTQ  270 (429)
T ss_dssp             EEEEECTTGGGCEECSSCSEEEEEETTEEEEEECSCBCTTCEEEECCSCSSCCHHHHHH---HHHHHHCCCCCSHHHHHT
T ss_pred             ceEEEchhhHhhCcCCCCCeEEEEeCCEEEEEEeeeECCCCEEEEEecCCCCCHHHHHH---HHhccCCeEeeCCCCCCC
Confidence            358888864        3677778777       7899999862     1111222322   23333310          


Q ss_pred             ---hcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhh----cccCccchHHHHHHHHHHHHhcCChHHHHH
Q 017641          267 ---SVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNK----MVFKSELHGLAALQWSICQDSLHRPKEARI  339 (368)
Q Consensus       267 ---~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~----v~~~S~LGGeaqLwLAiAydA~GR~~EAia  339 (368)
                         ..=+..++.....+++++..-..+...|+|.+|+++|+++++.    +......-..+--.|+.+|...|+.++|+.
T Consensus       271 ~~~~~~~~~~~~~~~~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~  350 (429)
T 3qwp_A          271 DKDADMLTGDEQVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALF  350 (429)
T ss_dssp             TTHHHHTCSCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             cccccccccchhhhHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHH
Confidence               0002334445566788888889999999999999999999865    333333336777789999999999999999


Q ss_pred             HHHHH
Q 017641          340 MYEKL  344 (368)
Q Consensus       340 LYkkL  344 (368)
                      +|++.
T Consensus       351 ~~~~~  355 (429)
T 3qwp_A          351 YGTRT  355 (429)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99875

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=97.37  E-value=0.0011  Score=55.53  Aligned_cols=86  Identities=19%  Similarity=0.122  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCCh
Q 017641          255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP  334 (368)
Q Consensus       255 ~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~  334 (368)
                      .+..+.+..|++-.  .++|...   ...+..|..++..|+|.+|+..|++|+++-  .   ..++.+.++.||...|+.
T Consensus        98 g~~~~A~~~~~~al--~~~P~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~---~~~~~~~la~~~~~~g~~  167 (217)
T 2pl2_A           98 GYLEQALSVLKDAE--RVNPRYA---PLHLQRGLVYALLGERDKAEASLKQALALE--D---TPEIRSALAELYLSMGRL  167 (217)
T ss_dssp             HHHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHHHTCH
T ss_pred             cCHHHHHHHHHHHH--HhCcccH---HHHHHHHHHHHHcCChHHHHHHHHHHHhcc--c---chHHHHHHHHHHHHcCCH
Confidence            56677777777554  4556543   335778999999999999999999999876  2   357788999999999999


Q ss_pred             HHHHHHHHHHh-cCCCH
Q 017641          335 KEARIMYEKLQ-SHPNA  350 (368)
Q Consensus       335 ~EAiaLYkkL~-sHP~~  350 (368)
                      ++|+..|+++. .+|+-
T Consensus       168 ~~A~~~~~~al~~~P~~  184 (217)
T 2pl2_A          168 DEALAQYAKALEQAPKD  184 (217)
T ss_dssp             HHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence            99999999985 67754

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.36  E-value=0.0011  Score=49.65  Aligned_cols=66  Identities=14%  Similarity=0.238  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      ++..+..|..++..|+|.+|+.+|++++..-+..    ..+.+.++.||-..|+.++|+..|++.. .+|+
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~   75 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADCRRALELDGQ   75 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch
Confidence            4457889999999999999999999999987654    5688889999999999999999999985 5665

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.35  E-value=0.0026  Score=45.78  Aligned_cols=69  Identities=17%  Similarity=0.193  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      ...+...+..|..++..|+|.+|+.+|++++...+..    ..+.+.++.||-..|+.++|+..|++.. .+|.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   78 (131)
T 2vyi_A            9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN----AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA   78 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc
Confidence            3456678889999999999999999999999886543    5678889999999999999999999985 5665

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=97.32  E-value=0.00096  Score=52.82  Aligned_cols=63  Identities=17%  Similarity=0.059  Sum_probs=54.4

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCC
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHPN  349 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~  349 (368)
                      .+..|..++..|+|.+|+..|+++++.-+..    ..+...++.||...|+.++|+..|++. +.+|+
T Consensus       110 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  173 (184)
T 3vtx_A          110 YYKLGLVYDSMGEHDKAIEAYEKTISIKPGF----IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK  173 (184)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHHhcchh----hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence            5667999999999999999999999986654    567888999999999999999999986 46664

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=97.29  E-value=0.00078  Score=55.64  Aligned_cols=64  Identities=11%  Similarity=-0.046  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCc--cchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      ..+..|..++..|+|.+|+.+|++|++......  ..-..+...++.+|...|+.++|+..|++..
T Consensus        45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  110 (338)
T 3ro2_A           45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL  110 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            334445555555555555555555544433221  1223344445555555555555555555544

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.28  E-value=0.0016  Score=51.34  Aligned_cols=57  Identities=14%  Similarity=0.108  Sum_probs=38.4

Q ss_pred             cCchhhhhHHHHHHHhhc--------ccC------ccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          293 SGKLKEALPFYEKVMNKM--------VFK------SELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       293 rGkYr~AV~~lEkA~~~v--------~~~------S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      .|+|.+|+.+|++|+..+        +..      ......+.+.++.||-.+|+.++|+..|++.. .+|+
T Consensus        24 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~   95 (162)
T 3rkv_A           24 QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREET   95 (162)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc
Confidence            467777777777777761        111      23445566778888888888888888888774 3454

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.28  E-value=0.002  Score=54.33  Aligned_cols=62  Identities=19%  Similarity=0.273  Sum_probs=35.0

Q ss_pred             HHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      +..|..++..|+|.+|+..|+++++..+....+-..+.+.++.||...|+.++|+.+|+++.
T Consensus       238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  299 (359)
T 3ieg_A          238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVL  299 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            34455566666666666666666655555444444444555555555555555555555553

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.25  E-value=0.004  Score=47.33  Aligned_cols=72  Identities=8%  Similarity=-0.023  Sum_probs=60.1

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          274 PKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       274 ~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      ......++..+..|..++..|+|.+|+.+|++++..-+..    ..+.+.++.||-..|+.++|+..|++.. .+|.
T Consensus         7 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   79 (166)
T 1a17_A            7 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELDKK   79 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            3445677788899999999999999999999999876654    6778889999999999999999999875 4564

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.25  E-value=0.0039  Score=44.47  Aligned_cols=65  Identities=20%  Similarity=0.186  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (368)
                      ..+..|..++..|+|.+|+.+|++++...+..    ..+.+.++.+|...|+.++|+..|+++. .+|+.
T Consensus        45 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  110 (125)
T 1na0_A           45 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN  110 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            45677999999999999999999999875543    4567788999999999999999999975 56654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=97.24  E-value=0.00086  Score=59.09  Aligned_cols=67  Identities=13%  Similarity=0.105  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (368)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (368)
                      ..+...+..|..++..|+|.+|+.+|++|++.-+.....-+.+...++.+|...|+.++|+.+|++.
T Consensus        46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  112 (411)
T 4a1s_A           46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD  112 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3344444445555555555555555555544433333333344444445555555555555544443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.21  E-value=0.003  Score=52.63  Aligned_cols=62  Identities=18%  Similarity=0.133  Sum_probs=55.4

Q ss_pred             HHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641          285 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (368)
Q Consensus       285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (368)
                      ..|..++..|+|.+|+..|++|+++-|..    ..+.+.++.||...|+.++|+..|+++. .+|+-
T Consensus        59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~  121 (208)
T 3urz_A           59 ELALAYKKNRNYDKAYLFYKELLQKAPNN----VDCLEACAEMQVCRGQEKDALRMYEKILQLEADN  121 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence            38999999999999999999999987765    4788899999999999999999999985 67763

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.21  E-value=0.0025  Score=45.44  Aligned_cols=65  Identities=22%  Similarity=0.205  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      ...+..|..++..|+|.+|+.+|++++..-+..    ..+.+.++.+|...|+.++|+.+|+++. .+|.
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~   75 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN   75 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc
Confidence            446778999999999999999999999876543    4677889999999999999999999985 4553

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.20  E-value=0.003  Score=50.76  Aligned_cols=90  Identities=11%  Similarity=0.038  Sum_probs=66.9

Q ss_pred             HHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCc------------cchHHHHHHH
Q 017641          257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS------------ELHGLAALQW  324 (368)
Q Consensus       257 tke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S------------~LGGeaqLwL  324 (368)
                      ..+.+..|++-.  .++|..   ....+..|..++..|+|.+|+.+|++|++..+.+.            .....+.+.+
T Consensus        53 ~~~A~~~~~~al--~~~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (213)
T 1hh8_A           53 MTEAEKAFTRSI--NRDKHL---AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNI  127 (213)
T ss_dssp             HHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHH
T ss_pred             HHHHHHHHHHHH--HhCccc---hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHH
Confidence            344455554433  233433   23467789999999999999999999999877644            2345888999


Q ss_pred             HHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 017641          325 SICQDSLHRPKEARIMYEKLQ-SHPNAL  351 (368)
Q Consensus       325 AiAydA~GR~~EAiaLYkkL~-sHP~~e  351 (368)
                      +.||...|+.++|+..|++.. .+|...
T Consensus       128 ~~~~~~~g~~~~A~~~~~~al~~~p~~~  155 (213)
T 1hh8_A          128 AFMYAKKEEWKKAEEQLALATSMKSEPR  155 (213)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             HHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence            999999999999999999975 567543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.20  E-value=0.0035  Score=51.02  Aligned_cols=74  Identities=14%  Similarity=0.012  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC-HHHHHHHHH
Q 017641          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN-ALVSKRARQ  358 (368)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~-~eVrKQAkr  358 (368)
                      ...+..|..++..|+|.+|+.+|++|++.-+..    ..+.+.++.||...|+.++|+..|++.. .+|. ..+...-..
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  164 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN----VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL  164 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence            456678999999999999999999999986543    5788999999999999999999999975 5664 444443333

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=97.16  E-value=0.0017  Score=52.48  Aligned_cols=63  Identities=13%  Similarity=0.076  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      .+++..+..|..++..|+|.+|+.+|+++++.- .    ...+.+.++.||...|+.++|+..|+++.
T Consensus         3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~   65 (258)
T 3uq3_A            3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-K----DITYLNNRAAAEYEKGEYETAISTLNDAV   65 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C----CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c----cHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            467788999999999999999999999999886 2    25788899999999999999999999985

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.15  E-value=0.0019  Score=47.78  Aligned_cols=65  Identities=12%  Similarity=0.010  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch--HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH--GLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG--GeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      ...+..|..++..|+|.+|+.+|+++++.........  +.+...++.+|...|+.++|+..|++..
T Consensus        50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  116 (164)
T 3ro3_A           50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL  116 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            3455567777777888888888887777776543222  4556667777777888888888777777

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=97.13  E-value=0.0013  Score=56.85  Aligned_cols=88  Identities=13%  Similarity=0.013  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHhhcCCcCChhh-HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCc--cchHHHHHHHHHHHHhcC
Q 017641          256 RTRQLLAAYKKSVGLNVDPKL-KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLH  332 (368)
Q Consensus       256 rtke~LaaYrk~~Gl~Vd~~~-~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~G  332 (368)
                      +..+.+..|++-..  ++|.. ...+...+..|..++..|+|.+|+.+|++|++......  ..-..+...++.+|...|
T Consensus        24 ~~~~A~~~~~~al~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  101 (406)
T 3sf4_A           24 DCRAGVSFFEAAVQ--VGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG  101 (406)
T ss_dssp             CHHHHHHHHHHHHH--HCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcC
Confidence            34455555554432  23332 22334455556666666666666666666655543322  223445555666666666


Q ss_pred             ChHHHHHHHHHHh
Q 017641          333 RPKEARIMYEKLQ  345 (368)
Q Consensus       333 R~~EAiaLYkkL~  345 (368)
                      +.++|+..|++..
T Consensus       102 ~~~~A~~~~~~al  114 (406)
T 3sf4_A          102 NFDEAIVCCQRHL  114 (406)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            6666666666665

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.12  E-value=0.0011  Score=61.85  Aligned_cols=75  Identities=12%  Similarity=0.023  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC-CHHHHHHHHHH
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP-NALVSKRARQF  359 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP-~~eVrKQAkrL  359 (368)
                      ..+..|..++..|+|.+|+.+|++|+++-+.+    ..+.+.++.||..+|+.++|+..|++.. ..| +..+...-..+
T Consensus       275 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~  350 (370)
T 1ihg_A          275 CVLNIGACKLKMSDWQGAVDSCLEALEIDPSN----TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV  350 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCchh----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            44556888899999999999999999876543    5778889999999999999999999874 456 45555544444


Q ss_pred             h
Q 017641          360 M  360 (368)
Q Consensus       360 l  360 (368)
                      +
T Consensus       351 ~  351 (370)
T 1ihg_A          351 K  351 (370)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.11  E-value=0.0076  Score=57.33  Aligned_cols=75  Identities=12%  Similarity=-0.063  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHhcCch-hhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHH
Q 017641          281 EKALKDGDSLMDSGKL-KEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQ  358 (368)
Q Consensus       281 eea~~~Gk~AmerGkY-r~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkr  358 (368)
                      +..+..|..++..|+| .+|+.+|++|+++-+..    ..+...|+.||-..|+.++|+..|++.. ..|+..+...-..
T Consensus       103 ~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~  178 (474)
T 4abn_A          103 QALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL----VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSM  178 (474)
T ss_dssp             HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence            3456679999999999 99999999999986653    5788899999999999999999999985 6888544433333


Q ss_pred             H
Q 017641          359 F  359 (368)
Q Consensus       359 L  359 (368)
                      +
T Consensus       179 ~  179 (474)
T 4abn_A          179 V  179 (474)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.09  E-value=0.0019  Score=57.91  Aligned_cols=81  Identities=11%  Similarity=0.077  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCCh
Q 017641          255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP  334 (368)
Q Consensus       255 ~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~  334 (368)
                      .+..+.+..|.+-.-  ++|.    ....+..|..++..|+|.+|+..|+++++.-+..    ..+.+.++.||...|+.
T Consensus        20 g~~~~A~~~~~~al~--~~p~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~   89 (514)
T 2gw1_A           20 KKYDDAIKYYNWALE--LKED----PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY----SKVLLRRASANEGLGKF   89 (514)
T ss_dssp             SCHHHHHHHHHHHHH--HCCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCH
T ss_pred             ccHHHHHHHHHHHHh--cCcc----HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH----HHHHHHHHHHHHHHhhH
Confidence            344555555554442  2332    3345556777777777777777777777654433    25566677777777777


Q ss_pred             HHHHHHHHHHh
Q 017641          335 KEARIMYEKLQ  345 (368)
Q Consensus       335 ~EAiaLYkkL~  345 (368)
                      ++|+..|+++.
T Consensus        90 ~~A~~~~~~~~  100 (514)
T 2gw1_A           90 ADAMFDLSVLS  100 (514)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777777764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.08  E-value=0.0021  Score=56.68  Aligned_cols=81  Identities=12%  Similarity=0.081  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCCh
Q 017641          255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP  334 (368)
Q Consensus       255 ~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~  334 (368)
                      .+..+.+..|++-+  .++|.   .....+..|..++..|+|.+|+..|++|+.+-+.+    ..+.+.++.+|...|+.
T Consensus        18 g~~~~A~~~~~~al--~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~   88 (281)
T 2c2l_A           18 RKYPEAAACYGRAI--TRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELDGQS----VKAHFFLGQCQLEMESY   88 (281)
T ss_dssp             TCHHHHHHHHHHHH--HHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC----HHHHHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHHHHHH--HhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCH
Confidence            34455555555333  22332   24445556777777777777777777777664433    35566777777777777


Q ss_pred             HHHHHHHHHH
Q 017641          335 KEARIMYEKL  344 (368)
Q Consensus       335 ~EAiaLYkkL  344 (368)
                      ++|+..|++.
T Consensus        89 ~~A~~~~~~a   98 (281)
T 2c2l_A           89 DEAIANLQRA   98 (281)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777777765

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.07  E-value=0.0033  Score=59.07  Aligned_cols=99  Identities=16%  Similarity=0.094  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHh
Q 017641          251 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS  330 (368)
Q Consensus       251 aar~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA  330 (368)
                      ..+..|..+.+..+++.... .|+.  ....-.|-.|..+-..|++.+|+.+|++|...- ..-..--++++++++||..
T Consensus       145 ~~~~~r~~dA~~~l~~a~~~-~d~~--~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~-~~P~~~~da~~~~glaL~~  220 (282)
T 4f3v_A          145 YGAAERWTDVIDQVKSAGKW-PDKF--LAGAAGVAHGVAAANLALFTEAERRLTEANDSP-AGEACARAIAWYLAMARRS  220 (282)
T ss_dssp             HHHTTCHHHHHHHHTTGGGC-SCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST-TTTTTHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHhhcc-CCcc--cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC-CCccccHHHHHHHHHHHHH
Confidence            45556677777777644322 2443  233456888999999999999999999997321 0011256799999999999


Q ss_pred             cCChHHHHHHHHHHh-cCCCHHHH
Q 017641          331 LHRPKEARIMYEKLQ-SHPNALVS  353 (368)
Q Consensus       331 ~GR~~EAiaLYkkL~-sHP~~eVr  353 (368)
                      .||.+||+++|+++. .+|..++.
T Consensus       221 lGr~deA~~~l~~a~a~~P~~~~~  244 (282)
T 4f3v_A          221 QGNESAAVALLEWLQTTHPEPKVA  244 (282)
T ss_dssp             HTCHHHHHHHHHHHHHHSCCHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCcHHHH
Confidence            999999999999996 79984433

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.06  E-value=0.0018  Score=53.52  Aligned_cols=66  Identities=9%  Similarity=-0.072  Sum_probs=44.4

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      .+..|..++..|+|.+|+.+|+++++ .+.+..+-+.+.+.++.||...|+.++|+..|++.. .+|+
T Consensus        40 ~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~  106 (272)
T 3u4t_A           40 YNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT  106 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc
Confidence            44556677777777777777777777 555556666666777777777777777777777764 3443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.06  E-value=0.0022  Score=56.55  Aligned_cols=71  Identities=15%  Similarity=0.182  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHH
Q 017641          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSK  354 (368)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrK  354 (368)
                      .+..+..|..++..|++.+|+..|++++..-|.+    ..+.+.|+.+|-..||.++|+.+|+++. .+|+.....
T Consensus       117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~  188 (287)
T 3qou_A          117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN----GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQG  188 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHH
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc----hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHH
Confidence            4557899999999999999999999999988866    4788999999999999999999999985 688765443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=97.04  E-value=0.0022  Score=53.80  Aligned_cols=65  Identities=20%  Similarity=0.142  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (368)
                      ..+..|..++..|+|.+|+..|++|+..-|..    ..+..+++.||...|+.++|+..|++.. ..|+-
T Consensus         7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~   72 (217)
T 2pl2_A            7 NPLRLGVQLYALGRYDAALTLFERALKENPQD----PEALYWLARTQLKLGLVNPALENGKTLVARTPRY   72 (217)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            45778999999999999999999999887665    5678899999999999999999999985 56653

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.00  E-value=0.0028  Score=53.43  Aligned_cols=85  Identities=24%  Similarity=0.231  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCCh
Q 017641          255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP  334 (368)
Q Consensus       255 ~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~  334 (368)
                      .+..+.+..|++-.  ..+|.   .....+..|..++..|+|.+|+.+|+++++.-+..    ..+.+.++.||...|+.
T Consensus        17 g~~~~A~~~~~~~l--~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~   87 (359)
T 3ieg_A           17 GQLADALSQFHAAV--DGDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF----TAARLQRGHLLLKQGKL   87 (359)
T ss_dssp             TCHHHHHHHHHHHH--HHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCH
T ss_pred             CCHHHHHHHHHHHH--hhCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc----chHHHHHHHHHHHcCCh
Confidence            34455555565443  22332   24556667888888888888888888888775443    36677788888888888


Q ss_pred             HHHHHHHHHHh-cCC
Q 017641          335 KEARIMYEKLQ-SHP  348 (368)
Q Consensus       335 ~EAiaLYkkL~-sHP  348 (368)
                      ++|+.+|+++. .+|
T Consensus        88 ~~A~~~~~~~~~~~~  102 (359)
T 3ieg_A           88 DEAEDDFKKVLKSNP  102 (359)
T ss_dssp             HHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHhcCC
Confidence            88888888875 466

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=97.00  E-value=0.0029  Score=51.11  Aligned_cols=95  Identities=13%  Similarity=0.079  Sum_probs=69.9

Q ss_pred             HHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch---HHHHHHHHHHHHhcCC
Q 017641          257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---GLAALQWSICQDSLHR  333 (368)
Q Consensus       257 tke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG---GeaqLwLAiAydA~GR  333 (368)
                      ..+.+..|++-..++ +.     ....+..|..++..|+|.+|+.+|+++++..+....-.   ..+.+.++.||...|+
T Consensus        21 ~~~A~~~~~~a~~~~-~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   94 (258)
T 3uq3_A           21 FDEAIEHYNKAWELH-KD-----ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGD   94 (258)
T ss_dssp             HHHHHHHHHHHHHHS-CC-----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhh-cc-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHccc
Confidence            444555555444333 11     23467789999999999999999999999876543222   6888899999999999


Q ss_pred             hHHHHHHHHHHh-cCCCHHHHHHHH
Q 017641          334 PKEARIMYEKLQ-SHPNALVSKRAR  357 (368)
Q Consensus       334 ~~EAiaLYkkL~-sHP~~eVrKQAk  357 (368)
                      .++|+..|++.. .+|...+-.+..
T Consensus        95 ~~~A~~~~~~a~~~~~~~~~~~~~~  119 (258)
T 3uq3_A           95 LKKTIEYYQKSLTEHRTADILTKLR  119 (258)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCchhHHHHHHh
Confidence            999999999986 577766544433

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=96.99  E-value=0.0087  Score=49.10  Aligned_cols=59  Identities=8%  Similarity=-0.120  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (368)
                      ..+..|..++..|+|.+|+.+|++|+..-+..    ..+.+.++.+|-..|+.++|+.+|++.
T Consensus        45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~a  103 (275)
T 1xnf_A           45 LLYERGVLYDSLGLRALARNDFSQALAIRPDM----PEVFNYLGIYLTQAGNFDAAYEAFDSV  103 (275)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            34445555555555555555555555543321    234444555555555555555555554

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=96.99  E-value=0.0057  Score=49.70  Aligned_cols=69  Identities=12%  Similarity=0.037  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcc----cCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 017641          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMV----FKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS  346 (368)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~----~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s  346 (368)
                      ..+...+..|..++..|+|.+|+.+|++|+....    ........+...++.+|...|+.++|+.+|++...
T Consensus        83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  155 (283)
T 3edt_B           83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE  155 (283)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3455677789999999999999999999988752    22455678888999999999999999999998854

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=96.98  E-value=0.002  Score=58.59  Aligned_cols=93  Identities=16%  Similarity=0.072  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHhhcCCcCChh----------hHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHH
Q 017641          254 EERTRQLLAAYKKSVGLNVDPK----------LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQ  323 (368)
Q Consensus       254 ~~rtke~LaaYrk~~Gl~Vd~~----------~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLw  323 (368)
                      ..+..+.+..|++-+.++-+..          ....+...+..|..++..|+|.+|+.+|++|+++-+.+    ..+.+.
T Consensus       160 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~  235 (336)
T 1p5q_A          160 EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN----EKGLSR  235 (336)
T ss_dssp             HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHH
Confidence            3455667777776654433321          01124556677888899999999999999998886654    467788


Q ss_pred             HHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641          324 WSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (368)
Q Consensus       324 LAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (368)
                      ++.||..+|+.++|+..|++.. .+|+-
T Consensus       236 lg~~~~~~g~~~~A~~~~~~al~l~P~~  263 (336)
T 1p5q_A          236 RGEAHLAVNDFELARADFQKVLQLYPNN  263 (336)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence            8999999999999999998874 56643

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=96.97  E-value=0.0023  Score=56.91  Aligned_cols=67  Identities=21%  Similarity=0.305  Sum_probs=44.9

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCC
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHPN  349 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~  349 (368)
                      .+..|..++..|+|.+|+.+|+++++..+....+-..+...++.+|...|+.++|+.+|++. ..+|+
T Consensus       260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~  327 (450)
T 2y4t_A          260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD  327 (450)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            34557777777777777777777777665544444556666777777777777777777775 34553

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=96.97  E-value=0.0015  Score=59.63  Aligned_cols=73  Identities=26%  Similarity=0.263  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCcc--chH-----------HHHHHHHHHHHhcCChHHHHHHHHH
Q 017641          277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE--LHG-----------LAALQWSICQDSLHRPKEARIMYEK  343 (368)
Q Consensus       277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~--LGG-----------eaqLwLAiAydA~GR~~EAiaLYkk  343 (368)
                      ...++..+..|..+|..|+|.+|+.+|++|+...+....  .-|           .+.+.++.||-..|+.++|+..|++
T Consensus       176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~  255 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI  255 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            345566777888888888888888888888877665431  112           2667788888888888888888887


Q ss_pred             Hh-cCCC
Q 017641          344 LQ-SHPN  349 (368)
Q Consensus       344 L~-sHP~  349 (368)
                      .. .+|+
T Consensus       256 al~~~p~  262 (338)
T 2if4_A          256 VLTEEEK  262 (338)
T ss_dssp             HHHHCTT
T ss_pred             HHHhCCC
Confidence            64 4553

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=96.96  E-value=0.002  Score=61.35  Aligned_cols=63  Identities=13%  Similarity=0.071  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP  348 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP  348 (368)
                      ..+..|..++..|+|.+|+.+|++|+.+-+.+    -.+.+.++.||-.+|+.++|+..|++.. .+|
T Consensus       319 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P  382 (457)
T 1kt0_A          319 AFLNLAMCYLKLREYTKAVECCDKALGLDSAN----EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP  382 (457)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            34455666666666666666666666665543    3455666666667777777776666653 344

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=96.95  E-value=0.0025  Score=55.52  Aligned_cols=92  Identities=16%  Similarity=0.155  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCcCChh-------hHH--HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch---HH
Q 017641          252 AKEERTRQLLAAYKKSVGLNVDPK-------LKS--ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---GL  319 (368)
Q Consensus       252 ar~~rtke~LaaYrk~~Gl~Vd~~-------~~~--e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG---Ge  319 (368)
                      .+..+..+.+..|++-.  .++|.       ...  .+..-+..|..+..-|+|.+|+..|++|+++.+...++.   +.
T Consensus        22 ~~~g~~eeAi~~Y~kAL--~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~   99 (159)
T 2hr2_A           22 LVAGEYDEAAANCRRAM--EISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK   99 (159)
T ss_dssp             HHHTCHHHHHHHHHHHH--HHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred             HHCCCHHHHHHHHHHHH--hhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHH
Confidence            34556788899998766  44444       221  223566779999999999999999999999833333332   44


Q ss_pred             HH----HHHHHHHHhcCChHHHHHHHHHHh
Q 017641          320 AA----LQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       320 aq----LwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      +-    ..++.||..+||++||+.-|++..
T Consensus       100 A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl  129 (159)
T 2hr2_A          100 LWISAVYSRALALDGLGRGAEAMPEFKKVV  129 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence            55    678999999999999999999874

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=96.94  E-value=0.0074  Score=49.49  Aligned_cols=87  Identities=7%  Similarity=0.042  Sum_probs=59.1

Q ss_pred             HHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccc---hHHHHHHHHHHHHhcCCh
Q 017641          258 RQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL---HGLAALQWSICQDSLHRP  334 (368)
Q Consensus       258 ke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~L---GGeaqLwLAiAydA~GR~  334 (368)
                      .+.+..|.+-.  .++|..   ....+..|..++..|+|.+|+..|++++..-+.+..+   -+.+.+.++.+|...|+.
T Consensus        59 ~~A~~~~~~al--~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~  133 (228)
T 4i17_A           59 KEAADYFDIAI--KKNYNL---ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNI  133 (228)
T ss_dssp             HHHHHHHHHHH--HTTCSH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHH--HhCcch---HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccH
Confidence            34444454433  334442   2335667888888888888888888888877766533   235566788888888888


Q ss_pred             HHHHHHHHHHh-cCCC
Q 017641          335 KEARIMYEKLQ-SHPN  349 (368)
Q Consensus       335 ~EAiaLYkkL~-sHP~  349 (368)
                      ++|+..|++.. .+|+
T Consensus       134 ~~A~~~~~~al~~~p~  149 (228)
T 4i17_A          134 EKAEENYKHATDVTSK  149 (228)
T ss_dssp             HHHHHHHHHHTTSSCH
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            88888888875 4665

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=96.93  E-value=0.0035  Score=46.31  Aligned_cols=63  Identities=14%  Similarity=0.043  Sum_probs=38.4

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcccCcc--chHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE--LHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~--LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      .+..|..++..|+|.+|+.+|+++++.......  .-..+...++.+|...|+.++|+..|++..
T Consensus        92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  156 (164)
T 3ro3_A           92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  156 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            344466666667777777777776666554432  224455556666667777777776666654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=96.91  E-value=0.0021  Score=53.10  Aligned_cols=63  Identities=17%  Similarity=0.169  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHP  348 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP  348 (368)
                      ..+..|..++..|+|.+|+.+|+++++.-+...    .+.+.++.||-..|+.++|+..|+++...|
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~   67 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSP----YIYNRRAVCYYELAKYDLAQKDIETYFSKV   67 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCS----TTHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcc
Confidence            467889999999999999999999998876543    467889999999999999999999997644

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=96.90  E-value=0.0049  Score=46.85  Aligned_cols=56  Identities=18%  Similarity=0.234  Sum_probs=26.3

Q ss_pred             HHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641          285 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (368)
Q Consensus       285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (368)
                      ..|..++..|+|.+|+.+|++++...+..    ..+...++.+|...|+.++|+..|+++
T Consensus       115 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~  170 (186)
T 3as5_A          115 RLGVALDNLGRFDEAIDSFKIALGLRPNE----GKVHRAIAFSYEQMGRHEEALPHFKKA  170 (186)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHhcCccc----hHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            33444445555555555555544443222    234444455555555555555555443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=96.90  E-value=0.0067  Score=55.11  Aligned_cols=60  Identities=17%  Similarity=0.301  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHH-HHHHHHHh
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEA-RIMYEKLQ  345 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EA-iaLYkkL~  345 (368)
                      ..+..|..++..|+|.+|+..|++|+++-+.+.    .+...|+.||..+|+.++| ..+|+++-
T Consensus       232 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~----~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          232 GLSRRGEAHLAVNDFELARADFQKVLQLYPNNK----AAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345668888888888888888888888766543    5677788888888888888 56777663

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=96.90  E-value=0.0016  Score=52.33  Aligned_cols=68  Identities=16%  Similarity=0.202  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHH
Q 017641          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALV  352 (368)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eV  352 (368)
                      +..+..|..++..|+|.+|+..|++|++.-|.+    ..+.+.++.+|...|+.++|+.+|+++. .+|++.+
T Consensus         7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~   75 (176)
T 2r5s_A            7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSR----GDVKLAKADCLLETKQFELAQELLATIPLEYQDNSY   75 (176)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS----HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHH
Confidence            346788999999999999999999998876654    4678889999999999999999999985 5665544

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=96.89  E-value=0.0021  Score=51.71  Aligned_cols=85  Identities=13%  Similarity=0.067  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCC
Q 017641          254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR  333 (368)
Q Consensus       254 ~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR  333 (368)
                      ..+..+.+..|++-    +++    .....+..|..++..|+|.+|+.+|++|+..-+..    ..+.+.++.||-..|+
T Consensus        19 ~~~~~~A~~~~~~a----~~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~lg~~~~~~~~   86 (213)
T 1hh8_A           19 KKDWKGALDAFSAV----QDP----HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL----AVAYFQRGMLYYQTEK   86 (213)
T ss_dssp             TTCHHHHHHHHHTS----SSC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTC
T ss_pred             hCCHHHHHHHHHHH----cCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----hHHHHHHHHHHHHccc
Confidence            34556667777644    232    45667788999999999999999999998876543    4677788999999999


Q ss_pred             hHHHHHHHHHHh-cCCCH
Q 017641          334 PKEARIMYEKLQ-SHPNA  350 (368)
Q Consensus       334 ~~EAiaLYkkL~-sHP~~  350 (368)
                      .++|+..|++.. .+|..
T Consensus        87 ~~~A~~~~~~al~~~~~~  104 (213)
T 1hh8_A           87 YDLAIKDLKEALIQLRGN  104 (213)
T ss_dssp             HHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHHHHhCCCc
Confidence            999999998885 45543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=96.89  E-value=0.0058  Score=53.10  Aligned_cols=67  Identities=12%  Similarity=0.085  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHhh---cccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNK---MVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~---v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      .+...+..|..++..|+|.+|+.+|++|++.   .+....+...+...++.||...|+.++|+..|++..
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal  223 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI  223 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence            4556677899999999999999999999944   443434445788889999999999999999999864

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=96.89  E-value=0.0045  Score=50.29  Aligned_cols=68  Identities=10%  Similarity=0.118  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcc----cCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMV----FKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~----~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      ..+...+..|..++..|+|.+|+.+|+++++...    .....-..+...++.||...|+.++|+.+|++..
T Consensus       125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  196 (283)
T 3edt_B          125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL  196 (283)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3455567789999999999999999999998742    2245567888899999999999999999999885

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=96.89  E-value=0.0029  Score=57.47  Aligned_cols=62  Identities=13%  Similarity=0.118  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (368)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (368)
                      .++..+..|..++..|+|.+|+.+|++|+..-+.+    ..+.+.++.||-..|+.++|+..|+++
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a   85 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE----PVFYSNISACYISTGDLEKVIEFTTKA   85 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            33444445555555555555555555555444332    233444455555555555555555544

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=96.88  E-value=0.0038  Score=51.87  Aligned_cols=69  Identities=7%  Similarity=0.034  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhccc----CccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF----KSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~----~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      -..++..+..|..++..|+|.+|+.+|+++++....    ....-..+...++.+|-..|+.++|+.+|++..
T Consensus        24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al   96 (311)
T 3nf1_A           24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL   96 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            355666888999999999999999999999987643    345667888999999999999999999999875

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=96.87  E-value=0.006  Score=48.17  Aligned_cols=63  Identities=10%  Similarity=-0.018  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhc-CChHHHHHHHHHHhc
Q 017641          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL-HRPKEARIMYEKLQS  346 (368)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~-GR~~EAiaLYkkL~s  346 (368)
                      ....+..|..++..|+|.+|+.+|++++...+..    ..+.+.++.+|-.. |+.++|+.+|+++..
T Consensus        42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~  105 (225)
T 2vq2_A           42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS----AEINNNYGWFLCGRLNRPAESMAYFDKALA  105 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence            3445556888888899999999999988876543    45677788888888 999999999988865

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=96.85  E-value=0.0024  Score=56.38  Aligned_cols=72  Identities=15%  Similarity=-0.016  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch--HHHHHHHHHHHHhcCChHHHHHHHHHHhcCCC
Q 017641          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH--GLAALQWSICQDSLHRPKEARIMYEKLQSHPN  349 (368)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG--GeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~  349 (368)
                      ..+...+..|..++..|+|.+|+.+|++|+...+......  +.+.+.++.||-..|+.++|+..|++...+|.
T Consensus       153 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~  226 (307)
T 2ifu_A          153 QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPG  226 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCC
Confidence            3455667789999999999999999999999876554333  34566788899999999999999999765553

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=96.84  E-value=0.005  Score=57.55  Aligned_cols=58  Identities=16%  Similarity=0.070  Sum_probs=46.0

Q ss_pred             hcCchhhhhHHHHHHHhhccc------------CccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          292 DSGKLKEALPFYEKVMNKMVF------------KSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       292 erGkYr~AV~~lEkA~~~v~~------------~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      ..|+|.+|+.+|++|+.+++.            ....-..+.+.++.||-..|+.++|+..|++.. .+|+
T Consensus       235 ~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~  305 (370)
T 1ihg_A          235 KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS  305 (370)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence            367888888888888885544            345567788889999999999999999999985 5664

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=96.84  E-value=0.0077  Score=42.98  Aligned_cols=59  Identities=19%  Similarity=0.149  Sum_probs=37.4

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      .+..|..++..|++.+|+.+|++++..-+..    ..+.+.++.+|-..|+.++|+.+|+++.
T Consensus        38 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~   96 (136)
T 2fo7_A           38 WYNLGNAYYKQGDYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQGDYDEAIEYYQKAL   96 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc----hHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            3445666667777777777777766654332    3445566667777777777777776653

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=96.84  E-value=0.0096  Score=46.98  Aligned_cols=64  Identities=13%  Similarity=0.048  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 017641          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP  348 (368)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP  348 (368)
                      ...+..|..++..|+|.+|+.+|+++++..+..    ..+.+.++.+|...|+.++|+.+|+++. .+|
T Consensus       114 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  178 (225)
T 2vq2_A          114 IANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF----PPAFKELARTKMLAGQLGDADYYFKKYQSRVE  178 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            345677888888899999999998888876543    5667778888888899999998888874 455

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.80  E-value=0.004  Score=54.56  Aligned_cols=72  Identities=19%  Similarity=0.123  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch-H--HHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 017641          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH-G--LAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL  351 (368)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG-G--eaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e  351 (368)
                      ....+..|..++..|+|.+|+.+|++|++..+...... +  .+.+.+++||...|+.++|+..|++.. -+|.-.
T Consensus       158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  233 (292)
T 1qqe_A          158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA  233 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence            34466779999999999999999999999887665432 2  356778999999999999999999985 366543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=96.78  E-value=0.012  Score=44.74  Aligned_cols=58  Identities=14%  Similarity=0.102  Sum_probs=30.8

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (368)
                      .+..|..++..|++.+|+.+|++++...+..    ..+.+.++.+|...|+.++|+.+|+++
T Consensus        45 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~  102 (186)
T 3as5_A           45 ALHLGIAYVKTGAVDRGTELLERSLADAPDN----VKVATVLGLTYVQVQKYDLAVPLLIKV  102 (186)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            3445555555566666666665555543322    234445555555555555555555554

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=96.77  E-value=0.007  Score=49.56  Aligned_cols=60  Identities=12%  Similarity=-0.115  Sum_probs=46.8

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS  346 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s  346 (368)
                      .+..|..++..|+|.+|+.+|+++++.-+..    ..+.+.++.+|...|+.++|+.+|+++..
T Consensus        74 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~  133 (252)
T 2ho1_A           74 HAALAVVFQTEMEPKLADEEYRKALASDSRN----ARVLNNYGGFLYEQKRYEEAYQRLLEASQ  133 (252)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc----HHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            3455788888888888888888888775543    46777788888888888888888888855

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=96.77  E-value=0.0036  Score=54.54  Aligned_cols=90  Identities=11%  Similarity=0.048  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHh
Q 017641          251 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS  330 (368)
Q Consensus       251 aar~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA  330 (368)
                      ..+..+..+.+..|++-.  .++|..   ....+..|..++..|+|.+|+.+|++|++.-+..    ..+.+.++.||..
T Consensus        75 ~~~~g~~~~A~~~~~~al--~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~  145 (365)
T 4eqf_A           75 RLKEGDLPVTILFMEAAI--LQDPGD---AEAWQFLGITQAENENEQAAIVALQRCLELQPNN----LKALMALAVSYTN  145 (365)
T ss_dssp             HHHHTCHHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHH--HhCcCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHc
Confidence            344455566666666444  233322   4556666777778888888888888877765433    4566777777888


Q ss_pred             cCChHHHHHHHHHHh-cCCC
Q 017641          331 LHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       331 ~GR~~EAiaLYkkL~-sHP~  349 (368)
                      .|+.++|+.+|++.. .+|.
T Consensus       146 ~g~~~~A~~~~~~al~~~p~  165 (365)
T 4eqf_A          146 TSHQQDACEALKNWIKQNPK  165 (365)
T ss_dssp             TTCHHHHHHHHHHHHHHCHH
T ss_pred             cccHHHHHHHHHHHHHhCcc
Confidence            888888888887764 3443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=96.75  E-value=0.019  Score=46.99  Aligned_cols=65  Identities=15%  Similarity=0.031  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      ...+..|..++..|+|.+|+.+|+++++..+..    ..+.+.++.+|...|+.++|+.+|+++. .+|.
T Consensus       142 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  207 (252)
T 2ho1_A          142 RVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ----PSVALEMADLLYKEREYVPARQYYDLFAQGGGQ  207 (252)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            345667888889999999999999988876543    5667788888999999999999998875 3443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=96.72  E-value=0.011  Score=49.07  Aligned_cols=68  Identities=13%  Similarity=0.143  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccC----ccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK----SELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~----S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      ..+...+..|..++..|+|.+|+.+|+++++.....    ...-..+...++.||...|+.++|+.+|++..
T Consensus       151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  222 (311)
T 3nf1_A          151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL  222 (311)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            345567788999999999999999999999875432    45556788889999999999999999999986

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=96.69  E-value=0.013  Score=48.02  Aligned_cols=65  Identities=20%  Similarity=0.076  Sum_probs=56.0

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL  351 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e  351 (368)
                      .+..|..++..|+|.+|+.+|++|+..-+..    ..+.+.++.||-..|+.++|+..|+++. .+|+..
T Consensus        80 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  145 (275)
T 1xnf_A           80 FNYLGIYLTQAGNFDAAYEAFDSVLELDPTY----NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP  145 (275)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCccc----cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence            5667999999999999999999999987654    4788889999999999999999999985 466544

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=96.68  E-value=0.0066  Score=43.36  Aligned_cols=63  Identities=19%  Similarity=0.172  Sum_probs=52.9

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      .+..|..++..|++.+|+.+|++++..-+..    ..+...++.+|-..|+.++|+.+|+++. .+|.
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   67 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR   67 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc----hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence            4667899999999999999999998875432    4567778999999999999999999985 4554

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=96.67  E-value=0.011  Score=46.76  Aligned_cols=64  Identities=6%  Similarity=-0.076  Sum_probs=50.9

Q ss_pred             HHHHHHH-HHhcCch--hhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641          283 ALKDGDS-LMDSGKL--KEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (368)
Q Consensus       283 a~~~Gk~-AmerGkY--r~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (368)
                      .+..|.. ++..|+|  .+|+.+|++++..-+..    ..+.+.++.+|...|+.++|+..|+++. .+|..
T Consensus        81 ~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  148 (177)
T 2e2e_A           81 YAALATVLYYQASQHMTAQTRAMIDKALALDSNE----ITALMLLASDAFMQANYAQAIELWQKVMDLNSPR  148 (177)
T ss_dssp             HHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence            4566777 6788998  99999999998876654    3567788899999999999999998874 56654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=96.67  E-value=0.00035  Score=50.33  Aligned_cols=85  Identities=9%  Similarity=0.158  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCc--cchHHHHHHHHHHHHhcCC
Q 017641          256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHR  333 (368)
Q Consensus       256 rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR  333 (368)
                      +..+.+..|++-.  .++|..   ....+..|..++..|+|.+|+.+|++|+.+-+...  .+-+.+.+.++.||..+|+
T Consensus        19 ~~~~A~~~~~~al--~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~   93 (111)
T 2l6j_A           19 LYREAVHCYDQLI--TAQPQN---PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGS   93 (111)
T ss_dssp             CHHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHH--hcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHh
Confidence            4455566665444  345544   23467889999999999999999999999877652  2237788899999999999


Q ss_pred             hHHHHHHHHHHh
Q 017641          334 PKEARIMYEKLQ  345 (368)
Q Consensus       334 ~~EAiaLYkkL~  345 (368)
                      .++|+..|+++.
T Consensus        94 ~~~a~~~~~~~~  105 (111)
T 2l6j_A           94 VQIPVVEVDELP  105 (111)
T ss_dssp             CCCCSSSSSSCS
T ss_pred             HhhhHhHHHHhH
Confidence            999988877663

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.65  E-value=0.0077  Score=52.51  Aligned_cols=101  Identities=12%  Similarity=0.085  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCch----------hhhhHHHHHHHhhcccCccchHH
Q 017641          250 RAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKL----------KEALPFYEKVMNKMVFKSELHGL  319 (368)
Q Consensus       250 kaar~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkY----------r~AV~~lEkA~~~v~~~S~LGGe  319 (368)
                      ..+|..+..+.+..|+.-+  .++|..-+   .-+..|..+++.|+|          .+|+..|++|+++-|..    -.
T Consensus        11 ~~~r~~~feeA~~~~~~Ai--~l~P~~ae---a~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~----~~   81 (158)
T 1zu2_A           11 EFDRILLFEQIRQDAENTY--KSNPLDAD---NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK----DE   81 (158)
T ss_dssp             SHHHHHHHHHHHHHHHHHH--HHCTTCHH---HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC----HH
T ss_pred             HHHHHhHHHHHHHHHHHHH--HHCCCCHH---HHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc----HH
Confidence            4566777778888887655  45555432   355577777777765          59999999999998775    45


Q ss_pred             HHHHHHHHHHhcC-----------ChHHHHHHHHHHh-cCCCHHHHHHHHHH
Q 017641          320 AALQWSICQDSLH-----------RPKEARIMYEKLQ-SHPNALVSKRARQF  359 (368)
Q Consensus       320 aqLwLAiAydA~G-----------R~~EAiaLYkkL~-sHP~~eVrKQAkrL  359 (368)
                      +...|.+||.+.|           +.++|+..|++-. -.|+-..-++|.++
T Consensus        82 A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~  133 (158)
T 1zu2_A           82 AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM  133 (158)
T ss_dssp             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            6778999998875           8999999999975 68877766666554

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=96.65  E-value=0.0054  Score=63.41  Aligned_cols=85  Identities=16%  Similarity=0.237  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChH
Q 017641          256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK  335 (368)
Q Consensus       256 rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~  335 (368)
                      +..+.+..|++-.  .++|..-   +..+..|..+++.|+|.+|+++|++|+++-+..    .++...|+.+|...|+.+
T Consensus        58 ~~~eA~~~~~~Al--~l~P~~~---~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~----~~a~~~Lg~~~~~~g~~~  128 (723)
T 4gyw_A           58 KLQEALMHYKEAI--RISPTFA---DAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF----ADAHSNLASIHKDSGNIP  128 (723)
T ss_dssp             CHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHH
T ss_pred             CHHHHHHHHHHHH--HhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHH
Confidence            4455556665443  3444432   235566888888888888888888888775543    466777888888888888


Q ss_pred             HHHHHHHHHh-cCCC
Q 017641          336 EARIMYEKLQ-SHPN  349 (368)
Q Consensus       336 EAiaLYkkL~-sHP~  349 (368)
                      +|+..|++.. -+|+
T Consensus       129 eAi~~~~~Al~l~P~  143 (723)
T 4gyw_A          129 EAIASYRTALKLKPD  143 (723)
T ss_dssp             HHHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHHhCCC
Confidence            8888888763 5664

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=96.64  E-value=0.0074  Score=48.61  Aligned_cols=73  Identities=19%  Similarity=0.194  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHH
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQ  358 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkr  358 (368)
                      ..+..|..++..|+|.+|+.+|++++...+..    ..+.+.++.||...|+.++|+..|+++. .+|+-..-..+..
T Consensus       161 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~  234 (243)
T 2q7f_A          161 ARFQFGMCLANEGMLDEALSQFAAVTEQDPGH----ADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK  234 (243)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence            45678999999999999999999999886543    4577889999999999999999999985 6777655444433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=96.63  E-value=0.0086  Score=47.34  Aligned_cols=64  Identities=11%  Similarity=0.022  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHH-HHhcCCh--HHHHHHHHHHh-cCCC
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSIC-QDSLHRP--KEARIMYEKLQ-SHPN  349 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiA-ydA~GR~--~EAiaLYkkL~-sHP~  349 (368)
                      ..+..|..++..|+|.+|+.+|++++..-+.+    ..+.+.++.| |...|+.  ++|+.+|+++. .+|+
T Consensus        46 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~  113 (177)
T 2e2e_A           46 QWALLGEYYLWQNDYSNSLLAYRQALQLRGEN----AELYAALATVLYYQASQHMTAQTRAMIDKALALDSN  113 (177)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC----HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC
Confidence            46778999999999999999999999987764    5677889999 8899998  99999999985 5775

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=96.61  E-value=0.0075  Score=47.54  Aligned_cols=68  Identities=15%  Similarity=0.005  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCc---cchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS---ELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S---~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      ..+...+..|..++..|+|.+|+.+|++|++......   ..-+.+...++.+|-..|+.++|+..|++..
T Consensus        64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  134 (203)
T 3gw4_A           64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL  134 (203)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3445567789999999999999999999999855333   2456778889999999999999999998864

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=96.59  E-value=0.0077  Score=47.46  Aligned_cols=80  Identities=13%  Similarity=0.015  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch--HHHHHHHHHHHHhcCChHHHHHHHHHHh----cCCCHH
Q 017641          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH--GLAALQWSICQDSLHRPKEARIMYEKLQ----SHPNAL  351 (368)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG--GeaqLwLAiAydA~GR~~EAiaLYkkL~----sHP~~e  351 (368)
                      ..+...+..|..++..|+|.+|+.+|+++++.........  ..+...++.+|...|+.++|+..|++..    .+.+..
T Consensus       105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  184 (203)
T 3gw4_A          105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSE  184 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHH
Confidence            4455567789999999999999999999998765444333  4455889999999999999999998763    455554


Q ss_pred             HHHHHH
Q 017641          352 VSKRAR  357 (368)
Q Consensus       352 VrKQAk  357 (368)
                      ..-.+.
T Consensus       185 ~~~~~~  190 (203)
T 3gw4_A          185 AVNELM  190 (203)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            433333

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=96.56  E-value=0.0063  Score=62.91  Aligned_cols=88  Identities=18%  Similarity=0.203  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCC
Q 017641          254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR  333 (368)
Q Consensus       254 ~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR  333 (368)
                      .-+..+.++.|++-.  .++|..-   +..+..|..++..|+|.+|+.+|++|+++-+..    .++...|+.||...|+
T Consensus        22 ~G~~~eAi~~~~kAl--~l~P~~~---~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~----~~a~~nLg~~l~~~g~   92 (723)
T 4gyw_A           22 QGNIEEAVRLYRKAL--EVFPEFA---AAHSNLASVLQQQGKLQEALMHYKEAIRISPTF----ADAYSNMGNTLKEMQD   92 (723)
T ss_dssp             TTCHHHHHHHHHHHH--HHCSCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHHHH--HhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCC
Confidence            345667778887654  5566543   346778999999999999999999999886543    5788899999999999


Q ss_pred             hHHHHHHHHHHh-cCCCH
Q 017641          334 PKEARIMYEKLQ-SHPNA  350 (368)
Q Consensus       334 ~~EAiaLYkkL~-sHP~~  350 (368)
                      .++|+..|++.. -+|+-
T Consensus        93 ~~~A~~~~~kAl~l~P~~  110 (723)
T 4gyw_A           93 VQGALQCYTRAIQINPAF  110 (723)
T ss_dssp             HHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHhCCCC
Confidence            999999999874 57753

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=96.55  E-value=0.01  Score=51.70  Aligned_cols=67  Identities=18%  Similarity=0.160  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (368)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (368)
                      +...+..|..++..|+|.+|+.+|++++..-+..    ..+...++.||...|+.++|+.+|++.. .+|+.
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  132 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD----AEAWQFLGITQAENENEQAAIVALQRCLELQPNN  132 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence            3457889999999999999999999999987654    6778899999999999999999999985 57763

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=96.55  E-value=0.01  Score=52.78  Aligned_cols=68  Identities=24%  Similarity=0.156  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 017641          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL  351 (368)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e  351 (368)
                      ....+..|..++..|+|.+|+.+|+++++.-+..    ..+.+.++.||...|+.++|+.+|+++. ..|+..
T Consensus        60 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  128 (450)
T 2y4t_A           60 YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF----TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEN  128 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence            4455667899999999999999999999876543    5677889999999999999999999985 577654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=96.54  E-value=0.013  Score=55.95  Aligned_cols=87  Identities=14%  Similarity=0.078  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCC
Q 017641          254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR  333 (368)
Q Consensus       254 ~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR  333 (368)
                      ..+..+.+..|++-.  .++|..   .+..+..|..++..|+|.+|+.+|++|++.-+..    ..+.+.++.||...|+
T Consensus        36 ~g~~~~A~~~~~~al--~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~  106 (568)
T 2vsy_A           36 MGDTTAGEMAVQRGL--ALHPGH---PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH----PGIALWLGHALEDAGQ  106 (568)
T ss_dssp             HTCHHHHHHHHHHHH--TTSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHHHH--HhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCC
Confidence            345566677777655  345543   3346778999999999999999999999886554    5677889999999999


Q ss_pred             hHHHHHHHHHHh-cCCC
Q 017641          334 PKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       334 ~~EAiaLYkkL~-sHP~  349 (368)
                      .++|+..|++.. .+|+
T Consensus       107 ~~~A~~~~~~al~~~p~  123 (568)
T 2vsy_A          107 AEAAAAAYTRAHQLLPE  123 (568)
T ss_dssp             HHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHhCCC
Confidence            999999999974 5664

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=96.53  E-value=0.024  Score=48.77  Aligned_cols=90  Identities=13%  Similarity=0.109  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcC
Q 017641          253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH  332 (368)
Q Consensus       253 r~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G  332 (368)
                      +..+..+.+..|++-.  .++|... .+...+..|..++..|+|.+|+.+|++++..-+..    ..+...++.||...|
T Consensus       193 ~~~~~~~A~~~~~~a~--~~~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~g  265 (368)
T 1fch_A          193 SDSLFLEVKELFLAAV--RLDPTSI-DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND----YLLWNKLGATLANGN  265 (368)
T ss_dssp             HHHHHHHHHHHHHHHH--HHSTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT
T ss_pred             hcccHHHHHHHHHHHH--HhCcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHcC
Confidence            3445555556665443  2334311 23345678999999999999999999999875543    467888999999999


Q ss_pred             ChHHHHHHHHHHh-cCCC
Q 017641          333 RPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       333 R~~EAiaLYkkL~-sHP~  349 (368)
                      +.++|+..|++.. .+|.
T Consensus       266 ~~~~A~~~~~~al~~~~~  283 (368)
T 1fch_A          266 QSEEAVAAYRRALELQPG  283 (368)
T ss_dssp             CHHHHHHHHHHHHHHCTT
T ss_pred             CHHHHHHHHHHHHHhCCC
Confidence            9999999999974 5665

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=96.53  E-value=0.013  Score=46.80  Aligned_cols=89  Identities=11%  Similarity=-0.036  Sum_probs=64.7

Q ss_pred             HHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHH
Q 017641          257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKE  336 (368)
Q Consensus       257 tke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~E  336 (368)
                      ..+.+..|++-.  .++|...   +.-+..|..++..|+|.+|+.+|++|+++-|..    -.+.+.++.+|...|+.++
T Consensus        47 ~~~A~~~~~~al--~~~p~~~---~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~  117 (150)
T 4ga2_A           47 YDLAKKYICTYI--NVQERDP---KAHRFLGLLYELEENTDKAVECYRRSVELNPTQ----KDLVLKIAELLCKNDVTDG  117 (150)
T ss_dssp             HHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHCSSSS
T ss_pred             HHHHHHHHHHHH--HhCCCCH---HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHH
Confidence            344455555433  4555543   335677999999999999999999999987765    4577889999999999988


Q ss_pred             HHHHH-HH-HhcCCC-HHHHH
Q 017641          337 ARIMY-EK-LQSHPN-ALVSK  354 (368)
Q Consensus       337 AiaLY-kk-L~sHP~-~eVrK  354 (368)
                      |+..| ++ |+-+|+ +.+-.
T Consensus       118 aa~~~~~~al~l~P~~~~~~~  138 (150)
T 4ga2_A          118 RAKYWVERAAKLFPGSPAVYK  138 (150)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHHHHHHHhCcCCHHHHH
Confidence            77654 65 556775 44433

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=96.47  E-value=0.012  Score=56.08  Aligned_cols=59  Identities=22%  Similarity=0.308  Sum_probs=42.1

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHH-HHHHHHh
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEAR-IMYEKLQ  345 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAi-aLYkkL~  345 (368)
                      .|..|..++..|+|.+|+.+|++|+++-+.+.    .+...|+.||..+++.++|. .+|+++-
T Consensus       354 ~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~----~a~~~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          354 LYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK----AARLQISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTC--------CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45568888888888888888888888766554    56777888888888888775 5676663

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=96.46  E-value=0.014  Score=46.91  Aligned_cols=62  Identities=18%  Similarity=0.125  Sum_probs=42.2

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP  348 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP  348 (368)
                      .+..|..++..|+|.+|+.+|+++++..+..    ..+.+.++.+|...|+.++|+.+|+++. .+|
T Consensus        94 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~  156 (243)
T 2q7f_A           94 YYGAGNVYVVKEMYKEAKDMFEKALRAGMEN----GDLFYMLGTVLVKLEQPKLALPYLQRAVELNE  156 (243)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS----HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            4455777777777777777777777765433    4556667777777777777777777764 344

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=96.45  E-value=0.028  Score=53.43  Aligned_cols=92  Identities=12%  Similarity=-0.009  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhc--------CchhhhhHHHHHHHhhcccCccchHHHHHHH
Q 017641          253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDS--------GKLKEALPFYEKVMNKMVFKSELHGLAALQW  324 (368)
Q Consensus       253 r~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~Amer--------GkYr~AV~~lEkA~~~v~~~S~LGGeaqLwL  324 (368)
                      +..+..+.+..|++-+  .++|..-   ...+..|..++..        |+|.+|+.+|++|+.+-+. ..-...+.+.+
T Consensus       191 ~~g~~~~A~~~~~~al--~~~p~~~---~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~l  264 (474)
T 4abn_A          191 HSRHVMDSVRQAKLAV--QMDVLDG---RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK-ASSNPDLHLNR  264 (474)
T ss_dssp             HHHHHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG-GGGCHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHH--HhCCCCH---HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC-cccCHHHHHHH
Confidence            4456667777777655  4455543   3356778888888        9999999999999998542 22456788899


Q ss_pred             HHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641          325 SICQDSLHRPKEARIMYEKLQ-SHPNA  350 (368)
Q Consensus       325 AiAydA~GR~~EAiaLYkkL~-sHP~~  350 (368)
                      +.||...|+.++|+..|++.. .+|+-
T Consensus       265 g~~~~~~g~~~~A~~~~~~al~l~p~~  291 (474)
T 4abn_A          265 ATLHKYEESYGEALEGFSQAAALDPAW  291 (474)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999974 56653

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=96.44  E-value=0.025  Score=49.04  Aligned_cols=90  Identities=7%  Similarity=0.011  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHhhcCCcC-ChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHH--HHHHHHHHHHhcC
Q 017641          256 RTRQLLAAYKKSVGLNV-DPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGL--AALQWSICQDSLH  332 (368)
Q Consensus       256 rtke~LaaYrk~~Gl~V-d~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGe--aqLwLAiAydA~G  332 (368)
                      ...+.+.-|.+-.-..- ++.......-.+..|...+..|+|.+|+.+|++|++........-++  +...++.||...|
T Consensus        90 ~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g  169 (293)
T 3u3w_A           90 RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG  169 (293)
T ss_dssp             CHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcC
Confidence            34455555554333222 22222222223347889999999999999999999965444444344  4577999999999


Q ss_pred             ChHHHHHHHHHHh
Q 017641          333 RPKEARIMYEKLQ  345 (368)
Q Consensus       333 R~~EAiaLYkkL~  345 (368)
                      +.++|+..|++..
T Consensus       170 ~~~~A~~~~~~al  182 (293)
T 3u3w_A          170 YLKKGIDLFEQIL  182 (293)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999999975

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=96.43  E-value=0.0074  Score=48.50  Aligned_cols=59  Identities=14%  Similarity=0.093  Sum_probs=33.3

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHH
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEK  343 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkk  343 (368)
                      .+..|..++..|+|.+|+..|++++..-+...  ...+...|+.+|...|+.++|+..|++
T Consensus       111 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~a~~~l~~~~~~~g~~~~A~~~y~~  169 (176)
T 2r5s_A          111 ACELAVQYNQVGRDEEALELLWNILKVNLGAQ--DGEVKKTFMDILSALGQGNAIASKYRR  169 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT--TTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHhCcccC--hHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence            45556666666666666666666655543221  123455556666666666666666654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.42  E-value=0.0097  Score=53.13  Aligned_cols=77  Identities=13%  Similarity=0.209  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcc---cCc----cchH--------------HHHHHHHHHHHhcCChH
Q 017641          277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMV---FKS----ELHG--------------LAALQWSICQDSLHRPK  335 (368)
Q Consensus       277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~---~~S----~LGG--------------eaqLwLAiAydA~GR~~  335 (368)
                      ..+++..+--|+.+|..|.|++|..+|.+|++..-   .++    -+|.              |+..+.|.||-.+++.+
T Consensus        60 ~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~  139 (167)
T 3ffl_A           60 PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDK  139 (167)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHH
Confidence            45566677889999999999999999999965443   222    1221              68899999999999999


Q ss_pred             HHHHHHHHHh-cCCCHHHH
Q 017641          336 EARIMYEKLQ-SHPNALVS  353 (368)
Q Consensus       336 EAiaLYkkL~-sHP~~eVr  353 (368)
                      +||++-+.|- +.-.+.|-
T Consensus       140 ~Ai~~Le~Ip~k~Rt~kvn  158 (167)
T 3ffl_A          140 DAIAILDGIPSRQRTPKIN  158 (167)
T ss_dssp             HHHHHHHTSCGGGCCHHHH
T ss_pred             HHHHHHhcCCchhcCHHHH
Confidence            9999988873 55555553

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=96.41  E-value=0.01  Score=49.63  Aligned_cols=89  Identities=12%  Similarity=0.001  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhc
Q 017641          252 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL  331 (368)
Q Consensus       252 ar~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~  331 (368)
                      .+..+..+.+..|++-..  .+|.   .....+..|..++..|+|.+|+.+|+++++.-+..    ..+.+.++.+|...
T Consensus        32 ~~~~~~~~A~~~~~~~~~--~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~  102 (327)
T 3cv0_A           32 LKLANLAEAALAFEAVCQ--AAPE---REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD----IAVHAALAVSHTNE  102 (327)
T ss_dssp             HHTTCHHHHHHHHHHHHH--HCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHT
T ss_pred             HHhccHHHHHHHHHHHHH--hCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC----HHHHHHHHHHHHHc
Confidence            344455666666654432  2221   34455667889999999999999999998875443    56778889999999


Q ss_pred             CChHHHHHHHHHHh-cCCC
Q 017641          332 HRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       332 GR~~EAiaLYkkL~-sHP~  349 (368)
                      |+.++|+.+|+++. .+|.
T Consensus       103 ~~~~~A~~~~~~~~~~~~~  121 (327)
T 3cv0_A          103 HNANAALASLRAWLLSQPQ  121 (327)
T ss_dssp             TCHHHHHHHHHHHHHTSTT
T ss_pred             CCHHHHHHHHHHHHHhCCc
Confidence            99999999999885 4554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.39  E-value=0.019  Score=56.10  Aligned_cols=67  Identities=10%  Similarity=-0.047  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhh----cccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNK----MVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (368)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~----v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (368)
                      ..+......|..+...|+|.+|+++|++|++.    ++....-=|..-..|+..|...|+.+||+.||++-
T Consensus       338 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A  408 (433)
T 3qww_A          338 YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA  408 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            44444555688999999999999999999754    45555555788889999999999999999999874

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=96.39  E-value=0.022  Score=47.72  Aligned_cols=68  Identities=13%  Similarity=0.050  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCc-----cchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS-----ELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S-----~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      ..+..|..++..|+|.+|+.+|+++++..+...     .-...+...++.||...|+.++|+..|++.. .+|+
T Consensus       195 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  268 (330)
T 3hym_B          195 VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ  268 (330)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc
Confidence            355667778888888888888888877653322     1223566677777777788888877777764 3443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=96.35  E-value=0.0043  Score=46.75  Aligned_cols=58  Identities=19%  Similarity=0.206  Sum_probs=43.6

Q ss_pred             hcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641          292 DSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (368)
Q Consensus       292 erGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (368)
                      ..|+|.+|+.+|++|+++- ....-...+.+.|+.||-..|+.++|+..|++.. .+|+-
T Consensus         2 ~~g~~~~A~~~~~~al~~~-~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   60 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASG-LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH   60 (117)
T ss_dssp             -----CCCHHHHHHHHSSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCCcHHHHHHHHHHHHHcC-CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            3689999999999999853 1123356888999999999999999999999985 57763

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.35  E-value=0.011  Score=51.81  Aligned_cols=67  Identities=10%  Similarity=0.072  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchH--HHHHHHHHHHHhc-CChHHHHHHHHHHh
Q 017641          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG--LAALQWSICQDSL-HRPKEARIMYEKLQ  345 (368)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGG--eaqLwLAiAydA~-GR~~EAiaLYkkL~  345 (368)
                      .+......|..+...|+|.+|+.+|++|+++.+......+  .+...++.+|... |+.++|+..|++..
T Consensus        76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al  145 (292)
T 1qqe_A           76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAG  145 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            3455667899999999999999999999998765544443  4556689999995 99999999999874

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=96.34  E-value=0.011  Score=50.85  Aligned_cols=90  Identities=12%  Similarity=0.089  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhc
Q 017641          252 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL  331 (368)
Q Consensus       252 ar~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~  331 (368)
                      .+..+..+.+..|++-.  .++|.   .....+..|..++..|+|.+|+.+|++|++.-+..    ..+.+.++.||...
T Consensus        75 ~~~g~~~~A~~~~~~al--~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~  145 (368)
T 1fch_A           75 LQEGDLPNAVLLFEAAV--QQDPK---HMEAWQYLGTTQAENEQELLAISALRRCLELKPDN----QTALMALAVSFTNE  145 (368)
T ss_dssp             HHTTCHHHHHHHHHHHH--HSCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHT
T ss_pred             HHCCCHHHHHHHHHHHH--HhCCC---CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHc
Confidence            34445556666665544  22332   24455666777888888888888888877765432    45677778888888


Q ss_pred             CChHHHHHHHHHHh-cCCCH
Q 017641          332 HRPKEARIMYEKLQ-SHPNA  350 (368)
Q Consensus       332 GR~~EAiaLYkkL~-sHP~~  350 (368)
                      |+.++|+.+|+++. .+|..
T Consensus       146 g~~~~A~~~~~~~~~~~~~~  165 (368)
T 1fch_A          146 SLQRQACEILRDWLRYTPAY  165 (368)
T ss_dssp             TCHHHHHHHHHHHHHTSTTT
T ss_pred             CCHHHHHHHHHHHHHhCcCc
Confidence            88888888887774 45543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=96.33  E-value=0.01  Score=52.34  Aligned_cols=67  Identities=13%  Similarity=0.240  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (368)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (368)
                      ++..+..|..++..|+|.+|+.+|++|+..-+..    ..+...++.||...|+.++|+..|++.. .+|+-
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~   71 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADCRRALELDGQS   71 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence            3557888999999999999999999999987654    5678889999999999999999999975 57753

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.32  E-value=0.02  Score=55.49  Aligned_cols=72  Identities=14%  Similarity=-0.015  Sum_probs=59.6

Q ss_pred             ChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhh----cccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641          273 DPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNK----MVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (368)
Q Consensus       273 d~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~----v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (368)
                      .+.--..+...-..|..++..|+|.+|+++|+++++.    ++.....=|..-..|+..|...|+.+||+.+|++-
T Consensus       322 g~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A  397 (429)
T 3qwp_A          322 PDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA  397 (429)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            3334455566666789999999999999999998754    56677777888999999999999999999999875

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=96.31  E-value=0.01  Score=57.13  Aligned_cols=85  Identities=11%  Similarity=0.029  Sum_probs=64.9

Q ss_pred             HHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHH
Q 017641          257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKE  336 (368)
Q Consensus       257 tke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~E  336 (368)
                      ..+.+..|++-.  .++|..   ....+..|..++..|+|.+|+.+|++|+++-+..    ..+...++.||...|+.++
T Consensus        22 ~~~A~~~~~~Al--~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~~lg~~~~~~g~~~e   92 (477)
T 1wao_1           22 YENAIKFYSQAI--ELNPSN---AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY----IKGYYRRAASNMALGKFRA   92 (477)
T ss_dssp             HHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----HHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHH--HhCCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHH
Confidence            334445554333  334544   3456788999999999999999999999885543    5678889999999999999


Q ss_pred             HHHHHHHHh-cCCCH
Q 017641          337 ARIMYEKLQ-SHPNA  350 (368)
Q Consensus       337 AiaLYkkL~-sHP~~  350 (368)
                      |+..|++.. .+|+.
T Consensus        93 A~~~~~~al~~~p~~  107 (477)
T 1wao_1           93 ALRDYETVVKVKPHD  107 (477)
T ss_dssp             HHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHhCCCC
Confidence            999999974 57753

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=96.29  E-value=0.017  Score=50.09  Aligned_cols=68  Identities=12%  Similarity=0.096  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhccc---CccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF---KSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~---~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      .++.-....|..++..|+|.+|+.+|++|++....   ....-..+-..++.||-..|+.++|+..|++..
T Consensus       153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al  223 (293)
T 3u3w_A          153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI  223 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            34445677899999999999999999999975542   334445577889999999999999999998763

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=96.28  E-value=0.0091  Score=52.60  Aligned_cols=90  Identities=12%  Similarity=-0.010  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhc
Q 017641          252 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL  331 (368)
Q Consensus       252 ar~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~  331 (368)
                      .+..+..+.++.|++-.  ..+|..   ....+..+..++.+|.+.+|+..|++++..-|.+    -++.+.|+.+|...
T Consensus       162 ~~~g~~~~A~~~l~~~~--~~~p~~---~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~----~~~~~~la~~l~~~  232 (287)
T 3qou_A          162 IALNRSEDAEAVLXTIP--LQDQDT---RYQGLVAQIELLXQAADTPEIQQLQQQVAENPED----AALATQLALQLHQV  232 (287)
T ss_dssp             HHTTCHHHHHHHHTTSC--GGGCSH---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHT
T ss_pred             HHCCCHHHHHHHHHhCc--hhhcch---HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCcc----HHHHHHHHHHHHHc
Confidence            44556667777776443  344422   2335566677778888888888888888876654    35677888888888


Q ss_pred             CChHHHHHHHHHHh-cCCCH
Q 017641          332 HRPKEARIMYEKLQ-SHPNA  350 (368)
Q Consensus       332 GR~~EAiaLYkkL~-sHP~~  350 (368)
                      ||.++|+..|+++. .+|+.
T Consensus       233 g~~~~A~~~l~~~l~~~p~~  252 (287)
T 3qou_A          233 GRNEEALELLFGHLRXDLTA  252 (287)
T ss_dssp             TCHHHHHHHHHHHHHHCTTG
T ss_pred             ccHHHHHHHHHHHHhccccc
Confidence            88888888888874 57764

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=96.27  E-value=0.015  Score=51.78  Aligned_cols=55  Identities=15%  Similarity=0.130  Sum_probs=33.1

Q ss_pred             HHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH-hcCC
Q 017641          290 LMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHP  348 (368)
Q Consensus       290 AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP  348 (368)
                      +++.|+|.+|+..|+++++..+..    ..+...+++||...||.++|+..|++. ..+|
T Consensus       176 ~~~~~~~~eA~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p  231 (291)
T 3mkr_A          176 AAGGEKLQDAYYIFQEMADKCSPT----LLLLNGQAACHMAQGRWEAAEGVLQEALDKDS  231 (291)
T ss_dssp             HHCTTHHHHHHHHHHHHHHHSCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HhCchHHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            345566666666666666664432    334455666666666666666666664 3455

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=96.20  E-value=0.024  Score=47.40  Aligned_cols=65  Identities=20%  Similarity=0.185  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      +..+..|..++..|+|.+|+.+|+++++.-+.    ...+.+.++.||...|+.++|+..|++.. .+|.
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~   87 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPE----REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK   87 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC
Confidence            44688999999999999999999999987654    45677889999999999999999999985 5664

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=96.18  E-value=0.012  Score=49.24  Aligned_cols=64  Identities=9%  Similarity=-0.022  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      ..+..|..++..|+|.+|+.+|+++++.-+.    ...+.+.++.||...|+.++|+..|++.. .+|+
T Consensus       238 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  302 (330)
T 3hym_B          238 LLNNLGHVCRKLKKYAEALDYHRQALVLIPQ----NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD  302 (330)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc----chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence            3556789999999999999999999988654    45778889999999999999999999985 4664

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=96.18  E-value=0.015  Score=57.61  Aligned_cols=67  Identities=13%  Similarity=0.007  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcc----cCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMV----FKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (368)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~----~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (368)
                      ..++..++....+..+|+|.+|+++|+++++...    .....=..+.-.|+.+|...|+.++|+.||++.
T Consensus       307 ~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a  377 (490)
T 3n71_A          307 QFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRM  377 (490)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            4566777788889999999999999999987542    222223667778999999999999999988874

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=96.12  E-value=0.028  Score=49.51  Aligned_cols=57  Identities=16%  Similarity=0.133  Sum_probs=32.0

Q ss_pred             HHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641          284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (368)
Q Consensus       284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (368)
                      +..|..++..|++.+|+.+|+++++..+..    ..+...++.+|...|+.++|+.+|++.
T Consensus       275 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a  331 (388)
T 1w3b_A          275 CNLANALKEKGSVAEAEDCYNTALRLCPTH----ADSLNNLANIKREQGNIEEAVRLYRKA  331 (388)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            344555666666666666666666554432    234445555555556666666655555

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=96.11  E-value=0.012  Score=48.65  Aligned_cols=65  Identities=12%  Similarity=0.047  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHhcCchhhhhHHHHHHHhhccc--CccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF--KSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (368)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~--~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (368)
                      +...+..|..++..|+|.+|+.+|+++++....  ....-..+...++.+|...|+.++|+..|++.
T Consensus       223 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  289 (338)
T 3ro2_A          223 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH  289 (338)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            333444455555555555555555554443322  23444444444555555555555555554443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.11  E-value=0.044  Score=46.14  Aligned_cols=65  Identities=18%  Similarity=0.061  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHh----cCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCHHH
Q 017641          282 KALKDGDSLMD----SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQSHPNALV  352 (368)
Q Consensus       282 ea~~~Gk~Ame----rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~sHP~~eV  352 (368)
                      ..+..|..++.    .|++.+|+.+|++|++.-      ...+...|+.+|..    .++.++|+..|++....-+...
T Consensus        40 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a  112 (273)
T 1ouv_A           40 GCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEG  112 (273)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccH
Confidence            34556777777    888888888888887651      46677778888888    8888888888888765444433

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=96.04  E-value=0.063  Score=47.22  Aligned_cols=68  Identities=10%  Similarity=0.022  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccc--hHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL--HGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~L--GGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      ..+...+..|..++..|+|.+|+.+|+++++........  -..+...++.+|-..|+.++|+.+|++..
T Consensus       221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  290 (411)
T 4a1s_A          221 AQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL  290 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            344566778999999999999999999998887653332  23467778999999999999999998764

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=96.04  E-value=0.0042  Score=59.88  Aligned_cols=68  Identities=9%  Similarity=-0.011  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (368)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (368)
                      .++..+..|..++..|+|.+|+.+|++|++.-+..    ..+...++.||...|+.++|+..|++.. .||.-
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~   73 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY   73 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence            34455677899999999999999999999986554    6778889999999999999999999985 67753

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=96.03  E-value=0.014  Score=53.17  Aligned_cols=64  Identities=19%  Similarity=0.164  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      ..+..|..++..|+|.+|+.+|++|+.+-+.+    ..+.+.++.||..+|+.++|+..|++.. .+|+
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~  296 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKN----PKALFRRGKAKAELGQMDSARDDFRKAQKYAPD  296 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            34667999999999999999999999986644    5678999999999999999999999985 4553

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=96.03  E-value=0.028  Score=50.03  Aligned_cols=59  Identities=17%  Similarity=-0.013  Sum_probs=44.6

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (368)
                      .+..|..++..|+|.+|+..|++         .-.-++.+.++.+|...||.++|+.+|+++. .+|+.
T Consensus       104 ~~~la~~~~~~g~~~~Al~~l~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~  163 (291)
T 3mkr_A          104 LLMAASIYFYDQNPDAALRTLHQ---------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA  163 (291)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHTT---------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHhC---------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc
Confidence            56678888888888888888877         1233566777888888888888888888875 56664

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=96.01  E-value=0.031  Score=49.77  Aligned_cols=90  Identities=9%  Similarity=-0.042  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHhhcCCcC-ChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCcc---chHHHHHHHHHHHHhc
Q 017641          256 RTRQLLAAYKKSVGLNV-DPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE---LHGLAALQWSICQDSL  331 (368)
Q Consensus       256 rtke~LaaYrk~~Gl~V-d~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~---LGGeaqLwLAiAydA~  331 (368)
                      +..+.+..|++-..+-- .+.....+...+..|..++..|+|.+|+.+|++|++.......   .-+.+...++.||...
T Consensus       118 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~  197 (383)
T 3ulq_A          118 EYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDL  197 (383)
T ss_dssp             CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHh
Confidence            34445555555443311 1223345666788899999999999999999999988766532   2356777889999999


Q ss_pred             CChHHHHHHHHHHh
Q 017641          332 HRPKEARIMYEKLQ  345 (368)
Q Consensus       332 GR~~EAiaLYkkL~  345 (368)
                      |+.++|+..|++..
T Consensus       198 g~~~~A~~~~~~al  211 (383)
T 3ulq_A          198 KQYEDAISHFQKAY  211 (383)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHH
Confidence            99999999998764

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.97  E-value=0.024  Score=50.40  Aligned_cols=63  Identities=14%  Similarity=0.154  Sum_probs=46.1

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch-------------HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH-------------GLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG-------------GeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      .+++++.++..|+|.+|++.|.++++..+..+...             -.+-.+|+.+|...|+.++|+.+|+++.
T Consensus         7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~   82 (434)
T 4b4t_Q            7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST   82 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            56677788888888888888888877666554332             1345677888888888888888888764

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=95.93  E-value=0.021  Score=50.32  Aligned_cols=64  Identities=13%  Similarity=-0.001  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCcc--chHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE--LHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~--LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      ......|..+.. |+|.+|+.+|++|++..+....  .-..+...++.+|...|+.++|+..|++..
T Consensus       117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  182 (307)
T 2ifu_A          117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK  182 (307)
T ss_dssp             HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            334455777766 9999999999998887765332  235666778889999999999999998874

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=95.93  E-value=0.02  Score=54.65  Aligned_cols=84  Identities=12%  Similarity=0.052  Sum_probs=58.4

Q ss_pred             HHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHH
Q 017641          258 RQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEA  337 (368)
Q Consensus       258 ke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EA  337 (368)
                      .+.+..|++-  +..+|...   ...+..|..++..|+|.+|+.+|++|+++-+..    ..+.+.|+.||...|+.++|
T Consensus         6 ~~A~~~~~~a--l~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A   76 (568)
T 2vsy_A            6 PRELLQLRAA--VRHRPQDF---VAWLMLADAELGMGDTTAGEMAVQRGLALHPGH----PEAVARLGRVRWTQQRHAEA   76 (568)
T ss_dssp             -----------------CCH---HHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC----HHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHH--HHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHH
Confidence            3444555433  34445432   346778999999999999999999999986654    56788999999999999999


Q ss_pred             HHHHHHHh-cCCCH
Q 017641          338 RIMYEKLQ-SHPNA  350 (368)
Q Consensus       338 iaLYkkL~-sHP~~  350 (368)
                      +..|++.. .+|+-
T Consensus        77 ~~~~~~al~~~p~~   90 (568)
T 2vsy_A           77 AVLLQQASDAAPEH   90 (568)
T ss_dssp             HHHHHHHHHHCTTC
T ss_pred             HHHHHHHHhcCCCC
Confidence            99999985 57753

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=95.92  E-value=0.053  Score=47.04  Aligned_cols=67  Identities=6%  Similarity=-0.068  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch--HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH--GLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG--GeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      ...-.+..|..++..|+|.+|+.+|++|+.........-  ..+-.+++++|...|+.++|+..|++..
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal  182 (293)
T 2qfc_A          114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQIL  182 (293)
T ss_dssp             HHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            334456678888999999999999999998765543333  4566789999999999999999998863

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=95.90  E-value=0.017  Score=49.79  Aligned_cols=66  Identities=14%  Similarity=0.030  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCc--cchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      +...+..|..++..|+|.+|+.+|++|++......  ..-..+...++.||...|+.++|+..|++..
T Consensus       267 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  334 (406)
T 3sf4_A          267 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  334 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44556678888899999999999999887765442  2225667778999999999999999988853

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=95.85  E-value=0.027  Score=49.60  Aligned_cols=63  Identities=16%  Similarity=0.180  Sum_probs=53.8

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      .+..|..+...|++.+|+.+|+++++..+..    ..+...++.+|...|+.++|+.+|++.. .+|+
T Consensus       308 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~  371 (388)
T 1w3b_A          308 LNNLANIKREQGNIEEAVRLYRKALEVFPEF----AAAHSNLASVLQQQGKLQEALMHYKEAIRISPT  371 (388)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC----HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            4456888999999999999999999876543    5678889999999999999999999985 5775

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=95.84  E-value=0.021  Score=51.09  Aligned_cols=66  Identities=14%  Similarity=0.112  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhccc--CccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF--KSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (368)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~--~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (368)
                      .+...+..|..++..|+|.+|+++|++|++....  ....-+.+...++.||...|+.++|+..|++.
T Consensus       181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a  248 (378)
T 3q15_A          181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA  248 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3444455666667777777777777776665432  22233455566666777777777776666665

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=95.82  E-value=0.05  Score=53.96  Aligned_cols=68  Identities=10%  Similarity=-0.006  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhh----cccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641          277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNK----MVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (368)
Q Consensus       277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~----v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (368)
                      -..+......|..+...|+|.+|+++|++|++.    ++.....=+..-..||..|...|+.+||+.||++-
T Consensus       348 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~A  419 (490)
T 3n71_A          348 LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKA  419 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            345555666788999999999999999999765    45555555888889999999999999999999875

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=95.80  E-value=0.048  Score=48.82  Aligned_cols=77  Identities=14%  Similarity=0.014  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHh---cCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHH
Q 017641          282 KALKDGDSLMD---SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRAR  357 (368)
Q Consensus       282 ea~~~Gk~Ame---rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAk  357 (368)
                      ..+..|..++.   .|+|.+|+.+|++++..-+..    ..+.+.++.||...|+.++|+..|++.. .+|.-.-..++.
T Consensus       414 ~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  489 (514)
T 2gw1_A          414 PLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS----EQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI  489 (514)
T ss_dssp             HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence            45667888899   999999999999999876543    5678889999999999999999999985 688766555555


Q ss_pred             HHhhh
Q 017641          358 QFMFS  362 (368)
Q Consensus       358 rLlyi  362 (368)
                      .++..
T Consensus       490 ~~~~~  494 (514)
T 2gw1_A          490 TFAEA  494 (514)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=95.77  E-value=0.1  Score=47.30  Aligned_cols=91  Identities=10%  Similarity=0.038  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHhhcCCcCChh--hHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhc
Q 017641          254 EERTRQLLAAYKKSVGLNVDPK--LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL  331 (368)
Q Consensus       254 ~~rtke~LaaYrk~~Gl~Vd~~--~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~  331 (368)
                      ..+..+.+..|++-..++-+..  ....+...+..|..++..|+|.+|+.+|++++..-+.     ..+.+.++.+|...
T Consensus       215 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~l~~~~~~~  289 (537)
T 3fp2_A          215 NDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-----PNSYIFLALTLADK  289 (537)
T ss_dssp             HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHTCCS
T ss_pred             HHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-----chHHHHHHHHHHHh
Confidence            3456666666665553332221  1223444556677777777777777777777665432     35555666666666


Q ss_pred             CChHHHHHHHHHHh-cCCC
Q 017641          332 HRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       332 GR~~EAiaLYkkL~-sHP~  349 (368)
                      |+.++|+.+|+++. .+|+
T Consensus       290 ~~~~~A~~~~~~~~~~~~~  308 (537)
T 3fp2_A          290 ENSQEFFKFFQKAVDLNPE  308 (537)
T ss_dssp             SCCHHHHHHHHHHHHHCTT
T ss_pred             cCHHHHHHHHHHHhccCCC
Confidence            66666666666653 3443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=95.73  E-value=0.031  Score=54.56  Aligned_cols=65  Identities=12%  Similarity=-0.104  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHhcCchhhhhHHHHHHHhhc----ccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKM----VFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (368)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v----~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (368)
                      +...++.++.+-..|+|.+|+++|+++++..    ......=..+--.|+.+|...|+.++|+.||++.
T Consensus       298 ~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a  366 (433)
T 3qww_A          298 ARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKI  366 (433)
T ss_dssp             HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence            3455667777778899999999999998753    3333333666778999999999999999999875

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=95.71  E-value=0.031  Score=49.80  Aligned_cols=67  Identities=12%  Similarity=0.205  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCc--cchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      .+...+..|..++..|+|.+|+.+|++|++......  ..-+.+...++.||...|+.++|+..|++..
T Consensus       183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al  251 (383)
T 3ulq_A          183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI  251 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            344556667777788888888888888777655332  3334566667788888888888887777764

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=95.71  E-value=0.072  Score=47.64  Aligned_cols=89  Identities=7%  Similarity=-0.084  Sum_probs=64.8

Q ss_pred             HHHHHHHHHhhcCCcCC-hhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCcc---chHHHHHHHHHHHHhcC
Q 017641          257 TRQLLAAYKKSVGLNVD-PKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE---LHGLAALQWSICQDSLH  332 (368)
Q Consensus       257 tke~LaaYrk~~Gl~Vd-~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~---LGGeaqLwLAiAydA~G  332 (368)
                      ..+.+..|++-..+--. +.....++..+..|..++..|+|..|+.+|++|++.......   .-+.+...++.||...|
T Consensus       117 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~  196 (378)
T 3q15_A          117 YVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFK  196 (378)
T ss_dssp             HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhC
Confidence            34455555554433211 123456667788899999999999999999999988776443   23566678999999999


Q ss_pred             ChHHHHHHHHHHh
Q 017641          333 RPKEARIMYEKLQ  345 (368)
Q Consensus       333 R~~EAiaLYkkL~  345 (368)
                      +.++|+..|++..
T Consensus       197 ~~~~A~~~~~~al  209 (378)
T 3q15_A          197 HYDKALPHLEAAL  209 (378)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999998864

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=95.46  E-value=0.067  Score=49.56  Aligned_cols=64  Identities=9%  Similarity=-0.068  Sum_probs=54.5

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (368)
                      .+..|..++..|+|.+|+.+|+++++.-+..    ..+...|+.+|...|+.++|+.+|+++. .+|+-
T Consensus       519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~  583 (597)
T 2xpi_A          519 WANLGHAYRKLKMYDAAIDALNQGLLLSTND----ANVHTAIALVYLHKKIPGLAITHLHESLAISPNE  583 (597)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence            3455888899999999999999999886543    4778889999999999999999999985 67754

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=95.43  E-value=0.12  Score=43.47  Aligned_cols=65  Identities=14%  Similarity=0.029  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHh----cCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCHHH
Q 017641          282 KALKDGDSLMD----SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQSHPNALV  352 (368)
Q Consensus       282 ea~~~Gk~Ame----rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~sHP~~eV  352 (368)
                      ..+..|..++.    .|++.+|+.+|++|++.-      ...+.+.|+.+|..    .++.++|+..|++....-+...
T Consensus        76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a  148 (273)
T 1ouv_A           76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDG  148 (273)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHH
Confidence            34455788888    999999999999998861      56888999999999    9999999999999875544443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=95.38  E-value=0.04  Score=55.20  Aligned_cols=64  Identities=11%  Similarity=0.146  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      ..+..|..++..|+|.+|+..|++|++.-+..    .++...++.||...|+.++|+..|++.. ..|+
T Consensus       435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~  499 (681)
T 2pzi_A          435 LPLMEVRALLDLGDVAKATRKLDDLAERVGWR----WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG  499 (681)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhccCcch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            36677889999999999999999998876654    4577778899999999999999998874 4564

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=95.28  E-value=0.032  Score=50.18  Aligned_cols=61  Identities=11%  Similarity=-0.001  Sum_probs=47.5

Q ss_pred             HHHHHHHhcCchhhhhHHHHHHHhhcccCccc--h---HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          285 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL--H---GLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~L--G---GeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      -.|...+..|+|.+|+++|++|+++.......  +   -.+-..++.+|...|+.++|+..|++..
T Consensus        56 ~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~  121 (472)
T 4g1t_A           56 LLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVK  121 (472)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            36899999999999999999999875432111  1   1233468999999999999999998863

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=95.23  E-value=0.099  Score=45.91  Aligned_cols=67  Identities=16%  Similarity=0.003  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchH--HHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG--LAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGG--eaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      .+...+..|..++..|+|.+|+.+|++|+...+......+  .+...++.+|-..|+.++|+.+|++..
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al  120 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAF  120 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4445667789999999999999999999988766544443  345679999999999999999999874

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=95.19  E-value=0.057  Score=47.43  Aligned_cols=67  Identities=15%  Similarity=0.043  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCc----cchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS----ELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S----~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      .+...+..|..++..|+|.+|+.+|+++++......    .....+...++.+|-..|+.++|+.+|++..
T Consensus        92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  162 (373)
T 1hz4_A           92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI  162 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            344456779999999999999999999998775322    3345667778999999999999999998864

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=95.18  E-value=0.032  Score=52.79  Aligned_cols=63  Identities=8%  Similarity=-0.081  Sum_probs=46.9

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      -+..|..++..|+|.+|+..|++|+++-+.+.    .+-..++.||...|+.++|+..|+++. .+|+
T Consensus       169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~----~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~  232 (382)
T 2h6f_A          169 WHHRRVLVEWLRDPSQELEFIADILNQDAKNY----HAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR  232 (382)
T ss_dssp             HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCccCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            45567777778888888888888887766553    455667888888888888888888874 5664

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=95.12  E-value=0.1  Score=43.77  Aligned_cols=58  Identities=19%  Similarity=0.102  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcC----ChHHHHHHHHHHhc
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH----RPKEARIMYEKLQS  346 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G----R~~EAiaLYkkL~s  346 (368)
                      ..+..|..++..|++.+|+.+|++|.+.      =...+...|+++|.. +    +.++|+.+|++...
T Consensus        20 a~~~lg~~~~~~~~~~~A~~~~~~a~~~------g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~   81 (212)
T 3rjv_A           20 AQYYLADTWVSSGDYQKAEYWAQKAAAQ------GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE   81 (212)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHT------TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH
Confidence            4455666666666666666666666553      124566666666666 5    66666666666643

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=94.85  E-value=0.046  Score=54.79  Aligned_cols=93  Identities=6%  Similarity=-0.070  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccc----------------
Q 017641          253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL----------------  316 (368)
Q Consensus       253 r~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~L----------------  316 (368)
                      +..+..+.+..|++-.  .++|..   .+..+..|..++..|+|.+|+.+|++|+++-+.....                
T Consensus       445 ~~g~~~~A~~~~~~al--~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~  519 (681)
T 2pzi_A          445 DLGDVAKATRKLDDLA--ERVGWR---WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE  519 (681)
T ss_dssp             HHTCHHHHHHHHHHHH--HHHCCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT
T ss_pred             hcCCHHHHHHHHHHHh--ccCcch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH
Confidence            4455667777776554  333332   2234455556666666666666666665554433211                


Q ss_pred             -------------hHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641          317 -------------HGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (368)
Q Consensus       317 -------------GGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (368)
                                   ...+.+.++.||...|+.++|+..|++.. .+|+-
T Consensus       520 ~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  567 (681)
T 2pzi_A          520 HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHF  567 (681)
T ss_dssp             TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTH
T ss_pred             HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCccc
Confidence                         13466778888888888888888888874 57764

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=94.85  E-value=0.096  Score=49.53  Aligned_cols=84  Identities=7%  Similarity=0.054  Sum_probs=59.5

Q ss_pred             HHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCc-hhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChH
Q 017641          257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGK-LKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK  335 (368)
Q Consensus       257 tke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGk-Yr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~  335 (368)
                      ..+.|..|++-.  .++|....   .-+..|..++..|+ |.+|+.+|++|+.+-+.+    -.+-..++.||..+|+.+
T Consensus       113 ~~~Al~~~~~al--~l~P~~~~---a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~----~~a~~~~g~~~~~~g~~~  183 (382)
T 2h6f_A          113 SERAFKLTRDAI--ELNAANYT---VWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN----YQVWHHRRVLVEWLRDPS  183 (382)
T ss_dssp             CHHHHHHHHHHH--HHCTTCHH---HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCCT
T ss_pred             hHHHHHHHHHHH--HhCccCHH---HHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHccCHH
Confidence            445555555333  34444322   24566888899997 999999999998877664    345667888999999999


Q ss_pred             HHHHHHHHHh-cCCC
Q 017641          336 EARIMYEKLQ-SHPN  349 (368)
Q Consensus       336 EAiaLYkkL~-sHP~  349 (368)
                      +|+..|++.. ..|.
T Consensus       184 eAl~~~~kal~ldP~  198 (382)
T 2h6f_A          184 QELEFIADILNQDAK  198 (382)
T ss_dssp             THHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhCcc
Confidence            9999999885 4554

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=94.60  E-value=0.04  Score=51.74  Aligned_cols=65  Identities=12%  Similarity=0.053  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHP  348 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP  348 (368)
                      ..|-.|..++..|+|.+|+.+|+++....  ...+...+.++|.+||..+|++++|+..|++...-|
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~  201 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWP--DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP  201 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCS--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccC--CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence            56888999999999999999999765433  122457899999999999999999999999996433

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.55  E-value=0.22  Score=47.30  Aligned_cols=130  Identities=9%  Similarity=0.087  Sum_probs=86.9

Q ss_pred             CCCccccCCCcccCCCCccCcHHHH---HH--------------HHHHHHHHHHHHHhhcCCcCC-hhh----HHHHH--
Q 017641          226 GNISKTFGGGRTIRPGDVLETAEAR---AA--------------KEERTRQLLAAYKKSVGLNVD-PKL----KSECE--  281 (368)
Q Consensus       226 ~NISkayGGGR~IrpGe~lEteEEk---aa--------------r~~rtke~LaaYrk~~Gl~Vd-~~~----~~e~e--  281 (368)
                      ..|--..|+|..+.+.. .+.+=..   ..              ..+...+.|+-||...=-++. ..-    ....+  
T Consensus        91 ~~i~~~~~~GY~l~~~~-~~~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~  169 (388)
T 2ff4_A           91 RVVLAAAPPGYRLSIPD-NTCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVED  169 (388)
T ss_dssp             HHHEEECSSEEEECCCG-GGBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHH
T ss_pred             ceEEEEECCEEEEcCCC-ccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHH
Confidence            34666788999888653 2222211   11              123356667777655433331 111    11112  


Q ss_pred             ---HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhc--------CCCH
Q 017641          282 ---KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS--------HPNA  350 (368)
Q Consensus       282 ---ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s--------HP~~  350 (368)
                         ...+....++..|++.+|+..++.++..-|..-+    +..+|..||-..||+.+|+..|++++.        -|.+
T Consensus       170 ~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~----~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~  245 (388)
T 2ff4_A          170 KVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREP----LWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP  245 (388)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH----HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence               2223467788999999999999999888777655    456778899999999999999999864        5999


Q ss_pred             HHHHHHHHHh
Q 017641          351 LVSKRARQFM  360 (368)
Q Consensus       351 eVrKQAkrLl  360 (368)
                      +++.--++|+
T Consensus       246 ~l~~l~~~il  255 (388)
T 2ff4_A          246 TLRALNERIL  255 (388)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9988877765

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=94.42  E-value=0.23  Score=43.49  Aligned_cols=82  Identities=12%  Similarity=0.156  Sum_probs=51.5

Q ss_pred             HHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHH
Q 017641          258 RQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEA  337 (368)
Q Consensus       258 ke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EA  337 (368)
                      .+.+..|++-+-. ++|....   .-+..|..+...|++.+|...|++|+..-+.+..   .+-+.++.++...|+.++|
T Consensus        81 ~~A~~~~~rAl~~-~~p~~~~---~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~~~~~~A  153 (308)
T 2ond_A           81 DEAANIYERAIST-LLKKNML---LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT---LVYIQYMKFARRAEGIKSG  153 (308)
T ss_dssp             HHHHHHHHHHHTT-TTTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH---HHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHH-hCcccHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc---HHHHHHHHHHHHhcCHHHH
Confidence            4455555544320 3444322   2344566777788888888888888875443321   2666677777788888888


Q ss_pred             HHHHHHHhc
Q 017641          338 RIMYEKLQS  346 (368)
Q Consensus       338 iaLYkkL~s  346 (368)
                      +.+|++...
T Consensus       154 ~~~~~~a~~  162 (308)
T 2ond_A          154 RMIFKKARE  162 (308)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            888888753

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=94.05  E-value=0.16  Score=46.99  Aligned_cols=65  Identities=8%  Similarity=-0.004  Sum_probs=51.0

Q ss_pred             HHHHHHHhcCchhhhhHHHHHHHhhccc---CccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          285 KDGDSLMDSGKLKEALPFYEKVMNKMVF---KSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~~---~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      ..|..++..|+|.+|+.+|+++++..+.   ....-..+...++.+|-..|+.++|+.+|+++. .+|.
T Consensus       480 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  548 (597)
T 2xpi_A          480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN  548 (597)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            3577888899999999999999887542   222235677789999999999999999999974 5663

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=93.99  E-value=0.78  Score=40.06  Aligned_cols=50  Identities=16%  Similarity=0.185  Sum_probs=35.8

Q ss_pred             cCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 017641          293 SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS  346 (368)
Q Consensus       293 rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s  346 (368)
                      .|++.+|+..|++|+...+..    ..+-+.++..+...|+.++|+++|++...
T Consensus       182 ~~~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~g~~~~A~~~~~~al~  231 (308)
T 2ond_A          182 SKDKSVAFKIFELGLKKYGDI----PEYVLAYIDYLSHLNEDNNTRVLFERVLT  231 (308)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            578888888888887776543    34555566777777888888888877764

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=93.82  E-value=0.34  Score=38.45  Aligned_cols=64  Identities=19%  Similarity=0.131  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHh----cCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCH
Q 017641          281 EKALKDGDSLMD----SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQSHPNA  350 (368)
Q Consensus       281 eea~~~Gk~Ame----rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~sHP~~  350 (368)
                      ...+..|..++.    .+++.+|+.+|++|.+.      =...++.+|+++|..    ..+.++|+..|++-..+-+.
T Consensus        58 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~  129 (138)
T 1klx_A           58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE  129 (138)
T ss_dssp             HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence            345666777777    78889999999998765      236788889999988    88899999999888655444

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=93.36  E-value=0.16  Score=37.49  Aligned_cols=50  Identities=8%  Similarity=-0.084  Sum_probs=41.8

Q ss_pred             hhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641          297 KEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (368)
Q Consensus       297 r~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (368)
                      .+|+.+|++++..-+..    ..+.+.++.+|...|+.++|+..|++.. .+|..
T Consensus         2 ~~a~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   52 (115)
T 2kat_A            2 QAITERLEAMLAQGTDN----MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY   52 (115)
T ss_dssp             CCHHHHHHHHHTTTCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc
Confidence            57899999999876644    4678889999999999999999999985 56653

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.19  E-value=0.31  Score=43.29  Aligned_cols=66  Identities=9%  Similarity=0.013  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCc--cchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      +...+..|..+++.|+|.+|+.+|+.++..+....  ..-.++.+.++.+|-+.|+.++|+.+|++..
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  202 (434)
T 4b4t_Q          135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR  202 (434)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            44556779999999999999999999877654432  3446777888999999999999999999863

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=93.19  E-value=1.4  Score=36.71  Aligned_cols=71  Identities=7%  Similarity=-0.087  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHh----cCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHhcCCC
Q 017641          280 CEKALKDGDSLMD----SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL-H-----RPKEARIMYEKLQSHPN  349 (368)
Q Consensus       280 ~eea~~~Gk~Ame----rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~-G-----R~~EAiaLYkkL~sHP~  349 (368)
                      ....+..|..++.    .+++.+|+.+|++|.++ +.    ...++.+|+++|..- |     +.++|+..|++-..+-+
T Consensus       125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~----~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SR----TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SC----TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CC----CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            4456777888888    78999999999999887 22    244889999999754 4     89999999999876555


Q ss_pred             HHHHHH
Q 017641          350 ALVSKR  355 (368)
Q Consensus       350 ~eVrKQ  355 (368)
                      .+-...
T Consensus       200 ~~A~~~  205 (212)
T 3rjv_A          200 DTGCEE  205 (212)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544433

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=93.18  E-value=0.29  Score=33.68  Aligned_cols=68  Identities=18%  Similarity=0.286  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcC
Q 017641          256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH  332 (368)
Q Consensus       256 rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G  332 (368)
                      +..+.+..|++-.  .++|..   ....+..|..++..|+|.+|+.+|+++++.-+..    ..+...++.+|...|
T Consensus        24 ~~~~A~~~~~~a~--~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           24 DYDEAIEYYQKAL--ELDPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAKQNLGNAKQKQG   91 (91)
T ss_dssp             CHHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHH--hcCCCC---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcC
Confidence            3445555555443  233433   2346778999999999999999999999986543    456677788776554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=92.89  E-value=0.65  Score=35.71  Aligned_cols=63  Identities=16%  Similarity=-0.013  Sum_probs=50.4

Q ss_pred             HHHHHHHHHhcCc---hhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          283 ALKDGDSLMDSGK---LKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       283 a~~~Gk~AmerGk---Yr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      .+..|..+|-.+.   ..+|..+|++|+..=+.+    ..+.+.|+..+-..|+.++||..|+++. ..|.
T Consensus         9 ~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~----~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            9 LAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN----EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             HHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            4556777764443   899999999999976654    4678888999999999999999999985 5665

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=92.71  E-value=0.12  Score=36.93  Aligned_cols=77  Identities=17%  Similarity=0.177  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcC
Q 017641          253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH  332 (368)
Q Consensus       253 r~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G  332 (368)
                      +..+..+.+..|++-+  .++|....  ...+..|..++..|+|.+|+.+|++|+.+-+......    .+        +
T Consensus        12 ~~~~~~~A~~~~~~al--~~~p~~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~----~~--------~   75 (99)
T 2kc7_A           12 NQGDIENALQALEEFL--QTEPVGKD--EAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ----AR--------K   75 (99)
T ss_dssp             HHTCHHHHHHHHHHHH--HHCSSTHH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH----HH--------H
T ss_pred             HcCCHHHHHHHHHHHH--HHCCCcHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH----HH--------H
Confidence            3444556666666544  34454332  1467889999999999999999999999887665432    11        5


Q ss_pred             ChHHHHHHHHHHh
Q 017641          333 RPKEARIMYEKLQ  345 (368)
Q Consensus       333 R~~EAiaLYkkL~  345 (368)
                      +..+|+..|+++.
T Consensus        76 ~~~~a~~~~~~~~   88 (99)
T 2kc7_A           76 MVMDILNFYNKDM   88 (99)
T ss_dssp             HHHHHHHHHCCTT
T ss_pred             HHHHHHHHHHHHh
Confidence            6677788887763

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=92.35  E-value=0.38  Score=43.22  Aligned_cols=60  Identities=13%  Similarity=-0.016  Sum_probs=41.2

Q ss_pred             HHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHH
Q 017641          289 SLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALV  352 (368)
Q Consensus       289 ~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eV  352 (368)
                      .....|.|.+|+.+|++|+..-+..    ..+...++.+|...|+.++|+..|++.. .||+-..
T Consensus       222 ~~~~~~~~~~a~~~~~~al~~~~~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~  282 (472)
T 4g1t_A          222 MREEGEEEGEGEKLVEEALEKAPGV----TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAY  282 (472)
T ss_dssp             CC------CHHHHHHHHHHHHCSSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHhhhhHHHHHHHHHHHHHHhCccH----HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHH
Confidence            3345577778888888877765443    4566788999999999999999999874 7887543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=92.24  E-value=0.54  Score=36.16  Aligned_cols=38  Identities=8%  Similarity=-0.123  Sum_probs=30.5

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHH
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAA  321 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaq  321 (368)
                      .+-.|..+|..|+|++|+.+|+++++..+. +.--..++
T Consensus        46 ~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~i~   83 (93)
T 3bee_A           46 LSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVTII   83 (93)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHHHH
Confidence            455599999999999999999999998887 54433333

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=91.46  E-value=1.3  Score=35.08  Aligned_cols=59  Identities=8%  Similarity=-0.042  Sum_probs=50.4

Q ss_pred             HHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCH
Q 017641          286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQSHPNA  350 (368)
Q Consensus       286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~sHP~~  350 (368)
                      .|..++..+.+.+|+.+|++|.+.      =...++..|+++|..    ..+.++|+..|++-...-++
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~   93 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQ   93 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCCH
Confidence            788888888899999999999886      246899999999998    89999999999998654443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=91.08  E-value=1.5  Score=41.29  Aligned_cols=59  Identities=7%  Similarity=0.040  Sum_probs=48.0

Q ss_pred             HhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHH
Q 017641          291 MDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVS  353 (368)
Q Consensus       291 merGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVr  353 (368)
                      +..|++.+|...|++|++..|..    ..+-+.++..+...|+.++|+.+|++.. .||+.++-
T Consensus        23 ~~~~~~~~a~~~~e~al~~~P~~----~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw   82 (530)
T 2ooe_A           23 AQNQPIDKARKTYERLVAQFPSS----GRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLW   82 (530)
T ss_dssp             HHSSCHHHHHHHHHHHHTTCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHH
Confidence            56899999999999999988765    3344446777778999999999999996 68987653

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=90.35  E-value=0.65  Score=43.73  Aligned_cols=51  Identities=20%  Similarity=0.395  Sum_probs=38.1

Q ss_pred             cCchh-------hhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 017641          293 SGKLK-------EALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS  346 (368)
Q Consensus       293 rGkYr-------~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s  346 (368)
                      .|++.       +|+..|++|+..+.++   ...+-+.++..++..|+.++|+.+|+++..
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~---~~~l~~~~~~~~~~~g~~~~A~~~~~~al~  349 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAISTLLKK---NMLLYFAYADYEESRMKYEKVHSIYNRLLA  349 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTTTCSS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHhcCCHHHHHHHHHHHhC
Confidence            68876       8888888888743332   245566678888888999999999988764

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=90.21  E-value=2.3  Score=36.91  Aligned_cols=75  Identities=15%  Similarity=0.151  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHhcC---chhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCCHHHHHHH
Q 017641          281 EKALKDGDSLMDSG---KLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHPNALVSKRA  356 (368)
Q Consensus       281 eea~~~Gk~AmerG---kYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~~eVrKQA  356 (368)
                      +..|+-|-.+....   .+++++.+||.++..-.+  .-.-+.-..||++|=.+|+.++|+..+++| +..|+-.   ||
T Consensus        33 ~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p--~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~---QA  107 (152)
T 1pc2_A           33 STQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSK--EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN---QA  107 (152)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH--HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH---HH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--cchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH---HH
Confidence            44677788888877   888999999999986511  134578899999999999999999999999 4788643   44


Q ss_pred             HHHh
Q 017641          357 RQFM  360 (368)
Q Consensus       357 krLl  360 (368)
                      +.|.
T Consensus       108 ~~Lk  111 (152)
T 1pc2_A          108 KELE  111 (152)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=89.10  E-value=2.5  Score=39.33  Aligned_cols=64  Identities=13%  Similarity=0.041  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHh----cCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCHH
Q 017641          282 KALKDGDSLMD----SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQSHPNAL  351 (368)
Q Consensus       282 ea~~~Gk~Ame----rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~sHP~~e  351 (368)
                      ..+..|..++.    .+++.+|+.+|++|.+.      =...++..|+.+|..    .++.++|+..|++...+-+..
T Consensus        77 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~  148 (490)
T 2xm6_A           77 AEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDS  148 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence            34555777887    88899999999998764      135778888888888    788899999998886544433

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=89.08  E-value=2.5  Score=39.32  Aligned_cols=58  Identities=12%  Similarity=0.090  Sum_probs=32.5

Q ss_pred             HHHHHHh----cCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCC
Q 017641          286 DGDSLMD----SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQSHPN  349 (368)
Q Consensus       286 ~Gk~Ame----rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~sHP~  349 (368)
                      .|..++.    .+++.+|+.+|++|.+.-      .-.+..+|+.+|..    .++.++|+.+|++.....+
T Consensus       189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~  254 (490)
T 2xm6_A          189 LGYMYSRGLGVERNDAISAQWYRKSATSG------DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN  254 (490)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHhcCCCCCcCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence            3444444    566666666666665431      13455666666664    5666666666666554333

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=87.39  E-value=2.6  Score=40.06  Aligned_cols=65  Identities=9%  Similarity=-0.058  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP  348 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP  348 (368)
                      ..+-.|..++..|+|.+|+.+|+++++.-+  +...=++.+-++.+|-..||.+.|+.++++++ .+|
T Consensus       102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~--~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~  167 (310)
T 3mv2_B          102 ELYLLATAQAILGDLDKSLETCVEGIDNDE--AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIE  167 (310)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHTSSC--STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCC--CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence            356779999999999999999999877554  34556778888999999999999999999996 688

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=87.18  E-value=1.7  Score=42.77  Aligned_cols=68  Identities=18%  Similarity=0.063  Sum_probs=55.2

Q ss_pred             HHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCCHHHHHHHHHHhh
Q 017641          289 SLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHPNALVSKRARQFMF  361 (368)
Q Consensus       289 ~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~~eVrKQAkrLly  361 (368)
                      .++-.|++.+|+.++++|+.+=  ++   -.+-+.++.+|...|+.++|++.|++- .-.|...+-.-++.|.|
T Consensus       286 ~~l~~gd~d~A~~~l~rAl~Ln--~s---~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~~~~~l~F  354 (372)
T 3ly7_A          286 SALVKGKTDESYQAINTGIDLE--MS---WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIF  354 (372)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC--CC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHHHHHHSSS
T ss_pred             HHHhCCCHHHHHHHHHHHHhcC--CC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHHHHhCcee
Confidence            3455799999999999999994  33   234467899999999999999999776 57999988777776665

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=87.09  E-value=3.8  Score=38.83  Aligned_cols=75  Identities=15%  Similarity=0.083  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchH-------------------HHHHHHHHHHHhcCChHHH
Q 017641          277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG-------------------LAALQWSICQDSLHRPKEA  337 (368)
Q Consensus       277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGG-------------------eaqLwLAiAydA~GR~~EA  337 (368)
                      ..+++..+..|..+...|...+|+..|+.|+.+... .-|.|                   .+...++-++-+.|++.+|
T Consensus       112 ~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG-~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a  190 (388)
T 2ff4_A          112 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRG-PVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV  190 (388)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS-STTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC-CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            578889999999999999999999999999988732 22332                   1333466778899999999


Q ss_pred             HHHHHHHh-cCCCHHH
Q 017641          338 RIMYEKLQ-SHPNALV  352 (368)
Q Consensus       338 iaLYkkL~-sHP~~eV  352 (368)
                      +..+++|. .||..+-
T Consensus       191 ~~~l~~~~~~~P~~E~  206 (388)
T 2ff4_A          191 IAELEALTFEHPYREP  206 (388)
T ss_dssp             HHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHhCCCCHH
Confidence            98888885 7998773

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=86.47  E-value=1  Score=45.28  Aligned_cols=64  Identities=13%  Similarity=-0.033  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch---------------------HHHHHHHHHHHHhcCChHHHHHH
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---------------------GLAALQWSICQDSLHRPKEARIM  340 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG---------------------GeaqLwLAiAydA~GR~~EAiaL  340 (368)
                      .-...+..++.-|+|.+||+.|++|...-.-+.-+.                     .+-...++-+|+..|+++|||.+
T Consensus       150 n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~l  229 (449)
T 1b89_A          150 NFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITM  229 (449)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHH
Confidence            445668888899999999999998832110011111                     11122355788899999999888


Q ss_pred             HHHHh
Q 017641          341 YEKLQ  345 (368)
Q Consensus       341 YkkL~  345 (368)
                      +++--
T Consensus       230 Le~aL  234 (449)
T 1b89_A          230 LEAAL  234 (449)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            88763

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=85.86  E-value=1.1  Score=32.95  Aligned_cols=57  Identities=14%  Similarity=0.184  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch
Q 017641          256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH  317 (368)
Q Consensus       256 rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG  317 (368)
                      +..+.+..|++-+  .++|....   ..+..|..++..|+|.+|+.+|++|+++.+......
T Consensus        22 ~~~~A~~~~~~al--~~~p~~~~---a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~   78 (100)
T 3ma5_A           22 NASRALALFEELV--ETDPDYVG---TYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQK   78 (100)
T ss_dssp             CHHHHHHHHHHHH--HHSTTCTH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHH
T ss_pred             CHHHHHHHHHHHH--HhCCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchh
Confidence            3444555555443  34454322   467789999999999999999999998866554444

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=84.29  E-value=1  Score=45.18  Aligned_cols=51  Identities=18%  Similarity=0.019  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (368)
                      .-...|..+++.|+|.+|+.+|..+            .-..-||.||--+|+.++|+..|++.
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a------------~n~~~LA~~L~~Lg~yq~AVea~~KA  174 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTLVHLGEYQAAVDGARKA  174 (449)
T ss_dssp             -------------CTTTHHHHHHHT------------TCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh------------hhHHHHHHHHHHhccHHHHHHHHHHc
Confidence            4567799999999999999999987            34556899999999999999999999

>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1

Probab=83.18  E-value=3.3  Score=36.48  Aligned_cols=66  Identities=17%  Similarity=0.205  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccC----ccchHHHH-HHHHHHHHhcCChHHHHHHHHHH
Q 017641          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK----SELHGLAA-LQWSICQDSLHRPKEARIMYEKL  344 (368)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~----S~LGGeaq-LwLAiAydA~GR~~EAiaLYkkL  344 (368)
                      .-...|..|..+|+.|+|-+|=+.||.+-......    .-+.|.|| +--|+-+-..|+..=|..|+++-
T Consensus        31 ~~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~A  101 (161)
T 2ijq_A           31 TLRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTS  101 (161)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            34457999999999999999999999997766544    46889999 99999999999999999999864

>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A

Probab=82.19  E-value=1.7  Score=34.80  Aligned_cols=60  Identities=22%  Similarity=0.174  Sum_probs=49.5

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhccc--CccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVF--KSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~--~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (368)
                      .|..|..+|+.|+|-+|=+.||.+-...+.  +.-+.|.+|+--|+-+-..|+.  |..|+++-
T Consensus         4 ~~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a   65 (94)
T 2cwy_A            4 DWEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKA   65 (94)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHH
T ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHH
Confidence            478899999999999999999999766632  3458899998888877777887  88888764

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=82.14  E-value=0.36  Score=45.59  Aligned_cols=85  Identities=16%  Similarity=0.072  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCch---hhhhHHHHHHHhhcccCccchHHHHHHHHHH
Q 017641          251 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKL---KEALPFYEKVMNKMVFKSELHGLAALQWSIC  327 (368)
Q Consensus       251 aar~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkY---r~AV~~lEkA~~~v~~~S~LGGeaqLwLAiA  327 (368)
                      +-+..+..+.+.-|++-.       .....+..+..|..++..|.+   .+|+.+|++|.+.       ...++..|+.+
T Consensus        13 ~~~~g~~~~A~~~~~~aa-------~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-------~~~A~~~Lg~~   78 (452)
T 3e4b_A           13 ALKRGDTVTAQQNYQQLA-------ELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-------SPRAQARLGRL   78 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHH-------HHTCCTGGGTCC-----------------------------------CHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHH-------HCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-------CHHHHHHHHHH
Confidence            344556666666665421       112233445567778888888   8888888888755       34667788886


Q ss_pred             HHhcC-----ChHHHHHHHHHHh--cCCC
Q 017641          328 QDSLH-----RPKEARIMYEKLQ--SHPN  349 (368)
Q Consensus       328 ydA~G-----R~~EAiaLYkkL~--sHP~  349 (368)
                      |...|     +.++|+..|++..  .|+.
T Consensus        79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~  107 (452)
T 3e4b_A           79 LAAKPGATEAEHHEAESLLKKAFANGEGN  107 (452)
T ss_dssp             HHTC--CCHHHHHHHHHHHHHHHHTTCSS
T ss_pred             HHhCCCCCCcCHHHHHHHHHHHHHCCCHH
Confidence            66665     6678888888875  3444

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=81.24  E-value=3.1  Score=39.17  Aligned_cols=48  Identities=15%  Similarity=0.100  Sum_probs=27.1

Q ss_pred             HhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcC-----ChHHHHHHHHHHh
Q 017641          291 MDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH-----RPKEARIMYEKLQ  345 (368)
Q Consensus       291 merGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G-----R~~EAiaLYkkL~  345 (368)
                      ...|++.+|+.+|++|.+.=      ...++.+|+.+|. .|     +.++|+..|++..
T Consensus       262 ~~~~d~~~A~~~~~~Aa~~g------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa  314 (452)
T 3e4b_A          262 PELGDVEQMMKYLDNGRAAD------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV  314 (452)
T ss_dssp             GGGCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence            34566666666666655321      3455566666665 44     5666666665554

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=80.54  E-value=6.7  Score=37.27  Aligned_cols=98  Identities=14%  Similarity=0.087  Sum_probs=56.5

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHhhcC--------CcCChhhHHHHHHHHHH-----------HHHHHhcCc----------
Q 017641          245 ETAEARAAKEERTRQLLAAYKKSVG--------LNVDPKLKSECEKALKD-----------GDSLMDSGK----------  295 (368)
Q Consensus       245 EteEEkaar~~rtke~LaaYrk~~G--------l~Vd~~~~~e~eea~~~-----------Gk~AmerGk----------  295 (368)
                      .|+|+.+++..+.++++++|+.-++        -+.+.+..+-+..++..           +..+..-|.          
T Consensus        10 ~~~~~~~~~~~~~~~ki~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~   89 (331)
T 3dss_A           10 TSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAAL   89 (331)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             CcHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHH
Confidence            3566666666666677777764332        25555555555544433           444433343          


Q ss_pred             hhhhhHHHHHHHhhcccCccchHHHHHH--HHHHHHhcCC--hHHHHHHHHHHh-cCC
Q 017641          296 LKEALPFYEKVMNKMVFKSELHGLAALQ--WSICQDSLHR--PKEARIMYEKLQ-SHP  348 (368)
Q Consensus       296 Yr~AV~~lEkA~~~v~~~S~LGGeaqLw--LAiAydA~GR--~~EAiaLYkkL~-sHP  348 (368)
                      |.+++.+++.++..-|-+      -++|  -..+++.+|+  .+++++.|.++. .||
T Consensus        90 l~~EL~~~~~~L~~~PKn------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp  141 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKS------YGTWHHRCWLLSRLPEPNWARELELCARFLEADE  141 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC
Confidence            678888888887654433      2333  3456667774  678888887774 565

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=80.14  E-value=3.7  Score=47.38  Aligned_cols=62  Identities=15%  Similarity=0.096  Sum_probs=43.1

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcccC---ccch--------------------HHHHHHHHHHHHhcCChHHHHH
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFK---SELH--------------------GLAALQWSICQDSLHRPKEARI  339 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~---S~LG--------------------GeaqLwLAiAydA~GR~~EAia  339 (368)
                      -++.|..+...|+|.+|+++|..|.......   +.+|                    -.....++.+|+..|+.++|+.
T Consensus      1137 y~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~ 1216 (1630)
T 1xi4_A         1137 YMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKL 1216 (1630)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence            3456888889999999999998877655221   1111                    1123457888888888888888


Q ss_pred             HHHHH
Q 017641          340 MYEKL  344 (368)
Q Consensus       340 LYkkL  344 (368)
                      +|.+.
T Consensus      1217 ~Y~kA 1221 (1630)
T 1xi4_A         1217 LYNNV 1221 (1630)
T ss_pred             HHHhh
Confidence            88875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	368
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.39
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.04
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.0
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.99
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.93
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.83
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.78
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.74
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.74
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.67
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.59
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.58
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.51
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.43
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.41
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.3
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	97.28
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	97.13
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.11
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.09
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.06
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.05
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	96.99
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	96.99
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	96.96
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	96.95
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	96.94
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	96.89
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	96.82
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	96.73
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	96.6
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	96.6
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	96.44
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	96.06
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	95.89
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	95.59
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	95.24
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	94.84
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	94.25
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	93.14
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	93.14
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	92.18
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	92.1
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	91.08
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	90.67
d2ijqa1	145	Hypothetical protein rrnAC1037 {Haloarcula marismo	86.89
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	82.95
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	82.59
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	82.47
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	82.25

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=5.7e-07  Score=67.36  Aligned_cols=72  Identities=11%  Similarity=0.036  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch---HHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCCHH
Q 017641          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---GLAALQWSICQDSLHRPKEARIMYEKL-QSHPNAL  351 (368)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG---GeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~~e  351 (368)
                      ++.-|..|..+|+.|+|.+|+.+|++|+...+......   +.+--.|+.||..+|+.++|+..|++. +-.|+-.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~   80 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ   80 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCH
Confidence            34568999999999999999999999999877654322   567777999999999999999999996 5566643

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=9.9e-06  Score=63.53  Aligned_cols=66  Identities=14%  Similarity=0.238  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      +++..+.|..+|..|+|.+|+.+|++|+++-|.+    ..+-..+++||..+|+.++|+..|++.. -+|+
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~----~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~   70 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADCRRALELDGQ   70 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC
Confidence            3445566777777777777777777777766544    2344445677777777777777776664 3453

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.00  E-value=1.3e-05  Score=64.37  Aligned_cols=75  Identities=16%  Similarity=0.174  Sum_probs=63.7

Q ss_pred             hHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHH-----------HHHHHHHHHhcCChHHHHHHHHHH
Q 017641          276 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLA-----------ALQWSICQDSLHRPKEARIMYEKL  344 (368)
Q Consensus       276 ~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGea-----------qLwLAiAydA~GR~~EAiaLYkkL  344 (368)
                      ..+.++...+.|..+|..|.|.+|+.+|.+|+..++....+..+.           .+.+|+||-.+|+.++||..|++.
T Consensus        11 ~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~a   90 (168)
T d1kt1a1          11 KLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA   90 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhh
Confidence            457788889999999999999999999999999988877765543           345899999999999999999998


Q ss_pred             h-cCCCH
Q 017641          345 Q-SHPNA  350 (368)
Q Consensus       345 ~-sHP~~  350 (368)
                      . .+|+-
T Consensus        91 l~l~p~~   97 (168)
T d1kt1a1          91 LGLDSAN   97 (168)
T ss_dssp             HHHCTTC
T ss_pred             hhcccch
Confidence            5 46653

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=9.8e-06  Score=61.86  Aligned_cols=61  Identities=13%  Similarity=0.086  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (368)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (368)
                      +++..+.|..+|..|+|.+|+..|++|+..-|..    ..+-..++.||...|+.++|+..|++.
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a   63 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN----HVLYSNRSAAYAKKGDYQKAYEDGCKT   63 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc----hhhhhcccccccccccccccchhhhhH
Confidence            3444555566666666666666666655544333    234445555555555555555555554

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.93  E-value=1.9e-05  Score=62.83  Aligned_cols=75  Identities=13%  Similarity=0.199  Sum_probs=60.2

Q ss_pred             hHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchH------------HHHHHHHHHHHhcCChHHHHHHHHH
Q 017641          276 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG------------LAALQWSICQDSLHRPKEARIMYEK  343 (368)
Q Consensus       276 ~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGG------------eaqLwLAiAydA~GR~~EAiaLYkk  343 (368)
                      ...++....+.|..+|..|+|.+|+..|++|+..++.......            .+.+.+++||-.+|++++|+..|++
T Consensus        13 ~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~   92 (153)
T d2fbna1          13 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK   92 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhc
Confidence            4566777888999999999999999999999988765543322            1334599999999999999999999


Q ss_pred             Hh-cCCCH
Q 017641          344 LQ-SHPNA  350 (368)
Q Consensus       344 L~-sHP~~  350 (368)
                      .. .||.-
T Consensus        93 al~~~p~~  100 (153)
T d2fbna1          93 VLKIDKNN  100 (153)
T ss_dssp             HHHHSTTC
T ss_pred             cccccchh
Confidence            64 67743

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=5.7e-05  Score=58.32  Aligned_cols=102  Identities=19%  Similarity=0.155  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch---HHHHHHHHHHHH
Q 017641          253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---GLAALQWSICQD  329 (368)
Q Consensus       253 r~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG---GeaqLwLAiAyd  329 (368)
                      +..+..+.+..|.+-.  +++|....   ..+..|..++..|+|.+|++.|++|+++-+......   |.+-+.++.+|.
T Consensus        16 ~~~~y~~Ai~~y~~al--~~~p~~~~---~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~   90 (128)
T d1elra_          16 KKKDFDTALKHYDKAK--ELDPTNMT---YITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF   90 (128)
T ss_dssp             HTTCHHHHHHHHHHHH--HHCTTCHH---HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHH--HhCcccHH---HHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHH
Confidence            3445677788887655  66776433   467789999999999999999999999887766543   677788999999


Q ss_pred             hcCChHHHHHHHHHH-hcCCCHHHHHHHHHH
Q 017641          330 SLHRPKEARIMYEKL-QSHPNALVSKRARQF  359 (368)
Q Consensus       330 A~GR~~EAiaLYkkL-~sHP~~eVrKQAkrL  359 (368)
                      ++++.++|+.+|++. .-|+++++.+.-.++
T Consensus        91 ~~~~~~~A~~~~~kal~~~~~~~~~~~l~~~  121 (128)
T d1elra_          91 KEEKYKDAIHFYNKSLAEHRTPDVLKKCQQA  121 (128)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            999999999999886 579999887766554

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.78  E-value=7.7e-05  Score=56.46  Aligned_cols=67  Identities=21%  Similarity=0.201  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCCHH
Q 017641          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHPNAL  351 (368)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~~e  351 (368)
                      +..|..|..+|..|+|.+|+..|++|+..-|..    -.+..+|+.||...|+.++|+..|++. +-+|+-.
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   84 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPER----EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI   84 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhccccccc----chhhhhhhhhhhhhhhHHHhhcccccccccccccc
Confidence            346889999999999999999999999886643    588899999999999999999999996 4688743

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=6.6e-05  Score=58.95  Aligned_cols=93  Identities=11%  Similarity=0.036  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcC
Q 017641          253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH  332 (368)
Q Consensus       253 r~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G  332 (368)
                      +..+..+.+..|++-+  .++|.   -+..-+..|..++..|++.+|+..|++|+++-+.    ...+.+.++.||..+|
T Consensus        22 ~~~~y~~A~~~~~~al--~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~----~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          22 KAKDYENAIKFYSQAI--ELNPS---NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK----YIKGYYRRAASNMALG   92 (159)
T ss_dssp             HTTCHHHHHHHHHHHH--HHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTT
T ss_pred             HcCCHHHHHHHhhhcc--ccchh---hhhhhhhhHHHHHhccccchHHHHHHHHHHHccc----chHHHHHHHHHHHHcC
Confidence            3444556666665444  33332   4445566788888888888888888888877654    3467788899999999


Q ss_pred             ChHHHHHHHHHHh-cCCC-HHHHH
Q 017641          333 RPKEARIMYEKLQ-SHPN-ALVSK  354 (368)
Q Consensus       333 R~~EAiaLYkkL~-sHP~-~eVrK  354 (368)
                      +.++|+..|++.. .+|+ ..+..
T Consensus        93 ~~~eA~~~~~~a~~~~p~~~~~~~  116 (159)
T d1a17a_          93 KFRAALRDYETVVKVKPHDKDAKM  116 (159)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCCHHHHH
Confidence            9999999999986 4665 44433

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=6.9e-05  Score=60.48  Aligned_cols=71  Identities=20%  Similarity=0.287  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchH-----------HHHHHHHHHHHhcCChHHHHHHHHHHh-
Q 017641          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG-----------LAALQWSICQDSLHRPKEARIMYEKLQ-  345 (368)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGG-----------eaqLwLAiAydA~GR~~EAiaLYkkL~-  345 (368)
                      +.+....+.|..+|.+|+|.+|+..|++|++.++..+.+-.           .+-..+|.||-..|+.++|+..|++.. 
T Consensus        11 ~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~   90 (170)
T d1p5qa1          11 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE   90 (170)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhh
Confidence            34555556677777777777777777777766665544322           222345666666666666666666654 


Q ss_pred             cCC
Q 017641          346 SHP  348 (368)
Q Consensus       346 sHP  348 (368)
                      .+|
T Consensus        91 ~~p   93 (170)
T d1p5qa1          91 LDS   93 (170)
T ss_dssp             HCT
T ss_pred             ccc
Confidence            344

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=0.00015  Score=56.87  Aligned_cols=70  Identities=9%  Similarity=-0.015  Sum_probs=60.8

Q ss_pred             hHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          276 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       276 ~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      -.+.++...+.|..+|..|+|.+|+..|++|+..-+..    ..+-..++.||-.+|+.++|+..|++.. -.|+
T Consensus         6 ~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~   76 (159)
T d1a17a_           6 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELDKK   76 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhh----hhhhhhhHHHHHhccccchHHHHHHHHHHHccc
Confidence            35778889999999999999999999999999986653    5666789999999999999999999985 3454

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=9.8e-05  Score=56.95  Aligned_cols=63  Identities=14%  Similarity=0.032  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      ++...-..|..+|..|+|.+|+.+|++|+++-+.+    -.+...++.||-..|+.++|+..|++..
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al   65 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN----MTYITNQAAVYFEKGDYNKCRELCEKAI   65 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence            45556678999999999999999999999987654    3577889999999999999999999953

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.58  E-value=0.00015  Score=58.39  Aligned_cols=68  Identities=9%  Similarity=-0.067  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      ..++.-|..|..++..|+|.+|+..|++|+.+-|-.    .++-..++.||...|+.++|+..|++.. .+|+
T Consensus        35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  103 (259)
T d1xnfa_          35 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM----PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT  103 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC----HHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh
Confidence            456667888999999999999999999999876654    4566778999999999999999998885 4665

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.51  E-value=0.00018  Score=56.76  Aligned_cols=67  Identities=16%  Similarity=0.066  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch--------HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH--------GLAALQWSICQDSLHRPKEARIMYEKL  344 (368)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG--------GeaqLwLAiAydA~GR~~EAiaLYkkL  344 (368)
                      .++...+..|...|..|+|.+|+..|++|+++.+......        +.+-..++.||..+|+.++|+..|++-
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~a   81 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA   81 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhh
Confidence            4555677889999999999999999999999877654322        345567899999999999999888775

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.00011  Score=61.06  Aligned_cols=63  Identities=14%  Similarity=0.108  Sum_probs=36.9

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      .|+.|..+|..|+|.+|+..|++|+..=|.+    .++-.+|+.||...|+.++|+..|+++. .+|+
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~   85 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH----MEAWQYLGTTQAENEQELLAISALRRCLELKPD   85 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHhhhccccc
Confidence            4566666666666666666666666543332    3455556666666666666666666653 3443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.41  E-value=0.00019  Score=55.99  Aligned_cols=86  Identities=12%  Similarity=0.058  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHh
Q 017641          251 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS  330 (368)
Q Consensus       251 aar~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA  330 (368)
                      ..+..+..+.+..|.+-+  .++|..-   ..-+..|..++..|+|.+|+.+|++|+++-|..    ..+-+.++.||..
T Consensus        14 ~~~~g~~~~Ai~~~~kal--~~~p~~~---~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~----~~a~~~lg~~~~~   84 (201)
T d2c2la1          14 LFVGRKYPEAAACYGRAI--TRNPLVA---VYYTNRALCYLKMQQPEQALADCRRALELDGQS----VKAHFFLGQCQLE   84 (201)
T ss_dssp             HHHTTCHHHHHHHHHHHH--HHCSCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC----HHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHH--HhCCCCH---HHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCc----HHHHHHHHHHHHH
Confidence            445567788888898655  5667653   346677999999999999999999999886654    3467889999999


Q ss_pred             cCChHHHHHHHHHHh
Q 017641          331 LHRPKEARIMYEKLQ  345 (368)
Q Consensus       331 ~GR~~EAiaLYkkL~  345 (368)
                      +|+.++|+..|++..
T Consensus        85 l~~~~~A~~~~~~al   99 (201)
T d2c2la1          85 MESYDEAIANLQRAY   99 (201)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999999999863

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.00043  Score=52.42  Aligned_cols=90  Identities=18%  Similarity=0.144  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHh
Q 017641          251 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS  330 (368)
Q Consensus       251 aar~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA  330 (368)
                      ..+..+..+.+.-|.+-.  .++|..-.   --+..|..++..|+|.+|+..|++|+.+-+..    ..+.++++.||..
T Consensus        13 ~~~~g~~~eAi~~~~~al--~~~p~~~~---~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~g~~~~~   83 (117)
T d1elwa_          13 ALSVGNIDDALQCYSEAI--KLDPHNHV---LYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW----GKGYSRKAAALEF   83 (117)
T ss_dssp             HHHTTCHHHHHHHHHHHH--HHCTTCHH---HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHH--hcCCcchh---hhhcccccccccccccccchhhhhHHHhccch----hhHHHHHHHHHHH
Confidence            445567778888887654  66676543   36677999999999999999999999886654    4688999999999


Q ss_pred             cCChHHHHHHHHHHh-cCCC
Q 017641          331 LHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       331 ~GR~~EAiaLYkkL~-sHP~  349 (368)
                      +|+.++|+..|++.. .-|+
T Consensus        84 ~~~~~~A~~~~~~a~~~~p~  103 (117)
T d1elwa_          84 LNRFEEAKRTYEEGLKHEAN  103 (117)
T ss_dssp             TTCHHHHHHHHHHHHTTCTT
T ss_pred             ccCHHHHHHHHHHHHHhCCC
Confidence            999999999999996 4554

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.0002  Score=58.34  Aligned_cols=83  Identities=10%  Similarity=-0.019  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCC
Q 017641          254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR  333 (368)
Q Consensus       254 ~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR  333 (368)
                      .-+..+.+..|++-.  ..+|.   .....+..|..++..|+|.+|+.+|++|++.-|..    .++...|+.||...|+
T Consensus        12 ~G~~~~A~~~~~~~l--~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~a~~~l~~~~~~~g~   82 (388)
T d1w3ba_          12 AGDFEAAERHCMQLW--RQEPD---NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL----AEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HTCHHHHHHHHHHHH--HHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTC
T ss_pred             cCCHHHHHHHHHHHH--HhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHhhhhcc
Confidence            344566666665443  33443   24556667888888888888888888888775543    4567778888888888


Q ss_pred             hHHHHHHHHHHh
Q 017641          334 PKEARIMYEKLQ  345 (368)
Q Consensus       334 ~~EAiaLYkkL~  345 (368)
                      .++|+..|+++.
T Consensus        83 ~~~A~~~~~~~~   94 (388)
T d1w3ba_          83 LQEAIEHYRHAL   94 (388)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             cccccccccccc
Confidence            888888888875

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00071  Score=55.06  Aligned_cols=63  Identities=16%  Similarity=0.180  Sum_probs=51.1

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      .+..|..++..|+|.+|+.+|++|++.-+..    ..+.+.++.||...|+.++|+..|++.. -+|+
T Consensus       308 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~  371 (388)
T d1w3ba_         308 LNNLANIKREQGNIEEAVRLYRKALEVFPEF----AAAHSNLASVLQQQGKLQEALMHYKEAIRISPT  371 (388)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC----HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred             hhHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            3445778889999999999999998865543    5677889999999999999999998864 5775

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.11  E-value=0.0011  Score=52.41  Aligned_cols=73  Identities=14%  Similarity=0.040  Sum_probs=61.6

Q ss_pred             HHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC-CHHHHHHHHHHh
Q 017641          284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP-NALVSKRARQFM  360 (368)
Q Consensus       284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP-~~eVrKQAkrLl  360 (368)
                      +..|..++..|+|.+|+.+|++|+..-|.+.    .+..+++.||-.+|+.++|+..|++.. -+| |.+++.+-..+.
T Consensus        71 ~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~----ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  145 (153)
T d2fbna1          71 LNLATCYNKNKDYPKAIDHASKVLKIDKNNV----KALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  145 (153)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHhcccchhhhhhhccccccchhh----hhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            4579999999999999999999999877664    688999999999999999999999996 566 566766555444

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.09  E-value=0.0013  Score=51.50  Aligned_cols=90  Identities=17%  Similarity=0.152  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHhhcCCcCChhh---------HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch------
Q 017641          253 KEERTRQLLAAYKKSVGLNVDPKL---------KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH------  317 (368)
Q Consensus       253 r~~rtke~LaaYrk~~Gl~Vd~~~---------~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG------  317 (368)
                      +..+..+.|..|.+-+-  +.+..         ...+..-...|..++..|+|.+|+..|++++...+....+.      
T Consensus        21 ~~g~y~~Ai~~y~~Al~--i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~   98 (156)
T d2hr2a1          21 VAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL   98 (156)
T ss_dssp             HHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred             HcCCHHHHHHHHHHHHH--hChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccch
Confidence            33456777888877653  22221         11233344679999999999999999999999877655543      


Q ss_pred             -HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641          318 -GLAALQWSICQDSLHRPKEARIMYEKL  344 (368)
Q Consensus       318 -GeaqLwLAiAydA~GR~~EAiaLYkkL  344 (368)
                       ..+...++.||..+||.++|+..|++-
T Consensus        99 ~~~a~~~~g~~~~~lg~~eeA~~~~~~A  126 (156)
T d2hr2a1          99 WISAVYSRALALDGLGRGAEAMPEFKKV  126 (156)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence             345667899999999999999999984

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.0028  Score=51.84  Aligned_cols=94  Identities=13%  Similarity=0.049  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCcc------------chHHHHHH
Q 017641          256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE------------LHGLAALQ  323 (368)
Q Consensus       256 rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~------------LGGeaqLw  323 (368)
                      ...+.+..|.+-+  .+||..-.   .-+..|..++..|+|.+|+..|++|+..+..+..            ..+++...
T Consensus        51 ~~~~A~~~~~kAl--~ldp~~~~---a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n  125 (192)
T d1hh8a_          51 NMTEAEKAFTRSI--NRDKHLAV---AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYN  125 (192)
T ss_dssp             CHHHHHHHHHHHH--HHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHH
T ss_pred             CchhHHHHHHHHH--HHhhhhhh---hHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHH
Confidence            3455566666554  55665533   3566799999999999999999999887654432            23688888


Q ss_pred             HHHHHHhcCChHHHHHHHHHHh-cCCCHHHHH
Q 017641          324 WSICQDSLHRPKEARIMYEKLQ-SHPNALVSK  354 (368)
Q Consensus       324 LAiAydA~GR~~EAiaLYkkL~-sHP~~eVrK  354 (368)
                      +++||..+|+.++|+..|++-. .||......
T Consensus       126 ~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~  157 (192)
T d1hh8a_         126 IAFMYAKKEEWKKAEEQLALATSMKSEPRHSK  157 (192)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCcchHH
Confidence            9999999999999999998865 577754433

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.002  Score=51.57  Aligned_cols=86  Identities=17%  Similarity=0.128  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChH
Q 017641          256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK  335 (368)
Q Consensus       256 rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~  335 (368)
                      +..+.+..|++-.  .++|..-   +.-+..|..++..|+|.+|+..|++|+.+-+..    ..+.+.++.||-..|+.+
T Consensus        52 ~~~~A~~~~~~al--~l~p~~~---~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~  122 (259)
T d1xnfa_          52 LRALARNDFSQAL--AIRPDMP---EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY----NYAHLNRGIALYYGGRDK  122 (259)
T ss_dssp             CHHHHHHHHHHHH--HHCCCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----THHHHHHHHHHHHTTCHH
T ss_pred             CHHHHHHHHHHhh--ccCCCCH---HHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhh----hhhHHHHHHHHHHHhhHH
Confidence            4556677777654  5556543   235678999999999999999999999987654    467889999999999999


Q ss_pred             HHHHHHHHHh-cCCCH
Q 017641          336 EARIMYEKLQ-SHPNA  350 (368)
Q Consensus       336 EAiaLYkkL~-sHP~~  350 (368)
                      +|+..|++.. ..|+.
T Consensus       123 ~A~~~~~~al~~~p~~  138 (259)
T d1xnfa_         123 LAQDDLLAFYQDDPND  138 (259)
T ss_dssp             HHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhhcccc
Confidence            9999999885 56653

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.99  E-value=0.0028  Score=52.24  Aligned_cols=76  Identities=14%  Similarity=0.058  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch-------------------HHHHHHHHHHHHhcCChHHH
Q 017641          277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH-------------------GLAALQWSICQDSLHRPKEA  337 (368)
Q Consensus       277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG-------------------GeaqLwLAiAydA~GR~~EA  337 (368)
                      ..+|+..+..|..++..|++.+|+++|.+|+.+....- +.                   -.+...++.+|...|++++|
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~-l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~A   86 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPV-LDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV   86 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSST-TGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccc-cccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence            57888999999999999999999999999998865321 11                   13556789999999999999


Q ss_pred             HHHHHHHh-cCCCHHHH
Q 017641          338 RIMYEKLQ-SHPNALVS  353 (368)
Q Consensus       338 iaLYkkL~-sHP~~eVr  353 (368)
                      +..|+++. .||.-+--
T Consensus        87 l~~~~~al~~~P~~e~~  103 (179)
T d2ff4a2          87 IAELEALTFEHPYREPL  103 (179)
T ss_dssp             HHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHhCCccHHH
Confidence            99999995 79987643

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=96.99  E-value=0.012  Score=46.54  Aligned_cols=70  Identities=10%  Similarity=0.027  Sum_probs=57.4

Q ss_pred             HHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC-HHHHHHHHH
Q 017641          285 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN-ALVSKRARQ  358 (368)
Q Consensus       285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~-~eVrKQAkr  358 (368)
                      ..|..++..|+|.+|+.++++|+.+-+.+    ..+.++++.||..+|+.++|+..|++.. -+|+ .++...-..
T Consensus        69 Nla~~~~~l~~~~~Ai~~~~~al~l~p~~----~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~  140 (168)
T d1kt1a1          69 NLAMCYLKLREYTKAVECCDKALGLDSAN----EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFM  140 (168)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             hHHHHHHHhhhcccchhhhhhhhhcccch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            46888999999999999999999986654    4788999999999999999999999996 4554 444443333

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.96  E-value=0.00076  Score=50.76  Aligned_cols=85  Identities=11%  Similarity=-0.040  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHh
Q 017641          251 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS  330 (368)
Q Consensus       251 aar~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA  330 (368)
                      ..+..+..+.+..|++-+  .++|..   .+.-+..|..++..|++.+|+.+|++|+++-|..    .++.+-|++||..
T Consensus        26 ~~~~g~~~~A~~~~~~al--~~~p~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~a~~~la~~y~~   96 (112)
T d1hxia_          26 MLKLANLAEAALAFEAVC--QKEPER---EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD----IAVHAALAVSHTN   96 (112)
T ss_dssp             HHHTTCHHHHHHHHHHHH--HHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHhhhc--cccccc---chhhhhhhhhhhhhhhHHHhhccccccccccccc----ccchHHHHHHHHH
Confidence            344556677777777554  556654   3445778999999999999999999999997765    4778899999999


Q ss_pred             cCChHHHHHHHHHH
Q 017641          331 LHRPKEARIMYEKL  344 (368)
Q Consensus       331 ~GR~~EAiaLYkkL  344 (368)
                      .|+.++|+..+++.
T Consensus        97 ~g~~~~A~~~l~~~  110 (112)
T d1hxia_          97 EHNANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999999999885

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.002  Score=51.59  Aligned_cols=71  Identities=10%  Similarity=0.007  Sum_probs=59.0

Q ss_pred             HHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC-CHHHHHHHHHH
Q 017641          285 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP-NALVSKRARQF  359 (368)
Q Consensus       285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP-~~eVrKQAkrL  359 (368)
                      ..|..+|..|+|.+|+.+|++|+.+-|.++    .+..+++.||..+|+.++|+..|++.. -+| |+.+...-.++
T Consensus        67 nla~~y~k~~~~~~A~~~~~~al~~~p~~~----~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~  139 (170)
T d1p5qa1          67 NLAMCHLKLQAFSAAIESCNKALELDSNNE----KGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC  139 (170)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHhhhhcccccchhhhhhhccccch----hhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            468889999999999999999999976653    467889999999999999999999985 576 66665544433

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.94  E-value=0.0013  Score=52.01  Aligned_cols=71  Identities=13%  Similarity=0.048  Sum_probs=56.0

Q ss_pred             HHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC-CHHHHHHHHH
Q 017641          284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP-NALVSKRARQ  358 (368)
Q Consensus       284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP-~~eVrKQAkr  358 (368)
                      +..|..++..|+|.+|+..|++|+++-+    -...+.++++.||..+|+.++|+.-|++.. ..| +.++...-..
T Consensus        81 ~nla~~~~~~~~~~~Ai~~~~~al~~~p----~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~  153 (169)
T d1ihga1          81 LNIGACKLKMSDWQGAVDSCLEALEIDP----SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK  153 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHhhcccchhhhhhhhhhhhhh----hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            3358888899999999999999998643    356889999999999999999999999985 344 5555544333

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.0016  Score=51.81  Aligned_cols=60  Identities=7%  Similarity=-0.023  Sum_probs=45.7

Q ss_pred             HHHHHHhcCchhhhhHHHHHHHhhcccCcc-chHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641          286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSE-LHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~-LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (368)
                      .++.++..|+|.+|+.+|++|++..+.+.. ....+...++.||...|+.++|+..|++..
T Consensus        18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~   78 (366)
T d1hz4a_          18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE   78 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            478888888888888888888887765432 234556667888888888888888888763

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.82  E-value=0.0042  Score=51.18  Aligned_cols=76  Identities=9%  Similarity=0.088  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH--------hcCCCHHHH
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL--------QSHPNALVS  353 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL--------~sHP~~eVr  353 (368)
                      .....+..+...|+|.+|+..|++++..=|.+    -.+...|..||-..||+.+|+..|+++        --.|.+++.
T Consensus        69 a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~----e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~  144 (179)
T d2ff4a2          69 AHTAKAEAEIACGRASAVIAELEALTFEHPYR----EPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  144 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             HHHHHHHHHHHCCCchHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence            34566999999999999999999999987754    456677899999999999999999996        357999998


Q ss_pred             HHHHHHhh
Q 017641          354 KRARQFMF  361 (368)
Q Consensus       354 KQAkrLly  361 (368)
                      .-..+|+-
T Consensus       145 ~l~~~il~  152 (179)
T d2ff4a2         145 ALNERILR  152 (179)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            88887764

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.73  E-value=0.0057  Score=48.10  Aligned_cols=31  Identities=13%  Similarity=0.062  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          319 LAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       319 eaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      .+.+.++.||-.+|+.++||..|++.. -+|+
T Consensus        78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  109 (169)
T d1ihga1          78 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPS  109 (169)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHhhcccchhhhhhhhhhhhhhh
Confidence            344456777777777777777777764 3553

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.0041  Score=48.36  Aligned_cols=92  Identities=10%  Similarity=0.092  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhc---CchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHH
Q 017641          253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDS---GKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQD  329 (368)
Q Consensus       253 r~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~Amer---GkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAyd  329 (368)
                      ..+...+....|++-.  .++|...   +..|.-|..++..   |++++|+..|++++..-+...  .-.+-+.|++||.
T Consensus        11 ~~~~l~~Ae~~Y~~aL--~~~p~~~---~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~--~~~~~~~Lg~~y~   83 (122)
T d1nzna_          11 SVEDLLKFEKKFQSEK--AAGSVSK---STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE--QRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHH--HHSCCCH---HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH--hhCCCCH---HHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCch--HHHHHHHHHHHHH
Confidence            3345555566777555  3344432   2366778888864   566779999999887544322  2346677999999


Q ss_pred             hcCChHHHHHHHHHHh-cCCCHH
Q 017641          330 SLHRPKEARIMYEKLQ-SHPNAL  351 (368)
Q Consensus       330 A~GR~~EAiaLYkkL~-sHP~~e  351 (368)
                      ..|+.++|+..|+++. --|+-.
T Consensus        84 ~~g~~~~A~~~~~~aL~~~P~~~  106 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQTEPQNN  106 (122)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHhhhHHHHHHHHHHHHhCcCCH
Confidence            9999999999999995 567643

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.0086  Score=49.38  Aligned_cols=56  Identities=14%  Similarity=0.065  Sum_probs=27.4

Q ss_pred             HHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641          285 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (368)
Q Consensus       285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (368)
                      ..|..++..|+|.+|+.+|++++..-+..    .++...++.||...|+.++|+..|++.
T Consensus       177 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~a  232 (323)
T d1fcha_         177 GLGVLFNLSGEYDKAVDCFTAALSVRPND----YLLWNKLGATLANGNQSEEAVAAYRRA  232 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhhccccccccccccc----ccchhhhhhcccccccchhHHHHHHHH
Confidence            34555555555555555555555443321    233444455555555555555555554

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.0051  Score=50.20  Aligned_cols=79  Identities=13%  Similarity=0.039  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCCh
Q 017641          255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP  334 (368)
Q Consensus       255 ~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~  334 (368)
                      ....+.|..|.+     +++..   ++-.+..|..++..|+|.+|+.+|++|+++=+..    ..+-..+++||...|+.
T Consensus        19 ~d~~~Al~~~~~-----i~~~~---~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~----~~a~~~~g~~~~~~g~~   86 (192)
T d1hh8a_          19 KDWKGALDAFSA-----VQDPH---SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL----AVAYFQRGMLYYQTEKY   86 (192)
T ss_dssp             TCHHHHHHHHHT-----SSSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHHHh-----cCCCC---HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh----hhhHHHHHHHHHhhccH
Confidence            346677888874     22222   2346889999999999999999999999875433    66788899999999999


Q ss_pred             HHHHHHHHHHh
Q 017641          335 KEARIMYEKLQ  345 (368)
Q Consensus       335 ~EAiaLYkkL~  345 (368)
                      ++|+..|++..
T Consensus        87 ~~A~~~~~kAl   97 (192)
T d1hh8a_          87 DLAIKDLKEAL   97 (192)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999863

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.029  Score=51.77  Aligned_cols=71  Identities=15%  Similarity=0.091  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh--cCCCHHHHHHH
Q 017641          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ--SHPNALVSKRA  356 (368)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~--sHP~~eVrKQA  356 (368)
                      ..+..|..+..+|+|.+|+.+|++|+++-|..    |.+..+|+++|...|++.+|+.-|.+-.  .+|++..+..=
T Consensus       154 ~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~----~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL  226 (497)
T d1ya0a1         154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSN----GQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNL  226 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB----SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            45667999999999999999999999997754    6778999999999999999999998874  68887766553

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=95.89  E-value=0.018  Score=45.53  Aligned_cols=88  Identities=14%  Similarity=-0.059  Sum_probs=64.1

Q ss_pred             HHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCc--cchHHHHHHHHHHHHhcCCh
Q 017641          257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHRP  334 (368)
Q Consensus       257 tke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR~  334 (368)
                      ..+.+.-|++-..+.-+......+...+..|..++..|+|.+|+.+|+.|++......  ..-..+.+.++.+|...|+.
T Consensus        28 ~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (366)
T d1hz4a_          28 PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFL  107 (366)
T ss_dssp             HHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            4455666665543322222334555667789999999999999999999988766543  33355677889999999999


Q ss_pred             HHHHHHHHHH
Q 017641          335 KEARIMYEKL  344 (368)
Q Consensus       335 ~EAiaLYkkL  344 (368)
                      .+|+..|.+.
T Consensus       108 ~~a~~~~~~a  117 (366)
T d1hz4a_         108 QTAWETQEKA  117 (366)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998875

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.59  E-value=0.0087  Score=50.57  Aligned_cols=69  Identities=17%  Similarity=0.082  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHh-cCchhhhhHHHHHHHhhccc--CccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          281 EKALKDGDSLMD-SGKLKEALPFYEKVMNKMVF--KSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       281 eea~~~Gk~Ame-rGkYr~AV~~lEkA~~~v~~--~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      ......|..+.. .|+|.+|+++|++|+++...  +...-+.+...++.+|-..|+.++|+.+|+++. .++.
T Consensus       118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~  190 (290)
T d1qqea_         118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG  190 (290)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCcc
Confidence            334455666644 59999999999999876543  345568888999999999999999999999986 4443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=95.24  E-value=0.025  Score=49.43  Aligned_cols=66  Identities=11%  Similarity=-0.009  Sum_probs=55.8

Q ss_pred             HHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHH
Q 017641          286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKR  355 (368)
Q Consensus       286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQ  355 (368)
                      +++.+|..|+|.+|+..|++++..-|.+.    .+...|+.+|-..|+.++|+..|++.. .+|+...--+
T Consensus         2 q~~~aL~~G~l~eAl~~l~~al~~~P~d~----~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~   68 (264)
T d1zbpa1           2 QWKNALSEGQLQQALELLIEAIKASPKDA----SLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS   68 (264)
T ss_dssp             CHHHHTTTTCHHHHHHHHHHHHHTCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             hHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            47889999999999999999999888765    457788999999999999999999995 5776554433

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.84  E-value=0.073  Score=44.65  Aligned_cols=76  Identities=20%  Similarity=0.107  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchH---HHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHH
Q 017641          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG---LAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSK  354 (368)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGG---eaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrK  354 (368)
                      .+...+..|..+...|+|.+|+.+|+++.........+..   .+.+..++||-..|+...|+..+++.. -+|.-.-++
T Consensus       157 ~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sr  236 (290)
T d1qqea_         157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR  236 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred             hhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchH
Confidence            3445677899999999999999999999887665544432   344667899999999999999999985 677644443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.25  E-value=0.13  Score=40.01  Aligned_cols=96  Identities=13%  Similarity=0.076  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHh----------cCchhhhhHHHHHHHhhcccCccchHHHH
Q 017641          252 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMD----------SGKLKEALPFYEKVMNKMVFKSELHGLAA  321 (368)
Q Consensus       252 ar~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~Ame----------rGkYr~AV~~lEkA~~~v~~~S~LGGeaq  321 (368)
                      .|-.+..+.+..|.+-+  .+||..-..   .+..|..++.          .+.+.+|+.+|++|+.+=|..    .++-
T Consensus         8 ~r~~~fe~A~~~~e~al--~~~P~~~~~---~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~----~~a~   78 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTY--KSNPLDADN---LTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK----DEAV   78 (145)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHCTTCHHH---HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC----HHHH
T ss_pred             HHHccHHHHHHHHHHHH--hhCCcchHH---HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchh----hHHH
Confidence            44556777788887654  677775433   4555665553          355688999999999876654    4567


Q ss_pred             HHHHHHHHhcCC-----------hHHHHHHHHHHh-cCCCHHHHHHH
Q 017641          322 LQWSICQDSLHR-----------PKEARIMYEKLQ-SHPNALVSKRA  356 (368)
Q Consensus       322 LwLAiAydA~GR-----------~~EAiaLYkkL~-sHP~~eVrKQA  356 (368)
                      .+|++||...|+           .++|+..|++.. -+|+-.+-+++
T Consensus        79 ~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~  125 (145)
T d1zu2a1          79 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS  125 (145)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHH
Confidence            788899877664           689999999985 68876655544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=93.14  E-value=0.2  Score=40.47  Aligned_cols=59  Identities=15%  Similarity=0.192  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHh----cCChHHHHHHHHHHh
Q 017641          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQ  345 (368)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~  345 (368)
                      +..+..|..++.+|+|.+|+.+|++|.+.   +   ..++++.|+++|..    ......|+..|++..
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~---g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~   65 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDL---K---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC   65 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHC---C---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccc
Confidence            46789999999999999999999999764   1   35788889999987    456788888888875

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.14  E-value=0.099  Score=45.09  Aligned_cols=63  Identities=8%  Similarity=-0.081  Sum_probs=50.0

Q ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                      -+..|..++..|+|.+|+.+|++|+.+-+.+.    .+-..++.||..+|+.++|+..|++.. .||+
T Consensus       115 ~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~----~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~  178 (315)
T d2h6fa1         115 WHHRRVLVEWLRDPSQELEFIADILNQDAKNY----HAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR  178 (315)
T ss_dssp             HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred             HHHHhHHHHhhccHHHHHHHHhhhhhhhhcch----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc
Confidence            34448888888899999999999988766653    456668888999999999999998884 6775

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.18  E-value=0.12  Score=44.63  Aligned_cols=86  Identities=9%  Similarity=0.084  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCc-hhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCC
Q 017641          255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGK-LKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR  333 (368)
Q Consensus       255 ~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGk-Yr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR  333 (368)
                      ++..+.|..|.+-.  +++|.....   -+-.|..+...|+ |.+|+.+|++|+..-+..    ..+-..++.+|..+|+
T Consensus        57 e~~~~Al~~~~~ai--~lnP~~~~a---~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~----~~a~~~~~~~~~~l~~  127 (315)
T d2h6fa1          57 ERSERAFKLTRDAI--ELNAANYTV---WHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN----YQVWHHRRVLVEWLRD  127 (315)
T ss_dssp             CCCHHHHHHHHHHH--HHCTTCHHH---HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTC
T ss_pred             CchHHHHHHHHHHH--HHCCCChHH---HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhh----hhHHHHHhHHHHhhcc
Confidence            34455555565333  555655444   2456888888776 999999999999887765    4567778999999999


Q ss_pred             hHHHHHHHHHHh-cCCC
Q 017641          334 PKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       334 ~~EAiaLYkkL~-sHP~  349 (368)
                      .++|+..|++.. .+|.
T Consensus       128 ~~eAl~~~~kal~~dp~  144 (315)
T d2h6fa1         128 PSQELEFIADILNQDAK  144 (315)
T ss_dssp             CTTHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHhhhhhhhhc
Confidence            999999999985 4665

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.10  E-value=0.13  Score=39.99  Aligned_cols=78  Identities=12%  Similarity=0.187  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCc-----------hhhhhHHHHHHHhhcccCccchHHHH
Q 017641          253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGK-----------LKEALPFYEKVMNKMVFKSELHGLAA  321 (368)
Q Consensus       253 r~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGk-----------Yr~AV~~lEkA~~~v~~~S~LGGeaq  321 (368)
                      ......+.+..|++-+  .++|..-..   .+..|..+++.|+           |..|+.+|++|+++-|-+.       
T Consensus        53 ~~~~~~~Ai~~~~kAl--~l~P~~~~a---~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~-------  120 (145)
T d1zu2a1          53 AKQMIQEAITKFEEAL--LIDPKKDEA---VWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT-------  120 (145)
T ss_dssp             HHHHHHHHHHHHHHHH--HHCTTCHHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH-------
T ss_pred             HHHHHHHHHHHHHHHH--HhcchhhHH---HhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHH-------
Confidence            4456778888888765  778876443   5667887777664           7899999999999888653       


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhc
Q 017641          322 LQWSICQDSLHRPKEARIMYEKLQS  346 (368)
Q Consensus       322 LwLAiAydA~GR~~EAiaLYkkL~s  346 (368)
                          +++.++++...|..+|..+.+
T Consensus       121 ----~~~~~L~~~~ka~~~~~e~~k  141 (145)
T d1zu2a1         121 ----HYLKSLEMTAKAPQLHAEAYK  141 (145)
T ss_dssp             ----HHHHHHHHHHTHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHH
Confidence                344555555566666666543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.08  E-value=0.4  Score=36.60  Aligned_cols=61  Identities=8%  Similarity=0.088  Sum_probs=48.2

Q ss_pred             HHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCCh---HHHHHHHHHHhc-CCCHH
Q 017641          287 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP---KEARIMYEKLQS-HPNAL  351 (368)
Q Consensus       287 Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~---~EAiaLYkkL~s-HP~~e  351 (368)
                      ...++..+.|.+|.+.|++|+..-+..    -++.+.+|.||-..++.   ++||.+|+++.. .|++.
T Consensus         6 ~n~~~~~~~l~~Ae~~Y~~aL~~~p~~----~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~   70 (122)
T d1nzna_           6 LNELVSVEDLLKFEKKFQSEKAAGSVS----KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE   70 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCCC----HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCch
Confidence            446778889999999999999976654    46889999999765555   469999999864 56543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=90.67  E-value=0.27  Score=42.54  Aligned_cols=94  Identities=12%  Similarity=-0.057  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch-------------
Q 017641          251 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH-------------  317 (368)
Q Consensus       251 aar~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG-------------  317 (368)
                      +.++-+..+.++.|++-+  ..+|..-..   .+..|+.++..|++.+|+..|+.++++-+......             
T Consensus         6 aL~~G~l~eAl~~l~~al--~~~P~d~~a---r~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~   80 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAI--KASPKDASL---RSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQAR   80 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHH--HTCTTCHHH---HHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHH--HHCCCCHHH---HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccc
Confidence            334456677888887654  555554433   77889999999999999999999988766543221             


Q ss_pred             ------------------HHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641          318 ------------------GLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (368)
Q Consensus       318 ------------------GeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (368)
                                        =...+..+.++...|+.++|+.+|+++. .+|+
T Consensus        81 ~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~  131 (264)
T d1zbpa1          81 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE  131 (264)
T ss_dssp             HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence                              1122334566777788888888888774 4443

>d2ijqa1 a.246.2.1 (A:14-158) Hypothetical protein rrnAC1037 {Haloarcula marismortui [TaxId: 2238]}

class: All alpha proteins
fold: Hyaluronidase domain-like
superfamily: TTHA0068-like
family: TTHA0068-like
domain: Hypothetical protein rrnAC1037
species: Haloarcula marismortui [TaxId: 2238]

Probab=86.89  E-value=0.81  Score=37.86  Aligned_cols=68  Identities=16%  Similarity=0.221  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCc----cchHHHHHHHHHHH-HhcCChHHHHHHHHHHh
Q 017641          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS----ELHGLAALQWSICQ-DSLHRPKEARIMYEKLQ  345 (368)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S----~LGGeaqLwLAiAy-dA~GR~~EAiaLYkkL~  345 (368)
                      +..+.+|..|..+|++|+|-+|=+.||.+-..+..++    -+-|.+|+--|..+ -..|...=|..|+++-.
T Consensus        15 ~t~~~a~~~Gi~lfN~g~y~eaHE~lEe~W~~~~~~~~er~~~QGLIQ~Aaa~~hh~~~gN~~GA~~l~~~al   87 (145)
T d2ijqa1          15 ETLRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL   87 (145)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            4567799999999999999999999999987776654    36688887666553 68899999999998753

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.95  E-value=0.46  Score=39.66  Aligned_cols=58  Identities=14%  Similarity=0.055  Sum_probs=46.9

Q ss_pred             HHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhc-CC
Q 017641          287 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS-HP  348 (368)
Q Consensus       287 Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s-HP  348 (368)
                      |......|++.+|+..|.++...-+.    .-.+-+.++.||...|+.++|+..|+++.. -|
T Consensus       249 ~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP  307 (334)
T d1dcea1         249 VEKSTVLQSELESCKELQELEPENKW----CLLTIILLMRALDPLLYEKETLQYFSTLKAVDP  307 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhhCch----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence            56667778999999999888765543    345677799999999999999999999964 55

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.59  E-value=1.1  Score=31.98  Aligned_cols=44  Identities=14%  Similarity=-0.000  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHH
Q 017641          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSIC  327 (368)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiA  327 (368)
                      ++-....|..++..|+|.+|+.+|++|+++-|.+.    ++...++.+
T Consensus        46 ~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~----~a~~Nl~~~   89 (95)
T d1tjca_          46 VSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ----RANGNLKYF   89 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHH
T ss_pred             HHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCH----HHHHHHHHH
Confidence            34455679999999999999999999999877664    344444443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.47  E-value=8.2  Score=31.65  Aligned_cols=60  Identities=7%  Similarity=0.006  Sum_probs=44.0

Q ss_pred             HHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHH
Q 017641          290 LMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALV  352 (368)
Q Consensus       290 AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eV  352 (368)
                      .+.++.+.+|+..++++++.-+.+.   ......+.++|...++.++|+..|+++. .||+---
T Consensus       119 ~~~~~~~~~a~~~~~~al~~~~~~~---~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~  179 (334)
T d1dcea1         119 RLPEPNWARELELCARFLEADERNF---HCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS  179 (334)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHH
T ss_pred             HhccccHHHHHHHHHHHHhhCchhh---hhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHH
Confidence            3445568999999999998755432   2223345688999999999999999885 7887443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.25  E-value=2.3  Score=34.01  Aligned_cols=74  Identities=9%  Similarity=0.014  Sum_probs=52.9

Q ss_pred             HHHHHHHHHH---hcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHH
Q 017641          282 KALKDGDSLM---DSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRAR  357 (368)
Q Consensus       282 ea~~~Gk~Am---erGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAk  357 (368)
                      ..|.-|-.+.   .....+.||..||.++..-+..   .-+.-..||++|=.+|+.++|+..++++- .-|.-.--+.-+
T Consensus        37 t~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~---~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~  113 (124)
T d2pqrb1          37 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR---RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  113 (124)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchh---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence            3444444454   3466789999999998754322   34777899999999999999999999995 566654333333


Q ss_pred             H
Q 017641          358 Q  358 (368)
Q Consensus       358 r  358 (368)
                      +
T Consensus       114 ~  114 (124)
T d2pqrb1         114 S  114 (124)
T ss_dssp             H
T ss_pred             H
Confidence            3