Citrus Sinensis ID: 017664

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
Protein Sequence
MCVWLWGSTAAGLVEKKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYKPGYPIALVSLGRREGVAHFPFLTISGRIPGWIKSRDLFVGKTRKQLGLKPTVT
Secondary Structure (PSIPRED)
ccEEccccccccccccccEEEEcccHHHHHHHHHccccccEEEEcccccccHHHHHHHHccccccccccccccccccccEEEEEEEEEEEcccEEEEcccEEEEccEEEEEccccccccccHHHHHHHHHHcHHHHHccccEEEEcccHHHHHHHHHHHHcccccEEEEEEccccccccccHHHHHHHHHHHHHcccEEEcccccEEccccccEEEEccccEEEEcEEEEcccccccHHHHHHHcccccccccccEEccccccccccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEccccEEEEcccEEEcccHHHHHHHccHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEcccccccccccEEEEEEccHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHccccHHHcHHHHHHHHccccEEEEEEEEEEccccEEEEEcccEEcccEEEEEcccccccccHHHHHHHHHHHcHHHHHHHcEEEEEcccccHHHHHHHHHccccccEEEEEcccccccccccHHHHHHHHHHHHHcccEEEEccEEEEEccccEEEEEccccEEcccEEEEEccccccHHHHHHHccccccccccEEEEcccccccccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEccccEEEEEcccEEccHHHHHHHcccEEEEEEHHHHccccccc
Coil and Loop (DISEMBL)
mcvwlwgstaaglvekKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYFEITWASLRAVvepsfavrsvinhgdylsNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGhvesvpksrTERLSQYEKDFEKVKSANSVlivgggptgvelageiavdfpdkkvilvhrgpkllefVGSRASQIALDWLTSKKVEVILNQSVTLNTIsdglietssgetidtdchfmcTGKAMASSWLRETILKDsldgrgrlmvdenlrvrgfknvfaigditdipeikqGYLAQKHALVTAKNLKKLMmgrnkgtmatykpgypialvslgrregvahfpfltisgripgwiksrDLFVgktrkqlglkptvt
Flexible Loop (DISEMBL)
MCVWLWGStaaglvekKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGhvesvpksrterLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLmvdenlrvrgfkNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYKPGYPIALVSLGRREGVAHFPfltisgripgwiKSRDlfvgktrkqlglkptvt
Low Complexity Region (SEG)
MCVWLWGSTAAGLvekkkvvvigggvggSLLAYHIQSFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYKPGYPIALVSLGRREGVAHFPFLTISGRIPGWIKSRDLFVGKTRKQLGLKPTVT
Disordered region (IsUnstruct)
*CVWLWGSTAAGLVEKKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVE*******************VKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYKPGYPIALVSLGRREGVAHFPFLTISGRIPGWIKSRDLFVGKT***********
Disordered Region (DISOPRED)
MC*****************VVIGGGVGGSLLAYHIQSFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYKPGYPIALVSLGRREGVAHFPFLTISGRIPGWIKSRDLFVGKTRKQ*GLK****
Disordered Region (DISEMBL)
MCVWLWGSTAAGLVEKKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYKPGYPIALVSLGRREGVAHFPFLTISGRIPGWIKSRDLFVGKTRKQLGLKPTVT
Disordered Region (DISPRO)
MCVWLWGSTAAGLVEKKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYKPGYPIALVSLGRREGVAHFPFLTISGRIPGWIKSRDLFVGKTRKQLGLKPT**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCVWLWGSTAAGLVEKKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYKPGYPIALVSLGRREGVAHFPFLTISGRIPGWIKSRDLFVGKTRKQLGLKPTVT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	368	2.2.26 [Sep-21-2011]
Q54NS9	408	Apoptosis-inducing factor	yes	no	0.959	0.865	0.315	1e-42
Q54NS8	387	Apoptosis-inducing factor	no	no	0.940	0.894	0.313	1e-39
B5FXE5	373	Apoptosis-inducing factor	yes	no	0.850	0.839	0.3	8e-33
Q6GLW8	374	Apoptosis-inducing factor	N/A	no	0.861	0.847	0.302	5e-30
B4F6I3	374	Apoptosis-inducing factor	yes	no	0.861	0.847	0.311	6e-30
Q9BRQ8	373	Apoptosis-inducing factor	yes	no	0.866	0.855	0.302	6e-29
A5PJM4	373	Apoptosis-inducing factor	yes	no	0.858	0.847	0.294	4e-28
Q8BUE4	373	Apoptosis-inducing factor	yes	no	0.858	0.847	0.297	1e-26
P52923	378	Apoptosis-inducing factor	yes	no	0.725	0.706	0.261	1e-14
O05267	406	NADH dehydrogenase-like p	yes	no	0.839	0.761	0.239	9e-14

>sp|Q54NS9|AIFA_DICDI Apoptosis-inducing factor homolog A OS=Dictyostelium discoideum GN=aifA PE=3 SV=1

 Score =  173 bits (439), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 121/384 (31%), Positives = 200/384 (52%), Gaps = 31/384 (8%)

Query: 3   VWLWGSTAAGLVEKKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYFEITWASLRAVVE 62
           ++ + S+     EKK+V++IG G GGS +A  + S  +V +++ K+ F  + AS+RA+VE
Sbjct: 14  IFNYFSSITRDCEKKRVLIIGCGFGGSQVAKLLDSNFEVTVVERKQTFFNSIASIRAIVE 73

Query: 63  PSFAVRSVINHGDYLSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVP-KS 121
           P  A +  I +   L N K +  T + I+ T V    G+   +DY+V+ATG     P K+
Sbjct: 74  PELAKKIYIPYDKLLKNGKFIYGTVIEISPTLVKLEDGKELTFDYLVIATGSNSLAPFKA 133

Query: 122 RTERLS-----QYEKDF-EKVKSANSVLIVGGGPTGVELAGEIAVDFP------DKKVIL 169
             E++S      Y KD  E++K A S+LIVGGG  G E+ GEI   +P       KK+ +
Sbjct: 134 PLEKISGTEIFNYYKDISEQIKQAKSILIVGGGSVGCEVVGEIINKYPIKNKELAKKITI 193

Query: 170 VHRGPKLLEF-VGSRASQIALDWLTSKKVEVILNQSVT---------LNTISDGL----- 214
           VH G KL+     ++ + +  + +  + V VILN  +          +N  S        
Sbjct: 194 VHSGNKLVSSKTNNKFNNLINESMKKRNVSVILNDRIEIPDDIKQCFINQTSPNFQVSLK 253

Query: 215 -IETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAI 273
             +T +G +I++D      G  + S   + T   + ++  G++ V+++ +V+G+ N+FAI
Sbjct: 254 TYKTKNGLSIESDFVIWTIGIKLNSESYK-TNFSNEINEIGQIKVNQSCQVQGYDNIFAI 312

Query: 274 GDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYKPGYPIALVSLGRREGVAH 333
           GDITD  E+K  Y A  H  + AK +K L  G+NK  +A +K   PI  +SLG ++G+  
Sbjct: 313 GDITDFDELKTTYNALSHGNIVAKVIKDLSNGKNKNQLAKHKLLPPIISLSLGPKDGLTQ 372

Query: 334 F-PFLTISGRIPGWIKSRDLFVGK 356
               L     I   +KS +L + +
Sbjct: 373 INSNLNFGSFISRILKSNNLLINR 396

Putative FAD-dependent oxidoreductase.
Dictyostelium discoideum (taxid: 44689)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

>sp|Q54NS8|AIFB_DICDI Apoptosis-inducing factor homolog B OS=Dictyostelium discoideum GN=aifB PE=3 SV=1

 Score =  164 bits (414), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 119/379 (31%), Positives = 187/379 (49%), Gaps = 33/379 (8%)

Query: 15  EKKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHG 74
           EKK+V++IGGG GG  +A  + S  +V +++ K+ F  +  S+RAVVEP    +  I + 
Sbjct: 4   EKKRVLIIGGGYGGCEVAKQLDSKFNVTVVERKQTFFHSVGSVRAVVEPELVKKIYIPYD 63

Query: 75  DYLSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVP-------KSRTERLS 127
             L N K +  T + I+ T      GQ   +DY+V+ATG     P       KS +E L+
Sbjct: 64  KLLKNGKFIFGTVIEISPTLAKLEDGQELTFDYLVIATGSNSLAPFKAPLEKKSSSEILN 123

Query: 128 QYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFP------DKKVILVHRGPKLLE-FV 180
            ++   +++K A S+LIVGGG    EL  EI   +P       KK+ +VH G KL+   +
Sbjct: 124 YFQNFSQQIKQAKSILIVGGGAVACELVSEIVEKYPVKDSELVKKITIVHSGSKLVNPKM 183

Query: 181 GSRASQIALDWLTSKKVEVILNQSVTLN---------------TISDGLIETSSGETIDT 225
             + + +    +  + VEVILN  +T+                 IS     T  G  I  
Sbjct: 184 NDKFTNVVSKAMKKRNVEVILNDRITMPDEIKANLLNQTSPNIQISSQNYTTEKGVPIQA 243

Query: 226 DCHFMCTG-KAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQ 284
           D      G K  + S+  ++   + ++  G+L V+ + +V+G+ NVFAIGD TD  E K 
Sbjct: 244 DLIIWTVGIKTNSESY--QSHFSNVINESGQLKVNLSCQVQGYNNVFAIGDCTDFDEFKT 301

Query: 285 GYLAQKHALVTAKNLKKLMMGRNKGTMATYKPGYPIALVSLGRREGVAHF-PFLTISGRI 343
            Y A  HA + AK +  L  G++   +A +K   PI  +SLG ++G+    P + +    
Sbjct: 302 AYNAGYHAAIAAKAIDALSKGKSNDKLAKHKVSGPILSLSLGPQDGITQISPTMCLGSFA 361

Query: 344 PGWIKSRDLFVGKTRKQLG 362
              IKS+ LF+ +   QL 
Sbjct: 362 TKMIKSKSLFIDRYISQLN 380

Putative FAD-dependent oxidoreductase.

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|B5FXE5|AIFM2_TAEGU Apoptosis-inducing factor 2 OS=Taeniopygia guttata GN=AIFM2 PE=2 SV=1

 Score =  141 bits (356), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 102/340 (30%), Positives = 172/340 (50%), Gaps = 27/340 (7%)

Query: 42  VLIDEKEYFEITWASLRAVVEPSFAVRSVINH----GDYLSNVKIVVSTAVSITDTEVVT 97
           VL+D ++ F    A+LRA VE  FA ++ I++    GD     K+V   A+     +VV 
Sbjct: 37  VLVDVRDAFHHNVAALRAAVESGFAKKTFISYSVTFGDSFRQGKVV---AIDPGRQQVVL 93

Query: 98  AGGQTFVYDYVVVATGHVESVPKSRTE------RLSQYEKDFEKVKSANSVLIVGGGPTG 151
           + G+   Y ++++ATG     P    +       +  YE   ++++ +  +L+VGGG  G
Sbjct: 94  SDGEELHYSHLILATGSDGPFPGKFNQVIDMESAIQTYEDMVKEIEKSQRILVVGGGAAG 153

Query: 152 VELAGEIAVDFPDKKVILVHRGPKL--LEFVGSRASQIALDWLTSKKVEVILNQSVT--- 206
           VE+A EI  ++P K++IL+H    L  +E + S   Q+  + L  K V ++L++ V+   
Sbjct: 154 VEMAAEIKTEYPGKEIILIHSKTALADVELLPS-VRQVVKEILLRKGVRLLLSEKVSDIE 212

Query: 207 ---LNTIS-DGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENL 262
               N    D ++ T  G  +  D   +CTG  + SS        D +   G L V+++L
Sbjct: 213 NLRPNQFQKDMVVRTEKGTEVVVDMVVLCTGIKINSSAY-AAAFGDKMASDGALKVNKHL 271

Query: 263 RVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYKPGYPIAL 322
           ++ G++N++AIGD  D+ E K  Y A  HA V   N   ++    +  + TY+PG    L
Sbjct: 272 QLEGYENIYAIGDCADLKEPKMAYHAGLHANVVVTN---IINSLTQKPLKTYEPGSLTFL 328

Query: 323 VSLGRREGVAHFPFLTISGRIPGWIKSRDLFVGKTRKQLG 362
           +S+GR +GV       +   +    KSRDLFV K+ + +G
Sbjct: 329 LSMGRNDGVGQVNGYYVGRLLVTIAKSRDLFVSKSWRTMG 368

Oxidoreductase, which may play a role in mediating a p53/TP53-dependent apoptosis response. Probable oxidoreductase that acts as a caspase-independent mitochondrial effector of apoptotic cell death. Binds to DNA in a sequence-independent manner. May contribute to genotoxin-induced growth arrest.

Taeniopygia guttata (taxid: 59729)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q6GLW8|AIFM2_XENLA Apoptosis-inducing factor 2 OS=Xenopus laevis GN=aifm2 PE=2 SV=1

 Score =  132 bits (331), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 176/337 (52%), Gaps = 20/337 (5%)

Query: 42  VLIDEKEYFEITWASLRAVVEPSFAVRSVINHGD-YLSNVKIVVSTAVSITDTEVVTAGG 100
           +L+D K+ F    A+LRA VE  FA ++ I++ D +  + K      +++    V+    
Sbjct: 37  LLVDMKDAFHHNVAALRACVESGFARKTFISYKDSFHDSFKQGKVVGINLQTQLVILESN 96

Query: 101 QTFVYDYVVVATGHVESVPKSRTERLSQ------YEKDFEKVKSANSVLIVGGGPTGVEL 154
           +   + ++++ATG     P    E +S+      YE   E+++ A  V++VGGG  GVE+
Sbjct: 97  EELSFSHLIIATGSNGPFPGKFNEVISKDQAIQIYENLVEEIQKAKHVVVVGGGSAGVEM 156

Query: 155 AGEIAVDFPDKKVILVHRGPKLLEF-VGSRASQIALDWLTSKKVEVILNQSVT-LNTISD 212
           A E+  D+P+K+V L+H    L +  +     +   + L  K V +IL Q VT L+ ++ 
Sbjct: 157 AAEVKTDYPEKEVTLIHSKIALADVQLQPSVRRTVKEILLRKGVRLILAQKVTNLDQVTP 216

Query: 213 GLIETS-------SGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVR 265
            + + +         E ++ D    C G  ++SS  R + L D +   G L+V++ L+V+
Sbjct: 217 NVAQENMELQLDKDSEVVNCDLVLCCIGLKVSSSSYR-SALGDKMAEDGSLIVNDYLQVQ 275

Query: 266 GFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYKPGYPIALVSL 325
           G +NV+A+GD   I E K  Y A  HA V A N++  ++G+   ++ +Y PG    L+S+
Sbjct: 276 GHENVYAVGDCAYINEPKMAYYAGIHARVAATNVRNSLIGK---SLKSYIPGALSMLLSM 332

Query: 326 GRREGVAHFPFLTISGRIPGWIKSRDLFVGKTRKQLG 362
           GR +GV  F    +        KSRD+FV K+ K++G
Sbjct: 333 GRNDGVGQFNGYYLGRCFVTMAKSRDIFVSKSWKEMG 369

Oxidoreductase, which may play a role in mediating a p53/TP53-dependent apoptosis response. Probable oxidoreductase that acts as a caspase-independent mitochondrial effector of apoptotic cell death. Binds to DNA in a sequence-independent manner. May contribute to genotoxin-induced growth arrest.

Xenopus laevis (taxid: 8355)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|B4F6I3|AIFM2_XENTR Apoptosis-inducing factor 2 OS=Xenopus tropicalis GN=aifm2 PE=2 SV=1

 Score =  132 bits (331), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 105/337 (31%), Positives = 175/337 (51%), Gaps = 20/337 (5%)

Query: 42  VLIDEKEYFEITWASLRAVVEPSFAVRSVINHGD-YLSNVKIVVSTAVSITDTEVVTAGG 100
           VL+D K+ F    A+LRA VE  FA ++ I++ D +  N        +++    V+    
Sbjct: 37  VLVDLKDAFHHNVAALRASVESGFARKTFISYKDTFQDNFIQGKVVGINLQTQRVILESN 96

Query: 101 QTFVYDYVVVATGHVESVPK------SRTERLSQYEKDFEKVKSANSVLIVGGGPTGVEL 154
           +   + ++++ATG     P       S+ + +  YE   ++++ A  V++VGGG  GVE+
Sbjct: 97  EELQFSHLIIATGSNGPFPGKINNVISKDQAIQVYEDLVKEIQKAKHVVVVGGGSAGVEM 156

Query: 155 AGEIAVDFPDKKVILVHRGPKLLEF-VGSRASQIALDWLTSKKVEVILNQSVT-LNTISD 212
           A E+  D+P+K+V LVH    L +  +  +  +   + L SK V +IL Q VT L+ ++ 
Sbjct: 157 AAEVKTDYPEKEVTLVHSKVALADVQLQPKVRRTVKEILLSKGVRLILAQKVTNLDQVTS 216

Query: 213 GLIETSS-------GETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVR 265
            + + ++        E +  D    CTG  ++SS        D L   G L+V++ L+V+
Sbjct: 217 NVAQENTVLQLDKNSEVVTCDLVLCCTGYKISSSSYSSA-FGDKLAEDGALIVNDYLQVQ 275

Query: 266 GFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYKPGYPIALVSL 325
           G  NV+A+GD   I E K  Y A  HA V A N++  ++G+   ++ TYKPG    L+S+
Sbjct: 276 GHANVYAVGDCAYINEPKMAYYAGIHARVAATNVRNSLIGK---SLKTYKPGALSMLLSM 332

Query: 326 GRREGVAHFPFLTISGRIPGWIKSRDLFVGKTRKQLG 362
           GR +GV  F    +        KSRD+FV K+ K++G
Sbjct: 333 GRNDGVGQFNGCYLGRFFVTMAKSRDIFVSKSWKEMG 369

Oxidoreductase, which may play a role in mediating a p53/TP53-dependent apoptosis response. Probable oxidoreductase that acts as a caspase-independent mitochondrial effector of apoptotic cell death. Binds to DNA in a sequence-independent manner. May contribute to genotoxin-induced growth arrest.

Xenopus tropicalis (taxid: 8364)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q9BRQ8|AIFM2_HUMAN Apoptosis-inducing factor 2 OS=Homo sapiens GN=AIFM2 PE=1 SV=1

 Score =  128 bits (322), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 172/340 (50%), Gaps = 21/340 (6%)

Query: 42  VLIDEKEYFEITWASLRAVVEPSFAVRSVINHG-DYLSNVKIVVSTAVSITDTEVVTAGG 100
           +L+D K+ F    A+LRA VE  FA ++ I++   +  N +  +   + + +  V+  GG
Sbjct: 38  MLVDMKDSFHHNVAALRASVETGFAKKTFISYSVTFKDNFRQGLVVGIDLKNQMVLLQGG 97

Query: 101 QTFVYDYVVVATGHVESVPKSRTERLSQ------YEKDFEKVKSANSVLIVGGGPTGVEL 154
           +   + ++++ATG     P    E  SQ      YE    +V+ +  +++VGGG  GVE+
Sbjct: 98  EALPFSHLILATGSTGPFPGKFNEVSSQQAAIQAYEDMVRQVQRSRFIVVVGGGSAGVEM 157

Query: 155 AGEIAVDFPDKKVILVHRGPKLL--EFVGSRASQIALDWLTSKKVEVILNQSVT------ 206
           A EI  ++P+K+V L+H    L   E + S   ++  + L  K V+++L++ V+      
Sbjct: 158 AAEIKTEYPEKEVTLIHSQVALADKELLPSVRQEVK-EILLRKGVQLLLSERVSNLEELP 216

Query: 207 LNTISDGL-IETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVR 265
           LN   + + ++T  G  + T+   +CTG  + SS  R+   +  L   G L V+E+L+V 
Sbjct: 217 LNEYREYIKVQTDKGTEVATNLVILCTGIKINSSAYRKA-FESRLASSGALRVNEHLQVE 275

Query: 266 GFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYKPGYPIALVSL 325
           G  NV+AIGD  D+   K  YLA  HA +   N+   +  R    +  YKPG    L+S+
Sbjct: 276 GHSNVYAIGDCADVRTPKMAYLAGLHANIAVANIVNSVKQR---PLQAYKPGALTFLLSM 332

Query: 326 GRREGVAHFPFLTISGRIPGWIKSRDLFVGKTRKQLGLKP 365
           GR +GV       +   +    KSRDLFV  + K +   P
Sbjct: 333 GRNDGVGQISGFYVGRLMVRLTKSRDLFVSTSWKTMRQSP 372

Oxidoreductase, which may play a role in mediating a p53/TP53-dependent apoptosis response. Probable oxidoreductase that acts as a caspase-independent mitochondrial effector of apoptotic cell death. Binds to DNA in a sequence-independent manner. May contribute to genotoxin-induced growth arrest.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|A5PJM4|AIFM2_BOVIN Apoptosis-inducing factor 2 OS=Bos taurus GN=AIFM2 PE=2 SV=1

 Score =  125 bits (315), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 101/343 (29%), Positives = 170/343 (49%), Gaps = 27/343 (7%)

Query: 42  VLIDEKEYFEITWASLRAVVEPSFAVRSVINHG-DYLSNVKIVVSTAVSITDTEVVTAGG 100
           VL+D K+ F    A+LRA VE  FA ++ I++   +  N +  +   + + +  V+   G
Sbjct: 38  VLVDMKDSFHHNVAALRASVESGFAKKTFISYSVTFKENFRQGLVVEIDLKNQTVLLEDG 97

Query: 101 QTFVYDYVVVATGHVESVP------KSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVEL 154
           Q   + ++++ATG     P       S+   +  YE    +V+ + S+++VGGG  GVE+
Sbjct: 98  QALPFSHLILATGSTGLFPGKFNQVSSQQMAIQAYEDMVTQVQRSQSIVVVGGGSAGVEM 157

Query: 155 AGEIAVDFPDKKVILVHR-----GPKLLEFVGSRASQIALDWLTSKKVEVILNQSVT--- 206
           A EI  ++P+K+V L+H        +LL  V     +I    L  K V+++L++ V+   
Sbjct: 158 AAEIKTEYPEKEVTLIHSKMALADTELLPCVRQEVKEI----LLRKGVQLLLSERVSNLE 213

Query: 207 ---LNTISDGL-IETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENL 262
              +N   + + ++T  G  +D +   +C G  + S+  R +   D L   G L V+E L
Sbjct: 214 ALPVNERRECIKVQTDKGTEVDANLVIVCNGIKINSAAYR-SAFGDRLASNGALRVNEYL 272

Query: 263 RVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYKPGYPIAL 322
           +V G+ +++AIGD  D+ E K  Y A  HA V   N+   M  R    + TYKPG    L
Sbjct: 273 QVEGYSHIYAIGDCADVREPKMAYHASLHANVAVANIVNSMKQR---PLKTYKPGSLTFL 329

Query: 323 VSLGRREGVAHFPFLTISGRIPGWIKSRDLFVGKTRKQLGLKP 365
           +++GR +GV       +   +    KSRDL V  + K +   P
Sbjct: 330 LAMGRNDGVGQISGFYVGRLMVRLAKSRDLLVSTSWKTMKQSP 372

Oxidoreductase, which may play a role in mediating a p53/TP53-dependent apoptosis response. Probable oxidoreductase that acts as a caspase-independent mitochondrial effector of apoptotic cell death. Binds to DNA in a sequence-independent manner. May contribute to genotoxin-induced growth arrest.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8BUE4|AIFM2_MOUSE Apoptosis-inducing factor 2 OS=Mus musculus GN=Aifm2 PE=2 SV=1

 Score =  120 bits (301), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/343 (29%), Positives = 168/343 (48%), Gaps = 27/343 (7%)

Query: 42  VLIDEKEYFEITWASLRAVVEPSFAVRSVINH-GDYLSNVKIVVSTAVSITDTEVVTAGG 100
           +L+D K+ F    A+LRA VE  FA ++ I++   +  N +      + + +  V+  GG
Sbjct: 38  MLVDMKDSFHHNVAALRASVESGFAKKTFISYSATFKDNFRQGKVIGIDLKNRMVLLQGG 97

Query: 101 QTFVYDYVVVATGHVESVPKSRTERLSQ------YEKDFEKVKSANSVLIVGGGPTGVEL 154
           +   + ++++ATG     P    E   Q      YE   ++++ +  +++VGGG  GVE+
Sbjct: 98  EALPFSHLILATGSTGPFPGKFNEVSCQQAAIQAYEDMVKQIQRSQFIVVVGGGSAGVEM 157

Query: 155 AGEIAVDFPDKKVILVH-RGP----KLLEFVGSRASQIALDWLTSKKVEVILNQSVT--- 206
           A EI  ++P+K+V L+H R P    +LL  V     +I    L  K V+++L++ V+   
Sbjct: 158 AAEIKTEYPEKEVTLIHSRVPLADKELLPCVRQEVKEI----LLRKGVQLLLSERVSNLE 213

Query: 207 ---LNTISDGL-IETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENL 262
               N   + + +ET  G  + T+   +C G  + SS  R +  +  L   G L V+E L
Sbjct: 214 ELPRNEYREYIKVETDKGTEVATNMVIVCNGIKINSSAYR-SAFESRLASNGALKVNEFL 272

Query: 263 RVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYKPGYPIAL 322
           +V G+ N++AIGD  D  E K  Y A  HA V   N+   M  R    +  YKPG    L
Sbjct: 273 QVEGYSNIYAIGDCADTKEPKMAYHAGLHANVAVANIVNSMKQR---PLKAYKPGALTFL 329

Query: 323 VSLGRREGVAHFPFLTISGRIPGWIKSRDLFVGKTRKQLGLKP 365
           +S+GR +GV       +   +    KSRDL +  + K +   P
Sbjct: 330 LSMGRNDGVGQISGFYVGRLMVRLAKSRDLLISTSWKTMRQSP 372

Oxidoreductase, which may play a role in mediating a p53/TP53-dependent apoptosis response. Probable oxidoreductase that acts as a caspase-independent mitochondrial effector of apoptotic cell death (By similarity). May contribute to genotoxin-induced growth arrest.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P52923|AIF1_YEAST Apoptosis-inducing factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AIF1 PE=1 SV=1

 Score = 80.9 bits (198), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 141/313 (45%), Gaps = 46/313 (14%)

Query: 78  SNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQ-----YEKD 132
           S ++++  TA S  D EVV    +   +D +V+ATG   + P   T          +E++
Sbjct: 71  SGIEVIKDTAASFDDKEVVLGSDRAIKFDILVLATGSKWADPIGSTYTFGDNYKEYFERE 130

Query: 133 FEKVKSANSVLIVGGGPTGVELAGEIAVDFPD------KKVILVHRGPKLLEFVGSRASQ 186
             ++  A+ +L +GGG    ELAGE+   + +      K++ ++H   KLL   G     
Sbjct: 131 ASRISDADHILFLGGGFVNCELAGELLFKYLEEIRSGKKRISIIHNSDKLLPDSGLYNDT 190

Query: 187 I---ALDWLTSKKVEVILNQ-SVTLNTISDGL-IETSSGETIDTDCHFMCTGKAMASSWL 241
           +     D+L+   + + LN    +L+T    + +   S + ID D  +   G    S  +
Sbjct: 191 LRKNVTDYLSKNGITLYLNTVGASLDTSPKRIFLGEGSSKYIDADLIYRGVG---ISPNV 247

Query: 242 RETILKDSLDGRGRLMVDENLRVRGFK--NVFAIGDITDIPEIKQGYLAQKHALVTAKN- 298
               + D  D +G + V++N RV+  +  NVFAIGD+T+          + H LV   N 
Sbjct: 248 PVNSISDLCDKKGFIQVEKNFRVKAVEAGNVFAIGDVTNF---------RYHGLVKRDNW 298

Query: 299 ----LKKLMMGRNKGTMAT------YKPGYPIALVSLGRREGVAHFPF-LTISGRIPGWI 347
                + ++    +GT A+       + G+  + VSLG   G   FP  L  +  IP ++
Sbjct: 299 VDVLTRNVISSLQEGTEASLVDADCLETGHAPSGVSLGPNAGFGQFPLPLLGTINIPSFL 358

Query: 348 ----KSRDLFVGK 356
               KS++LF  K
Sbjct: 359 ISRAKSKNLFSDK 371

Putative FAD-dependent oxidoreductase involved in the resistance to cercosporin and other singlet oxygen-generating photosensitizers. Translocates from mitochondria to the nucleus under apoptotic conditions, where it degrades DNA and induces apoptosis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|O05267|YUMB_BACSU NADH dehydrogenase-like protein YumB OS=Bacillus subtilis (strain 168) GN=yumB PE=3 SV=1

 Score = 78.2 bits (191), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 147/372 (39%), Gaps = 63/372 (16%)

Query: 14  VEKKKVVVIGGGVGGSLLAYHIQSF-----ADVVLIDEKEY-FEITW-----ASLRAVVE 62
           + K K+V++G G GG +    +  +     AD+ L+++  Y +E TW     A       
Sbjct: 3   LNKPKIVILGAGYGGLMTVTRLTKYVGPNDADITLVNKHNYHYETTWMHEASAGTLHHDR 62

Query: 63  PSFAVRSVINHGDYLSNVKIVVST--AVSITDTEVVTAGGQTFVYDYVVVATGHVES--- 117
             + ++ VIN     S V  V  T  A+ I + +VV A G+   YDY+V+  G V     
Sbjct: 63  CRYQIKDVINQ----SRVNFVQDTVKAIKIDEKKVVLANGE-LQYDYLVIGLGAVPETFG 117

Query: 118 ----------VPKSRTERL---------SQYEKDFEKVKSANSVLIVGGGPTGVELAGEI 158
                     +    T RL         + Y  + EK     ++++ G G TG+E  GE+
Sbjct: 118 IKGLKEYAFPIANINTSRLLREHIELQFATYNTEAEKRPDRLTIVVGGAGFTGIEFLGEL 177

Query: 159 AVDFPDK-----------KVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTL 207
           A   P+            ++I V   P +L          A+ +L    VE  +  +V  
Sbjct: 178 AARVPELCKEYDVDRSLVRIICVEAAPTVLPGFDPELVDYAVHYLEENGVEFKIGTAVQE 237

Query: 208 NTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGF 267
            T     +     E        +     +    + E    +++  RGR+ V+ +LR  G 
Sbjct: 238 CTPEGVRVGKKDEEPEQIKSQTVVWAAGVRGHPIVEEAGFENM--RGRVKVNPDLRAPGH 295

Query: 268 KNVFAIGDI-------TDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYKPGYPI 320
            NVF +GD        T+ P      +A +  +  AKNL +L+ G   G +  +KP    
Sbjct: 296 DNVFILGDSSLFMNEDTERPYPPTAQIAMQQGITVAKNLGRLIKG---GELEEFKPDIKG 352

Query: 321 ALVSLGRREGVA 332
            + SLG    V 
Sbjct: 353 TVASLGEHNAVG 364

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	368
359487025	365	PREDICTED: apoptosis-inducing factor hom	0.956	0.964	0.710	1e-147
147860316	365	hypothetical protein VITISV_040675 [Viti	0.956	0.964	0.704	1e-146
449434520	367	PREDICTED: apoptosis-inducing factor hom	0.953	0.956	0.669	1e-136
449434522	361	PREDICTED: apoptosis-inducing factor hom	0.915	0.933	0.670	1e-135
15229901	367	FAD/NAD(P)-binding oxidoreductase family	0.953	0.956	0.643	1e-132
297818884	367	pyridine nucleotide-disulfide oxidoreduc	0.953	0.956	0.643	1e-132
34581771	319	pyridine nucleotide-disulphide oxidoredu	0.866	1.0	0.677	1e-129
255565779	363	apoptosis-inducing factor, putative [Ric	0.945	0.958	0.649	1e-129
224059230	362	predicted protein [Populus trichocarpa]	0.953	0.969	0.639	1e-129
356542786	361	PREDICTED: apoptosis-inducing factor hom	0.961	0.980	0.623	1e-129

>gi|359487025|ref|XP_002266714.2| PREDICTED: apoptosis-inducing factor homolog A-like [Vitis vinifera] gi|296084446|emb|CBI25005.3| unnamed protein product [Vitis vinifera]

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 250/352 (71%), Positives = 299/352 (84%)

Query: 17  KKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDY 76
           K+VV++GGG+ GSLLA  +Q  AD+ L+D KEYFEI WASLRA+VEPSFA R+VINH DY
Sbjct: 14  KRVVILGGGIAGSLLAKSLQFRADIFLVDPKEYFEIPWASLRAMVEPSFAERTVINHSDY 73

Query: 77  LSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQYEKDFEKV 136
           L+N K+VVSTAV+I D EV+T+ GQ   YDY+V+ATGH++ VPK+RTERL QY+ + EK+
Sbjct: 74  LTNGKLVVSTAVNIRDNEVLTSSGQWIAYDYLVIATGHLDHVPKTRTERLEQYQAESEKI 133

Query: 137 KSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKK 196
           KSANS+LIVGGGPTGVELAGEI VDFPDKKV LVHRG +LLEF+G++AS+ ALDWLTSKK
Sbjct: 134 KSANSILIVGGGPTGVELAGEIVVDFPDKKVTLVHRGSRLLEFIGAKASKKALDWLTSKK 193

Query: 197 VEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRL 256
           VEV+LNQSV +NT SDG  +TS GETI  DCHF+CTGK + SSWL++TILKD+LDG G+L
Sbjct: 194 VEVLLNQSVDINTASDGTYQTSGGETIRADCHFVCTGKPIGSSWLKDTILKDNLDGHGKL 253

Query: 257 MVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYKP 316
           +VD+NLRVRG KNVFAIGDIT IPEI+QGYLAQ+HA+V AKN+K LM G  +  +ATYKP
Sbjct: 254 VVDDNLRVRGLKNVFAIGDITAIPEIQQGYLAQRHAVVAAKNIKMLMSGEKETKLATYKP 313

Query: 317 GYPIALVSLGRREGVAHFPFLTISGRIPGWIKSRDLFVGKTRKQLGLKPTVT 368
           G  IA+VSLGRR+ VA  PF TI G IPG IKSRDLFVGKTRKQ+GLKPT+T
Sbjct: 314 GSAIAIVSLGRRDAVAQLPFATICGCIPGMIKSRDLFVGKTRKQMGLKPTLT 365

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147860316|emb|CAN79702.1| hypothetical protein VITISV_040675 [Vitis vinifera]

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 248/352 (70%), Positives = 298/352 (84%)

Query: 17  KKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDY 76
           K+VV++GGG+ GSLLA  +Q  AD+ L+D KEYFEI WASLRA+VEPSFA R+VINH DY
Sbjct: 14  KRVVILGGGIAGSLLAKSLQFRADIFLVDPKEYFEIPWASLRAMVEPSFAERTVINHSDY 73

Query: 77  LSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQYEKDFEKV 136
           L+N ++VVSTA +I D EV+T+ GQ   YDY+V+ATGH++ VPK+RTERL QY+ + EK+
Sbjct: 74  LTNGQLVVSTAXNIRDNEVLTSSGQWIAYDYLVIATGHLDHVPKTRTERLKQYQAESEKI 133

Query: 137 KSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKK 196
           KSANS+LIVGGGPTGVELAGEI VDFPDKKV LVHRG +LLEF+G++AS+ ALDWLTSKK
Sbjct: 134 KSANSILIVGGGPTGVELAGEIVVDFPDKKVTLVHRGSRLLEFIGAKASKKALDWLTSKK 193

Query: 197 VEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRL 256
           VEV+LNQSV +NT SDG  +TS GETI  DCHF+CTGK + SSWL++TILKD+LDG G+L
Sbjct: 194 VEVLLNQSVDINTASDGTYQTSGGETIXADCHFVCTGKPIGSSWLKDTILKDNLDGHGKL 253

Query: 257 MVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYKP 316
           +VD+NLRVRG KNVFAIGDIT IPEI+QGYLAQ+HA+V AKN+K LM G  +  +ATYKP
Sbjct: 254 VVDDNLRVRGLKNVFAIGDITAIPEIQQGYLAQRHAVVAAKNIKMLMSGEKETKLATYKP 313

Query: 317 GYPIALVSLGRREGVAHFPFLTISGRIPGWIKSRDLFVGKTRKQLGLKPTVT 368
           G  IA+VSLGRR+ VA  PF TI G IPG IKSRDLFVGKTRKQ+GLKPT+T
Sbjct: 314 GSAIAIVSLGRRDAVAQLPFATICGCIPGMIKSRDLFVGKTRKQMGLKPTLT 365

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434520|ref|XP_004135044.1| PREDICTED: apoptosis-inducing factor homolog A-like isoform 1 [Cucumis sativus] gi|449522009|ref|XP_004168021.1| PREDICTED: apoptosis-inducing factor homolog A-like isoform 1 [Cucumis sativus]

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 235/351 (66%), Positives = 295/351 (84%)

Query: 15  EKKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHG 74
           +KK+VV++GGG+GG+ +AY +Q  ADVVLID+KEYFEI+WA LR++VEPSFA RSVINH 
Sbjct: 17  DKKRVVIVGGGIGGAFVAYSLQFVADVVLIDQKEYFEISWAGLRSMVEPSFAERSVINHT 76

Query: 75  DYLSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQYEKDFE 134
           DYL N +I+ S+A SITD EV  + G +  YDY++VATGH E++PKSRTERL QY+ + E
Sbjct: 77  DYLPNARIIASSATSITDKEVFVSDGSSVPYDYLIVATGHKENIPKSRTERLGQYQAECE 136

Query: 135 KVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTS 194
           K+KSA+++LI+GGGPTGVELA EIAVDFP+K + L+HRGP+L+EFVG +ASQ ALDWLTS
Sbjct: 137 KIKSADTILIIGGGPTGVELAAEIAVDFPEKNLKLIHRGPRLMEFVGVKASQKALDWLTS 196

Query: 195 KKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRG 254
           KKVEVIL QS+++  +S+G+ +TS GETI  DCHFMCTGK + S WL+ET+L  SLD  G
Sbjct: 197 KKVEVILQQSISMQALSEGVYQTSGGETIAADCHFMCTGKPIGSQWLKETVLAKSLDIHG 256

Query: 255 RLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATY 314
           RLMVD++LRVRGFKNVFA+GDITD+ EIKQGYLA++HA VT+KNLK ++ G N+  +ATY
Sbjct: 257 RLMVDKHLRVRGFKNVFAVGDITDLQEIKQGYLAERHAHVTSKNLKLMLAGANESRLATY 316

Query: 315 KPGYPIALVSLGRREGVAHFPFLTISGRIPGWIKSRDLFVGKTRKQLGLKP 365
           KPG  +A+VSLGR+EGVA  PF+TISG IPG IKS DLFVGKTRK+LGL P
Sbjct: 317 KPGSQLAIVSLGRKEGVAQLPFITISGCIPGLIKSGDLFVGKTRKELGLAP 367

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434522|ref|XP_004135045.1| PREDICTED: apoptosis-inducing factor homolog A-like isoform 2 [Cucumis sativus] gi|449522011|ref|XP_004168022.1| PREDICTED: apoptosis-inducing factor homolog A-like isoform 2 [Cucumis sativus]

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 226/337 (67%), Positives = 281/337 (83%)

Query: 29  SLLAYHIQSFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVSTAV 88
           + +AY +Q  ADVVLID+KEYFEI+WA LR++VEPSFA RSVINH DYL N +I+ S+A 
Sbjct: 25  AFVAYSLQFVADVVLIDQKEYFEISWAGLRSMVEPSFAERSVINHTDYLPNARIIASSAT 84

Query: 89  SITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQYEKDFEKVKSANSVLIVGGG 148
           SITD EV  + G +  YDY++VATGH E++PKSRTERL QY+ + EK+KSA+++LI+GGG
Sbjct: 85  SITDKEVFVSDGSSVPYDYLIVATGHKENIPKSRTERLGQYQAECEKIKSADTILIIGGG 144

Query: 149 PTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLN 208
           PTGVELA EIAVDFP+K + L+HRGP+L+EFVG +ASQ ALDWLTSKKVEVIL QS+++ 
Sbjct: 145 PTGVELAAEIAVDFPEKNLKLIHRGPRLMEFVGVKASQKALDWLTSKKVEVILQQSISMQ 204

Query: 209 TISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFK 268
            +S+G+ +TS GETI  DCHFMCTGK + S WL+ET+L  SLD  GRLMVD++LRVRGFK
Sbjct: 205 ALSEGVYQTSGGETIAADCHFMCTGKPIGSQWLKETVLAKSLDIHGRLMVDKHLRVRGFK 264

Query: 269 NVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYKPGYPIALVSLGRR 328
           NVFA+GDITD+ EIKQGYLA++HA VT+KNLK ++ G N+  +ATYKPG  +A+VSLGR+
Sbjct: 265 NVFAVGDITDLQEIKQGYLAERHAHVTSKNLKLMLAGANESRLATYKPGSQLAIVSLGRK 324

Query: 329 EGVAHFPFLTISGRIPGWIKSRDLFVGKTRKQLGLKP 365
           EGVA  PF+TISG IPG IKS DLFVGKTRK+LGL P
Sbjct: 325 EGVAQLPFITISGCIPGLIKSGDLFVGKTRKELGLAP 361

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229901|ref|NP_190005.1| FAD/NAD(P)-binding oxidoreductase family protein [Arabidopsis thaliana] gi|7635464|emb|CAB88427.1| putative protein [Arabidopsis thaliana] gi|21536882|gb|AAM61214.1| unknown [Arabidopsis thaliana] gi|25083044|gb|AAN72037.1| putative protein [Arabidopsis thaliana] gi|30725576|gb|AAP37810.1| At3g44190 [Arabidopsis thaliana] gi|332644353|gb|AEE77874.1| FAD/NAD(P)-binding oxidoreductase family protein [Arabidopsis thaliana]

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 227/353 (64%), Positives = 286/353 (81%), Gaps = 2/353 (0%)

Query: 17  KKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDY 76
           K+V+VIGGG+ GSL +  +Q  +D+ LID KEYFEI WASLR++VEP+FA RSVINH  Y
Sbjct: 12  KRVIVIGGGIAGSLASKFLQFDSDLTLIDPKEYFEIIWASLRSMVEPAFAERSVINHKKY 71

Query: 77  LSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQYEKDFEKV 136
           L N ++V S AV+ITDT+V+TA G  F YDY+V+ATGH + +PK+R E+LSQY+ + EK+
Sbjct: 72  LQNGRVVTSPAVNITDTDVLTADGLVFGYDYLVIATGHNDVLPKTRQEKLSQYQTEHEKI 131

Query: 137 KSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKK 196
           KS+ S+LIVGGGP+GVELA EIAVDFP+KKV +VH GP+LLEFVG +A+  ALDW+ SK+
Sbjct: 132 KSSESILIVGGGPSGVELAAEIAVDFPEKKVTIVHNGPRLLEFVGQKAADKALDWMKSKR 191

Query: 197 VEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRG 254
           VEVILNQ V L++ SDG     TS GETI  DCHF+CTGK ++S WL+ T+LKD+LDG+G
Sbjct: 192 VEVILNQRVDLSSASDGSKTYRTSGGETIHADCHFLCTGKPLSSEWLKGTVLKDNLDGKG 251

Query: 255 RLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATY 314
           RLMVDE LRV+G KNVFAIGDITD+PE+KQGY+A+KHA V  KN+K LM G N+  M+TY
Sbjct: 252 RLMVDEYLRVKGRKNVFAIGDITDVPEMKQGYIAEKHASVATKNIKLLMSGGNEKKMSTY 311

Query: 315 KPGYPIALVSLGRREGVAHFPFLTISGRIPGWIKSRDLFVGKTRKQLGLKPTV 367
           KPG  IA++SLGR++ VA FPF+T+SG IPG IKS+DLFVGKTRK  GL P +
Sbjct: 312 KPGPDIAIISLGRKDSVAQFPFMTVSGCIPGLIKSKDLFVGKTRKARGLDPNL 364

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818884|ref|XP_002877325.1| pyridine nucleotide-disulfide oxidoreductase family protein [Arabidopsis lyrata subsp. lyrata] gi|297323163|gb|EFH53584.1| pyridine nucleotide-disulfide oxidoreductase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 227/353 (64%), Positives = 285/353 (80%), Gaps = 2/353 (0%)

Query: 17  KKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDY 76
           ++VVVIGGG+ GSL +  +Q  +D+ LID KEYFEI WASLR++VEPSFA RSVINH  Y
Sbjct: 12  RRVVVIGGGIAGSLASKFLQFDSDLTLIDPKEYFEIIWASLRSMVEPSFAERSVINHKKY 71

Query: 77  LSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQYEKDFEKV 136
           L N ++V S AV+ITDT+VVTA G  F YDY+V+ATGH + +PK+R E+LSQY+ ++EK+
Sbjct: 72  LQNGRVVTSPAVNITDTDVVTADGLVFGYDYLVIATGHNDVLPKTRQEKLSQYQAEYEKI 131

Query: 137 KSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKK 196
           KS+ S+LIVGGGP+GVELA EIAVDFP+KKV +VH GP+LLEFVG +A+  A DW+ SK+
Sbjct: 132 KSSESILIVGGGPSGVELAAEIAVDFPEKKVTIVHNGPRLLEFVGQKAADKAFDWMKSKR 191

Query: 197 VEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRG 254
           VEVILNQ V L++ SDG     TS GETI  DCHF+CTGK ++S WL+ T+LKD+LDG+G
Sbjct: 192 VEVILNQRVDLSSASDGNKTYRTSGGETIHADCHFLCTGKPLSSEWLKGTVLKDNLDGKG 251

Query: 255 RLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATY 314
           RLMVDE LRV+G KNVFAIGDITD+ E+KQGY+A+KHA V  KN+K LM G N+  M+TY
Sbjct: 252 RLMVDEYLRVKGRKNVFAIGDITDVLEMKQGYIAEKHASVATKNIKLLMSGGNEKKMSTY 311

Query: 315 KPGYPIALVSLGRREGVAHFPFLTISGRIPGWIKSRDLFVGKTRKQLGLKPTV 367
           KPG  IA++SLGR++ VA FPF+T+SG IPG IKS+DLFVGKTRK  GL P +
Sbjct: 312 KPGPDIAIISLGRKDSVAQFPFMTVSGCIPGLIKSKDLFVGKTRKARGLDPNI 364

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|34581771|gb|AAQ76041.1| pyridine nucleotide-disulphide oxidoreductase [Cucumis sativus]

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 216/319 (67%), Positives = 267/319 (83%)

Query: 47  KEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVSTAVSITDTEVVTAGGQTFVYD 106
           KEYFEI+WA LR++VEPSFA RSVINH DYL N +I+ S+A SITD EV  + G +  YD
Sbjct: 1   KEYFEISWAGLRSMVEPSFAERSVINHTDYLPNARIIASSATSITDKEVFVSDGSSVPYD 60

Query: 107 YVVVATGHVESVPKSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKK 166
           Y++VATGH E++PKSRTERL QY+ + EK+KSA+++LI+GGGPTGVELA EIAVDFP+K 
Sbjct: 61  YLIVATGHKENIPKSRTERLGQYQAECEKIKSADTILIIGGGPTGVELAAEIAVDFPEKN 120

Query: 167 VILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTD 226
           + L+HRGP+L+EFVG +ASQ ALDWLTSKKVEVIL QS+++  +S+G+ +TS GETI  D
Sbjct: 121 LKLIHRGPRLMEFVGVKASQKALDWLTSKKVEVILQQSISMQALSEGVYQTSGGETIAAD 180

Query: 227 CHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGY 286
           CHFMCTGK + S WL+ET+L  SLD  GRLMVD++LRVRGFKNVFA+GDITD+ EIKQGY
Sbjct: 181 CHFMCTGKPIGSQWLKETVLAKSLDIHGRLMVDKHLRVRGFKNVFAVGDITDLQEIKQGY 240

Query: 287 LAQKHALVTAKNLKKLMMGRNKGTMATYKPGYPIALVSLGRREGVAHFPFLTISGRIPGW 346
           LA++HA VT+KNLK ++ G N+  +ATYKPG  +A+VSLGR+EGVA  PF+TISG IPG 
Sbjct: 241 LAERHAHVTSKNLKLMLAGANESRLATYKPGSQLAIVSLGRKEGVAQLPFITISGCIPGL 300

Query: 347 IKSRDLFVGKTRKQLGLKP 365
           IKS DLFVGKTRK+LGL P
Sbjct: 301 IKSGDLFVGKTRKELGLAP 319

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565779|ref|XP_002523879.1| apoptosis-inducing factor, putative [Ricinus communis] gi|223536967|gb|EEF38605.1| apoptosis-inducing factor, putative [Ricinus communis]

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/354 (64%), Positives = 282/354 (79%), Gaps = 6/354 (1%)

Query: 16  KKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGD 75
           K++VVVIGGG+ GSL+A ++Q  A + L+D KEYFEITWA+LRA+VEPSFA RSVINH D
Sbjct: 10  KRRVVVIGGGIAGSLIAKNLQFDAHLTLVDPKEYFEITWANLRALVEPSFAERSVINHRD 69

Query: 76  YLSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQYEKDFEK 135
           Y +N +I+ S+AV +TD +V+TA GQ   YDY+V+ATGH +SVPK+RTERL++Y+   EK
Sbjct: 70  YFTNGRIIASSAVDVTDADVLTADGQVIPYDYLVIATGHADSVPKTRTERLTEYQAGNEK 129

Query: 136 VKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSK 195
           +KSA+S+LIVGGGPTGVELAGEIA DFP+KKV LVH G +L+EF+G +A+   L WL SK
Sbjct: 130 IKSAHSILIVGGGPTGVELAGEIAADFPEKKVTLVHDGSRLMEFIGPKAANKTLKWLRSK 189

Query: 196 KVEVILNQSVTLNTI--SDG----LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDS 249
            VEV L Q V LN+I  SDG       TS+GETI  DCHF+CTG  + S+WL++T+LK++
Sbjct: 190 NVEVKLEQRVDLNSITGSDGNCTKTYHTSAGETIKADCHFLCTGIPLGSAWLKDTVLKNN 249

Query: 250 LDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKG 309
           LD  GRL VDE LRVRG+KN+FAIGDIT+IPEIKQGYLA+ HA V A NLK LM G  + 
Sbjct: 250 LDANGRLEVDEYLRVRGWKNIFAIGDITNIPEIKQGYLAESHADVAAGNLKLLMAGGKES 309

Query: 310 TMATYKPGYPIALVSLGRREGVAHFPFLTISGRIPGWIKSRDLFVGKTRKQLGL 363
            MATYKPG   ALVSLGRR+GVA FPF+TISG +PG IKSRDLFVGKTRK+ GL
Sbjct: 310 KMATYKPGSVTALVSLGRRDGVAQFPFVTISGIVPGMIKSRDLFVGKTRKRRGL 363

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059230|ref|XP_002299779.1| predicted protein [Populus trichocarpa] gi|222847037|gb|EEE84584.1| predicted protein [Populus trichocarpa]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 227/355 (63%), Positives = 277/355 (78%), Gaps = 4/355 (1%)

Query: 15  EKKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHG 74
           EK+++VVIGGG+ GSLLA  +Q  ADV  ID KEYFEITWA+LR +VEPSF  RSVINH 
Sbjct: 7   EKRRLVVIGGGIAGSLLAKSLQFHADVTFIDPKEYFEITWANLRTMVEPSFGERSVINHR 66

Query: 75  DYLSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQYEKDFE 134
           DY +N +IV STA+ IT+TEV+TA   +  YDY+V+ATGH + VPK+R ERL +Y+ + E
Sbjct: 67  DYYTNGRIVTSTAIGITETEVLTADDFSIPYDYLVIATGHRDPVPKTRMERLKEYQAENE 126

Query: 135 KVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTS 194
           K+KSA SVLIVGGGPTGVELAGEI+VDFP+K V LVH G +LLEF+G +AS   L WLTS
Sbjct: 127 KIKSAQSVLIVGGGPTGVELAGEISVDFPEKHVTLVHSGSRLLEFIGPKASDKTLQWLTS 186

Query: 195 KKVEVILNQSVTLNTISDG----LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSL 250
           K+V+V L Q V LN+++D     +  T++GE+I  DCHF+CTGK + S WL  TIL  +L
Sbjct: 187 KRVDVKLEQRVDLNSVTDSNGSKIYHTTAGESIRADCHFLCTGKPLGSGWLEGTILNSNL 246

Query: 251 DGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGT 310
           D RGRLMVDE LRV+G KN+FAIGDITD+PEIKQGYLAQKHALV A NLK LM G  +  
Sbjct: 247 DSRGRLMVDEYLRVKGRKNIFAIGDITDVPEIKQGYLAQKHALVAAANLKLLMSGGKERK 306

Query: 311 MATYKPGYPIALVSLGRREGVAHFPFLTISGRIPGWIKSRDLFVGKTRKQLGLKP 365
           M++YKPG   A+VSLGRR+ VA FP+ T+ G +PG IKSRDLFVGKTRKQ GL+P
Sbjct: 307 MSSYKPGSTTAIVSLGRRDAVAQFPYTTLIGIVPGMIKSRDLFVGKTRKQRGLQP 361

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542786|ref|XP_003539846.1| PREDICTED: apoptosis-inducing factor homolog A-like [Glycine max]

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 222/356 (62%), Positives = 282/356 (79%), Gaps = 2/356 (0%)

Query: 14  VEKKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINH 73
           ++  +VV++GGGV GS++A  +Q  A V L+D KEYFEITWASLR++VEPSFA RSVINH
Sbjct: 3   IDGNRVVILGGGVAGSVVAKSLQFHAHVTLVDPKEYFEITWASLRSMVEPSFAERSVINH 62

Query: 74  GDYLSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQYEKDF 133
            DY +N  IV S AV++T+TEV+TA G    YDY+V+ATGH + +PKSR ERL+Q+++D 
Sbjct: 63  RDYFTNGDIVTSNAVNVTETEVLTADGHRIGYDYLVIATGHADPLPKSRRERLNQFKEDN 122

Query: 134 EKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLT 193
           +K+KSA S+LI+GGGPTGVELAGEIAVDFPDKK+ LVH+G +LLEF+G++A    L+WL 
Sbjct: 123 QKIKSAQSILIIGGGPTGVELAGEIAVDFPDKKLTLVHKGARLLEFIGAKAGDKTLNWLK 182

Query: 194 SKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLD 251
           SK V V L QSV LN   DG  + +TS+GETI+ DCHF+C GK +AS+WL+ET+LK+ LD
Sbjct: 183 SKNVVVKLEQSVDLNAFKDGQKIYQTSNGETIEADCHFLCIGKPLASAWLKETVLKNDLD 242

Query: 252 GRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTM 311
           G+GR+ VDE LRV+G  N+FAIGDITDIPEIKQG+LAQ+ A V  KNLK ++ G  +  M
Sbjct: 243 GQGRIKVDEKLRVKGKDNIFAIGDITDIPEIKQGFLAQQQAEVVVKNLKVILEGGRECRM 302

Query: 312 ATYKPGYPIALVSLGRREGVAHFPFLTISGRIPGWIKSRDLFVGKTRKQLGLKPTV 367
            TYKP   IA+VSLGR++ VA  PFLTI GRIPG+IKS DLFVGKTRKQ+GL P +
Sbjct: 303 ETYKPHSAIAIVSLGRKDAVAQLPFLTIGGRIPGFIKSGDLFVGKTRKQMGLNPDI 358

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	368
TAIR|locus:2081373	367	AT3G44190 [Arabidopsis thalian	0.921	0.923	0.642	7.9e-117
TAIR|locus:504956456	365	AT5G22140 "AT5G22140" [Arabido	0.915	0.923	0.619	5.3e-111
UNIPROTKB|Q9BRQ8	373	AIFM2 "Apoptosis-inducing fact	0.866	0.855	0.302	1.1e-34
UNIPROTKB|A5PJM4	373	AIFM2 "Apoptosis-inducing fact	0.855	0.844	0.299	4.1e-33
UNIPROTKB|E1BR24	373	AIFM2 "Uncharacterized protein	0.875	0.863	0.298	6.7e-33
UNIPROTKB|E2RQW8	373	AIFM2 "Uncharacterized protein	0.858	0.847	0.288	1.4e-32
RGD|1304964	373	Aifm2 "apoptosis-inducing fact	0.858	0.847	0.294	1.4e-32
MGI|MGI:1918611	373	Aifm2 "apoptosis-inducing fact	0.858	0.847	0.294	3.7e-32
DICTYBASE|DDB_G0286241	397	aifD "putative apoptosis induc	0.855	0.793	0.268	1.3e-31
UNIPROTKB|F1SUD4	373	AIFM2 "Uncharacterized protein	0.869	0.857	0.280	6.9e-31

TAIR|locus:2081373 AT3G44190 [Arabidopsis thaliana (taxid:3702)]

 Score = 1151 (410.2 bits), Expect = 7.9e-117, P = 7.9e-117
 Identities = 219/341 (64%), Positives = 275/341 (80%)

Query:    29 SLLAYHIQSFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVSTAV 88
             SL +  +Q  +D+ LID KEYFEI WASLR++VEP+FA RSVINH  YL N ++V S AV
Sbjct:    24 SLASKFLQFDSDLTLIDPKEYFEIIWASLRSMVEPAFAERSVINHKKYLQNGRVVTSPAV 83

Query:    89 SITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQYEKDFEKVKSANSVLIVGGG 148
             +ITDT+V+TA G  F YDY+V+ATGH + +PK+R E+LSQY+ + EK+KS+ S+LIVGGG
Sbjct:    84 NITDTDVLTADGLVFGYDYLVIATGHNDVLPKTRQEKLSQYQTEHEKIKSSESILIVGGG 143

Query:   149 PTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLN 208
             P+GVELA EIAVDFP+KKV +VH GP+LLEFVG +A+  ALDW+ SK+VEVILNQ V L+
Sbjct:   144 PSGVELAAEIAVDFPEKKVTIVHNGPRLLEFVGQKAADKALDWMKSKRVEVILNQRVDLS 203

Query:   209 TISDG--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRG 266
             + SDG     TS GETI  DCHF+CTGK ++S WL+ T+LKD+LDG+GRLMVDE LRV+G
Sbjct:   204 SASDGSKTYRTSGGETIHADCHFLCTGKPLSSEWLKGTVLKDNLDGKGRLMVDEYLRVKG 263

Query:   267 FKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYKPGYPIALVSLG 326
              KNVFAIGDITD+PE+KQGY+A+KHA V  KN+K LM G N+  M+TYKPG  IA++SLG
Sbjct:   264 RKNVFAIGDITDVPEMKQGYIAEKHASVATKNIKLLMSGGNEKKMSTYKPGPDIAIISLG 323

Query:   327 RREGVAHFPFLTISGRIPGWIKSRDLFVGKTRKQLGLKPTV 367
             R++ VA FPF+T+SG IPG IKS+DLFVGKTRK  GL P +
Sbjct:   324 RKDSVAQFPFMTVSGCIPGLIKSKDLFVGKTRKARGLDPNL 364

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

TAIR|locus:504956456 AT5G22140 "AT5G22140" [Arabidopsis thaliana (taxid:3702)]

 Score = 1096 (390.9 bits), Expect = 5.3e-111, P = 5.3e-111
 Identities = 210/339 (61%), Positives = 265/339 (78%)

Query:    29 SLLAYHIQSFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVSTAV 88
             SL A  +Q  A+V LID KEYFEITWASLR++VEP FA R+VINH  YL   ++V S A+
Sbjct:    24 SLAAKLLQFDAEVTLIDPKEYFEITWASLRSMVEPKFAERTVINHKSYLKQGRLVTSPAI 83

Query:    89 SITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQYEKDFEKVKSANSVLIVGGG 148
             +IT+++V+T  G    YDY+V+ATGH +  PK+R E+LS Y+ ++EK+KS+ SVLIVGGG
Sbjct:    84 NITESDVMTEDGSVIGYDYLVIATGHNDLFPKTRQEKLSHYQSEYEKIKSSGSVLIVGGG 143

Query:   149 PTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLN 208
             P+GVELA EIAVDFP+KKV LVH+GP+LLEFVG +A+  A DWL SKKVEVILNQSV L+
Sbjct:   144 PSGVELAAEIAVDFPEKKVTLVHKGPRLLEFVGQKAADKASDWLESKKVEVILNQSVDLS 203

Query:   209 TISDG--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRG 266
             + SDG  +  TS GETI  D HF+C GK ++S WL  T+LKDSLDG+GR+MVDE LR+RG
Sbjct:   204 SASDGNKIYRTSGGETIHADIHFLCVGKPLSSQWLNGTVLKDSLDGKGRVMVDEYLRIRG 263

Query:   267 FKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYKPGYPIALVSLG 326
               NVFA+GDIT+IPE+KQGY+A+ HA V  KN+K +M G  K  M+TYKPG  +A+VSLG
Sbjct:   264 RSNVFAVGDITNIPEMKQGYIAETHANVVVKNIKVMMSGGKKKKMSTYKPGPELAIVSLG 323

Query:   327 RREGVAHFPFLTISGRIPGWIKSRDLFVGKTRKQLGLKP 365
             R++ VA FPF+T+ G +PG IKS+DLFVGKTRK  GL P
Sbjct:   324 RKDSVAQFPFVTVVGCLPGLIKSKDLFVGKTRKARGLNP 362

GO:0009055 "electron carrier activity" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

UNIPROTKB|Q9BRQ8 AIFM2 "Apoptosis-inducing factor 2" [Homo sapiens (taxid:9606)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 103/340 (30%), Positives = 172/340 (50%)

Query:    42 VLIDEKEYFEITWASLRAVVEPSFAVRSVINHG-DYLSNVKIVVSTAVSITDTEVVTAGG 100
             +L+D K+ F    A+LRA VE  FA ++ I++   +  N +  +   + + +  V+  GG
Sbjct:    38 MLVDMKDSFHHNVAALRASVETGFAKKTFISYSVTFKDNFRQGLVVGIDLKNQMVLLQGG 97

Query:   101 QTFVYDYVVVATGHVESVPKSRTERLSQ------YEKDFEKVKSANSVLIVGGGPTGVEL 154
             +   + ++++ATG     P    E  SQ      YE    +V+ +  +++VGGG  GVE+
Sbjct:    98 EALPFSHLILATGSTGPFPGKFNEVSSQQAAIQAYEDMVRQVQRSRFIVVVGGGSAGVEM 157

Query:   155 AGEIAVDFPDKKVILVHRGPKLL--EFVGSRASQIALDWLTSKKVEVILNQSVT------ 206
             A EI  ++P+K+V L+H    L   E + S   ++  + L  K V+++L++ V+      
Sbjct:   158 AAEIKTEYPEKEVTLIHSQVALADKELLPSVRQEVK-EILLRKGVQLLLSERVSNLEELP 216

Query:   207 LNTISDGL-IETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVR 265
             LN   + + ++T  G  + T+   +CTG  + SS  R+   +  L   G L V+E+L+V 
Sbjct:   217 LNEYREYIKVQTDKGTEVATNLVILCTGIKINSSAYRKAF-ESRLASSGALRVNEHLQVE 275

Query:   266 GFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYKPGYPIALVSL 325
             G  NV+AIGD  D+   K  YLA  HA +   N+   +  R    +  YKPG    L+S+
Sbjct:   276 GHSNVYAIGDCADVRTPKMAYLAGLHANIAVANIVNSVKQR---PLQAYKPGALTFLLSM 332

Query:   326 GRREGVAHFPFLTISGRIPGWIKSRDLFVGKTRKQLGLKP 365
             GR +GV       +   +    KSRDLFV  + K +   P
Sbjct:   333 GRNDGVGQISGFYVGRLMVRLTKSRDLFVSTSWKTMRQSP 372

GO:0016021 "integral to membrane" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0008637 "apoptotic mitochondrial changes" evidence=NAS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA

GO:0003677 "DNA binding" evidence=IDA

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IDA

GO:0006917 "induction of apoptosis" evidence=IDA;IMP

GO:0030261 "chromosome condensation" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|A5PJM4 AIFM2 "Apoptosis-inducing factor 2" [Bos taurus (taxid:9913)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 101/337 (29%), Positives = 168/337 (49%)

Query:    42 VLIDEKEYFEITWASLRAVVEPSFAVRSVINHG-DYLSNVKIVVSTAVSITDTEVVTAGG 100
             VL+D K+ F    A+LRA VE  FA ++ I++   +  N +  +   + + +  V+   G
Sbjct:    38 VLVDMKDSFHHNVAALRASVESGFAKKTFISYSVTFKENFRQGLVVEIDLKNQTVLLEDG 97

Query:   101 QTFVYDYVVVATGHVESVP------KSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVEL 154
             Q   + ++++ATG     P       S+   +  YE    +V+ + S+++VGGG  GVE+
Sbjct:    98 QALPFSHLILATGSTGLFPGKFNQVSSQQMAIQAYEDMVTQVQRSQSIVVVGGGSAGVEM 157

Query:   155 AGEIAVDFPDKKVILVHRGPKLLEF-VGSRASQIALDWLTSKKVEVILNQSVT------L 207
             A EI  ++P+K+V L+H    L +  +     Q   + L  K V+++L++ V+      +
Sbjct:   158 AAEIKTEYPEKEVTLIHSKMALADTELLPCVRQEVKEILLRKGVQLLLSERVSNLEALPV 217

Query:   208 NTISDGL-IETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRG 266
             N   + + ++T  G  +D +   +C G  + S+  R     D L   G L V+E L+V G
Sbjct:   218 NERRECIKVQTDKGTEVDANLVIVCNGIKINSAAYRSAF-GDRLASNGALRVNEYLQVEG 276

Query:   267 FKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYKPGYPIALVSLG 326
             + +++AIGD  D+ E K  Y A  HA V   N+   M  R    + TYKPG    L+++G
Sbjct:   277 YSHIYAIGDCADVREPKMAYHASLHANVAVANIVNSMKQR---PLKTYKPGSLTFLLAMG 333

Query:   327 RREGVAHFPFLTISGRIPGWIKSRDLFVG---KTRKQ 360
             R +GV       +   +    KSRDL V    KT KQ
Sbjct:   334 RNDGVGQISGFYVGRLMVRLAKSRDLLVSTSWKTMKQ 370

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

UNIPROTKB|E1BR24 AIFM2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 105/352 (29%), Positives = 176/352 (50%)

Query:    32 AYHIQSFA-DVVLIDEKEYFEITWASLRAVVEPSFAVRSVINH----GDYLSNVKIVVST 86
             A  ++S+A   VL+D ++ F    A+LRA VE  FA ++ I++    GD     K+V   
Sbjct:    26 ASQLKSWAVPFVLVDMRDAFHHNVAALRASVESGFARKTFISYSVTFGDSFRQGKVV--- 82

Query:    87 AVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTE------RLSQYEKDFEKVKSAN 140
              +     +V+ + G+   Y ++++ATG     P    +       +  YE   ++++ + 
Sbjct:    83 GIDPERQQVLLSDGEELHYSHLILATGSDGPFPGKFNKVIDMESAIQTYEDMVKEIEKSE 142

Query:   141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHR-----GPKLLEFVGSRASQIALD----W 191
              +L+VGGG  GVE+A EI  ++P K+V L+H        +LL+ V     +I L      
Sbjct:   143 RILVVGGGAAGVEMAAEIKTEYPAKEVTLIHSKIALADVELLQSVRQEVKEILLRKGVRL 202

Query:   192 LTSKKVEVILNQSVTLNTIS-DGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSL 250
             L S+KV  + N  +T N    D ++ T  G  +  D   +CTG  + SS    T   D L
Sbjct:   203 LLSEKVSNVEN--LTTNQFQKDMVVRTEKGTEVVVDMVVLCTGIKINSS-AYATAFGDKL 259

Query:   251 DGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGT 310
                G L V+++L++ G+ N++AIGD  ++ E K  Y A+ HA +   N+   +  +    
Sbjct:   260 ASNGALNVNKHLQLEGYDNIYAIGDCANLKEPKMAYHAELHANIVVSNIINSLTHK---P 316

Query:   311 MATYKPGYPIALVSLGRREGVAHFPFLTISGRIPGWIKSRDLFVGKTRKQLG 362
             + TY+PG    L+S+G+ +GV       +   +    KSRDLFV K+ K +G
Sbjct:   317 LKTYQPGSLTFLLSMGKNDGVGQVKGYYVGHLLVTIAKSRDLFVSKSWKTMG 368

GO:0003677 "DNA binding" evidence=IEA

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

UNIPROTKB|E2RQW8 AIFM2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 99/343 (28%), Positives = 169/343 (49%)

Query:    42 VLIDEKEYFEITWASLRAVVEPSFAVRSVINHG-DYLSNVKIVVSTAVSITDTEVVTAGG 100
             +L+D K+ F    A+LRA VE  FA ++ I++   +  N +  +   + + +  V+   G
Sbjct:    38 MLVDMKDSFHHNVAALRASVESGFAKKTFISYSVTFKENFRQGLVVEIDVQNQMVLLEDG 97

Query:   101 QTFVYDYVVVATGHVESVPKSRTE------RLSQYEKDFEKVKSANSVLIVGGGPTGVEL 154
             +   + ++++ATG     P    +       +  YE   ++V+ + SV++VGGG  GVE+
Sbjct:    98 EALPFSHLILATGSTGLFPGKFNQVSSWELAIQAYEDMVKQVQRSQSVVVVGGGSAGVEM 157

Query:   155 AGEIAVDFPDKKVILVHR-----GPKLLEFVGSRASQIALDWLTSKKVEVILNQSVT--- 206
             A E+  +FP+K+V L+H        +LL  V   A +I L     K V+++L++ V+   
Sbjct:   158 AAEVKTEFPEKEVTLIHSQVALADKELLPCVRQEAKEILLQ----KGVQLLLSERVSNLE 213

Query:   207 ---LNTISDGL-IETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENL 262
                LN   + + + T  G  + T+   +C G  + SS    +     L   G L V+E L
Sbjct:   214 DLPLNEYRERIQVHTDKGTEVATNLVIVCNGIKVNSS-AYHSAFDGHLASNGALRVNEYL 272

Query:   263 RVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYKPGYPIAL 322
             +V G+ +++AIGD  D+ E K  Y A  HA V   N+   +  R +  +  YKPG    L
Sbjct:   273 QVEGYSHIYAIGDCADVKEPKMAYHAGLHASVAVANI---VNSRKQRPLKAYKPGALTFL 329

Query:   323 VSLGRREGVAHFPFLTISGRIPGWIKSRDLFVGKTRKQLGLKP 365
             +++GR +GV       +   +    KSRDLFV  + K +   P
Sbjct:   330 LAMGRNDGVGQISGFYVGRLMVRLAKSRDLFVSSSWKTMRQSP 372

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

RGD|1304964 Aifm2 "apoptosis-inducing factor, mitochondrion-associated 2" [Rattus norvegicus (taxid:10116)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 101/343 (29%), Positives = 168/343 (48%)

Query:    42 VLIDEKEYFEITWASLRAVVEPSFAVRSVINHG-DYLSNVKIVVSTAVSITDTEVVTAGG 100
             +L+D K+ F    A+LRA VE  FA ++ I++   +  N +      + + +  V+  GG
Sbjct:    38 MLVDMKDSFHHNVAALRASVESGFAKKTFISYSVTFKDNFRQGKVIGIDLKNRMVLLEGG 97

Query:   101 QTFVYDYVVVATGHVESVPKSRTE------RLSQYEKDFEKVKSANSVLIVGGGPTGVEL 154
             +   + ++++ATG     P    E       +  YE   ++++ +  +++VGGG  GVE+
Sbjct:    98 EALPFSHLILATGSTGPFPGKFNEVSCQQAAIQAYEDMVKQIQRSQFIVVVGGGSAGVEM 157

Query:   155 AGEIAVDFPDKKVILVH-RGP----KLLEFVGSRASQIALDWLTSKKVEVILNQSVT--- 206
             A EI  ++P+K+V L+H R P    +LL  V     +I L     K V+++L++ V+   
Sbjct:   158 AAEIKTEYPEKEVTLIHSRVPLADKELLPCVRQEVKEILL----RKGVQLLLSERVSNLE 213

Query:   207 ---LNTISDGL-IETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENL 262
                 N   + + +ET  G  + T+   +C G  + SS  R    +  L   G L V+E L
Sbjct:   214 ELPRNEYREYIKVETDKGTEVATNMVIVCNGIKINSSAYRSAF-ESRLASNGALKVNEFL 272

Query:   263 RVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYKPGYPIAL 322
             +V G+ N++AIGD  DI E K  Y A  HA +   N+   M  R    +  YKPG    L
Sbjct:   273 QVEGYSNIYAIGDCADIKEPKMAYHAGLHANIAVANIVNSMKQR---PLKAYKPGALTFL 329

Query:   323 VSLGRREGVAHFPFLTISGRIPGWIKSRDLFVGKTRKQLGLKP 365
             +S+GR +GV       +   +    KSRDL +  + K +   P
Sbjct:   330 LSMGRNDGVGQISGFYVGRLMVRLAKSRDLLISTSWKTMRQSP 372

GO:0003677 "DNA binding" evidence=IEA;ISO

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005741 "mitochondrial outer membrane" evidence=IEA;ISO

GO:0005811 "lipid particle" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0006917 "induction of apoptosis" evidence=IEA;ISO

GO:0030261 "chromosome condensation" evidence=IEA;ISO

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA;ISO

MGI|MGI:1918611 Aifm2 "apoptosis-inducing factor, mitochondrion-associated 2" [Mus musculus (taxid:10090)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 101/343 (29%), Positives = 167/343 (48%)

Query:    42 VLIDEKEYFEITWASLRAVVEPSFAVRSVINHG-DYLSNVKIVVSTAVSITDTEVVTAGG 100
             +L+D K+ F    A+LRA VE  FA ++ I++   +  N +      + + +  V+  GG
Sbjct:    38 MLVDMKDSFHHNVAALRASVESGFAKKTFISYSATFKDNFRQGKVIGIDLKNRMVLLQGG 97

Query:   101 QTFVYDYVVVATGHVESVPKSRTE------RLSQYEKDFEKVKSANSVLIVGGGPTGVEL 154
             +   + ++++ATG     P    E       +  YE   ++++ +  +++VGGG  GVE+
Sbjct:    98 EALPFSHLILATGSTGPFPGKFNEVSCQQAAIQAYEDMVKQIQRSQFIVVVGGGSAGVEM 157

Query:   155 AGEIAVDFPDKKVILVH-RGP----KLLEFVGSRASQIALDWLTSKKVEVILNQSVT--- 206
             A EI  ++P+K+V L+H R P    +LL  V     +I L     K V+++L++ V+   
Sbjct:   158 AAEIKTEYPEKEVTLIHSRVPLADKELLPCVRQEVKEILL----RKGVQLLLSERVSNLE 213

Query:   207 ---LNTISDGL-IETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENL 262
                 N   + + +ET  G  + T+   +C G  + SS  R    +  L   G L V+E L
Sbjct:   214 ELPRNEYREYIKVETDKGTEVATNMVIVCNGIKINSSAYRSAF-ESRLASNGALKVNEFL 272

Query:   263 RVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYKPGYPIAL 322
             +V G+ N++AIGD  D  E K  Y A  HA V   N+   M  R    +  YKPG    L
Sbjct:   273 QVEGYSNIYAIGDCADTKEPKMAYHAGLHANVAVANIVNSMKQR---PLKAYKPGALTFL 329

Query:   323 VSLGRREGVAHFPFLTISGRIPGWIKSRDLFVGKTRKQLGLKP 365
             +S+GR +GV       +   +    KSRDL +  + K +   P
Sbjct:   330 LSMGRNDGVGQISGFYVGRLMVRLAKSRDLLISTSWKTMRQSP 372

GO:0003677 "DNA binding" evidence=ISO

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005741 "mitochondrial outer membrane" evidence=ISO

GO:0005811 "lipid particle" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0006917 "induction of apoptosis" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0030261 "chromosome condensation" evidence=ISO

GO:0050660 "flavin adenine dinucleotide binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

DICTYBASE|DDB_G0286241 aifD "putative apoptosis inducing factor" [Dictyostelium discoideum (taxid:44689)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 88/328 (26%), Positives = 164/328 (50%)

Query:    29 SLLAYHIQSFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVSTAV 88
             S++A  +++   V LID K++FE T + LR +VEP    +  I H  YL +  ++    +
Sbjct:    64 SIVAQKLENDYQVTLIDTKDFFEFTPSILRTIVEPQHVKKIQILHSHYLKHTNVIQKEVL 123

Query:    89 SITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTE-----RLSQYEKDFEKVKSANSVL 143
              +   EV+    ++  +DY+V+ +G   + P   +      R +   +++  ++    +L
Sbjct:   124 GVQSREVIL-DDRSVEFDYLVINSGSSYNSPFKESSVVSSARANTLRENYYHIRKLKRIL 182

Query:   144 IVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQ 203
             I+GGG  GVELA EI   F  K+V +VH   KL+     +  +   ++L  + V++I N+
Sbjct:   183 IIGGGIVGVELAAEIVDHFKGKEVTIVHSQSKLMNRFPKKTIRYTEEFLQKRGVKLIYNE 242

Query:   204 SVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLR 263
              V  +      I T  G  I  +  F+CTG A  S++++ +   D++   G +  ++ L+
Sbjct:   243 RVVAHR-GQTFI-TDQGSEIIAEQAFLCTGIAPNSNFIKNSY-PDAISENGYIKANDQLQ 299

Query:   264 VRG---FKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYKPGYPI 320
             + G   ++N+F  GD+  + E K    A+  A +   N+   M  R +  M +YKP    
Sbjct:   300 MAGTTFYRNIFVSGDVLHVREEKLAQTAECTASIVVNNINA-MESRCEHKMQSYKPFAKP 358

Query:   321 ALVSLGRREGVAHFPFLTISGRIPGWIK 348
              L+SLG+   +  +   +I+G +P  +K
Sbjct:   359 VLISLGKYSAIFVYKDYSITGFLPALLK 386

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1SUD4 AIFM2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 95/339 (28%), Positives = 168/339 (49%)

Query:    42 VLIDEKEYFEITWASLRAVVEPSFAVRSVINHG-DYLSNVKIVVSTAVSITDTEVVTAGG 100
             +L+D K+ F    A+LRA VE  FA ++ I++   +  N +  +   + + +  V+   G
Sbjct:    38 LLVDMKDSFHHNVAALRASVERGFAKKTFISYSVTFKENFRQGLVVEIDLKNQTVLLEDG 97

Query:   101 QTFVYDYVVVATGHVESVP------KSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVEL 154
             +   + ++++ATG     P       S+   +  YE    +V+ + ++++VGGG  GVE+
Sbjct:    98 EALSFSHLILATGSTGLFPGKFNKVSSQQMAIQAYEDMVTQVQRSQAIVVVGGGSAGVEM 157

Query:   155 AGEIAVDFPDKKVILVHRGPKLLEF-VGSRASQIALDWLTSKKVEVILNQSVT------L 207
             A EI  ++P+K+V L+H    L +  +     Q   + L  K V+++L++ V+      L
Sbjct:   158 AAEIKTEYPEKEVTLIHSQMALADTELLPCVRQEVKEILLRKGVQLLLSERVSNLEGLPL 217

Query:   208 NTISDGL-IETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRG 266
             N   + + ++T  G  +  +   +C G  + +   R   L D L G G L V+E+L+V G
Sbjct:   218 NEYQECIKVQTDKGTEVAANLVIVCNGIRINTLAYRSA-LGDRLAGSGALRVNEHLQVEG 276

Query:   267 FKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYKPGYPIALVSLG 326
               +++AIGD  ++ E K  Y A  HA V   N+   +  R    + TYKPG    L+++G
Sbjct:   277 CSHIYAIGDCANVREPKMAYHAGLHASVAVANIVNSVKQR---PLKTYKPGSLTFLLAMG 333

Query:   327 RREGVAHFPFLTISGRIPGWIKSRDLFVGKTRKQLGLKP 365
             R +GV       +   +    KSRDL V  + K +   P
Sbjct:   334 RNDGVGQISGFYVGRLMVRLAKSRDLLVSTSWKTMRQSP 372

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54NS9	AIFA_DICDI	1, ., -, ., -, ., -	0.3151	0.9592	0.8651	yes	no
B4F6I3	AIFM2_XENTR	1, ., -, ., -, ., -	0.3115	0.8614	0.8475	yes	no
Q9BRQ8	AIFM2_HUMAN	1, ., -, ., -, ., -	0.3029	0.8668	0.8552	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00013793001 SubName- Full=Chromosome undetermined scaffold_100, whole genome shotgun sequence; (365 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	368
COG1252	405	COG1252, Ndh, NADH dehydrogenase, FAD-containing s	4e-49
TIGR03169	364	TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu	4e-29
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	6e-22
PTZ00318	424	PTZ00318, PTZ00318, NADH dehydrogenase-like protei	8e-18
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	8e-18
PRK04965	377	PRK04965, PRK04965, NADH:flavorubredoxin oxidoredu	3e-16
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	2e-15
COG0492	305	COG0492, TrxB, Thioredoxin reductase [Posttranslat	8e-13
TIGR03385	427	TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase	1e-09
TIGR01350	460	TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog	2e-09
TIGR01423	486	TIGR01423, trypano_reduc, trypanothione-disulfide	7e-09
pfam00070	82	pfam00070, Pyr_redox, Pyridine nucleotide-disulphi	8e-09
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	2e-08
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	1e-07
TIGR02053	463	TIGR02053, MerA, mercuric reductase	3e-07
TIGR03452	452	TIGR03452, mycothione_red, mycothione reductase	3e-07
TIGR01292	299	TIGR01292, TRX_reduct, thioredoxin-disulfide reduc	8e-07
PRK05249	461	PRK05249, PRK05249, soluble pyridine nucleotide tr	2e-06
PRK07846	451	PRK07846, PRK07846, mycothione reductase; Reviewed	6e-06
COG2072	443	COG2072, TrkA, Predicted flavoprotein involved in	8e-06
PRK09754	396	PRK09754, PRK09754, phenylpropionate dioxygenase f	1e-05
PRK15317	517	PRK15317, PRK15317, alkyl hydroperoxide reductase	5e-05
TIGR03140	515	TIGR03140, AhpF, alkyl hydroperoxide reductase sub	1e-04
pfam13454	153	pfam13454, NAD_binding_9, FAD-NAD(P)-binding	1e-04
TIGR01424	446	TIGR01424, gluta_reduc_2, glutathione-disulfide re	1e-04
PRK06116	450	PRK06116, PRK06116, glutathione reductase; Validat	2e-04
pfam13434	335	pfam13434, K_oxygenase, L-lysine 6-monooxygenase (	2e-04
PRK05976	472	PRK05976, PRK05976, dihydrolipoamide dehydrogenase	2e-04
PRK06834	488	PRK06834, PRK06834, hypothetical protein; Provisio	2e-04
PRK09564	444	PRK09564, PRK09564, coenzyme A disulfide reductase	3e-04
TIGR01421	450	TIGR01421, gluta_reduc_1, glutathione-disulfide re	3e-04
PRK13512	438	PRK13512, PRK13512, coenzyme A disulfide reductase	5e-04
PTZ00058	561	PTZ00058, PTZ00058, glutathione reductase; Provisi	5e-04
PRK07818	466	PRK07818, PRK07818, dihydrolipoamide dehydrogenase	9e-04
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	0.001
PRK08010	441	PRK08010, PRK08010, pyridine nucleotide-disulfide	0.001
COG1251	793	COG1251, NirB, NAD(P)H-nitrite reductase [Energy p	0.001
COG4529	474	COG4529, COG4529, Uncharacterized protein conserve	0.002
PRK07251	438	PRK07251, PRK07251, pyridine nucleotide-disulfide	0.002
TIGR04046	400	TIGR04046, MSMEG_0569_nitr, flavin-dependent oxido	0.003
TIGR02374	785	TIGR02374, nitri_red_nirB, nitrite reductase [NAD(	0.003
PRK12771	564	PRK12771, PRK12771, putative glutamate synthase (N	0.003
COG3634	520	COG3634, AhpF, Alkyl hydroperoxide reductase, larg	0.003
TIGR03315	1012	TIGR03315, Se_ygfK, putative selenate reductase, Y	0.003
PRK14727	479	PRK14727, PRK14727, putative mercuric reductase; P	0.004
PRK06370	463	PRK06370, PRK06370, mercuric reductase; Validated	0.004

>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

 Score =  169 bits (431), Expect = 4e-49
 Identities = 102/382 (26%), Positives = 160/382 (41%), Gaps = 58/382 (15%)

Query: 16  KKKVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYF-EITWA-SLRA-VVEPSFAVRS 69
           KK++V++GGG GG   A  +       ++ L+D ++Y         +    +  S     
Sbjct: 3   KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIP 62

Query: 70  VINHGDYLSNVKIVVSTAVSITDTE---VVTAGGQTFVYDYVVVATGHV----------- 115
           +        NV+ V      I D +   V  A      YDY+VVA G             
Sbjct: 63  LRALLRKSGNVQFVQGEVTDI-DRDAKKVTLADLGEISYDYLVVALGSETNYFGIPGAAE 121

Query: 116 -----ESVPKSRTER---LSQYEK--DFEKVKSANSVLIVGGGPTGVELAGEIA------ 159
                +++  +   R   L  +EK    E  ++  +++IVGGGPTGVELAGE+A      
Sbjct: 122 YAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRL 181

Query: 160 -----VDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGL 214
                VD  + +VILV  GP++L     + S+ A   L    VEV+L   VT   ++   
Sbjct: 182 LKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVT--EVTPDG 239

Query: 215 IETSSGE-TIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAI 273
           +    GE  I  D      G   AS  L++    ++ D RGRL+V+  L+V G  ++FA 
Sbjct: 240 VTLKDGEEEIPADTVVWAAGVR-ASPLLKDLSGLET-DRRGRLVVNPTLQVPGHPDIFAA 297

Query: 274 GDITDIPEIK------QGYLAQKHALVTAKNLKKLMMGRNKGTMATYKPGYPIALVSLGR 327
           GD   + + +      Q    Q      AKN+K  + G+    +  +K      L SLG 
Sbjct: 298 GDCAAVIDPRPVPPTAQAAHQQ--GEYAAKNIKARLKGK---PLKPFKYKDKGTLASLGD 352

Query: 328 REGVAHFPFLTISGRIPGWIKS 349
              VA    + + G +   +K 
Sbjct: 353 FSAVADLGGVKLKGFLAWLLKR 374

Length = 405

>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein

 Score =  115 bits (290), Expect = 4e-29
 Identities = 78/293 (26%), Positives = 119/293 (40%), Gaps = 40/293 (13%)

Query: 80  VKIVVSTAVSITDTE---VVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQY------- 129
            + V++ A  I D +   V+ A      YD + +  G     P S  E  +         
Sbjct: 69  ARFVIAEATGI-DPDRRKVLLANRPPLSYDVLSLDVGST--TPLSGVEGAADLAVPVKPI 125

Query: 130 -------EKDFEKVK---SANSVLIVGGGPTGVELAGEIAVDFPDKKV---ILVHRGPKL 176
                  E   E          + +VGGG  GVE+A  +    P + +   + +  G  L
Sbjct: 126 ENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASL 185

Query: 177 LEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAM 236
           L    ++  ++ L  L  + +EV     VT     DG +  + G T+  D     TG A 
Sbjct: 186 LPGFPAKVRRLVLRLLARRGIEVHEGAPVTR--GPDGALILADGRTLPADAILWATG-AR 242

Query: 237 ASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGD---ITDIPEIKQGYLAQKHAL 293
           A  WL E+ L   LD  G L VD  L+     +VFA GD   ITD P  K G  A + A 
Sbjct: 243 APPWLAESGL--PLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAP 300

Query: 294 VTAKNLKKLMMGRNKGTMATYKPG--YPIALVSLGRREGVAHFPFLTISGRIP 344
           + A NL+  + G     +  ++P   Y + L++ G R  VA + ++   GR  
Sbjct: 301 ILAANLRASLRG---QPLRPFRPQRDY-LQLLNTGDRRAVASWGWIIGPGRWL 349

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 94.0 bits (234), Expect = 6e-22
 Identities = 63/287 (21%), Positives = 110/287 (38%), Gaps = 29/287 (10%)

Query: 18  KVVVIGGGVGGSLLAYHI-QSFADVVLIDEKEYFE-----ITWASLRAVVEPSFAVRSVI 71
            VV+IGGG  G   A  + +    V LI+ +         +    L  V E       + 
Sbjct: 1   DVVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNRGCLPKKLLLEVAEGLELAIGLA 60

Query: 72  NHGDYLSNVKIVVSTAVSITD--------TEVVTAGGQTFVYDYVVVATG------HVES 117
              +      + V     + D               G+   YD +++ATG       +  
Sbjct: 61  LPEEVYKEFGVEVLLGTEVVDIDRGEKTVVLKDVETGREITYDKLIIATGARPRIPGIPG 120

Query: 118 VPKSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL 177
           V  +    +   ++  E ++    V++VGGG  G+ELA  +A     K+V +V R  +LL
Sbjct: 121 VEVATLRGVIDSDEILELLELPKRVVVVGGGYIGLELAAALA-KL-GKEVTVVERRDRLL 178

Query: 178 EFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG----LIETSSGETIDTDCHFMCTG 233
                  S   L+ L    + V +   V +           ++   GE +D D   +  G
Sbjct: 179 ARADDEISAALLEKLEKLLLGVTVLLVVVVVVKVGDGKVVEVKLGDGEELDADVVLVAIG 238

Query: 234 KAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIP 280
           +   +  L +  ++  LD RG ++VDE LR      ++A GD+ +  
Sbjct: 239 RRPNTELLEQAGVE--LDERGYIVVDEYLRT-SVPGIYAAGDVAEGK 282

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional

 Score = 84.0 bits (208), Expect = 8e-18
 Identities = 86/391 (21%), Positives = 142/391 (36%), Gaps = 78/391 (19%)

Query: 14  VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEIT---------WASLRAVVEP 63
           ++K  VVV+G G  G+    ++     ++ +I  + +   T             R++ EP
Sbjct: 8   LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEP 67

Query: 64  SFAVRSVINHGDYLSNVKIVVSTAVSI-TDTEVVTAGG---------QTFV--YDYVVVA 111
              VR  +         + + +    +  + + V  G           TF   YD +VVA
Sbjct: 68  ---VRPALAKLPN----RYLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVA 120

Query: 112 TG---HVESVP-------------KSRT---------ERLSQYEKDFEKVKSANSVLIVG 146
            G   +  ++P              +R          ER S      E+ K     ++VG
Sbjct: 121 HGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVG 180

Query: 147 GGPTGVELAGEIAVDF-------------PDKKVILVHRGPKLLEFVGSRASQIALDWLT 193
           GGPTGVE A E+A DF              + KV ++  G ++L        +     L 
Sbjct: 181 GGPTGVEFAAELA-DFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLR 239

Query: 194 SKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGR 253
              V++    +V    +   ++    GE I T      TG        ++  LK     R
Sbjct: 240 RLGVDIRTKTAVK-EVLDKEVV-LKDGEVIPTGLVVWSTGVG-PGPLTKQ--LKVDKTSR 294

Query: 254 GRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQ---KHALVTAKNLKKLMMGRNKGT 310
           GR+ VD++LRV+   NVFA+GD     E     LAQ   +  +  AK     +  + K  
Sbjct: 295 GRISVDDHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNEL--KGKPM 352

Query: 311 MATYKPGYPIALVSLGRREGVAHFPFLTISG 341
              +      +L  LG    +       +SG
Sbjct: 353 SKPFVYRSLGSLAYLGNYSAIVQLGAFDLSG 383

Length = 424

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score = 83.8 bits (207), Expect = 8e-18
 Identities = 70/316 (22%), Positives = 115/316 (36%), Gaps = 37/316 (11%)

Query: 19  VVVIGGGVGGSLLAYHIQSF---ADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGD 75
           +V++GGG  G   A  ++     A++ LI  +  +      L   V    A    + +  
Sbjct: 1   IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPP 60

Query: 76  YL---SNVKIVVSTAVSITDTE--VVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQYE 130
                + + +   T V+  D E  VV        YDY+V+ATG      + R   +S +E
Sbjct: 61  RFNRATGIDVRTGTEVTSIDPENKVVLLDDGEIEYDYLVLATG-----ARPRPPPISDWE 115

Query: 131 KDFE------------KVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE 178
                             +    V++VG GP G+E A   A     KKV L+    +L  
Sbjct: 116 GVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKR--GKKVTLIEAADRLGG 173

Query: 179 FVGSRA-SQIALDWLTSKKVEVILNQSVT-----LNTISDGLIETSSGETIDTDCHFMCT 232
            +     ++   + L    VE++L   V       NT+    +    GE I  D   +  
Sbjct: 174 QLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKAD-LVIIG 232

Query: 233 GKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIP---EIKQGYLAQ 289
                +  L    L       G ++VDE        +V+A GD+ +IP     K G +A 
Sbjct: 233 PGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIAL 292

Query: 290 KHALVTAKNLKKLMMG 305
               V A  +    + 
Sbjct: 293 WAIAVAAGRIAAENIA 308

Length = 415

>gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase; Provisional

 Score = 78.8 bits (195), Expect = 3e-16
 Identities = 70/247 (28%), Positives = 104/247 (42%), Gaps = 45/247 (18%)

Query: 79  NVKIVVSTAVSITDTE--VVTAGGQTFVYDYVVVATGHVESVPKSRTER-------LSQY 129
           N+++   T V+  D E  VV + G  + YD +V+ATG    VP               +Y
Sbjct: 72  NLRLFPHTWVTDIDAEAQVVKSQGNQWQYDKLVLATGASAFVPPIPGRELMLTLNSQQEY 131

Query: 130 EKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL-----EFVGSRA 184
                +++ A  VL+VGGG  G ELA ++      K V LV     LL       V SR 
Sbjct: 132 RAAETQLRDAQRVLVVGGGLIGTELAMDLCRA--GKAVTLVDNAASLLASLMPPEVSSRL 189

Query: 185 SQIALDWLTSKKVEVILNQSV-TLNTISDGLIET-SSGETIDTDCHFMCTGKAMASSWLR 242
                  LT   V ++L   +  L     G+  T  SG +I+ D         +A++ LR
Sbjct: 190 QHR----LTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDA-------VIAAAGLR 238

Query: 243 -ETILKDSLD---GRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQG----YL--AQKHA 292
             T L         RG ++VD  L+     +++A+GD  +I     G    +L   Q  A
Sbjct: 239 PNTALARRAGLAVNRG-IVVDSYLQTSA-PDIYALGDCAEI----NGQVLPFLQPIQLSA 292

Query: 293 LVTAKNL 299
           +  AKNL
Sbjct: 293 MALAKNL 299

Length = 377

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 76.9 bits (190), Expect = 2e-15
 Identities = 73/337 (21%), Positives = 119/337 (35%), Gaps = 64/337 (18%)

Query: 15  EKKKVVVIGGGVGGSLLAYHI-QSFADVVLIDEKEYFEIT-------------------- 53
           ++  VVVIG G  G + A    Q    V L+++ E    T                    
Sbjct: 3   KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIE 62

Query: 54  WASLRA------VVEPSFAVRSVINHGDYLSN--------------VKIVVSTAVSITDT 93
            A   A         P      ++   D +                V ++   A    D 
Sbjct: 63  EARHAAKEYGISAEVPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEA-RFVDP 121

Query: 94  ---EVVTAGGQTFVYDYVVVATGHVESVPKSRT---ERLSQYEKDFEKVKSANSVLIVGG 147
              EV     +T   D +++ATG    +P        R+         ++   S++IVGG
Sbjct: 122 HTVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGARILDSSDALFLLELPKSLVIVGG 181

Query: 148 GPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTL 207
           G  G+E A  +       KV +V RG ++L       S+     L    V+++LN  VT 
Sbjct: 182 GYIGLEFAS-VFAAL-GSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTA 239

Query: 208 NTISDGLI----ETSSGETIDTDCHFMCTG-KAMASSW-LRETILKDSLDGRGRLMVDEN 261
               D  +    E   G TI+ D   +  G K       L    ++  LD RG + VD+ 
Sbjct: 240 VEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVE--LDDRGFIKVDDQ 297

Query: 262 LRVRGFKNVFAIGDITDIPE-----IKQGYLAQKHAL 293
           +       ++AIGD+   P      + +G +A ++  
Sbjct: 298 MTTN-VPGIYAIGDVIGGPMLAHVAMAEGRIAAENIA 333

Length = 454

>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

 Score = 68.1 bits (167), Expect = 8e-13
 Identities = 54/244 (22%), Positives = 94/244 (38%), Gaps = 41/244 (16%)

Query: 79  NVKIVVSTAVSITDTE---VVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQYEKDFEK 135
            V+IV      +        V     T+    V++ATG            +   E+   K
Sbjct: 75  GVEIVEDEVEKVELEGGPFKVKTDKGTYEAKAVIIATGAGARKL-----GVPGEEEFEGK 129

Query: 136 VKSA----------NSVLIVGGGPTGVELAGEIAVDFPD--KKVILVHRGPKLLEFVGSR 183
             S             V+++GGG + VE A    +      KKV LVHR  +       R
Sbjct: 130 GVSYCATCDGFFKGKDVVVIGGGDSAVEEA----LYLSKIAKKVTLVHRRDEF------R 179

Query: 184 ASQIALDWLTSK-KVEVILN---QSVTLNTISDGLIETSSGET--IDTDCHFMCTGKAMA 237
           A +I ++ L    K+EV+ N   + +  + +   +++   GE   +  D  F+  G    
Sbjct: 180 AEEILVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPN 239

Query: 238 SSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAK 297
           +  L+   +   LD  G ++VDE +       +FA GD+ D    +Q   A     + A 
Sbjct: 240 TELLKGLGV---LDENGYIVVDEEMETS-VPGIFAAGDVADKN-GRQIATAAGDGAIAAL 294

Query: 298 NLKK 301
           + ++
Sbjct: 295 SAER 298

Length = 305

>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 45/196 (22%), Positives = 88/196 (44%), Gaps = 21/196 (10%)

Query: 99  GGQTF--VYDYVVVATG------HVESVPKSRTERL-----SQYEKDFEKVKSANSVLIV 145
             +T+   YDY++++ G      ++E +       L     +   K +       +V+I+
Sbjct: 84  TNETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVII 143

Query: 146 GGGPTGVELAGEIAVDFPDKKVILVHRGPKLL-EFVGSRASQIALDWLTSKKVEVILNQS 204
           GGG  G+E+A   A+    K V L+HR  ++L +      +QI  + L   ++ + LN+ 
Sbjct: 144 GGGYIGIEMAE--ALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEE 201

Query: 205 VTLNTISDGLIET-SSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLR 263
           V  +   +  ++  +SG     D   + TG    S   +++ LK  L   G + V+E  +
Sbjct: 202 V-DSIEGEERVKVFTSGGVYQADMVILATGIKPNSELAKDSGLK--LGETGAIWVNEKFQ 258

Query: 264 VRGFKNVFAIGDITDI 279
                N++A GD+ + 
Sbjct: 259 T-SVPNIYAAGDVAES 273

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427

>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase

 Score = 58.4 bits (142), Expect = 2e-09
 Identities = 73/331 (22%), Positives = 120/331 (36%), Gaps = 55/331 (16%)

Query: 19  VVVIGGGVGGSLLAYHIQSFADVVLIDEKEYF-----------------------EITWA 55
           V+VIGGG GG + A         V + EKEY                        EI  A
Sbjct: 4   VIVIGGGPGGYVAAIRAAQLGLKVALVEKEYLGGTCLNVGCIPTKALLHSAEVYDEIKHA 63

Query: 56  SLRAVVEPSFAV---------RSVIN------HGDYLSN-VKIVVSTAVSITDTEVVTAG 99
               +   + +V           V+        G    N V ++   A  +    V   G
Sbjct: 64  KDLGIEVENVSVDWEKMQKRKNKVVKKLVGGVSGLLKKNKVTVIKGEAKFLDPGTVSVTG 123

Query: 100 G---QTFVYDYVVVATGHVESVPKSRTERLSQYEKDFEKVKSANSV----LIVGGGPTGV 152
               +T     +++ATG          +   +         +   V    +I+GGG  GV
Sbjct: 124 ENGEETLEAKNIIIATGSRPRSLPGPFDFDGKVVITSTGALNLEEVPESLVIIGGGVIGV 183

Query: 153 ELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISD 212
           E A  I       KV ++    ++L    +  S++    L  K V+++ N  VT    +D
Sbjct: 184 EFA-SIFASL-GSKVTVIEMLDRILPGEDAEVSKVLQKALKKKGVKILTNTKVTAVEKND 241

Query: 213 GLIETS----SGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFK 268
             +         ET+  +   +  G+   +  L    L   LD RGR++VDE +R     
Sbjct: 242 DQVTYENKGGETETLTGEKVLVAVGRKPNTEGLGLEKLGVELDERGRIVVDEYMRT-NVP 300

Query: 269 NVFAIGDITDIPEIKQGYLAQKHALVTAKNL 299
            ++AIGD+   P +    +A    +V A+N+
Sbjct: 301 GIYAIGDVIGGPMLAH--VASHEGIVAAENI 329

This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460

>gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase

 Score = 56.9 bits (137), Expect = 7e-09
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 6/178 (3%)

Query: 106 DYVVVATGHVESVPK-SRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEI-AVDFP 163
           +++++ATG    +      E      + F   +    VL VGGG   VE AG   A    
Sbjct: 153 EHILLATGSWPQMLGIPGIEHCISSNEAFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPR 212

Query: 164 DKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQS---VTLNTISDGLIETSSG 220
             KV L +R   +L    S   +     L +  + ++ N++   VTLN      +   SG
Sbjct: 213 GGKVTLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESG 272

Query: 221 ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITD 278
           +T+D D   M  G+   +  L+   +   L  +G + VDE  R     N++AIGD+TD
Sbjct: 273 KTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRT-NVPNIYAIGDVTD 329

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. Length = 486

>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase

 Score = 51.8 bits (125), Expect = 8e-09
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVI 200
            V++VGGG  G+E A          KV +V R  +LL       ++I  + L    +EV+
Sbjct: 1   RVVVVGGGYIGLEFA-SALAKL-GSKVTVVERRDRLLRGFDEEIAKILQEKLEKNGIEVL 58

Query: 201 LNQSVT 206
           LN +V 
Sbjct: 59  LNTTVE 64

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 55.2 bits (134), Expect = 2e-08
 Identities = 61/254 (24%), Positives = 95/254 (37%), Gaps = 38/254 (14%)

Query: 64  SFAVRSVINHGDYLSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATG-HVESVPKSR 122
              V  +         +  +  TA    D   V   G+      +V+ATG  V  +P   
Sbjct: 95  GGVVEGLEKK----PKIDKIKGTA-RFVDPNTVEVNGERIEAKNIVIATGSRVPPIPGVW 149

Query: 123 TE---RLSQYEKDFEKVKSANSVLIVGGGPTGVELA------GEIAVDFPDKKVILVHRG 173
                RL   +  FE  K   S+ ++GGG  G+EL       G         KV +  RG
Sbjct: 150 LILGDRLLTSDDAFELDKLPKSLAVIGGGVIGLELGQALSRLG--------VKVTVFERG 201

Query: 174 PKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETS-----SGETIDTDCH 228
            ++L       S+ A   L SK+ ++ L   VT    S              ETI+ D  
Sbjct: 202 DRILPLEDPEVSKQAQKIL-SKEFKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYV 260

Query: 229 FMCTGKAMASSWLRETILKD---SLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQG 285
            + TG+           L++    LD RGR +VDE+ +      ++A GD+   P +   
Sbjct: 261 LVATGRR---PNTDGLGLENTGIELDERGRPVVDEHTQ-TSVPGIYAAGDVNGKPPLL-- 314

Query: 286 YLAQKHALVTAKNL 299
           + A     + A+N 
Sbjct: 315 HEAADEGRIAAENA 328

Length = 460

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 79/327 (24%), Positives = 123/327 (37%), Gaps = 105/327 (32%)

Query: 10  AAGLVEKKKVVVIGGGVGGSLLAYHI-QSFADVVLIDEKEYFEITWASLRAVVE---PSF 65
            AG+  +KKV VIG G  G   AY + ++   V + + +E       +   VV+   P F
Sbjct: 533 PAGIGSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREE-------NAGGVVKNIIPQF 585

Query: 66  A---------VRSVINHGDYLSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATG-HV 115
                     +  V  HG     VK     +  +T  ++   G     YDYVVVA G   
Sbjct: 586 RIPAELIQHDIEFVKAHG-----VKFEFGCSPDLTVEQLKNEG-----YDYVVVAIGADK 635

Query: 116 ESVPKSRTER---------LSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPD-K 165
               K              L +Y+     +K    V++VGGG T ++ A   A+  P  +
Sbjct: 636 NGGLKLEGGNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAA-RAALRVPGVE 694

Query: 166 KVILVHR-------------------GPKLLEFVGSRASQIALDW---LTSKKVE----- 198
           KV +V+R                   G +  E      +  + D    LT + ++     
Sbjct: 695 KVTVVYRRTKQEMPAWREEYEEALEDGVEFKEL----LNPESFDADGTLTCRVMKLGEPD 750

Query: 199 -------VILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDS-- 249
                  V   ++VTL   +D +I T+ GE +DT+                  +LK +  
Sbjct: 751 ESGRRRPVETGETVTLE--ADTVI-TAIGEQVDTE------------------LLKANGI 789

Query: 250 -LDGRGRLMVDENLRVRGFKNVFAIGD 275
            LD +G  +VD N       NV+ IGD
Sbjct: 790 PLDKKGWPVVDANGETS-LTNVYMIGD 815

Length = 1019

>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase

 Score = 51.7 bits (124), Expect = 3e-07
 Identities = 54/229 (23%), Positives = 95/229 (41%), Gaps = 14/229 (6%)

Query: 79  NVKIVVSTAVSITDTEVVTAGGQ-TFVYDYVVVATGHVESVPKSRTERLSQY---EKDFE 134
            V  +   A       V    G+        ++ATG   ++P     + + Y   E+   
Sbjct: 102 GVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGARPAIPPIPGLKEAGYLTSEEALA 161

Query: 135 KVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTS 194
             +   S+ ++GGG  GVELA   A      +V ++ R  +LL       S    + L  
Sbjct: 162 LDRIPESLAVIGGGAIGVELAQAFAR--LGSEVTILQRSDRLLPREEPEISAAVEEALAE 219

Query: 195 KKVEVILNQSVTLNTISDG--LIET---SSGETIDTDCHFMCTGKAMASSWLRETILKDS 249
           + +EV+ +  V   ++  G  +I          ++ D   + TG+   +  L        
Sbjct: 220 EGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVK 279

Query: 250 LDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKN 298
           LD RG ++VDE LR      ++A GD+T   +++  Y+A K  +V A+N
Sbjct: 280 LDERGGILVDETLRTSN-PGIYAAGDVTGGLQLE--YVAAKEGVVAAEN 325

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463

>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase

 Score = 51.7 bits (124), Expect = 3e-07
 Identities = 57/231 (24%), Positives = 101/231 (43%), Gaps = 11/231 (4%)

Query: 74  GDYLSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQYEKDF 133
           GD   N+ +    A  +    + T  G+    D +V+A G    +P +  +   +Y  + 
Sbjct: 101 GDETPNIDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGSRPYIPPAIADSGVRYHTNE 160

Query: 134 EKVKSAN---SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALD 190
           + ++      S++IVGGG    E A          +V +V+R  KLL  +    S    +
Sbjct: 161 DIMRLPELPESLVIVGGGYIAAEFAH--VFSALGTRVTIVNRSTKLLRHLDEDISDRFTE 218

Query: 191 WLTSKKVEVILNQSVT-LNTISDGL-IETSSGETIDTDCHFMCTGKAMASSWLRETILKD 248
            +  KK ++ L ++VT +    DG+ +    G T+  D   + TG+      L       
Sbjct: 219 -IAKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGV 277

Query: 249 SLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNL 299
            +D  GR+ VDE  R    + V+A+GD++   ++K  ++A   A V   NL
Sbjct: 278 EVDEDGRIKVDEYGRTSA-RGVWALGDVSSPYQLK--HVANAEARVVKHNL 325

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452

>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase

 Score = 49.9 bits (120), Expect = 8e-07
 Identities = 47/150 (31%), Positives = 66/150 (44%), Gaps = 30/150 (20%)

Query: 142 VLIVGGGPTGVELA---GEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSK-KV 197
           V +VGGG + +E A     IA     KKV LVHR  K       RA +I LD L    K+
Sbjct: 143 VAVVGGGDSAIEEALYLTRIA-----KKVTLVHRRDKF------RAEKILLDRLKKNPKI 191

Query: 198 EVILNQSV-------TLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSL 250
           E + N +V        +  +      T   E ++ D  F+  G    +  L+  +    L
Sbjct: 192 EFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELEVDGVFIAIGHEPNTELLKGLL---EL 248

Query: 251 DGRGRLMVDENLR--VRGFKNVFAIGDITD 278
           D  G ++ DE +R  V G   VFA GD+ D
Sbjct: 249 DENGYIVTDEGMRTSVPG---VFAAGDVRD 275

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070) [Energy metabolism, Electron transport]. Length = 299

>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional

 Score = 49.0 bits (118), Expect = 2e-06
 Identities = 61/223 (27%), Positives = 94/223 (42%), Gaps = 37/223 (16%)

Query: 94  EVVTAGGQTFVY--DYVVVATGHVESVPKSRTERLSQYEKDFEKVKSANSVL-------- 143
           EV    G+      D +V+ATG       SR  R    + D  ++  ++S+L        
Sbjct: 125 EVECPDGEVETLTADKIVIATG-------SRPYRPPDVDFDHPRIYDSDSILSLDHLPRS 177

Query: 144 --IVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVIL 201
             I G G  G E A   A      KV L++   +LL F+    S      L    V +  
Sbjct: 178 LIIYGAGVIGCEYASIFAA--LGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRH 235

Query: 202 NQSVT-LNTISDGLIET-SSGETIDTDCHFMCTGKAMASSWLR-ETI-LKDSLDGRGRLM 257
           N+ V  +    DG+I    SG+ I  DC     G+   +  L  E   L+   D RG+L 
Sbjct: 236 NEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLE--ADSRGQLK 293

Query: 258 VDENLR--VRGFKNVFAIGDITDIPEI-----KQGYLAQKHAL 293
           V+EN +  V    +++A+GD+   P +      QG +A +HA+
Sbjct: 294 VNENYQTAVP---HIYAVGDVIGFPSLASASMDQGRIAAQHAV 333

Length = 461

>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed

 Score = 47.6 bits (114), Expect = 6e-06
 Identities = 60/255 (23%), Positives = 98/255 (38%), Gaps = 59/255 (23%)

Query: 74  GDYLSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKS------------ 121
           G    N+ +    A  I    + T  G+    D VV+A G    +P              
Sbjct: 98  GRDTPNIDVYRGHARFIGPKTLRTGDGEEITADQVVIAAGSRPVIPPVIADSGVRYHTSD 157

Query: 122 ---RTERLSQYEKDFEKVKSANSVLIVGGGPTGVELA------GEIAVDFPDKKVILVHR 172
              R   L +            S++IVGGG    E A      G         +V +V+R
Sbjct: 158 TIMRLPELPE------------SLVIVGGGFIAAEFAHVFSALG--------VRVTVVNR 197

Query: 173 GPKLL----EFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTD 226
             +LL    + +  R +++A     SK+ +V L ++V   +       +    G T++ D
Sbjct: 198 SGRLLRHLDDDISERFTELA-----SKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEAD 252

Query: 227 CHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLR--VRGFKNVFAIGDITDIPEIKQ 284
              + TG+      L        +D  GR++VDE  R    G   VFA+GD++   ++K 
Sbjct: 253 VLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTSAEG---VFALGDVSSPYQLK- 308

Query: 285 GYLAQKHALVTAKNL 299
            ++A   A V   NL
Sbjct: 309 -HVANHEARVVQHNL 322

Length = 451

>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

 Score = 47.1 bits (112), Expect = 8e-06
 Identities = 50/213 (23%), Positives = 78/213 (36%), Gaps = 52/213 (24%)

Query: 9   TAAGLVEKKKVVVIGGGVGGSLLAYHIQS--FADVVLIDEKEYFEITW-----ASLRAVV 61
              G+     V +IG G  G   AY ++     D V+ ++++    TW       LR   
Sbjct: 1   MTVGVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDS 60

Query: 62  --------------EPSFAVRSVINH--GDYLS----------NVKIVVSTAVSITDTEV 95
                         + +FA  + I     DYL           N ++ V+     T    
Sbjct: 61  PKWLLGFPFLPFRWDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWT 120

Query: 96  VTA---GGQTFVYDYVVVATGHVESVPKS-----------RTERLSQYEKDFEKVKSANS 141
           VT    G      D+VVVATGH+ S P             R    + +  + E ++    
Sbjct: 121 VTTSDGGTGELTADFVVVATGHL-SEPYIPDFAGLDEFKGRILHSADW-PNPEDLR-GKR 177

Query: 142 VLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP 174
           VL++G G + V++A E+A       V L  R P
Sbjct: 178 VLVIGAGASAVDIAPELAEV--GASVTLSQRSP 208

Length = 443

>gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 64/292 (21%), Positives = 117/292 (40%), Gaps = 45/292 (15%)

Query: 14  VEKKKVVVIGGGVGGSLLAYHI--QSF-ADVVLIDEKEY---FEITWASLRAVVEPSFAV 67
           +++K ++++GGG   ++ A  +  Q F  ++ L    E    +E    S   ++E S  +
Sbjct: 1   MKEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFS-DERHLPYERPPLSKSMLLEDSPQL 59

Query: 68  RSVINHGDYLSN---VKIVVSTAVSITDT-EVVTAGGQTFVYDYVVVATGHV-------- 115
           + V+    +  N   +   V+      DT E+V   G+++ +D + +ATG          
Sbjct: 60  QQVLPANWWQENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLPLLD 119

Query: 116 ---ESVPKSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAG---EIAVDFPDKKVIL 169
              E     R        +  E ++   SV+IVG G  G+ELA    +        KV +
Sbjct: 120 ALGERCFTLRH--AGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRC-----KVTV 172

Query: 170 VHRGPKLLEFVGSRASQIALDWL----TSKKVEVILNQSVTLNTISDGLIET-SSGETID 224
           +     ++   G  A      +L        V ++LN ++      + +  T  SGET+ 
Sbjct: 173 IELAATVM---GRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQ 229

Query: 225 TDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDI 276
            D      G +      RE     +LD    +++DE  R      +FA GD+
Sbjct: 230 ADVVIYGIGISANDQLAREA----NLDTANGIVIDEACRTCD-PAIFAGGDV 276

Length = 396

>gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional

 Score = 44.8 bits (107), Expect = 5e-05
 Identities = 50/164 (30%), Positives = 73/164 (44%), Gaps = 46/164 (28%)

Query: 142 VLIVGGGPTGVE----LAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTS-KK 196
           V ++GGG +GVE    LAG I      K V ++   P+L      +A Q+  D L S   
Sbjct: 354 VAVIGGGNSGVEAAIDLAG-IV-----KHVTVLEFAPEL------KADQVLQDKLRSLPN 401

Query: 197 VEVILN----------QSVTLNTISDGL--IETSSGE--TIDTDCHFMCTGKAMASSWLR 242
           V +I N            VT      GL   + ++GE   ++ +  F+  G    + WL+
Sbjct: 402 VTIITNAQTTEVTGDGDKVT------GLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLK 455

Query: 243 ETILKDSLDGRGRLMVDENLR--VRGFKNVFAIGDITDIPEIKQ 284
            T+    L+ RG ++VD      V G   VFA GD T +P  KQ
Sbjct: 456 GTV---ELNRRGEIIVDARGATSVPG---VFAAGDCTTVP-YKQ 492

Length = 517

>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 27/151 (17%)

Query: 142 VLIVGGGPTGVELAGEIA--VDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSK-KVE 198
           V ++GGG +G+E A ++A  V    + V ++    +L      +A ++  D L S   V+
Sbjct: 355 VAVIGGGNSGIEAAIDLAGIV----RHVTVLEFADEL------KADKVLQDKLKSLPNVD 404

Query: 199 VILNQSVTLNTISDG-------LIETSSGE--TIDTDCHFMCTGKAMASSWLRETILKDS 249
           ++ + + T   + DG         + +SGE   +D D  F+  G    + WL++ +    
Sbjct: 405 ILTS-AQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDAV---E 460

Query: 250 LDGRGRLMVDENLRVRGFKNVFAIGDITDIP 280
           L+ RG +++DE  R      +FA GD+T +P
Sbjct: 461 LNRRGEIVIDERGRT-SVPGIFAAGDVTTVP 490

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 515

>gnl|CDD|222141 pfam13454, NAD_binding_9, FAD-NAD(P)-binding

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 26/154 (16%), Positives = 44/154 (28%), Gaps = 61/154 (39%)

Query: 20  VVIGGGVGGSLLAYHIQSFA-----DVVLIDEKE------YF--------------EIT- 53
            +IG G  G  +   +   A     D+ + D         +               +++ 
Sbjct: 1   AIIGAGPRGLSVLERLLRRAPDRPLDITVFDPSPPGAGGVWRTDQPPQLLLNTPAAQMSL 60

Query: 54  ----------WA-----SLRAVVEPSFAVRSVINHGDYLS--------------NVKIVV 84
                     W          +    F  R++   G+YL                V++  
Sbjct: 61  FPDDPPSFLEWLEAQGEEEAGLDPDDFPPRALF--GEYLRWRFSELLARAPAGVTVRVHR 118

Query: 85  STAVSITDT----EVVTAGGQTFVYDYVVVATGH 114
           +  V +        V  A G T   D VV+ATGH
Sbjct: 119 AEVVDLRPRGGGYTVTLADGATLRADAVVLATGH 152

Length = 153

>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 55/235 (23%), Positives = 95/235 (40%), Gaps = 11/235 (4%)

Query: 51  EITWASLRAVVEPSFAVRSVINHGDYLSN--VKIVVSTAVSITDTEV-VTAGGQTFVYDY 107
              W  L A  +   A  S + +   L+N   +++   A  +    V V A G+T+  + 
Sbjct: 75  RFDWKKLLAAKDQEIARLSGL-YRKGLANAGAELLDGRAELVGPNTVEVLASGKTYTAEK 133

Query: 108 VVVATGHVESVPKSRTERLS-QYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKK 166
           +++A G     P      L     + F       S+LI GGG   VE AG         +
Sbjct: 134 ILIAVGGRPPKPALPGHELGITSNEAFHLPTLPKSILIAGGGYIAVEFAGIFR--GLGVQ 191

Query: 167 VILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVT-LNTISDG--LIETSSGETI 223
             L++RG ++L        +     L  + + ++   S+T ++   DG      S  E I
Sbjct: 192 TTLIYRGKEILRGFDDDMRRGLAAALEERGIRILPEDSITSISKDDDGRLKATLSKHEEI 251

Query: 224 DTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITD 278
             D     TG++  ++ L        L+  G + VDE  R     +++A+GD+TD
Sbjct: 252 VADVVLFATGRSPNTNGLGLEAAGVRLNDLGAIAVDEYSRT-STPSIYAVGDVTD 305

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446

>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated

 Score = 42.8 bits (102), Expect = 2e-04
 Identities = 35/152 (23%), Positives = 56/152 (36%), Gaps = 28/152 (18%)

Query: 141 SVLIVGGGPTGVELAG---EIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKV 197
            V +VG G   VE AG    +  +       L  RG   L            + L    V
Sbjct: 169 RVAVVGAGYIAVEFAGVLNGLGSE-----THLFVRGDAPL----RGFDPDIRETL----V 215

Query: 198 EVILNQSVTL--NTI-------SDGL--IETSSGETIDTDCHFMCTGKAMASSWLRETIL 246
           E +  + + L  N +       +DG   +    GET+  DC     G+   +  L     
Sbjct: 216 EEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDGLGLENA 275

Query: 247 KDSLDGRGRLMVDENLRVRGFKNVFAIGDITD 278
              L+ +G ++VDE         ++A+GD+T 
Sbjct: 276 GVKLNEKGYIIVDEYQNT-NVPGIYAVGDVTG 306

Length = 450

>gnl|CDD|222125 pfam13434, K_oxygenase, L-lysine 6-monooxygenase (NADPH-requiring)

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 7/85 (8%)

Query: 97  TAGGQTFVYDYVVVATGHVESVPK----SRTERL---SQYEKDFEKVKSANSVLIVGGGP 149
           T   QT++   +V+ TG    +P+       ER+   S+Y     ++ +   + +VGGG 
Sbjct: 136 TGTEQTYLARNLVLGTGTTPYIPECAKPLPGERVFHSSEYLLRKPRLLAGKRITVVGGGQ 195

Query: 150 TGVELAGEIAVDFPDKKVILVHRGP 174
           +  E+  ++    P  ++  V R P
Sbjct: 196 SAAEIFLDLLRRQPGYQLTWVTRRP 220

This is family of Rossmann fold oxidoreductases that catalyzes the NADPH-dependent hydroxylation of lysine at the N6 position, EC:1.14.13.59. Length = 335

>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 50/218 (22%), Positives = 86/218 (39%), Gaps = 38/218 (17%)

Query: 81  KIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPK-------------SRTERLS 127
            I      ++   E  T   +  + + +++ATG   S P              S  E LS
Sbjct: 120 SIFSPMPGTV-SVETETGENEMIIPENLLIATG---SRPVELPGLPFDGEYVISSDEALS 175

Query: 128 QYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQI 187
                 E +    S++IVGGG  G+E A  +A DF   +V +V    ++L    +  S+ 
Sbjct: 176 -----LETLPK--SLVIVGGGVIGLEWASMLA-DF-GVEVTVVEAADRILPTEDAELSKE 226

Query: 188 ALDWLTSKKVEVILNQSV---TLNTISDGLI-ETSSGE--TIDTDCHFMCTG-KAMASSW 240
               L    V V+    V   TL      LI    +GE  T++ D   +  G +      
Sbjct: 227 VARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGI 286

Query: 241 -LRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDIT 277
            L  T +       G + +D+  + +  ++++AIGD+ 
Sbjct: 287 GLENTDIDVE---GGFIQIDDFCQTK-ERHIYAIGDVI 320

Length = 472

>gnl|CDD|235870 PRK06834, PRK06834, hypothetical protein; Provisional

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 15/66 (22%)

Query: 141 SVLIVGGGPTGVELAGEIA---VDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKV 197
           +V+I GGGPTG+ LAGE+A   VD     V +V R P   E VGSRA       L ++ +
Sbjct: 5   AVVIAGGGPTGLMLAGELALAGVD-----VAIVERRPN-QELVGSRAGG-----LHARTL 53

Query: 198 EVILNQ 203
           EV L+Q
Sbjct: 54  EV-LDQ 58

Length = 488

>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 54/230 (23%), Positives = 92/230 (40%), Gaps = 27/230 (11%)

Query: 105 YDYVVVATGHVESVPKS-----------RTERLSQYEKDFEKVKSANSVLIVGGGPTGVE 153
           YD +++ATG    +P             ++       K+  K +   +++I+G G  G+E
Sbjct: 104 YDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLE 163

Query: 154 LAGEIAVDFPDKKVILVHRGPKLLEFVGSRA-SQIALDWLTSKKVEVILNQSVTLNTISD 212
              E A     K V ++    ++L     +  + +  + L    VE+ LN+ V      D
Sbjct: 164 AV-EAAKHL-GKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGED 221

Query: 213 GL--IETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNV 270
            +  + T  GE  + D   + TG    + +L +T LK      G ++VDE       +N+
Sbjct: 222 KVEGVVTDKGE-YEADVVIVATGVKPNTEFLEDTGLK--TLKNGAIIVDEYGET-SIENI 277

Query: 271 FAIGD---ITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYKPG 317
           +A GD   I +I   K  Y+     L T  N    M+G N         G
Sbjct: 278 YAAGDCATIYNIVSNKNVYV----PLATTANKLGRMVGENLAGRHVSFKG 323

Length = 444

>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 46/208 (22%), Positives = 85/208 (40%), Gaps = 14/208 (6%)

Query: 78  SNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKS-RTERLSQYEKDFEKV 136
           + V ++   A   T    V   G+ +   ++++ATG   S P++     L      F  +
Sbjct: 104 NKVDVIFGHA-RFTKDGTVEVNGRDYTAPHILIATGGKPSFPENIPGAELGTDSDGFFAL 162

Query: 137 KS-ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSK 195
           +     V+IVG G   VELAG +       +  LV R  ++L    S  S+   +    +
Sbjct: 163 EELPKRVVIVGAGYIAVELAGVLHG--LGSETHLVIRHERVLRSFDSMISETITEEYEKE 220

Query: 196 KVEVI-LNQSVTLNTISDGLIE---TSSGETIDTDCHFMCTGKAMASSWLRETILKDSLD 251
            + V  L++ V +    +G +           D D      G+   +  L    +   L+
Sbjct: 221 GINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLN 280

Query: 252 GRGRLMVDE--NLRVRGFKNVFAIGDIT 277
            +G+++VDE  N  V     ++A+GD+ 
Sbjct: 281 EKGQIIVDEYQNTNV---PGIYALGDVV 305

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450

>gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 40/184 (21%), Positives = 78/184 (42%), Gaps = 23/184 (12%)

Query: 105 YDYVVVATGHVESVPKSR------------TERLSQYEKDFEKVKSANSVLIVGGGPTGV 152
           YD ++++ G   +                 T+ + Q+ K   +V  A   L+VG G   +
Sbjct: 106 YDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKA-NQVDKA---LVVGAGYISL 161

Query: 153 ELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISD 212
           E+   +          L+HR  K+ + + +  +Q  LD L  +++   LN+ +  + I+ 
Sbjct: 162 EVLENLYERGLH--PTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEI--DAING 217

Query: 213 GLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFA 272
             +   SG+    D      G    S ++  + +K  LD +G + V++        N++A
Sbjct: 218 NEVTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIK--LDDKGFIPVNDKFET-NVPNIYA 274

Query: 273 IGDI 276
           IGDI
Sbjct: 275 IGDI 278

Length = 438

>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 29/243 (11%)

Query: 45  DEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSN--VKIVVSTAVSITDTEVVTAGGQT 102
           D  EYFE   + L         V  V    D   +  V IV +    + D +V+      
Sbjct: 148 DNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGK--- 204

Query: 103 FVYDYVVVATGHVESVPKSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDF 162
                +++A G+    P  + +  +    DF K+K A  + I G G   VEL   +    
Sbjct: 205 ----NILIAVGNKPIFPDVKGKEFTISSDDFFKIKEAKRIGIAGSGYIAVELIN-VVNRL 259

Query: 163 PDKKVILVHRGPKLLEFVGSRASQIALDWLTS----------KKVEVILNQSVTLNTISD 212
             +  I       L +F  +  +++  D   +          +++E +  +++T+  +SD
Sbjct: 260 GAESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTI-YLSD 318

Query: 213 GLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFA 272
           G       +    D    C G++  +  L    L      +G + VD+N R    K+++A
Sbjct: 319 G------RKYEHFDYVIYCVGRSPNTEDLNLKALNI-KTPKGYIKVDDNQRT-SVKHIYA 370

Query: 273 IGD 275
           +GD
Sbjct: 371 VGD 373

Length = 561

>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed

 Score = 40.8 bits (96), Expect = 9e-04
 Identities = 47/193 (24%), Positives = 88/193 (45%), Gaps = 23/193 (11%)

Query: 99  GGQTFVYDYVVVATG-HVESVP-KSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAG 156
           G +T  +D  ++ATG     +P  S +E +  YE+     +   S++I G G  G+E A 
Sbjct: 130 GTETVTFDNAIIATGSSTRLLPGTSLSENVVTYEEQILSRELPKSIVIAGAGAIGMEFAY 189

Query: 157 EIA--------VDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILN--QSVT 206
            +         V+F D+   L +   ++ + +  +  ++ +  LT  KVE I +    VT
Sbjct: 190 VLKNYGVDVTIVEFLDR--ALPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVT 247

Query: 207 LNTISDGLIETSSGETIDTDCHFMCTGKA--MASSWLRETILKDSLDGRGRLMVDENLRV 264
           + T+S         + ++ D      G A  +    L +T +   L  RG + +D+ +R 
Sbjct: 248 V-TVSKK---DGKAQELEADKVLQAIGFAPRVEGYGLEKTGVA--LTDRGAIAIDDYMRT 301

Query: 265 RGFKNVFAIGDIT 277
               +++AIGD+T
Sbjct: 302 -NVPHIYAIGDVT 313

Length = 466

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 11/104 (10%)

Query: 17  KKVVVIGGGVGGSLLAYHIQSFA-DVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGD 75
           K+VVV+GGG  G  LA  +     +V +++ ++        L    +   A         
Sbjct: 143 KRVVVVGGGYIGLELAAALAKLGKEVTVVERRDRL------LARADDEISAALLEKLEKL 196

Query: 76  YLSNVKI----VVSTAVSITDTEVVTAGGQTFVYDYVVVATGHV 115
            L    +    VV         EV    G+    D V+VA G  
Sbjct: 197 LLGVTVLLVVVVVVKVGDGKVVEVKLGDGEELDADVVLVAIGRR 240

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 4/135 (2%)

Query: 144 IVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQ 203
           I+GGG  GVE A   A +F   KV ++      L       +      L  + V++ILN 
Sbjct: 163 ILGGGYIGVEFASMFA-NF-GSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNA 220

Query: 204 SVTLNTISDGLIETSSGE-TIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENL 262
            V   +  +  ++  S    +  D   + +G+  A++ L       +++ RG ++VD+ L
Sbjct: 221 HVERISHHENQVQVHSEHAQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYL 280

Query: 263 RVRGFKNVFAIGDIT 277
                 N++A+GD+T
Sbjct: 281 HTTA-DNIWAMGDVT 294

Length = 441

>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 69/329 (20%), Positives = 120/329 (36%), Gaps = 73/329 (22%)

Query: 16  KKKVVVIGGG-VGGSLLA---------YHIQSFAD------------VVLIDEKEYFEIT 53
           K+K+V+IG G  G   +          Y I  F +             VL  EK   +I 
Sbjct: 3   KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDI- 61

Query: 54  WASLRAVVEPSFAVRSVINHGDYL--SNVKIVVSTAVSITDTE---VVTAGGQTFVYDYV 108
                            +N  D+   + + +     V   D     V T  G+T  YD +
Sbjct: 62  ----------------SLNRNDWYEENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKL 105

Query: 109 VVATG---HVESVPKSRTERLSQYE--KDFEKVKSANSVL----IVGGGPTGVELAGEIA 159
           ++ATG    +  +P S    +  Y    D E +           ++GGG  G+E A  + 
Sbjct: 106 IIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLK 165

Query: 160 VDFPDKKVILVHRGPKLLEF----VGSRASQIALDWLTSKKVEVILNQSVTLNTISDG-- 213
            D    +V +VH  P L+E        R  +  L+      ++V+L    T   + +   
Sbjct: 166 -DL-GMEVTVVHIAPTLMERQLDRTAGRLLRRKLE---DLGIKVLLE-KNTEEIVGEDKV 219

Query: 214 -LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFA 272
             +  + G  I  D   M  G        +E  L      RG ++V++ ++     +++A
Sbjct: 220 EGVRFADGTEIPADLVVMAVGIRPNDELAKEAGLA---VNRG-IVVNDYMQTSD-PDIYA 274

Query: 273 IGDITDIPEIKQGYLA--QKHALVTAKNL 299
           +G+  +      G +A   + A V A +L
Sbjct: 275 VGECAEHRGKVYGLVAPLYEQAKVLADHL 303

Length = 793

>gnl|CDD|226906 COG4529, COG4529, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 34/151 (22%), Positives = 52/151 (34%), Gaps = 41/151 (27%)

Query: 61  VEPSFAVRSVINHGDYLS-------------NVKIVVSTAVSITDTE------VVTAGGQ 101
              ++  R +   G+YL               V+ +   A S+          V TA G 
Sbjct: 92  DGQAYPPRRLF--GEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGP 149

Query: 102 TFVYDYVVVATGHVESVPKSRTERL---SQYEKDFE------KVKSANSVLIVGGGPTGV 152
           + + D +V+ATGH           L    +   D         V + + VLIVG G T +
Sbjct: 150 SEIADIIVLATGHSAPPADPAARDLKGSPRLIADPYPANALDGVDADDRVLIVGSGLTSI 209

Query: 153 ELAGEIAVDFPDKKVILVHRGPKLLEFVGSR 183
                      D+ ++L  RG K      SR
Sbjct: 210 -----------DQVLVLRRRGHKGPITAISR 229

Length = 474

>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 62/303 (20%), Positives = 109/303 (35%), Gaps = 43/303 (14%)

Query: 15  EKKKVVVIGGGVGGSLLAYHIQSFAD-VVLIDEKEYFE---------------ITWASLR 58
               ++VIG G  G  LA  + S    V L++E +                  +  A   
Sbjct: 2   LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKN 61

Query: 59  AVVEPSFAVRSVINHGDYLSNVKIVVSTAVSITDTEV---------VTAGG--QTFVYDY 107
              E   A ++ +       N  ++  + V + D E          V AG        + 
Sbjct: 62  LSFEQVMATKNTVTSRLRGKNYAMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAET 121

Query: 108 VVVATGHVESVPKSRTERLSQYEKDFEKVKS----ANSVLIVGGGPTGVELAGEIAVDFP 163
           +V+ TG V +V        S++  D   ++S       + I+GGG  G+E AG       
Sbjct: 122 IVINTGAVSNVLPIPGLADSKHVYDSTGIQSLETLPERLGIIGGGNIGLEFAGLYNK--L 179

Query: 164 DKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTIS---DGLIETSSG 220
             KV ++     +L       + +A  ++    +  +LN       +    D ++  +  
Sbjct: 180 GSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLN--AHTTEVKNDGDQVLVVTED 237

Query: 221 ETIDTDCHFMCTGK--AMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITD 278
           ET   D     TG+        L  T ++  L  RG + VD+  +      VFA+GD+  
Sbjct: 238 ETYRFDALLYATGRKPNTEPLGLENTDIE--LTERGAIKVDDYCQT-SVPGVFAVGDVNG 294

Query: 279 IPE 281
            P+
Sbjct: 295 GPQ 297

Length = 438

>gnl|CDD|234447 TIGR04046, MSMEG_0569_nitr, flavin-dependent oxidoreductase, MSMEG_0569 family

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 42/178 (23%), Positives = 68/178 (38%), Gaps = 44/178 (24%)

Query: 19  VVVIGGGVGGSLLAYHIQSFADVVLIDEKEYFEITWASLR----AVVEPS---------- 64
           VV+IG G  G  ++Y+++      ++ EK     +W   R     +V P+          
Sbjct: 3   VVIIGAGQAGLSVSYYLKQAGIDHVVLEKHTVAHSWRDERWDSFCLVTPNWQCRLPGHPY 62

Query: 65  -------FAVRSVINHGDYLS------NVKIVVSTAVS-----ITDTEVVTAGGQTFVYD 106
                  F V+  I    YL       N  +   T V+           V+     F  D
Sbjct: 63  DGTDPDGFMVKDEIV--AYLDGYARSFNPPVREGTEVTSLRKHGAGGFRVSTSAGAFTAD 120

Query: 107 YVVVATG--HVESVPKSRTERL--SQYEKDFEKVKSANS-----VLIVGGGPTGVELA 155
            VV+ATG  HV  +P    ERL     +    + ++ +      VL+VG G +G ++A
Sbjct: 121 QVVIATGGYHVPVIPPL-AERLPADVLQLHSSEYRNPDQLPDGAVLVVGSGQSGCQIA 177

Members of this protein family belong to a conserved seven-gene biosynthetic cluster found sparsely in Cyanobacteria, Proteobacteria, and Actinobacteria. Distant homologies to characterized proteins suggest that members are enzymes dependent on a flavinoid cofactor. Length = 400

>gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large subunit

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 35/171 (20%), Positives = 71/171 (41%), Gaps = 19/171 (11%)

Query: 79  NVKIVVSTAVSITDTE---VVTAGGQTFVYDYVVVATG---HVESVPKSRTERLSQYE-- 130
            + +     V   DT+   V+T  G+T  YD +++ATG    +  +P +  + +  +   
Sbjct: 68  GITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPFILPIPGADKKGVYVFRTI 127

Query: 131 KDFEKVKSA----NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL-EFVGSRAS 185
           +D + + +         ++GGG  G+E A  +     D  VI  H  P L+ + +   A 
Sbjct: 128 EDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVI--HHAPGLMAKQLDQTAG 185

Query: 186 QIALDWLTSKKVEVILNQSVTLNTISDGLIET---SSGETIDTDCHFMCTG 233
           ++    L  K +  +L +  T+  +     +      G +++ D   M  G
Sbjct: 186 RLLQRELEQKGLTFLLEKD-TVEIVGATKADRIRFKDGSSLEADLIVMAAG 235

[Central intermediary metabolism, Nitrogen metabolism]. Length = 785

>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional

 Score = 39.5 bits (93), Expect = 0.003
 Identities = 66/297 (22%), Positives = 118/297 (39%), Gaps = 53/297 (17%)

Query: 17  KKVVVIGGGVGGSLLAYHIQSFA-DVVLIDEKE------YFEITWASL-RAVVEPSFAVR 68
           K+V VIGGG  G   AYH++     V + +          + I    L R V++    ++
Sbjct: 138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAE--IQ 195

Query: 69  SVINHG-DYLSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATG-------HVESVPK 120
            +++ G +    V+  V   +++   E    G     +D V VA G        +     
Sbjct: 196 RILDLGVEVRLGVR--VGEDITLEQLE----GE----FDAVFVAIGAQLGKRLPIPGEDA 245

Query: 121 SR----TERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL 176
           +      + L    +  E       V+++GGG T ++ A   A     ++V +V+R  + 
Sbjct: 246 AGVLDAVDFLRAVGEG-EPPFLGKRVVVIGGGNTAMDAA-RTARRLGAEEVTIVYRRTRE 303

Query: 177 ------LEFVGSRASQIALDWLTS-KKVEVILNQSVTLNTIS---DGLIE-------TSS 219
                  E   +    + ++WL +  ++E   N +  L  I+     L E       T  
Sbjct: 304 DMPAHDEEIEEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGE 363

Query: 220 GETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDI 276
            ET++ D   +  G+ + S+ L    +     GRG + VD N  + G   VFA GD+
Sbjct: 364 EETLEADLVVLAIGQDIDSAGLES--VPGVEVGRGVVQVDPNFMMTGRPGVFAGGDM 418

Length = 564

>gnl|CDD|226160 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 31/153 (20%)

Query: 142 VLIVGGGPTGVE----LAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTS-KK 196
           V ++GGG +GVE    LAG +      + V L+   P+L      +A  +  D L S   
Sbjct: 357 VAVIGGGNSGVEAAIDLAGIV------EHVTLLEFAPEL------KADAVLQDKLRSLPN 404

Query: 197 VEVILNQSVTLNTISDG-------LIETSSGET--IDTDCHFMCTGKAMASSWLRETILK 247
           V +I N + T     DG         +  SGE   ++ +  F+  G    + WL+  +  
Sbjct: 405 VTIITN-AQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGAV-- 461

Query: 248 DSLDGRGRLMVDENLRVRGFKNVFAIGDITDIP 280
             L+ RG ++VD          VFA GD T +P
Sbjct: 462 -ELNRRGEIIVDARGET-NVPGVFAAGDCTTVP 492

Length = 520

>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 68/301 (22%), Positives = 109/301 (36%), Gaps = 53/301 (17%)

Query: 10  AAGLVEKKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYFEITWASLRAVVE---PSFA 66
             G     KV VIG G  G    Y +      V + EK+           VV+   P F 
Sbjct: 531 PQGKSSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKK------EKPGGVVKNIIPEFR 584

Query: 67  VRS-VINHGDYLSNVKIVVSTAVSIT-----DTEVVTAGGQTFVYDYVVVATGHVESVPK 120
           + +  I       ++++V    V        D  V     Q   Y YV++A G  +  P 
Sbjct: 585 ISAESIQK-----DIELVKFHGVEFKYGCSPDLTVAELKNQG--YKYVILAIGAWKHGPL 637

Query: 121 SRT----------ERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPD-KKVIL 169
                        E L  +++          V++VGGG T ++ A   A+  P  +KV +
Sbjct: 638 RLEGGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAA-RAALRVPGVEKVTV 696

Query: 170 VHRGPK------LLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETS----- 218
           V+R  K        E   +    +    L S   E   + ++T   +  G  + S     
Sbjct: 697 VYRRTKRYMPASREELEEALEDGVDFKELLSP--ESFEDGTLTCEVMKLGEPDASGRRRP 754

Query: 219 --SGETID--TDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIG 274
             +GET+D   D      G+ + +  L++      LD  G  +V++        NVF IG
Sbjct: 755 VGTGETVDLPADTVIAAVGEQVDTDLLQK--NGIPLDEYGWPVVNQATGETNITNVFVIG 812

Query: 275 D 275
           D
Sbjct: 813 D 813

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012

>gnl|CDD|237806 PRK14727, PRK14727, putative mercuric reductase; Provisional

 Score = 38.8 bits (90), Expect = 0.004
 Identities = 38/193 (19%), Positives = 74/193 (38%), Gaps = 20/193 (10%)

Query: 99  GGQTFVYDYVVVATGHVESVPKSR----TERLSQYEKDFEKVKSANSVLIVGGGPTGVEL 154
           G +    D  ++ATG   ++P       T   +  E  F     A S+ ++G      E+
Sbjct: 145 GERVLAADRCLIATGSTPTIPPIPGLMDTPYWTSTEALFSDELPA-SLTVIGSSVVAAEI 203

Query: 155 AGEIA-----VDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNT 209
           A   A     V    +  +L    P L    G   +         + +EV+ N   +L  
Sbjct: 204 AQAYARLGSRVTILARSTLLFREDPLL----GETLTAC----FEKEGIEVLNNTQASLVE 255

Query: 210 ISD-GLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFK 268
             D G + T+    +  +   + TG+   +  L    +  + D  G ++V+  +      
Sbjct: 256 HDDNGFVLTTGHGELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSA-P 314

Query: 269 NVFAIGDITDIPE 281
           +++A GD +D+P+
Sbjct: 315 DIYAAGDCSDLPQ 327

Length = 479

>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated

 Score = 38.6 bits (91), Expect = 0.004
 Identities = 45/186 (24%), Positives = 69/186 (37%), Gaps = 42/186 (22%)

Query: 143 LIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILN 202
           +I+GGG  G+E A ++   F   +V ++ RGP+LL       +    + L  + ++V LN
Sbjct: 175 VIIGGGYIGLEFA-QMFRRF-GSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLN 232

Query: 203 QSV-----TLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSL------- 250
                     + I+ GL        I      +  G+   +         D L       
Sbjct: 233 AECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT---------DDLGLEAAGV 283

Query: 251 --DGRGRLMVDENLR--VRGFKNVFAIGDITDIPEIKQGY----LAQKHALVTAKNLKKL 302
             D RG + VD+ LR    G   ++A GD                A   A + A NL  L
Sbjct: 284 ETDARGYIKVDDQLRTTNPG---IYAAGD------CNGRGAFTHTAYNDARIVAANL--L 332

Query: 303 MMGRNK 308
             GR K
Sbjct: 333 DGGRRK 338

Length = 463

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	368
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	100.0
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	100.0
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	100.0
PRK06116	450	glutathione reductase; Validated	100.0
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	100.0
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	100.0
PLN02507	499	glutathione reductase	100.0
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	100.0
PRK13512	438	coenzyme A disulfide reductase; Provisional	100.0
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
PRK06370	463	mercuric reductase; Validated	100.0
PRK07846	451	mycothione reductase; Reviewed	100.0
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	100.0
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	100.0
TIGR02053	463	MerA mercuric reductase. This model represents the	100.0
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
PLN02546	558	glutathione reductase	100.0
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	100.0
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	100.0
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK14727	479	putative mercuric reductase; Provisional	100.0
PRK14694	468	putative mercuric reductase; Provisional	100.0
PRK09564	444	coenzyme A disulfide reductase; Reviewed	100.0
PTZ00058	561	glutathione reductase; Provisional	100.0
PRK07845	466	flavoprotein disulfide reductase; Reviewed	100.0
PRK13748	561	putative mercuric reductase; Provisional	100.0
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	100.0
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	100.0
PRK14989	847	nitrite reductase subunit NirD; Provisional	100.0
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	100.0
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	100.0
PTZ00153	659	lipoamide dehydrogenase; Provisional	100.0
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	100.0
PTZ00052	499	thioredoxin reductase; Provisional	100.0
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	100.0
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	100.0
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	100.0
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	100.0
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	100.0
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	100.0
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	100.0
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	100.0
PRK10262	321	thioredoxin reductase; Provisional	100.0
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	100.0
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	100.0
PRK12831	464	putative oxidoreductase; Provisional	100.0
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	100.0
PRK12770	352	putative glutamate synthase subunit beta; Provisio	100.0
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	100.0
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	100.0
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	100.0
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	100.0
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	100.0
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	100.0
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	100.0
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	99.98
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.98
PRK12814	652	putative NADPH-dependent glutamate synthase small	99.97
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	99.97
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	99.97
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.97
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	99.97
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	99.97
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	99.97
PRK13984	604	putative oxidoreductase; Provisional	99.96
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	99.96
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	99.95
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	99.95
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.94
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	99.94
PLN02852	491	ferredoxin-NADP+ reductase	99.94
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	99.94
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	99.92
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	99.92
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.92
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.85
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.85
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	99.85
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	99.82
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	99.82
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	99.78
KOG2755	334	consensus Oxidoreductase [General function predict	99.78
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	99.76
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.71
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	99.68
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.68
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	99.68
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	99.58
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	99.57
PTZ00188	506	adrenodoxin reductase; Provisional	99.57
COG2081	408	Predicted flavoproteins [General function predicti	99.37
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	99.36
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	99.26
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.1
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.08
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.06
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.96
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.91
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.91
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.91
PRK09897	534	hypothetical protein; Provisional	98.91
COG0579	429	Predicted dehydrogenase [General function predicti	98.89
PRK06847	375	hypothetical protein; Provisional	98.87
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.87
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.83
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.83
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.82
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.81
PRK10157	428	putative oxidoreductase FixC; Provisional	98.79
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.77
PRK10015	429	oxidoreductase; Provisional	98.76
PRK08401	466	L-aspartate oxidase; Provisional	98.76
PLN02463	447	lycopene beta cyclase	98.75
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.75
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.75
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.74
PRK08163	396	salicylate hydroxylase; Provisional	98.74
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.7
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	98.7
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.7
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	98.69
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.69
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.68
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.68
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.67
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.66
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.65
PTZ00383	497	malate:quinone oxidoreductase; Provisional	98.65
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.65
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.65
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.64
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.63
PRK08013	400	oxidoreductase; Provisional	98.63
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.63
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.62
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.62
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.6
PRK07233	434	hypothetical protein; Provisional	98.59
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.59
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.59
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.57
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.57
PRK06184	502	hypothetical protein; Provisional	98.56
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.56
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	98.56
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.56
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.56
PRK06834	488	hypothetical protein; Provisional	98.55
PRK12416	463	protoporphyrinogen oxidase; Provisional	98.55
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.55
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.55
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.54
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.54
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.53
PRK07190	487	hypothetical protein; Provisional	98.51
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.5
PRK05257	494	malate:quinone oxidoreductase; Validated	98.5
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.49
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.48
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.47
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.47
PRK07588	391	hypothetical protein; Provisional	98.47
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.47
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.46
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	98.46
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	98.45
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.45
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.45
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	98.44
PRK06175	433	L-aspartate oxidase; Provisional	98.44
PLN02697	529	lycopene epsilon cyclase	98.44
PRK09126	392	hypothetical protein; Provisional	98.43
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.43
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.43
PRK08274	466	tricarballylate dehydrogenase; Validated	98.42
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.42
COG2907	447	Predicted NAD/FAD-binding protein [General functio	98.42
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.42
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.41
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.41
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.41
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.4
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.39
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.39
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.37
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.36
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.36
PRK07236	386	hypothetical protein; Provisional	98.36
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.35
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.35
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.35
PRK07045	388	putative monooxygenase; Reviewed	98.33
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.31
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.31
PLN02612	567	phytoene desaturase	98.3
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.3
PRK06475	400	salicylate hydroxylase; Provisional	98.29
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.29
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	98.27
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.27
PRK05868	372	hypothetical protein; Validated	98.25
PRK06753	373	hypothetical protein; Provisional	98.24
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.22
PRK06996	398	hypothetical protein; Provisional	98.21
PRK07208	479	hypothetical protein; Provisional	98.19
PLN02985	514	squalene monooxygenase	98.14
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.14
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.12
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.11
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	98.1
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.09
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.08
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	98.06
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	98.06
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.05
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.04
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.04
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	98.03
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.03
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.03
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.02
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.01
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.01
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.0
PLN02661	357	Putative thiazole synthesis	98.0
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.99
PLN02576	496	protoporphyrinogen oxidase	97.99
PLN02268	435	probable polyamine oxidase	97.97
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.97
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.96
PRK06185	407	hypothetical protein; Provisional	97.94
PLN02852	491	ferredoxin-NADP+ reductase	97.94
PRK07236	386	hypothetical protein; Provisional	97.92
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.92
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	97.91
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	97.91
PLN02568	539	polyamine oxidase	97.9
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	97.9
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.89
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.88
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	97.87
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	97.87
PRK11445	351	putative oxidoreductase; Provisional	97.87
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.87
PLN02463	447	lycopene beta cyclase	97.87
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.86
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.85
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	97.85
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	97.85
COG3349	485	Uncharacterized conserved protein [Function unknow	97.84
KOG2853	509	consensus Possible oxidoreductase [General functio	97.83
PRK06126	545	hypothetical protein; Provisional	97.83
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	97.83
PRK12831	464	putative oxidoreductase; Provisional	97.83
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.83
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	97.82
PRK08244	493	hypothetical protein; Provisional	97.82
PRK10262	321	thioredoxin reductase; Provisional	97.81
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	97.81
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.8
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.8
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	97.78
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.78
PRK08294	634	phenol 2-monooxygenase; Provisional	97.78
PRK07846	451	mycothione reductase; Reviewed	97.76
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.76
PRK07538	413	hypothetical protein; Provisional	97.75
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	97.75
PLN02676	487	polyamine oxidase	97.75
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	97.74
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.74
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	97.74
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.73
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	97.72
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.72
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	97.71
PRK09897	534	hypothetical protein; Provisional	97.7
PTZ00367	567	squalene epoxidase; Provisional	97.7
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	97.7
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.69
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.69
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	97.69
PLN02661	357	Putative thiazole synthesis	97.68
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.67
PRK14694	468	putative mercuric reductase; Provisional	97.67
TIGR02053	463	MerA mercuric reductase. This model represents the	97.66
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.66
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.66
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.65
PLN02529	738	lysine-specific histone demethylase 1	97.65
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	97.65
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	97.65
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.64
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.63
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	97.63
PRK06116	450	glutathione reductase; Validated	97.62
PRK06370	463	mercuric reductase; Validated	97.62
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.62
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.58
PLN02487	569	zeta-carotene desaturase	97.58
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	97.58
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.57
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	97.56
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	97.56
PLN02507	499	glutathione reductase	97.56
PRK08244	493	hypothetical protein; Provisional	97.55
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	97.55
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	97.55
PTZ00052	499	thioredoxin reductase; Provisional	97.54
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	97.54
PRK07121	492	hypothetical protein; Validated	97.54
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	97.54
PRK09126	392	hypothetical protein; Provisional	97.53
PLN02328	808	lysine-specific histone demethylase 1 homolog	97.52
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	97.52
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	97.52
PRK05868	372	hypothetical protein; Validated	97.52
PRK07395	553	L-aspartate oxidase; Provisional	97.51
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	97.5
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.5
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.5
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	97.49
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	97.49
PRK12839	572	hypothetical protein; Provisional	97.49
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	97.48
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.47
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	97.47
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.45
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.45
PTZ00188	506	adrenodoxin reductase; Provisional	97.45
PRK08071	510	L-aspartate oxidase; Provisional	97.44
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.41
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	97.41
PRK06753	373	hypothetical protein; Provisional	97.41
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	97.4
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.4
PRK07804	541	L-aspartate oxidase; Provisional	97.4
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	97.39
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.38
PRK07045	388	putative monooxygenase; Reviewed	97.38
PRK13748	561	putative mercuric reductase; Provisional	97.38
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.38
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.37
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	97.37
PRK14727	479	putative mercuric reductase; Provisional	97.37
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	97.35
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.34
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	97.34
PLN02464	627	glycerol-3-phosphate dehydrogenase	97.34
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.33
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.31
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	97.3
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	97.29
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	97.29
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	97.29
KOG2755	334	consensus Oxidoreductase [General function predict	97.29
PRK09077	536	L-aspartate oxidase; Provisional	97.27
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	97.27
PLN02697	529	lycopene epsilon cyclase	97.26
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	97.26
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	97.26
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.24
PLN03000	881	amine oxidase	97.23
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	97.23
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	97.23
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	97.22
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	97.21
PTZ00058	561	glutathione reductase; Provisional	97.21
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.2
PRK02106	560	choline dehydrogenase; Validated	97.2
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.19
PRK08275	554	putative oxidoreductase; Provisional	97.18
PRK13984	604	putative oxidoreductase; Provisional	97.17
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.16
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	97.16
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.13
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	97.13
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	97.12
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.12
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	97.12
PLN02815	594	L-aspartate oxidase	97.11
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	97.1
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	97.09
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	97.09
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.09
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	97.08
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.07
PRK06185	407	hypothetical protein; Provisional	97.05
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.04
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	97.04
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.03
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	97.03
PRK07512	513	L-aspartate oxidase; Provisional	97.02
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	97.02
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	97.01
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	97.01
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	97.0
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	97.0
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	97.0
PLN02976	1713	amine oxidase	96.99
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	96.98
PLN02785	587	Protein HOTHEAD	96.92
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	96.9
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	96.89
PLN02546	558	glutathione reductase	96.86
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	96.86
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	96.86
PRK06567	1028	putative bifunctional glutamate synthase subunit b	96.83
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	96.8
PRK11445	351	putative oxidoreductase; Provisional	96.78
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	96.78
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	96.75
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	96.72
COG3573	552	Predicted oxidoreductase [General function predict	96.71
PRK06126	545	hypothetical protein; Provisional	96.63
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	96.6
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	96.48
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	96.48
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	96.43
PRK07538	413	hypothetical protein; Provisional	96.42
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	96.39
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	96.39
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	96.32
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	96.29
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	96.23
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.22
KOG2960	328	consensus Protein involved in thiamine biosynthesi	96.2
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	96.16
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	96.13
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	96.1
PRK08401	466	L-aspartate oxidase; Provisional	96.05
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	96.03
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	96.01
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	95.93
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.89
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	95.79
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	95.69
PRK08294	634	phenol 2-monooxygenase; Provisional	95.59
KOG2852	380	consensus Possible oxidoreductase [General functio	95.59
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	95.54
PLN02985	514	squalene monooxygenase	95.53
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	95.49
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	95.44
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	95.43
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	95.3
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.18
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	95.17
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	95.17
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	95.16
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.15
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	95.1
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.08
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	95.03
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	95.0
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	94.9
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.84
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	94.74
PRK07121	492	hypothetical protein; Validated	94.65
PRK06719	157	precorrin-2 dehydrogenase; Validated	94.52
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	94.51
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	94.46
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	94.46
PRK08275	554	putative oxidoreductase; Provisional	94.43
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	94.42
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	94.41
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	94.4
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.36
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	94.31
PF02852	110	Pyr_redox_dim: Pyridine nucleotide-disulphide oxid	94.27
KOG2960	328	consensus Protein involved in thiamine biosynthesi	94.26
COG2081	408	Predicted flavoproteins [General function predicti	94.19
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	94.1
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	94.06
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	94.02
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	93.97
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.92
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	93.68
PRK06475	400	salicylate hydroxylase; Provisional	93.67
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	93.67
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	93.6
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	93.57
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	93.54
PRK07395	553	L-aspartate oxidase; Provisional	93.46
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	93.39
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	93.38
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	93.26
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	93.25
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.16
PRK06847	375	hypothetical protein; Provisional	93.01
PRK05562	223	precorrin-2 dehydrogenase; Provisional	92.94
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.91
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	92.89
PRK06184	502	hypothetical protein; Provisional	92.84
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	92.82
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	92.69
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	92.67
PRK07804	541	L-aspartate oxidase; Provisional	92.64

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=100.00  E-value=1.8e-47  Score=346.59  Aligned_cols=328  Identities=29%  Similarity=0.391  Sum_probs=259.1

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc---CCcEEEEcCCCceeeeccceeeeecccccccceeecccccC---ceeEEEeEEE
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLS---NVKIVVSTAV   88 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~   88 (368)
                      .+++|||||||++|+.+|..|.+   +.+|+|||+++++.+.+.......+..-..+...++++.+.   +++++++++.
T Consensus         2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~   81 (405)
T COG1252           2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGEVT   81 (405)
T ss_pred             CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEEEEE
Confidence            46789999999999999999975   38999999999987765443333332222333444444433   4899999999


Q ss_pred             Eeec--cEEEecCCeEEEecEEEEecCCCCCCCCch--------HHHHHHHHHHHH-------HHh------cCCeEEEE
Q 017664           89 SITD--TEVVTAGGQTFVYDYVVVATGHVESVPKSR--------TERLSQYEKDFE-------KVK------SANSVLIV  145 (368)
Q Consensus        89 ~~~~--~~v~~~~g~~~~~d~lvlAtG~~~~~p~~~--------~~~~~~~~~~~~-------~~~------~~~~v~Vv  145 (368)
                      .+|.  ++|.+.++..+.||+||+|+|+.+..++++        .+.+++..+...       ...      ...+++|+
T Consensus        82 ~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~Iv  161 (405)
T COG1252          82 DIDRDAKKVTLADLGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIV  161 (405)
T ss_pred             EEcccCCEEEeCCCccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEE
Confidence            9985  489998878899999999999995544432        122333322211       111      12379999


Q ss_pred             cCchhHHHHHHHHhhhCC-----------CCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCe
Q 017664          146 GGGPTGVELAGEIAVDFP-----------DKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGL  214 (368)
Q Consensus       146 G~g~~~~e~a~~l~~~~~-----------~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~  214 (368)
                      |+|++|+|+|.+|.++..           ..+|+++++.++++|.++++++++.++.|+++||++++++.|++++.+  .
T Consensus       162 GgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~--~  239 (405)
T COG1252         162 GGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPD--G  239 (405)
T ss_pred             CCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCceEEECCC--c
Confidence            999999999999886422           238999999999999999999999999999999999999999977755  7


Q ss_pred             EEcCCCc-EEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCc----cchHHHHH
Q 017664          215 IETSSGE-TIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPE----IKQGYLAQ  289 (368)
Q Consensus       215 v~~~~g~-~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~----~~~~~~a~  289 (368)
                      +.+.+|+ +|++|.+||++|.+++ +++++. .+.+.|++|++.||+++|++++|||||+|||+..+.    |++++.|.
T Consensus       240 v~~~~g~~~I~~~tvvWaaGv~a~-~~~~~l-~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~  317 (405)
T COG1252         240 VTLKDGEEEIPADTVVWAAGVRAS-PLLKDL-SGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAH  317 (405)
T ss_pred             EEEccCCeeEecCEEEEcCCCcCC-hhhhhc-ChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCCCCCCChhHHHH
Confidence            8888887 4999999999999975 466652 123678889999999999999999999999998754    67999999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCccccccCCCeEEEeecCCcceeEecCccccCccceeeec
Q 017664          290 KHALVTAKNLKKLMMGRNKGTMATYKPGYPIALVSLGRREGVAHFPFLTISGRIPGWIKS  349 (368)
Q Consensus       290 ~~g~~aa~~i~~~l~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~k~  349 (368)
                      +||+.+|+||.+.+.|++   +.+|.+.....++++|...|++......+.|..++++|.
T Consensus       318 Qqg~~~a~ni~~~l~g~~---l~~f~y~~~Gtl~~lG~~~av~~~g~~~l~G~~a~~~k~  374 (405)
T COG1252         318 QQGEYAAKNIKARLKGKP---LKPFKYKDKGTLASLGDFSAVADLGGVKLKGFLAWLLKR  374 (405)
T ss_pred             HHHHHHHHHHHHHhcCCC---CCCCcccceEEEEEccCCceeEEecceeeccHHHHHHHH
Confidence            999999999999999974   456776677899999999999998666677777766553

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=100.00  E-value=3.9e-48  Score=359.79  Aligned_cols=342  Identities=25%  Similarity=0.360  Sum_probs=267.6

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeecc---ceee---------------e---ec----c-cc
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWA---SLRA---------------V---VE----P-SF   65 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~---~~~~---------------~---~~----~-~~   65 (368)
                      |+.++|+||||+||||..||.++++ |.+|+++|+.+.+|+...   .+..               .   .+    . .+
T Consensus         1 ~~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~i   80 (454)
T COG1249           1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKI   80 (454)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCc
Confidence            4568999999999999999999984 888999999976653321   1100               0   00    0 01


Q ss_pred             cccceeeccc------------c--cCceeEEEeEEEEeeccEEEecC--CeEEEecEEEEecCCCCCCCC---chHHHH
Q 017664           66 AVRSVINHGD------------Y--LSNVKIVVSTAVSITDTEVVTAG--GQTFVYDYVVVATGHVESVPK---SRTERL  126 (368)
Q Consensus        66 ~~~~~~~~~~------------~--~~~~~~~~~~~~~~~~~~v~~~~--g~~~~~d~lvlAtG~~~~~p~---~~~~~~  126 (368)
                      ....+..+.+            +  ..+++++.+.+.++++++|...+  .++++++++|||||++|..|+   ++...+
T Consensus        81 d~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~~~~~~~~  160 (454)
T COG1249          81 DFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGARI  160 (454)
T ss_pred             CHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCCCCCCCeE
Confidence            1111111110            1  12789999999999999887766  488999999999999987765   444445


Q ss_pred             HHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceee
Q 017664          127 SQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVT  206 (368)
Q Consensus       127 ~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~  206 (368)
                      .+..........+++++|||+|++|+|+|..+++  .|.+||++++.++++|.+|+++++.+.+.|++.|++++++++++
T Consensus       161 ~~s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~--LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~  238 (454)
T COG1249         161 LDSSDALFLLELPKSLVIVGGGYIGLEFASVFAA--LGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVT  238 (454)
T ss_pred             EechhhcccccCCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEE
Confidence            5555544444679999999999999999999984  79999999999999999999999999999999999999999999


Q ss_pred             ecccCCC--eEEcCCCc--EEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCcc
Q 017664          207 LNTISDG--LIETSSGE--TIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEI  282 (368)
Q Consensus       207 ~i~~~~~--~v~~~~g~--~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~  282 (368)
                      .++..++  .+.+++|+  ++++|.+++|+|++||++-+..+.++++++++|+|.||+.+|| +.|||||+|||++.+. 
T Consensus       239 ~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~T-nvp~IyA~GDV~~~~~-  316 (454)
T COG1249         239 AVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTT-NVPGIYAIGDVIGGPM-  316 (454)
T ss_pred             EEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCcccc-CCCCEEEeeccCCCcc-
Confidence            9887655  56777775  7999999999999999997777777779999999999955555 8999999999998765 


Q ss_pred             chHHHHHHHHHHHHHHHHHHHcCCCCC------CccccccCCCeEEEeecCCccee--------EecCcc-----ccCcc
Q 017664          283 KQGYLAQKHALVTAKNLKKLMMGRNKG------TMATYKPGYPIALVSLGRREGVA--------HFPFLT-----ISGRI  343 (368)
Q Consensus       283 ~~~~~a~~~g~~aa~~i~~~l~g~~~~------~~~~~~~~~~~~~~~~g~~~~~~--------~~~~~~-----~~~~~  343 (368)
                       +++.|.+||++||+||+.   +....      |...| ..|+++.||+++.++..        .+++..     ..+..
T Consensus       317 -Lah~A~~eg~iaa~~i~g---~~~~~~d~~~iP~~if-t~Peia~VGlte~ea~~~g~~~~~~~~~f~~~~ra~~~~~~  391 (454)
T COG1249         317 -LAHVAMAEGRIAAENIAG---GKRTPIDYRLIPSVVF-TDPEIASVGLTEEEAKEAGIDYKVGKFPFAANGRAITMGET  391 (454)
T ss_pred             -cHhHHHHHHHHHHHHHhC---CCCCcCcccCCCEEEE-CCCcceeeeCCHHHHHhcCCceEEEEeecccchhHHhccCC
Confidence             899999999999999984   11110      01122 36899999999888753        334322     35667


Q ss_pred             ceeeeccccchhHHHHHcCCCC
Q 017664          344 PGWIKSRDLFVGKTRKQLGLKP  365 (368)
Q Consensus       344 ~~~~k~~~~~~~~~~~~lG~~~  365 (368)
                      .|++|+  ++++++++|||+|+
T Consensus       392 ~G~~Kl--v~d~~t~~IlGahi  411 (454)
T COG1249         392 DGFVKL--VVDKETGRILGAHI  411 (454)
T ss_pred             ceEEEE--EEECCCCeEEEEEE
Confidence            899999  99999999999986

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=100.00  E-value=4.7e-45  Score=344.16  Aligned_cols=329  Identities=21%  Similarity=0.232  Sum_probs=250.8

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccceeeeecccccccceeeccccc--CceeEEEeEEEE
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYL--SNVKIVVSTAVS   89 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~   89 (368)
                      .+++++|||||||+||+.+|+.|.+ +++|+|||+++++.+.+.......+.........+....+  .+++++.+++..
T Consensus         7 ~~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~V~~   86 (424)
T PTZ00318          7 RLKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRAVVYD   86 (424)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEEEEEE
Confidence            3456799999999999999999975 7899999999987665432211111111111111222222  257899999999


Q ss_pred             eecc--EEEe----------cCCeEEEecEEEEecCCCCCCCCchH--------HHHHHHHHHHHH--------------
Q 017664           90 ITDT--EVVT----------AGGQTFVYDYVVVATGHVESVPKSRT--------ERLSQYEKDFEK--------------  135 (368)
Q Consensus        90 ~~~~--~v~~----------~~g~~~~~d~lvlAtG~~~~~p~~~~--------~~~~~~~~~~~~--------------  135 (368)
                      +|+.  .+.+          .++..++||+||||||+.|..|++++        ..+.+.....+.              
T Consensus        87 Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~  166 (424)
T PTZ00318         87 VDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTS  166 (424)
T ss_pred             EEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            9854  5665          45678999999999999965444321        112222211111              


Q ss_pred             ---HhcCCeEEEEcCchhHHHHHHHHhhhC------------CCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEE
Q 017664          136 ---VKSANSVLIVGGGPTGVELAGEIAVDF------------PDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVI  200 (368)
Q Consensus       136 ---~~~~~~v~VvG~g~~~~e~a~~l~~~~------------~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~  200 (368)
                         ....++++|||+|++|+|+|.+|.+..            .+.+|+++++++++++.+++.+.+.+++.|+++||+++
T Consensus       167 ~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~  246 (424)
T PTZ00318        167 VEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIR  246 (424)
T ss_pred             hHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEE
Confidence               112358999999999999999987531            36899999999999998999999999999999999999


Q ss_pred             ecceeeecccCCCeEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCC-
Q 017664          201 LNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDI-  279 (368)
Q Consensus       201 ~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~-  279 (368)
                      +++.|.++..+  .+.+++|+++++|.+||++|.+|+ +++...++  +++++|+|.||+++|++++|||||+|||+.. 
T Consensus       247 ~~~~v~~v~~~--~v~~~~g~~i~~d~vi~~~G~~~~-~~~~~~~l--~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~  321 (424)
T PTZ00318        247 TKTAVKEVLDK--EVVLKDGEVIPTGLVVWSTGVGPG-PLTKQLKV--DKTSRGRISVDDHLRVKPIPNVFALGDCAANE  321 (424)
T ss_pred             eCCeEEEEeCC--EEEECCCCEEEccEEEEccCCCCc-chhhhcCC--cccCCCcEEeCCCcccCCCCCEEEEeccccCC
Confidence            99999987643  688899999999999999999987 56666554  5678899999999998799999999999985 


Q ss_pred             --CccchHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCeEEEeecCCcceeEecCccccCccceeee
Q 017664          280 --PEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYKPGYPIALVSLGRREGVAHFPFLTISGRIPGWIK  348 (368)
Q Consensus       280 --~~~~~~~~a~~~g~~aa~~i~~~l~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~k  348 (368)
                        +.++++..|++||+.+|+||.+.+.|++  +..+|.+.....++++|..+++.+..+..+.|..++++|
T Consensus       322 ~~~~~~~~~~A~~qg~~~A~ni~~~l~g~~--~~~~~~~~~~g~~~~lG~~~av~~~~~~~~~g~~a~~~~  390 (424)
T PTZ00318        322 ERPLPTLAQVASQQGVYLAKEFNNELKGKP--MSKPFVYRSLGSLAYLGNYSAIVQLGAFDLSGFKALLFW  390 (424)
T ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHhcCCC--CCCCCeecCCceEEEecCCceEEEcCCceEecHHHHHHH
Confidence              2356889999999999999999998875  235666666678899999999999877777777666554

>PRK06116 glutathione reductase; Validated

Probab=100.00  E-value=7.7e-46  Score=352.98  Aligned_cols=340  Identities=23%  Similarity=0.285  Sum_probs=252.8

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccc---ee---------------e-----eec---ccc
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWAS---LR---------------A-----VVE---PSF   65 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~---~~---------------~-----~~~---~~~   65 (368)
                      |+.++|++||||||||++||.+|+ .|++|+|||++ .+|+.+..   +.               .     ...   +.+
T Consensus         1 m~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~   79 (450)
T PRK06116          1 MTKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKF   79 (450)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCc
Confidence            345799999999999999999998 59999999986 44432211   00               0     000   000


Q ss_pred             cccceee------------cccc--cCceeEEEeEEEEeeccEEEecCCeEEEecEEEEecCCCCCCCCchHH-HHHHHH
Q 017664           66 AVRSVIN------------HGDY--LSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTE-RLSQYE  130 (368)
Q Consensus        66 ~~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~~-~~~~~~  130 (368)
                      ....+..            ..+.  ..+++++.+++..++++++.+ +++.++||+||||||+.|..|+++.. ...+..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~-~g~~~~~d~lViATGs~p~~p~i~g~~~~~~~~  158 (450)
T PRK06116         80 DWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEV-NGERYTADHILIATGGRPSIPDIPGAEYGITSD  158 (450)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCcceeEchh
Confidence            0000000            0000  136889999999999888887 77889999999999999887765432 122222


Q ss_pred             HHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeeccc
Q 017664          131 KDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTI  210 (368)
Q Consensus       131 ~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~  210 (368)
                      ........+++++|||+|++|+|+|..+.+  .+.+|+++++++.+++.+++++...+.+.+++.||++++++.|.+++.
T Consensus       159 ~~~~~~~~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~  236 (450)
T PRK06116        159 GFFALEELPKRVAVVGAGYIAVEFAGVLNG--LGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEK  236 (450)
T ss_pred             HhhCccccCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEE
Confidence            222222347899999999999999999884  588999999999888889999999999999999999999999999976


Q ss_pred             CC-C--eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHH
Q 017664          211 SD-G--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYL  287 (368)
Q Consensus       211 ~~-~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~  287 (368)
                      ++ +  .+.+.+|+++++|.+|+++|++|+.+.+....+++.++++|++.||+++|| +.|||||+|||++.+.  +++.
T Consensus       237 ~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~~--~~~~  313 (450)
T PRK06116        237 NADGSLTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNT-NVPGIYAVGDVTGRVE--LTPV  313 (450)
T ss_pred             cCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCc-CCCCEEEEeecCCCcC--cHHH
Confidence            43 3  467778889999999999999999886543334447788899999999998 8999999999997543  7899


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCCccc--ccc-----CCCeEEEeecCCcceeEe----------cCcc-----ccCccce
Q 017664          288 AQKHALVTAKNLKKLMMGRNKGTMAT--YKP-----GYPIALVSLGRREGVAHF----------PFLT-----ISGRIPG  345 (368)
Q Consensus       288 a~~~g~~aa~~i~~~l~g~~~~~~~~--~~~-----~~~~~~~~~g~~~~~~~~----------~~~~-----~~~~~~~  345 (368)
                      |.+||+.||+||.    |........  ..|     .|+++.+|+++++|....          ++..     ..+...+
T Consensus       314 A~~~g~~aa~~i~----g~~~~~~~~~~~~p~~if~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  389 (450)
T PRK06116        314 AIAAGRRLSERLF----NNKPDEKLDYSNIPTVVFSHPPIGTVGLTEEEAREQYGEDNVKVYRSSFTPMYTALTGHRQPC  389 (450)
T ss_pred             HHHHHHHHHHHHh----CCCCCCcCCcCCCCeEEeCCCccEEeeCCHHHHHHhCCCCcEEEEEEecchhHHHHhcCCCce
Confidence            9999999999997    322100111  112     478999999887665431          1111     1345689


Q ss_pred             eeeccccchhHHHHHcCCCC
Q 017664          346 WIKSRDLFVGKTRKQLGLKP  365 (368)
Q Consensus       346 ~~k~~~~~~~~~~~~lG~~~  365 (368)
                      ++|+  ++++++++|||+|+
T Consensus       390 ~~kl--v~~~~~~~ilG~~~  407 (450)
T PRK06116        390 LMKL--VVVGKEEKVVGLHG  407 (450)
T ss_pred             EEEE--EEECCCCEEEEEEE
Confidence            9999  99999999999986

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=100.00  E-value=1e-45  Score=350.64  Aligned_cols=338  Identities=22%  Similarity=0.279  Sum_probs=250.1

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeecc---ceeee-------------------ec----ccccc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWA---SLRAV-------------------VE----PSFAV   67 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~---~~~~~-------------------~~----~~~~~   67 (368)
                      +++||+||||||||++||.+|+ .|.+|+|+|++. +|+.+.   .....                   ..    ..+..
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   79 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNW   79 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCH
Confidence            4689999999999999999998 599999999964 444321   11000                   00    00000


Q ss_pred             cceee------------ccccc--CceeEEEeEEEEeeccEEEecCCeEEEecEEEEecCCCCCCC-CchHHHH-HHHHH
Q 017664           68 RSVIN------------HGDYL--SNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVP-KSRTERL-SQYEK  131 (368)
Q Consensus        68 ~~~~~------------~~~~~--~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~p-~~~~~~~-~~~~~  131 (368)
                      ..+..            ....+  .+++++.++....+++++.. ++..+.||+||||||+.|..| +++.... .+...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~i~g~~~~~~~~~  158 (450)
T TIGR01421        80 PELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEV-NGRDYTAPHILIATGGKPSFPENIPGAELGTDSDG  158 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCCCceeEcHHH
Confidence            00000            00111  26788888887777777766 567899999999999998777 5443211 11222


Q ss_pred             HHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccC
Q 017664          132 DFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTIS  211 (368)
Q Consensus       132 ~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~  211 (368)
                      .......+++++|||+|++|+|+|..+.+  .+.+|+++++.+++++.+++++...+.+.|+++||++++++.+.+++.+
T Consensus       159 ~~~~~~~~~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~  236 (450)
T TIGR01421       159 FFALEELPKRVVIVGAGYIAVELAGVLHG--LGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKT  236 (450)
T ss_pred             hhCccccCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEe
Confidence            22222347899999999999999999985  5899999999999999999999999999999999999999999998764


Q ss_pred             C-C--eEEcCCC-cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHH
Q 017664          212 D-G--LIETSSG-ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYL  287 (368)
Q Consensus       212 ~-~--~v~~~~g-~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~  287 (368)
                      + +  .+.+.+| +++++|.+|+++|++|+.+++....+++.++++|++.||+++|| +.|||||+|||++.+.  .++.
T Consensus       237 ~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T-~~p~IyAiGD~~~~~~--~~~~  313 (450)
T TIGR01421       237 VEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNT-NVPGIYALGDVVGKVE--LTPV  313 (450)
T ss_pred             CCceEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcC-CCCCEEEEEecCCCcc--cHHH
Confidence            3 2  4666777 57999999999999999987654555557888999999999998 8999999999997654  7889


Q ss_pred             HHHHHHHHHHHHHHHHcCCCC-------CCccccccCCCeEEEeecCCcceeEe----------cCcc-----ccCccce
Q 017664          288 AQKHALVTAKNLKKLMMGRNK-------GTMATYKPGYPIALVSLGRREGVAHF----------PFLT-----ISGRIPG  345 (368)
Q Consensus       288 a~~~g~~aa~~i~~~l~g~~~-------~~~~~~~~~~~~~~~~~g~~~~~~~~----------~~~~-----~~~~~~~  345 (368)
                      |.+||+.+|+||..   +...       .+...| ..|+++.+|+++++|....          ++..     ..+...+
T Consensus       314 A~~~g~~aa~~i~~---~~~~~~~~~~~~p~~~f-~~p~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g  389 (450)
T TIGR01421       314 AIAAGRKLSERLFN---GKTDDKLDYNNVPTVVF-SHPPIGTIGLTEKEAIEKYGKENIKVYNSSFTPMYYAMTSEKQKC  389 (450)
T ss_pred             HHHHHHHHHHHHhc---CCCCCccCcccCCeEEe-CCCceEEEeCCHHHHHhhcCCCCEEEEEEEcChhHHHHhcCCCce
Confidence            99999999999972   1111       011122 2578999999988775331          1111     1356678


Q ss_pred             eeeccccchhHHHHHcCCCC
Q 017664          346 WIKSRDLFVGKTRKQLGLKP  365 (368)
Q Consensus       346 ~~k~~~~~~~~~~~~lG~~~  365 (368)
                      ++|+  ++++++++|||+|+
T Consensus       390 ~~kl--v~~~~~~~ilG~~~  407 (450)
T TIGR01421       390 RMKL--VCAGKEEKVVGLHG  407 (450)
T ss_pred             EEEE--EEECCCCEEEEEEE
Confidence            9999  99999999999986

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=100.00  E-value=2.4e-45  Score=348.54  Aligned_cols=338  Identities=22%  Similarity=0.228  Sum_probs=249.6

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccc---eeee-------------------e--c-ccccc--
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWAS---LRAV-------------------V--E-PSFAV--   67 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~---~~~~-------------------~--~-~~~~~--   67 (368)
                      ++|++||||||||++||.+++ +|++|+|+|++ .+|+....   ....                   .  . ..+..  
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   80 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKK   80 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHH
Confidence            589999999999999999998 59999999985 45543210   0000                   0  0 00000  


Q ss_pred             ------cceeec----ccc--cCceeEEEeEEEEeeccEEEe-cCCeEEEecEEEEecCCCCCCCCchHHH-HHHHHHHH
Q 017664           68 ------RSVINH----GDY--LSNVKIVVSTAVSITDTEVVT-AGGQTFVYDYVVVATGHVESVPKSRTER-LSQYEKDF  133 (368)
Q Consensus        68 ------~~~~~~----~~~--~~~~~~~~~~~~~~~~~~v~~-~~g~~~~~d~lvlAtG~~~~~p~~~~~~-~~~~~~~~  133 (368)
                            +.....    ...  ..+++++.+++..++++++.. .++..++||+||||||+.|..|++++.. ..+.....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs~p~~p~i~G~~~~~~~~~~~  160 (446)
T TIGR01424        81 LLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGGRPQKPNLPGHELGITSNEAF  160 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCCcCCCCCCCCccceechHHhh
Confidence                  000000    011  126889999999998876543 4567899999999999998777654321 11222222


Q ss_pred             HHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC
Q 017664          134 EKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG  213 (368)
Q Consensus       134 ~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~  213 (368)
                      .....+++++|||+|++|+|+|..+.+  .+.+|+++++++.+++.+++++...+.+.++++||++++++.+.+++.+++
T Consensus       161 ~l~~~~~~vvVIGgG~~g~E~A~~l~~--~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~  238 (446)
T TIGR01424       161 HLPTLPKSILILGGGYIAVEFAGIWRG--LGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDD  238 (446)
T ss_pred             cccccCCeEEEECCcHHHHHHHHHHHH--cCCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC
Confidence            222347899999999999999999874  588999999999988888999999999999999999999999998875443


Q ss_pred             --eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHH
Q 017664          214 --LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKH  291 (368)
Q Consensus       214 --~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~  291 (368)
                        .+.+.+|+++++|.+|+|+|.+|+.+.+....++++++++|++.||+++|| +.|||||+|||++.+.  +++.|.+|
T Consensus       239 ~~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~~--l~~~A~~~  315 (446)
T TIGR01424       239 GLKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRT-SIPSIYAVGDVTDRIN--LTPVAIME  315 (446)
T ss_pred             eEEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCcc-CCCCEEEeeccCCCcc--chhHHHHH
Confidence              566778889999999999999999876544444456788899999999999 8999999999997543  78999999


Q ss_pred             HHHHHHHHHHHHcCCCCC----Cc--cccccCCCeEEEeecCCcceeE--e-------cCcc-----ccCccceeeeccc
Q 017664          292 ALVTAKNLKKLMMGRNKG----TM--ATYKPGYPIALVSLGRREGVAH--F-------PFLT-----ISGRIPGWIKSRD  351 (368)
Q Consensus       292 g~~aa~~i~~~l~g~~~~----~~--~~~~~~~~~~~~~~g~~~~~~~--~-------~~~~-----~~~~~~~~~k~~~  351 (368)
                      |+.+|+||..   +....    ..  ..| ..|+++.+|+++++|...  +       ++..     ..+...+++|+  
T Consensus       316 g~~~a~~i~~---~~~~~~~~~~~p~~if-~~p~ia~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kl--  389 (446)
T TIGR01424       316 ATCFANTEFG---NNPTKFDHDLIATAVF-SQPPLGTVGLTEEEAREKFTGDILVYRAGFRPMKNTFSGRQEKTLMKL--  389 (446)
T ss_pred             HHHHHHHHhc---CCCCccCcCCCCeEEe-CCchhEEEECCHHHHHhhcCCCEEEEEEecCchHhHhhcCCCceEEEE--
Confidence            9999999973   12110    00  112 246889999988766543  1       1111     24555789999  


Q ss_pred             cchhHHHHHcCCCC
Q 017664          352 LFVGKTRKQLGLKP  365 (368)
Q Consensus       352 ~~~~~~~~~lG~~~  365 (368)
                      ++++++++|||+|+
T Consensus       390 i~d~~~~~ilG~~~  403 (446)
T TIGR01424       390 VVDEKDDKVLGAHM  403 (446)
T ss_pred             EEeCCCCEEEEEEE
Confidence            99999999999986

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PLN02507 glutathione reductase

Probab=100.00  E-value=3.5e-45  Score=350.23  Aligned_cols=342  Identities=21%  Similarity=0.225  Sum_probs=250.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcC---------CCceeeeccc---ee---------------e---e-e
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDE---------KEYFEITWAS---LR---------------A---V-V   61 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~---------~~~~~~~~~~---~~---------------~---~-~   61 (368)
                      ..++|++||||||||++||.++. .|.+|+|||+         .+.+|+.+..   ..               .   . .
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~  102 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGW  102 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCc
Confidence            34689999999999999999998 5999999996         2345543211   00               0   0 0


Q ss_pred             c----ccccccceeec--------c----cc--cCceeEEEeEEEEeeccEE--EecCCe--EEEecEEEEecCCCCCCC
Q 017664           62 E----PSFAVRSVINH--------G----DY--LSNVKIVVSTAVSITDTEV--VTAGGQ--TFVYDYVVVATGHVESVP  119 (368)
Q Consensus        62 ~----~~~~~~~~~~~--------~----~~--~~~~~~~~~~~~~~~~~~v--~~~~g~--~~~~d~lvlAtG~~~~~p  119 (368)
                      .    ..+....+...        .    ..  ..+++++++++..++++++  .+.+|+  .+.||+||||||+.|..|
T Consensus       103 ~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~~p  182 (499)
T PLN02507        103 EINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQRP  182 (499)
T ss_pred             ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCCCC
Confidence            0    00111110100        0    01  1378999999999998744  445664  588999999999997766


Q ss_pred             CchHHH-HHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcE
Q 017664          120 KSRTER-LSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVE  198 (368)
Q Consensus       120 ~~~~~~-~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~  198 (368)
                      +++... ..+..........+++++|||+|++|+|+|..+.+  .+.+|+++++.+++++.+++++...+.+.|++.||+
T Consensus       183 ~ipG~~~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~--~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~  260 (499)
T PLN02507        183 NIPGKELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRG--MGATVDLFFRKELPLRGFDDEMRAVVARNLEGRGIN  260 (499)
T ss_pred             CCCCccceechHHhhhhhhcCCeEEEECCcHHHHHHHHHHHH--cCCeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCE
Confidence            554321 12223322222347899999999999999999874  589999999999888889999999999999999999


Q ss_pred             EEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEeccc
Q 017664          199 VILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDI  276 (368)
Q Consensus       199 i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~  276 (368)
                      +++++.|.+++.+++  .+.+.+|+++++|.+++++|++|+.+++....+++.++++|+|.||+++|| +.|||||+|||
T Consensus       261 i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~T-s~p~IyAiGDv  339 (499)
T PLN02507        261 LHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRT-NIPSIWAIGDV  339 (499)
T ss_pred             EEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCcC-CCCCEEEeeEc
Confidence            999999999876544  567778889999999999999999987543444446788899999999998 89999999999


Q ss_pred             CCCCccchHHHHHHHHHHHHHHHHHHHcCCCCC------CccccccCCCeEEEeecCCcceeEe---------cCcc---
Q 017664          277 TDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKG------TMATYKPGYPIALVSLGRREGVAHF---------PFLT---  338 (368)
Q Consensus       277 ~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~~------~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~---  338 (368)
                      ++.+.  +++.|.+||+.+|+||..   +....      +...|+ .|+++.+|+++++|....         ++..   
T Consensus       340 ~~~~~--l~~~A~~qg~~aa~ni~g---~~~~~~~~~~~p~~if~-~p~ia~vGlte~ea~~~~~~~~~~~~~~~~~~~~  413 (499)
T PLN02507        340 TNRIN--LTPVALMEGTCFAKTVFG---GQPTKPDYENVACAVFC-IPPLSVVGLSEEEAVEQAKGDILVFTSSFNPMKN  413 (499)
T ss_pred             CCCCc--cHHHHHHHHHHHHHHHcC---CCCCcCCCCCCCeEEEC-CCccEEEeCCHHHHHhccCCCEEEEEeecCcccc
Confidence            97644  789999999999999972   22111      011111 368999999887665431         2211   


Q ss_pred             -cc-CccceeeeccccchhHHHHHcCCCCC
Q 017664          339 -IS-GRIPGWIKSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       339 -~~-~~~~~~~k~~~~~~~~~~~~lG~~~~  366 (368)
                       +. +...+++|+  ++++++++|||+|+.
T Consensus       414 ~~~~~~~~g~~Kl--i~d~~t~~ilG~~~v  441 (499)
T PLN02507        414 TISGRQEKTVMKL--IVDAETDKVLGASMC  441 (499)
T ss_pred             ccccCCCCEEEEE--EEECCCCEEEEEEEE
Confidence             11 234689998  999999999999863

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=2.6e-45  Score=349.88  Aligned_cols=340  Identities=19%  Similarity=0.277  Sum_probs=251.7

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccc---eee---------------e----e---ccccc
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWAS---LRA---------------V----V---EPSFA   66 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~---~~~---------------~----~---~~~~~   66 (368)
                      |+.++|++||||||||++||.+|++ |++|+|||+++.+|+.+..   +..               .    +   ...+.
T Consensus         1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~   80 (471)
T PRK06467          1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKID   80 (471)
T ss_pred             CCccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcC
Confidence            4567999999999999999999985 9999999998766643211   000               0    0   00000


Q ss_pred             ccceeecc------------cc--cCceeEEEeEEEEeeccEEEe--cCC--eEEEecEEEEecCCCCC-CCCchH--HH
Q 017664           67 VRSVINHG------------DY--LSNVKIVVSTAVSITDTEVVT--AGG--QTFVYDYVVVATGHVES-VPKSRT--ER  125 (368)
Q Consensus        67 ~~~~~~~~------------~~--~~~~~~~~~~~~~~~~~~v~~--~~g--~~~~~d~lvlAtG~~~~-~p~~~~--~~  125 (368)
                      ...+..+.            ..  ..+++++.+.+..++++++..  .+|  ..++||+||||||++|. .|.++.  ..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~~~~  160 (471)
T PRK06467         81 IDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPR  160 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCCCCCc
Confidence            01111000            00  127889999999999886544  345  47999999999999986 444322  22


Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEeccee
Q 017664          126 LSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSV  205 (368)
Q Consensus       126 ~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v  205 (368)
                      +.+.....+....+++++|||+|++|+|+|..+.+  .+.+|+++++.+++++.+++++...+.+.++++ +++++++.+
T Consensus       161 v~~~~~~~~~~~~~~~vvIiGgG~iG~E~A~~l~~--~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v  237 (471)
T PRK06467        161 IWDSTDALELKEVPKRLLVMGGGIIGLEMGTVYHR--LGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKV  237 (471)
T ss_pred             EEChHHhhccccCCCeEEEECCCHHHHHHHHHHHH--cCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEE
Confidence            33333333323347899999999999999999984  589999999999999999999999999999988 999999999


Q ss_pred             eecccCCC--eEEcCC--C--cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCC
Q 017664          206 TLNTISDG--LIETSS--G--ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDI  279 (368)
Q Consensus       206 ~~i~~~~~--~v~~~~--g--~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~  279 (368)
                      ..++.+++  .+.+.+  +  +++++|.+|+++|++|+.+++.....++.++++|+|.||+++|| +.|||||+|||++.
T Consensus       238 ~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t-~~p~VyAiGDv~~~  316 (471)
T PRK06467        238 TAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRT-NVPHIFAIGDIVGQ  316 (471)
T ss_pred             EEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCccc-CCCCEEEehhhcCC
Confidence            98876544  344333  2  46999999999999999987655555567888999999999999 89999999999975


Q ss_pred             CccchHHHHHHHHHHHHHHHHHHHcCCCCC------CccccccCCCeEEEeecCCccee--------EecCc-----ccc
Q 017664          280 PEIKQGYLAQKHALVTAKNLKKLMMGRNKG------TMATYKPGYPIALVSLGRREGVA--------HFPFL-----TIS  340 (368)
Q Consensus       280 ~~~~~~~~a~~~g~~aa~~i~~~l~g~~~~------~~~~~~~~~~~~~~~~g~~~~~~--------~~~~~-----~~~  340 (368)
                      +.  +++.|.+||+.||+||.    |....      +...| ..|+++.+|+++++|..        .+++.     ...
T Consensus       317 ~~--la~~A~~eG~~aa~~i~----g~~~~~~~~~~p~~~~-~~p~ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~  389 (471)
T PRK06467        317 PM--LAHKGVHEGHVAAEVIA----GKKHYFDPKVIPSIAY-TEPEVAWVGLTEKEAKEEGIEYETATFPWAASGRAIAS  389 (471)
T ss_pred             cc--cHHHHHHHHHHHHHHHc----CCCCCCCCCCCCeEEE-CCCceeEEECCHHHHHhcCCCeEEEEEecCcchhhhhC
Confidence            44  78999999999999997    32211      00112 25789999998877653        22322     134


Q ss_pred             CccceeeeccccchhHHHHHcCCCC
Q 017664          341 GRIPGWIKSRDLFVGKTRKQLGLKP  365 (368)
Q Consensus       341 ~~~~~~~k~~~~~~~~~~~~lG~~~  365 (368)
                      +...+++|+  ++++++++|||+|+
T Consensus       390 ~~~~g~~kl--i~d~~t~~ilG~~~  412 (471)
T PRK06467        390 DCADGMTKL--IFDKETHRVLGGAI  412 (471)
T ss_pred             CCCceEEEE--EEECCCCeEEEEEE
Confidence            566899999  99999999999986

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=100.00  E-value=4.3e-45  Score=349.24  Aligned_cols=342  Identities=22%  Similarity=0.282  Sum_probs=255.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeee-------------------------cccccc
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVV-------------------------EPSFAV   67 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~-------------------------~~~~~~   67 (368)
                      +.++||+||||||||++||.+|+ .|.+|+|||+++.+|+.+.......                         ......
T Consensus         3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (461)
T PRK05249          3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITF   82 (461)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCH
Confidence            45699999999999999999997 5999999999877765432110000                         000000


Q ss_pred             cceee------------cccc--cCceeEEEeEEEEeeccEE--EecCCe--EEEecEEEEecCCCCCCCCc---hHHHH
Q 017664           68 RSVIN------------HGDY--LSNVKIVVSTAVSITDTEV--VTAGGQ--TFVYDYVVVATGHVESVPKS---RTERL  126 (368)
Q Consensus        68 ~~~~~------------~~~~--~~~~~~~~~~~~~~~~~~v--~~~~g~--~~~~d~lvlAtG~~~~~p~~---~~~~~  126 (368)
                      ..+..            ..++  ..+++++.+.+..++.+++  ...++.  .+.||+||||||+.|..|+.   ....+
T Consensus        83 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~~~~~~~~v  162 (461)
T PRK05249         83 ADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHPRI  162 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCCCeE
Confidence            00000            0001  1267888888888887754  344553  78999999999999877653   22333


Q ss_pred             HHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceee
Q 017664          127 SQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVT  206 (368)
Q Consensus       127 ~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~  206 (368)
                      .+..........+++++|||+|++|+|+|..+.+  .+.+|+++++.+++++.+++++...+.+.+++.||++++++.++
T Consensus       163 ~~~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~  240 (461)
T PRK05249        163 YDSDSILSLDHLPRSLIIYGAGVIGCEYASIFAA--LGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVE  240 (461)
T ss_pred             EcHHHhhchhhcCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEE
Confidence            3334433334458999999999999999999985  58999999999999999999999999999999999999999999


Q ss_pred             ecccCCC--eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccch
Q 017664          207 LNTISDG--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQ  284 (368)
Q Consensus       207 ~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~  284 (368)
                      +++.+++  .+.+.+|+++++|.+++|+|++|+.+++....+++.++++|++.||+++|| +.|||||+|||++.+.  +
T Consensus       241 ~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyAiGD~~~~~~--~  317 (461)
T PRK05249        241 KVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQT-AVPHIYAVGDVIGFPS--L  317 (461)
T ss_pred             EEEEeCCeEEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCccc-CCCCEEEeeecCCCcc--c
Confidence            8876544  556677889999999999999999886544444557788899999999998 8999999999997544  7


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCcccccc-----CCCeEEEeecCCccee--------EecCc-----cccCcccee
Q 017664          285 GYLAQKHALVTAKNLKKLMMGRNKGTMATYKP-----GYPIALVSLGRREGVA--------HFPFL-----TISGRIPGW  346 (368)
Q Consensus       285 ~~~a~~~g~~aa~~i~~~l~g~~~~~~~~~~~-----~~~~~~~~~g~~~~~~--------~~~~~-----~~~~~~~~~  346 (368)
                      ++.|.+||+.||.||.    |.+....+...|     .|+++.+|+++++|..        .+++.     .+.+...++
T Consensus       318 ~~~A~~~g~~aa~~i~----g~~~~~~~~~~p~~i~~~p~ia~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~  393 (461)
T PRK05249        318 ASASMDQGRIAAQHAV----GEATAHLIEDIPTGIYTIPEISSVGKTEQELTAAKVPYEVGRARFKELARAQIAGDNVGM  393 (461)
T ss_pred             HhHHHHHHHHHHHHHc----CCCcccccCCCCeEEECCCcceEecCCHHHHHHcCCCeEEEEEccccccceeecCCCCcE
Confidence            8999999999999997    332111111112     3688999998876642        22221     134566789


Q ss_pred             eeccccchhHHHHHcCCCCC
Q 017664          347 IKSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       347 ~k~~~~~~~~~~~~lG~~~~  366 (368)
                      +|+  ++++++++|||+|+.
T Consensus       394 ~kl--v~~~~~~~ilG~~~~  411 (461)
T PRK05249        394 LKI--LFHRETLEILGVHCF  411 (461)
T ss_pred             EEE--EEECCCCEEEEEEEE
Confidence            999  999999999999863

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=100.00  E-value=1.6e-44  Score=342.00  Aligned_cols=337  Identities=18%  Similarity=0.275  Sum_probs=251.4

Q ss_pred             CcEEEECCChHHHHHHHHhhc---CCcEEEEcCCCceeeeccceeeeeccccc-ccceeec--cccc--CceeEE-EeEE
Q 017664           17 KKVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYFEITWASLRAVVEPSFA-VRSVINH--GDYL--SNVKIV-VSTA   87 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~--~~~~~~-~~~~   87 (368)
                      ++|||||||+||++||..|++   +++|+|||+++.+.+....+......... .....+.  ..+.  .++++. ..++
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V   81 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV   81 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence            489999999999999999973   78999999999887665444333222111 1111111  1221  267764 4678


Q ss_pred             EEeecc--EEEecCC---e--EEEecEEEEecCCCCCCCCchHH------HHHHHHHHHHHH--hcCCeEEEEcCchhHH
Q 017664           88 VSITDT--EVVTAGG---Q--TFVYDYVVVATGHVESVPKSRTE------RLSQYEKDFEKV--KSANSVLIVGGGPTGV  152 (368)
Q Consensus        88 ~~~~~~--~v~~~~g---~--~~~~d~lvlAtG~~~~~p~~~~~------~~~~~~~~~~~~--~~~~~v~VvG~g~~~~  152 (368)
                      ..+|+.  .+.+.++   .  .++||+||||||+.|..|+++..      .+.+.....+.+  ..+++++|||+|++|+
T Consensus        82 ~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~  161 (438)
T PRK13512         82 IAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISL  161 (438)
T ss_pred             EEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCCCCCCCeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHH
Confidence            888854  5655432   2  47899999999999988875422      233333333222  2368999999999999


Q ss_pred             HHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCCcEEecCEEEEcc
Q 017664          153 ELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCT  232 (368)
Q Consensus       153 e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~  232 (368)
                      |+|..|.+  .+.+|+++++.+++++.+++++...+.+.+++.||++++++.+++++.  ..+.+.+|+++++|.+++++
T Consensus       162 E~A~~l~~--~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~~v~~~~g~~~~~D~vl~a~  237 (438)
T PRK13512        162 EVLENLYE--RGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAING--NEVTFKSGKVEHYDMIIEGV  237 (438)
T ss_pred             HHHHHHHh--CCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeC--CEEEECCCCEEEeCEEEECc
Confidence            99999984  588999999999988889999999999999999999999999998863  36777888899999999999


Q ss_pred             CCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCC--------ccchHHHHHHHHHHHHHHHHHHHc
Q 017664          233 GKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIP--------EIKQGYLAQKHALVTAKNLKKLMM  304 (368)
Q Consensus       233 G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~--------~~~~~~~a~~~g~~aa~~i~~~l~  304 (368)
                      |++|+.+++...++  .++++|++.||+++|| +.|||||+|||++.+        .+++++.|.+||+.+|+||.    
T Consensus       238 G~~pn~~~l~~~gl--~~~~~G~i~Vd~~~~t-~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~----  310 (438)
T PRK13512        238 GTHPNSKFIESSNI--KLDDKGFIPVNDKFET-NVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIA----  310 (438)
T ss_pred             CCCcChHHHHhcCc--ccCCCCcEEECCCccc-CCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhc----
Confidence            99999998877665  5677899999999998 899999999998632        23467889999999999997    


Q ss_pred             CCCCCCcccc-------ccCCCeEEEeecCCcceeE------ecCc----cccCccceeeeccccchhHHHHHcCCCCC
Q 017664          305 GRNKGTMATY-------KPGYPIALVSLGRREGVAH------FPFL----TISGRIPGWIKSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       305 g~~~~~~~~~-------~~~~~~~~~~~g~~~~~~~------~~~~----~~~~~~~~~~k~~~~~~~~~~~~lG~~~~  366 (368)
                      |.+..+...+       ...|+++.+|+++.++...      +.+.    ...+...+++|+  ++++++++|||+|+.
T Consensus       311 g~~~~~~~~~~~~~~~~~~~~~ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~kl--v~d~~~~~ilGa~~~  387 (438)
T PRK13512        311 GNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRV--YYDTSNRKILRAAAV  387 (438)
T ss_pred             CCCccccCCcccceEEEEcCceEEeecCCHHHHccCCcEEEEEecCCcCCCcCCCceEEEEE--EEECCCCeEEEEEEE
Confidence            4321111011       1257888899988776532      1111    124566889999  999999999999873

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=1.4e-44  Score=343.56  Aligned_cols=341  Identities=19%  Similarity=0.278  Sum_probs=250.4

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc-eeeeccceeeee----------cccccc---------ccee--
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY-FEITWASLRAVV----------EPSFAV---------RSVI--   71 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~-~~~~~~~~~~~~----------~~~~~~---------~~~~--   71 (368)
                      +++||+||||||||++||.+|+ +|.+|+|||+++. +|+.+.......          ...+..         ..+.  
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNK   81 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence            4699999999999999999997 5999999999863 554432111000          001100         0000  


Q ss_pred             ecccc--cCceeEEEeEEEEeeccEE--EecCCe-EEEecEEEEecCCCCCCCCchH----HHHHHHHHHHHHHhcCCeE
Q 017664           72 NHGDY--LSNVKIVVSTAVSITDTEV--VTAGGQ-TFVYDYVVVATGHVESVPKSRT----ERLSQYEKDFEKVKSANSV  142 (368)
Q Consensus        72 ~~~~~--~~~~~~~~~~~~~~~~~~v--~~~~g~-~~~~d~lvlAtG~~~~~p~~~~----~~~~~~~~~~~~~~~~~~v  142 (368)
                      ...+.  ..+++++.+++..++++.+  .+.++. .+.||+||+|||++|..|++++    ..+.+..........++++
T Consensus        82 ~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i~G~~~~~~v~~~~~~~~~~~~~~~v  161 (441)
T PRK08010         82 NFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTPGVYDSTGLLNLKELPGHL  161 (441)
T ss_pred             HHHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCCCCccCCCCEEChhHhhcccccCCeE
Confidence            00011  2378899999988987744  445664 6999999999999976665432    1222333333333457899


Q ss_pred             EEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCC
Q 017664          143 LIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSG  220 (368)
Q Consensus       143 ~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g  220 (368)
                      +|+|+|++|+|+|..+.+  .+.+|+++++++++++..++++...+.+.+++.||++++++.+.+++.+++  .+.++++
T Consensus       162 ~ViGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g  239 (441)
T PRK08010        162 GILGGGYIGVEFASMFAN--FGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA  239 (441)
T ss_pred             EEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC
Confidence            999999999999999985  589999999999999988989999999999999999999999999876655  4445555


Q ss_pred             cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHH
Q 017664          221 ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLK  300 (368)
Q Consensus       221 ~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~  300 (368)
                       ++++|.+++++|.+|+.+++....+++.++++|+|.||+++|| +.|||||+|||++.+  ++.+.|..||+.+++||+
T Consensus       240 -~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~--~~~~~a~~~~~~~~~~~~  315 (441)
T PRK08010        240 -QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHT-TADNIWAMGDVTGGL--QFTYISLDDYRIVRDELL  315 (441)
T ss_pred             -eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCccc-CCCCEEEeeecCCCc--cchhHHHHHHHHHHHHHc
Confidence             5999999999999999887654444556788899999999999 899999999999865  478999999999999997


Q ss_pred             HHHcCCCC------CCccccccCCCeEEEeecCCcceeE--------ecCcc-----ccCccceeeeccccchhHHHHHc
Q 017664          301 KLMMGRNK------GTMATYKPGYPIALVSLGRREGVAH--------FPFLT-----ISGRIPGWIKSRDLFVGKTRKQL  361 (368)
Q Consensus       301 ~~l~g~~~------~~~~~~~~~~~~~~~~~g~~~~~~~--------~~~~~-----~~~~~~~~~k~~~~~~~~~~~~l  361 (368)
                      ..  ....      .+...| ..|+++.+|+++++|...        +++..     ..+...+++|+  ++++++++||
T Consensus       316 g~--~~~~~~~~~~~p~~~~-~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl--i~d~~~~~il  390 (441)
T PRK08010        316 GE--GKRSTDDRKNVPYSVF-MTPPLSRVGMTEEQARESGADIQVVTLPVAAIPRARVMNDTRGVLKA--IVDNKTQRIL  390 (441)
T ss_pred             CC--CCcccCccCCCCEEEE-CCCCceeeeCCHHHHHHcCCCeEEEEEecCcChhhhhcCCCceEEEE--EEECCCCEEE
Confidence            21  0110      001112 257899999998776532        22211     23445779998  9999999999


Q ss_pred             CCCCC
Q 017664          362 GLKPT  366 (368)
Q Consensus       362 G~~~~  366 (368)
                      |+|+.
T Consensus       391 G~~~~  395 (441)
T PRK08010        391 GASLL  395 (441)
T ss_pred             EEEEE
Confidence            99863

>PRK06370 mercuric reductase; Validated

Probab=100.00  E-value=1.1e-44  Score=346.15  Aligned_cols=343  Identities=22%  Similarity=0.256  Sum_probs=249.4

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeec---cceee-----------------eec------ccc
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITW---ASLRA-----------------VVE------PSF   65 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~---~~~~~-----------------~~~------~~~   65 (368)
                      |+.++||+||||||||++||.+|+ .|++|+|||+.. +|+.+   .....                 ..+      ..+
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~   80 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL-LGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSV   80 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc-cCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCcc
Confidence            567899999999999999999998 499999999874 33221   11000                 000      011


Q ss_pred             ccccee------------eccccc---CceeEEEeEEEEeeccEEEecCCeEEEecEEEEecCCCCCCCCchH---HHHH
Q 017664           66 AVRSVI------------NHGDYL---SNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRT---ERLS  127 (368)
Q Consensus        66 ~~~~~~------------~~~~~~---~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~---~~~~  127 (368)
                      ....+.            ....++   .+++++.+....++.+++.. ++..++||+||||||+.|..|++++   ..+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v-~~~~~~~d~lViATGs~p~~p~i~G~~~~~~~  159 (463)
T PRK06370         81 DFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRV-GGETLRAKRIFINTGARAAIPPIPGLDEVGYL  159 (463)
T ss_pred             CHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEE-CcEEEEeCEEEEcCCCCCCCCCCCCCCcCceE
Confidence            100000            011111   26888888888888888776 4678999999999999987766542   2222


Q ss_pred             HHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeee
Q 017664          128 QYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTL  207 (368)
Q Consensus       128 ~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~  207 (368)
                      +..........+++++|||+|++|+|+|..+.+  .+.+|+++++.+++++..++++...+.+.+++.||++++++.+.+
T Consensus       160 ~~~~~~~~~~~~~~vvVIGgG~~g~E~A~~l~~--~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~  237 (463)
T PRK06370        160 TNETIFSLDELPEHLVIIGGGYIGLEFAQMFRR--FGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIR  237 (463)
T ss_pred             cchHhhCccccCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEE
Confidence            233332222347999999999999999999985  588999999999999888889999999999999999999999999


Q ss_pred             cccCCC--eEEc---CCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCcc
Q 017664          208 NTISDG--LIET---SSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEI  282 (368)
Q Consensus       208 i~~~~~--~v~~---~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~  282 (368)
                      ++.+++  .+.+   .+++++++|.+|+|+|.+|+.+.+.....++.++++|++.||+++|| +.|||||+|||++.+  
T Consensus       238 i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t-~~~~IyAiGD~~~~~--  314 (463)
T PRK06370        238 VERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRT-TNPGIYAAGDCNGRG--  314 (463)
T ss_pred             EEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcC-CCCCEEEeeecCCCc--
Confidence            876544  3332   23458999999999999999874432333446788899999999998 899999999999764  


Q ss_pred             chHHHHHHHHHHHHHHHHHHHcCCC---CCCccccccCCCeEEEeecCCccee--------EecCcc-----ccCcccee
Q 017664          283 KQGYLAQKHALVTAKNLKKLMMGRN---KGTMATYKPGYPIALVSLGRREGVA--------HFPFLT-----ISGRIPGW  346 (368)
Q Consensus       283 ~~~~~a~~~g~~aa~~i~~~l~g~~---~~~~~~~~~~~~~~~~~~g~~~~~~--------~~~~~~-----~~~~~~~~  346 (368)
                      ++++.|.+||+.||+||........   ..+...| ..|+++.+|+++++|..        .+++..     ..+...++
T Consensus       315 ~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~-~~p~ia~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~  393 (463)
T PRK06370        315 AFTHTAYNDARIVAANLLDGGRRKVSDRIVPYATY-TDPPLARVGMTEAEARKSGRRVLVGTRPMTRVGRAVEKGETQGF  393 (463)
T ss_pred             ccHHHHHHHHHHHHHHHhCCCCCCcccccCCeEEE-cCCCcEeeeCCHHHHHHcCCCeEEEEEecCcchhHHhcCCCCEE
Confidence            4789999999999999973211000   0001112 25788999998876642        222221     24566889


Q ss_pred             eeccccchhHHHHHcCCCC
Q 017664          347 IKSRDLFVGKTRKQLGLKP  365 (368)
Q Consensus       347 ~k~~~~~~~~~~~~lG~~~  365 (368)
                      +|+  ++++++++|||+|+
T Consensus       394 ~kl--i~d~~~~~ilG~~~  410 (463)
T PRK06370        394 MKV--VVDADTDRILGATI  410 (463)
T ss_pred             EEE--EEECCCCEEEEEEE
Confidence            999  99999999999986

>PRK07846 mycothione reductase; Reviewed

Probab=100.00  E-value=2.3e-44  Score=341.33  Aligned_cols=339  Identities=22%  Similarity=0.295  Sum_probs=250.7

Q ss_pred             CCcEEEECCChHHHHHHHHhhcCCcEEEEcCCCceeee---cccee---------------e----eec---ccccc---
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYFEIT---WASLR---------------A----VVE---PSFAV---   67 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~g~~v~lie~~~~~~~~---~~~~~---------------~----~~~---~~~~~---   67 (368)
                      ++|++||||||+|.+||.++ .|.+|+|||++. +|+.   ++...               .    .+.   ..+..   
T Consensus         1 ~yD~vVIG~G~~g~~aa~~~-~G~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   78 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDERF-ADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDI   78 (451)
T ss_pred             CCCEEEECCCHHHHHHHHHH-CCCeEEEEeCCC-CCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHH
Confidence            38999999999999998764 599999999865 3321   10000               0    000   00000   


Q ss_pred             --------cceee-cccc----cCceeEEEeEEEEeeccEEEecCCeEEEecEEEEecCCCCCCCCchH---HHHHHHHH
Q 017664           68 --------RSVIN-HGDY----LSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRT---ERLSQYEK  131 (368)
Q Consensus        68 --------~~~~~-~~~~----~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~---~~~~~~~~  131 (368)
                              +.+.. ..++    ..+++++.+++..+++++|.+.+++.++||+||||||++|..|+++.   ..+.+...
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~~g~~~~~d~lViATGs~p~~p~i~g~~~~~~~~~~~  158 (451)
T PRK07846         79 VSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTGDGEEITADQVVIAAGSRPVIPPVIADSGVRYHTSDT  158 (451)
T ss_pred             HHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEECCCCEEEeCEEEEcCCCCCCCCCCCCcCCccEEchHH
Confidence                    00000 0111    13788999999999999999888888999999999999987776542   22233333


Q ss_pred             HHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccC
Q 017664          132 DFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTIS  211 (368)
Q Consensus       132 ~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~  211 (368)
                      .......+++++|||+|++|+|+|..+.+  .+.+|+++++.+++++.+++++.+.+.+.+ +.+|++++++++++++.+
T Consensus       159 ~~~l~~~~~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~  235 (451)
T PRK07846        159 IMRLPELPESLVIVGGGFIAAEFAHVFSA--LGVRVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLGRNVVGVSQD  235 (451)
T ss_pred             HhhhhhcCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEc
Confidence            33333457999999999999999999984  589999999999999888988888777655 467999999999988765


Q ss_pred             CC--eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHH
Q 017664          212 DG--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQ  289 (368)
Q Consensus       212 ~~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~  289 (368)
                      ++  .+.+.+|+++++|.+++|+|++|+.+++....++++++++|++.||+++|| +.|||||+|||++.+.  +++.|.
T Consensus       236 ~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~T-s~p~IyA~GD~~~~~~--l~~~A~  312 (451)
T PRK07846        236 GSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRT-SAEGVFALGDVSSPYQ--LKHVAN  312 (451)
T ss_pred             CCEEEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCccc-CCCCEEEEeecCCCcc--ChhHHH
Confidence            54  566778889999999999999999988765555557788999999999998 8999999999998644  789999


Q ss_pred             HHHHHHHHHHHHHHc--CCCC--CCccccccCCCeEEEeecCCccee--------EecCcc-----ccCccceeeecccc
Q 017664          290 KHALVTAKNLKKLMM--GRNK--GTMATYKPGYPIALVSLGRREGVA--------HFPFLT-----ISGRIPGWIKSRDL  352 (368)
Q Consensus       290 ~~g~~aa~~i~~~l~--g~~~--~~~~~~~~~~~~~~~~~g~~~~~~--------~~~~~~-----~~~~~~~~~k~~~~  352 (368)
                      +||+++|+||.....  ..+.  -+...| ..|+++.+|+++++|..        .+++..     ..+...+++|+  +
T Consensus       313 ~~g~~~a~ni~~~~~~~~~~~~~~p~~if-~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kl--i  389 (451)
T PRK07846        313 HEARVVQHNLLHPDDLIASDHRFVPAAVF-THPQIASVGLTENEARAAGLDITVKVQNYGDVAYGWAMEDTTGFVKL--I  389 (451)
T ss_pred             HHHHHHHHHHcCCCCccccCCCCCCeEEE-CCCCcEeEeCCHHHHHhcCCCEEEEEEecCcchhhhhCCCCceEEEE--E
Confidence            999999999973210  0001  111122 25789999998887752        222221     24556799999  9


Q ss_pred             chhHHHHHcCCCC
Q 017664          353 FVGKTRKQLGLKP  365 (368)
Q Consensus       353 ~~~~~~~~lG~~~  365 (368)
                      +++++++|||+|+
T Consensus       390 ~d~~~~~ilG~~~  402 (451)
T PRK07846        390 ADRDTGRLLGAHI  402 (451)
T ss_pred             EECCCCEEEEEEE
Confidence            9999999999986

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=100.00  E-value=1.8e-44  Score=343.22  Aligned_cols=342  Identities=21%  Similarity=0.235  Sum_probs=251.2

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc--CCcEEEEcCC--------Cceeeec---ccee---------------e----eec
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS--FADVVLIDEK--------EYFEITW---ASLR---------------A----VVE   62 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~--g~~v~lie~~--------~~~~~~~---~~~~---------------~----~~~   62 (368)
                      +++|++||||||+|++||.++++  |.+|+|||++        +.+|+..   ..+.               .    .+.
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~   81 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE   81 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence            57999999999999999999874  8999999974        3455321   1100               0    000


Q ss_pred             -----ccccccceee------------ccccc---CceeEEEeEEEEeeccEEEecC--------CeEEEecEEEEecCC
Q 017664           63 -----PSFAVRSVIN------------HGDYL---SNVKIVVSTAVSITDTEVVTAG--------GQTFVYDYVVVATGH  114 (368)
Q Consensus        63 -----~~~~~~~~~~------------~~~~~---~~~~~~~~~~~~~~~~~v~~~~--------g~~~~~d~lvlAtG~  114 (368)
                           ..+....+..            ..+.+   .++++++++..+++++++...+        .+.++||+||||||+
T Consensus        82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIATGs  161 (486)
T TIGR01423        82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLATGS  161 (486)
T ss_pred             ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEecCC
Confidence                 0011000000            01112   3789999999999998776532        357999999999999


Q ss_pred             CCCCCCchHH-HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhh-CCCCeEEEEecCcccccccCchhHHHHHHHH
Q 017664          115 VESVPKSRTE-RLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVD-FPDKKVILVHRGPKLLEFVGSRASQIALDWL  192 (368)
Q Consensus       115 ~~~~p~~~~~-~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~-~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l  192 (368)
                      .|..|++++. ...+..........+++++|||+|++|+|+|..+... ..+.+|+++++.+++++.+++++.+.+.+.|
T Consensus       162 ~p~~p~i~G~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~~~~~~l~~~L  241 (486)
T TIGR01423       162 WPQMLGIPGIEHCISSNEAFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQL  241 (486)
T ss_pred             CCCCCCCCChhheechhhhhccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccccCHHHHHHHHHHH
Confidence            9887776532 2223332222223479999999999999999877531 1378999999999999999999999999999


Q ss_pred             HcCCcEEEecceeeecccCC-C--eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCC
Q 017664          193 TSKKVEVILNQSVTLNTISD-G--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKN  269 (368)
Q Consensus       193 ~~~gv~i~~~~~v~~i~~~~-~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~  269 (368)
                      ++.||++++++.+++++.++ +  .+.+.+|+++++|.+|+++|++|+.+++....++++++++|+|.||+++|| +.||
T Consensus       242 ~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~T-s~~~  320 (486)
T TIGR01423       242 RANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRT-NVPN  320 (486)
T ss_pred             HHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCCCcC-CCCC
Confidence            99999999999999887543 2  566777889999999999999999987654445557788899999999998 8999


Q ss_pred             eEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCC-------CccccccCCCeEEEeecCCcceeEe--------
Q 017664          270 VFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKG-------TMATYKPGYPIALVSLGRREGVAHF--------  334 (368)
Q Consensus       270 ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~--------  334 (368)
                      |||+|||++.+.  +++.|.+||+.+|+||+    |....       +...|+ .|+++.+|+++++|....        
T Consensus       321 IyA~GDv~~~~~--l~~~A~~qG~~aa~ni~----g~~~~~~~~~~vp~~vft-~peia~vGlte~eA~~~~~~~~~~~~  393 (486)
T TIGR01423       321 IYAIGDVTDRVM--LTPVAINEGAAFVDTVF----GNKPRKTDHTRVASAVFS-IPPIGTCGLVEEDAAKKFEKVAVYES  393 (486)
T ss_pred             EEEeeecCCCcc--cHHHHHHHHHHHHHHHh----CCCCcccCCCCCCEEEeC-CCceEEeeCCHHHHHhcCCceEEEEE
Confidence            999999997644  78999999999999997    32211       111222 378999999988775432        


Q ss_pred             cCcc----ccCcc--ceeeeccccchhHHHHHcCCCCC
Q 017664          335 PFLT----ISGRI--PGWIKSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       335 ~~~~----~~~~~--~~~~k~~~~~~~~~~~~lG~~~~  366 (368)
                      .+..    ..+..  .+++|+  ++++++++|||+|+.
T Consensus       394 ~~~~~~~~~~~~~~~~g~~Kl--v~d~~~~~iLGa~iv  429 (486)
T TIGR01423       394 SFTPLMHNISGSKYKKFVAKI--VTNHADGTVLGVHLL  429 (486)
T ss_pred             eeCchhhhhccCccCceEEEE--EEECCCCEEEEEEEE
Confidence            1111    11222  578998  999999999999863

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR03452 mycothione_red mycothione reductase

Probab=100.00  E-value=1.4e-43  Score=336.36  Aligned_cols=340  Identities=22%  Similarity=0.285  Sum_probs=248.6

Q ss_pred             CCCcEEEECCChHHHHHHHHhhcCCcEEEEcCCCceeee---cccee---------------e----eec---cccc---
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYFEIT---WASLR---------------A----VVE---PSFA---   66 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~g~~v~lie~~~~~~~~---~~~~~---------------~----~~~---~~~~---   66 (368)
                      +++|++|||+||+|..||.++ .|.+|+|||++. +|+.   +..+.               .    .+.   ..+.   
T Consensus         1 ~~yD~vvIG~G~~g~~aa~~~-~g~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~   78 (452)
T TIGR03452         1 RHYDLIIIGTGSGNSIPDPRF-ADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWPD   78 (452)
T ss_pred             CCcCEEEECCCHHHHHHHHHH-CCCeEEEEeCCC-CCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHHH
Confidence            358999999999999987554 599999999865 3321   10000               0    000   0000   


Q ss_pred             ---------ccceeec-ccc-c----CceeEEEeEEEEeeccEEEecCCeEEEecEEEEecCCCCCCCCc-hHH--HHHH
Q 017664           67 ---------VRSVINH-GDY-L----SNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKS-RTE--RLSQ  128 (368)
Q Consensus        67 ---------~~~~~~~-~~~-~----~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~p~~-~~~--~~~~  128 (368)
                               ...+... ..+ .    .+++++.+.....+.++|.+.+++.++||+||||||+.|..|+. ...  .+.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~~~g~~~~~d~lIiATGs~p~~p~~~~~~~~~~~~  158 (452)
T TIGR03452        79 IVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGSRPYIPPAIADSGVRYHT  158 (452)
T ss_pred             HHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEECCCcEEEeCEEEEEECCCCCCCCCCCCCCCEEEc
Confidence                     0000000 011 1    47899999999999999988888889999999999999988763 211  1223


Q ss_pred             HHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeec
Q 017664          129 YEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLN  208 (368)
Q Consensus       129 ~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  208 (368)
                      .....+....+++++|||+|++|+|+|..|.+  .+.+|+++++.+++++.+++++...+.+.++ .+|++++++.+.++
T Consensus       159 ~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~--~G~~Vtli~~~~~ll~~~d~~~~~~l~~~~~-~gI~i~~~~~V~~i  235 (452)
T TIGR03452       159 NEDIMRLPELPESLVIVGGGYIAAEFAHVFSA--LGTRVTIVNRSTKLLRHLDEDISDRFTEIAK-KKWDIRLGRNVTAV  235 (452)
T ss_pred             HHHHHhhhhcCCcEEEECCCHHHHHHHHHHHh--CCCcEEEEEccCccccccCHHHHHHHHHHHh-cCCEEEeCCEEEEE
Confidence            33333322357999999999999999999984  5889999999999888888888888776554 68999999999998


Q ss_pred             ccCCC--eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHH
Q 017664          209 TISDG--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGY  286 (368)
Q Consensus       209 ~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~  286 (368)
                      +.+++  .+.+.+|+++++|.+++++|++|+.+++....++++++++|++.||+++|| +.|+|||+|||++.+  ++++
T Consensus       236 ~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~--~l~~  312 (452)
T TIGR03452       236 EQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRT-SARGVWALGDVSSPY--QLKH  312 (452)
T ss_pred             EEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCccc-CCCCEEEeecccCcc--cChh
Confidence            76554  566677889999999999999999988665545557788899999999997 899999999999864  4789


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCC--CCc--cccccCCCeEEEeecCCccee--------EecCc-----cccCccceeeec
Q 017664          287 LAQKHALVTAKNLKKLMMGRNK--GTM--ATYKPGYPIALVSLGRREGVA--------HFPFL-----TISGRIPGWIKS  349 (368)
Q Consensus       287 ~a~~~g~~aa~~i~~~l~g~~~--~~~--~~~~~~~~~~~~~~g~~~~~~--------~~~~~-----~~~~~~~~~~k~  349 (368)
                      .|.+||+.+|+||.........  ...  ..| ..|+++.+|+++.+|..        ..++.     ...+...+++|+
T Consensus       313 ~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~i~-t~p~ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kl  391 (452)
T TIGR03452       313 VANAEARVVKHNLLHPNDLRKMPHDFVPSAVF-THPQIATVGLTEQEAREAGHDITVKIQNYGDVAYGWAMEDTTGFCKL  391 (452)
T ss_pred             HHHHHHHHHHHHhcCCCCcccCCCCCCCeEEE-CCCCeeeeeCCHHHHHhcCCCeEEEEecCCchhhHhhcCCCCeEEEE
Confidence            9999999999999732100000  000  112 25789999998887742        22222     123566799999


Q ss_pred             cccchhHHHHHcCCCC
Q 017664          350 RDLFVGKTRKQLGLKP  365 (368)
Q Consensus       350 ~~~~~~~~~~~lG~~~  365 (368)
                        ++++++++|||+|+
T Consensus       392 --v~d~~t~~ilG~~~  405 (452)
T TIGR03452       392 --IADRDTGKLLGAHI  405 (452)
T ss_pred             --EEECCCCEEEEEEE
Confidence              99999999999986

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>TIGR02053 MerA mercuric reductase

Probab=100.00  E-value=3.9e-44  Score=342.47  Aligned_cols=341  Identities=23%  Similarity=0.273  Sum_probs=248.2

Q ss_pred             CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccce---e-----------eeec----------cccccc---
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASL---R-----------AVVE----------PSFAVR---   68 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~---~-----------~~~~----------~~~~~~---   68 (368)
                      +|++||||||||++||.+|+ +|.+|+|||+++ +|+.+...   .           ....          ..+...   
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   79 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL   79 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence            69999999999999999998 599999999976 55432110   0           0000          000000   


Q ss_pred             ----ce-e---e--ccccc--CceeEEEeEEEEeeccEEEecCC-eEEEecEEEEecCCCCCCCCchH---HHHHHHHHH
Q 017664           69 ----SV-I---N--HGDYL--SNVKIVVSTAVSITDTEVVTAGG-QTFVYDYVVVATGHVESVPKSRT---ERLSQYEKD  132 (368)
Q Consensus        69 ----~~-~---~--~~~~~--~~~~~~~~~~~~~~~~~v~~~~g-~~~~~d~lvlAtG~~~~~p~~~~---~~~~~~~~~  132 (368)
                          .. .   .  ..+++  .+++++.+++...+.+++...++ ..++||+||||||+.|..|++++   ..+.+....
T Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~g~~~~~~~~lIiATGs~p~~p~i~G~~~~~~~~~~~~  159 (463)
T TIGR02053        80 EGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGARPAIPPIPGLKEAGYLTSEEA  159 (463)
T ss_pred             HHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEcCCeEEEEeCEEEEcCCCCCCCCCCCCcccCceECchhh
Confidence                00 0   0  11111  26888999998888888887765 46899999999999977665442   223333333


Q ss_pred             HHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCC
Q 017664          133 FEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISD  212 (368)
Q Consensus       133 ~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~  212 (368)
                      ......+++++|||+|++|+|+|..|.+  .+.+|+++++.+++++.+++++...+.+.+++.||+++++++|++++.++
T Consensus       160 ~~~~~~~~~vvIIGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~  237 (463)
T TIGR02053       160 LALDRIPESLAVIGGGAIGVELAQAFAR--LGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRG  237 (463)
T ss_pred             hCcccCCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcC
Confidence            2222346899999999999999999985  58899999999999998999999999999999999999999999887654


Q ss_pred             C--eEEcC---CCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHH
Q 017664          213 G--LIETS---SGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYL  287 (368)
Q Consensus       213 ~--~v~~~---~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~  287 (368)
                      +  .+.+.   +++++++|.+|+|+|.+|+.+.+.....++.++++|++.||+++|| +.|||||+|||++.+  ++++.
T Consensus       238 ~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~VyAiGD~~~~~--~~~~~  314 (463)
T TIGR02053       238 GGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRT-SNPGIYAAGDVTGGL--QLEYV  314 (463)
T ss_pred             CEEEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccC-CCCCEEEeeecCCCc--ccHhH
Confidence            4  33332   2358999999999999999874333333446788899999999998 899999999999864  47899


Q ss_pred             HHHHHHHHHHHHHHHHcCC-CC--CCccccccCCCeEEEeecCCcceeE--------ecCcc-----ccCccceeeeccc
Q 017664          288 AQKHALVTAKNLKKLMMGR-NK--GTMATYKPGYPIALVSLGRREGVAH--------FPFLT-----ISGRIPGWIKSRD  351 (368)
Q Consensus       288 a~~~g~~aa~~i~~~l~g~-~~--~~~~~~~~~~~~~~~~~g~~~~~~~--------~~~~~-----~~~~~~~~~k~~~  351 (368)
                      |.+||+.||.||+...... +.  .+...| ..|+++.+|+++++|...        +++..     +.+...+++|+  
T Consensus       315 A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~-~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl--  391 (463)
T TIGR02053       315 AAKEGVVAAENALGGANAKLDLLVIPRVVF-TDPAVASVGLTEAEAQKAGIECDCRTLPLTNVPRARINRDTRGFIKL--  391 (463)
T ss_pred             HHHHHHHHHHHhcCCCCCccCcCCCCeEEe-ccCceEEEeCCHHHHHhcCCCeEEEEEecccchHHHhcCCCcEEEEE--
Confidence            9999999999997321000 00  011112 358899999988766432        22211     24556889998  


Q ss_pred             cchhHHHHHcCCCCC
Q 017664          352 LFVGKTRKQLGLKPT  366 (368)
Q Consensus       352 ~~~~~~~~~lG~~~~  366 (368)
                      ++++++++|||+|+.
T Consensus       392 i~d~~~~~ilG~~~~  406 (463)
T TIGR02053       392 VAEPGTGKVLGVQVV  406 (463)
T ss_pred             EEECCCCEEEEEEEE
Confidence            999999999999863

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=8.9e-44  Score=340.08  Aligned_cols=338  Identities=22%  Similarity=0.309  Sum_probs=248.6

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccce---eee-------------------e---ccccccc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASL---RAV-------------------V---EPSFAVR   68 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~---~~~-------------------~---~~~~~~~   68 (368)
                      ..+|++||||||||++||..|+ +|.+|+|+|+++ +|+.+...   ...                   .   ...+...
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~   81 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFK   81 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHH
Confidence            4689999999999999999997 599999999987 65433111   000                   0   0000000


Q ss_pred             ceeec------------ccc--cCceeEEEeEEEEeeccEEEec--C-CeEEEecEEEEecCCCCCCC-CchH--HHHHH
Q 017664           69 SVINH------------GDY--LSNVKIVVSTAVSITDTEVVTA--G-GQTFVYDYVVVATGHVESVP-KSRT--ERLSQ  128 (368)
Q Consensus        69 ~~~~~------------~~~--~~~~~~~~~~~~~~~~~~v~~~--~-g~~~~~d~lvlAtG~~~~~p-~~~~--~~~~~  128 (368)
                      .+..+            ...  ..+++++.+++..++++++...  + ++.++||+||||||+.|..| +.+.  ..+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~pg~~~~~~~v~~  161 (462)
T PRK06416         82 KVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRELPGIEIDGRVIWT  161 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCCCCCCCCCCeEEc
Confidence            00000            011  1378899999999988765443  2 46899999999999998654 3321  12223


Q ss_pred             HHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeec
Q 017664          129 YEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLN  208 (368)
Q Consensus       129 ~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  208 (368)
                      ..........+++++|||+|++|+|+|..+.+  .+.+|+++++.+++++.+++++...+.+.++++||++++++.+.++
T Consensus       162 ~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i  239 (462)
T PRK06416        162 SDEALNLDEVPKSLVVIGGGYIGVEFASAYAS--LGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKV  239 (462)
T ss_pred             chHhhCccccCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence            33333223357899999999999999999885  5889999999999999899999999999999999999999999999


Q ss_pred             ccCCC--eEEcCCC---cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccc
Q 017664          209 TISDG--LIETSSG---ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIK  283 (368)
Q Consensus       209 ~~~~~--~v~~~~g---~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~  283 (368)
                      +.+++  .+.+.++   +++++|.+|+++|.+|+.+++.....++.++ +|++.||+++|+ +.|+|||+|||++.+  +
T Consensus       240 ~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~~~~t-~~~~VyAiGD~~~~~--~  315 (462)
T PRK06416        240 EQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQLRT-NVPNIYAIGDIVGGP--M  315 (462)
T ss_pred             EEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECCCCcc-CCCCEEEeeecCCCc--c
Confidence            87654  4555555   6799999999999999988764333344666 899999999998 899999999999754  3


Q ss_pred             hHHHHHHHHHHHHHHHHHHHcCCCCC------CccccccCCCeEEEeecCCcceeE--------ecCc-----cccCccc
Q 017664          284 QGYLAQKHALVTAKNLKKLMMGRNKG------TMATYKPGYPIALVSLGRREGVAH--------FPFL-----TISGRIP  344 (368)
Q Consensus       284 ~~~~a~~~g~~aa~~i~~~l~g~~~~------~~~~~~~~~~~~~~~~g~~~~~~~--------~~~~-----~~~~~~~  344 (368)
                      +++.|.+||+.+|.||..    .+..      +...| ..|.++.+|+++++|...        .++.     .+.+...
T Consensus       316 ~~~~A~~~g~~aa~ni~~----~~~~~~~~~~~~~~~-~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~  390 (462)
T PRK06416        316 LAHKASAEGIIAAEAIAG----NPHPIDYRGIPAVTY-THPEVASVGLTEAKAKEEGFDVKVVKFPFAGNGKALALGETD  390 (462)
T ss_pred             hHHHHHHHHHHHHHHHcC----CCCCCCCCCCCeEEE-CCCceEEEeCCHHHHHhcCCCeEEEEEecCcChHhHhcCCCc
Confidence            789999999999999973    2210      00111 257889999988776532        1211     1345667


Q ss_pred             eeeeccccchhHHHHHcCCCCC
Q 017664          345 GWIKSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       345 ~~~k~~~~~~~~~~~~lG~~~~  366 (368)
                      +++|+  ++++++++|||+|+.
T Consensus       391 g~~kl--i~~~~~~~ilG~~~~  410 (462)
T PRK06416        391 GFVKL--IFDKKDGEVLGAHMV  410 (462)
T ss_pred             eEEEE--EEECCCCEEEEEEEE
Confidence            89999  999999999999863

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=1.8e-43  Score=337.76  Aligned_cols=341  Identities=18%  Similarity=0.253  Sum_probs=245.1

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeecc---ceee-----------eec-----ccc------cc
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWA---SLRA-----------VVE-----PSF------AV   67 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~---~~~~-----------~~~-----~~~------~~   67 (368)
                      +.++|++||||||||++||.+|+ .|.+|+|||++. +|+...   .+..           ...     ...      ..
T Consensus         2 ~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~-~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~   80 (466)
T PRK07818          2 MTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKY-WGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFDY   80 (466)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccCH
Confidence            34699999999999999999997 599999999863 332211   0000           000     000      00


Q ss_pred             cceeec------------ccc--cCceeEEEeEEEEeeccEEEe--cCC--eEEEecEEEEecCCCCCC-CCchH-HHHH
Q 017664           68 RSVINH------------GDY--LSNVKIVVSTAVSITDTEVVT--AGG--QTFVYDYVVVATGHVESV-PKSRT-ERLS  127 (368)
Q Consensus        68 ~~~~~~------------~~~--~~~~~~~~~~~~~~~~~~v~~--~~g--~~~~~d~lvlAtG~~~~~-p~~~~-~~~~  127 (368)
                      ......            ...  ..++..+.+....++.+++..  .++  ..++||+||||||+.|.. |+.+. ..+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~pg~~~~~~v~  160 (466)
T PRK07818         81 GAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLPGTSLSENVV  160 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCCCCCCCCCcEE
Confidence            000000            000  125677888888888876544  344  468999999999999865 44321 1222


Q ss_pred             HHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeee
Q 017664          128 QYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTL  207 (368)
Q Consensus       128 ~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~  207 (368)
                      +..........+++++|+|+|++|+|+|..+++  .+.+|+++++.+++++..++++...+.+.|+++||++++++.|++
T Consensus       161 ~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~--~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~  238 (466)
T PRK07818        161 TYEEQILSRELPKSIVIAGAGAIGMEFAYVLKN--YGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVES  238 (466)
T ss_pred             chHHHhccccCCCeEEEECCcHHHHHHHHHHHH--cCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEE
Confidence            333222222357899999999999999999985  588999999999999989999999999999999999999999999


Q ss_pred             cccCCC--eEEcC--CC--cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCc
Q 017664          208 NTISDG--LIETS--SG--ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPE  281 (368)
Q Consensus       208 i~~~~~--~v~~~--~g--~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~  281 (368)
                      ++.+++  .+.+.  +|  +++++|.+|+++|++|+.+++.....++.++++|++.||+++|| +.|||||+|||++.+ 
T Consensus       239 i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~p~IyAiGD~~~~~-  316 (466)
T PRK07818        239 IDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRT-NVPHIYAIGDVTAKL-  316 (466)
T ss_pred             EEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCccc-CCCCEEEEeecCCCc-
Confidence            876554  33332  56  47999999999999999886543344446778899999999998 899999999999753 


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHcCCCCCCcccc--c-----cCCCeEEEeecCCcceeE--------ecCc-----cccC
Q 017664          282 IKQGYLAQKHALVTAKNLKKLMMGRNKGTMATY--K-----PGYPIALVSLGRREGVAH--------FPFL-----TISG  341 (368)
Q Consensus       282 ~~~~~~a~~~g~~aa~~i~~~l~g~~~~~~~~~--~-----~~~~~~~~~~g~~~~~~~--------~~~~-----~~~~  341 (368)
                       ++++.|.+||+.||+||+    |.+..+...|  .     ..|+++.+|+++++|...        +++.     ...+
T Consensus       317 -~l~~~A~~~g~~aa~~i~----g~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~  391 (466)
T PRK07818        317 -QLAHVAEAQGVVAAETIA----GAETLELGDYRMMPRATFCQPQVASFGLTEEQAREEGYDVKVAKFPFTANGKAHGLG  391 (466)
T ss_pred             -ccHhHHHHHHHHHHHHHc----CCCCCccCccCCCCeEEECCCCeEEEeCCHHHHHhCCCcEEEEEEECCccchhhhcC
Confidence             489999999999999997    3321111111  1     257899999988776432        2221     1245


Q ss_pred             ccceeeeccccchhHHHHHcCCCCC
Q 017664          342 RIPGWIKSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       342 ~~~~~~k~~~~~~~~~~~~lG~~~~  366 (368)
                      ...+++|+  ++++++++|||+|+.
T Consensus       392 ~~~g~~Kl--v~~~~~~~ilG~~~v  414 (466)
T PRK07818        392 DPTGFVKL--VADAKYGELLGGHLI  414 (466)
T ss_pred             CCCeEEEE--EEECCCCeEEEEEEE
Confidence            66789999  999999999999863

>PLN02546 glutathione reductase

Probab=100.00  E-value=1.7e-43  Score=340.00  Aligned_cols=339  Identities=21%  Similarity=0.240  Sum_probs=249.0

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCC---------Cceeeecc--------ce----------ee----ee-
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEK---------EYFEITWA--------SL----------RA----VV-   61 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~---------~~~~~~~~--------~~----------~~----~~-   61 (368)
                      .++|++||||||||+.||..++ .|.+|+|||+.         ..+|+...        .+          ..    .+ 
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~  157 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWK  157 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCcc
Confidence            4689999999999999999998 59999999962         22332110        00          00    00 


Q ss_pred             ---ccccccccee------------eccccc--CceeEEEeEEEEeeccEEEecCCeEEEecEEEEecCCCCCCCCchH-
Q 017664           62 ---EPSFAVRSVI------------NHGDYL--SNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRT-  123 (368)
Q Consensus        62 ---~~~~~~~~~~------------~~~~~~--~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~-  123 (368)
                         ...+....+.            .+.+.+  .+++++.+++..++++++.. +|+.+.||+||||||++|..|++++ 
T Consensus       158 ~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v-~G~~~~~D~LVIATGs~p~~P~IpG~  236 (558)
T PLN02546        158 YETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDV-DGKLYTARNILIAVGGRPFIPDIPGI  236 (558)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEE-CCEEEECCEEEEeCCCCCCCCCCCCh
Confidence               0001000000            011111  26899999999999998876 5778999999999999987776653 


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecc
Q 017664          124 ERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQ  203 (368)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~  203 (368)
                      +.+.+..........+++++|||+|++|+|+|..+.+  .+.+|+++++.+++++.+++++...+.+.|+++||++++++
T Consensus       237 ~~v~~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~~--~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~  314 (558)
T PLN02546        237 EHAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNG--LKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEE  314 (558)
T ss_pred             hhccCHHHHHhccccCCeEEEECCCHHHHHHHHHHHh--cCCeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCC
Confidence            2233444443333468999999999999999999884  58899999999999999999999999999999999999999


Q ss_pred             eeeecccC-CC--eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCC
Q 017664          204 SVTLNTIS-DG--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIP  280 (368)
Q Consensus       204 ~v~~i~~~-~~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~  280 (368)
                      .+.+++.. ++  .+.+.+++...+|.+|+++|++|+.+++....++++++++|+|.||+++|| +.|||||+|||++.+
T Consensus       315 ~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~T-s~p~IYAaGDv~~~~  393 (558)
T PLN02546        315 SPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRT-SVPSIWAVGDVTDRI  393 (558)
T ss_pred             EEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCcee-CCCCEEEeeccCCCc
Confidence            99988653 33  344555555558999999999999986543334447788899999999998 899999999999764


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHcCCCCC-Ccccccc-----CCCeEEEeecCCcceeE--------ecCcc----ccC-
Q 017664          281 EIKQGYLAQKHALVTAKNLKKLMMGRNKG-TMATYKP-----GYPIALVSLGRREGVAH--------FPFLT----ISG-  341 (368)
Q Consensus       281 ~~~~~~~a~~~g~~aa~~i~~~l~g~~~~-~~~~~~~-----~~~~~~~~~g~~~~~~~--------~~~~~----~~~-  341 (368)
                      .  +++.|.+||+.+|+||.    |.+.. ..+...|     .|+++.+|+++++|...        .++..    +.+ 
T Consensus       394 ~--l~~~A~~~g~~~a~~i~----g~~~~~~~~~~vp~~vft~Peia~VGlte~eA~~~g~~~~~~~~~~~~~~~~~~~~  467 (558)
T PLN02546        394 N--LTPVALMEGGALAKTLF----GNEPTKPDYRAVPSAVFSQPPIGQVGLTEEQAIEEYGDVDVFTANFRPLKATLSGL  467 (558)
T ss_pred             c--cHHHHHHHHHHHHHHHc----CCCCCcCCCCCCCEEEeCCchHhhccCCHHHHHHcCCCeEEEEEecccchhhhhCC
Confidence            4  78899999999999997    32211 0011111     47888899988876542        11111    122 


Q ss_pred             ccceeeeccccchhHHHHHcCCCC
Q 017664          342 RIPGWIKSRDLFVGKTRKQLGLKP  365 (368)
Q Consensus       342 ~~~~~~k~~~~~~~~~~~~lG~~~  365 (368)
                      ...+++|+  ++++++++|||+|+
T Consensus       468 ~~~g~~Kl--v~d~~t~~ILGa~i  489 (558)
T PLN02546        468 PDRVFMKL--IVCAKTNKVLGVHM  489 (558)
T ss_pred             CCcEEEEE--EEECCCCEEEEEEE
Confidence            34689999  99999999999986

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=3.7e-43  Score=333.41  Aligned_cols=344  Identities=19%  Similarity=0.216  Sum_probs=248.6

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc-eeeecc---ceeeee-------cccccc----------cceee
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY-FEITWA---SLRAVV-------EPSFAV----------RSVIN   72 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~-~~~~~~---~~~~~~-------~~~~~~----------~~~~~   72 (368)
                      +++||+||||||||++||..|+ +|++|+|||+++. +|+...   .+....       ...+..          +....
T Consensus         2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGK   81 (438)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999998 5999999999864 454321   111000       000000          00000


Q ss_pred             cccc--cCceeEEEeEEEEeeccEEEecC---CeEEEecEEEEecCCCCCCCCchH----HHHHHHHHHHHHHhcCCeEE
Q 017664           73 HGDY--LSNVKIVVSTAVSITDTEVVTAG---GQTFVYDYVVVATGHVESVPKSRT----ERLSQYEKDFEKVKSANSVL  143 (368)
Q Consensus        73 ~~~~--~~~~~~~~~~~~~~~~~~v~~~~---g~~~~~d~lvlAtG~~~~~p~~~~----~~~~~~~~~~~~~~~~~~v~  143 (368)
                      ..+.  ..+++++...+.+++.+++...+   ...+.||+||||||++|..|++++    ..+.+..........+++++
T Consensus        82 ~~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~i~G~~~~~~v~~~~~~~~~~~~~~~vv  161 (438)
T PRK07251         82 NYAMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLADSKHVYDSTGIQSLETLPERLG  161 (438)
T ss_pred             HHHHHHhCCCEEEEEEEEEccCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCCCCCcCCCCcEEchHHHhcchhcCCeEE
Confidence            0011  13788899988888888776543   347999999999999976554332    22333333333334578999


Q ss_pred             EEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCe-EEcCCCcE
Q 017664          144 IVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGL-IETSSGET  222 (368)
Q Consensus       144 VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~-v~~~~g~~  222 (368)
                      |||+|++|+|+|..+++  .+.+|+++++.+++++..++++...+.+.++++||++++++.+.+++.+++. +...++++
T Consensus       162 IIGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~  239 (438)
T PRK07251        162 IIGGGNIGLEFAGLYNK--LGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDET  239 (438)
T ss_pred             EECCCHHHHHHHHHHHH--cCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCeE
Confidence            99999999999999984  5889999999999998888899999999999999999999999998765542 33345678


Q ss_pred             EecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHH
Q 017664          223 IDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKL  302 (368)
Q Consensus       223 i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~  302 (368)
                      +++|.+|+|+|.+|+.+.+.....++..+++|++.||+++|| +.|||||+|||++.+.  +.+.|..+|+.++.++...
T Consensus       240 i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t-~~~~IyaiGD~~~~~~--~~~~a~~~~~~~~~~~~~~  316 (438)
T PRK07251        240 YRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQT-SVPGVFAVGDVNGGPQ--FTYISLDDFRIVFGYLTGD  316 (438)
T ss_pred             EEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCccc-CCCCEEEeeecCCCcc--cHhHHHHHHHHHHHHHcCC
Confidence            999999999999999876554433445677899999999999 8999999999997543  7899999999999888731


Q ss_pred             Hc--CCCC--CCccccccCCCeEEEeecCCcceeE--------ecCc-----cccCccceeeeccccchhHHHHHcCCCC
Q 017664          303 MM--GRNK--GTMATYKPGYPIALVSLGRREGVAH--------FPFL-----TISGRIPGWIKSRDLFVGKTRKQLGLKP  365 (368)
Q Consensus       303 l~--g~~~--~~~~~~~~~~~~~~~~~g~~~~~~~--------~~~~-----~~~~~~~~~~k~~~~~~~~~~~~lG~~~  365 (368)
                      -.  -...  -+...| ..|+++.+|+.++++...        +.+.     ...+...+++|+  ++++++++|||+|+
T Consensus       317 ~~~~~~~~~~~p~~~~-~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl--i~d~~~~~ilG~~~  393 (438)
T PRK07251        317 GSYTLEDRGNVPTTMF-ITPPLSQVGLTEKEAKEAGLPYAVKELLVAAMPRAHVNNDLRGAFKV--VVNTETKEILGATL  393 (438)
T ss_pred             CCccccccCCCCEEEE-CCCceEeeeCCHHHHHhcCCCeEEEEEECCcchhhhhcCCCcEEEEE--EEECCCCEEEEEEE
Confidence            00  0000  001112 357899999887766532        1111     134455789999  99999999999986


Q ss_pred             C
Q 017664          366 T  366 (368)
Q Consensus       366 ~  366 (368)
                      .
T Consensus       394 ~  394 (438)
T PRK07251        394 F  394 (438)
T ss_pred             E
Confidence            3

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=3.5e-43  Score=336.00  Aligned_cols=341  Identities=26%  Similarity=0.324  Sum_probs=249.6

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeecccee------------------ee----ec---cccccc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLR------------------AV----VE---PSFAVR   68 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~------------------~~----~~---~~~~~~   68 (368)
                      +++|++||||||||++||.+|. .|.+|+|||+ +.+|+.+....                  ..    +.   .....+
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~~   80 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDFK   80 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCHH
Confidence            5699999999999999999997 4999999999 45554432100                  00    00   000000


Q ss_pred             ceee------------c-c--cccCceeEEEeEEEEeeccEEEecCCeEEEecEEEEecCCC-CCCCCch---HHHHHHH
Q 017664           69 SVIN------------H-G--DYLSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHV-ESVPKSR---TERLSQY  129 (368)
Q Consensus        69 ~~~~------------~-~--~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lvlAtG~~-~~~p~~~---~~~~~~~  129 (368)
                      .+..            . .  ....+++++.+.+..++++++.. ++.++.||+||+|||+. |.+|+..   ...+.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v-~~~~~~~d~lIiATGs~~p~ipg~~~~~~~~~~~~  159 (460)
T PRK06292         81 KVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEV-NGERIEAKNIVIATGSRVPPIPGVWLILGDRLLTS  159 (460)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEE-CcEEEEeCEEEEeCCCCCCCCCCCcccCCCcEECc
Confidence            0000            0 0  01125778888888888887766 67789999999999999 8888753   2223333


Q ss_pred             HHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecc
Q 017664          130 EKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNT  209 (368)
Q Consensus       130 ~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~  209 (368)
                      .........+++++|||+|++|+|+|..+.+  .+.+|+++++.+++++.+++++...+.+.++++ |++++++.+.+++
T Consensus       160 ~~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~  236 (460)
T PRK06292        160 DDAFELDKLPKSLAVIGGGVIGLELGQALSR--LGVKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVE  236 (460)
T ss_pred             hHHhCccccCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCEEEEEE
Confidence            3333223457999999999999999999885  588999999999999988999999999999999 9999999999987


Q ss_pred             cCCC-eEE--c--CCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccch
Q 017664          210 ISDG-LIE--T--SSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQ  284 (368)
Q Consensus       210 ~~~~-~v~--~--~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~  284 (368)
                      .+++ .+.  +  .+++++++|.+++++|.+|+.+.+....+++.++++|++.||+++|| +.|||||+|||++.+.  +
T Consensus       237 ~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~t-s~~~IyA~GD~~~~~~--~  313 (460)
T PRK06292        237 KSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQT-SVPGIYAAGDVNGKPP--L  313 (460)
T ss_pred             EcCCceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCccc-CCCCEEEEEecCCCcc--c
Confidence            6543 343  2  23357999999999999999886544444456788899999999999 8999999999997643  7


Q ss_pred             HHHHHHHHHHHHHHHHHH-HcCCCCCC--ccccccCCCeEEEeecCCcceeE--------ecCc-----cccCccceeee
Q 017664          285 GYLAQKHALVTAKNLKKL-MMGRNKGT--MATYKPGYPIALVSLGRREGVAH--------FPFL-----TISGRIPGWIK  348 (368)
Q Consensus       285 ~~~a~~~g~~aa~~i~~~-l~g~~~~~--~~~~~~~~~~~~~~~g~~~~~~~--------~~~~-----~~~~~~~~~~k  348 (368)
                      ++.|.+||+.||.||... ........  ...| ..|+++.+|+++++|...        +++.     .+.+...+++|
T Consensus       314 ~~~A~~qg~~aa~~i~~~~~~~~~~~~~p~~~~-~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k  392 (460)
T PRK06292        314 LHEAADEGRIAAENAAGDVAGGVRYHPIPSVVF-TDPQIASVGLTEEELKAAGIDYVVGEVPFEAQGRARVMGKNDGFVK  392 (460)
T ss_pred             hhHHHHHHHHHHHHhcCCCCCCcCCCCCCeEEE-CCCccEEeECCHHHHHhcCCCeEEEEEecccchHHHhcCCCCeEEE
Confidence            899999999999999742 10100011  1112 257889999988776432        1221     13455688999


Q ss_pred             ccccchhHHHHHcCCCCC
Q 017664          349 SRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       349 ~~~~~~~~~~~~lG~~~~  366 (368)
                      +  ++++++++|||+|+.
T Consensus       393 l--v~d~~~~~ilG~~~v  408 (460)
T PRK06292        393 V--YADKKTGRLLGAHII  408 (460)
T ss_pred             E--EEECCCCEEEEEEEE
Confidence            9  999999999999863

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=100.00  E-value=2.6e-42  Score=320.63  Aligned_cols=327  Identities=25%  Similarity=0.381  Sum_probs=248.5

Q ss_pred             cEEEECCChHHHHHHHHhh----cCCcEEEEcCCCceeeeccceeeeeccccc-ccceeeccccc--CceeEEEeEEEEe
Q 017664           18 KVVVIGGGVGGSLLAYHIQ----SFADVVLIDEKEYFEITWASLRAVVEPSFA-VRSVINHGDYL--SNVKIVVSTAVSI   90 (368)
Q Consensus        18 ~vvIIGaG~aGl~aA~~L~----~g~~v~lie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~   90 (368)
                      +|||||||+||+.+|.+|+    ++.+|+|||+++.+.+... +......... .+...+..+++  .+++++.+.+..+
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~v~~i   79 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGM-LPGMIAGHYSLDEIRIDLRRLARQAGARFVIAEATGI   79 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccch-hhHHHheeCCHHHhcccHHHHHHhcCCEEEEEEEEEE
Confidence            5899999999999999985    3789999999998665432 2221111111 12222333332  2788999999999


Q ss_pred             ec--cEEEecCCeEEEecEEEEecCCCCCCCCchH--------HHHHHHHH----HHHHH---hcCCeEEEEcCchhHHH
Q 017664           91 TD--TEVVTAGGQTFVYDYVVVATGHVESVPKSRT--------ERLSQYEK----DFEKV---KSANSVLIVGGGPTGVE  153 (368)
Q Consensus        91 ~~--~~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~--------~~~~~~~~----~~~~~---~~~~~v~VvG~g~~~~e  153 (368)
                      |+  +.|.+.++++++||+||||||+.|..|++++        ..+.++..    ..+..   ...++++|+|+|++|+|
T Consensus        80 d~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E  159 (364)
T TIGR03169        80 DPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVE  159 (364)
T ss_pred             ecccCEEEECCCCcccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHH
Confidence            85  4788888888999999999999976655432        11122222    22222   23579999999999999


Q ss_pred             HHHHHhhhCC----CCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCCcEEecCEEE
Q 017664          154 LAGEIAVDFP----DKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHF  229 (368)
Q Consensus       154 ~a~~l~~~~~----~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~vi  229 (368)
                      +|..|.+.++    ..+|+++ ..+.+++.+++.+...+.+.+++.||++++++.+.+++.  +.+.+.+|+++++|.+|
T Consensus       160 ~A~~l~~~~~~~g~~~~V~li-~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~v~~~~g~~i~~D~vi  236 (364)
T TIGR03169       160 IALALRRRLPKRGLRGQVTLI-AGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPD--GALILADGRTLPADAIL  236 (364)
T ss_pred             HHHHHHHHHHhcCCCceEEEE-eCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcC--CeEEeCCCCEEecCEEE
Confidence            9999975322    2589999 566777778888899999999999999999999987753  37888889999999999


Q ss_pred             EccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCC---CccchHHHHHHHHHHHHHHHHHHHcCC
Q 017664          230 MCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDI---PEIKQGYLAQKHALVTAKNLKKLMMGR  306 (368)
Q Consensus       230 ~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~---~~~~~~~~a~~~g~~aa~~i~~~l~g~  306 (368)
                      +++|.+|+. ++...++  ..+++|++.||+++|++++|||||+|||+..   +.++.+..|.+||+.+|+||.+.+.|+
T Consensus       237 ~a~G~~p~~-~l~~~gl--~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l~g~  313 (364)
T TIGR03169       237 WATGARAPP-WLAESGL--PLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASLRGQ  313 (364)
T ss_pred             EccCCChhh-HHHHcCC--CcCCCCeEEECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHhcCC
Confidence            999999874 5555554  5677899999999999889999999999964   345678899999999999999999887


Q ss_pred             CCCCccccccC-CCeEEEeecCCcceeEecCccccCccceeeeccccchhH
Q 017664          307 NKGTMATYKPG-YPIALVSLGRREGVAHFPFLTISGRIPGWIKSRDLFVGK  356 (368)
Q Consensus       307 ~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~  356 (368)
                      +   +.+|.|. ...+++++|...++.....+.+.|.+.+++|.  .+++.
T Consensus       314 ~---~~~~~~~~~~~~~~~~G~~~~v~~~~~~~~~~~~~~~~k~--~~~~~  359 (364)
T TIGR03169       314 P---LRPFRPQRDYLQLLNTGDRRAVASWGWIIGPGRWLWRLKD--WIDRR  359 (364)
T ss_pred             C---CCCCcccccceeEEEcCCCcEEEeecceeecCccHHHHHH--HHhHH
Confidence            4   3467663 45788999999988877666788888888886  44443

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=6.4e-43  Score=333.29  Aligned_cols=342  Identities=20%  Similarity=0.241  Sum_probs=242.4

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccce---ee--------ee---c------------ccccc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASL---RA--------VV---E------------PSFAV   67 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~---~~--------~~---~------------~~~~~   67 (368)
                      +++||+||||||||++||.+++ +|.+|+|||+++.+|+.....   ..        ..   .            ..+..
T Consensus         2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~   81 (466)
T PRK06115          2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNL   81 (466)
T ss_pred             CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCH
Confidence            3589999999999999999997 599999999866666542110   00        00   0            00000


Q ss_pred             cceee------------ccccc--CceeEEEeEEEEeeccEEE--ecCC--eEEEecEEEEecCCCCC-CCCchH--HHH
Q 017664           68 RSVIN------------HGDYL--SNVKIVVSTAVSITDTEVV--TAGG--QTFVYDYVVVATGHVES-VPKSRT--ERL  126 (368)
Q Consensus        68 ~~~~~------------~~~~~--~~~~~~~~~~~~~~~~~v~--~~~g--~~~~~d~lvlAtG~~~~-~p~~~~--~~~  126 (368)
                      .....            ...++  .+++++.+.....+++++.  ..++  ..++||+||||||++|. +|+...  ..+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~ipg~~~~~~~~  161 (466)
T PRK06115         82 AQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTPLPGVTIDNQRI  161 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCCCCCCCCCCCeE
Confidence            00000            00011  2578888887666666543  3455  36999999999999974 455421  112


Q ss_pred             HHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceee
Q 017664          127 SQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVT  206 (368)
Q Consensus       127 ~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~  206 (368)
                      .+..........+++++|||+|++|+|+|..+.+  .+.+|+++++.+++++.+++++...+.+.|++.||++++++.+.
T Consensus       162 ~~~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~--~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~  239 (466)
T PRK06115        162 IDSTGALSLPEVPKHLVVIGAGVIGLELGSVWRR--LGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVT  239 (466)
T ss_pred             ECHHHHhCCccCCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEE
Confidence            2222222222357999999999999999998884  58899999999999999999999999999999999999999999


Q ss_pred             ecccCCC--eEEcC-----CCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCC
Q 017664          207 LNTISDG--LIETS-----SGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDI  279 (368)
Q Consensus       207 ~i~~~~~--~v~~~-----~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~  279 (368)
                      +++.+++  .+.+.     +++++++|.+++++|++|+.+.+.....++..+++| +.||+++|| +.|+|||+|||++.
T Consensus       240 ~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd~~~~T-s~~~IyA~GD~~~~  317 (466)
T PRK06115        240 GATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLANDHHRT-SVPGVWVIGDVTSG  317 (466)
T ss_pred             EEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEECCCeec-CCCCEEEeeecCCC
Confidence            9876543  33321     235799999999999999988654444444566666 678999998 89999999999986


Q ss_pred             CccchHHHHHHHHHHHHHHHHHHHcCCC--CCCccccccCCCeEEEeecCCccee--------EecCc-----cccCccc
Q 017664          280 PEIKQGYLAQKHALVTAKNLKKLMMGRN--KGTMATYKPGYPIALVSLGRREGVA--------HFPFL-----TISGRIP  344 (368)
Q Consensus       280 ~~~~~~~~a~~~g~~aa~~i~~~l~g~~--~~~~~~~~~~~~~~~~~~g~~~~~~--------~~~~~-----~~~~~~~  344 (368)
                      +.  +++.|.+||+.+|+||+......+  .-+...| ..|+++.+|+.+++|..        .+++.     .+.+...
T Consensus       318 ~~--la~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~-t~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~  394 (466)
T PRK06115        318 PM--LAHKAEDEAVACIERIAGKAGEVNYGLIPGVIY-TRPEVATVGKTEEQLKAEGRAYKVGKFPFTANSRAKINHETE  394 (466)
T ss_pred             cc--cHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEE-CCcccEEeeCCHHHHHHCCCCEEEEEEecccChhhHhcCCCc
Confidence            54  899999999999999973210000  0111122 25789999998876643        22222     1345567


Q ss_pred             eeeeccccchhHHHHHcCCCC
Q 017664          345 GWIKSRDLFVGKTRKQLGLKP  365 (368)
Q Consensus       345 ~~~k~~~~~~~~~~~~lG~~~  365 (368)
                      +++|+  ++++++++|||+|+
T Consensus       395 g~~kl--v~~~~~~~ilG~~~  413 (466)
T PRK06115        395 GFAKI--LADARTDEVLGVHM  413 (466)
T ss_pred             eEEEE--EEECCCCEEEEEEE
Confidence            89999  99999999999986

>PRK14727 putative mercuric reductase; Provisional

Probab=100.00  E-value=9.9e-43  Score=333.07  Aligned_cols=339  Identities=18%  Similarity=0.224  Sum_probs=248.0

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeecccee------------------ee----e---ccccccc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLR------------------AV----V---EPSFAVR   68 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~------------------~~----~---~~~~~~~   68 (368)
                      .++|++||||||||+++|..|++ |.+|+|+|+++.+|+.|....                  ..    +   .+.+...
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   94 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDRG   94 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccCHH
Confidence            46899999999999999999985 999999999877776542210                  00    0   0011000


Q ss_pred             ce--------ee-----ccccc---CceeEEEeEEEEeeccEE--EecCC--eEEEecEEEEecCCCCCCCCchHH---H
Q 017664           69 SV--------IN-----HGDYL---SNVKIVVSTAVSITDTEV--VTAGG--QTFVYDYVVVATGHVESVPKSRTE---R  125 (368)
Q Consensus        69 ~~--------~~-----~~~~~---~~~~~~~~~~~~~~~~~v--~~~~g--~~~~~d~lvlAtG~~~~~p~~~~~---~  125 (368)
                      .+        ..     +...+   .+++++++.+...+++++  .+.++  .+++||+||||||+.|..|++++.   .
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~~~~  174 (479)
T PRK14727         95 LLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIPGLMDTP  174 (479)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCCCCcCccc
Confidence            00        00     11111   267888999888888754  34455  369999999999999877765431   1


Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEeccee
Q 017664          126 LSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSV  205 (368)
Q Consensus       126 ~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v  205 (368)
                      ..+..........+++++|||+|++|+|+|..+.+  .+.+|+++++. ++++.+++++...+.+.+++.||++++++.+
T Consensus       175 ~~~~~~~l~~~~~~k~vvVIGgG~iG~E~A~~l~~--~G~~Vtlv~~~-~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V  251 (479)
T PRK14727        175 YWTSTEALFSDELPASLTVIGSSVVAAEIAQAYAR--LGSRVTILARS-TLLFREDPLLGETLTACFEKEGIEVLNNTQA  251 (479)
T ss_pred             eecchHHhccccCCCeEEEECCCHHHHHHHHHHHH--cCCEEEEEEcC-CCCCcchHHHHHHHHHHHHhCCCEEEcCcEE
Confidence            11111211222346899999999999999999984  58899999875 6777888899999999999999999999999


Q ss_pred             eecccCCC--eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccc
Q 017664          206 TLNTISDG--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIK  283 (368)
Q Consensus       206 ~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~  283 (368)
                      ..++.+++  .+.+.++ ++++|.+|+++|+.|+.+++....+++.++++|++.||+++|| +.|||||+|||++.+.  
T Consensus       252 ~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~~~--  327 (479)
T PRK14727        252 SLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMET-SAPDIYAAGDCSDLPQ--  327 (479)
T ss_pred             EEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeec-CCCCEEEeeecCCcch--
Confidence            98876544  4455555 6999999999999999887654444557788899999999999 8999999999997654  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHcCCCCC---Cc--cccccCCCeEEEeecCCccee--------EecCcc-----ccCccce
Q 017664          284 QGYLAQKHALVTAKNLKKLMMGRNKG---TM--ATYKPGYPIALVSLGRREGVA--------HFPFLT-----ISGRIPG  345 (368)
Q Consensus       284 ~~~~a~~~g~~aa~~i~~~l~g~~~~---~~--~~~~~~~~~~~~~~g~~~~~~--------~~~~~~-----~~~~~~~  345 (368)
                      ..+.|..||+.||.||.    |.+..   ..  ......|+++.+|+++++|..        .+++..     ..+...+
T Consensus       328 ~~~~A~~~G~~aa~~i~----g~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g  403 (479)
T PRK14727        328 FVYVAAAAGSRAGINMT----GGNATLDLSAMPAVIFTDPQVATVGLSEAKAHLSGIETISRVLTMENVPRALANFETDG  403 (479)
T ss_pred             hhhHHHHHHHHHHHHHc----CCCcccccccCCcEEEecCceeeeeCCHHHHHHcCCceEEEEEEcccCchhhhcCCCCe
Confidence            67899999999999997    32211   00  111135889999998877742        222221     1234578


Q ss_pred             eeeccccchhHHHHHcCCCCC
Q 017664          346 WIKSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       346 ~~k~~~~~~~~~~~~lG~~~~  366 (368)
                      ++|+  ++++++++|||+|+.
T Consensus       404 ~~Kl--i~d~~~~~ilG~~~~  422 (479)
T PRK14727        404 FIKL--VAEEGTRKLIGAQIL  422 (479)
T ss_pred             EEEE--EEECCCCEEEEEEEE
Confidence            9999  999999999999863

>PRK14694 putative mercuric reductase; Provisional

Probab=100.00  E-value=1.3e-42  Score=331.83  Aligned_cols=337  Identities=19%  Similarity=0.267  Sum_probs=244.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeecccee------------------e-----eec---cccc
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLR------------------A-----VVE---PSFA   66 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~------------------~-----~~~---~~~~   66 (368)
                      ..++||+||||||||++||.+|++ |.+|+|||++. +|+.|....                  .     .+.   +.+.
T Consensus         4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~-~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~   82 (468)
T PRK14694          4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT-IGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVD   82 (468)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc-cccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccC
Confidence            457999999999999999999985 99999999874 444321100                  0     000   0000


Q ss_pred             cccee--------e-----ccc---ccCceeEEEeEEEEeecc--EEEecCC--eEEEecEEEEecCCCCCCCCchH---
Q 017664           67 VRSVI--------N-----HGD---YLSNVKIVVSTAVSITDT--EVVTAGG--QTFVYDYVVVATGHVESVPKSRT---  123 (368)
Q Consensus        67 ~~~~~--------~-----~~~---~~~~~~~~~~~~~~~~~~--~v~~~~g--~~~~~d~lvlAtG~~~~~p~~~~---  123 (368)
                      ...+.        .     ...   ...+++++.+++..++++  .|.+.++  .+++||+||||||++|..|++++   
T Consensus        83 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~~  162 (468)
T PRK14694         83 RSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVPGLAE  162 (468)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCCCCCCCC
Confidence            00000        0     001   112688999999999876  4555565  47999999999999977665442   


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecc
Q 017664          124 ERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQ  203 (368)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~  203 (368)
                      ..+.+..........+++++|||+|++|+|+|..|.+  .+.+|+++++ +++++..++++...+.+.+++.||++++++
T Consensus       163 ~~~~~~~~~~~l~~~~~~vvViG~G~~G~E~A~~l~~--~g~~Vtlv~~-~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~  239 (468)
T PRK14694        163 TPYLTSTSALELDHIPERLLVIGASVVALELAQAFAR--LGSRVTVLAR-SRVLSQEDPAVGEAIEAAFRREGIEVLKQT  239 (468)
T ss_pred             CceEcchhhhchhcCCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEC-CCCCCCCCHHHHHHHHHHHHhCCCEEEeCC
Confidence            1122222222222347899999999999999999885  5889999987 467777888999999999999999999999


Q ss_pred             eeeecccCCC--eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCc
Q 017664          204 SVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPE  281 (368)
Q Consensus       204 ~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~  281 (368)
                      .+.+++.+++  .+.++++ ++++|.+|+++|.+|+.+++....+++.. .+|++.||+++|| +.|||||+|||++.+.
T Consensus       240 ~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~G~i~vd~~~~T-s~~~IyA~GD~~~~~~  316 (468)
T PRK14694        240 QASEVDYNGREFILETNAG-TLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRIDEHLQT-TVSGIYAAGDCTDQPQ  316 (468)
T ss_pred             EEEEEEEcCCEEEEEECCC-EEEeCEEEEccCCCCCcCCCCchhcCccc-CCCeEeeCCCccc-CCCCEEEEeecCCCcc
Confidence            9998876655  3444444 69999999999999999876544444454 5789999999999 8999999999997654


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHcCCCCC------CccccccCCCeEEEeecCCcceeE--------ecCcc----c-cCc
Q 017664          282 IKQGYLAQKHALVTAKNLKKLMMGRNKG------TMATYKPGYPIALVSLGRREGVAH--------FPFLT----I-SGR  342 (368)
Q Consensus       282 ~~~~~~a~~~g~~aa~~i~~~l~g~~~~------~~~~~~~~~~~~~~~~g~~~~~~~--------~~~~~----~-~~~  342 (368)
                        ..+.|..||+.||.||.    |.+..      +...| ..|+++.+|+++++|...        +++..    + .+.
T Consensus       317 --~~~~A~~~G~~aa~~i~----~~~~~~~~~~~p~~~~-~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~  389 (468)
T PRK14694        317 --FVYVAAAGGSRAAINMT----GGDASLDLSAMPEVIF-TDPQVATVGLSEAEAQAQGYDTDSRTLDLENVPRALVNFD  389 (468)
T ss_pred             --cHHHHHHHHHHHHHHhc----CCCcccccCCCCeEEE-CCCCeEEeeCCHHHHHHcCCceEEEEEecccchhhhhcCC
Confidence              67899999999999997    33211      11122 257899999988776532        22221    1 334


Q ss_pred             cceeeeccccchhHHHHHcCCCCC
Q 017664          343 IPGWIKSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       343 ~~~~~k~~~~~~~~~~~~lG~~~~  366 (368)
                      ..+++|+  ++++++++|||+|+.
T Consensus       390 ~~g~~kl--v~~~~~~~ilG~~~~  411 (468)
T PRK14694        390 TGGFIKM--VAERGSGRLLGVQVV  411 (468)
T ss_pred             CceEEEE--EEECCCCEEEEEEEE
Confidence            5789999  999999999999863

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=100.00  E-value=5.1e-42  Score=326.82  Aligned_cols=337  Identities=20%  Similarity=0.257  Sum_probs=243.5

Q ss_pred             cEEEECCChHHHHHHHHhhc---CCcEEEEcCCCceeeeccceeeeecccccc--cceeeccccc--CceeEE-EeEEEE
Q 017664           18 KVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYFEITWASLRAVVEPSFAV--RSVINHGDYL--SNVKIV-VSTAVS   89 (368)
Q Consensus        18 ~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~-~~~~~~   89 (368)
                      +|||||||+||+++|..|++   +.+|+|||+++.+++....+.......+..  .......+.+  .+++++ ...+..
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~   81 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVVK   81 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEEE
Confidence            79999999999999999874   569999999998876544443333221111  1111111111  267765 457777


Q ss_pred             eec--cEEEecC---CeEEE--ecEEEEecCCCCCCCCchH---HH------HHHHHHHHHHH--hcCCeEEEEcCchhH
Q 017664           90 ITD--TEVVTAG---GQTFV--YDYVVVATGHVESVPKSRT---ER------LSQYEKDFEKV--KSANSVLIVGGGPTG  151 (368)
Q Consensus        90 ~~~--~~v~~~~---g~~~~--~d~lvlAtG~~~~~p~~~~---~~------~~~~~~~~~~~--~~~~~v~VvG~g~~~  151 (368)
                      +++  +.+.+.+   +..+.  ||+||+|||++|..|++++   ++      +.+.....+.+  ..+++++|+|+|++|
T Consensus        82 id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g  161 (444)
T PRK09564         82 VDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIG  161 (444)
T ss_pred             EECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHH
Confidence            764  4565543   55666  9999999999976554321   11      22222222222  246899999999999


Q ss_pred             HHHHHHHhhhCCCCeEEEEecCccccc-ccCchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEE
Q 017664          152 VELAGEIAVDFPDKKVILVHRGPKLLE-FVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCH  228 (368)
Q Consensus       152 ~e~a~~l~~~~~~~~v~~i~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~v  228 (368)
                      +|+|..+.+  .+.+|+++++.+++++ .+++++.+.+.+.+++.||++++++++.+++.++.  .+.+++ .++++|.+
T Consensus       162 ~e~A~~l~~--~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~-~~i~~d~v  238 (444)
T PRK09564        162 LEAVEAAKH--LGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDK-GEYEADVV  238 (444)
T ss_pred             HHHHHHHHh--cCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCC-CEEEcCEE
Confidence            999999874  5889999999988776 57889999999999999999999999998865443  344444 47999999


Q ss_pred             EEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCc--------cchHHHHHHHHHHHHHHHH
Q 017664          229 FMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPE--------IKQGYLAQKHALVTAKNLK  300 (368)
Q Consensus       229 i~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~--------~~~~~~a~~~g~~aa~~i~  300 (368)
                      ++|+|..|+.+++...++  .++++|++.||+++|| +.|||||+|||+..+.        +++++.|.+||+.+|+||.
T Consensus       239 i~a~G~~p~~~~l~~~gl--~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~  315 (444)
T PRK09564        239 IVATGVKPNTEFLEDTGL--KTLKNGAIIVDEYGET-SIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLA  315 (444)
T ss_pred             EECcCCCcCHHHHHhcCc--cccCCCCEEECCCccc-CCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhc
Confidence            999999999999887766  5677899999999998 8999999999997531        3578899999999999997


Q ss_pred             HHHcCCCCCC---cccc---ccCCCeEEEeecCCcceeE--------ecCc----cccCccceeeeccccchhHHHHHcC
Q 017664          301 KLMMGRNKGT---MATY---KPGYPIALVSLGRREGVAH--------FPFL----TISGRIPGWIKSRDLFVGKTRKQLG  362 (368)
Q Consensus       301 ~~l~g~~~~~---~~~~---~~~~~~~~~~~g~~~~~~~--------~~~~----~~~~~~~~~~k~~~~~~~~~~~~lG  362 (368)
                          |.+...   ...+   ...++++.+|+.++++...        +...    ...+...+++|+  ++++++++|||
T Consensus       316 ----g~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~kl--v~~~~~~~ilG  389 (444)
T PRK09564        316 ----GRHVSFKGTLGSACIKVLDLEAARTGLTEEEAKKLGIDYKTVFIKDKNHTNYYPGQEDLYVKL--IYEADTKVILG  389 (444)
T ss_pred             ----CCCCCCCCcccceEEEECCEEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEE--EEECCCCeEEe
Confidence                432211   0010   1246788888887766321        1111    124555789998  99999999999


Q ss_pred             CCCC
Q 017664          363 LKPT  366 (368)
Q Consensus       363 ~~~~  366 (368)
                      +|+.
T Consensus       390 ~~~~  393 (444)
T PRK09564        390 GQII  393 (444)
T ss_pred             EEEE
Confidence            9863

>PTZ00058 glutathione reductase; Provisional

Probab=100.00  E-value=1.6e-42  Score=332.96  Aligned_cols=342  Identities=20%  Similarity=0.270  Sum_probs=246.5

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeec---cceee-------------------eec--ccccccc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITW---ASLRA-------------------VVE--PSFAVRS   69 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~---~~~~~-------------------~~~--~~~~~~~   69 (368)
                      .++|++||||||||++||..+++ |.+|+|||++. +|+..   +.+..                   .+.  ..+....
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~-~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~~  125 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY-LGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLPL  125 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc-ccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHHH
Confidence            46899999999999999999985 99999999874 44321   11100                   000  0000000


Q ss_pred             eee------------ccccc--CceeEEEeEEEEeeccEEE----------------------------ecCCeEEEecE
Q 017664           70 VIN------------HGDYL--SNVKIVVSTAVSITDTEVV----------------------------TAGGQTFVYDY  107 (368)
Q Consensus        70 ~~~------------~~~~~--~~~~~~~~~~~~~~~~~v~----------------------------~~~g~~~~~d~  107 (368)
                      +..            ..+.+  .+++++.+.....++++|.                            ..++..++||+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i~ad~  205 (561)
T PTZ00058        126 LVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGKN  205 (561)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcEEECCE
Confidence            000            00111  2678899998888877653                            23567899999


Q ss_pred             EEEecCCCCCCCCchHHH-HHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHH
Q 017664          108 VVVATGHVESVPKSRTER-LSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQ  186 (368)
Q Consensus       108 lvlAtG~~~~~p~~~~~~-~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~  186 (368)
                      ||||||+.|..|++++.. ..+...... +..+++++|||+|++|+|+|..+.+  .+.+|+++++++++++.+++++.+
T Consensus       206 lVIATGS~P~~P~IpG~~~v~ts~~~~~-l~~pk~VvIIGgG~iGlE~A~~l~~--~G~~Vtli~~~~~il~~~d~~i~~  282 (561)
T PTZ00058        206 ILIAVGNKPIFPDVKGKEFTISSDDFFK-IKEAKRIGIAGSGYIAVELINVVNR--LGAESYIFARGNRLLRKFDETIIN  282 (561)
T ss_pred             EEEecCCCCCCCCCCCceeEEEHHHHhh-ccCCCEEEEECCcHHHHHHHHHHHH--cCCcEEEEEecccccccCCHHHHH
Confidence            999999998877765321 222222222 2238999999999999999999884  589999999999999999999999


Q ss_pred             HHHHHHHcCCcEEEecceeeecccCCC---eEEcCC-CcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCe
Q 017664          187 IALDWLTSKKVEVILNQSVTLNTISDG---LIETSS-GETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENL  262 (368)
Q Consensus       187 ~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~-g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~  262 (368)
                      .+.+.+++.||++++++.+.+++.+++   .+...+ ++++++|.+++++|++|+.+++...+++.. +++|+|.||+++
T Consensus       283 ~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~-~~~G~I~VDe~l  361 (561)
T PTZ00058        283 ELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIK-TPKGYIKVDDNQ  361 (561)
T ss_pred             HHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCcccccee-cCCCeEEECcCC
Confidence            999999999999999999998876532   333333 457999999999999999988876655433 467999999999


Q ss_pred             eecCCCCeEEecccCCCC--------------------------------ccchHHHHHHHHHHHHHHHHHHHcCCC-CC
Q 017664          263 RVRGFKNVFAIGDITDIP--------------------------------EIKQGYLAQKHALVTAKNLKKLMMGRN-KG  309 (368)
Q Consensus       263 ~~~~~~~ifa~GD~~~~~--------------------------------~~~~~~~a~~~g~~aa~~i~~~l~g~~-~~  309 (368)
                      || +.|||||+|||++.+                                .+.+++.|.+||+++|+||........ ..
T Consensus       362 qT-s~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~~~~~~~~~  440 (561)
T PTZ00058        362 RT-SVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGPFSRTTNYK  440 (561)
T ss_pred             cc-CCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCCCCcccCCC
Confidence            98 899999999999832                                245789999999999999973100000 00


Q ss_pred             --CccccccCCCeEEEeecCCcceeEe----------cCcc-----c----cCccceeeeccccchhHHHHHcCCCC
Q 017664          310 --TMATYKPGYPIALVSLGRREGVAHF----------PFLT-----I----SGRIPGWIKSRDLFVGKTRKQLGLKP  365 (368)
Q Consensus       310 --~~~~~~~~~~~~~~~~g~~~~~~~~----------~~~~-----~----~~~~~~~~k~~~~~~~~~~~~lG~~~  365 (368)
                        +...| ..|+++.+|+++.+|....          .+..     .    .+...+++|+  ++++++++|||+|+
T Consensus       441 ~ip~~vf-t~peiA~vGlte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kl--i~~~~t~~ILG~~i  514 (561)
T PTZ00058        441 LIPSVIF-SHPPIGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKL--VCVGKEELIKGLHI  514 (561)
T ss_pred             CCCeEEe-CCchheeeeCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEEEE--EEECCCCEEEEEEE
Confidence              01122 2478999999887776321          1110     0    1234689998  99999999999986

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=100.00  E-value=9.6e-43  Score=332.06  Aligned_cols=339  Identities=20%  Similarity=0.256  Sum_probs=246.6

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeec---cceee-------------------eec------cccc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITW---ASLRA-------------------VVE------PSFA   66 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~---~~~~~-------------------~~~------~~~~   66 (368)
                      ++|++||||||+|+.+|..++ +|.+|+|||++. +|+..   ..+..                   .+.      ..+.
T Consensus         1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   79 (466)
T PRK07845          1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVD   79 (466)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccC
Confidence            358999999999999999997 499999999876 44321   11000                   000      0000


Q ss_pred             cccee------------eccccc--CceeEEEeEEEE----eeccEE--EecCCe--EEEecEEEEecCCCCCCCCch--
Q 017664           67 VRSVI------------NHGDYL--SNVKIVVSTAVS----ITDTEV--VTAGGQ--TFVYDYVVVATGHVESVPKSR--  122 (368)
Q Consensus        67 ~~~~~------------~~~~~~--~~~~~~~~~~~~----~~~~~v--~~~~g~--~~~~d~lvlAtG~~~~~p~~~--  122 (368)
                      ...+.            ...+.+  .+++++.+++..    ++++++  .+.+|.  .+.||+||||||+.|..|+..  
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~~~~  159 (466)
T PRK07845         80 LPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTAEP  159 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCCCCC
Confidence            00000            000111  268999998888    556644  344564  699999999999998755421  


Q ss_pred             -HHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEe
Q 017664          123 -TERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVIL  201 (368)
Q Consensus       123 -~~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~  201 (368)
                       ...+.+..........+++++|||+|++|+|+|..|.+  .+.+|+++++.+++++.+++++...+.+.|+++||++++
T Consensus       160 ~~~~v~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~--~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~  237 (466)
T PRK07845        160 DGERILTWRQLYDLDELPEHLIVVGSGVTGAEFASAYTE--LGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLK  237 (466)
T ss_pred             CCceEEeehhhhcccccCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEc
Confidence             12222333322222346899999999999999999884  589999999999999988999999999999999999999


Q ss_pred             cceeeecccCCC--eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCC
Q 017664          202 NQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDI  279 (368)
Q Consensus       202 ~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~  279 (368)
                      ++.+.+++.+++  .+.+.+|+++++|.+++++|++|+.+.+....+++.++++|++.||+++|| +.|||||+|||++.
T Consensus       238 ~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~  316 (466)
T PRK07845        238 RSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRT-SVPGIYAAGDCTGV  316 (466)
T ss_pred             CCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCccc-CCCCEEEEeeccCC
Confidence            999998875544  566678889999999999999999886433334447788899999999998 89999999999976


Q ss_pred             CccchHHHHHHHHHHHHHHHHHHHcCCCCCCc-ccccc-----CCCeEEEeecCCccee--------EecCc-----ccc
Q 017664          280 PEIKQGYLAQKHALVTAKNLKKLMMGRNKGTM-ATYKP-----GYPIALVSLGRREGVA--------HFPFL-----TIS  340 (368)
Q Consensus       280 ~~~~~~~~a~~~g~~aa~~i~~~l~g~~~~~~-~~~~~-----~~~~~~~~~g~~~~~~--------~~~~~-----~~~  340 (368)
                      +  ++++.|.+||+.|+.||+    |.+..+. ....|     .|+++.+|+++++|..        .+++.     .+.
T Consensus       317 ~--~l~~~A~~~g~~aa~~i~----g~~~~~~~~~~~p~~vf~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~  390 (466)
T PRK07845        317 L--PLASVAAMQGRIAMYHAL----GEAVSPLRLKTVASNVFTRPEIATVGVSQAAIDSGEVPARTVMLPLATNPRAKMS  390 (466)
T ss_pred             c--cchhHHHHHHHHHHHHHc----CCCCCcCCCCCCCEEEeCCCcceeecCCHHHHHhCCCceEEEEEecccCchhhhc
Confidence            4  378999999999999997    3221111 11111     4788999998765542        11221     135


Q ss_pred             CccceeeeccccchhHHHHHcCCCCC
Q 017664          341 GRIPGWIKSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       341 ~~~~~~~k~~~~~~~~~~~~lG~~~~  366 (368)
                      +...+++|+  ++++++++|||+|+.
T Consensus       391 ~~~~g~~kl--i~d~~~~~ilG~~~~  414 (466)
T PRK07845        391 GLRDGFVKL--FCRPGTGVVIGGVVV  414 (466)
T ss_pred             CCCceEEEE--EEECCCCEEEEEEEE
Confidence            566799999  999999999999863

>PRK13748 putative mercuric reductase; Provisional

Probab=100.00  E-value=3e-42  Score=337.30  Aligned_cols=337  Identities=19%  Similarity=0.273  Sum_probs=244.9

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccce---e-----------------e---ee---cccccc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASL---R-----------------A---VV---EPSFAV   67 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~---~-----------------~---~~---~~~~~~   67 (368)
                      ..+|++||||||||++||.+|++ |.+|+|||++ .+|+.+...   .                 .   .+   .+.+..
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  175 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR  175 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCH
Confidence            46999999999999999999985 9999999997 566543110   0                 0   00   001111


Q ss_pred             cceee-------------ccccc---CceeEEEeEEEEeeccEEE--ecCC--eEEEecEEEEecCCCCCCCCchHH---
Q 017664           68 RSVIN-------------HGDYL---SNVKIVVSTAVSITDTEVV--TAGG--QTFVYDYVVVATGHVESVPKSRTE---  124 (368)
Q Consensus        68 ~~~~~-------------~~~~~---~~~~~~~~~~~~~~~~~v~--~~~g--~~~~~d~lvlAtG~~~~~p~~~~~---  124 (368)
                      +.+..             ....+   .+++++++++..++++.+.  +.++  ..++||+||||||+.|..|++++.   
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~~~  255 (561)
T PRK13748        176 SRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLKET  255 (561)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCcc
Confidence            10000             00111   2688999999999887543  3455  369999999999999877765431   


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecce
Q 017664          125 RLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQS  204 (368)
Q Consensus       125 ~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~  204 (368)
                      .+.+..........+++++|||+|++|+|+|..+.+  .+.+|+++++. .+++.+++++...+.+.+++.||++++++.
T Consensus       256 ~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~--~g~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~  332 (561)
T PRK13748        256 PYWTSTEALVSDTIPERLAVIGSSVVALELAQAFAR--LGSKVTILARS-TLFFREDPAIGEAVTAAFRAEGIEVLEHTQ  332 (561)
T ss_pred             ceEccHHHhhcccCCCeEEEECCCHHHHHHHHHHHH--cCCEEEEEecC-ccccccCHHHHHHHHHHHHHCCCEEEcCCE
Confidence            122222222222347899999999999999999985  58899999985 466678889999999999999999999999


Q ss_pred             eeecccCCC--eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCcc
Q 017664          205 VTLNTISDG--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEI  282 (368)
Q Consensus       205 v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~  282 (368)
                      +.+++.+++  .+.+.++ ++++|.+|+++|++|+.+++.....++.++++|+|.||+++|| +.|||||+|||++.+. 
T Consensus       333 v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~~~IyA~GD~~~~~~-  409 (561)
T PRK13748        333 ASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRT-SVPHIYAAGDCTDQPQ-  409 (561)
T ss_pred             EEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCccc-CCCCEEEeeecCCCcc-
Confidence            998876555  3444555 6999999999999999987544444457788899999999999 8999999999998654 


Q ss_pred             chHHHHHHHHHHHHHHHHHHHcCCCCC------CccccccCCCeEEEeecCCcceeE--------ecCcc----c-cCcc
Q 017664          283 KQGYLAQKHALVTAKNLKKLMMGRNKG------TMATYKPGYPIALVSLGRREGVAH--------FPFLT----I-SGRI  343 (368)
Q Consensus       283 ~~~~~a~~~g~~aa~~i~~~l~g~~~~------~~~~~~~~~~~~~~~~g~~~~~~~--------~~~~~----~-~~~~  343 (368)
                       +.+.|..||+.||.||.    |.+..      +...| ..|+++.+|+++.+|...        +++..    + .+..
T Consensus       410 -~~~~A~~~g~~aa~~i~----g~~~~~~~~~~p~~~~-~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~  483 (561)
T PRK13748        410 -FVYVAAAAGTRAAINMT----GGDAALDLTAMPAVVF-TDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDT  483 (561)
T ss_pred             -chhHHHHHHHHHHHHHc----CCCcccCCCCCCeEEE-ccCCceeeeCCHHHHHHcCCCeEEEEEecccCchhhhcCCC
Confidence             78899999999999997    33211      01111 257899999988765432        22221    1 2345


Q ss_pred             ceeeeccccchhHHHHHcCCCCC
Q 017664          344 PGWIKSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       344 ~~~~k~~~~~~~~~~~~lG~~~~  366 (368)
                      .+++|+  ++++++++|||+|+.
T Consensus       484 ~g~~kl--i~d~~~~~ilG~~~~  504 (561)
T PRK13748        484 RGFIKL--VIEEGSGRLIGVQAV  504 (561)
T ss_pred             CeEEEE--EEECCCCEEEEEEEE
Confidence            789999  999999999999863

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=3.7e-42  Score=329.02  Aligned_cols=342  Identities=20%  Similarity=0.275  Sum_probs=247.4

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcC------CCceeeeccceee------------------e---eccc
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDE------KEYFEITWASLRA------------------V---VEPS   64 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~------~~~~~~~~~~~~~------------------~---~~~~   64 (368)
                      |.+.+|++||||||||++||.++++ |.+|+|||+      ...+|+.+.....                  .   .+..
T Consensus         1 ~~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~   80 (475)
T PRK06327          1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIH   80 (475)
T ss_pred             CCcceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCcc
Confidence            3457999999999999999999985 999999998      2334432211000                  0   0000


Q ss_pred             -----ccccceee------------cccc--cCceeEEEeEEEEee----ccEEEec--CCeEEEecEEEEecCCCCCC-
Q 017664           65 -----FAVRSVIN------------HGDY--LSNVKIVVSTAVSIT----DTEVVTA--GGQTFVYDYVVVATGHVESV-  118 (368)
Q Consensus        65 -----~~~~~~~~------------~~~~--~~~~~~~~~~~~~~~----~~~v~~~--~g~~~~~d~lvlAtG~~~~~-  118 (368)
                           +....+..            ..++  ..+++++.+++..++    ..++...  ++..++||+||||||+.|.. 
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~~~  160 (475)
T PRK06327         81 VDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHL  160 (475)
T ss_pred             CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCCCC
Confidence                 00000000            0001  136788999888887    5566653  34689999999999999853 


Q ss_pred             CCch--HHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCC
Q 017664          119 PKSR--TERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKK  196 (368)
Q Consensus       119 p~~~--~~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~g  196 (368)
                      |+.+  ...+.+..........+++++|||+|++|+|+|..+.+  .+.+|+++++.+++++..++++...+.+.++++|
T Consensus       161 p~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~g  238 (475)
T PRK06327        161 PGVPFDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRR--LGAEVTILEALPAFLAAADEQVAKEAAKAFTKQG  238 (475)
T ss_pred             CCCCCCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcC
Confidence            4332  22222223222222357999999999999999998885  5889999999999988888999999999999999


Q ss_pred             cEEEecceeeecccCCC--eEEcCC--C--cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCe
Q 017664          197 VEVILNQSVTLNTISDG--LIETSS--G--ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNV  270 (368)
Q Consensus       197 v~i~~~~~v~~i~~~~~--~v~~~~--g--~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~i  270 (368)
                      |++++++.|.+++.+++  .+.+.+  |  +++++|.+++++|++|+.+++....+++.++++|++.||+++|| +.|+|
T Consensus       239 i~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~T-s~~~V  317 (475)
T PRK06327        239 LDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRT-NVPNV  317 (475)
T ss_pred             cEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCcc-CCCCE
Confidence            99999999999886654  344433  3  47999999999999999886554445557788899999999998 79999


Q ss_pred             EEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCC------CccccccCCCeEEEeecCCcceeE--------ecC
Q 017664          271 FAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKG------TMATYKPGYPIALVSLGRREGVAH--------FPF  336 (368)
Q Consensus       271 fa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~~------~~~~~~~~~~~~~~~~g~~~~~~~--------~~~  336 (368)
                      ||+|||+..+.  +++.|.+||+.||+||.    |+...      +...| ..|+++.+|+.++++...        +++
T Consensus       318 yA~GD~~~~~~--~~~~A~~~G~~aa~~i~----g~~~~~~~~~~p~~~~-~~pe~a~vGlte~~a~~~g~~~~~~~~~~  390 (475)
T PRK06327        318 YAIGDVVRGPM--LAHKAEEEGVAVAERIA----GQKGHIDYNTIPWVIY-TSPEIAWVGKTEQQLKAEGVEYKAGKFPF  390 (475)
T ss_pred             EEEEeccCCcc--hHHHHHHHHHHHHHHHc----CCCCCCCCCCCCeEEe-CCcceEEEeCCHHHHHHcCCCEEEEEEcc
Confidence            99999997543  78999999999999997    32211      11112 257899999988776432        222


Q ss_pred             c-----cccCccceeeeccccchhHHHHHcCCCCC
Q 017664          337 L-----TISGRIPGWIKSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       337 ~-----~~~~~~~~~~k~~~~~~~~~~~~lG~~~~  366 (368)
                      .     .+.+...+++|+  ++++++++|||+|+.
T Consensus       391 ~~~~~~~~~~~~~g~~kl--v~d~~~~~ilG~~~~  423 (475)
T PRK06327        391 MANGRALAMGEPDGFVKI--IADAKTDEILGVHVI  423 (475)
T ss_pred             cccchhhhcCCCCeEEEE--EEECCCCEEEEEEEE
Confidence            1     124556799999  999999999999863

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=5.5e-42  Score=328.05  Aligned_cols=341  Identities=20%  Similarity=0.285  Sum_probs=244.6

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccce---ee-------------------eec---cccc
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASL---RA-------------------VVE---PSFA   66 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~---~~-------------------~~~---~~~~   66 (368)
                      |.+.+|++||||||||++||.+|+ .|.+|+|||++ .+|+.+...   ..                   ...   ....
T Consensus         1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~   79 (472)
T PRK05976          1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALD   79 (472)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccC
Confidence            456899999999999999999998 49999999986 455433110   00                   000   0000


Q ss_pred             ccceee------------cccc--cCceeEEEeEEEEeecc-------E--EEecCC--eEEEecEEEEecCCCCCC-CC
Q 017664           67 VRSVIN------------HGDY--LSNVKIVVSTAVSITDT-------E--VVTAGG--QTFVYDYVVVATGHVESV-PK  120 (368)
Q Consensus        67 ~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~-------~--v~~~~g--~~~~~d~lvlAtG~~~~~-p~  120 (368)
                      ...+..            ..+.  ..+++++.+++..++++       +  +.+.+|  ..+.||+||||||+.|.. |+
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~p~  159 (472)
T PRK05976         80 FAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPG  159 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCCCC
Confidence            000000            0011  12689999999999876       4  444455  579999999999999854 43


Q ss_pred             chH--HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcE
Q 017664          121 SRT--ERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVE  198 (368)
Q Consensus       121 ~~~--~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~  198 (368)
                      .+.  ..+.+..........+++++|||+|++|+|+|..|.+  .+.+|+++++.+++++.+++++...+.+.++++||+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~~G~E~A~~l~~--~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~  237 (472)
T PRK05976        160 LPFDGEYVISSDEALSLETLPKSLVIVGGGVIGLEWASMLAD--FGVEVTVVEAADRILPTEDAELSKEVARLLKKLGVR  237 (472)
T ss_pred             CCCCCceEEcchHhhCccccCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCE
Confidence            321  1122222222222347899999999999999999985  589999999999999989999999999999999999


Q ss_pred             EEecceeeeccc--CCC--eEEcCCC--cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEE
Q 017664          199 VILNQSVTLNTI--SDG--LIETSSG--ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFA  272 (368)
Q Consensus       199 i~~~~~v~~i~~--~~~--~v~~~~g--~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa  272 (368)
                      +++++.+.+++.  +++  .+.+.+|  +++++|.+|+++|.+|+.+.+....+++.. .+|++.||+++|+ +.|||||
T Consensus       238 i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~g~i~Vd~~l~t-s~~~IyA  315 (472)
T PRK05976        238 VVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDV-EGGFIQIDDFCQT-KERHIYA  315 (472)
T ss_pred             EEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCcee-cCCEEEECCCccc-CCCCEEE
Confidence            999999998874  333  2334566  379999999999999998765444443333 4689999999998 7899999


Q ss_pred             ecccCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCc-cccc-----cCCCeEEEeecCCcceeE--------ecCc-
Q 017664          273 IGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTM-ATYK-----PGYPIALVSLGRREGVAH--------FPFL-  337 (368)
Q Consensus       273 ~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~~~~-~~~~-----~~~~~~~~~~g~~~~~~~--------~~~~-  337 (368)
                      +|||++.+  ++++.|.+||+.+|+||.    |.+..+. +...     ..|+++.+|+.++++...        .++. 
T Consensus       316 iGD~~~~~--~~~~~A~~~g~~aa~~i~----g~~~~~~~~~~~p~~~~~~p~~a~vG~te~~a~~~g~~~~~~~~~~~~  389 (472)
T PRK05976        316 IGDVIGEP--QLAHVAMAEGEMAAEHIA----GKKPRPFDYAAIPACCYTDPEVASVGLTEEEAKEAGYDVKVGKFPFAA  389 (472)
T ss_pred             eeecCCCc--ccHHHHHHHHHHHHHHHc----CCCCCCCCCCCCCEEEECcCceEEEeCCHHHHHHcCCCEEEEEEECCc
Confidence            99999754  478999999999999986    4321111 0111     257888888887665421        2221 


Q ss_pred             ----cccCccceeeeccccchhHHHHHcCCCCC
Q 017664          338 ----TISGRIPGWIKSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       338 ----~~~~~~~~~~k~~~~~~~~~~~~lG~~~~  366 (368)
                          .+.+...+++|+  ++++++++|||+|+.
T Consensus       390 ~~~~~~~~~~~g~~kl--i~d~~~~~ilG~~~~  420 (472)
T PRK05976        390 NGKALTYGESDGFVKV--VADRDTHDILGVQAV  420 (472)
T ss_pred             chhhhhcCCCceEEEE--EEECCCCEEEEEEEE
Confidence                134566889999  999999999999863

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=100.00  E-value=2.6e-41  Score=338.22  Aligned_cols=337  Identities=16%  Similarity=0.209  Sum_probs=247.5

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-----CCcEEEEcCCCceeeeccceeeeecccccccceeeccccc--CceeEEEe-EE
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-----FADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYL--SNVKIVVS-TA   87 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-----g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~   87 (368)
                      +++|||||+|+||+.+|..|++     +++|+||++++++.+....+.................+++  .+++++.+ .+
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V   82 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERA   82 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEE
Confidence            4589999999999999998852     5899999999998766655544333222222222222222  26788765 57


Q ss_pred             EEeecc--EEEecCCeEEEecEEEEecCCCCCCCCchH---------HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHH
Q 017664           88 VSITDT--EVVTAGGQTFVYDYVVVATGHVESVPKSRT---------ERLSQYEKDFEKVKSANSVLIVGGGPTGVELAG  156 (368)
Q Consensus        88 ~~~~~~--~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~---------~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~  156 (368)
                      ..+++.  .|.+.+|..++||+||||||+.|..|++++         ..+.+..........+++++|||+|++|+|+|.
T Consensus        83 ~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~  162 (847)
T PRK14989         83 ITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAG  162 (847)
T ss_pred             EEEeCCCcEEEECCCcEEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHH
Confidence            777754  677888888999999999999977665432         134444444444556899999999999999999


Q ss_pred             HHhhhCCCCeEEEEecCccccc-ccCchhHHHHHHHHHcCCcEEEecceeeecccCC--C--eEEcCCCcEEecCEEEEc
Q 017664          157 EIAVDFPDKKVILVHRGPKLLE-FVGSRASQIALDWLTSKKVEVILNQSVTLNTISD--G--LIETSSGETIDTDCHFMC  231 (368)
Q Consensus       157 ~l~~~~~~~~v~~i~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~--~--~v~~~~g~~i~~d~vi~a  231 (368)
                      .|.+  .+.+|+++++.+++++ .+++.....+.+.++++||++++++.+.++..++  .  .+.+.+|+++++|.+|++
T Consensus       163 ~L~~--~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A  240 (847)
T PRK14989        163 ALKN--LGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFS  240 (847)
T ss_pred             HHHH--cCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEEC
Confidence            9985  5889999999998887 5889999999999999999999999999886542  2  577889999999999999


Q ss_pred             cCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCcc--chHHHHHHHHHHHHHHHHHHHcCCCCC
Q 017664          232 TGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEI--KQGYLAQKHALVTAKNLKKLMMGRNKG  309 (368)
Q Consensus       232 ~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~--~~~~~a~~~g~~aa~~i~~~l~g~~~~  309 (368)
                      +|.+|+.+++...++  .++++|+|.||+++|| +.|||||+|||+..+..  .+...|.+||++||+||.    |.+. 
T Consensus       241 ~G~rPn~~L~~~~Gl--~~~~~G~I~VD~~l~T-s~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~----g~~~-  312 (847)
T PRK14989        241 TGIRPQDKLATQCGL--AVAPRGGIVINDSCQT-SDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLL----GSEN-  312 (847)
T ss_pred             CCcccCchHHhhcCc--cCCCCCcEEECCCCcC-CCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhc----CCCc-
Confidence            999999988776666  5678899999999999 89999999999987432  367889999999999997    5431 


Q ss_pred             CccccccCC------CeEEEeecCCcceeEe-cCcccc-CccceeeeccccchhHHHHHcCCCC
Q 017664          310 TMATYKPGY------PIALVSLGRREGVAHF-PFLTIS-GRIPGWIKSRDLFVGKTRKQLGLKP  365 (368)
Q Consensus       310 ~~~~~~~~~------~~~~~~~g~~~~~~~~-~~~~~~-~~~~~~~k~~~~~~~~~~~~lG~~~  365 (368)
                      . +.+...+      .+.+.++|.......- ....+. +...++.|+  ++++++++|||+|+
T Consensus       313 ~-~~g~~~~~~lk~~G~~v~s~G~~~~~~~~~~~~~~~~~~~~~y~Kl--v~~~~~~~LlGa~l  373 (847)
T PRK14989        313 A-FEGADLSAKLKLLGVDVGGIGDAHGRTPGARSYVYLDESKEIYKRL--IVSEDNKTLLGAVL  373 (847)
T ss_pred             C-CCCcccceEEEECCcceEecccccCCCCCceeEEEEcCCCCEEEEE--EEECCCCEEEEEEE
Confidence            1 1111111      1122233421111000 001122 223567888  99999999999986

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=100.00  E-value=2e-41  Score=324.06  Aligned_cols=340  Identities=24%  Similarity=0.345  Sum_probs=245.9

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccceeee--------------e----ccc-------ccccc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLRAV--------------V----EPS-------FAVRS   69 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~~~--------------~----~~~-------~~~~~   69 (368)
                      .+||+||||||||++||.+|++ |.+|+|||+ +.+|+.+......              .    ...       +....
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   79 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWEK   79 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHHH
Confidence            3899999999999999999984 999999999 6666543211000              0    000       00000


Q ss_pred             eeecc------------cc--cCceeEEEeEEEEeeccEEEec--CC-eEEEecEEEEecCCCCCCCCch----HHHHHH
Q 017664           70 VINHG------------DY--LSNVKIVVSTAVSITDTEVVTA--GG-QTFVYDYVVVATGHVESVPKSR----TERLSQ  128 (368)
Q Consensus        70 ~~~~~------------~~--~~~~~~~~~~~~~~~~~~v~~~--~g-~~~~~d~lvlAtG~~~~~p~~~----~~~~~~  128 (368)
                      +....            .+  ..+++++.+++..++++.+...  ++ ..++||+||+|||+.|..|+.+    ...+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~~~~~~~~~~~  159 (461)
T TIGR01350        80 MQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLPGPFDFDGEVVIT  159 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCCCCCCCceEEc
Confidence            00000            00  1257888888888887755443  33 5799999999999998766542    111333


Q ss_pred             HHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeec
Q 017664          129 YEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLN  208 (368)
Q Consensus       129 ~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  208 (368)
                      ..........+++++|||+|++|+|+|..+.+  .+.+|+++++.+++++.+++++...+.+.+++.||++++++.+.++
T Consensus       160 ~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i  237 (461)
T TIGR01350       160 STGALNLKEVPESLVIIGGGVIGIEFASIFAS--LGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAV  237 (461)
T ss_pred             chHHhccccCCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence            33333323357899999999999999999985  4889999999999999899999999999999999999999999988


Q ss_pred             ccCCC--eEEcCCC--cEEecCEEEEccCCCCCch--hhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCcc
Q 017664          209 TISDG--LIETSSG--ETIDTDCHFMCTGKAMASS--WLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEI  282 (368)
Q Consensus       209 ~~~~~--~v~~~~g--~~i~~d~vi~a~G~~p~~~--~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~  282 (368)
                      +.+++  .+.+.+|  +++++|.+|+|+|..|+.+  ++...+  +.++++|++.||+++|+ +.|+|||+|||++.+  
T Consensus       238 ~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~g--l~~~~~g~i~vd~~l~t-~~~~IyaiGD~~~~~--  312 (461)
T TIGR01350       238 EKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLG--VELDERGRIVVDEYMRT-NVPGIYAIGDVIGGP--  312 (461)
T ss_pred             EEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhC--ceECCCCcEeeCCCccc-CCCCEEEeeecCCCc--
Confidence            76655  4555566  5799999999999999987  344444  46788899999999999 799999999999754  


Q ss_pred             chHHHHHHHHHHHHHHHHHHHcCC---CCCCccccccCCCeEEEeecCCccee--------EecCc-----cccCcccee
Q 017664          283 KQGYLAQKHALVTAKNLKKLMMGR---NKGTMATYKPGYPIALVSLGRREGVA--------HFPFL-----TISGRIPGW  346 (368)
Q Consensus       283 ~~~~~a~~~g~~aa~~i~~~l~g~---~~~~~~~~~~~~~~~~~~~g~~~~~~--------~~~~~-----~~~~~~~~~  346 (368)
                      ++++.|.+||+.+|+||...-...   ...+...| ..|+++.+|+.++++..        ..++.     ...+...++
T Consensus       313 ~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~-~~~~~a~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~  391 (461)
T TIGR01350       313 MLAHVASHEGIVAAENIAGKEPAPIDYDAVPSCIY-TDPEVASVGLTEEQAKEAGYDVKIGKFPFAANGKALALGETDGF  391 (461)
T ss_pred             ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCeEEe-cCCceEEEeCCHHHHHhCCCCeEEEEEeCccchHHHhcCCCceE
Confidence            378999999999999997421100   00111112 25778888887776543        22221     123556789


Q ss_pred             eeccccchhHHHHHcCCCCC
Q 017664          347 IKSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       347 ~k~~~~~~~~~~~~lG~~~~  366 (368)
                      +|+  ++++++++|||+|+.
T Consensus       392 ~kl--~~~~~~~~ilG~~~~  409 (461)
T TIGR01350       392 VKI--IADKKTGEILGAHII  409 (461)
T ss_pred             EEE--EEECCCCEEEEEEEE
Confidence            999  999999999999863

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=5.4e-41  Score=319.82  Aligned_cols=335  Identities=21%  Similarity=0.270  Sum_probs=241.1

Q ss_pred             cEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeec---c-----ce-------------ee-ee-----cccccccc
Q 017664           18 KVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITW---A-----SL-------------RA-VV-----EPSFAVRS   69 (368)
Q Consensus        18 ~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~---~-----~~-------------~~-~~-----~~~~~~~~   69 (368)
                      +++||||||||++||.+|+ .|.+|+|||+++. |+..   .     .+             .. .+     ........
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~-GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~   80 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADL-GGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQ   80 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc-cccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHH
Confidence            8999999999999999997 4999999999763 3211   0     00             00 00     00001011


Q ss_pred             eeec------------ccc--cCceeEEEeEEEEeeccEEEe--cCC-eEEEecEEEEecCCCCCCCCch---HHHHHHH
Q 017664           70 VINH------------GDY--LSNVKIVVSTAVSITDTEVVT--AGG-QTFVYDYVVVATGHVESVPKSR---TERLSQY  129 (368)
Q Consensus        70 ~~~~------------~~~--~~~~~~~~~~~~~~~~~~v~~--~~g-~~~~~d~lvlAtG~~~~~p~~~---~~~~~~~  129 (368)
                      +..+            ...  ..+++++++++..++++++..  .++ ..++||+||||||++|..|++.   ...+.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p~~~~~~~~v~~~  160 (458)
T PRK06912         81 MQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPFAPFDGKWIINS  160 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCCCCCCCCCeEEcc
Confidence            1000            001  126889999999999886543  344 4799999999999998655432   2222233


Q ss_pred             HHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecc
Q 017664          130 EKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNT  209 (368)
Q Consensus       130 ~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~  209 (368)
                      .........+++++|||+|++|+|+|..+.+  .+.+|+++++.+++++..++++.+.+.+.+++.||++++++.+.+++
T Consensus       161 ~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~  238 (458)
T PRK06912        161 KHAMSLPSIPSSLLIVGGGVIGCEFASIYSR--LGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLN  238 (458)
T ss_pred             hHHhCccccCCcEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEE
Confidence            3333333347899999999999999998874  58899999999999998899999999999999999999999999887


Q ss_pred             cCCCeEEc-CCC--cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHH
Q 017664          210 ISDGLIET-SSG--ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGY  286 (368)
Q Consensus       210 ~~~~~v~~-~~g--~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~  286 (368)
                      .++..+.+ .+|  +++++|.+++|+|.+|+.+.+.....++..+++| +.||+++|| +.|||||+|||++.+  ++++
T Consensus       239 ~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~~~~t-s~~~VyA~GD~~~~~--~la~  314 (458)
T PRK06912        239 SYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHMQT-NVPHIYACGDVIGGI--QLAH  314 (458)
T ss_pred             EcCCEEEEEECCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCCCeec-CCCCEEEEeecCCCc--ccHH
Confidence            65543332 234  3799999999999999987654333344566666 999999998 799999999999753  4789


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCC----Cc--cccccCCCeEEEeecCCcceeE--------ecCcc-----ccCccceee
Q 017664          287 LAQKHALVTAKNLKKLMMGRNKG----TM--ATYKPGYPIALVSLGRREGVAH--------FPFLT-----ISGRIPGWI  347 (368)
Q Consensus       287 ~a~~~g~~aa~~i~~~l~g~~~~----~~--~~~~~~~~~~~~~~g~~~~~~~--------~~~~~-----~~~~~~~~~  347 (368)
                      .|.+||+.||.||.    |.+..    ..  ..| ..|+++.+|+++++|..+        +++..     ..+...+++
T Consensus       315 ~A~~~g~~aa~~~~----g~~~~~~~~~~p~~v~-~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~  389 (458)
T PRK06912        315 VAFHEGTTAALHAS----GEDVKVNYHAVPRCIY-TSPEIASVGLTEKQAREQYGDIRIGEFPFTANGKALIIGEQTGKV  389 (458)
T ss_pred             HHHHHHHHHHHHHc----CCCCCCCcCCCCeEEe-cCchhEEeeCCHHHHHHCCCCeEEEEEecCcchhHhhcCCCceEE
Confidence            99999999999986    33211    11  112 247889999988776432        12211     244567899


Q ss_pred             eccccchhHHHHHcCCCCC
Q 017664          348 KSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       348 k~~~~~~~~~~~~lG~~~~  366 (368)
                      |+  ++++++++|||+|+.
T Consensus       390 kl--i~d~~~~~ilG~~~~  406 (458)
T PRK06912        390 KV--IVEPKYQEIVGISII  406 (458)
T ss_pred             EE--EEECCCCEEEEEEEE
Confidence            99  999999999999863

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=100.00  E-value=3.1e-41  Score=328.06  Aligned_cols=280  Identities=21%  Similarity=0.307  Sum_probs=208.5

Q ss_pred             ceeEEEeEEEEeeccEEEe-cCCeEEEecEEEEecCCCCCCCCc---hHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHH
Q 017664           79 NVKIVVSTAVSITDTEVVT-AGGQTFVYDYVVVATGHVESVPKS---RTERLSQYEKDFEKVKSANSVLIVGGGPTGVEL  154 (368)
Q Consensus        79 ~~~~~~~~~~~~~~~~v~~-~~g~~~~~d~lvlAtG~~~~~p~~---~~~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~  154 (368)
                      +++++.+....++++++.. .+++.+.||+||||||+.|.+|+.   +...+.+..........+++++|||+|++|+|+
T Consensus       248 ~v~vi~G~a~f~~~~~v~v~~~g~~i~ad~lIIATGS~P~~P~~~~~~~~~V~ts~d~~~l~~lpk~VvIVGgG~iGvE~  327 (659)
T PTZ00153        248 HVQVIYERGHIVDKNTIKSEKSGKEFKVKNIIIATGSTPNIPDNIEVDQKSVFTSDTAVKLEGLQNYMGIVGMGIIGLEF  327 (659)
T ss_pred             ceEEEEeEEEEecCCeEEEccCCEEEECCEEEEcCCCCCCCCCCCCCCCCcEEehHHhhhhhhcCCceEEECCCHHHHHH
Confidence            3678888998889887755 366789999999999999988763   222233333333333347899999999999999


Q ss_pred             HHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHH-HcCCcEEEecceeeecccCCC----eEEcC-------CC--
Q 017664          155 AGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWL-TSKKVEVILNQSVTLNTISDG----LIETS-------SG--  220 (368)
Q Consensus       155 a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l-~~~gv~i~~~~~v~~i~~~~~----~v~~~-------~g--  220 (368)
                      |..+.+  .+.+|+++++.+++++.+++++.+.+.+.+ +++||++++++.|.+++.+++    .+.+.       ++  
T Consensus       328 A~~l~~--~G~eVTLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~  405 (659)
T PTZ00153        328 MDIYTA--LGSEVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPK  405 (659)
T ss_pred             HHHHHh--CCCeEEEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccc
Confidence            998884  588999999999999999999999998875 679999999999998876543    22221       11  


Q ss_pred             ------cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecC-----CCCeEEecccCCCCccchHHHHH
Q 017664          221 ------ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRG-----FKNVFAIGDITDIPEIKQGYLAQ  289 (368)
Q Consensus       221 ------~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~-----~~~ifa~GD~~~~~~~~~~~~a~  289 (368)
                            +++++|.+|+|+|++|+++.+....+++..+ +|+|.||++|||..     .|||||+|||++.+  ++++.|.
T Consensus       406 ~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~-~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~--~La~~A~  482 (659)
T PTZ00153        406 KNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMK-RGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQ--MLAHTAS  482 (659)
T ss_pred             cccccceEEEcCEEEEEECcccCCccCCchhcCCccc-CCEEeECCCCCcCCCCCCCCCCEEEEEecCCCc--cCHHHHH
Confidence                  3799999999999999998765444444555 59999999999931     69999999999764  4889999


Q ss_pred             HHHHHHHHHHHHHH----cC---CCCCCccccc-------cCCCeEEEeecCCcceeEe----------cCcc-----cc
Q 017664          290 KHALVTAKNLKKLM----MG---RNKGTMATYK-------PGYPIALVSLGRREGVAHF----------PFLT-----IS  340 (368)
Q Consensus       290 ~~g~~aa~~i~~~l----~g---~~~~~~~~~~-------~~~~~~~~~~g~~~~~~~~----------~~~~-----~~  340 (368)
                      +||+.+|+||....    .+   ........|.       ..|+++.+|+++.+|....          .+..     ..
T Consensus       483 ~qg~~aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~~ift~PeiA~VGlTE~eA~~~g~~~~v~v~~~~~~~~~ra~~~  562 (659)
T PTZ00153        483 HQALKVVDWIEGKGKENVNINVENWASKPIIYKNIPSVCYTTPELAFIGLTEKEAKELYPPDNVGVEISFYKANSKVLCE  562 (659)
T ss_pred             HHHHHHHHHHcCCCccccccccccccccccccCcCCEEEECcCceEEeeCCHHHHHhcCCCcceEEEEEEecccchhhhc
Confidence            99999999997320    00   0000111111       2578999999888765321          1110     01


Q ss_pred             Cc----------------------cceeeeccccchhHHHHHcCCCC
Q 017664          341 GR----------------------IPGWIKSRDLFVGKTRKQLGLKP  365 (368)
Q Consensus       341 ~~----------------------~~~~~k~~~~~~~~~~~~lG~~~  365 (368)
                      +.                      ..+++|+  ++++++++|||+|+
T Consensus       563 ~~~~~p~~~~~~~y~~g~~~~~~~~~G~vKl--i~d~~t~rILGa~i  607 (659)
T PTZ00153        563 NNISFPNNSKNNSYNKGKYNTVDNTEGMVKI--VYLKDTKEILGMFI  607 (659)
T ss_pred             cccccccccccccccccccccccCCceEEEE--EEECCCCeEEEEEE
Confidence            11                      5789999  99999999999986

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=100.00  E-value=4.3e-41  Score=320.83  Aligned_cols=343  Identities=16%  Similarity=0.150  Sum_probs=242.6

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCC--------ceeeecc---cee---------------e--eecc---
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKE--------YFEITWA---SLR---------------A--VVEP---   63 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~--------~~~~~~~---~~~---------------~--~~~~---   63 (368)
                      ++|++||||||||+.+|..+++ |.+|+|||+..        .+|+.+.   .+.               .  ....   
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~   81 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE   81 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence            5899999999999999999984 99999999731        2443211   000               0  0000   


Q ss_pred             ---ccccccee------------eccccc--CceeEEEeEEEEeeccEEEec--CC--eEEEecEEEEecCCCCCCCCch
Q 017664           64 ---SFAVRSVI------------NHGDYL--SNVKIVVSTAVSITDTEVVTA--GG--QTFVYDYVVVATGHVESVPKSR  122 (368)
Q Consensus        64 ---~~~~~~~~------------~~~~~~--~~~~~~~~~~~~~~~~~v~~~--~g--~~~~~d~lvlAtG~~~~~p~~~  122 (368)
                         .+....+.            .....+  .++++++++..+++++++...  ++  ..++||+||||||++|..|+++
T Consensus        82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~p~ip  161 (484)
T TIGR01438        82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPGIP  161 (484)
T ss_pred             CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCCCCCCC
Confidence               00000000            000111  278999999999999977553  33  4799999999999998877654


Q ss_pred             HH--HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEE
Q 017664          123 TE--RLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVI  200 (368)
Q Consensus       123 ~~--~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~  200 (368)
                      +.  ...+..........+++++|||+|++|+|+|..+.+  .+.+|+++.+ +.+++.+++++.+.+++.|+++||+++
T Consensus       162 G~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~-~~~l~~~d~~~~~~l~~~L~~~gV~i~  238 (484)
T TIGR01438       162 GAKELCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAG--IGLDVTVMVR-SILLRGFDQDCANKVGEHMEEHGVKFK  238 (484)
T ss_pred             CccceeecHHHhhcccccCCCEEEECCCHHHHHHHHHHHH--hCCcEEEEEe-cccccccCHHHHHHHHHHHHHcCCEEE
Confidence            32  112222333223357899999999999999999985  5889999997 477888999999999999999999999


Q ss_pred             ecceeeecccCCC--eEEcCCC---cEEecCEEEEccCCCCCchhhhccccccccCC-CCcEEeCCCeeecCCCCeEEec
Q 017664          201 LNQSVTLNTISDG--LIETSSG---ETIDTDCHFMCTGKAMASSWLRETILKDSLDG-RGRLMVDENLRVRGFKNVFAIG  274 (368)
Q Consensus       201 ~~~~v~~i~~~~~--~v~~~~g---~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~-~g~i~vd~~~~~~~~~~ifa~G  274 (368)
                      +++.+.+++..++  .+.+.++   +++++|.+|+++|++|+++++....+++.+++ +|+|.||+++|| +.|+|||+|
T Consensus       239 ~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~T-s~p~IyA~G  317 (484)
T TIGR01438       239 RQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQT-NVPYIYAVG  317 (484)
T ss_pred             eCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCccc-CCCCEEEEE
Confidence            9998887765444  4555554   37999999999999999987655555556665 489999999998 899999999


Q ss_pred             ccCCCCccchHHHHHHHHHHHHHHHHHHHcC---CCCCCccccccCCCeEEEeecCCcceeEe----------cCcc---
Q 017664          275 DITDIPEIKQGYLAQKHALVTAKNLKKLMMG---RNKGTMATYKPGYPIALVSLGRREGVAHF----------PFLT---  338 (368)
Q Consensus       275 D~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----------~~~~---  338 (368)
                      ||+... +.+++.|.+||+.+|+||...-..   ....+...| ..|+++.+|+++++|....          ++..   
T Consensus       318 Dv~~~~-~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~i~-~~p~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~  395 (484)
T TIGR01438       318 DILEDK-QELTPVAIQAGRLLAQRLFSGSTVICDYENVPTTVF-TPLEYGACGLSEEKAVEKFGEENIEVFHSYFWPLEW  395 (484)
T ss_pred             EecCCC-ccchHHHHHHHHHHHHHHhcCCCcccccccCCeEEe-CCCceeeecCCHHHHHHhcCCCcEEEEEeecchhhh
Confidence            999632 236889999999999999731100   000111222 2578999999887765321          1111   


Q ss_pred             -cc---Cccceeeeccccch-hHHHHHcCCCCC
Q 017664          339 -IS---GRIPGWIKSRDLFV-GKTRKQLGLKPT  366 (368)
Q Consensus       339 -~~---~~~~~~~k~~~~~~-~~~~~~lG~~~~  366 (368)
                       ..   +...+++|+  +++ +++++|||+|+.
T Consensus       396 ~~~~~~~~~~g~~Kl--i~~~~~t~~ILG~~iv  426 (484)
T TIGR01438       396 TIPSRDNSNKCYAKA--VCNRKENERVVGFHVV  426 (484)
T ss_pred             HhhCCCccCCcEEEE--EEecCCCCeEEEEEEE
Confidence             11   114678998  885 579999999863

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PTZ00052 thioredoxin reductase; Provisional

Probab=100.00  E-value=9.4e-41  Score=319.98  Aligned_cols=339  Identities=19%  Similarity=0.194  Sum_probs=241.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC--------ceeeec---cceee--------------------ee
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE--------YFEITW---ASLRA--------------------VV   61 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~--------~~~~~~---~~~~~--------------------~~   61 (368)
                      ..++|++||||||||++||.+|. .|.+|+|||+++        .+|+..   .....                    .+
T Consensus         3 ~~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~   82 (499)
T PTZ00052          3 TFMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGW   82 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCC
Confidence            34689999999999999999997 599999999632        244331   00100                    00


Q ss_pred             --cccccccceee------------cccc--cCceeEEEeEEEEeeccEEEecC---CeEEEecEEEEecCCCCCCCC-c
Q 017664           62 --EPSFAVRSVIN------------HGDY--LSNVKIVVSTAVSITDTEVVTAG---GQTFVYDYVVVATGHVESVPK-S  121 (368)
Q Consensus        62 --~~~~~~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~~v~~~~---g~~~~~d~lvlAtG~~~~~p~-~  121 (368)
                        ........+..            ....  ..+++++++++...+++++...+   +..++||+||||||+.|..|. +
T Consensus        83 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~p~~i  162 (499)
T PTZ00052         83 KTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGGRPSIPEDV  162 (499)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCCCCCCCCCC
Confidence              00000000000            0000  13677888888888888776532   357999999999999987663 4


Q ss_pred             hHH--HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEE
Q 017664          122 RTE--RLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEV  199 (368)
Q Consensus       122 ~~~--~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i  199 (368)
                      +..  ...+..........+++++|||+|++|+|+|..|.+  .+.+|+++++. .+++.+++++.+.+.+.|++.||++
T Consensus       163 ~G~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~GV~i  239 (499)
T PTZ00052        163 PGAKEYSITSDDIFSLSKDPGKTLIVGASYIGLETAGFLNE--LGFDVTVAVRS-IPLRGFDRQCSEKVVEYMKEQGTLF  239 (499)
T ss_pred             CCccceeecHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcC-cccccCCHHHHHHHHHHHHHcCCEE
Confidence            321  112222333323347899999999999999999985  58899999874 5678889999999999999999999


Q ss_pred             EecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccC
Q 017664          200 ILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDIT  277 (368)
Q Consensus       200 ~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~  277 (368)
                      ++++.+.+++..++  .+.+.+|+++++|.+++++|++|+.+++....+++.++++|++.+++. || +.|+|||+|||+
T Consensus       240 ~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~T-s~p~IyAiGDv~  317 (499)
T PTZ00052        240 LEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CT-NIPNIFAVGDVV  317 (499)
T ss_pred             EcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cC-CCCCEEEEEEec
Confidence            99999887765443  566778888999999999999999988765555557788898877777 87 899999999998


Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHHHcCCCCC-------CccccccCCCeEEEeecCCcceeEe----------cCcc--
Q 017664          278 DIPEIKQGYLAQKHALVTAKNLKKLMMGRNKG-------TMATYKPGYPIALVSLGRREGVAHF----------PFLT--  338 (368)
Q Consensus       278 ~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~----------~~~~--  338 (368)
                      ... +.+++.|.+||+.+|+||.    +....       +...| ..|+++.+|+++++|....          ++..  
T Consensus       318 ~~~-~~l~~~A~~~g~~aa~ni~----g~~~~~~~~~~~p~~if-t~p~ia~vGlte~~A~~~~~~~~~~~~~~~~~~~~  391 (499)
T PTZ00052        318 EGR-PELTPVAIKAGILLARRLF----KQSNEFIDYTFIPTTIF-TPIEYGACGYSSEAAIAKYGEDDIEEYLQEFNTLE  391 (499)
T ss_pred             CCC-cccHHHHHHHHHHHHHHHh----CCCCCcCccccCCeEEe-cCCcceeecCCHHHHHHhcCCCCEEEEEeecccch
Confidence            632 3478999999999999997    32111       11122 2588999999888775321          1111  


Q ss_pred             ---ccC---------------ccceeeeccccchh-HHHHHcCCCC
Q 017664          339 ---ISG---------------RIPGWIKSRDLFVG-KTRKQLGLKP  365 (368)
Q Consensus       339 ---~~~---------------~~~~~~k~~~~~~~-~~~~~lG~~~  365 (368)
                         ...               ...+|+|+  ++++ ++++|||+|+
T Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~g~~Kl--i~~~~~~~~IlG~~i  435 (499)
T PTZ00052        392 IAAVHREKHERARKDEYDFDVSSNCLAKL--VCVKSEDNKVVGFHF  435 (499)
T ss_pred             hhccccccccccccccccccccCCceEEE--EEecCCCCEEEEEEE
Confidence               001               14689998  9997 4899999986

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=100.00  E-value=2.8e-39  Score=302.79  Aligned_cols=280  Identities=19%  Similarity=0.265  Sum_probs=211.0

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc-C--CcEEEEcCCCceeeeccceee-eecccccccceeeccccc--CceeEEEe-EE
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS-F--ADVVLIDEKEYFEITWASLRA-VVEPSFAVRSVINHGDYL--SNVKIVVS-TA   87 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~-g--~~v~lie~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~   87 (368)
                      ++.+|||||||+||++||..|++ +  .+|+|+++++.+.+....+.. ...............+++  .+++++.+ .+
T Consensus         2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V   81 (396)
T PRK09754          2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTI   81 (396)
T ss_pred             CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEE
Confidence            45689999999999999999984 4  589999999877654333321 111111111111111222  36777765 56


Q ss_pred             EEeec--cEEEecCCeEEEecEEEEecCCCCCCCCc---hHH------HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHH
Q 017664           88 VSITD--TEVVTAGGQTFVYDYVVVATGHVESVPKS---RTE------RLSQYEKDFEKVKSANSVLIVGGGPTGVELAG  156 (368)
Q Consensus        88 ~~~~~--~~v~~~~g~~~~~d~lvlAtG~~~~~p~~---~~~------~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~  156 (368)
                      ..++.  +.+.+.+|..+.||+||||||+.|..|+.   ...      .+.+.....+.+..+++++|||+|++|+|+|.
T Consensus        82 ~~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~  161 (396)
T PRK09754         82 KTLGRDTRELVLTNGESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAA  161 (396)
T ss_pred             EEEECCCCEEEECCCCEEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHH
Confidence            67765  47788888899999999999999755432   111      23344444445556899999999999999999


Q ss_pred             HHhhhCCCCeEEEEecCcccccc-cCchhHHHHHHHHHcCCcEEEecceeeecccCCC-eEEcCCCcEEecCEEEEccCC
Q 017664          157 EIAVDFPDKKVILVHRGPKLLEF-VGSRASQIALDWLTSKKVEVILNQSVTLNTISDG-LIETSSGETIDTDCHFMCTGK  234 (368)
Q Consensus       157 ~l~~~~~~~~v~~i~~~~~~l~~-~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~v~~~~g~~i~~d~vi~a~G~  234 (368)
                      .|.+  .+.+|+++++.+++++. .++.....+.+.++++||++++++.+.+++.++. .+.+.+|+++++|.+|+++|.
T Consensus       162 ~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~i~aD~Vv~a~G~  239 (396)
T PRK09754        162 SATQ--RRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVIYGIGI  239 (396)
T ss_pred             HHHH--cCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEcCCEEEEEECCCCEEECCEEEECCCC
Confidence            9985  58899999999988764 5777888899999999999999999998876333 567888999999999999999


Q ss_pred             CCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCcc-------chHHHHHHHHHHHHHHHHH
Q 017664          235 AMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEI-------KQGYLAQKHALVTAKNLKK  301 (368)
Q Consensus       235 ~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~-------~~~~~a~~~g~~aa~~i~~  301 (368)
                      .|+..++...++  ..  ++.+.||+++|| +.|||||+|||+..+.+       .++..|.+||+.||+||..
T Consensus       240 ~pn~~l~~~~gl--~~--~~gi~vd~~~~t-s~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g  308 (396)
T PRK09754        240 SANDQLAREANL--DT--ANGIVIDEACRT-CDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLG  308 (396)
T ss_pred             ChhhHHHHhcCC--Cc--CCCEEECCCCcc-CCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcC
Confidence            999888766554  33  356999999998 89999999999965322       3457899999999999983

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=100.00  E-value=1.4e-38  Score=296.50  Aligned_cols=276  Identities=25%  Similarity=0.347  Sum_probs=210.9

Q ss_pred             CcEEEECCChHHHHHHHHhhc---CCcEEEEcCCCceeeeccceeeeecccccccc-ee-eccccc--CceeEEE-eEEE
Q 017664           17 KKVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYFEITWASLRAVVEPSFAVRS-VI-NHGDYL--SNVKIVV-STAV   88 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~--~~~~~~~-~~~~   88 (368)
                      +++||||||+||+++|..|++   +.+|+||++++...+....+............ .. ...+++  .+++++. .++.
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~   82 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT   82 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence            589999999999999999974   78999999988655433333222222111111 11 122222  2677764 5777


Q ss_pred             Eeecc--EEEecCCeEEEecEEEEecCCCCCCCCchH-------HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHh
Q 017664           89 SITDT--EVVTAGGQTFVYDYVVVATGHVESVPKSRT-------ERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIA  159 (368)
Q Consensus        89 ~~~~~--~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~-------~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~  159 (368)
                      .++..  .+.+ ++..+.||+||+|||+.|..|++++       ..+.++.........+++++|||+|++|+|+|..|.
T Consensus        83 ~id~~~~~v~~-~~~~~~yd~LVlATG~~~~~p~i~G~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~  161 (377)
T PRK04965         83 DIDAEAQVVKS-QGNQWQYDKLVLATGASAFVPPIPGRELMLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLC  161 (377)
T ss_pred             EEECCCCEEEE-CCeEEeCCEEEECCCCCCCCCCCCCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHH
Confidence            77753  5554 6778999999999999977666442       223444444445556899999999999999999998


Q ss_pred             hhCCCCeEEEEecCcccccc-cCchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCC
Q 017664          160 VDFPDKKVILVHRGPKLLEF-VGSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       160 ~~~~~~~v~~i~~~~~~l~~-~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                      +  .+.+|+++++.+++++. +++.+...+.+.+++.||++++++.+.+++.+++  .+.+.+|+++++|.+|+|+|.+|
T Consensus       162 ~--~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p  239 (377)
T PRK04965        162 R--AGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRP  239 (377)
T ss_pred             h--cCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCc
Confidence            5  57899999999888764 5777888999999999999999999998887654  57788999999999999999999


Q ss_pred             CchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCcc--chHHHHHHHHHHHHHHHH
Q 017664          237 ASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEI--KQGYLAQKHALVTAKNLK  300 (368)
Q Consensus       237 ~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~--~~~~~a~~~g~~aa~~i~  300 (368)
                      +.+++...++  ..+ +| +.||+++|| +.|||||+|||+..+..  .....|.+||+.+|+||.
T Consensus       240 ~~~l~~~~gl--~~~-~g-i~vd~~l~t-s~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~  300 (377)
T PRK04965        240 NTALARRAGL--AVN-RG-IVVDSYLQT-SAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLL  300 (377)
T ss_pred             chHHHHHCCC--CcC-CC-EEECCCccc-CCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhc
Confidence            9888877765  333 45 999999998 79999999999975421  245668999999999997

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=4.7e-39  Score=279.48  Aligned_cols=339  Identities=20%  Similarity=0.279  Sum_probs=263.8

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceee--------------eecc-c------------cc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRA--------------VVEP-S------------FA   66 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~--------------~~~~-~------------~~   66 (368)
                      ..+|++|||+||+|..||.... .|++.++||++..+|+.......              .... .            +.
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d  117 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD  117 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence            5699999999999999998876 59999999999887754311100              0000 0            00


Q ss_pred             ccceeec------------cccc--CceeEEEeEEEEeeccEEEec--CC--eEEEecEEEEecCCC-CCCCCc--hHHH
Q 017664           67 VRSVINH------------GDYL--SNVKIVVSTAVSITDTEVVTA--GG--QTFVYDYVVVATGHV-ESVPKS--RTER  125 (368)
Q Consensus        67 ~~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~v~~~--~g--~~~~~d~lvlAtG~~-~~~p~~--~~~~  125 (368)
                      .+.....            ...+  .++..+.+....++++.|...  ||  ..+.++++++|||+. +.+|++  +++.
T Consensus       118 l~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~~~PGI~IDekk  197 (506)
T KOG1335|consen  118 LQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVTPFPGITIDEKK  197 (506)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCccCCCCCeEecCce
Confidence            0000000            0011  156788899999999876543  33  578999999999996 788885  5666


Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEeccee
Q 017664          126 LSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSV  205 (368)
Q Consensus       126 ~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v  205 (368)
                      +.+....+....-+++++|+|+|.+|+|+.....  +.+.+||+++-.+.+.+.+|.+++..+++.|.+.|++|+++++|
T Consensus       198 IVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~--rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv  275 (506)
T KOG1335|consen  198 IVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWS--RLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKV  275 (506)
T ss_pred             EEecCCccchhhCcceEEEEcCceeeeehhhHHH--hcCCeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccEE
Confidence            7677776666677999999999999999999887  47999999999999999999999999999999999999999999


Q ss_pred             eecccCCC---eEEcCC-----CcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccC
Q 017664          206 TLNTISDG---LIETSS-----GETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDIT  277 (368)
Q Consensus       206 ~~i~~~~~---~v~~~~-----g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~  277 (368)
                      ...+.+.+   .+.+.+     .++++||.+++++|++|-+.-+..+.+++..|++|++.||..+++ ++||||++||+.
T Consensus       276 ~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t-~vP~i~~IGDv~  354 (506)
T KOG1335|consen  276 TSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQT-KVPHIYAIGDVT  354 (506)
T ss_pred             EEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccccc-cCCceEEecccC
Confidence            98887654   333322     258999999999999999888888888888899999999999999 799999999999


Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHHHcCCC------CCCccccccCCCeEEEeecCCcc--------eeEecCcc-----
Q 017664          278 DIPEIKQGYLAQKHALVTAKNLKKLMMGRN------KGTMATYKPGYPIALVSLGRREG--------VAHFPFLT-----  338 (368)
Q Consensus       278 ~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~------~~~~~~~~~~~~~~~~~~g~~~~--------~~~~~~~~-----  338 (368)
                      ..|.  +++.|..||..+.+.|.    |..      ..|-.-| .+|+++-||.++.+.        ++.|+|..     
T Consensus       355 ~gpM--LAhkAeeegI~~VE~i~----g~~~hv~ynciP~v~y-thPEvawVG~TEeqlkeegi~y~vgkfpF~aNsRak  427 (506)
T KOG1335|consen  355 LGPM--LAHKAEEEGIAAVEGIA----GGHGHVDYNCIPSVVY-THPEVAWVGKTEEQLKEEGIKYKVGKFPFSANSRAK  427 (506)
T ss_pred             Ccch--hhhhhhhhchhheeeec----ccCcccccCCCCceee-cccceeeeccchhhHHhcCcceEeeeccccccchhh
Confidence            7654  89999999999999887    332      1111223 268999999987765        34555543     


Q ss_pred             ccCccceeeeccccchhHHHHHcCCCC
Q 017664          339 ISGRIPGWIKSRDLFVGKTRKQLGLKP  365 (368)
Q Consensus       339 ~~~~~~~~~k~~~~~~~~~~~~lG~~~  365 (368)
                      ......||+|+  ++|+++++|||+|+
T Consensus       428 tn~d~eg~vKv--l~d~~tdkiLGvHi  452 (506)
T KOG1335|consen  428 TNNDTEGFVKV--LADKETDKILGVHI  452 (506)
T ss_pred             ccCCccceeEE--EecCCCCcEEEEEE
Confidence            13345799999  99999999999986

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.1e-38  Score=273.87  Aligned_cols=354  Identities=25%  Similarity=0.287  Sum_probs=266.4

Q ss_pred             CceeeeccCC----cCCCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeecc-------cee----------
Q 017664            1 MCVWLWGSTA----AGLVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWA-------SLR----------   58 (368)
Q Consensus         1 ~~~~~~~~~~----~~~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~-------~~~----------   58 (368)
                      ||++...+.+    ....+.+|.+|||||.+|+++|++.+. |.++.|+|..-.+|+..-       .+.          
T Consensus         1 ~~r~~~~~~~~~~~a~~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~   80 (478)
T KOG0405|consen    1 MARQMLVDGEIDKMAADVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEM   80 (478)
T ss_pred             CCccccccCCCCcccccccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHh
Confidence            5665333322    233357999999999999999999884 999999998744442210       000          


Q ss_pred             -e--------eecccccccceeeccc------------c--cCceeEEEeEEEEeecc--EEEecCCe--EEEecEEEEe
Q 017664           59 -A--------VVEPSFAVRSVINHGD------------Y--LSNVKIVVSTAVSITDT--EVVTAGGQ--TFVYDYVVVA  111 (368)
Q Consensus        59 -~--------~~~~~~~~~~~~~~~~------------~--~~~~~~~~~~~~~~~~~--~v~~~~g~--~~~~d~lvlA  111 (368)
                       .        -....+....+.+.++            .  -.+++++.++...+++.  .|...|+.  .+++++++||
T Consensus        81 ~da~~yG~~~~~~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIA  160 (478)
T KOG0405|consen   81 EDAKDYGFPINEEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIA  160 (478)
T ss_pred             hhhhhcCCccccccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEE
Confidence             0        0011111111111111            0  12578899999999988  55566774  3688999999


Q ss_pred             cCCCCCCCCchHHHH-HHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHH
Q 017664          112 TGHVESVPKSRTERL-SQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALD  190 (368)
Q Consensus       112 tG~~~~~p~~~~~~~-~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~  190 (368)
                      ||.+|.+|.+++..+ .+.+.+.+....+++++|+|+|++++|+|..++  ..+.+++++-|.+.+|..+|+.+++.+.+
T Consensus       161 tGg~p~~PnIpG~E~gidSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~--gLgsethlfiR~~kvLR~FD~~i~~~v~~  238 (478)
T KOG0405|consen  161 TGGRPIIPNIPGAELGIDSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFA--GLGSETHLFIRQEKVLRGFDEMISDLVTE  238 (478)
T ss_pred             eCCccCCCCCCchhhccccccccchhhcCceEEEEccceEEEEhhhHHh--hcCCeeEEEEecchhhcchhHHHHHHHHH
Confidence            999988777664332 344455555567999999999999999999988  57999999999999999999999999999


Q ss_pred             HHHcCCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCC
Q 017664          191 WLTSKKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGF  267 (368)
Q Consensus       191 ~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~  267 (368)
                      .++..||++|+++.++++.....   .+.+..|+...+|.++||+|+.|++.-+..+.++++++++|.|.||++.+| |.
T Consensus       239 ~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~T-nv  317 (478)
T KOG0405|consen  239 HLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNT-NV  317 (478)
T ss_pred             HhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccC-CC
Confidence            99999999999999988776543   456666765569999999999999998898989999999999999999999 89


Q ss_pred             CCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCccccc--c-----CCCeEEEeecCCcceeEecCc---
Q 017664          268 KNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYK--P-----GYPIALVSLGRREGVAHFPFL---  337 (368)
Q Consensus       268 ~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~~~~~~~~--~-----~~~~~~~~~g~~~~~~~~~~~---  337 (368)
                      |+||++||+++.-.  +...|...|+..|+.+..   +....++ .|.  |     +|+...+||.++||+.++.-.   
T Consensus       318 p~I~avGDv~gk~~--LTPVAiaagr~la~rlF~---~~~~~kl-dY~nVp~vVFshP~igtVGLtE~EAiekyg~~~i~  391 (478)
T KOG0405|consen  318 PSIWAVGDVTGKIN--LTPVAIAAGRKLANRLFG---GGKDTKL-DYENVPCVVFSHPPIGTVGLTEEEAIEKYGKGDIK  391 (478)
T ss_pred             CceEEeccccCcEe--cchHHHhhhhhHHHHhhc---CCCCCcc-ccccCceEEEecCCcccccCCHHHHHHHhCccceE
Confidence            99999999997633  678899999988888763   2333333 443  2     578888999999998776311   


Q ss_pred             -----------cccCc-cceeeeccccchhHHHHHcCCCC
Q 017664          338 -----------TISGR-IPGWIKSRDLFVGKTRKQLGLKP  365 (368)
Q Consensus       338 -----------~~~~~-~~~~~k~~~~~~~~~~~~lG~~~  365 (368)
                                 .+.+. ..-+||+  ++..++.+++|+|+
T Consensus       392 vy~s~F~pm~~a~~~~k~kt~mKl--vc~~~~eKVvG~hm  429 (478)
T KOG0405|consen  392 VYTSKFNPMKYAMSGRKEKTLMKL--VCAGKSEKVVGVHM  429 (478)
T ss_pred             EEecCCchhHhHhhcCCcceEEEE--EEecCCCcEEEEEE
Confidence                       12333 3457888  99999999999986

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=100.00  E-value=3.6e-37  Score=308.90  Aligned_cols=275  Identities=16%  Similarity=0.270  Sum_probs=216.1

Q ss_pred             EEEECCChHHHHHHHHhhc----CCcEEEEcCCCceeeeccceeeeeccccc-ccceeeccccc--CceeEEEe-EEEEe
Q 017664           19 VVVIGGGVGGSLLAYHIQS----FADVVLIDEKEYFEITWASLRAVVEPSFA-VRSVINHGDYL--SNVKIVVS-TAVSI   90 (368)
Q Consensus        19 vvIIGaG~aGl~aA~~L~~----g~~v~lie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~-~~~~~   90 (368)
                      |||||||+||+++|.+|++    +++|+|||+++..++....+......... .+...+..+++  .+++++.. .+..+
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I   80 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI   80 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence            6899999999999998762    67999999999887665444433322211 12222333333  26788765 67777


Q ss_pred             ec--cEEEecCCeEEEecEEEEecCCCCCCCCchH---------HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHh
Q 017664           91 TD--TEVVTAGGQTFVYDYVVVATGHVESVPKSRT---------ERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIA  159 (368)
Q Consensus        91 ~~--~~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~---------~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~  159 (368)
                      ++  +.|.+.+|..+.||+||+|||+.|..|++++         ..+.++....+....+++++|||+|++|+|+|..|.
T Consensus        81 d~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~  160 (785)
T TIGR02374        81 DTDQKQVITDAGRTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQ  160 (785)
T ss_pred             ECCCCEEEECCCcEeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHH
Confidence            75  4788888989999999999999976665432         123444444444556899999999999999999998


Q ss_pred             hhCCCCeEEEEecCccccc-ccCchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCC
Q 017664          160 VDFPDKKVILVHRGPKLLE-FVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       160 ~~~~~~~v~~i~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                      +  .+.+|+++++.+++++ .+++.....+.+.++++||++++++.+.++..++.  .+.+.+|+++++|.+|+++|.+|
T Consensus       161 ~--~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~P  238 (785)
T TIGR02374       161 N--LGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRP  238 (785)
T ss_pred             h--cCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCc
Confidence            5  5889999999988876 47888889999999999999999999988875543  67888999999999999999999


Q ss_pred             CchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCcc--chHHHHHHHHHHHHHHHH
Q 017664          237 ASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEI--KQGYLAQKHALVTAKNLK  300 (368)
Q Consensus       237 ~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~--~~~~~a~~~g~~aa~~i~  300 (368)
                      +.+++...++  ..+  |.+.||+++|| +.|||||+|||+..+..  .....|.+||+++|.||.
T Consensus       239 n~~la~~~gl--~~~--ggI~Vd~~~~T-s~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~  299 (785)
T TIGR02374       239 NDELAVSAGI--KVN--RGIIVNDSMQT-SDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHIC  299 (785)
T ss_pred             CcHHHHhcCC--ccC--CCEEECCCccc-CCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhc
Confidence            9998877666  333  67999999998 89999999999976542  245678999999999997

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=100.00  E-value=3.6e-36  Score=265.62  Aligned_cols=320  Identities=29%  Similarity=0.374  Sum_probs=232.0

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccc----cCceeEEEeEE
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDY----LSNVKIVVSTA   87 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~   87 (368)
                      ..++++|||+|+|++|.+.++.|. ..++|+||++.++|-|.|.......+.-.......|.+..    ..++.+++++.
T Consensus        52 ~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eAec  131 (491)
T KOG2495|consen   52 GGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEAEC  131 (491)
T ss_pred             CCCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEeccc
Confidence            345789999999999999999997 5899999999999998876644333322111122222211    12567888888


Q ss_pred             EEeecc--EEE----ecCC----eEEEecEEEEecCCCC---CCCCch-----HHHHHHHHHHH-------H--------
Q 017664           88 VSITDT--EVV----TAGG----QTFVYDYVVVATGHVE---SVPKSR-----TERLSQYEKDF-------E--------  134 (368)
Q Consensus        88 ~~~~~~--~v~----~~~g----~~~~~d~lvlAtG~~~---~~p~~~-----~~~~~~~~~~~-------~--------  134 (368)
                      ..+|+.  .++    +.++    ..+.|||||+|+|+.+   .+|+..     +..+++..+..       +        
T Consensus       132 ~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~  211 (491)
T KOG2495|consen  132 TKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLS  211 (491)
T ss_pred             EeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCC
Confidence            888864  332    3344    5789999999999995   455532     12222222211       1        


Q ss_pred             --HHhcCCeEEEEcCchhHHHHHHHHhhh--------CC----CCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEE
Q 017664          135 --KVKSANSVLIVGGGPTGVELAGEIAVD--------FP----DKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVI  200 (368)
Q Consensus       135 --~~~~~~~v~VvG~g~~~~e~a~~l~~~--------~~----~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~  200 (368)
                        +..+--+++||||||+|+|+|.+|.+-        +|    ..+|++++..+.+|+.++..+....++.+.+.||++.
T Consensus       212 ~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~  291 (491)
T KOG2495|consen  212 DEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLD  291 (491)
T ss_pred             hHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceee
Confidence              112346899999999999999998852        22    3589999999999999999999999999999999999


Q ss_pred             ecceeeecccCCCeEEcCCC--cEEecCEEEEccCCCCCchhhhccccccccCCCC--cEEeCCCeeecCCCCeEEeccc
Q 017664          201 LNQSVTLNTISDGLIETSSG--ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRG--RLMVDENLRVRGFKNVFAIGDI  276 (368)
Q Consensus       201 ~~~~v~~i~~~~~~v~~~~g--~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g--~i~vd~~~~~~~~~~ifa~GD~  276 (368)
                      +++.|+.++..+-.+.+.+|  ++|++-+++|+||..|. ++......  ..++.|  .+.||+.||+++.+||||+|||
T Consensus       292 ~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~r-p~~k~lm~--~i~e~~rr~L~vDE~LrV~G~~nvfAiGDc  368 (491)
T KOG2495|consen  292 TGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPR-PVIKDLMK--QIDEQGRRGLAVDEWLRVKGVKNVFAIGDC  368 (491)
T ss_pred             cccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCc-hhhhhHhh--cCCccCceeeeeeceeeccCcCceEEeccc
Confidence            99999977755445556666  48999999999998864 34443332  234444  7999999999999999999999


Q ss_pred             CCCCc-cchHHHHHHHHHHHHHHHHHHHcCCCC---CC----------ccccccCCCeEEEeecCCcceeEec
Q 017664          277 TDIPE-IKQGYLAQKHALVTAKNLKKLMMGRNK---GT----------MATYKPGYPIALVSLGRREGVAHFP  335 (368)
Q Consensus       277 ~~~~~-~~~~~~a~~~g~~aa~~i~~~l~g~~~---~~----------~~~~~~~~~~~~~~~g~~~~~~~~~  335 (368)
                      +..+. +.+++.|.+||.++|+++....++...   +.          +.+|.-.-..++..+|.+.|+++++
T Consensus       369 a~~~~~~~tAQVA~QqG~yLAk~fn~m~k~~~~~e~~~~r~~~~~~~~f~PF~Y~H~GalA~lG~ekaiAdl~  441 (491)
T KOG2495|consen  369 ADQRGLKPTAQVAEQQGAYLAKNFNKMGKGGNLPEGPSARLRGEGRHQFKPFKYKHLGALAYLGREKAIADLP  441 (491)
T ss_pred             cccccCccHHHHHHHHHHHHHHHHHHHhcccCCCccchhhhhhhhhhccCCcccccccceeeccccchhhcCc
Confidence            95443 349999999999999999887654321   11          1222212345888999999999987

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=100.00  E-value=1.2e-35  Score=281.53  Aligned_cols=325  Identities=20%  Similarity=0.334  Sum_probs=234.4

Q ss_pred             HHHHHhhc---CCcEEEEcCCCceeeeccceeeeecccccc-cceee--ccccc--CceeEE-EeEEEEeec--cEEEec
Q 017664           30 LLAYHIQS---FADVVLIDEKEYFEITWASLRAVVEPSFAV-RSVIN--HGDYL--SNVKIV-VSTAVSITD--TEVVTA   98 (368)
Q Consensus        30 ~aA~~L~~---g~~v~lie~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~--~~~~~~-~~~~~~~~~--~~v~~~   98 (368)
                      +||.+|++   +.+|+|||+++.+.+.+..+.......... +....  ..+++  .++++. ..++..+++  +.+.+.
T Consensus         1 saA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~   80 (427)
T TIGR03385         1 SAASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVVVR   80 (427)
T ss_pred             CHHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEECCCCEEEEE
Confidence            46778873   689999999998887665554443332221 11111  11221  267764 567877774  355543


Q ss_pred             C---CeEEE--ecEEEEecCCCCCCCCchH---H------HHHHHHHHHHHH--hcCCeEEEEcCchhHHHHHHHHhhhC
Q 017664           99 G---GQTFV--YDYVVVATGHVESVPKSRT---E------RLSQYEKDFEKV--KSANSVLIVGGGPTGVELAGEIAVDF  162 (368)
Q Consensus        99 ~---g~~~~--~d~lvlAtG~~~~~p~~~~---~------~~~~~~~~~~~~--~~~~~v~VvG~g~~~~e~a~~l~~~~  162 (368)
                      +   +..+.  ||+||||||+.|..|++++   .      .+.+.......+  ..+++++|+|+|++|+|+|..|.+  
T Consensus        81 ~~~~~~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~--  158 (427)
T TIGR03385        81 NNKTNETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRE--  158 (427)
T ss_pred             ECCCCCEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHh--
Confidence            2   45677  9999999999976665432   1      222233222222  347899999999999999999885  


Q ss_pred             CCCeEEEEecCccc-ccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCCcEEecCEEEEccCCCCCchhh
Q 017664          163 PDKKVILVHRGPKL-LEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWL  241 (368)
Q Consensus       163 ~~~~v~~i~~~~~~-l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~  241 (368)
                      .+.+|+++++.+.+ .+.+++++...+.+.+++.||++++++.+.++..++..+.+.+|+++++|.+|+++|.+|+.+++
T Consensus       159 ~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l  238 (427)
T TIGR03385       159 RGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNSELA  238 (427)
T ss_pred             CCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCCHHHH
Confidence            57899999998887 45678888899999999999999999999988765434466788899999999999999999988


Q ss_pred             hccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCc--------cchHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Q 017664          242 RETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPE--------IKQGYLAQKHALVTAKNLKKLMMGRNKGTMAT  313 (368)
Q Consensus       242 ~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~--------~~~~~~a~~~g~~aa~~i~~~l~g~~~~~~~~  313 (368)
                      ...++  .++++|++.||+++|| +.|+|||+|||+..+.        +++++.|.+||+.+|+||.    |++.. ...
T Consensus       239 ~~~gl--~~~~~G~i~vd~~~~t-~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~----g~~~~-~~~  310 (427)
T TIGR03385       239 KDSGL--KLGETGAIWVNEKFQT-SVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIA----GNDIE-FKG  310 (427)
T ss_pred             HhcCc--ccCCCCCEEECCCcEe-CCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhc----CCCCC-CCC
Confidence            77665  6678899999999998 7999999999997432        3478899999999999997    43221 111


Q ss_pred             --cc-----cCCCeEEEeecCCccee--------EecCc----cccCccceeeeccccchhHHHHHcCCCCC
Q 017664          314 --YK-----PGYPIALVSLGRREGVA--------HFPFL----TISGRIPGWIKSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       314 --~~-----~~~~~~~~~~g~~~~~~--------~~~~~----~~~~~~~~~~k~~~~~~~~~~~~lG~~~~  366 (368)
                        ..     ..++++.+|+++.++..        .+.+.    ...+...+++|+  ++++++++|||+|+.
T Consensus       311 ~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~g~~kl--i~~~~~~~ilG~~~~  380 (427)
T TIGR03385       311 VLGTNITKFFDLTIASTGVTENEAKKLNIDYKTVFVKAKTHANYYPGNSPLHLKL--IYEKDTRRILGAQAV  380 (427)
T ss_pred             cceeeEEEEcCeEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEE--EEECCCCeEEEEEEE
Confidence              11     24678888887765542        11111    123555788998  999999999999863

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=100.00  E-value=1e-35  Score=269.40  Aligned_cols=273  Identities=24%  Similarity=0.308  Sum_probs=196.2

Q ss_pred             CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeee-ccccc-----ccceeeccccc--CceeEEEeEE
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVV-EPSFA-----VRSVINHGDYL--SNVKIVVSTA   87 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~--~~~~~~~~~~   87 (368)
                      +||+|||||||||++|..|+ +|.+|+|||+++ .+..+....... .+.+.     .+......+++  .+++++...+
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~v   79 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIYEEV   79 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEEEEE
Confidence            58999999999999999997 599999999887 332211110000 01110     00001111111  1567766777


Q ss_pred             EEeecc----EEEecCCeEEEecEEEEecCCCCCCCCchHHH------HHHHHHHHHHHhcCCeEEEEcCchhHHHHHHH
Q 017664           88 VSITDT----EVVTAGGQTFVYDYVVVATGHVESVPKSRTER------LSQYEKDFEKVKSANSVLIVGGGPTGVELAGE  157 (368)
Q Consensus        88 ~~~~~~----~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~~~------~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~  157 (368)
                      ..+++.    .+.+.++..+.||+||+|||+.|..|++++..      +............+++++|+|+|++|+|+|..
T Consensus        80 ~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~  159 (300)
T TIGR01292        80 IKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALY  159 (300)
T ss_pred             EEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecChhhcCCCEEEEECCChHHHHHHHH
Confidence            777754    46666778899999999999997766544321      11111111233457899999999999999999


Q ss_pred             HhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcC-CcEEEecceeeecccCCC--eEEc-----CCCcEEecCEEE
Q 017664          158 IAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSK-KVEVILNQSVTLNTISDG--LIET-----SSGETIDTDCHF  229 (368)
Q Consensus       158 l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~--~v~~-----~~g~~i~~d~vi  229 (368)
                      +.+  .+.+|+++++.+.+.      ....+.+.+++. ||++++++.+.+++.++.  .+.+     .+++++++|.+|
T Consensus       160 l~~--~~~~V~~v~~~~~~~------~~~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi  231 (300)
T TIGR01292       160 LTR--IAKKVTLVHRRDKFR------AEKILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVF  231 (300)
T ss_pred             HHh--hcCEEEEEEeCcccC------cCHHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEE
Confidence            985  478999999887642      234566777777 999999999998876543  2333     223579999999


Q ss_pred             EccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHH
Q 017664          230 MCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLM  303 (368)
Q Consensus       230 ~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l  303 (368)
                      +++|++|+.+++... +  .++++|++.||+++++ ++||||++|||++. .++.+..|+.||+.||.+|.++|
T Consensus       232 ~a~G~~~~~~~l~~~-~--~~~~~g~i~v~~~~~t-~~~~vya~GD~~~~-~~~~~~~A~~~g~~aa~~i~~~~  300 (300)
T TIGR01292       232 IAIGHEPNTELLKGL-L--ELDEGGYIVTDEGMRT-SVPGVFAAGDVRDK-GYRQAVTAAGDGCIAALSAERYL  300 (300)
T ss_pred             EeeCCCCChHHHHHh-h--eecCCCcEEECCCCcc-CCCCEEEeecccCc-chhhhhhhhhhHHHHHHHHHhhC
Confidence            999999999888776 4  5677899999999998 89999999999974 34578899999999999998653

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK10262 thioredoxin reductase; Provisional

Probab=100.00  E-value=2.3e-34  Score=262.57  Aligned_cols=281  Identities=18%  Similarity=0.200  Sum_probs=195.4

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeee---ec--ccccc----cceeecccccCceeE
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAV---VE--PSFAV----RSVINHGDYLSNVKI   82 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~---~~--~~~~~----~~~~~~~~~~~~~~~   82 (368)
                      ..+.+||+|||||||||+||..|+ +|+++++||+.+ .+.........   ..  .....    +.+....+.+ +.++
T Consensus         3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   80 (321)
T PRK10262          3 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGME-KGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKF-ETEI   80 (321)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeec-CCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHC-CCEE
Confidence            356789999999999999999987 599999999653 33221111100   00  00000    1111111111 2344


Q ss_pred             EEeEEEEeec--cE--EEecCCeEEEecEEEEecCCCCCCCCchHHH------HHHHHHHHHHHhcCCeEEEEcCchhHH
Q 017664           83 VVSTAVSITD--TE--VVTAGGQTFVYDYVVVATGHVESVPKSRTER------LSQYEKDFEKVKSANSVLIVGGGPTGV  152 (368)
Q Consensus        83 ~~~~~~~~~~--~~--v~~~~g~~~~~d~lvlAtG~~~~~p~~~~~~------~~~~~~~~~~~~~~~~v~VvG~g~~~~  152 (368)
                      ....+..++.  +.  +... ...+.||+||+|||+.|..|+++...      +..+.........+++++|+|+|++|+
T Consensus        81 ~~~~v~~v~~~~~~~~v~~~-~~~~~~d~vilAtG~~~~~~~i~g~~~~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~  159 (321)
T PRK10262         81 IFDHINKVDLQNRPFRLTGD-SGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAV  159 (321)
T ss_pred             EeeEEEEEEecCCeEEEEec-CCEEEECEEEECCCCCCCCCCCCCHHHcCCCcEEEeecCCHHHcCCCEEEEECCCHHHH
Confidence            4545544543  23  3332 34689999999999998776654322      111222222345689999999999999


Q ss_pred             HHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCC------CcEE
Q 017664          153 ELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSS------GETI  223 (368)
Q Consensus       153 e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~------g~~i  223 (368)
                      |+|..|.+  .+.+|+++++.+.+.  .++.+...+.+.+++.||++++++.++++..+++   .+++.+      .+++
T Consensus       160 e~A~~l~~--~~~~Vtlv~~~~~~~--~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i  235 (321)
T PRK10262        160 EEALYLSN--IASEVHLIHRRDGFR--AEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESL  235 (321)
T ss_pred             HHHHHHHh--hCCEEEEEEECCccC--CCHHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEE
Confidence            99999985  478999999987652  3455778888899999999999999999876653   344432      2479


Q ss_pred             ecCEEEEccCCCCCchhhhccccccccCCCCcEEeCC-----CeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHH
Q 017664          224 DTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDE-----NLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKN  298 (368)
Q Consensus       224 ~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~-----~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~  298 (368)
                      ++|.||+++|++|+.+++.. ++  .+ ++|++.||+     ++|| +.|+|||+|||+..+ .++...|+.+|..||..
T Consensus       236 ~~D~vv~a~G~~p~~~l~~~-~l--~~-~~g~i~vd~~~~~~~~~t-~~~~VyA~GD~~~~~-~~~~~~A~~~g~~Aa~~  309 (321)
T PRK10262        236 DVAGLFVAIGHSPNTAIFEG-QL--EL-ENGYIKVQSGIHGNATQT-SIPGVFAAGDVMDHI-YRQAITSAGTGCMAALD  309 (321)
T ss_pred             ECCEEEEEeCCccChhHhhc-cc--cc-cCCEEEECCCCccccccc-CCCCEEECeeccCCC-cceEEEEehhHHHHHHH
Confidence            99999999999999987654 34  33 468999998     5677 899999999999753 34556699999999999


Q ss_pred             HHHHHcCC
Q 017664          299 LKKLMMGR  306 (368)
Q Consensus       299 i~~~l~g~  306 (368)
                      |.++|.+-
T Consensus       310 ~~~~l~~~  317 (321)
T PRK10262        310 AERYLDGL  317 (321)
T ss_pred             HHHHHHhc
Confidence            99988653

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=100.00  E-value=2.9e-34  Score=272.15  Aligned_cols=274  Identities=20%  Similarity=0.185  Sum_probs=188.3

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeecc-ceeeeecccccccceeeccccc--CceeEEEeEE
Q 017664           12 GLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWA-SLRAVVEPSFAVRSVINHGDYL--SNVKIVVSTA   87 (368)
Q Consensus        12 ~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~   87 (368)
                      ...+.++|+|||||||||++|..|+ +|++|+|+|+++..++.+. .+...   ....+......+.+  .+++++....
T Consensus       129 ~~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~---~~~~~~~~~~~~~l~~~gv~~~~~~~  205 (449)
T TIGR01316       129 APSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEF---RLPKEIVVTEIKTLKKLGVTFRMNFL  205 (449)
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCc---cCCHHHHHHHHHHHHhCCcEEEeCCc
Confidence            3456789999999999999999998 5999999999886653221 11100   01111111111111  2566665543


Q ss_pred             EEeeccEEEecCCeEEEecEEEEecCC-CCCCC---CchHHHHHHHHHHHH---------------HHhcCCeEEEEcCc
Q 017664           88 VSITDTEVVTAGGQTFVYDYVVVATGH-VESVP---KSRTERLSQYEKDFE---------------KVKSANSVLIVGGG  148 (368)
Q Consensus        88 ~~~~~~~v~~~~g~~~~~d~lvlAtG~-~~~~p---~~~~~~~~~~~~~~~---------------~~~~~~~v~VvG~g  148 (368)
                      +   .+.+.+.+. ...||+||+|||+ .|..|   +.+..++.+......               ....+++++|||+|
T Consensus       206 v---~~~v~~~~~-~~~yd~viiAtGa~~p~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG  281 (449)
T TIGR01316       206 V---GKTATLEEL-FSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGG  281 (449)
T ss_pred             c---CCcCCHHHH-HhhCCEEEEeCCCCCCCcCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCC
Confidence            3   223333332 3569999999998 46544   433222222221111               12346899999999


Q ss_pred             hhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccC-CC---eEEcC------
Q 017664          149 PTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTIS-DG---LIETS------  218 (368)
Q Consensus       149 ~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~-~~---~v~~~------  218 (368)
                      ++|+|+|..+.+  .+.+|+++++.++.    +........+.+++.||++++++.+.++..+ ++   .+.+.      
T Consensus       282 ~~a~d~A~~l~~--~G~~Vtlv~~~~~~----~~~~~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~  355 (449)
T TIGR01316       282 NTAVDSARTALR--LGAEVHCLYRRTRE----DMTARVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQE  355 (449)
T ss_pred             HHHHHHHHHHHH--cCCEEEEEeecCcc----cCCCCHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecC
Confidence            999999999884  57889999987652    1122234456788899999999999888653 23   22221      


Q ss_pred             ---CC-----------cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccch
Q 017664          219 ---SG-----------ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQ  284 (368)
Q Consensus       219 ---~g-----------~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~  284 (368)
                         +|           +++++|.||+++|+.|+..++...++  .++++|++.||+++|| +.|+|||+|||+..+  .+
T Consensus       356 ~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl--~~~~~G~i~vd~~~~T-s~~~VfA~GD~~~g~--~~  430 (449)
T TIGR01316       356 QIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRL--KTSERGTIVVDEDQRT-SIPGVFAGGDIILGA--AT  430 (449)
T ss_pred             cCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCc--ccCCCCeEEeCCCCcc-CCCCEEEecCCCCCc--HH
Confidence               22           36999999999999999887766555  6678899999999998 899999999999654  37


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 017664          285 GYLAQKHALVTAKNLKKLM  303 (368)
Q Consensus       285 ~~~a~~~g~~aa~~i~~~l  303 (368)
                      ...|+.+|+.||.+|.++|
T Consensus       431 v~~Ai~~G~~AA~~I~~~L  449 (449)
T TIGR01316       431 VIRAMGQGKRAAKSINEYL  449 (449)
T ss_pred             HHHHHHHHHHHHHHHHhhC
Confidence            8899999999999998754

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.1e-34  Score=254.06  Aligned_cols=275  Identities=24%  Similarity=0.288  Sum_probs=203.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhc-CCc-EEEEcCCCceeeeccceeeeec--ccccc-----cceeeccccc--CceeE
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQS-FAD-VVLIDEKEYFEITWASLRAVVE--PSFAV-----RSVINHGDYL--SNVKI   82 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~-g~~-v~lie~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~--~~~~~   82 (368)
                      ++.+||+|||||||||+||.++.+ +.+ ++|+|+... ++.+.... .+.  +.+..     .......++.  -++++
T Consensus         1 ~~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~-gg~~~~~~-~venypg~~~~~~g~~L~~~~~~~a~~~~~~~   78 (305)
T COG0492           1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEP-GGQLTKTT-DVENYPGFPGGILGPELMEQMKEQAEKFGVEI   78 (305)
T ss_pred             CceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCc-CCccccce-eecCCCCCccCCchHHHHHHHHHHHhhcCeEE
Confidence            357899999999999999999975 888 666666533 32111111 110  11111     1111111111  26677


Q ss_pred             EEeEEEEeecc----EEEecCCeEEEecEEEEecCCCCCCCCchH------HHHHHHHHHHHHHhcCCeEEEEcCchhHH
Q 017664           83 VVSTAVSITDT----EVVTAGGQTFVYDYVVVATGHVESVPKSRT------ERLSQYEKDFEKVKSANSVLIVGGGPTGV  152 (368)
Q Consensus        83 ~~~~~~~~~~~----~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~------~~~~~~~~~~~~~~~~~~v~VvG~g~~~~  152 (368)
                      +...+..++..    .|.+.++. +++++||||||..+..|+.+.      ..+..+..+.. ++++++++|+|+|++++
T Consensus        79 ~~~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAv  156 (305)
T COG0492          79 VEDEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG-FFKGKDVVVIGGGDSAV  156 (305)
T ss_pred             EEEEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCc-cccCCeEEEEcCCHHHH
Confidence            77777777643    56777776 999999999999966665431      22333344444 67789999999999999


Q ss_pred             HHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcC-CcEEEecceeeecccCC-CeEEcCC--C--cEEecC
Q 017664          153 ELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSK-KVEVILNQSVTLNTISD-GLIETSS--G--ETIDTD  226 (368)
Q Consensus       153 e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~-~~v~~~~--g--~~i~~d  226 (368)
                      |.|..|.+  .+.+|++++|++.+-      ....+.+.++++ +|++++++.+.++..++ ..+++.+  +  +.+++|
T Consensus       157 e~Al~L~~--~a~~Vtlv~r~~~~r------a~~~~~~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~  228 (305)
T COG0492         157 EEALYLSK--IAKKVTLVHRRDEFR------AEEILVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVD  228 (305)
T ss_pred             HHHHHHHH--hcCeEEEEecCcccC------cCHHHHHHHHhcCCeEEEeCCceeEEecCccceEEEEecCCceEEEEec
Confidence            99999995  477899999998863      255667777766 89999999999988765 3455444  3  378999


Q ss_pred             EEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcC
Q 017664          227 CHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMG  305 (368)
Q Consensus       227 ~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g  305 (368)
                      .++++.|..|+.+++.....   ++++|+|.+|+.++| |.|+|||+||++..+. +++..|..+|..||.++.++|..
T Consensus       229 gvf~~iG~~p~~~~~~~~~~---~~~~g~I~v~~~~~T-svpGifAaGDv~~~~~-rqi~ta~~~G~~Aa~~a~~~l~~  302 (305)
T COG0492         229 GVFIAIGHLPNTELLKGLGV---LDENGYIVVDEEMET-SVPGIFAAGDVADKNG-RQIATAAGDGAIAALSAERYLES  302 (305)
T ss_pred             eEEEecCCCCchHHHhhccc---cCCCCcEEcCCCccc-CCCCEEEeEeeccCcc-cEEeehhhhHHHHHHHHHHHhhh
Confidence            99999999999998887654   688999999999999 8999999999998753 47889999999999999988754

>PRK12831 putative oxidoreductase; Provisional

Probab=100.00  E-value=7.9e-34  Score=269.61  Aligned_cols=279  Identities=19%  Similarity=0.177  Sum_probs=188.3

Q ss_pred             cCCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeecc-ceeeeeccccccc-ceeeccccc--CceeEEEe
Q 017664           11 AGLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWA-SLRAVVEPSFAVR-SVINHGDYL--SNVKIVVS   85 (368)
Q Consensus        11 ~~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~   85 (368)
                      +...+.+||+|||||||||+||.+|+ +|++|+|+|+++..|+.+. .+...   .++.+ ......+++  .++++...
T Consensus       135 ~~~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~---~l~~~~~~~~~~~~~~~~gv~i~~~  211 (464)
T PRK12831        135 TEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEF---RLPKETVVKKEIENIKKLGVKIETN  211 (464)
T ss_pred             CcCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCc---cCCccHHHHHHHHHHHHcCCEEEcC
Confidence            44556789999999999999999998 4999999999887653321 11110   11111 111111111  14555544


Q ss_pred             EEEEeeccEEEecCC-eEEEecEEEEecCC-CCCC---CCchHHHHHHHHHHHHH--------------HhcCCeEEEEc
Q 017664           86 TAVSITDTEVVTAGG-QTFVYDYVVVATGH-VESV---PKSRTERLSQYEKDFEK--------------VKSANSVLIVG  146 (368)
Q Consensus        86 ~~~~~~~~~v~~~~g-~~~~~d~lvlAtG~-~~~~---p~~~~~~~~~~~~~~~~--------------~~~~~~v~VvG  146 (368)
                      ..+.   +.+...+. ..+.||+||||||+ .|..   |+.+..++.+...+...              ...+++|+|||
T Consensus       212 ~~v~---~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIG  288 (464)
T PRK12831        212 VVVG---KTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVG  288 (464)
T ss_pred             CEEC---CcCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEEC
Confidence            4221   22222222 23569999999998 4554   44333333222222211              23579999999


Q ss_pred             CchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccC-CC---eEEcC----
Q 017664          147 GGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTIS-DG---LIETS----  218 (368)
Q Consensus       147 ~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~-~~---~v~~~----  218 (368)
                      +|++|+|+|..+.+  .+.+|+++++....  .++.. ... .+.+++.||++++++.+.++..+ ++   .+++.    
T Consensus       289 gG~va~d~A~~l~r--~Ga~Vtlv~r~~~~--~m~a~-~~e-~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~  362 (464)
T PRK12831        289 GGNVAMDAARTALR--LGAEVHIVYRRSEE--ELPAR-VEE-VHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMEL  362 (464)
T ss_pred             CcHHHHHHHHHHHH--cCCEEEEEeecCcc--cCCCC-HHH-HHHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEe
Confidence            99999999999885  47789999986531  12211 122 23467789999999998888653 33   12221    


Q ss_pred             --------------CC--cEEecCEEEEccCCCCCchhhhc-cccccccCCCCcEEeCCC-eeecCCCCeEEecccCCCC
Q 017664          219 --------------SG--ETIDTDCHFMCTGKAMASSWLRE-TILKDSLDGRGRLMVDEN-LRVRGFKNVFAIGDITDIP  280 (368)
Q Consensus       219 --------------~g--~~i~~d~vi~a~G~~p~~~~~~~-~~l~~~~~~~g~i~vd~~-~~~~~~~~ifa~GD~~~~~  280 (368)
                                    +|  .++++|.||+|+|+.|+..++.. .++  .++++|++.||++ ++| +.|+|||+|||+..+
T Consensus       363 ~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl--~~~~~G~i~vd~~~~~T-s~pgVfAaGD~~~g~  439 (464)
T PRK12831        363 GEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGL--KINKRGCIVADEETGLT-SKEGVFAGGDAVTGA  439 (464)
T ss_pred             cCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCc--eECCCCcEEECCCCCcc-CCCCEEEeCCCCCCc
Confidence                          22  26999999999999999877765 344  5677899999998 888 899999999998754


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHcCC
Q 017664          281 EIKQGYLAQKHALVTAKNLKKLMMGR  306 (368)
Q Consensus       281 ~~~~~~~a~~~g~~aa~~i~~~l~g~  306 (368)
                      .  +...|+.+|+.||.+|.++|.++
T Consensus       440 ~--~v~~Ai~~G~~AA~~I~~~L~~~  463 (464)
T PRK12831        440 A--TVILAMGAGKKAAKAIDEYLSKK  463 (464)
T ss_pred             h--HHHHHHHHHHHHHHHHHHHhcCC
Confidence            3  78899999999999999998764

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=100.00  E-value=2.6e-33  Score=271.95  Aligned_cols=280  Identities=20%  Similarity=0.238  Sum_probs=193.9

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceee---eecc-ccc-ccceeeccccc--CceeEEE
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRA---VVEP-SFA-VRSVINHGDYL--SNVKIVV   84 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~---~~~~-~~~-~~~~~~~~~~~--~~~~~~~   84 (368)
                      |.+.+||+|||||||||+||.+|+ +|++|+|+|+++ +++.......   .... ... ........+..  .+++++.
T Consensus         1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~~   79 (555)
T TIGR03143         1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFLQ   79 (555)
T ss_pred             CCCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEec
Confidence            455799999999999999999997 599999999975 4432211110   0000 000 00001111111  1567777


Q ss_pred             eEEEEeecc----EEEecCCeEEEecEEEEecCCCCCCCCchHHHHH------HHHHHHHHHhcCCeEEEEcCchhHHHH
Q 017664           85 STAVSITDT----EVVTAGGQTFVYDYVVVATGHVESVPKSRTERLS------QYEKDFEKVKSANSVLIVGGGPTGVEL  154 (368)
Q Consensus        85 ~~~~~~~~~----~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~~~~~------~~~~~~~~~~~~~~v~VvG~g~~~~e~  154 (368)
                      ..+..++..    .+.+.++ .+.+++||+|||+.|..|++++....      .+.........+++++|||+|++|+|+
T Consensus        80 ~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~  158 (555)
T TIGR03143        80 AEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEE  158 (555)
T ss_pred             cEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCCCCCCCHHHhCCceEEEEeecChhhcCCCEEEEECCCHHHHHH
Confidence            777777642    3555444 58899999999999877766543211      111112233468999999999999999


Q ss_pred             HHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEE---cCCCcEE----ec
Q 017664          155 AGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIE---TSSGETI----DT  225 (368)
Q Consensus       155 a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~---~~~g~~i----~~  225 (368)
                      |..|.+  .+.+|+++++.+.+..  .   .....+.++..||++++++.|.++..++.  .+.   ..+|++.    ++
T Consensus       159 A~~L~~--~g~~Vtli~~~~~~~~--~---~~~~~~~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~  231 (555)
T TIGR03143       159 AVFLTR--YASKVTVIVREPDFTC--A---KLIAEKVKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPK  231 (555)
T ss_pred             HHHHHc--cCCEEEEEEeCCcccc--C---HHHHHHHHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccc
Confidence            999874  5889999999876521  1   12223334567999999999998875543  222   3456533    36


Q ss_pred             CE----EEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHH
Q 017664          226 DC----HFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKK  301 (368)
Q Consensus       226 d~----vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~  301 (368)
                      |.    +++++|++|+.+++.. .+  .++++|++.||+++|| +.|||||+|||+... +.....|..||+.||.+|.+
T Consensus       232 D~~~~~Vi~a~G~~Pn~~l~~~-~l--~l~~~G~I~vd~~~~T-s~p~IyAaGDv~~~~-~~~v~~A~~~G~~Aa~~i~~  306 (555)
T TIGR03143       232 DAGTFGVFVFVGYAPSSELFKG-VV--ELDKRGYIPTNEDMET-NVPGVYAAGDLRPKE-LRQVVTAVADGAIAATSAER  306 (555)
T ss_pred             cccceEEEEEeCCCCChhHHhh-hc--ccCCCCeEEeCCcccc-CCCCEEEceeccCCC-cchheeHHhhHHHHHHHHHH
Confidence            76    9999999999988765 33  6778899999999999 899999999998542 33567899999999999999


Q ss_pred             HHcCC
Q 017664          302 LMMGR  306 (368)
Q Consensus       302 ~l~g~  306 (368)
                      +|.+.
T Consensus       307 ~l~~~  311 (555)
T TIGR03143       307 YVKEL  311 (555)
T ss_pred             HHHhh
Confidence            88654

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=100.00  E-value=3.3e-33  Score=257.74  Aligned_cols=286  Identities=20%  Similarity=0.168  Sum_probs=193.1

Q ss_pred             eeccCCcCCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccc-eeeeeccccccccee-eccccc-Cce
Q 017664            5 LWGSTAAGLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWAS-LRAVVEPSFAVRSVI-NHGDYL-SNV   80 (368)
Q Consensus         5 ~~~~~~~~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~-~~~   80 (368)
                      .|+++.+.+...++|+|||+|++|+++|..|+ +|++|+++|+.+.++..+.. ....   ....+... ....+. .++
T Consensus         7 ~~~~~~~~~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~---~~~~~~~~~~~~~l~~~~i   83 (352)
T PRK12770          7 AFMCKEKPPPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEF---RIPIERVREGVKELEEAGV   83 (352)
T ss_pred             hhhcccCCCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCccc---ccCHHHHHHHHHHHHhCCe
Confidence            67887777777889999999999999999997 59999999999876533211 1100   00001000 001111 145


Q ss_pred             eEEEeEEEEee-c------c-----EEEecCCeEEEecEEEEecCCC-CCC---CCchHHHHHHHHHHHHH---------
Q 017664           81 KIVVSTAVSIT-D------T-----EVVTAGGQTFVYDYVVVATGHV-ESV---PKSRTERLSQYEKDFEK---------  135 (368)
Q Consensus        81 ~~~~~~~~~~~-~------~-----~v~~~~g~~~~~d~lvlAtG~~-~~~---p~~~~~~~~~~~~~~~~---------  135 (368)
                      ++.....+..+ .      .     .+.. ++..+.||+||||||+. |..   |+.+...+.+.......         
T Consensus        84 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~~~~~~~~~~~~~~~~~  162 (352)
T PRK12770         84 VFHTRTKVCCGEPLHEEEGDEFVERIVSL-EELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGYL  162 (352)
T ss_pred             EEecCcEEeeccccccccccccccccCCH-HHHHhhCCEEEEEeCCCCCCcCCCCCccccCceeHHHHHHHhhhcccccc
Confidence            55444333211 1      0     1111 12246899999999994 544   44332222222111110         


Q ss_pred             ------HhcCCeEEEEcCchhHHHHHHHHhhhCCCCe-EEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeec
Q 017664          136 ------VKSANSVLIVGGGPTGVELAGEIAVDFPDKK-VILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLN  208 (368)
Q Consensus       136 ------~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~-v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  208 (368)
                            ...+++++|+|+|++|+|+|..+.+  .+.+ |+++++.+...    ........+.|+++||++++++.+.++
T Consensus       163 ~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~--~g~~~Vtvi~~~~~~~----~~~~~~~~~~l~~~gi~i~~~~~v~~i  236 (352)
T PRK12770        163 PWEKVPPVEGKKVVVVGAGLTAVDAALEAVL--LGAEKVYLAYRRTINE----APAGKYEIERLIARGVEFLELVTPVRI  236 (352)
T ss_pred             ccccccccCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeecchhh----CCCCHHHHHHHHHcCCEEeeccCceee
Confidence                  1125899999999999999999875  3554 99998765421    122244566799999999999998888


Q ss_pred             ccCCC--eEE--------------------cCCCcEEecCEEEEccCCCCCchhhhc-cccccccCCCCcEEeCCCeeec
Q 017664          209 TISDG--LIE--------------------TSSGETIDTDCHFMCTGKAMASSWLRE-TILKDSLDGRGRLMVDENLRVR  265 (368)
Q Consensus       209 ~~~~~--~v~--------------------~~~g~~i~~d~vi~a~G~~p~~~~~~~-~~l~~~~~~~g~i~vd~~~~~~  265 (368)
                      +.++.  .++                    ..+++++++|.+|+++|++|+..+..+ .++  .++++|++.||+++++ 
T Consensus       237 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~--~~~~~g~i~vd~~~~t-  313 (352)
T PRK12770        237 IGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGI--ELNRKGEIVVDEKHMT-  313 (352)
T ss_pred             ecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCc--eecCCCcEeeCCCccc-
Confidence            75543  222                    123358999999999999999877655 333  5677899999999998 


Q ss_pred             CCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcC
Q 017664          266 GFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMG  305 (368)
Q Consensus       266 ~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g  305 (368)
                      +.|+||++|||+..+.  .+..|++||+.||.+|.+.|.+
T Consensus       314 ~~~~vyaiGD~~~~~~--~~~~A~~~g~~aa~~i~~~l~~  351 (352)
T PRK12770        314 SREGVFAAGDVVTGPS--KIGKAIKSGLRAAQSIHEWLDL  351 (352)
T ss_pred             CCCCEEEEcccccCcc--hHHHHHHHHHHHHHHHHHHHhc
Confidence            7999999999997543  7889999999999999998864

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=100.00  E-value=1e-33  Score=272.92  Aligned_cols=276  Identities=21%  Similarity=0.291  Sum_probs=195.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccc---eeeeeccc-ccc-cceeeccccc--CceeEEE-
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWAS---LRAVVEPS-FAV-RSVINHGDYL--SNVKIVV-   84 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~---~~~~~~~~-~~~-~~~~~~~~~~--~~~~~~~-   84 (368)
                      ...+||+||||||||++||.+|++ |++|+|+++.  +|+.+..   +....... ... +......+++  .++++.. 
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~  287 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMEN  287 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcC
Confidence            446899999999999999999985 9999999853  4433211   10110000 000 0000111111  1456544 


Q ss_pred             eEEEEeecc----EEEecCCeEEEecEEEEecCCCCCCCCchHHHH------HHHHHHHHHHhcCCeEEEEcCchhHHHH
Q 017664           85 STAVSITDT----EVVTAGGQTFVYDYVVVATGHVESVPKSRTERL------SQYEKDFEKVKSANSVLIVGGGPTGVEL  154 (368)
Q Consensus        85 ~~~~~~~~~----~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~~~~------~~~~~~~~~~~~~~~v~VvG~g~~~~e~  154 (368)
                      .++..++..    .+.+.++..+.||++|+|||+.|..|++++..-      ............+++++|||+|++|+|+
T Consensus       288 ~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~  367 (515)
T TIGR03140       288 QRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEA  367 (515)
T ss_pred             CEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCCCCCCCHHHcCCCeEEEeeccChhhcCCCEEEEECCcHHHHHH
Confidence            356655432    566667888999999999999976665543211      0011111223457899999999999999


Q ss_pred             HHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHc-CCcEEEecceeeecccCCC---eEEcCC---C--cEEec
Q 017664          155 AGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTS-KKVEVILNQSVTLNTISDG---LIETSS---G--ETIDT  225 (368)
Q Consensus       155 a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~---~v~~~~---g--~~i~~  225 (368)
                      |..|+.  .+.+|+++++.+.+.      ....+.+.+++ .||++++++.+.+++.+++   .+.+.+   +  +++++
T Consensus       368 A~~L~~--~g~~Vtli~~~~~l~------~~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~  439 (515)
T TIGR03140       368 AIDLAG--IVRHVTVLEFADELK------ADKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDL  439 (515)
T ss_pred             HHHHHh--cCcEEEEEEeCCcCC------hhHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEc
Confidence            999984  578999999877653      23456677776 6999999999998876644   354432   2  47999


Q ss_pred             CEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHc
Q 017664          226 DCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMM  304 (368)
Q Consensus       226 d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~  304 (368)
                      |.+++++|.+|+++++... +  .++++|+|.||+++|| +.|||||+|||+..+. ++...|+.+|..||.+|.++|.
T Consensus       440 D~vi~a~G~~Pn~~~l~~~-~--~~~~~G~I~vd~~~~T-s~p~IyAaGDv~~~~~-~~~~~A~~~G~~Aa~~i~~~~~  513 (515)
T TIGR03140       440 DGVFVQIGLVPNTEWLKDA-V--ELNRRGEIVIDERGRT-SVPGIFAAGDVTTVPY-KQIIIAMGEGAKAALSAFDYLI  513 (515)
T ss_pred             CEEEEEeCCcCCchHHhhh-c--ccCCCCeEEECCCCCC-CCCCEEEcccccCCcc-ceEEEEEccHHHHHHHHHHHHh
Confidence            9999999999999988754 3  6677899999999998 8999999999998643 3567899999999999998764

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=100.00  E-value=2e-32  Score=246.47  Aligned_cols=277  Identities=23%  Similarity=0.384  Sum_probs=219.2

Q ss_pred             CCcEEEECCChHHHHHHHHhhc---CCcEEEEcCCCceeeeccceeeee---cccccccceeecccccCceeEEE-eEEE
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYFEITWASLRAVV---EPSFAVRSVINHGDYLSNVKIVV-STAV   88 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~   88 (368)
                      ...++|||+|++|..|+..++.   -.+++++-++.++.+....+....   ...+..+....++++  +++++. ..++
T Consensus        74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~--gIe~~~~t~v~  151 (478)
T KOG1336|consen   74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTVGEGLAKRTPEFYKEK--GIELILGTSVV  151 (478)
T ss_pred             cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeeccccccccChhhHhhc--CceEEEcceeE
Confidence            5789999999999999999984   468999998888877765544332   333322222223332  566543 3455


Q ss_pred             Ee--eccEEEecCCeEEEecEEEEecCCC---CCCCCchHH------HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHH
Q 017664           89 SI--TDTEVVTAGGQTFVYDYVVVATGHV---ESVPKSRTE------RLSQYEKDFEKVKSANSVLIVGGGPTGVELAGE  157 (368)
Q Consensus        89 ~~--~~~~v~~~~g~~~~~d~lvlAtG~~---~~~p~~~~~------~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~  157 (368)
                      .+  ..+++++.+|+.++|++|+||||+.   +.+|+...+      .+.+...........++++++|+|.+|+|+|..
T Consensus       152 ~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~  231 (478)
T KOG1336|consen  152 KADLASKTLVLGNGETLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAA  231 (478)
T ss_pred             EeeccccEEEeCCCceeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHH
Confidence            44  4679999999999999999999996   555654433      345555555556668899999999999999999


Q ss_pred             HhhhCCCCeEEEEecCccccc-ccCchhHHHHHHHHHcCCcEEEecceeeecccCC-C---eEEcCCCcEEecCEEEEcc
Q 017664          158 IAVDFPDKKVILVHRGPKLLE-FVGSRASQIALDWLTSKKVEVILNQSVTLNTISD-G---LIETSSGETIDTDCHFMCT  232 (368)
Q Consensus       158 l~~~~~~~~v~~i~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~---~v~~~~g~~i~~d~vi~a~  232 (368)
                      |..  .+.+|+++++.+..++ .+.+.+.+.++++++++||++++++.+.+++.+. +   .|.+.+|+++++|.+++.+
T Consensus       232 l~~--~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~Gi  309 (478)
T KOG1336|consen  232 LVS--KAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGI  309 (478)
T ss_pred             HHh--cCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEee
Confidence            985  4889999999998887 6778899999999999999999999999888765 3   6889999999999999999


Q ss_pred             CCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccc--------hHHHHHHHHHHHHHHHH
Q 017664          233 GKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIK--------QGYLAQKHALVTAKNLK  300 (368)
Q Consensus       233 G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~--------~~~~a~~~g~~aa~~i~  300 (368)
                      |.+|++++++. +.  ..+++|+|.||++||+ +.|||||+||++..|.+.        -...|+.+|+.+...|.
T Consensus       310 G~~p~t~~~~~-g~--~~~~~G~i~V~~~f~t-~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~  381 (478)
T KOG1336|consen  310 GIKPNTSFLEK-GI--LLDSKGGIKVDEFFQT-SVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAIK  381 (478)
T ss_pred             ccccccccccc-cc--eecccCCEeehhceee-ccCCcccccceeecccccccccccchHHHHHHHHHHhhhhhhh
Confidence            99999999886 32  5688999999999999 799999999999887532        23467788887776665

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=100.00  E-value=1.7e-32  Score=273.30  Aligned_cols=272  Identities=22%  Similarity=0.232  Sum_probs=186.8

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecc-cccccceeeccccc--CceeEEEeEEEE
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEP-SFAVRSVINHGDYL--SNVKIVVSTAVS   89 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~   89 (368)
                      .+.++|+||||||||++||++|+ +|++|+|+|+++..|+...   ..+.. .++.+.+....+++  .++++..+..+.
T Consensus       537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr---~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~Vd  613 (1019)
T PRK09853        537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVK---NIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSPD  613 (1019)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCccee---eecccccccHHHHHHHHHHHHHcCCEEEeCceeE
Confidence            45789999999999999999998 5999999999988764322   11110 11111111111111  156665554332


Q ss_pred             eeccEEEecCCeEEEecEEEEecCCCC-CCCCchHH--HHHHHHHH-------HHHHhcCCeEEEEcCchhHHHHHHHHh
Q 017664           90 ITDTEVVTAGGQTFVYDYVVVATGHVE-SVPKSRTE--RLSQYEKD-------FEKVKSANSVLIVGGGPTGVELAGEIA  159 (368)
Q Consensus        90 ~~~~~v~~~~g~~~~~d~lvlAtG~~~-~~p~~~~~--~~~~~~~~-------~~~~~~~~~v~VvG~g~~~~e~a~~l~  159 (368)
                           +...+.+...||+||||||+.+ ..+++++.  .+.+....       ......+++|+|||+|++|+|+|..+.
T Consensus       614 -----i~le~L~~~gYDaVILATGA~~~~~l~IpG~~~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~  688 (1019)
T PRK09853        614 -----LTVEQLKNEGYDYVVVAIGADKNGGLKLEGGNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAAL  688 (1019)
T ss_pred             -----EEhhhheeccCCEEEECcCCCCCCCCCCCCccCCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHH
Confidence                 2233445567999999999983 32232211  12111111       122345899999999999999998877


Q ss_pred             hhCCC-CeEEEEecCcc-cccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC------------------eEEcCC
Q 017664          160 VDFPD-KKVILVHRGPK-LLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG------------------LIETSS  219 (368)
Q Consensus       160 ~~~~~-~~v~~i~~~~~-~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~------------------~v~~~~  219 (368)
                      + ..+ .+|++++|++. .++.    ....+.+.+ +.||++++++.+.++..++.                  .+.+.+
T Consensus       689 R-lgGakeVTLVyRr~~~~MPA----~~eEle~Al-eeGVe~~~~~~p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~  762 (1019)
T PRK09853        689 R-VPGVEKVTVVYRRTKQEMPA----WREEYEEAL-EDGVEFKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGE  762 (1019)
T ss_pred             h-cCCCceEEEEEccCcccccc----cHHHHHHHH-HcCCEEEeCCceEEEEcCCcEEEEEEEeecccCCCceEEeeCCC
Confidence            4 334 58999998763 3332    233344443 46999999988887753221                  122334


Q ss_pred             CcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHH
Q 017664          220 GETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNL  299 (368)
Q Consensus       220 g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i  299 (368)
                      ++++++|.||+|+|..|+.+++...++  .++++|++.||+++|| +.|+|||+|||+..|.  ++..|+.+|+.||++|
T Consensus       763 ~~~I~aD~VIvAIG~~Pntelle~~GL--~ld~~G~I~VDetlqT-s~pgVFAaGD~a~Gp~--tvv~Ai~qGr~AA~nI  837 (1019)
T PRK09853        763 TVTLEADTVITAIGEQVDTELLKANGI--PLDKKGWPVVDANGET-SLTNVYMIGDVQRGPS--TIVAAIADARRAADAI  837 (1019)
T ss_pred             eEEEEeCEEEECCCCcCChhHHHhcCc--cccCCCCEEeCCCccc-CCCCEEEEeccccCch--HHHHHHHHHHHHHHHH
Confidence            468999999999999999998876655  5677899999999998 8999999999997554  7889999999999999


Q ss_pred             HHHHc
Q 017664          300 KKLMM  304 (368)
Q Consensus       300 ~~~l~  304 (368)
                      .+.+.
T Consensus       838 ~~~~~  842 (1019)
T PRK09853        838 LSREG  842 (1019)
T ss_pred             hhhcC
Confidence            98664

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=100.00  E-value=1.1e-32  Score=262.70  Aligned_cols=278  Identities=20%  Similarity=0.191  Sum_probs=188.2

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccc-eeeeecccccccceeeccccc--CceeEEEeEEE
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWAS-LRAVVEPSFAVRSVINHGDYL--SNVKIVVSTAV   88 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~   88 (368)
                      ..+.++|+|||||||||++|..|+ +|++|+|+|+++.++..+.. ....   ....+......+++  .++++.....+
T Consensus       137 ~~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~---~~~~~~~~~~~~~l~~~gv~~~~~~~v  213 (457)
T PRK11749        137 PKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEF---RLPKDIVDREVERLLKLGVEIRTNTEV  213 (457)
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCc---cCCHHHHHHHHHHHHHcCCEEEeCCEE
Confidence            345689999999999999999998 59999999999876533211 1000   00111111111111  14555544432


Q ss_pred             EeeccEEEecCCeEEEecEEEEecCCC-CCC---CCchHHHHHHHHHHHHH---------HhcCCeEEEEcCchhHHHHH
Q 017664           89 SITDTEVVTAGGQTFVYDYVVVATGHV-ESV---PKSRTERLSQYEKDFEK---------VKSANSVLIVGGGPTGVELA  155 (368)
Q Consensus        89 ~~~~~~v~~~~g~~~~~d~lvlAtG~~-~~~---p~~~~~~~~~~~~~~~~---------~~~~~~v~VvG~g~~~~e~a  155 (368)
                      .   ..+.+.+. .+.||+||+|||+. |..   |+.+..++.+.......         ...+++++|||+|++|+|+|
T Consensus       214 ~---~~v~~~~~-~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A  289 (457)
T PRK11749        214 G---RDITLDEL-RAGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAA  289 (457)
T ss_pred             C---CccCHHHH-HhhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHH
Confidence            1   12222222 27899999999996 443   44332222222221111         23579999999999999999


Q ss_pred             HHHhhhCCCCeEEEEecCccc-ccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEc--------------
Q 017664          156 GEIAVDFPDKKVILVHRGPKL-LEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIET--------------  217 (368)
Q Consensus       156 ~~l~~~~~~~~v~~i~~~~~~-l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~--------------  217 (368)
                      ..+.+ ....+|+++++.... ++.     .....+.+++.||++++++.+.++..+++   .+.+              
T Consensus       290 ~~l~~-~G~~~Vtlv~~~~~~~~~~-----~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~  363 (457)
T PRK11749        290 RTAKR-LGAESVTIVYRRGREEMPA-----SEEEVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRR  363 (457)
T ss_pred             HHHHH-cCCCeEEEeeecCcccCCC-----CHHHHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCc
Confidence            99874 233489999986542 221     22345678889999999999988875543   2332              


Q ss_pred             -----CCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCC-CeeecCCCCeEEecccCCCCccchHHHHHHH
Q 017664          218 -----SSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDE-NLRVRGFKNVFAIGDITDIPEIKQGYLAQKH  291 (368)
Q Consensus       218 -----~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~-~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~  291 (368)
                           .+++++++|.||+++|++|+..++.. ..++.++++|++.||+ +++| +.|+|||+|||+..  ++++..|+.|
T Consensus       364 ~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~-~~gl~~~~~g~i~vd~~~~~T-s~~~VfA~GD~~~~--~~~~~~A~~~  439 (457)
T PRK11749        364 RVPIEGSEFTLPADLVIKAIGQTPNPLILST-TPGLELNRWGTIIADDETGRT-SLPGVFAGGDIVTG--AATVVWAVGD  439 (457)
T ss_pred             ccCCCCceEEEECCEEEECccCCCCchhhcc-ccCccCCCCCCEEeCCCCCcc-CCCCEEEeCCcCCC--chHHHHHHHH
Confidence                 13347999999999999999766542 2233567889999998 7777 89999999999964  3478899999


Q ss_pred             HHHHHHHHHHHHcCCC
Q 017664          292 ALVTAKNLKKLMMGRN  307 (368)
Q Consensus       292 g~~aa~~i~~~l~g~~  307 (368)
                      |+.||.+|.+.|.|+.
T Consensus       440 G~~aA~~I~~~l~g~~  455 (457)
T PRK11749        440 GKDAAEAIHEYLEGAA  455 (457)
T ss_pred             HHHHHHHHHHHHhccc
Confidence            9999999999998753

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=100.00  E-value=8e-33  Score=267.07  Aligned_cols=278  Identities=23%  Similarity=0.276  Sum_probs=197.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeecccee---eeecc-cccc-cceeeccccc--CceeEEE-
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLR---AVVEP-SFAV-RSVINHGDYL--SNVKIVV-   84 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~---~~~~~-~~~~-~~~~~~~~~~--~~~~~~~-   84 (368)
                      ...+|++||||||||++||.+|+ .|++|+|+++.  +|+.+....   ..... .... +......+..  .++++.. 
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~  286 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNL  286 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcC
Confidence            34689999999999999999997 59999999864  443332110   00000 0000 0000111111  1455543 


Q ss_pred             eEEEEeecc----EEEecCCeEEEecEEEEecCCCCCCCCchHHH-H-----HHHHHHHHHHhcCCeEEEEcCchhHHHH
Q 017664           85 STAVSITDT----EVVTAGGQTFVYDYVVVATGHVESVPKSRTER-L-----SQYEKDFEKVKSANSVLIVGGGPTGVEL  154 (368)
Q Consensus        85 ~~~~~~~~~----~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~~~-~-----~~~~~~~~~~~~~~~v~VvG~g~~~~e~  154 (368)
                      .++..++..    .+.+.++..+.||+||+|||+.|..|+++... +     ............+++++|||+|++|+|+
T Consensus       287 ~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~  366 (517)
T PRK15317        287 QRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEA  366 (517)
T ss_pred             CEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeeccCchhcCCCEEEEECCCHHHHHH
Confidence            356666532    56667788899999999999997666544221 1     0011112223468999999999999999


Q ss_pred             HHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHc-CCcEEEecceeeecccCCC---eEEcC---CC--cEEec
Q 017664          155 AGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTS-KKVEVILNQSVTLNTISDG---LIETS---SG--ETIDT  225 (368)
Q Consensus       155 a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~---~v~~~---~g--~~i~~  225 (368)
                      |..|..  .+.+|+++++.+.+..      ...+.+.+++ .||++++++.+.+++.+++   .+.+.   +|  +++++
T Consensus       367 A~~L~~--~~~~Vtlv~~~~~l~~------~~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~  438 (517)
T PRK15317        367 AIDLAG--IVKHVTVLEFAPELKA------DQVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLEL  438 (517)
T ss_pred             HHHHHh--cCCEEEEEEECccccc------cHHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEc
Confidence            999984  5789999998876532      2445666665 6999999999999887644   24433   33  36999


Q ss_pred             CEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcC
Q 017664          226 DCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMG  305 (368)
Q Consensus       226 d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g  305 (368)
                      |.+++++|.+|+++++... +  .++++|++.||+++|| +.|||||+|||+..+ .++...|+.+|..||.++..+|..
T Consensus       439 D~v~~~~G~~p~~~~l~~~-v--~~~~~g~i~vd~~l~T-s~p~IyAaGDv~~~~-~k~~~~A~~eG~~Aa~~~~~~l~~  513 (517)
T PRK15317        439 EGVFVQIGLVPNTEWLKGT-V--ELNRRGEIIVDARGAT-SVPGVFAAGDCTTVP-YKQIIIAMGEGAKAALSAFDYLIR  513 (517)
T ss_pred             CEEEEeECCccCchHHhhh-e--eeCCCCcEEECcCCCC-CCCCEEECccccCCC-CCEEEEhhhhHHHHHHHHHHHHhh
Confidence            9999999999999998765 3  6778899999999998 899999999999864 356889999999999999998865


Q ss_pred             C
Q 017664          306 R  306 (368)
Q Consensus       306 ~  306 (368)
                      .
T Consensus       514 ~  514 (517)
T PRK15317        514 N  514 (517)
T ss_pred             c
Confidence            4

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=100.00  E-value=3.4e-32  Score=273.26  Aligned_cols=278  Identities=18%  Similarity=0.197  Sum_probs=186.5

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeecc-ceeeeecccccccceeeccccc--CceeEEEeEEE
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWA-SLRAVVEPSFAVRSVINHGDYL--SNVKIVVSTAV   88 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~   88 (368)
                      ..+.++|+|||||||||+||.+|+ +|++|+|+|+.+.+|+... .+...   .++........+++  .++++.....+
T Consensus       428 ~~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~---rlp~~~~~~~~~~l~~~gv~~~~~~~v  504 (752)
T PRK12778        428 EKNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEF---RLPKKIVDVEIENLKKLGVKFETDVIV  504 (752)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCC---CCCHHHHHHHHHHHHHCCCEEECCCEE
Confidence            446789999999999999999998 5999999999876653321 11100   11111111111111  15666544332


Q ss_pred             EeeccEEEecCCeEEEecEEEEecCCC-CCCCCch---HHHHHHHHHHHHH--------------HhcCCeEEEEcCchh
Q 017664           89 SITDTEVVTAGGQTFVYDYVVVATGHV-ESVPKSR---TERLSQYEKDFEK--------------VKSANSVLIVGGGPT  150 (368)
Q Consensus        89 ~~~~~~v~~~~g~~~~~d~lvlAtG~~-~~~p~~~---~~~~~~~~~~~~~--------------~~~~~~v~VvG~g~~  150 (368)
                         .+.+.+.+.....||+||||||+. |..|+++   ..++.+...+...              ...+++|+|||+|++
T Consensus       505 ---~~~v~~~~l~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~  581 (752)
T PRK12778        505 ---GKTITIEELEEEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNT  581 (752)
T ss_pred             ---CCcCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHH
Confidence               123334344456799999999994 5544433   2222222221111              234689999999999


Q ss_pred             HHHHHHHHhhhCCCCe-EEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCC-C---eEEcC-------
Q 017664          151 GVELAGEIAVDFPDKK-VILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISD-G---LIETS-------  218 (368)
Q Consensus       151 ~~e~a~~l~~~~~~~~-v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~---~v~~~-------  218 (368)
                      |+|+|..+.+  .+.+ |+++++++..  .++.. .. ..+.+++.||++++++.+.++..++ +   .+++.       
T Consensus       582 a~d~A~~~~r--~Ga~~Vtlv~r~~~~--~~~~~-~~-e~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~  655 (752)
T PRK12778        582 AMDSARTAKR--LGAERVTIVYRRSEE--EMPAR-LE-EVKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEP  655 (752)
T ss_pred             HHHHHHHHHH--cCCCeEEEeeecCcc--cCCCC-HH-HHHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCc
Confidence            9999998874  4555 9999987541  11211 12 2245778899999999888876433 3   22221       


Q ss_pred             --CC-----------cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchH
Q 017664          219 --SG-----------ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQG  285 (368)
Q Consensus       219 --~g-----------~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~  285 (368)
                        +|           .++++|.||+|+|+.|+..++... .++.++++|++.||++++| +.|+|||+|||+..+  .++
T Consensus       656 ~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~-~gl~~~~~G~i~vd~~~~T-s~~gVfA~GD~~~g~--~~v  731 (752)
T PRK12778        656 DASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSI-PGLELNRKGTIVVDEEMQS-SIPGIYAGGDIVRGG--ATV  731 (752)
T ss_pred             CCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccc-cCceECCCCCEEeCCCCCC-CCCCEEEeCCccCCc--HHH
Confidence              12           269999999999999997665442 1336678899999999987 899999999999754  378


Q ss_pred             HHHHHHHHHHHHHHHHHHcCC
Q 017664          286 YLAQKHALVTAKNLKKLMMGR  306 (368)
Q Consensus       286 ~~a~~~g~~aa~~i~~~l~g~  306 (368)
                      ..|+.+|+.||.+|.++|.++
T Consensus       732 v~Av~~G~~AA~~I~~~L~~~  752 (752)
T PRK12778        732 ILAMGDGKRAAAAIDEYLSSK  752 (752)
T ss_pred             HHHHHHHHHHHHHHHHHhccC
Confidence            899999999999999998763

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=100.00  E-value=4.7e-32  Score=254.83  Aligned_cols=339  Identities=19%  Similarity=0.260  Sum_probs=252.9

Q ss_pred             CCCcEEEECCChHHHHHHHHhh----cCCcEEEEcCCCceeeeccceeeeecc-cccccceeecccccC--ceeEEE-eE
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ----SFADVVLIDEKEYFEITWASLRAVVEP-SFAVRSVINHGDYLS--NVKIVV-ST   86 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~----~g~~v~lie~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~-~~   86 (368)
                      .+.+++|||.|++|..+...+.    .-++|+++-.+++..++...++..+.+ ....+......+|+.  +++++. ..
T Consensus         2 ~k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~   81 (793)
T COG1251           2 KKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEK   81 (793)
T ss_pred             CceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCe
Confidence            4578999999999999998764    268999999999998888888777665 333444555566664  566554 46


Q ss_pred             EEEeec--cEEEecCCeEEEecEEEEecCCCCCCCCch---------HHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHH
Q 017664           87 AVSITD--TEVVTAGGQTFVYDYVVVATGHVESVPKSR---------TERLSQYEKDFEKVKSANSVLIVGGGPTGVELA  155 (368)
Q Consensus        87 ~~~~~~--~~v~~~~g~~~~~d~lvlAtG~~~~~p~~~---------~~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a  155 (368)
                      ++.+|+  +.|++..|.++.||.|++|||+.|++|+++         .+.+.+...+.......++.+|||+|..|+|+|
T Consensus        82 v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA  161 (793)
T COG1251          82 VIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAA  161 (793)
T ss_pred             eEEeccCcceEEccCCcEeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHH
Confidence            788875  488899999999999999999998777654         245666666666655567789999999999999


Q ss_pred             HHHhhhCCCCeEEEEecCccccc-ccCchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEcc
Q 017664          156 GEIAVDFPDKKVILVHRGPKLLE-FVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCT  232 (368)
Q Consensus       156 ~~l~~~~~~~~v~~i~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~  232 (368)
                      ..|.+  .+.++++++-.+.++. .+++.....+++.++++|++++++...+++..++.  .++++||+.+++|.|++|+
T Consensus       162 ~~L~~--~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~  239 (793)
T COG1251         162 RGLKD--LGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAV  239 (793)
T ss_pred             HHHHh--CCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEec
Confidence            99985  6899999988777654 57778888899999999999999998887766444  8999999999999999999


Q ss_pred             CCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCc--cchHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 017664          233 GKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPE--IKQGYLAQKHALVTAKNLKKLMMGRNKGT  310 (368)
Q Consensus       233 G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~--~~~~~~a~~~g~~aa~~i~~~l~g~~~~~  310 (368)
                      |.+|+..+..+.++  ..++  .|.||+++|| +.|+|||+|+|+.+..  ..+...+..|++++|+++.....+.... 
T Consensus       240 GIrPn~ela~~aGl--avnr--GIvvnd~mqT-sdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~~~~~y~g-  313 (793)
T COG1251         240 GIRPNDELAKEAGL--AVNR--GIVVNDYMQT-SDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGEAEAYEG-  313 (793)
T ss_pred             ccccccHhHHhcCc--CcCC--Ceeecccccc-cCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhccCccccccc-
Confidence            99999999999987  4454  6999999999 8999999999998743  2356789999999999998433221110 


Q ss_pred             cccccc--CCCeEEEeecCCcceeEecCccccCccceeeeccccchhHHHHHcCCC
Q 017664          311 MATYKP--GYPIALVSLGRREGVAHFPFLTISGRIPGWIKSRDLFVGKTRKQLGLK  364 (368)
Q Consensus       311 ~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~lG~~  364 (368)
                      ...++-  -+.+-+.+.|..+.-.......+.+...+.+|-  ++.+++ +|+|+-
T Consensus       314 sv~stkLKv~Gvdl~S~GD~~e~~~~~~iv~~D~~~~iYKr--lvL~dd-~Ivgav  366 (793)
T COG1251         314 SVTSTKLKVSGVDVFSAGDFQETEGAESIVFRDEQRGIYKK--LVLKDD-KIVGAV  366 (793)
T ss_pred             ccchhhhcccccceeeccchhhcCCCceEEEecccccceeE--EEEeCC-eEEEEE
Confidence            011110  133444455544311111223355566666665  455543 777653

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=99.98  E-value=3e-31  Score=253.26  Aligned_cols=282  Identities=17%  Similarity=0.185  Sum_probs=185.3

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeecc-ceeeeecccccccceeeccccc--CceeEEEeEEE
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWA-SLRAVVEPSFAVRSVINHGDYL--SNVKIVVSTAV   88 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~   88 (368)
                      ....++|+||||||||+++|..|+ +|++|+|+|+++.++..+. .+...   ...........+++  .++++.....+
T Consensus       140 ~~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~---~~~~~~~~~~~~~~~~~gv~~~~~~~v  216 (471)
T PRK12810        140 KRTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDF---KLEKEVIDRRIELMEAEGIEFRTNVEV  216 (471)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcc---cCCHHHHHHHHHHHHhCCcEEEeCCEE
Confidence            345679999999999999999998 5999999999987763321 11100   01111111111111  15566554443


Q ss_pred             EeeccEEEecCCeEEEecEEEEecCCC-CC---CCCchHHHHHHHHHHHH--------------HHhcCCeEEEEcCchh
Q 017664           89 SITDTEVVTAGGQTFVYDYVVVATGHV-ES---VPKSRTERLSQYEKDFE--------------KVKSANSVLIVGGGPT  150 (368)
Q Consensus        89 ~~~~~~v~~~~g~~~~~d~lvlAtG~~-~~---~p~~~~~~~~~~~~~~~--------------~~~~~~~v~VvG~g~~  150 (368)
                      ..+..   . +.....||+|++|||+. |.   +|+.+..++.....+..              ....+++++|||+|++
T Consensus       217 ~~~~~---~-~~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~  292 (471)
T PRK12810        217 GKDIT---A-EELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDT  292 (471)
T ss_pred             CCcCC---H-HHHHhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHH
Confidence            22210   0 11235799999999997 43   44443333322211111              1234789999999999


Q ss_pred             HHHHHHHHhhhCCCCeEEEEecCccccccc-C----chhH-HHHHHHHHcCCcEEEecceeeecccCCCe---EE-----
Q 017664          151 GVELAGEIAVDFPDKKVILVHRGPKLLEFV-G----SRAS-QIALDWLTSKKVEVILNQSVTLNTISDGL---IE-----  216 (368)
Q Consensus       151 ~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~-~----~~~~-~~~~~~l~~~gv~i~~~~~v~~i~~~~~~---v~-----  216 (368)
                      |+|+|..+.+ ....+|+.++..+...... +    +... ....+.+++.||++++++.+.++..+++.   ++     
T Consensus       293 g~e~A~~~~~-~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~  371 (471)
T PRK12810        293 GMDCVGTAIR-QGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTE  371 (471)
T ss_pred             HHHHHHHHHH-cCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEE
Confidence            9999987764 3345788665543221111 0    0111 11356678889999999999988754442   22     


Q ss_pred             cCCC---------cEEecCEEEEccCCCCCc-hhhhccccccccCCCCcEEeC-CCeeecCCCCeEEecccCCCCccchH
Q 017664          217 TSSG---------ETIDTDCHFMCTGKAMAS-SWLRETILKDSLDGRGRLMVD-ENLRVRGFKNVFAIGDITDIPEIKQG  285 (368)
Q Consensus       217 ~~~g---------~~i~~d~vi~a~G~~p~~-~~~~~~~l~~~~~~~g~i~vd-~~~~~~~~~~ifa~GD~~~~~~~~~~  285 (368)
                      +.+|         +++++|.||+|+|++|+. .++...++  .++++|++.+| ++++| +.|+|||+|||+..+.  +.
T Consensus       372 ~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl--~~~~~g~i~vd~~~~~T-s~~gVfa~GD~~~g~~--~~  446 (471)
T PRK12810        372 LGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGV--ELDERGRVAAPDNAYQT-SNPKVFAAGDMRRGQS--LV  446 (471)
T ss_pred             ecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCc--ccCCCCCEEeCCCcccC-CCCCEEEccccCCCch--hH
Confidence            2222         479999999999999985 46655544  67788999998 68987 8999999999997543  67


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCC
Q 017664          286 YLAQKHALVTAKNLKKLMMGRN  307 (368)
Q Consensus       286 ~~a~~~g~~aa~~i~~~l~g~~  307 (368)
                      ..|+.+|+.||.+|.++|.|+.
T Consensus       447 ~~Av~~G~~AA~~i~~~L~g~~  468 (471)
T PRK12810        447 VWAIAEGRQAARAIDAYLMGST  468 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCC
Confidence            8999999999999999998753

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.98  E-value=3.5e-31  Score=267.86  Aligned_cols=278  Identities=15%  Similarity=0.137  Sum_probs=188.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeec-ccccccceeeccccc--CceeEEEeEEEE
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVE-PSFAVRSVINHGDYL--SNVKIVVSTAVS   89 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~   89 (368)
                      .+.++|+|||||||||+||.+|+ +|++|+|+|+.+.+|+..   +..+. ...+.+.+....+.+  .++++.....+.
T Consensus       304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l---~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG  380 (944)
T PRK12779        304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVL---RYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG  380 (944)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceE---EccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec
Confidence            35789999999999999999998 599999999998776432   11111 111111111111111  256665554332


Q ss_pred             eeccEEEecCCeEEEecEEEEecCCC-CC---CCCchHHHHHHHHHHHHH----------------HhcCCeEEEEcCch
Q 017664           90 ITDTEVVTAGGQTFVYDYVVVATGHV-ES---VPKSRTERLSQYEKDFEK----------------VKSANSVLIVGGGP  149 (368)
Q Consensus        90 ~~~~~v~~~~g~~~~~d~lvlAtG~~-~~---~p~~~~~~~~~~~~~~~~----------------~~~~~~v~VvG~g~  149 (368)
                         +.+.+.+.....||+|+||||+. |.   +|+.+..++.....++..                ...+++|+|||+|+
T Consensus       381 ---~dit~~~l~~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~  457 (944)
T PRK12779        381 ---KTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGN  457 (944)
T ss_pred             ---cEEeHHHhccccCCEEEEeCCCCCCCcCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCH
Confidence               23555555556799999999996 54   444333333222222211                11468999999999


Q ss_pred             hHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCC-C-eE---Ec-------
Q 017664          150 TGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISD-G-LI---ET-------  217 (368)
Q Consensus       150 ~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~-~v---~~-------  217 (368)
                      +|+|+|..+.+  .+.+|+++++++..  .++ .....+.. ..+.||++++++.++++..++ + .+   .+       
T Consensus       458 tA~D~A~ta~R--~Ga~Vtlv~rr~~~--~mp-a~~~e~~~-a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~  531 (944)
T PRK12779        458 TAMDAARTAKR--LGGNVTIVYRRTKS--EMP-ARVEELHH-ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGE  531 (944)
T ss_pred             HHHHHHHHHHH--cCCEEEEEEecCcc--ccc-ccHHHHHH-HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEecc
Confidence            99999999884  57789999987541  111 22233333 346799999998888876542 2 11   11       


Q ss_pred             --C--------CC--cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCC-eeecCCCCeEEecccCCCCccch
Q 017664          218 --S--------SG--ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDEN-LRVRGFKNVFAIGDITDIPEIKQ  284 (368)
Q Consensus       218 --~--------~g--~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~-~~~~~~~~ifa~GD~~~~~~~~~  284 (368)
                        .        +|  .++++|.||+|+|+.|+..+ .....+++.+++|.+.||+. ++| +.|+|||+|||+..+.  +
T Consensus       532 ~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l-~~~~~gle~~~~G~I~vd~~~~~T-s~pgVFAaGD~~~G~~--~  607 (944)
T PRK12779        532 PDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIM-KDAEPGLKTNKWGTIEVEKGSQRT-SIKGVYSGGDAARGGS--T  607 (944)
T ss_pred             ccCcCceeeecCCceEEEECCEEEEcCCcCCChhh-hhcccCceECCCCCEEECCCCCcc-CCCCEEEEEcCCCChH--H
Confidence              1        22  36999999999999998653 33333446778899999974 777 8999999999997644  7


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCC
Q 017664          285 GYLAQKHALVTAKNLKKLMMGRN  307 (368)
Q Consensus       285 ~~~a~~~g~~aa~~i~~~l~g~~  307 (368)
                      +..|+.+|+.||.+|.++|...+
T Consensus       608 vv~Ai~eGr~AA~~I~~~L~~~~  630 (944)
T PRK12779        608 AIRAAGDGQAAAKEIVGEIPFTP  630 (944)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccc
Confidence            89999999999999999886543

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=99.97  E-value=4.3e-31  Score=260.41  Aligned_cols=277  Identities=17%  Similarity=0.180  Sum_probs=185.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccc-eeeeecccccccceeeccccc--CceeEEEeEEEE
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWAS-LRAVVEPSFAVRSVINHGDYL--SNVKIVVSTAVS   89 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~   89 (368)
                      .+.++|+|||||||||++|..|+ +|++|+|+|+++.+|+.+.. +...   ...........+.+  .++++.......
T Consensus       191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~---~~~~~~~~~~~~~l~~~Gv~i~~~~~v~  267 (652)
T PRK12814        191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRF---RLPESVIDADIAPLRAMGAEFRFNTVFG  267 (652)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCC---CCCHHHHHHHHHHHHHcCCEEEeCCccc
Confidence            35679999999999999999998 59999999999887643211 1100   01111110001111  145554443322


Q ss_pred             eeccEEEecCCeEEEecEEEEecCCCC----CCCCchHHHHHHHHHHHH------HHhcCCeEEEEcCchhHHHHHHHHh
Q 017664           90 ITDTEVVTAGGQTFVYDYVVVATGHVE----SVPKSRTERLSQYEKDFE------KVKSANSVLIVGGGPTGVELAGEIA  159 (368)
Q Consensus        90 ~~~~~v~~~~g~~~~~d~lvlAtG~~~----~~p~~~~~~~~~~~~~~~------~~~~~~~v~VvG~g~~~~e~a~~l~  159 (368)
                      .+   +...+. ...||+|++|||+.+    .+|+.+...+.+......      ....+++++|||+|++|+|+|..+.
T Consensus       268 ~d---v~~~~~-~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~  343 (652)
T PRK12814        268 RD---ITLEEL-QKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTAL  343 (652)
T ss_pred             Cc---cCHHHH-HhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHH
Confidence            21   111111 235999999999973    344433332222222221      2345899999999999999999887


Q ss_pred             hhCCCCeEEEEecCcc-cccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCe--EE---cC---------------
Q 017664          160 VDFPDKKVILVHRGPK-LLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGL--IE---TS---------------  218 (368)
Q Consensus       160 ~~~~~~~v~~i~~~~~-~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~--v~---~~---------------  218 (368)
                      + ....+|+++++..+ .++..+    ..+.+. .+.||++++++.+.++..+++.  +.   +.               
T Consensus       344 ~-~Ga~~Vtlv~r~~~~~mpa~~----~ei~~a-~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~  417 (652)
T PRK12814        344 R-LGAESVTILYRRTREEMPANR----AEIEEA-LAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPV  417 (652)
T ss_pred             H-cCCCeEEEeeecCcccCCCCH----HHHHHH-HHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceec
Confidence            4 33457999998764 333222    233333 3569999999988877654431  11   11               


Q ss_pred             CC--cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCC-eeecCCCCeEEecccCCCCccchHHHHHHHHHHH
Q 017664          219 SG--ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDEN-LRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVT  295 (368)
Q Consensus       219 ~g--~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~-~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~a  295 (368)
                      +|  .++++|.||+++|+.|+.+++...++  .++.+|++.||++ ++| +.|+|||+||++..+  .++..|+.||+.|
T Consensus       418 ~g~~~~i~~D~VI~AiG~~p~~~ll~~~gl--~~~~~G~I~vd~~~~~T-s~pgVfA~GDv~~g~--~~v~~Ai~~G~~A  492 (652)
T PRK12814        418 EGSEFTLQADTVISAIGQQVDPPIAEAAGI--GTSRNGTVKVDPETLQT-SVAGVFAGGDCVTGA--DIAINAVEQGKRA  492 (652)
T ss_pred             CCceEEEECCEEEECCCCcCCcccccccCc--cccCCCcEeeCCCCCcC-CCCCEEEcCCcCCCc--hHHHHHHHHHHHH
Confidence            22  26999999999999999988876655  5677899999984 666 899999999999754  3788999999999


Q ss_pred             HHHHHHHHcCCCC
Q 017664          296 AKNLKKLMMGRNK  308 (368)
Q Consensus       296 a~~i~~~l~g~~~  308 (368)
                      |.+|.++|.|++.
T Consensus       493 A~~I~~~L~g~~~  505 (652)
T PRK12814        493 AHAIDLFLNGKPV  505 (652)
T ss_pred             HHHHHHHHcCCCC
Confidence            9999999988753

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=99.97  E-value=1.5e-30  Score=260.73  Aligned_cols=269  Identities=20%  Similarity=0.225  Sum_probs=179.1

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecc-cccccceeeccccc--CceeEEEeEEEEe
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEP-SFAVRSVINHGDYL--SNVKIVVSTAVSI   90 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~   90 (368)
                      +.++|+|||||||||+||++|+ +|++|+|+|+++..|+....   .+.. ..+.+.+....+++  .++++..+...  
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~---~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~--  610 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN---IIPEFRISAESIQKDIELVKFHGVEFKYGCSP--  610 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee---cccccCCCHHHHHHHHHHHHhcCcEEEEeccc--
Confidence            4689999999999999999998 59999999999877644311   1110 01111111111111  15555544211  


Q ss_pred             eccEEEecCCeEEEecEEEEecCCCC-CCCCchH--HH----HHHHHHHH---HHHhcCCeEEEEcCchhHHHHHHHHhh
Q 017664           91 TDTEVVTAGGQTFVYDYVVVATGHVE-SVPKSRT--ER----LSQYEKDF---EKVKSANSVLIVGGGPTGVELAGEIAV  160 (368)
Q Consensus        91 ~~~~v~~~~g~~~~~d~lvlAtG~~~-~~p~~~~--~~----~~~~~~~~---~~~~~~~~v~VvG~g~~~~e~a~~l~~  160 (368)
                         .+...+.+...||+|+||||+.+ ..+++++  ..    +..+....   .....+++|+|||+|++|+|+|..+.+
T Consensus       611 ---d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~~~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~R  687 (1012)
T TIGR03315       611 ---DLTVAELKNQGYKYVILAIGAWKHGPLRLEGGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALR  687 (1012)
T ss_pred             ---ceEhhhhhcccccEEEECCCCCCCCCCCcCCCCcceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHH
Confidence               11222334567999999999983 2222221  11    11111111   112458999999999999999998774


Q ss_pred             hCCC-CeEEEEecCcc-cccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC-eE---------------EcCCC--
Q 017664          161 DFPD-KKVILVHRGPK-LLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG-LI---------------ETSSG--  220 (368)
Q Consensus       161 ~~~~-~~v~~i~~~~~-~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~v---------------~~~~g--  220 (368)
                       .++ .+|++++++.. .++..    ...+.+.+ +.||++++...+.+++ ++. .+               ...+|  
T Consensus       688 -l~Ga~kVtLVyRr~~~~Mpa~----~eEl~~al-eeGVe~~~~~~p~~I~-~g~l~v~~~~l~~~d~sGr~~~v~~Gee  760 (1012)
T TIGR03315       688 -VPGVEKVTVVYRRTKRYMPAS----REELEEAL-EDGVDFKELLSPESFE-DGTLTCEVMKLGEPDASGRRRPVGTGET  760 (1012)
T ss_pred             -hCCCceEEEEEccCccccccC----HHHHHHHH-HcCCEEEeCCceEEEE-CCeEEEEEEEeecccCCCceeeecCCCe
Confidence             334 58999998763 33322    23333333 5699999988877665 211 11               11123  


Q ss_pred             cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCC-eeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHH
Q 017664          221 ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDEN-LRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNL  299 (368)
Q Consensus       221 ~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~-~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i  299 (368)
                      .++++|.||+|+|+.|+.+++...++  .++++|++.||++ ++| +.|+|||+|||+..|.  ++..|+.||+.||.+|
T Consensus       761 ~~I~aD~VIvAiG~~Pnt~lle~~GL--~ld~~G~I~VD~~~~~T-s~pgVFAaGD~a~GP~--tVv~AIaqGr~AA~nI  835 (1012)
T TIGR03315       761 VDLPADTVIAAVGEQVDTDLLQKNGI--PLDEYGWPVVNQATGET-NITNVFVIGDANRGPA--TIVEAIADGRKAANAI  835 (1012)
T ss_pred             EEEEeCEEEEecCCcCChHHHHhcCc--ccCCCCCEEeCCCCCcc-CCCCEEEEeCcCCCcc--HHHHHHHHHHHHHHHH
Confidence            37999999999999999998876555  6678899999986 777 8999999999986544  7889999999999999


Q ss_pred             HHHH
Q 017664          300 KKLM  303 (368)
Q Consensus       300 ~~~l  303 (368)
                      ++..
T Consensus       836 l~~~  839 (1012)
T TIGR03315       836 LSRE  839 (1012)
T ss_pred             hccc
Confidence            8654

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=5.5e-32  Score=231.95  Aligned_cols=341  Identities=19%  Similarity=0.211  Sum_probs=235.3

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEc---CCCceeeeccc--------------------------------
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLID---EKEYFEITWAS--------------------------------   56 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie---~~~~~~~~~~~--------------------------------   56 (368)
                      ....+|++|||||.+||+||++.+ .|.+|.++|   +.+ .|-.|+.                                
T Consensus        16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP-~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyG   94 (503)
T KOG4716|consen   16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTP-QGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYG   94 (503)
T ss_pred             ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCC-CCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhC
Confidence            345799999999999999999987 499999987   333 2211210                                


Q ss_pred             --------------eeeeecccccccceeecccc-cCceeEEEeEEEEeeccEEEec--CC--eEEEecEEEEecCCCCC
Q 017664           57 --------------LRAVVEPSFAVRSVINHGDY-LSNVKIVVSTAVSITDTEVVTA--GG--QTFVYDYVVVATGHVES  117 (368)
Q Consensus        57 --------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~--~g--~~~~~d~lvlAtG~~~~  117 (368)
                                    +...+...+.......+-++ .+.++.++....+++++++...  ++  +.++++..+||||.+|.
T Consensus        95 W~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RPr  174 (503)
T KOG4716|consen   95 WNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPR  174 (503)
T ss_pred             CCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCCC
Confidence                          00000000000000000000 1245667778888888866433  33  46889999999999998


Q ss_pred             CCCchHH--HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcC
Q 017664          118 VPKSRTE--RLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSK  195 (368)
Q Consensus       118 ~p~~~~~--~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~  195 (368)
                      .|++++.  .-.+.++.....+.+.+.+|||+|+.++|+|..|.  ..+.+|++..|+ -++..+|.++.+.+.++++++
T Consensus       175 Yp~IpG~~Ey~ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~--gfg~~vtVmVRS-I~LrGFDqdmae~v~~~m~~~  251 (503)
T KOG4716|consen  175 YPDIPGAKEYGITSDDLFSLPYEPGKTLVVGAGYVALECAGFLK--GFGYDVTVMVRS-ILLRGFDQDMAELVAEHMEER  251 (503)
T ss_pred             CCCCCCceeeeecccccccccCCCCceEEEccceeeeehhhhHh--hcCCCcEEEEEE-eecccccHHHHHHHHHHHHHh
Confidence            8887642  22344445555566889999999999999999998  578899988876 467889999999999999999


Q ss_pred             CcEEEecceeeecccCCC---eEE---cCCCc--EEecCEEEEccCCCCCchhhhccccccccCC-CCcEEeCCCeeecC
Q 017664          196 KVEVILNQSVTLNTISDG---LIE---TSSGE--TIDTDCHFMCTGKAMASSWLRETILKDSLDG-RGRLMVDENLRVRG  266 (368)
Q Consensus       196 gv~i~~~~~v~~i~~~~~---~v~---~~~g~--~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~-~g~i~vd~~~~~~~  266 (368)
                      ||++...+.+.+++.-+.   .|.   +..++  +-++|.|+||.|+.+..+-+.....++..|+ .|.|.+|+.-++ +
T Consensus       252 Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t-~  330 (503)
T KOG4716|consen  252 GIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEAT-N  330 (503)
T ss_pred             CCceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccCCccccChHHhc-C
Confidence            999999988888876543   222   12222  4669999999999999888888888887765 489999999888 8


Q ss_pred             CCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCCC------CCCccccccCCCeEEEeecCCcceeEecC----
Q 017664          267 FKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRN------KGTMATYKPGYPIALVSLGRREGVAHFPF----  336 (368)
Q Consensus       267 ~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----  336 (368)
                      .|+|||+||+... .|.+...|++.|+.+|+.+..   |..      .-+..-|+|- +..-+||.+++|+..+.-    
T Consensus       331 vp~vyAvGDIl~~-kpELTPvAIqsGrlLa~Rlf~---gs~q~~dy~~V~TTVFTPL-Ey~c~GlsEE~Ai~k~g~dnie  405 (503)
T KOG4716|consen  331 VPYVYAVGDILED-KPELTPVAIQSGRLLARRLFA---GSTQLMDYDDVATTVFTPL-EYGCVGLSEEDAIEKYGEDNIE  405 (503)
T ss_pred             CCceEEecceecC-CcccchhhhhhchHHHHHHhc---CcceeeeccCCceeeecch-hccccCCCHHHHHHHhCcccEE
Confidence            9999999999876 345788999999999999974   211      0111344543 334568887777654321    


Q ss_pred             ----------ccccCccce--eeeccccchh-HHHHHcCCCC
Q 017664          337 ----------LTISGRIPG--WIKSRDLFVG-KTRKQLGLKP  365 (368)
Q Consensus       337 ----------~~~~~~~~~--~~k~~~~~~~-~~~~~lG~~~  365 (368)
                                +.++.+...  ++|.  ++.+ .+.+++|.|.
T Consensus       406 vfH~~f~P~E~~ipqrd~~~CY~K~--vc~r~~~qkv~G~H~  445 (503)
T KOG4716|consen  406 VFHSYFKPLEYTIPQRDVRHCYLKA--VCERDEDQKVLGLHI  445 (503)
T ss_pred             EeeccccceEEEcccccCCceEEEE--eecccCCceEEEEEE
Confidence                      123444333  4554  6654 3456777664

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.97  E-value=4e-30  Score=262.38  Aligned_cols=279  Identities=16%  Similarity=0.163  Sum_probs=183.9

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeec-cceeeee-cccccccceeecccccCceeEEEeEEEEee
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITW-ASLRAVV-EPSFAVRSVINHGDYLSNVKIVVSTAVSIT   91 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (368)
                      +.++|+|||||||||+||.+|+ +|++|+|+|+.+..|+.. ..+.... ...+.........+  .++++....++..+
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~--~Gv~~~~~~~vg~~  506 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVD--IGVKIETNKVIGKT  506 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHH--CCCEEEeCCccCCc
Confidence            4679999999999999999997 599999999998776321 1111110 11111111111111  15666555433211


Q ss_pred             ccEEEecCCe-EEEecEEEEecCCC-CC---CCCchHHHHHHHHHHHHH---------------HhcCCeEEEEcCchhH
Q 017664           92 DTEVVTAGGQ-TFVYDYVVVATGHV-ES---VPKSRTERLSQYEKDFEK---------------VKSANSVLIVGGGPTG  151 (368)
Q Consensus        92 ~~~v~~~~g~-~~~~d~lvlAtG~~-~~---~p~~~~~~~~~~~~~~~~---------------~~~~~~v~VvG~g~~~  151 (368)
                         +...+.. ...||+||||||+. |.   +|+.+..++.+...++..               ...+++|+|||+|++|
T Consensus       507 ---~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA  583 (1006)
T PRK12775        507 ---FTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTA  583 (1006)
T ss_pred             ---cCHHHHhhccCCCEEEEecCCCCCCCCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHH
Confidence               1111111 24699999999995 54   444332333222222211               2357999999999999


Q ss_pred             HHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccC-CC---eEEc---------C
Q 017664          152 VELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTIS-DG---LIET---------S  218 (368)
Q Consensus       152 ~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~-~~---~v~~---------~  218 (368)
                      +|+|..+.+ .....|+++.+....  .++ .. ....+.+++.||++++++.+.++..+ ++   .+++         .
T Consensus       584 ~D~A~~a~r-lGa~~Vtiv~rr~~~--em~-a~-~~e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~  658 (1006)
T PRK12775        584 MDCLRVAKR-LGAPTVRCVYRRSEA--EAP-AR-IEEIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDE  658 (1006)
T ss_pred             HHHHHHHHH-cCCCEEEEEeecCcc--cCC-CC-HHHHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCC
Confidence            999887764 333468888876432  111 11 22235677889999999998888643 33   2221         1


Q ss_pred             --------CC--cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCC-----CeeecCCCCeEEecccCCCCccc
Q 017664          219 --------SG--ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDE-----NLRVRGFKNVFAIGDITDIPEIK  283 (368)
Q Consensus       219 --------~g--~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~-----~~~~~~~~~ifa~GD~~~~~~~~  283 (368)
                              +|  .++++|.||+|+|+.|+..++... .++.++++|.+.+|+     +++| +.|+|||+|||+..+.  
T Consensus       659 ~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~-~gl~l~~~G~I~vd~~~v~~~~~T-s~pgVFAaGDv~~G~~--  734 (1006)
T PRK12775        659 KGRRKPMPTGEFKDLECDTVIYALGTKANPIITQST-PGLALNKWGNIAADDGKLESTQST-NLPGVFAGGDIVTGGA--  734 (1006)
T ss_pred             CCCccccCCCceEEEEcCEEEECCCcCCChhhhhcc-CCcccCCCCcEEeCCCccccCcCC-CCCCEEEecCcCCCcc--
Confidence                    12  269999999999999998765532 123567789999997     6777 8999999999997643  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHcCCC
Q 017664          284 QGYLAQKHALVTAKNLKKLMMGRN  307 (368)
Q Consensus       284 ~~~~a~~~g~~aa~~i~~~l~g~~  307 (368)
                      +...|+.+|+.||.+|.++|.++.
T Consensus       735 ~vv~Ai~~Gr~AA~~I~~~L~~~~  758 (1006)
T PRK12775        735 TVILAMGAGRRAARSIATYLRLGK  758 (1006)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCC
Confidence            788999999999999999998764

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.97  E-value=9.3e-30  Score=251.99  Aligned_cols=274  Identities=16%  Similarity=0.179  Sum_probs=180.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeec-ccccccceeecccccC--ceeEEEeEEEE
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVE-PSFAVRSVINHGDYLS--NVKIVVSTAVS   89 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~   89 (368)
                      .+.++|+|||||||||++|..|+ .|++|+|+|+.+.+|+.+.   ..+. ..+....+....+++.  ++++.....+.
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~---~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~  401 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT---FGIPAFKLDKSLLARRREIFSAMGIEFELNCEVG  401 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee---ecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeC
Confidence            35689999999999999999998 4999999999987764321   1110 0111111111111111  44544332221


Q ss_pred             eeccEEEecCCeEEEecEEEEecCCCC----CCCCchHHHHHHHH----HHHH-----------H--HhcCCeEEEEcCc
Q 017664           90 ITDTEVVTAGGQTFVYDYVVVATGHVE----SVPKSRTERLSQYE----KDFE-----------K--VKSANSVLIVGGG  148 (368)
Q Consensus        90 ~~~~~v~~~~g~~~~~d~lvlAtG~~~----~~p~~~~~~~~~~~----~~~~-----------~--~~~~~~v~VvG~g  148 (368)
                      .+   +...+ ....||.|++|||+..    .+|+....++....    ....           .  ...+++++|||+|
T Consensus       402 ~~---i~~~~-~~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG  477 (654)
T PRK12769        402 KD---ISLES-LLEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGG  477 (654)
T ss_pred             Cc---CCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCc
Confidence            11   11111 1246999999999862    34443322221110    0000           0  1246899999999


Q ss_pred             hhHHHHHHHHhhhCCCCeEEEEecCccc-ccccCchhHHHHHHHHHcCCcEEEecceeeecccC-CC---eEEc------
Q 017664          149 PTGVELAGEIAVDFPDKKVILVHRGPKL-LEFVGSRASQIALDWLTSKKVEVILNQSVTLNTIS-DG---LIET------  217 (368)
Q Consensus       149 ~~~~e~a~~l~~~~~~~~v~~i~~~~~~-l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~-~~---~v~~------  217 (368)
                      ++|+|+|..+.+ ....+|+++++++.. ++.     .....+.+++.||++++++.+.++..+ ++   .+++      
T Consensus       478 ~~a~d~A~~a~r-~ga~~Vt~i~~~~~~~~~~-----~~~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~  551 (654)
T PRK12769        478 DTAMDCVRTALR-HGASNVTCAYRRDEANMPG-----SKKEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLG  551 (654)
T ss_pred             HHHHHHHHHHHH-cCCCeEEEeEecCCCCCCC-----CHHHHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEec
Confidence            999999987764 334579999887553 222     223446688899999999988887643 23   2222      


Q ss_pred             ---CCC-----------cEEecCEEEEccCCCCCc-hhhhccccccccCCCCcEEeCC----CeeecCCCCeEEecccCC
Q 017664          218 ---SSG-----------ETIDTDCHFMCTGKAMAS-SWLRETILKDSLDGRGRLMVDE----NLRVRGFKNVFAIGDITD  278 (368)
Q Consensus       218 ---~~g-----------~~i~~d~vi~a~G~~p~~-~~~~~~~l~~~~~~~g~i~vd~----~~~~~~~~~ifa~GD~~~  278 (368)
                         .+|           .++++|.||+|+|+.|+. .++...++  .++++|.+.+|+    ++|| +.|+|||+||++.
T Consensus       552 ~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl--~~~~~G~i~vd~~~~~~~~T-s~~gVfAaGD~~~  628 (654)
T PRK12769        552 EPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGV--TVDKWGRIIADVESQYRYQT-SNPKIFAGGDAVR  628 (654)
T ss_pred             CcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCC--cCCCCCCEEeCCCcccCccc-CCCCEEEcCCcCC
Confidence               122           269999999999999984 45555444  678889999986    4788 8999999999997


Q ss_pred             CCccchHHHHHHHHHHHHHHHHHHHcC
Q 017664          279 IPEIKQGYLAQKHALVTAKNLKKLMMG  305 (368)
Q Consensus       279 ~~~~~~~~~a~~~g~~aa~~i~~~l~g  305 (368)
                      .+.  +...|+.+|+.||++|.++|.+
T Consensus       629 g~~--~vv~Ai~~Gr~AA~~I~~~L~~  653 (654)
T PRK12769        629 GAD--LVVTAMAEGRHAAQGIIDWLGV  653 (654)
T ss_pred             CCc--HHHHHHHHHHHHHHHHHHHhCc
Confidence            654  7889999999999999998865

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=99.97  E-value=3.3e-29  Score=238.45  Aligned_cols=271  Identities=16%  Similarity=0.172  Sum_probs=179.2

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecc-cccccceeeccccc--CceeEEEeEEEEe
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEP-SFAVRSVINHGDYL--SNVKIVVSTAVSI   90 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~   90 (368)
                      +.++|+||||||+||++|..|+ +|++|+++|+.+.+++...   ..+.. ......+....+++  .++++.....+..
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~---~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~  216 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT---FGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGR  216 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee---ecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCC
Confidence            5689999999999999999998 5999999999987763221   11100 01111111111111  1455443322111


Q ss_pred             eccEEEecCCeEEEecEEEEecCCCC----CCCCchHHHHHHHHHHHH-----------------HHhcCCeEEEEcCch
Q 017664           91 TDTEVVTAGGQTFVYDYVVVATGHVE----SVPKSRTERLSQYEKDFE-----------------KVKSANSVLIVGGGP  149 (368)
Q Consensus        91 ~~~~v~~~~g~~~~~d~lvlAtG~~~----~~p~~~~~~~~~~~~~~~-----------------~~~~~~~v~VvG~g~  149 (368)
                         .+... .....||.||+|||+.+    .+|+.+..++.+...+..                 ....+++++|+|+|+
T Consensus       217 ---~~~~~-~~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~  292 (467)
T TIGR01318       217 ---DISLD-DLLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGD  292 (467)
T ss_pred             ---ccCHH-HHHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcH
Confidence               11111 12247999999999984    345544333222111100                 012468999999999


Q ss_pred             hHHHHHHHHhhhCCC-CeEEEEecCccc-ccccCchhHHHHHHHHHcCCcEEEecceeeecccCC-C---eEEc------
Q 017664          150 TGVELAGEIAVDFPD-KKVILVHRGPKL-LEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISD-G---LIET------  217 (368)
Q Consensus       150 ~~~e~a~~l~~~~~~-~~v~~i~~~~~~-l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~---~v~~------  217 (368)
                      +|+++|..+.+  .+ .+|+++++++.. ++..     ....+.+++.||++++++.+.++..++ +   .+++      
T Consensus       293 ~a~d~A~~a~~--~Ga~~Vtvv~r~~~~~~~~~-----~~e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~  365 (467)
T TIGR01318       293 TAMDCVRTAIR--LGAASVTCAYRRDEANMPGS-----RREVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALG  365 (467)
T ss_pred             HHHHHHHHHHH--cCCCeEEEEEecCcccCCCC-----HHHHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEec
Confidence            99999988774  35 579999987653 2222     223355678899999999998886532 3   1222      


Q ss_pred             ---CC-----------CcEEecCEEEEccCCCCCc-hhhhccccccccCCCCcEEeC----CCeeecCCCCeEEecccCC
Q 017664          218 ---SS-----------GETIDTDCHFMCTGKAMAS-SWLRETILKDSLDGRGRLMVD----ENLRVRGFKNVFAIGDITD  278 (368)
Q Consensus       218 ---~~-----------g~~i~~d~vi~a~G~~p~~-~~~~~~~l~~~~~~~g~i~vd----~~~~~~~~~~ifa~GD~~~  278 (368)
                         .+           .+++++|.||+++|++|+. .++...++  .++++|++.+|    ++++| +.|+||++|||+.
T Consensus       366 ~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl--~~~~~g~i~vd~~~~~~~~T-~~~gVfa~GD~~~  442 (467)
T TIGR01318       366 EPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGI--TLDSWGRIITGDVSYLPYQT-TNPKIFAGGDAVR  442 (467)
T ss_pred             ccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCc--cCCCCCCEEeCCccccCccC-CCCCEEEECCcCC
Confidence               11           2379999999999999984 45554444  66778999999    57887 7999999999997


Q ss_pred             CCccchHHHHHHHHHHHHHHHHHHHc
Q 017664          279 IPEIKQGYLAQKHALVTAKNLKKLMM  304 (368)
Q Consensus       279 ~~~~~~~~~a~~~g~~aa~~i~~~l~  304 (368)
                      .+.  +...|+.+|+.||.+|.++|.
T Consensus       443 ~~~--~~~~Ai~~G~~aA~~i~~~L~  466 (467)
T TIGR01318       443 GAD--LVVTAVAEGRQAAQGILDWLG  466 (467)
T ss_pred             Ccc--HHHHHHHHHHHHHHHHHHHhc
Confidence            543  678999999999999998763

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=99.97  E-value=6.5e-29  Score=237.31  Aligned_cols=280  Identities=18%  Similarity=0.204  Sum_probs=177.9

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeecc-ceeeeecccccccceeeccccc--CceeEEEeEEEEe
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWA-SLRAVVEPSFAVRSVINHGDYL--SNVKIVVSTAVSI   90 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   90 (368)
                      ..++|+||||||+|+++|..|+ +|++|+|+|+.+..++... .+...   ...........+++  .++++.....+..
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~---~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~  218 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNM---KLDKAIVDRRIDLLSAEGIDFVTNTEIGV  218 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCc---cCCHHHHHHHHHHHHhCCCEEECCCEeCC
Confidence            4579999999999999999998 5999999999987652211 11100   00111111111111  1566554443321


Q ss_pred             eccEEEecCCeEEEecEEEEecCCC-CC---CCCchHHHHHHHHHHHH----------------HHhcCCeEEEEcCchh
Q 017664           91 TDTEVVTAGGQTFVYDYVVVATGHV-ES---VPKSRTERLSQYEKDFE----------------KVKSANSVLIVGGGPT  150 (368)
Q Consensus        91 ~~~~v~~~~g~~~~~d~lvlAtG~~-~~---~p~~~~~~~~~~~~~~~----------------~~~~~~~v~VvG~g~~  150 (368)
                      +   +. .+.....||.|++|||+. |.   +|+.+...+.....+..                ....+++++|||+|++
T Consensus       219 ~---~~-~~~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~  294 (485)
T TIGR01317       219 D---IS-ADELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDT  294 (485)
T ss_pred             c---cC-HHHHHhhCCEEEEccCCCCCCcCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHH
Confidence            1   11 112235799999999998 54   44433222222111110                0135789999999999


Q ss_pred             HHHHHHHHhhhCCCCeEEEEecCcccccccC-----ch------hHHHHHHHHHcCCcEE-EecceeeecccCC-C---e
Q 017664          151 GVELAGEIAVDFPDKKVILVHRGPKLLEFVG-----SR------ASQIALDWLTSKKVEV-ILNQSVTLNTISD-G---L  214 (368)
Q Consensus       151 ~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~-----~~------~~~~~~~~l~~~gv~i-~~~~~v~~i~~~~-~---~  214 (368)
                      |+|+|..+.+ ....+|+++++.+..+....     +.      ......+.++..|+.+ ++++.+.++..++ +   .
T Consensus       295 g~d~a~~a~~-~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~  373 (485)
T TIGR01317       295 GADCVGTSLR-HGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTA  373 (485)
T ss_pred             HHHHHHHHHH-cCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEE
Confidence            9999877664 35578999987765443111     11      1122333344456654 4566666665432 2   2


Q ss_pred             EEc--------CCC-----------cEEecCEEEEccCCC-CCchhhhccccccccCCCCcEEe-CCCeeecCCCCeEEe
Q 017664          215 IET--------SSG-----------ETIDTDCHFMCTGKA-MASSWLRETILKDSLDGRGRLMV-DENLRVRGFKNVFAI  273 (368)
Q Consensus       215 v~~--------~~g-----------~~i~~d~vi~a~G~~-p~~~~~~~~~l~~~~~~~g~i~v-d~~~~~~~~~~ifa~  273 (368)
                      +.+        ++|           .++++|.||+++|+. |+.+++...++  .++++|++.+ |++++| +.|+|||+
T Consensus       374 v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl--~~~~~G~i~~~~~~~~T-s~~gVfAa  450 (485)
T TIGR01317       374 LRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGV--KKTRRGNISAGYDDYST-SIPGVFAA  450 (485)
T ss_pred             EEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCc--ccCCCCCEEecCCCceE-CCCCEEEe
Confidence            221        123           279999999999986 88888776655  5677888855 567888 89999999


Q ss_pred             cccCCCCccchHHHHHHHHHHHHHHHHHHHcCCC
Q 017664          274 GDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRN  307 (368)
Q Consensus       274 GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~  307 (368)
                      |||+..+.  ++..|+.+|+.||.+|.++|.|..
T Consensus       451 GD~~~g~~--~~~~Av~~G~~AA~~i~~~L~g~~  482 (485)
T TIGR01317       451 GDCRRGQS--LIVWAINEGRKAAAAVDRYLMGSS  482 (485)
T ss_pred             eccCCCcH--HHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99997543  778899999999999999998764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK13984 putative oxidoreductase; Provisional

Probab=99.96  E-value=2.7e-28  Score=240.18  Aligned_cols=278  Identities=18%  Similarity=0.179  Sum_probs=176.3

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeecc-ceeeeecccccccceeeccccc--CceeEEEeEEE
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWA-SLRAVVEPSFAVRSVINHGDYL--SNVKIVVSTAV   88 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~   88 (368)
                      ..+.++|+|||+|+||+++|..|+ +|++|+|+|+++..++... .+...   ....+......+++  .+++++....+
T Consensus       280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~---~~~~~~~~~~~~~~~~~gv~~~~~~~v  356 (604)
T PRK13984        280 EKKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSY---RLPDEALDKDIAFIEALGVKIHLNTRV  356 (604)
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcc---cCCHHHHHHHHHHHHHCCcEEECCCEe
Confidence            345788999999999999999998 4999999999987653221 11000   01111111111111  14555443322


Q ss_pred             EeeccEEEecCCeEEEecEEEEecCCC-C---CCCCchHHHHHHHHHHHHHH-----------hcCCeEEEEcCchhHHH
Q 017664           89 SITDTEVVTAGGQTFVYDYVVVATGHV-E---SVPKSRTERLSQYEKDFEKV-----------KSANSVLIVGGGPTGVE  153 (368)
Q Consensus        89 ~~~~~~v~~~~g~~~~~d~lvlAtG~~-~---~~p~~~~~~~~~~~~~~~~~-----------~~~~~v~VvG~g~~~~e  153 (368)
                      ..+   +...+ ....||+||+|||+. |   .+|+.....+..........           ..+++++|||||++|+|
T Consensus       357 ~~~---~~~~~-~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e  432 (604)
T PRK13984        357 GKD---IPLEE-LREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMD  432 (604)
T ss_pred             CCc---CCHHH-HHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHH
Confidence            111   11111 235799999999986 3   45554332222222221111           12689999999999999


Q ss_pred             HHHHHhhhC----CCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEc--------C
Q 017664          154 LAGEIAVDF----PDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIET--------S  218 (368)
Q Consensus       154 ~a~~l~~~~----~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~--------~  218 (368)
                      +|..+.+..    ...+|+++.... ....++.. ...+.+ +.+.||++++++.+.++..+++   .+++        .
T Consensus       433 ~A~~l~r~~~~~~g~~~V~v~~~~r-~~~~~~~~-~~e~~~-~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~  509 (604)
T PRK13984        433 IARSMARLQKMEYGEVNVKVTSLER-TFEEMPAD-MEEIEE-GLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDE  509 (604)
T ss_pred             HHHHHHhccccccCceEEEEecccc-CcccCCCC-HHHHHH-HHHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCC
Confidence            999987421    234678764321 11122222 222333 3457999999988877754443   2221        1


Q ss_pred             -----------CCcEEecCEEEEccCCCCCchhhhcc-ccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHH
Q 017664          219 -----------SGETIDTDCHFMCTGKAMASSWLRET-ILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGY  286 (368)
Q Consensus       219 -----------~g~~i~~d~vi~a~G~~p~~~~~~~~-~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~  286 (368)
                                 +++++++|.||+++|+.|+.+++... ...+.. .+|++.||+++|| +.|+|||+|||+..+.   ..
T Consensus       510 ~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~-~~G~i~vd~~~~T-s~~gVfAaGD~~~~~~---~v  584 (604)
T PRK13984        510 EGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEF-VRGRILTNEYGQT-SIPWLFAGGDIVHGPD---II  584 (604)
T ss_pred             CCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccc-cCCeEEeCCCCcc-CCCCEEEecCcCCchH---HH
Confidence                       22479999999999999998877642 112233 4688999999998 8999999999997653   46


Q ss_pred             HHHHHHHHHHHHHHHHHcC
Q 017664          287 LAQKHALVTAKNLKKLMMG  305 (368)
Q Consensus       287 ~a~~~g~~aa~~i~~~l~g  305 (368)
                      .|+.+|+.||.+|.++|.+
T Consensus       585 ~Ai~~G~~AA~~I~~~L~~  603 (604)
T PRK13984        585 HGVADGYWAAEGIDMYLRK  603 (604)
T ss_pred             HHHHHHHHHHHHHHHHhcc
Confidence            7999999999999998865

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.96  E-value=6e-28  Score=238.10  Aligned_cols=275  Identities=17%  Similarity=0.209  Sum_probs=179.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecc-cccccceeeccccc--CceeEEEeEEEE
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEP-SFAVRSVINHGDYL--SNVKIVVSTAVS   89 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~   89 (368)
                      .+.++|+||||||+||++|..|+ .|++|+|+|+++.+|+.+.   ..+.+ .+....+....+++  .++++.....+.
T Consensus       308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~---~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~  384 (639)
T PRK12809        308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT---FGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIG  384 (639)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee---ccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccC
Confidence            35789999999999999999998 5999999999998763321   11111 11111111111111  145554333221


Q ss_pred             eeccEEEecCCeEEEecEEEEecCCCC----CCCCchHHHHHHHHHHH-----------H------HHhcCCeEEEEcCc
Q 017664           90 ITDTEVVTAGGQTFVYDYVVVATGHVE----SVPKSRTERLSQYEKDF-----------E------KVKSANSVLIVGGG  148 (368)
Q Consensus        90 ~~~~~v~~~~g~~~~~d~lvlAtG~~~----~~p~~~~~~~~~~~~~~-----------~------~~~~~~~v~VvG~g  148 (368)
                      .   .+...+ ....||.|++|||+.+    .+|+.+..++.....+.           .      ....+++++|+|+|
T Consensus       385 ~---~~~~~~-l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG  460 (639)
T PRK12809        385 R---DITFSD-LTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGG  460 (639)
T ss_pred             C---cCCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCc
Confidence            1   111111 2346999999999972    34443322221110000           0      11246899999999


Q ss_pred             hhHHHHHHHHhhhCCCCeEEEEecCccc-ccccCchhHHHHHHHHHcCCcEEEecceeeecccCC-C---eEEc---C--
Q 017664          149 PTGVELAGEIAVDFPDKKVILVHRGPKL-LEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISD-G---LIET---S--  218 (368)
Q Consensus       149 ~~~~e~a~~l~~~~~~~~v~~i~~~~~~-l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~---~v~~---~--  218 (368)
                      .+++++|..+.+ ....+|+++++++.. ++..    ...+ ..+++.||++++++.++++..++ +   .+++   .  
T Consensus       461 ~~a~d~a~~~~~-~Ga~~Vt~v~rr~~~~~~~~----~~e~-~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~  534 (639)
T PRK12809        461 DTTMDCLRTSIR-LNAASVTCAYRRDEVSMPGS----RKEV-VNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMG  534 (639)
T ss_pred             HHHHHHHHHHHH-cCCCeEEEeeecCcccCCCC----HHHH-HHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEec
Confidence            999999987664 234589999987654 2222    1222 34677899999999998886432 3   2211   1  


Q ss_pred             ----CC-----------cEEecCEEEEccCCCCCc-hhhhccccccccCCCCcEEeCC----CeeecCCCCeEEecccCC
Q 017664          219 ----SG-----------ETIDTDCHFMCTGKAMAS-SWLRETILKDSLDGRGRLMVDE----NLRVRGFKNVFAIGDITD  278 (368)
Q Consensus       219 ----~g-----------~~i~~d~vi~a~G~~p~~-~~~~~~~l~~~~~~~g~i~vd~----~~~~~~~~~ifa~GD~~~  278 (368)
                          +|           .++++|.||+|+|+.|+. .++...++  .++++|++.+|+    ++|| +.|+|||+||++.
T Consensus       535 ~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl--~~~~~G~i~vd~~~~~~~~T-s~~gVfA~GD~~~  611 (639)
T PRK12809        535 EPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGI--KLDKWGLIQTGDVGYLPTQT-HLKKVFAGGDAVH  611 (639)
T ss_pred             CcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCc--ccCCCCCEEeCCCcccCccc-CCCCEEEcCCCCC
Confidence                12           379999999999999864 45554444  677889999986    3788 8999999999997


Q ss_pred             CCccchHHHHHHHHHHHHHHHHHHHcCC
Q 017664          279 IPEIKQGYLAQKHALVTAKNLKKLMMGR  306 (368)
Q Consensus       279 ~~~~~~~~~a~~~g~~aa~~i~~~l~g~  306 (368)
                      .+.  +...|+.+|+.||++|.++|.+.
T Consensus       612 g~~--~vv~Ai~~Gr~AA~~i~~~l~~~  637 (639)
T PRK12809        612 GAD--LVVTAMAAGRQAARDMLTLFDTK  637 (639)
T ss_pred             Cch--HHHHHHHHHHHHHHHHHHHHhhh
Confidence            644  77899999999999999988654

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=99.95  E-value=4.2e-27  Score=229.68  Aligned_cols=277  Identities=21%  Similarity=0.225  Sum_probs=179.4

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecc-cccccceeeccccc--CceeEEEeEEE
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEP-SFAVRSVINHGDYL--SNVKIVVSTAV   88 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~   88 (368)
                      .....+|+|||+||+||++|..|+ .|++|+++|+.+.+++.+.   ..+.. .+..+......+..  .++++......
T Consensus       134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~---~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~  210 (564)
T PRK12771        134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR---YGIPAYRLPREVLDAEIQRILDLGVEVRLGVRV  210 (564)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee---ecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence            455789999999999999999997 5999999999988764321   11110 01111111100111  13444333221


Q ss_pred             EeeccEEEecCCeEEEecEEEEecCCCC----CCCCchHHHHHHHHHHHH------HHhcCCeEEEEcCchhHHHHHHHH
Q 017664           89 SITDTEVVTAGGQTFVYDYVVVATGHVE----SVPKSRTERLSQYEKDFE------KVKSANSVLIVGGGPTGVELAGEI  158 (368)
Q Consensus        89 ~~~~~~v~~~~g~~~~~d~lvlAtG~~~----~~p~~~~~~~~~~~~~~~------~~~~~~~v~VvG~g~~~~e~a~~l  158 (368)
                      ..+..   . +.....||++++|+|+.+    .+|+..............      ....+++++|+|+|.++++.+..+
T Consensus       211 ~~~~~---~-~~~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a  286 (564)
T PRK12771        211 GEDIT---L-EQLEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTA  286 (564)
T ss_pred             CCcCC---H-HHHHhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHH
Confidence            11100   0 001235899999999973    233322211111111111      123478999999999999999876


Q ss_pred             hhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC-e-------EEc----CCC------
Q 017664          159 AVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG-L-------IET----SSG------  220 (368)
Q Consensus       159 ~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~-------v~~----~~g------  220 (368)
                      .+ ....+|+++++.+...  ++ .....+ +.+.+.||++++++.+.++..+++ .       +..    ++|      
T Consensus       287 ~~-lga~~v~ii~r~~~~~--~~-~~~~~~-~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~  361 (564)
T PRK12771        287 RR-LGAEEVTIVYRRTRED--MP-AHDEEI-EEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVT  361 (564)
T ss_pred             HH-cCCCEEEEEEecCccc--CC-CCHHHH-HHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecC
Confidence            64 3447899998875421  11 122223 334567999999999988876542 1       111    122      


Q ss_pred             ---cEEecCEEEEccCCCCCchhhhc-cccccccCCCCcEEeCC-CeeecCCCCeEEecccCCCCccchHHHHHHHHHHH
Q 017664          221 ---ETIDTDCHFMCTGKAMASSWLRE-TILKDSLDGRGRLMVDE-NLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVT  295 (368)
Q Consensus       221 ---~~i~~d~vi~a~G~~p~~~~~~~-~~l~~~~~~~g~i~vd~-~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~a  295 (368)
                         .++++|.||+|+|+.|+.+++.. .++  . +++|++.||+ +++| +.|+|||+|||+..+  +++..|+.+|+.|
T Consensus       362 g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl--~-~~~G~i~vd~~~~~t-s~~~Vfa~GD~~~g~--~~v~~Av~~G~~a  435 (564)
T PRK12771        362 GEEETLEADLVVLAIGQDIDSAGLESVPGV--E-VGRGVVQVDPNFMMT-GRPGVFAGGDMVPGP--RTVTTAIGHGKKA  435 (564)
T ss_pred             CceEEEECCEEEECcCCCCchhhhhhccCc--c-cCCCCEEeCCCCccC-CCCCEEeccCcCCCc--hHHHHHHHHHHHH
Confidence               37999999999999998888774 344  4 6789999998 5555 899999999998754  4789999999999


Q ss_pred             HHHHHHHHcCCC
Q 017664          296 AKNLKKLMMGRN  307 (368)
Q Consensus       296 a~~i~~~l~g~~  307 (368)
                      |.+|.+.|.|+.
T Consensus       436 A~~i~~~L~g~~  447 (564)
T PRK12771        436 ARNIDAFLGGEP  447 (564)
T ss_pred             HHHHHHHHcCCC
Confidence            999999998764

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=99.95  E-value=1.6e-25  Score=211.81  Aligned_cols=279  Identities=22%  Similarity=0.293  Sum_probs=206.1

Q ss_pred             EEEECCChHHHHHHHHhhc---CCcEEEEcCCCceeeeccceeeeecccccc-cceeecccc--cCceeEE-EeEEEEee
Q 017664           19 VVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYFEITWASLRAVVEPSFAV-RSVINHGDY--LSNVKIV-VSTAVSIT   91 (368)
Q Consensus        19 vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~-~~~~~~~~   91 (368)
                      ++|||+|++|+++|..|++   +.+++++..++...+....+...+...... ........+  ..++... ...+..++
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id   80 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPRFNRATGIDVRTGTEVTSID   80 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccchhHHhhCCEEeeCCEEEEec
Confidence            5899999999999998763   788998888876655544433332221110 111110001  1134443 34577777


Q ss_pred             c--cEEEecCCeEEEecEEEEecCCCCCCCC-------chHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhC
Q 017664           92 D--TEVVTAGGQTFVYDYVVVATGHVESVPK-------SRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDF  162 (368)
Q Consensus        92 ~--~~v~~~~g~~~~~d~lvlAtG~~~~~p~-------~~~~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~  162 (368)
                      +  +.+.+.++ .+.||+|++|||++|..++       ...................++++|+|+|+.|+++|..+.+  
T Consensus        81 ~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~--  157 (415)
T COG0446          81 PENKVVLLDDG-EIEYDYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAK--  157 (415)
T ss_pred             CCCCEEEECCC-cccccEEEEcCCCcccCCCccccCceEEECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHHH--
Confidence            5  47888888 8999999999999987764       1112233333333333336899999999999999999985  


Q ss_pred             CCCeEEEEecCcccccccC-chhHHHHHHHHHcCCcEEEecceeeecccCCC--e---EEcCCCcEEecCEEEEccCCCC
Q 017664          163 PDKKVILVHRGPKLLEFVG-SRASQIALDWLTSKKVEVILNQSVTLNTISDG--L---IETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       163 ~~~~v~~i~~~~~~l~~~~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~---v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                      .+.+|++++..+++++..- +++...+.+.++++||++++++.+.+++...+  .   +...+++.+++|.+++++|.+|
T Consensus       158 ~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p  237 (415)
T COG0446         158 RGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERP  237 (415)
T ss_pred             cCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccc
Confidence            5899999999999888766 88999999999999999999999999987765  1   5778888999999999999999


Q ss_pred             CchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCcc--------chHHHHHHHHHHHHHHHHH
Q 017664          237 ASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEI--------KQGYLAQKHALVTAKNLKK  301 (368)
Q Consensus       237 ~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~--------~~~~~a~~~g~~aa~~i~~  301 (368)
                      +..+....... ....+|++.||+.+++.+.++||++|||+..+..        .....+..+++.++.++..
T Consensus       238 ~~~l~~~~~~~-~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~  309 (415)
T COG0446         238 NVVLANDALPG-LALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAG  309 (415)
T ss_pred             cHHHHhhCccc-eeccCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhHHHHHHhcc
Confidence            97666655422 3456789999999999338999999999876533        2446788899999988874

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.94  E-value=1.1e-25  Score=231.14  Aligned_cols=272  Identities=15%  Similarity=0.089  Sum_probs=181.0

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccc---cCceeEEE-eEEEE
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDY---LSNVKIVV-STAVS   89 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~   89 (368)
                      ..+||+|||||||||+||.+|+ .|++|+|+|+++.+++.+.............+......+.   +.++++.. ..+..
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~  241 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFG  241 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEE
Confidence            4679999999999999999997 5999999999988775442211111000000000111111   12344443 23333


Q ss_pred             eecc-EE--------E--------e-cCCeEEEecEEEEecCCCCCCCC---chHHHHHHHHHHH---HH--HhcCCeEE
Q 017664           90 ITDT-EV--------V--------T-AGGQTFVYDYVVVATGHVESVPK---SRTERLSQYEKDF---EK--VKSANSVL  143 (368)
Q Consensus        90 ~~~~-~v--------~--------~-~~g~~~~~d~lvlAtG~~~~~p~---~~~~~~~~~~~~~---~~--~~~~~~v~  143 (368)
                      +..+ .+        .        . .....+.||+||||||+.+..|+   .+.+.+.......   ..  ...+++++
T Consensus       242 i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG~~~pgV~~~~~~~~~l~~~~~~~gk~Vv  321 (985)
T TIGR01372       242 YYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFANNDRPGVMLAGAARTYLNRYGVAPGKRIV  321 (985)
T ss_pred             EecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCCCCCCCcEEchHHHHHHHhhCcCCCCeEE
Confidence            3221 10        0        0 01126899999999999965443   3333333222211   11  23579999


Q ss_pred             EEcCchhHHHHHHHHhhhCCC-CeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcC--
Q 017664          144 IVGGGPTGVELAGEIAVDFPD-KKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETS--  218 (368)
Q Consensus       144 VvG~g~~~~e~a~~l~~~~~~-~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~--  218 (368)
                      |+|+|++++|+|..|.+  .+ ..|+++++.+.+        ...+.+.+++.||++++++.+.++..++.  .+++.  
T Consensus       322 ViG~G~~g~e~A~~L~~--~G~~vV~vv~~~~~~--------~~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~  391 (985)
T TIGR01372       322 VATNNDSAYRAAADLLA--AGIAVVAIIDARADV--------SPEARAEARELGIEVLTGHVVAATEGGKRVSGVAVARN  391 (985)
T ss_pred             EECCCHHHHHHHHHHHH--cCCceEEEEccCcch--------hHHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEec
Confidence            99999999999999985  35 567888766543        34466788999999999999998876543  34432  


Q ss_pred             --CCcEEecCEEEEccCCCCCchhhhccccccccCCC--CcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHH
Q 017664          219 --SGETIDTDCHFMCTGKAMASSWLRETILKDSLDGR--GRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALV  294 (368)
Q Consensus       219 --~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~--g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~  294 (368)
                        +++++++|.|+++.|..|+.+++.+.+..+..++.  +++.      .++.|+||++||+++..   .+..|..+|+.
T Consensus       392 ~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~~~~~~------~t~v~gVyaaGD~~g~~---~~~~A~~eG~~  462 (985)
T TIGR01372       392 GGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAIAAFLP------GDAVQGCILAGAANGLF---GLAAALADGAA  462 (985)
T ss_pred             CCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccccCceec------CCCCCCeEEeeccCCcc---CHHHHHHHHHH
Confidence              45689999999999999999998877764444432  2222      23689999999999764   46779999999


Q ss_pred             HHHHHHHHHcC
Q 017664          295 TAKNLKKLMMG  305 (368)
Q Consensus       295 aa~~i~~~l~g  305 (368)
                      ||..|+..+..
T Consensus       463 Aa~~i~~~lg~  473 (985)
T TIGR01372       463 AGAAAARAAGF  473 (985)
T ss_pred             HHHHHHHHcCC
Confidence            99999987754

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=3.3e-26  Score=185.79  Aligned_cols=279  Identities=19%  Similarity=0.266  Sum_probs=197.6

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeec-cceee-------------eecccccccceeecccc
Q 017664           12 GLVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITW-ASLRA-------------VVEPSFAVRSVINHGDY   76 (368)
Q Consensus        12 ~~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~-~~~~~-------------~~~~~~~~~~~~~~~~~   76 (368)
                      .|..+.+|+|||+|||+..||.++.+ ..+-+|+|..-.-+..+ .++..             ..++.+..+...+...|
T Consensus         4 ~~~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~   83 (322)
T KOG0404|consen    4 GMTHNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERF   83 (322)
T ss_pred             cceeeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhh
Confidence            34456699999999999999998874 89999999653322211 11111             11111111111111112


Q ss_pred             cCceeEEEeEEEEeecc---EEEecCCeEEEecEEEEecCCC---CCCCCch-----HHHHHHHHHH--HHHHhcCCeEE
Q 017664           77 LSNVKIVVSTAVSITDT---EVVTAGGQTFVYDYVVVATGHV---ESVPKSR-----TERLSQYEKD--FEKVKSANSVL  143 (368)
Q Consensus        77 ~~~~~~~~~~~~~~~~~---~v~~~~g~~~~~d~lvlAtG~~---~~~p~~~-----~~~~~~~~~~--~~~~~~~~~v~  143 (368)
                        +.+++...+..++..   ....++.+.+.+|.+|+|||..   ..+|+..     .+.+..+.-+  ...++++|..+
T Consensus        84 --Gt~i~tEtVskv~~sskpF~l~td~~~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAVCDGaapifrnk~la  161 (322)
T KOG0404|consen   84 --GTEIITETVSKVDLSSKPFKLWTDARPVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPLA  161 (322)
T ss_pred             --cceeeeeehhhccccCCCeEEEecCCceeeeeEEEecccceeeeecCCCCcchHHhcccchhhcccCcchhhcCCeeE
Confidence              677888888777743   3333467789999999999998   4567652     1223333222  22356789999


Q ss_pred             EEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHH-HcCCcEEEecceeeecccCCC--------e
Q 017664          144 IVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWL-TSKKVEVILNQSVTLNTISDG--------L  214 (368)
Q Consensus       144 VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l-~~~gv~i~~~~~v~~i~~~~~--------~  214 (368)
                      |||||.+++|-|..|.+  -+.+|++++|++++      +.+..++++. +..+|++++++.+.+...+.+        .
T Consensus       162 VIGGGDsA~EEA~fLtk--yaskVyii~Rrd~f------RAs~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn  233 (322)
T KOG0404|consen  162 VIGGGDSAMEEALFLTK--YASKVYIIHRRDHF------RASKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKN  233 (322)
T ss_pred             EEcCcHHHHHHHHHHHh--hccEEEEEEEhhhh------hHHHHHHHHHhcCCCeEEEechhhhhhccCcccccceEEEe
Confidence            99999999999999985  47899999999987      5666676655 457999999998876665533        2


Q ss_pred             EEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHH
Q 017664          215 IETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALV  294 (368)
Q Consensus       215 v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~  294 (368)
                      +.+.+-+.++.+-++++.|..|++.+++.   .+++|++|++.+.+.--.++.|++||+||+.... -.++.+|...|.+
T Consensus       234 ~~tge~~dl~v~GlFf~IGH~Pat~~l~g---qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~k-yRQAvTaAgsGci  309 (322)
T KOG0404|consen  234 VKTGEETDLPVSGLFFAIGHSPATKFLKG---QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKK-YRQAVTAAGSGCI  309 (322)
T ss_pred             cccCcccccccceeEEEecCCchhhHhcC---ceeeccCceEEeccCcccccccceeeccccchHH-HHHHHhhhccchh
Confidence            33444468999999999999999999886   3378999999998654444899999999998753 2477788888888


Q ss_pred             HHHHHHHHHc
Q 017664          295 TAKNLKKLMM  304 (368)
Q Consensus       295 aa~~i~~~l~  304 (368)
                      +|...-++|.
T Consensus       310 aaldAe~yL~  319 (322)
T KOG0404|consen  310 AALDAERYLT  319 (322)
T ss_pred             hhhhHHHHhh
Confidence            8888777665

>PLN02852 ferredoxin-NADP+ reductase

Probab=99.94  E-value=1.3e-25  Score=211.56  Aligned_cols=283  Identities=15%  Similarity=0.119  Sum_probs=176.7

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh---cCCcEEEEcCCCceeeeccceeeeeccccccc--ceeeccccc--CceeEEEe
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ---SFADVVLIDEKEYFEITWASLRAVVEPSFAVR--SVINHGDYL--SNVKIVVS   85 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~---~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~   85 (368)
                      ....++|+|||||||||+||..|+   +|++|+|+|+.+..++   .++..+.+.+...  ....+..++  .+++++..
T Consensus        23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgG---lvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~n   99 (491)
T PLN02852         23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFG---LVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGN   99 (491)
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcc---eEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcC
Confidence            345679999999999999999986   4999999999987653   3333332332211  011111111  13454432


Q ss_pred             EEEEeeccEEEecCCeEEEecEEEEecCCCC----CCCCchHHHHHHHHHH-------------HHHHhcCCeEEEEcCc
Q 017664           86 TAVSITDTEVVTAGGQTFVYDYVVVATGHVE----SVPKSRTERLSQYEKD-------------FEKVKSANSVLIVGGG  148 (368)
Q Consensus        86 ~~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~----~~p~~~~~~~~~~~~~-------------~~~~~~~~~v~VvG~g  148 (368)
                      ..+.   ..+...+. ...||+||+|||+.+    .+|+.+..++.....+             ......+++++|||+|
T Consensus       100 v~vg---~dvtl~~L-~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgG  175 (491)
T PLN02852        100 VTLG---RDVSLSEL-RDLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQG  175 (491)
T ss_pred             EEEC---ccccHHHH-hhhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCC
Confidence            2221   12333333 247999999999973    3555433222222111             1112357899999999


Q ss_pred             hhHHHHHHHHhhh------------------C-CCCeEEEEecCcccc-cccCch-------------------------
Q 017664          149 PTGVELAGEIAVD------------------F-PDKKVILVHRGPKLL-EFVGSR-------------------------  183 (368)
Q Consensus       149 ~~~~e~a~~l~~~------------------~-~~~~v~~i~~~~~~l-~~~~~~-------------------------  183 (368)
                      ++|+|+|..|.+.                  . .-.+|+++.|+...- ++..++                         
T Consensus       176 nvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~  255 (491)
T PLN02852        176 NVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPED  255 (491)
T ss_pred             HHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccch
Confidence            9999999988642                  1 235799999875310 000001                         


Q ss_pred             ------------hHHHHHHHHHc---------CCcEEEecceeeeccc--C-CC---eEEc-------C----------C
Q 017664          184 ------------ASQIALDWLTS---------KKVEVILNQSVTLNTI--S-DG---LIET-------S----------S  219 (368)
Q Consensus       184 ------------~~~~~~~~l~~---------~gv~i~~~~~v~~i~~--~-~~---~v~~-------~----------~  219 (368)
                                  ..+.+.+...+         +++.|++...+.+|..  + ++   .+++       .          +
T Consensus       256 ~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~t  335 (491)
T PLN02852        256 EEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGT  335 (491)
T ss_pred             hhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCC
Confidence                        11112222222         5799999998888863  1 12   2221       1          2


Q ss_pred             C--cEEecCEEEEccCCC--CCchh-hhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHH
Q 017664          220 G--ETIDTDCHFMCTGKA--MASSW-LRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALV  294 (368)
Q Consensus       220 g--~~i~~d~vi~a~G~~--p~~~~-~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~  294 (368)
                      |  +++++|.||.+.|+.  |...+ +... .++..+.+|++.+|+.++| +.|+|||+|||...|. ..+..++.+|+.
T Consensus       336 ge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~-~gv~~n~~G~V~~d~~~~T-~ipGvyAaGDi~~Gp~-gvI~t~~~dA~~  412 (491)
T PLN02852        336 GEFEDLPCGLVLKSIGYKSLPVDGLPFDHK-RGVVPNVHGRVLSSASGAD-TEPGLYVVGWLKRGPT-GIIGTNLTCAEE  412 (491)
T ss_pred             CCEEEEECCEEEEeecCCCCCCCCCccccC-cCeeECCCceEEeCCCCcc-CCCCEEEeeeEecCCC-CeeeecHhhHHH
Confidence            3  269999999999998  44432 2221 1224567899999988887 7999999999997653 366789999999


Q ss_pred             HHHHHHHHHcC
Q 017664          295 TAKNLKKLMMG  305 (368)
Q Consensus       295 aa~~i~~~l~g  305 (368)
                      ++.+|..++..
T Consensus       413 ta~~i~~d~~~  423 (491)
T PLN02852        413 TVASIAEDLEQ  423 (491)
T ss_pred             HHHHHHHHHHc
Confidence            99999998764

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=99.94  E-value=2.4e-25  Score=189.86  Aligned_cols=314  Identities=18%  Similarity=0.246  Sum_probs=207.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhc---CCcEEEEcCCCceeeecc--ceeeeecccccccceeeccccc-CceeEEEeEE
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYFEITWA--SLRAVVEPSFAVRSVINHGDYL-SNVKIVVSTA   87 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   87 (368)
                      .++++++|||||.+|+++|..+.+   .-+|.|+|+.+...+.+.  .....+.. + .....+..+.. .+..|+++.+
T Consensus        37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~-l-~~srr~~a~liP~~a~wi~ekv  114 (446)
T KOG3851|consen   37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKS-L-DSSRRKQASLIPKGATWIKEKV  114 (446)
T ss_pred             ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhh-h-hhccCcccccccCCcHHHHHHH
Confidence            357899999999999999998864   468999999987654432  22211111 0 01111111221 3677888888


Q ss_pred             EEeecc--EEEecCCeEEEecEEEEecCCC---CCCCCch-------------HHHHHHHHHHHHHHhcCCeEEEEcCch
Q 017664           88 VSITDT--EVVTAGGQTFVYDYVVVATGHV---ESVPKSR-------------TERLSQYEKDFEKVKSANSVLIVGGGP  149 (368)
Q Consensus        88 ~~~~~~--~v~~~~g~~~~~d~lvlAtG~~---~~~p~~~-------------~~~~~~~~~~~~~~~~~~~v~VvG~g~  149 (368)
                      ..+++.  +|++.+|++|+|||+|+|+|..   ..+++..             ...++...........+.-+.-..+++
T Consensus       115 ~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntp  194 (446)
T KOG3851|consen  115 KEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTP  194 (446)
T ss_pred             HhcCCCcCeEEccCCcEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHHhccCCceEEecCCCc
Confidence            888764  8999999999999999999998   2344421             122333333444444454454444433


Q ss_pred             h--------HHHHHHHHhh-hCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCe--EE-c
Q 017664          150 T--------GVELAGEIAV-DFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGL--IE-T  217 (368)
Q Consensus       150 ~--------~~e~a~~l~~-~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~--v~-~  217 (368)
                      +        .+-++..+.+ +....++.++....-..-+.-....+.+++..++++|++.......++..++..  ++ +
T Consensus       195 iKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFgVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L  274 (446)
T KOG3851|consen  195 IKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFGVKHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFENL  274 (446)
T ss_pred             cccCCCchhhhhhhHHHHHHhCccccccEEEecCccceecHHHHHHHHHHHHHhcceEeeeccceEEEeccchhhHHHhc
Confidence            2        3333333332 222335555554322111233466788889999999999988888877776652  22 2


Q ss_pred             CC-C--cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCC-CeeecCCCCeEEecccCCCCccchHHHHHHHHH
Q 017664          218 SS-G--ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDE-NLRVRGFKNVFAIGDITDIPEIKQGYLAQKHAL  293 (368)
Q Consensus       218 ~~-g--~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~-~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~  293 (368)
                      ++ |  ++++++++.+..... .++++..+.+   .|+.||+.||+ ++|++++||||++|||.+.|..|++..+..|..
T Consensus       275 ~kPG~t~ei~yslLHv~Ppms-~pe~l~~s~~---adktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsKTaAAvaaq~~  350 (446)
T KOG3851|consen  275 DKPGVTEEIEYSLLHVTPPMS-TPEVLANSDL---ADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSKTAAAVAAQSP  350 (446)
T ss_pred             CCCCceeEEeeeeeeccCCCC-ChhhhhcCcc---cCcccceecChhhhccccCCCceeeccccCCCchhhHHHHHhcCc
Confidence            22 5  478899988887766 3577777764   67889999996 699999999999999999999999988899999


Q ss_pred             HHHHHHHHHHcCCCCCC-ccccccCCCeEEEeecCCcceeEecC
Q 017664          294 VTAKNLKKLMMGRNKGT-MATYKPGYPIALVSLGRREGVAHFPF  336 (368)
Q Consensus       294 ~aa~~i~~~l~g~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~  336 (368)
                      ++-+|+.+.++|+.+.. ...|+..|  .++|.+ +-.+++|++
T Consensus       351 vv~~nl~~~m~g~~pt~~ydGYtSCP--lvtgy~-k~iLaeF~y  391 (446)
T KOG3851|consen  351 VVDKNLTQVMQGKRPTMKYDGYTSCP--LVTGYN-KVILAEFDY  391 (446)
T ss_pred             hhhhhHHHHhcCCCcceeecCcccCc--eeeccc-eEEEEeecc
Confidence            99999999999976422 22344322  333443 345666655

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=99.92  E-value=2e-24  Score=190.33  Aligned_cols=285  Identities=21%  Similarity=0.264  Sum_probs=205.5

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh---cCCcEEEEcCCCceeeecccee----eeecccc------------cccceeec
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ---SFADVVLIDEKEYFEITWASLR----AVVEPSF------------AVRSVINH   73 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~---~g~~v~lie~~~~~~~~~~~~~----~~~~~~~------------~~~~~~~~   73 (368)
                      .+++...+|||+|.+..+++...+   .+.+|.+|..++.+.+....+.    ..-++..            ....+++-
T Consensus       175 ~p~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffep  254 (659)
T KOG1346|consen  175 LPKHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEP  254 (659)
T ss_pred             CcccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecC
Confidence            345667999999999998888776   3889999988877654322111    1111100            00011111


Q ss_pred             cccc-----------CceeEEEe-EEEEee--ccEEEecCCeEEEecEEEEecCCCCCCCC-ch------------HHHH
Q 017664           74 GDYL-----------SNVKIVVS-TAVSIT--DTEVVTAGGQTFVYDYVVVATGHVESVPK-SR------------TERL  126 (368)
Q Consensus        74 ~~~~-----------~~~~~~~~-~~~~~~--~~~v~~~~g~~~~~d~lvlAtG~~~~~p~-~~------------~~~~  126 (368)
                      ..|+           .++.+.++ .++.++  .+.|.++||.+|.||.++||||.+|.-.+ ++            ....
T Consensus       255 d~FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p  334 (659)
T KOG1346|consen  255 DGFFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYP  334 (659)
T ss_pred             CcceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecc
Confidence            1111           14555555 456666  45889999999999999999999986433 21            1123


Q ss_pred             HHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCC--CCeEEEEecCccccc-ccCchhHHHHHHHHHcCCcEEEecc
Q 017664          127 SQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFP--DKKVILVHRGPKLLE-FVGSRASQIALDWLTSKKVEVILNQ  203 (368)
Q Consensus       127 ~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~--~~~v~~i~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~  203 (368)
                      .++....+.....++|.|||+|..|.|+|..|.+++.  +.+|+-+......+. -++.-+++...+.+++.||.++.+.
T Consensus       335 ~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna  414 (659)
T KOG1346|consen  335 ADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNA  414 (659)
T ss_pred             hHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccch
Confidence            4444444444556899999999999999999997665  446655544333222 3455677888889999999999999


Q ss_pred             eeeecccCCC--eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCC-CcEEeCCCeeecCCCCeEEecccCCCC
Q 017664          204 SVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGR-GRLMVDENLRVRGFKNVFAIGDITDIP  280 (368)
Q Consensus       204 ~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~-g~i~vd~~~~~~~~~~ifa~GD~~~~~  280 (368)
                      .|.++....+  .+.+.||.++..|.|++|+|-.||.++....+|  +.|++ |...||..|+.  ..|||++||++...
T Consensus       415 ~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgL--eiD~~lGGfrvnaeL~a--r~NvwvAGdaacF~  490 (659)
T KOG1346|consen  415 KVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEASGL--EIDEKLGGFRVNAELKA--RENVWVAGDAACFE  490 (659)
T ss_pred             hhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhcccccc--eeecccCcEEeeheeec--ccceeeecchhhhh
Confidence            9998877655  788999999999999999999999999999988  55665 78999999998  68999999998876


Q ss_pred             ccchH-------HHHHHHHHHHHHHHHH
Q 017664          281 EIKQG-------YLAQKHALVTAKNLKK  301 (368)
Q Consensus       281 ~~~~~-------~~a~~~g~~aa~~i~~  301 (368)
                      .+.++       -.|+-+||.|++|+..
T Consensus       491 D~~LGrRRVehhdhavvSGRLAGENMtg  518 (659)
T KOG1346|consen  491 DGVLGRRRVEHHDHAVVSGRLAGENMTG  518 (659)
T ss_pred             cccccceeccccccceeeceeccccccc
Confidence            55444       2588899999999974

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.6e-25  Score=193.09  Aligned_cols=273  Identities=25%  Similarity=0.318  Sum_probs=188.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccc---eeee------ecccccccceeecccccCceeEE
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWAS---LRAV------VEPSFAVRSVINHGDYLSNVKIV   83 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~---~~~~------~~~~~~~~~~~~~~~~~~~~~~~   83 (368)
                      ...+||+||||||||-+||.+.+ +|.+.=++-.  .||+....   +..+      .++.+....-...++|  .+++.
T Consensus       209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ae--rfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y--~vDim  284 (520)
T COG3634         209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAE--RFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQY--DVDVM  284 (520)
T ss_pred             cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhh--hhCCeeccccchhheeccccccchHHHHHHHHHHhhc--Cchhh
Confidence            34699999999999999998765 6877655532  24433211   1111      1121111111111222  23332


Q ss_pred             Ee-EEEEeec-------cEEEecCCeEEEecEEEEecCCC---CCCCCchH---HHHHHHHHHHHHHhcCCeEEEEcCch
Q 017664           84 VS-TAVSITD-------TEVVTAGGQTFVYDYVVVATGHV---ESVPKSRT---ERLSQYEKDFEKVKSANSVLIVGGGP  149 (368)
Q Consensus        84 ~~-~~~~~~~-------~~v~~~~g~~~~~d~lvlAtG~~---~~~p~~~~---~~~~~~~~~~~~~~~~~~v~VvG~g~  149 (368)
                      +. ++..+.+       ..+.+.+|..++.+.+|+|||.+   .++|+.+.   +.+..+..+.-.+.++|+|.|||||+
T Consensus       285 n~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGPLF~gK~VAVIGGGN  364 (520)
T COG3634         285 NLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGN  364 (520)
T ss_pred             hhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCcccCCceEEEECCCc
Confidence            21 2223322       26888999999999999999998   57887542   33444445556678899999999999


Q ss_pred             hHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHc-CCcEEEecceeeecccCCC---eEEc---CCC--
Q 017664          150 TGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTS-KKVEVILNQSVTLNTISDG---LIET---SSG--  220 (368)
Q Consensus       150 ~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~---~v~~---~~g--  220 (368)
                      +|+|.|..|+  -.-..|++++-.+.+      ..-.-+++.++. .+++++++..-++|..++.   ++..   .+|  
T Consensus       365 SGvEAAIDLA--Giv~hVtllEF~~eL------kAD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~  436 (520)
T COG3634         365 SGVEAAIDLA--GIVEHVTLLEFAPEL------KADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEE  436 (520)
T ss_pred             chHHHHHhHH--hhhheeeeeecchhh------hhHHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCce
Confidence            9999999998  345678888744433      223445566655 6899999999998888744   2222   223  


Q ss_pred             cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHH
Q 017664          221 ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLK  300 (368)
Q Consensus       221 ~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~  300 (368)
                      ..++-+-|++-.|..||++|++.. +  +++++|-|.||....| +.|+|||+|||...|. |+...|+-+|..|+-+..
T Consensus       437 ~~l~LeGvFVqIGL~PNT~WLkg~-v--el~~rGEIivD~~g~T-svpGvFAAGD~T~~~y-KQIIIamG~GA~AaL~AF  511 (520)
T COG3634         437 HHLELEGVFVQIGLLPNTEWLKGA-V--ELNRRGEIIVDARGET-NVPGVFAAGDCTTVPY-KQIIIAMGEGAKASLSAF  511 (520)
T ss_pred             eEEEeeeeEEEEecccChhHhhch-h--hcCcCccEEEecCCCc-CCCceeecCcccCCcc-ceEEEEecCcchhhhhhh
Confidence            367888999999999999999876 3  7889999999999999 8999999999998754 466667777777776665


Q ss_pred             HHH
Q 017664          301 KLM  303 (368)
Q Consensus       301 ~~l  303 (368)
                      .+|
T Consensus       512 DyL  514 (520)
T COG3634         512 DYL  514 (520)
T ss_pred             hhh
Confidence            554

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.92  E-value=3.3e-24  Score=202.80  Aligned_cols=273  Identities=18%  Similarity=0.219  Sum_probs=166.3

Q ss_pred             cCCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeee-----------------ec----------
Q 017664           11 AGLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAV-----------------VE----------   62 (368)
Q Consensus        11 ~~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~-----------------~~----------   62 (368)
                      +.+...++|+|||||+|||+||++|+ .|++|+|+|+++.+|+.|.--...                 ..          
T Consensus         5 ~~~~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~   84 (461)
T PLN02172          5 QNPINSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRE   84 (461)
T ss_pred             ccCCCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHh
Confidence            45566789999999999999999997 599999999999988777321100                 00          


Q ss_pred             ----cccccc-----------ceeecc---cccC------cee--E-EEeEEEEeecc----EEEecCC----eEEEecE
Q 017664           63 ----PSFAVR-----------SVINHG---DYLS------NVK--I-VVSTAVSITDT----EVVTAGG----QTFVYDY  107 (368)
Q Consensus        63 ----~~~~~~-----------~~~~~~---~~~~------~~~--~-~~~~~~~~~~~----~v~~~~g----~~~~~d~  107 (368)
                          .+++..           .+....   +|+.      ++.  + .+.+|..+++.    .|.+.++    .+..||+
T Consensus        85 ~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~  164 (461)
T PLN02172         85 CMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDA  164 (461)
T ss_pred             hccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCE
Confidence                001000           000000   0110      222  1 34566666542    4544322    2467999


Q ss_pred             EEEecCC--CCCCCCchHH------HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc
Q 017664          108 VVVATGH--VESVPKSRTE------RLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF  179 (368)
Q Consensus       108 lvlAtG~--~~~~p~~~~~------~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~  179 (368)
                      ||+|||.  .|.+|.+++.      .++..........++++|+|||+|.+|+|+|.+|..  .+++|++++|+..... 
T Consensus       165 VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~--~a~~V~l~~r~~~~~~-  241 (461)
T PLN02172        165 VVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAK--VAKEVHIASRASESDT-  241 (461)
T ss_pred             EEEeccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHH--hCCeEEEEEeeccccc-
Confidence            9999994  5776665421      112221112233468999999999999999999995  4789999998764311 


Q ss_pred             cCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeC
Q 017664          180 VGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVD  259 (368)
Q Consensus       180 ~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd  259 (368)
                               .+.+......+..+..|..+. .++.|++.||+.+++|.||+|||++++.+|+...+. +..+.+.-...-
T Consensus       242 ---------~~~~~~~~~~v~~~~~I~~~~-~~g~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~~-i~v~~~~v~~Ly  310 (461)
T PLN02172        242 ---------YEKLPVPQNNLWMHSEIDTAH-EDGSIVFKNGKVVYADTIVHCTGYKYHFPFLETNGY-MRIDENRVEPLY  310 (461)
T ss_pred             ---------cccCcCCCCceEECCccccee-cCCeEEECCCCCccCCEEEECCcCCccccccCcccc-eeeCCCcchhhH
Confidence                     001111223445556665443 234799999999999999999999999988764321 112211100111


Q ss_pred             CCeeecC-CCCeEEecccCCCCccchHHHHHHHHHHHHHHHH
Q 017664          260 ENLRVRG-FKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLK  300 (368)
Q Consensus       260 ~~~~~~~-~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~  300 (368)
                      ++.-... .|+++.+|-.....   ....+..|++.+|+-+.
T Consensus       311 ~~~f~~~~~p~LafiG~~~~~~---~f~~~E~Qa~~~a~v~s  349 (461)
T PLN02172        311 KHVFPPALAPGLSFIGLPAMGI---QFVMFEIQSKWVAAVLS  349 (461)
T ss_pred             HhhcCCCCCCcEEEEecccccc---CchhHHHHHHHHHHHHc
Confidence            1211223 48999999764332   23567788888777665

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.85  E-value=2.8e-20  Score=184.08  Aligned_cols=267  Identities=14%  Similarity=0.106  Sum_probs=152.5

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeee---------ccc---------------e-eeeecccc
Q 017664           12 GLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEIT---------WAS---------------L-RAVVEPSF   65 (368)
Q Consensus        12 ~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~---------~~~---------------~-~~~~~~~~   65 (368)
                      ...+.++|+|||||||||+||++|+ +|++|+++|+.+..+.+         |..               + ...+...+
T Consensus       379 ~~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp~R~  458 (1028)
T PRK06567        379 KEPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGITVRW  458 (1028)
T ss_pred             CCCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCccccc
Confidence            3456789999999999999999998 59999999987532221         110               0 00000001


Q ss_pred             cccceeeccccc---CceeEEEeEEEEeeccEEEecCCeEEEecEEEEecCC-CCC---CCCchHHHHHHHHHHHHHH--
Q 017664           66 AVRSVINHGDYL---SNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGH-VES---VPKSRTERLSQYEKDFEKV--  136 (368)
Q Consensus        66 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lvlAtG~-~~~---~p~~~~~~~~~~~~~~~~~--  136 (368)
                      ....+......+   .++++..+.....+   +...+-....||+|+||||+ .|.   +|+.+..++.+...+....  
T Consensus       459 ~k~~l~~i~~il~~g~~v~~~~gv~lG~d---it~edl~~~gyDAV~IATGA~kpr~L~IPGeda~GV~sA~DfL~~l~~  535 (1028)
T PRK06567        459 DKNNLDILRLILERNNNFKYYDGVALDFN---ITKEQAFDLGFDHIAFCIGAGQPKVLDIENFEAKGVKTASDFLMTLQS  535 (1028)
T ss_pred             hHHHHHHHHHHHhcCCceEEECCeEECcc---CCHHHHhhcCCCEEEEeCCCCCCCCCCCCCccCCCeEEHHHHHHHHhh
Confidence            100000000000   02233222221111   11222234679999999999 454   4444333333333322221  


Q ss_pred             ------------hcCCeEEEEcCchhHHHHHHHHhhh-------------------------------------------
Q 017664          137 ------------KSANSVLIVGGGPTGVELAGEIAVD-------------------------------------------  161 (368)
Q Consensus       137 ------------~~~~~v~VvG~g~~~~e~a~~l~~~-------------------------------------------  161 (368)
                                  ..+++|+|||||++|+|+|......                                           
T Consensus       536 ~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~~g~~~~~~~  615 (1028)
T PRK06567        536 GGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKLFKEAKNNEE  615 (1028)
T ss_pred             cccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHHhhcchhccch
Confidence                        1357999999999999999833210                                           


Q ss_pred             -----CCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCC-C---eEEc---------------
Q 017664          162 -----FPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISD-G---LIET---------------  217 (368)
Q Consensus       162 -----~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~---~v~~---------------  217 (368)
                           .....|++++|+..--.........++. ...+.||+++++..+.++..++ +   .+++               
T Consensus       616 v~~l~~~~G~VtIvYRr~~~empA~~~~~eEv~-~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~  694 (1028)
T PRK06567        616 LRKVFNKLGGATVYYRGRLQDSPAYKLNHEELI-YALALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQ  694 (1028)
T ss_pred             hhhhhccCCceEEEecCChhhCCCCCCCHHHHH-HHHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEeccccccccccc
Confidence                 0011288888875421111111133443 3445699999999998887653 3   1111               


Q ss_pred             C---------------CCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCcc
Q 017664          218 S---------------SGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEI  282 (368)
Q Consensus       218 ~---------------~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~  282 (368)
                      .               ...+++||.||+|+|..|++.+...               +..+-. +.+++|+.         
T Consensus       695 ~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~~~---------------~~s~~~-d~~~~f~G---------  749 (1028)
T PRK06567        695 SHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFDED---------------KYSYFG-DCNPKYSG---------  749 (1028)
T ss_pred             ccccccCCcCcccCCCccccccCCEEEEecccCCccccccc---------------cccccc-CCCCcccc---------
Confidence            1               1137999999999999998765210               001111 34555544         


Q ss_pred             chHHHHHHHHHHHHHHHHHHHcCCCC
Q 017664          283 KQGYLAQKHALVTAKNLKKLMMGRNK  308 (368)
Q Consensus       283 ~~~~~a~~~g~~aa~~i~~~l~g~~~  308 (368)
                       +...|+.+|+.++.+|.++|...++
T Consensus       750 -tvv~A~as~k~~~~~i~~~l~~~~~  774 (1028)
T PRK06567        750 -SVVKALASSKEGYDAINKKLINNNP  774 (1028)
T ss_pred             -HHHHHHHHHHhHHHHHHHHHhhCCC
Confidence             5788999999999999999876543

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.85  E-value=7.7e-21  Score=182.20  Aligned_cols=273  Identities=23%  Similarity=0.317  Sum_probs=135.5

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeecccee-----------eee---------ccccc--cc--ce
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLR-----------AVV---------EPSFA--VR--SV   70 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~-----------~~~---------~~~~~--~~--~~   70 (368)
                      +++|+|||||++||++|+.|. .|++++++|+++.+|+.|.--.           ...         -.+++  ..  .+
T Consensus         1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f   80 (531)
T PF00743_consen    1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDF   80 (531)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCC
Confidence            368999999999999999987 6999999999999998884210           000         00000  00  00


Q ss_pred             eecc---ccc----------CceeEEEeEEEEeec---------cEEEecC-C--eEEEecEEEEecCCC--CCCCC---
Q 017664           71 INHG---DYL----------SNVKIVVSTAVSITD---------TEVVTAG-G--QTFVYDYVVVATGHV--ESVPK---  120 (368)
Q Consensus        71 ~~~~---~~~----------~~~~~~~~~~~~~~~---------~~v~~~~-g--~~~~~d~lvlAtG~~--~~~p~---  120 (368)
                      ....   +|+          ..++ .+.+|+.+..         ..|.+.+ +  ++..||+|++|||..  |.+|.   
T Consensus        81 ~~~~~v~~Yl~~Ya~~f~L~~~I~-fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~  159 (531)
T PF00743_consen   81 PSHSEVLEYLESYAEHFGLRKHIR-FNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSF  159 (531)
T ss_dssp             EBHHHHHHHHHHHHHHTTGGGGEE-TSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----
T ss_pred             CCHHHHHHHHHHHHhhhCCcceEE-EccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhh
Confidence            0000   010          1111 1223333321         1455543 3  345799999999987  66553   


Q ss_pred             --ch---HHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc-cccc--------------
Q 017664          121 --SR---TERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL-LEFV--------------  180 (368)
Q Consensus       121 --~~---~~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~-l~~~--------------  180 (368)
                        ++   ++-+++.........++|+|+|||+|.||.|+|.+++.  ...+|++..|+... +|..              
T Consensus       160 ~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~--~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R  237 (531)
T PF00743_consen  160 PGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSR--VAKKVYLSTRRGAWVLPRYWDNGYPFDMVFSTR  237 (531)
T ss_dssp             CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTT--TSCCEEEECC-----------------------
T ss_pred             hhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHH--hcCCeEEEEeccccccccccccccccccccccc
Confidence              21   11122222222345679999999999999999999985  46788888776431 1110              


Q ss_pred             ---------CchhHHH---------------------------------HHHHHHcCCcEEEecceeeecccCCCeEEcC
Q 017664          181 ---------GSRASQI---------------------------------ALDWLTSKKVEVILNQSVTLNTISDGLIETS  218 (368)
Q Consensus       181 ---------~~~~~~~---------------------------------~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~  218 (368)
                               +..+.+.                                 +...+....|+++  ..|.++  .++++.+.
T Consensus       238 ~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk--~~I~~~--~~~~v~F~  313 (531)
T PF00743_consen  238 FSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVK--PDIKRF--TENSVIFE  313 (531)
T ss_dssp             -------------------------------------------------------------E--E-EEEE---SSEEEET
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccc--cccccccc
Confidence                     0001111                                 1111111222222  112222  22378899


Q ss_pred             CCcEE-ecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeec--CCCCeEEecccCCCCccchHHHHHHHHHHH
Q 017664          219 SGETI-DTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVR--GFKNVFAIGDITDIPEIKQGYLAQKHALVT  295 (368)
Q Consensus       219 ~g~~i-~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~--~~~~ifa~GD~~~~~~~~~~~~a~~~g~~a  295 (368)
                      ||+++ ++|.||+|||+..+.+|++++.+.  . .++.+..-.++-.+  .+|++..+|=+.....  ....+..|++.+
T Consensus       314 DGs~~e~vD~II~~TGY~~~fpFL~~~~~~--~-~~~~~~LYk~vfp~~~~~ptLafIG~~~~~g~--~fp~~ElQArw~  388 (531)
T PF00743_consen  314 DGSTEEDVDVIIFCTGYKFSFPFLDESLIK--V-DDNRVRLYKHVFPPNLDHPTLAFIGLVQPFGS--IFPIFELQARWA  388 (531)
T ss_dssp             TSEEEEE-SEEEE---EE---TTB-TTTT---S--SSSSSEETTTEETETTSTTEEESS-SBSSS---HHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccc--c-cccccccccccccccccccccccccccccccc--cccccccccccc
Confidence            99875 699999999999999999876442  2 22333333443322  3589999998753221  234567777777


Q ss_pred             HHHHH
Q 017664          296 AKNLK  300 (368)
Q Consensus       296 a~~i~  300 (368)
                      |+-+.
T Consensus       389 a~v~s  393 (531)
T PF00743_consen  389 ARVFS  393 (531)
T ss_dssp             HHHHT
T ss_pred             ccccc
Confidence            66554

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=99.85  E-value=9.9e-21  Score=176.88  Aligned_cols=290  Identities=21%  Similarity=0.198  Sum_probs=183.3

Q ss_pred             eeccCCcC-CCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccceeeeecc-cccccceeecccccC--c
Q 017664            5 LWGSTAAG-LVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLRAVVEP-SFAVRSVINHGDYLS--N   79 (368)
Q Consensus         5 ~~~~~~~~-~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~   79 (368)
                      .|....++ .....+|.|||||||||++|..|.+ |++|+++|+.+..|..   +...+.. ....+......+++.  +
T Consensus       111 g~i~~~~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGl---l~yGIP~~kl~k~i~d~~i~~l~~~G  187 (457)
T COG0493         111 GWIPGELPGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGL---LLYGIPDFKLPKDILDRRLELLERSG  187 (457)
T ss_pred             CCCCCCCCCCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCcee---EEecCchhhccchHHHHHHHHHHHcC
Confidence            45555433 4456899999999999999999984 9999999999987633   1111111 111122222222222  4


Q ss_pred             eeEEEeEEEEeeccEEEecCCeEEEecEEEEecCCC-C---CCCCchHHHHHHHHHHHHHH---------------hcCC
Q 017664           80 VKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHV-E---SVPKSRTERLSQYEKDFEKV---------------KSAN  140 (368)
Q Consensus        80 ~~~~~~~~~~~~~~~v~~~~g~~~~~d~lvlAtG~~-~---~~p~~~~~~~~~~~~~~~~~---------------~~~~  140 (368)
                      ++|.....+..+   ++.. ...-.||++++|+|+. |   .+|+.+...++.....+.+.               ..++
T Consensus       188 v~~~~~~~vG~~---it~~-~L~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk  263 (457)
T COG0493         188 VEFKLNVRVGRD---ITLE-ELLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGK  263 (457)
T ss_pred             eEEEEcceECCc---CCHH-HHHHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCC
Confidence            455443333222   1111 1123579999999998 4   35554433333332222111               1239


Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc--ccccCchhHHHHHHHHHcCCcEEEecceeeecccCC-CeEE-
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL--LEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISD-GLIE-  216 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~--l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~~v~-  216 (368)
                      +++|||+|.+++|++..... ....+|+.+.+...-  ...++........+...+.|+.+.......++..++ +.|. 
T Consensus       264 ~vvVIGgG~Ta~D~~~t~~r-~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~  342 (457)
T COG0493         264 RVVVIGGGDTAMDCAGTALR-LGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTG  342 (457)
T ss_pred             eEEEECCCCCHHHHHHHHhh-cCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecCCCcEee
Confidence            99999999999999977653 344478877532221  112222335556677888888888887777776543 3111 


Q ss_pred             -------cC--------------CC--cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCe-eecCCCCeEE
Q 017664          217 -------TS--------------SG--ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENL-RVRGFKNVFA  272 (368)
Q Consensus       217 -------~~--------------~g--~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~-~~~~~~~ifa  272 (368)
                             ..              .|  .++++|.++.+.|+.++..........+..+..|.+.+++.+ +| +.|++||
T Consensus       343 ~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~t-s~~~vfa  421 (457)
T COG0493         343 VKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQT-SIPGVFA  421 (457)
T ss_pred             eecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccc-cCCCeee
Confidence                   11              12  268899999999998765432222213356788999999998 66 8999999


Q ss_pred             ecccCCCCccchHHHHHHHHHHHHHHHH-HHHcC
Q 017664          273 IGDITDIPEIKQGYLAQKHALVTAKNLK-KLMMG  305 (368)
Q Consensus       273 ~GD~~~~~~~~~~~~a~~~g~~aa~~i~-~~l~g  305 (368)
                      .||+.....  +...|+.+|+.+|+.|. ..+.+
T Consensus       422 ~gD~~~g~~--~vv~ai~eGr~aak~i~~~~l~~  453 (457)
T COG0493         422 GGDAVRGAA--LVVWAIAEGREAAKAIDKELLLG  453 (457)
T ss_pred             Cceeccchh--hhhhHHhhchHHHHhhhHHHHhh
Confidence            999997643  78899999999999998 44443

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.82  E-value=1.5e-18  Score=154.07  Aligned_cols=289  Identities=20%  Similarity=0.229  Sum_probs=183.5

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhhc--CCcEEEEcCCCceeeeccceee-----------e---eccccc----------
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQS--FADVVLIDEKEYFEITWASLRA-----------V---VEPSFA----------   66 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~~--g~~v~lie~~~~~~~~~~~~~~-----------~---~~~~~~----------   66 (368)
                      |++.+|++.||-||+-|+.|..|..  +.++..+||.+.|.+.++.+..           +   ..|.-.          
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h   81 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEH   81 (436)
T ss_pred             CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHc
Confidence            5678999999999999999999984  7899999999987654433211           0   011000          


Q ss_pred             ---------ccceeeccc----------ccCceeEEEeEEE---Eeecc-----EEEecCCeEEEecEEEEecCCCCCCC
Q 017664           67 ---------VRSVINHGD----------YLSNVKIVVSTAV---SITDT-----EVVTAGGQTFVYDYVVVATGHVESVP  119 (368)
Q Consensus        67 ---------~~~~~~~~~----------~~~~~~~~~~~~~---~~~~~-----~v~~~~g~~~~~d~lvlAtG~~~~~p  119 (368)
                               +....++.+          .+..+++ ...+.   .++..     .+.+.++..+.++.|||++|.+|.+|
T Consensus        82 ~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rf-g~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~IP  160 (436)
T COG3486          82 GRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRF-GEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYIP  160 (436)
T ss_pred             chHhhhhhhhcccccHHHHHHHHHHHHhhCCcccc-CCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCCC
Confidence                     000001111          1111111 22333   22211     35667777899999999999999999


Q ss_pred             Cc----hHHHH-HHHHHH--HHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCC--eEEEEecCcccccc---------cC
Q 017664          120 KS----RTERL-SQYEKD--FEKVKSANSVLIVGGGPTGVELAGEIAVDFPDK--KVILVHRGPKLLEF---------VG  181 (368)
Q Consensus       120 ~~----~~~~~-~~~~~~--~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~--~v~~i~~~~~~l~~---------~~  181 (368)
                      +.    ..+.+ ++.+..  .......++|.|||+|.||.|+-..|....+..  ++.|+.|+..++|.         +.
T Consensus       161 ~~f~~l~~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~F~  240 (436)
T COG3486         161 PCFRSLIGERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEYFS  240 (436)
T ss_pred             hHHhCcCccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhhhhcC
Confidence            72    22222 332222  223344555999999999999999998765554  48999999877653         22


Q ss_pred             chhHHHH-----------------------------------HHHH--HcCCcEEEecceeeecccCCC---eEE-----
Q 017664          182 SRASQIA-----------------------------------LDWL--TSKKVEVILNQSVTLNTISDG---LIE-----  216 (368)
Q Consensus       182 ~~~~~~~-----------------------------------~~~l--~~~gv~i~~~~~v~~i~~~~~---~v~-----  216 (368)
                      |+..+.+                                   ++.+  ++.++.+..++.+..++..++   .+.     
T Consensus       241 P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~  320 (436)
T COG3486         241 PEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHE  320 (436)
T ss_pred             chhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceEEEEEeecc
Confidence            2222221                                   1111  245789999999999887764   222     


Q ss_pred             cCCCcEEecCEEEEccCCCCC-chhhhccccccccCCCCcEEeCCCeeecCC----CCeEEecccCCCC---ccchHHHH
Q 017664          217 TSSGETIDTDCHFMCTGKAMA-SSWLRETILKDSLDGRGRLMVDENLRVRGF----KNVFAIGDITDIP---EIKQGYLA  288 (368)
Q Consensus       217 ~~~g~~i~~d~vi~a~G~~p~-~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~----~~ifa~GD~~~~~---~~~~~~~a  288 (368)
                      +.+.++++.|.||+|||++.. +.|+....-.+.++.+|...|+++++....    ..||+.|-+....   .|.++..|
T Consensus       321 ~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~htHGig~pdLsl~a  400 (436)
T COG3486         321 TGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHTHGIGAPDLSLGA  400 (436)
T ss_pred             CCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEecccccccccCCccchHHH
Confidence            233358999999999999854 447766553346788999999998777432    3799998876542   23355556


Q ss_pred             HHHHHHHHHHHHHHHcCCC
Q 017664          289 QKHALVTAKNLKKLMMGRN  307 (368)
Q Consensus       289 ~~~g~~aa~~i~~~l~g~~  307 (368)
                      .+.+.     |++.|.|..
T Consensus       401 ~Raa~-----I~~~L~g~~  414 (436)
T COG3486         401 WRAAV-----ILNSLLGRE  414 (436)
T ss_pred             HHHHH-----HHHHHhCcC
Confidence            65543     444444654

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=99.82  E-value=2e-20  Score=181.47  Aligned_cols=287  Identities=20%  Similarity=0.214  Sum_probs=165.8

Q ss_pred             eccCCcC-CCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccceeeeecc-cccccceeeccccc--Cce
Q 017664            6 WGSTAAG-LVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLRAVVEP-SFAVRSVINHGDYL--SNV   80 (368)
Q Consensus         6 ~~~~~~~-~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~   80 (368)
                      |+-+.|+ ..+.++|.|||+|||||+||-.|.+ |+-|+|+||.+..|+.   +...+.. .+......++.+++  .++
T Consensus      1774 wm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggl---l~ygipnmkldk~vv~rrv~ll~~egi 1850 (2142)
T KOG0399|consen 1774 WMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGL---LMYGIPNMKLDKFVVQRRVDLLEQEGI 1850 (2142)
T ss_pred             CCccCCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCce---eeecCCccchhHHHHHHHHHHHHhhCc
Confidence            6666654 4457899999999999999999986 9999999999988733   2222111 11111122222222  245


Q ss_pred             eEEEeEEEEeeccEEEecCCeEEEecEEEEecCCC-CC---CCCchHHHHHHHHHHHHH---------------HhcCCe
Q 017664           81 KIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHV-ES---VPKSRTERLSQYEKDFEK---------------VKSANS  141 (368)
Q Consensus        81 ~~~~~~~~~~~~~~v~~~~g~~~~~d~lvlAtG~~-~~---~p~~~~~~~~~~~~~~~~---------------~~~~~~  141 (368)
                      +|+...-  +..+ +. .|...-++|.+|+|+|+. |+   +|+-+..+++-...+++.               -.++|+
T Consensus      1851 ~f~tn~e--igk~-vs-~d~l~~~~daiv~a~gst~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkk 1926 (2142)
T KOG0399|consen 1851 RFVTNTE--IGKH-VS-LDELKKENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKK 1926 (2142)
T ss_pred             eEEeecc--cccc-cc-HHHHhhccCeEEEEeCCCCCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCe
Confidence            5543321  2111 22 244456799999999998 43   455333333322222111               124799


Q ss_pred             EEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc---------ccccCchh-----HHHHHHHH---------------
Q 017664          142 VLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL---------LEFVGSRA-----SQIALDWL---------------  192 (368)
Q Consensus       142 v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~---------l~~~~~~~-----~~~~~~~l---------------  192 (368)
                      |+|||||.+|-++...-.+ ...+.|.-++--+..         .|.++.-+     ..+.+++.               
T Consensus      1927 vivigggdtg~dcigtsvr-hg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~~g~dpr~y~vltk~f~ 2005 (2142)
T KOG0399|consen 1927 VIVIGGGDTGTDCIGTSVR-HGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEHYGSDPRTYSVLTKRFI 2005 (2142)
T ss_pred             EEEECCCCccccccccchh-hccceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHHHhCCCcceeeeeeeeee
Confidence            9999999999998876543 334455444422211         11111100     01111111               


Q ss_pred             HcCCcEEEecceeeeccc---CCC--eE-EcC-CCcEEecCEEEEccCCC-CCchhhhccccccccCCCCcEEeC-CCee
Q 017664          193 TSKKVEVILNQSVTLNTI---SDG--LI-ETS-SGETIDTDCHFMCTGKA-MASSWLRETILKDSLDGRGRLMVD-ENLR  263 (368)
Q Consensus       193 ~~~gv~i~~~~~v~~i~~---~~~--~v-~~~-~g~~i~~d~vi~a~G~~-p~~~~~~~~~l~~~~~~~g~i~vd-~~~~  263 (368)
                      .+.+-. .++-+..+++.   +.+  .+ +.. +.+.++||++|+|.|+. |......+  +++..|+++.|..- +.+.
T Consensus      2006 ~~~~g~-v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~--~~~~~d~rsni~t~~~~y~ 2082 (2142)
T KOG0399|consen 2006 GDDNGN-VTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQ--LNLKTDPRSNILTPKDSYS 2082 (2142)
T ss_pred             ccCCCc-eeeEEEEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhh--cCcccCccccccCCCcccc
Confidence            010100 11111222221   122  22 222 23589999999999998 43444444  44477888776554 4466


Q ss_pred             ecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCC
Q 017664          264 VRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGR  306 (368)
Q Consensus       264 ~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~  306 (368)
                      + +.+.+||+|||....+  +..+|+++||.+|+.+-..+.|.
T Consensus      2083 t-~v~~vfaagdcrrgqs--lvvwai~egrq~a~~vd~~~~~~ 2122 (2142)
T KOG0399|consen 2083 T-DVAKVFAAGDCRRGQS--LVVWAIQEGRQAARQVDELMGGT 2122 (2142)
T ss_pred             c-cccceeecccccCCce--EEEEEehhhhHHHHHHHHHhCCc
Confidence            6 7999999999998766  67899999999999998755443

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.78  E-value=9.3e-21  Score=161.22  Aligned_cols=170  Identities=26%  Similarity=0.391  Sum_probs=106.1

Q ss_pred             cEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccc-c-cccee-----ecc-cc-cCceeE-EEeE
Q 017664           18 KVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSF-A-VRSVI-----NHG-DY-LSNVKI-VVST   86 (368)
Q Consensus        18 ~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~-~-~~~~~-----~~~-~~-~~~~~~-~~~~   86 (368)
                      ||+||||||||++||.+|+ .+.+++|+|+.+...+....+........ . .....     ... .+ ..++++ +...
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   80 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK   80 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence            7999999999999999998 59999999998864432221111100000 0 00000     111 00 124555 3445


Q ss_pred             EEEeecc--E-------E---EecCCeEEEecEEEEecCCCCCCCCchH-------HHHHHHHHHHHHHhcCCeEEEEcC
Q 017664           87 AVSITDT--E-------V---VTAGGQTFVYDYVVVATGHVESVPKSRT-------ERLSQYEKDFEKVKSANSVLIVGG  147 (368)
Q Consensus        87 ~~~~~~~--~-------v---~~~~g~~~~~d~lvlAtG~~~~~p~~~~-------~~~~~~~~~~~~~~~~~~v~VvG~  147 (368)
                      +..++..  .       +   ...++..+.||+||+|||+.|..|+++.       ..+.++..........++++||| 
T Consensus        81 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG-  159 (201)
T PF07992_consen   81 VVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVG-  159 (201)
T ss_dssp             EEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEES-
T ss_pred             cccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCccccccccccccccccccccccccccccc-
Confidence            5555432  2       1   2345678999999999999855444332       23445555555555566899998 


Q ss_pred             chhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCCcEEecCE
Q 017664          148 GPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDC  227 (368)
Q Consensus       148 g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~  227 (368)
                                                                                                      
T Consensus       160 --------------------------------------------------------------------------------  159 (201)
T PF07992_consen  160 --------------------------------------------------------------------------------  159 (201)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCC
Q 017664          228 HFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIP  280 (368)
Q Consensus       228 vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~  280 (368)
                                .+++. ...+++++++|++.||+++|+ +.||||++|||++.+
T Consensus       160 ----------~~~l~-~~~~~~~~~~g~i~vd~~~~t-~~~~Iya~GD~a~~~  200 (201)
T PF07992_consen  160 ----------TEFLA-EKLGVELDENGFIKVDENLQT-SVPGIYAAGDCAGIY  200 (201)
T ss_dssp             ----------TTTST-HHTTSTBTTTSSBEEBTTSBB-SSTTEEE-GGGBEES
T ss_pred             ----------ccccc-ccccccccccccccccccccc-ccccccccccccccC
Confidence                      34442 223336788999999999999 799999999999653

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=99.78  E-value=1.3e-18  Score=145.01  Aligned_cols=252  Identities=19%  Similarity=0.274  Sum_probs=155.6

Q ss_pred             cEEEECCChHHHHHHHHhh---cCCcEEEEcCCCceee--eccceeeeecccccccceeecccccCc-eeEEEeEEEEee
Q 017664           18 KVVVIGGGVGGSLLAYHIQ---SFADVVLIDEKEYFEI--TWASLRAVVEPSFAVRSVINHGDYLSN-VKIVVSTAVSIT   91 (368)
Q Consensus        18 ~vvIIGaG~aGl~aA~~L~---~g~~v~lie~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   91 (368)
                      +.+|||||.||.+||..|+   +..+|+|+...+..--  ++..+..+. ..|..+.. ...++... -+++++ +..++
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~yl-ekfdv~eq-~~~elg~~f~~~~~~-v~~~~   77 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYL-EKFDVKEQ-NCHELGPDFRRFLND-VVTWD   77 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHH-HhcCcccc-chhhhcccHHHHHHh-hhhhc
Confidence            3689999999999999876   5889999988764210  000000000 01110000 00001000 023344 55555


Q ss_pred             c--cEEEecCCeEEEecEEEEecCCCCCCCCc--h-----HHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhC
Q 017664           92 D--TEVVTAGGQTFVYDYVVVATGHVESVPKS--R-----TERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDF  162 (368)
Q Consensus        92 ~--~~v~~~~g~~~~~d~lvlAtG~~~~~p~~--~-----~~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~  162 (368)
                      .  +.+++.+|..+.|++|++|+|.+|..--.  +     .+...+.......+.+.|.|+++|.|-+++|++.++.   
T Consensus        78 s~ehci~t~~g~~~ky~kKOG~tg~kPklq~E~~n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk---  154 (334)
T KOG2755|consen   78 SSEHCIHTQNGEKLKYFKLCLCTGYKPKLQVEGINPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELK---  154 (334)
T ss_pred             cccceEEecCCceeeEEEEEEecCCCcceeecCCCceEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhh---
Confidence            3  47899999999999999999999854321  1     1223334444456778999999999999999999986   


Q ss_pred             CCCeEEEEecCccccc-ccCchhHHHHHHHHHcC-----------------------------CcEEEecceeeec----
Q 017664          163 PDKKVILVHRGPKLLE-FVGSRASQIALDWLTSK-----------------------------KVEVILNQSVTLN----  208 (368)
Q Consensus       163 ~~~~v~~i~~~~~~l~-~~~~~~~~~~~~~l~~~-----------------------------gv~i~~~~~v~~i----  208 (368)
                       ..+|+|....+.+.. +++|.....+...++..                             |=+++..-....+    
T Consensus       155 -~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~ese  233 (334)
T KOG2755|consen  155 -ILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISESE  233 (334)
T ss_pred             -cceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCcccccCcchhhhcccccchhhh
Confidence             678888887766554 45555555443333110                             1111110000000    


Q ss_pred             ---------------ccCCC-eEEcC---CC--cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCC
Q 017664          209 ---------------TISDG-LIETS---SG--ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGF  267 (368)
Q Consensus       209 ---------------~~~~~-~v~~~---~g--~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~  267 (368)
                                     ..++. .+.-.   ++  ..+.+|.+++++|..||.++.-...+  ...++|.+.||+.|++ +.
T Consensus       234 er~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~~l--q~~edggikvdd~m~t-sl  310 (334)
T KOG2755|consen  234 NRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNKML--QITEDGGIKVDDAMET-SL  310 (334)
T ss_pred             hhhhHHhhhheeeeccchhhcccccccccccccceeeeeEEEeccccCcCceEEecChh--hhccccCeeehhhccc-cc
Confidence                           01111 11111   11  25789999999999999987665555  5677899999999999 89


Q ss_pred             CCeEEecccCCC
Q 017664          268 KNVFAIGDITDI  279 (368)
Q Consensus       268 ~~ifa~GD~~~~  279 (368)
                      |++||+||.+..
T Consensus       311 pdvFa~gDvctt  322 (334)
T KOG2755|consen  311 PDVFAAGDVCTT  322 (334)
T ss_pred             cceeeecceecc
Confidence            999999998764

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=99.76  E-value=2.6e-18  Score=156.46  Aligned_cols=220  Identities=21%  Similarity=0.273  Sum_probs=116.4

Q ss_pred             CCcEEEECCChHHHHHHHHhhc--CCcEEEEcCCCceeeeccceee-----------ee---ccc--cc-----------
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS--FADVVLIDEKEYFEITWASLRA-----------VV---EPS--FA-----------   66 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~--g~~v~lie~~~~~~~~~~~~~~-----------~~---~~~--~~-----------   66 (368)
                      .+|+|+||.||++|+.|..|..  ..++..+|+.+.+.+..+.+..           .+   .+.  +.           
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl   81 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL   81 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence            5799999999999999999983  6999999999877544332211           00   000  00           


Q ss_pred             ----------------ccceeecccccCceeEEEeEEEEeecc--------EEEec----CCeEEEecEEEEecCCCCCC
Q 017664           67 ----------------VRSVINHGDYLSNVKIVVSTAVSITDT--------EVVTA----GGQTFVYDYVVVATGHVESV  118 (368)
Q Consensus        67 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~v~~~----~g~~~~~d~lvlAtG~~~~~  118 (368)
                                      .++..+..+.+...-.+..+|..+++.        .|.+.    ++..+.++.||+|+|..|.+
T Consensus        82 ~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~i  161 (341)
T PF13434_consen   82 YEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRI  161 (341)
T ss_dssp             HHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE--
T ss_pred             hhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCC
Confidence                            000111111222312234455555421        45552    45789999999999999999


Q ss_pred             CCchH-----HHH-HHH--HHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------cC
Q 017664          119 PKSRT-----ERL-SQY--EKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF---------VG  181 (368)
Q Consensus       119 p~~~~-----~~~-~~~--~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~---------~~  181 (368)
                      |..-.     ..+ +..  ....+.....++|+|||||.||.|++..|.++.+..+|+++.|++.+.+.         +.
T Consensus       162 P~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~  241 (341)
T PF13434_consen  162 PEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFS  241 (341)
T ss_dssp             -GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGS
T ss_pred             CcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcC
Confidence            87432     111 222  22222255689999999999999999999987666899999999765332         12


Q ss_pred             chhH-------------------------------HHHH-----HHH-HcCCcEEEecceeeecccCC-C--eEEcCC--
Q 017664          182 SRAS-------------------------------QIAL-----DWL-TSKKVEVILNQSVTLNTISD-G--LIETSS--  219 (368)
Q Consensus       182 ~~~~-------------------------------~~~~-----~~l-~~~gv~i~~~~~v~~i~~~~-~--~v~~~~--  219 (368)
                      |+..                               +.+.     +.+ .+..+.++.++.|+.++..+ +  .+.+.+  
T Consensus       242 P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~  321 (341)
T PF13434_consen  242 PEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQ  321 (341)
T ss_dssp             HHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETT
T ss_pred             chhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECC
Confidence            2211                               1111     112 34468899999999987765 3  444433  


Q ss_pred             ---CcEEecCEEEEccCCC
Q 017664          220 ---GETIDTDCHFMCTGKA  235 (368)
Q Consensus       220 ---g~~i~~d~vi~a~G~~  235 (368)
                         .+++++|.||+|||++
T Consensus       322 ~~~~~~~~~D~VilATGy~  340 (341)
T PF13434_consen  322 TGEEETLEVDAVILATGYR  340 (341)
T ss_dssp             T--EEEEEESEEEE---EE
T ss_pred             CCCeEEEecCEEEEcCCcc
Confidence               2478999999999985

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.71  E-value=7e-16  Score=145.66  Aligned_cols=163  Identities=25%  Similarity=0.384  Sum_probs=106.6

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHhhc-CCc-EEEEcCCCceeeeccceee-----eec------ccccc---cceeec--
Q 017664           12 GLVEKKKVVVIGGGVGGSLLAYHIQS-FAD-VVLIDEKEYFEITWASLRA-----VVE------PSFAV---RSVINH--   73 (368)
Q Consensus        12 ~~~~~~~vvIIGaG~aGl~aA~~L~~-g~~-v~lie~~~~~~~~~~~~~~-----~~~------~~~~~---~~~~~~--   73 (368)
                      .+++.+||+|||||++||++|++|++ |.+ ++|+||++..|..|...+.     ...      +.++.   ..+...  
T Consensus         4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~   83 (443)
T COG2072           4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAE   83 (443)
T ss_pred             CcCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCccc
Confidence            45678999999999999999999984 777 9999999988866533111     000      00000   000000  


Q ss_pred             -cc-------ccC---ceeEEE-eEEEEeecc----EEEecCCeE--EEecEEEEecCCC--CCCCCch------HHHHH
Q 017664           74 -GD-------YLS---NVKIVV-STAVSITDT----EVVTAGGQT--FVYDYVVVATGHV--ESVPKSR------TERLS  127 (368)
Q Consensus        74 -~~-------~~~---~~~~~~-~~~~~~~~~----~v~~~~g~~--~~~d~lvlAtG~~--~~~p~~~------~~~~~  127 (368)
                       .+       .+.   .+.+.. .++...+.+    +|.++++..  +.+|.||+|||..  |.+|.+.      ...++
T Consensus        84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~H  163 (443)
T COG2072          84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRILH  163 (443)
T ss_pred             HHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCCceEEc
Confidence             01       111   112211 122333322    677777765  4599999999987  6777653      23344


Q ss_pred             HHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664          128 QYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL  176 (368)
Q Consensus       128 ~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~  176 (368)
                      +.+........+|+|+|||+|.||++++.+|.+  .+.+|+++.|++..
T Consensus       164 S~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~--~ga~vt~~qRs~~~  210 (443)
T COG2072         164 SADWPNPEDLRGKRVLVIGAGASAVDIAPELAE--VGASVTLSQRSPPH  210 (443)
T ss_pred             hhcCCCccccCCCeEEEECCCccHHHHHHHHHh--cCCeeEEEecCCCc
Confidence            444444455679999999999999999999996  35999999998643

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=99.68  E-value=4.2e-15  Score=134.37  Aligned_cols=195  Identities=18%  Similarity=0.162  Sum_probs=123.9

Q ss_pred             EEEecEEEEecCCCCCCCCch-------HHHHHHHHHHHHHH----------------hcCCeEEE---EcCch------
Q 017664          102 TFVYDYVVVATGHVESVPKSR-------TERLSQYEKDFEKV----------------KSANSVLI---VGGGP------  149 (368)
Q Consensus       102 ~~~~d~lvlAtG~~~~~p~~~-------~~~~~~~~~~~~~~----------------~~~~~v~V---vG~g~------  149 (368)
                      +++...+|+|||..+.-+.-.       .+++.+...+.+.+                ..+|+|+.   +|+-.      
T Consensus       298 e~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~lElErml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~~n~  377 (622)
T COG1148         298 ELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITNLELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQVGNP  377 (622)
T ss_pred             EEEeceEEEEccccccCcchhhhcCCCCCcchhhHHHHHHHhccCCCCCceEEecCCCCCCceEEEEEEecCcCcccCCh
Confidence            567889999999985433211       12222222221111                23567655   56544      


Q ss_pred             --------hHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcC
Q 017664          150 --------TGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETS  218 (368)
Q Consensus       150 --------~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~  218 (368)
                              .++.-|..+.+++|..+|++++-.-+..   ....-+.+.+.-++.||+++.+. +.+|...++   .|+.+
T Consensus       378 YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiRaf---G~~yEefY~~~Q~~~gV~fIRGr-vaei~e~p~~~l~V~~E  453 (622)
T COG1148         378 YCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRAF---GKDYEEFYVRSQEDYGVRFIRGR-VAEIAEFPKKKLIVRVE  453 (622)
T ss_pred             hhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEeecc---CccHHHHHHhhhhhhchhhhcCC-hHHheeCCCCeeEEEEE
Confidence                    3456777888888999999987655532   22333344444458899998764 444544333   33333


Q ss_pred             C---C--cEEecCEEEEccCCCCCc---hhhhccccccccCCCCcEEeC-CCeee--cCCCCeEEecccCCCCccchHHH
Q 017664          219 S---G--ETIDTDCHFMCTGKAMAS---SWLRETILKDSLDGRGRLMVD-ENLRV--RGFKNVFAIGDITDIPEIKQGYL  287 (368)
Q Consensus       219 ~---g--~~i~~d~vi~a~G~~p~~---~~~~~~~l~~~~~~~g~i~vd-~~~~~--~~~~~ifa~GD~~~~~~~~~~~~  287 (368)
                      |   |  .++++|+|++++|+.|..   ....  .|++..+++||+... +.++.  ++.++||.+|-|.+   |+....
T Consensus       454 dTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~--iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqg---PkdI~~  528 (622)
T COG1148         454 DTLTGEVKEIEADLVVLATGMEPSEGAKKIAK--ILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQG---PKDIAD  528 (622)
T ss_pred             eccCccceecccceEEEeeccccCcchHHHHH--hcCcccCCCCccccCCCCcccccccCCcEEEeecccC---CccHHH
Confidence            2   3  479999999999998743   2222  244578889998765 44443  15789999998875   457888


Q ss_pred             HHHHHHHHHHHHHHHHcC
Q 017664          288 AQKHALVTAKNLKKLMMG  305 (368)
Q Consensus       288 a~~~g~~aa~~i~~~l~g  305 (368)
                      ++.||..||......+..
T Consensus       529 siaqa~aAA~kA~~~l~~  546 (622)
T COG1148         529 SIAQAKAAAAKAAQLLGR  546 (622)
T ss_pred             HHHHhHHHHHHHHHHhhc
Confidence            999999888888776643

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.68  E-value=3.5e-17  Score=139.42  Aligned_cols=154  Identities=29%  Similarity=0.413  Sum_probs=85.2

Q ss_pred             EEECCChHHHHHHHHhh-cCCc-EEEEcCCCceeeeccceee---eeccc-----c--c------cc---------ceee
Q 017664           20 VVIGGGVGGSLLAYHIQ-SFAD-VVLIDEKEYFEITWASLRA---VVEPS-----F--A------VR---------SVIN   72 (368)
Q Consensus        20 vIIGaG~aGl~aA~~L~-~g~~-v~lie~~~~~~~~~~~~~~---~~~~~-----~--~------~~---------~~~~   72 (368)
                      +||||||+||++|.+|. +|.+ ++|+|+++..|..|.....   ...+.     +  .      ..         ....
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS   80 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence            79999999999999997 5888 9999999888766643110   00000     0  0      00         0000


Q ss_pred             cc---cccC------ceeEE-EeEEEEeecc----EEEecCCeEEEecEEEEecCC--CCCCCCchH----HHHHHHHHH
Q 017664           73 HG---DYLS------NVKIV-VSTAVSITDT----EVVTAGGQTFVYDYVVVATGH--VESVPKSRT----ERLSQYEKD  132 (368)
Q Consensus        73 ~~---~~~~------~~~~~-~~~~~~~~~~----~v~~~~g~~~~~d~lvlAtG~--~~~~p~~~~----~~~~~~~~~  132 (368)
                      ..   +|+.      +.++. +.++..+...    .+.+.+++.+.+|+||+|||.  .|..|.++.    ..++.....
T Consensus        81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g~~~~~~~h~~~~~  160 (203)
T PF13738_consen   81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPGSAFRPIIHSADWR  160 (203)
T ss_dssp             HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TTGGCSEEEEGGG-S
T ss_pred             HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCccccccccccceEehhhcC
Confidence            00   0110      23332 2345555422    788888888999999999997  476666544    112221111


Q ss_pred             HHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 017664          133 FEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK  175 (368)
Q Consensus       133 ~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~  175 (368)
                      ......+++|+|||+|.||+|++..|.+  .+.+|+++.|++.
T Consensus       161 ~~~~~~~k~V~VVG~G~SA~d~a~~l~~--~g~~V~~~~R~~~  201 (203)
T PF13738_consen  161 DPEDFKGKRVVVVGGGNSAVDIAYALAK--AGKSVTLVTRSPI  201 (203)
T ss_dssp             TTGGCTTSEEEEE--SHHHHHHHHHHTT--TCSEEEEEESS--
T ss_pred             ChhhcCCCcEEEEcChHHHHHHHHHHHh--hCCEEEEEecCCC
Confidence            1223457999999999999999999996  4699999999864

...

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.68  E-value=2.2e-16  Score=147.05  Aligned_cols=219  Identities=22%  Similarity=0.298  Sum_probs=130.8

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccce----------eee------------eccccccc-
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASL----------RAV------------VEPSFAVR-   68 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~----------~~~------------~~~~~~~~-   68 (368)
                      ++..++++|||||||||++|+.|. .|++++++||.+.+|+.|.-.          ...            .+-.+..+ 
T Consensus         3 ~~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~   82 (448)
T KOG1399|consen    3 MMMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERD   82 (448)
T ss_pred             cCCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccC
Confidence            455789999999999999999997 599999999999999877433          110            01011111 


Q ss_pred             -ceeecc----c----ccCc------eeEE--EeEEEEee--ccEEEecCC----eEEEecEEEEecCCC--CCCCCchH
Q 017664           69 -SVINHG----D----YLSN------VKIV--VSTAVSIT--DTEVVTAGG----QTFVYDYVVVATGHV--ESVPKSRT  123 (368)
Q Consensus        69 -~~~~~~----~----~~~~------~~~~--~~~~~~~~--~~~v~~~~g----~~~~~d~lvlAtG~~--~~~p~~~~  123 (368)
                       .+.+..    +    |.+.      +++.  ..++...+  ...|...+.    +..-||.|++|||..  |.+|.++.
T Consensus        83 ~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g  162 (448)
T KOG1399|consen   83 PRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPG  162 (448)
T ss_pred             cccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCC
Confidence             000000    0    1111      1221  11233333  225554433    467899999999998  77776543


Q ss_pred             --------HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcC
Q 017664          124 --------ERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSK  195 (368)
Q Consensus       124 --------~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~  195 (368)
                              ..+++..........+|+|+|||.|+||+|++.+++.  ...+|++..+.... ...       ....+ ..
T Consensus       163 ~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~--~ak~v~~~~~~~~~-~~~-------~~~~~-~~  231 (448)
T KOG1399|consen  163 PGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLR--VAKEVHLSVVSPKV-HVE-------PPEIL-GE  231 (448)
T ss_pred             CchhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHH--hccCcceeeecccc-ccc-------cccee-ec
Confidence                    2344444444455678999999999999999999885  35566665431000 000       00000 11


Q ss_pred             CcEEEecceeeecccCCCeEEcCCCcEEecCEEEEccCCCCCchhhhccc
Q 017664          196 KVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETI  245 (368)
Q Consensus       196 gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~  245 (368)
                      ++..+..  +.... +++.+.+.++....+|.+|+|||+.-..+++....
T Consensus       232 ~~~~~~~--i~~~~-e~~~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~~  278 (448)
T KOG1399|consen  232 NLWQVPS--IKSFT-EDGSVFEKGGPVERVDRIIFCTGYKYKFPFLETLG  278 (448)
T ss_pred             ceEEccc--ccccc-CcceEEEcCceeEEeeeEEEeeeeEeecceeccCC
Confidence            2222222  33222 22246667777889999999999997777766544

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=99.58  E-value=4.1e-14  Score=124.44  Aligned_cols=279  Identities=19%  Similarity=0.152  Sum_probs=154.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhc---CCcEEEEcCCCceeeeccceeeeecccccccce--eecccccCceeEEEeEEE
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYFEITWASLRAVVEPSFAVRSV--INHGDYLSNVKIVVSTAV   88 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~   88 (368)
                      ...++|+|||+||||+.+|..|-+   +.+|+|+|+.+...   +..+..+.|+.++-..  ..+.+....-++-  ..-
T Consensus        18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF---GLvRyGVAPDHpEvKnvintFt~~aE~~rfs--f~g   92 (468)
T KOG1800|consen   18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF---GLVRYGVAPDHPEVKNVINTFTKTAEHERFS--FFG   92 (468)
T ss_pred             cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc---ceeeeccCCCCcchhhHHHHHHHHhhccceE--EEe
Confidence            345699999999999999987742   78999999988532   4455555665543220  0111111111111  111


Q ss_pred             Eeecc-EEEecCCeEEEecEEEEecCCC----CCCCCchHHHHHHHHHHHHHH------------hcCCeEEEEcCchhH
Q 017664           89 SITDT-EVVTAGGQTFVYDYVVVATGHV----ESVPKSRTERLSQYEKDFEKV------------KSANSVLIVGGGPTG  151 (368)
Q Consensus        89 ~~~~~-~v~~~~g~~~~~d~lvlAtG~~----~~~p~~~~~~~~~~~~~~~~~------------~~~~~v~VvG~g~~~  151 (368)
                      ++.-. .+.+ ...+-.||.+|||.|+.    ..+|+.+...+.+...+....            ....+++|||.|+.+
T Consensus        93 Nv~vG~dvsl-~eL~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVA  171 (468)
T KOG1800|consen   93 NVKVGRDVSL-KELTDNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVA  171 (468)
T ss_pred             cceecccccH-HHHhhcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCcccccCcccccceEEEEccCchh
Confidence            11111 1122 12245699999999998    467776544444444332211            126899999999999


Q ss_pred             HHHHHHHhhh--------------------CCCCeEEEEecCccc--------------cc-------------------
Q 017664          152 VELAGEIAVD--------------------FPDKKVILVHRGPKL--------------LE-------------------  178 (368)
Q Consensus       152 ~e~a~~l~~~--------------------~~~~~v~~i~~~~~~--------------l~-------------------  178 (368)
                      +++|..|...                    ..-++|+++-|+..+              ++                   
T Consensus       172 lDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~~~l~~~~~r~~~~~~~~~~~~~~  251 (468)
T KOG1800|consen  172 LDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREVLELPGARPRLDPVDFSGKWMDES  251 (468)
T ss_pred             hhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHHHHHhCCCCcccccCchhccceeCCcc
Confidence            9999887631                    112568888776421              00                   


Q ss_pred             -----ccCchhHHHHHHHHHcCC---------cE---EEecceeeecccC-CC---------------eEEcCCCcEEec
Q 017664          179 -----FVGSRASQIALDWLTSKK---------VE---VILNQSVTLNTIS-DG---------------LIETSSGETIDT  225 (368)
Q Consensus       179 -----~~~~~~~~~~~~~l~~~g---------v~---i~~~~~v~~i~~~-~~---------------~v~~~~g~~i~~  225 (368)
                           .--+++.+.+.+.++++-         .+   +.....+..|..+ ++               .+.+.+-++++|
T Consensus       252 ~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~~~~~~v~~~~~~~t~l~~~~~~~tg~~e~~p~  331 (468)
T KOG1800|consen  252 ETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAILPGADGVSGVRFQVTILEGTQAVPTGAFETLPC  331 (468)
T ss_pred             cccccCchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhccCcccccceEEEeeeehhhcccccCceEeecc
Confidence                 001223333444444311         10   0111111222222 11               011222358999


Q ss_pred             CEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeec---CCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHH
Q 017664          226 DCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVR---GFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKL  302 (368)
Q Consensus       226 d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~---~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~  302 (368)
                      ++++.+.|++.. ++..  ++  ..|.+..+.-+...+..   -.|++|+.|-|...|.- .+..+++++..+|+.|.+.
T Consensus       332 ~l~i~sIGYks~-pv~~--gi--pFd~~kgvv~n~~GrV~~s~~~pglY~sGW~k~GP~G-vIattm~dAf~v~d~I~qD  405 (468)
T KOG1800|consen  332 GLLIRSIGYKSV-PVDS--GI--PFDDKKGVVPNVNGRVLVSGCSPGLYASGWVKHGPTG-VIATTMQDAFEVADTIVQD  405 (468)
T ss_pred             ceeEeeeeeccc-ccCC--CC--CcccccCcccCCCceEEeeccCCceEEEeeeccCCcc-eeeehhhhHHHHHHHHHHH
Confidence            999999999832 1211  22  23333222222222221   26999999999987542 4567889999999999987


Q ss_pred             Hc
Q 017664          303 MM  304 (368)
Q Consensus       303 l~  304 (368)
                      +.
T Consensus       406 ~~  407 (468)
T KOG1800|consen  406 LK  407 (468)
T ss_pred             HH
Confidence            75

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=99.57  E-value=3e-13  Score=126.16  Aligned_cols=159  Identities=14%  Similarity=0.091  Sum_probs=111.3

Q ss_pred             EEEEcCchhHHHHH-HHHhh--hCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC---eE
Q 017664          142 VLIVGGGPTGVELA-GEIAV--DFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG---LI  215 (368)
Q Consensus       142 v~VvG~g~~~~e~a-~~l~~--~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v  215 (368)
                      =.|++.+.+|+|.+ ..+.+  ...+.+|+++...+..++..  ++.+.+.+.+++.|++++++++|.+++.+++   .+
T Consensus       218 ~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~--rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v  295 (422)
T PRK05329        218 EAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGL--RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAV  295 (422)
T ss_pred             CEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchH--HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEE
Confidence            36788899999998 44431  23689999998888877664  6888899999999999999999999876655   23


Q ss_pred             EcCCC--cEEecCEEEEccCCCCCchhh------hcccccccc--C-----------------CCCcEEeCCCeee----
Q 017664          216 ETSSG--ETIDTDCHFMCTGKAMASSWL------RETILKDSL--D-----------------GRGRLMVDENLRV----  264 (368)
Q Consensus       216 ~~~~g--~~i~~d~vi~a~G~~p~~~~~------~~~~l~~~~--~-----------------~~g~i~vd~~~~~----  264 (368)
                      ...+|  ..+++|.+|+|+|..+...+.      .+.-+++.+  .                 ..=.+.+|+.|+.    
T Consensus       296 ~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p~~~~  375 (422)
T PRK05329        296 WTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRPLDSQ  375 (422)
T ss_pred             EeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCcccCC
Confidence            34444  368999999999987554331      111111111  0                 0112667776665    


Q ss_pred             --cCCCCeEEecccCCCCccc---h-HHHHHHHHHHHHHHHHHH
Q 017664          265 --RGFKNVFAIGDITDIPEIK---Q-GYLAQKHALVTAKNLKKL  302 (368)
Q Consensus       265 --~~~~~ifa~GD~~~~~~~~---~-~~~a~~~g~~aa~~i~~~  302 (368)
                        +..+|+||+|++.+.+.+.   . .-.|...|..||++|.+.
T Consensus       376 g~~~~~nl~a~G~vl~g~d~~~~~~g~Gva~~ta~~a~~~~~~~  419 (422)
T PRK05329        376 GGPVIENLYAAGAVLGGYDPIREGCGSGVALATALHAAEQIAEE  419 (422)
T ss_pred             CCeeccceEEeeehhcCCchHHhCCCchhHHHHHHHHHHHHHHh
Confidence              2479999999999887641   1 136888899999998754

>PTZ00188 adrenodoxin reductase; Provisional

Probab=99.57  E-value=8.9e-14  Score=129.70  Aligned_cols=273  Identities=15%  Similarity=0.137  Sum_probs=147.4

Q ss_pred             CCCcEEEECCChHHHHHHHHhh--cCCcEEEEcCCCceeeeccceeeeeccccccc-ce-eeccccc--CceeEEEeEEE
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ--SFADVVLIDEKEYFEITWASLRAVVEPSFAVR-SV-INHGDYL--SNVKIVVSTAV   88 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~--~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~--~~~~~~~~~~~   88 (368)
                      ..++|+|||||||||+||.+|.  .|++|+|+|+.+..+   +.++..+.++.... .. ..+...+  .++++.-  .+
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg---GLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~g--nv  112 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY---GLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFG--NV  112 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc---cEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEe--ee
Confidence            4678999999999999999764  499999999999876   33444444432211 11 1111111  2344442  11


Q ss_pred             EeeccEEEecCCeEEEecEEEEecCCCC-CCC------------Cch----HHHHHHHHH----------------H---
Q 017664           89 SITDTEVVTAGGQTFVYDYVVVATGHVE-SVP------------KSR----TERLSQYEK----------------D---  132 (368)
Q Consensus        89 ~~~~~~v~~~~g~~~~~d~lvlAtG~~~-~~p------------~~~----~~~~~~~~~----------------~---  132 (368)
                      .+.. .+..++- ...||.||+|+|+.+ .+|            +.+    ..+..+...                .   
T Consensus       113 ~VG~-Dvt~eeL-~~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~~~ay  190 (506)
T PTZ00188        113 HVGV-DLKMEEL-RNHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIFHARDLIYFYNNMYNDVRCKAVDNY  190 (506)
T ss_pred             EecC-ccCHHHH-HhcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEEehheEEEeecCCCCcccccccccc
Confidence            1211 1222122 237999999999984 344            221    011111100                0   


Q ss_pred             HHHHhcCCeEEEEcCchhHHHHHHHHhh-------------------hCCCCeEEEEecCccc--------------ccc
Q 017664          133 FEKVKSANSVLIVGGGPTGVELAGEIAV-------------------DFPDKKVILVHRGPKL--------------LEF  179 (368)
Q Consensus       133 ~~~~~~~~~v~VvG~g~~~~e~a~~l~~-------------------~~~~~~v~~i~~~~~~--------------l~~  179 (368)
                      +..+...++++|||+|+.++++|..|..                   +..-.+|+++-|+...              ++.
T Consensus       191 L~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp~qaaFT~kElrEL~~l~~  270 (506)
T PTZ00188        191 LNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQSSFTNAELRELISLEN  270 (506)
T ss_pred             ccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecCHHHhCCCHHHHHHHhcCCC
Confidence            0001145789999999999999997542                   1223468888776311              010


Q ss_pred             ---------c------Cc--h-----------hHHHHHHHHH----------cCCcEEEecceeeecccCCC---eEEcC
Q 017664          180 ---------V------GS--R-----------ASQIALDWLT----------SKKVEVILNQSVTLNTISDG---LIETS  218 (368)
Q Consensus       180 ---------~------~~--~-----------~~~~~~~~l~----------~~gv~i~~~~~v~~i~~~~~---~v~~~  218 (368)
                               +      +.  .           ..+.+.+..+          .+.+.+++...+.+|...++   .+++.
T Consensus       271 ~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l~F~~sP~ei~~~~~~v~~v~~~  350 (506)
T PTZ00188        271 TKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFYFEIRQIRPIDGAMKNVELE  350 (506)
T ss_pred             CeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEEEEEccCCceEEECCCCcEeEEEEE
Confidence                     0      00  0           1112222221          13456677777777764222   22222


Q ss_pred             -----------CC--cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeee-cCCCCeEEecccCCCCccch
Q 017664          219 -----------SG--ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRV-RGFKNVFAIGDITDIPEIKQ  284 (368)
Q Consensus       219 -----------~g--~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~-~~~~~ifa~GD~~~~~~~~~  284 (368)
                                 .|  +++++|+|+-++|++..+ + .  ++  +.|.+  +.... .++ ...|++|++|-+...|.- .
T Consensus       351 ~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p-~-~--g~--pFd~~--~~n~~-grv~~~~~g~Y~~GWiKrGP~G-v  420 (506)
T PTZ00188        351 LNKNVPMSFSSFKENKVLVTPLVIFATGFKKSN-F-A--EN--LYNQS--VQMFK-EDIGQHKFAIFKAGWFDKGPKG-N  420 (506)
T ss_pred             EeecccCccCCCCeeEEEEcCEEEEcccccCCC-C-C--CC--Ccccc--CCCCC-CcccCCCCCcEEeeecCcCCCc-e
Confidence                       23  379999999999998532 1 1  22  33422  22111 111 026999999999987642 2


Q ss_pred             HHHHHHHHHHHHHHHHHHHc
Q 017664          285 GYLAQKHALVTAKNLKKLMM  304 (368)
Q Consensus       285 ~~~a~~~g~~aa~~i~~~l~  304 (368)
                      +.+-+..+..++..|.+.+.
T Consensus       421 Igtn~~da~~t~~~v~~d~~  440 (506)
T PTZ00188        421 IASQILNSKNSTHLVLNFLQ  440 (506)
T ss_pred             eccCcccHHHHHHHHHHHHh
Confidence            22334556667777776654

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.37  E-value=6.5e-12  Score=112.48  Aligned_cols=68  Identities=24%  Similarity=0.166  Sum_probs=55.7

Q ss_pred             CchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccC--CCCC-------chhhhcccccc
Q 017664          181 GSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTG--KAMA-------SSWLRETILKD  248 (368)
Q Consensus       181 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G--~~p~-------~~~~~~~~l~~  248 (368)
                      ...+.+.+.+.+++.||++++++.|.+++.++.  .+.+.+|+++.||.+|+|+|  .-|.       .+++++.++.+
T Consensus       110 A~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG~S~P~lGstg~gy~iA~~~G~~I  188 (408)
T COG2081         110 ASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGKSWPKLGSTGFGYPIARQFGHTI  188 (408)
T ss_pred             hHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCCcCCCCCCCCchhhHHHHHcCCcc
Confidence            346788899999999999999999999998875  88999998999999999999  4442       24666655543

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.36  E-value=3.9e-12  Score=90.84  Aligned_cols=78  Identities=31%  Similarity=0.436  Sum_probs=70.9

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcC
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETS  218 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~  218 (368)
                      +++|||+|++|+|+|..|.+  .+.+|+++++++.+++.+++.+...+.++++++||++++++.+.+++.+++  .|+++
T Consensus         1 ~vvViGgG~ig~E~A~~l~~--~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~   78 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAE--LGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLE   78 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHH--TTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHH--hCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEe
Confidence            68999999999999999985  589999999999999999999999999999999999999999999987765  36666


Q ss_pred             CC
Q 017664          219 SG  220 (368)
Q Consensus       219 ~g  220 (368)
                      ||
T Consensus        79 ~g   80 (80)
T PF00070_consen   79 DG   80 (80)
T ss_dssp             TS
T ss_pred             cC
Confidence            65

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.26  E-value=4.8e-10  Score=103.11  Aligned_cols=159  Identities=23%  Similarity=0.342  Sum_probs=97.6

Q ss_pred             CCcEEEECCChHHHHHHHHhhc----CCcEEEEcCCCceeee--cc--c------eee---eec-cccc-----------
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS----FADVVLIDEKEYFEIT--WA--S------LRA---VVE-PSFA-----------   66 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~----g~~v~lie~~~~~~~~--~~--~------~~~---~~~-~~~~-----------   66 (368)
                      +++|+|||+|++|+++|.+|.+    ...|.|+|+.+.+|..  +.  .      ++.   ... ++.+           
T Consensus         1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~   80 (474)
T COG4529           1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL   80 (474)
T ss_pred             CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence            4789999999999999998852    3349999999987521  10  0      000   000 1100           


Q ss_pred             ------------ccceeecc---ccc-----------C--ceeEEEeEEEEeecc------EEEecCCeEEEecEEEEec
Q 017664           67 ------------VRSVINHG---DYL-----------S--NVKIVVSTAVSITDT------EVVTAGGQTFVYDYVVVAT  112 (368)
Q Consensus        67 ------------~~~~~~~~---~~~-----------~--~~~~~~~~~~~~~~~------~v~~~~g~~~~~d~lvlAt  112 (368)
                                  ...+.++.   +|+           .  .+.+++..++.+.+.      .+...+|....+|-+|+||
T Consensus        81 ~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat  160 (474)
T COG4529          81 QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLAT  160 (474)
T ss_pred             cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence                        00000000   010           0  255666666655432      5667788889999999999


Q ss_pred             CCCCCCCCchHHHHH-------HHH--HHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          113 GHVESVPKSRTERLS-------QYE--KDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       113 G~~~~~p~~~~~~~~-------~~~--~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      |..+..++.-...+.       +..  .....+....+|+|+|+|.+.++....+..+....+|+++.|+.
T Consensus       161 gh~~~~~~~~~~~~~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG  231 (474)
T COG4529         161 GHSAPPADPAARDLKGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG  231 (474)
T ss_pred             cCCCCCcchhhhccCCCcceeccccCCcccccccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccc
Confidence            998544443111111       110  12233444667999999999999999999765667899999874

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.10  E-value=1.1e-09  Score=102.09  Aligned_cols=55  Identities=22%  Similarity=0.252  Sum_probs=39.1

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCCCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                      ..+.+.+.+.+++.||+++++++|..++.+++   .+.++++.++.+|.||+|+|-..
T Consensus       109 ~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S  166 (409)
T PF03486_consen  109 SSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKS  166 (409)
T ss_dssp             HHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SS
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCC
Confidence            35668888899999999999999999987655   57776778999999999999653

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.08  E-value=3.4e-09  Score=92.75  Aligned_cols=119  Identities=12%  Similarity=0.011  Sum_probs=71.7

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCCC-----eEEcC-----------CCcEEecCEEEEccCCCCC-chhhhccc
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISDG-----LIETS-----------SGETIDTDCHFMCTGKAMA-SSWLRETI  245 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-----~v~~~-----------~g~~i~~d~vi~a~G~~p~-~~~~~~~~  245 (368)
                      ++...+.+.+.+.|++++.++.+..+..+++     .+.+.           +..+++++.||.|||.... ..++....
T Consensus       101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~~  180 (254)
T TIGR00292       101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKKI  180 (254)
T ss_pred             HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHHc
Confidence            5667777788889999999999988765433     33332           2247999999999996533 33333321


Q ss_pred             -cccccC---CCCc--------EEeCCCeeecCCCCeEEecccCCC--Cccc---hHHHHHHHHHHHHHHHHHHH
Q 017664          246 -LKDSLD---GRGR--------LMVDENLRVRGFKNVFAIGDITDI--PEIK---QGYLAQKHALVTAKNLKKLM  303 (368)
Q Consensus       246 -l~~~~~---~~g~--------i~vd~~~~~~~~~~ifa~GD~~~~--~~~~---~~~~a~~~g~~aa~~i~~~l  303 (368)
                       +.....   ..+.        ..|+.+-+.  +|++|++|=.+..  +.|.   +--.-.-+|+.||+-|+..|
T Consensus       181 ~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~--~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~  253 (254)
T TIGR00292       181 VLEDQVPKLGGEKSMWAEVAEVAIHENTREV--VPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKL  253 (254)
T ss_pred             CcccCCcccCCchhhhhhhhHHHHHhccCcc--cCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHh
Confidence             211110   0011        122233333  8999999986542  1111   12234568999999998765

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.06  E-value=7.6e-09  Score=90.86  Aligned_cols=121  Identities=13%  Similarity=0.015  Sum_probs=73.6

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCCC----eEEcC-----------CCcEEecCEEEEccCCCCC-chhhhccc-
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISDG----LIETS-----------SGETIDTDCHFMCTGKAMA-SSWLRETI-  245 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~----~v~~~-----------~g~~i~~d~vi~a~G~~p~-~~~~~~~~-  245 (368)
                      .+...+.+.+++.|++++.++.+..+..+++    .+...           +..++.++.||.|+|.... ...+.... 
T Consensus       105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~~  184 (257)
T PRK04176        105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLARKGP  184 (257)
T ss_pred             HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHHHHcC
Confidence            5667777888889999999999988765433    22211           2247999999999996533 12221110 


Q ss_pred             -ccc------ccC--CCCcEEeCCCeeecCCCCeEEecccCCC--Cccc---hHHHHHHHHHHHHHHHHHHHcC
Q 017664          246 -LKD------SLD--GRGRLMVDENLRVRGFKNVFAIGDITDI--PEIK---QGYLAQKHALVTAKNLKKLMMG  305 (368)
Q Consensus       246 -l~~------~~~--~~g~i~vd~~~~~~~~~~ifa~GD~~~~--~~~~---~~~~a~~~g~~aa~~i~~~l~g  305 (368)
                       ...      +++  ......|+.+-+.  +|++|++|=.+..  +.|.   .--.-.-+|+.||+-|+..|..
T Consensus       185 ~~~~~~~g~~~~~~~~~e~~v~~~t~~~--~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~~  256 (257)
T PRK04176        185 ELGIEVPGEKSMWAERGEKLVVENTGEV--YPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLKK  256 (257)
T ss_pred             CcccccCCccccccCchHHHHHhcCCeE--cCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhhc
Confidence             000      111  1122344455555  8999999986543  1121   1223457899999999887753

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.96  E-value=2.7e-08  Score=92.13  Aligned_cols=143  Identities=17%  Similarity=0.175  Sum_probs=91.6

Q ss_pred             HHHHHHhhhCCCCeEEEEecCccccc-ccCchhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCC--cEEecC
Q 017664          153 ELAGEIAVDFPDKKVILVHRGPKLLE-FVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSG--ETIDTD  226 (368)
Q Consensus       153 e~a~~l~~~~~~~~v~~i~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g--~~i~~d  226 (368)
                      ++-..|.+ ..+..|.-+-.   +.| -....+.+.+.+.++++|++++.++.|.++..+++   .+.+.++  .++++|
T Consensus       237 ~~~~~L~~-~~g~~v~E~pt---lPPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD  312 (419)
T TIGR03378       237 ELLRELEQ-ATGLTLCELPT---MPPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRAD  312 (419)
T ss_pred             HHHHHHHH-HHCCCEEeCCC---CCCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECC
Confidence            34444544 24566654422   222 23456778889999999999999999998876666   3555665  479999


Q ss_pred             EEEEccCCCCCchhhhc------ccccccc----C---------------CCCcEEeCCCeeec----CCCCeEEecccC
Q 017664          227 CHFMCTGKAMASSWLRE------TILKDSL----D---------------GRGRLMVDENLRVR----GFKNVFAIGDIT  277 (368)
Q Consensus       227 ~vi~a~G~~p~~~~~~~------~~l~~~~----~---------------~~g~i~vd~~~~~~----~~~~ifa~GD~~  277 (368)
                      .+|+|+|..-...++++      .-+++.+    +               ..=.+.+|+.+|..    -.+|+|++|-+.
T Consensus       313 ~vVLAaGaw~S~gL~a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL  392 (419)
T TIGR03378       313 HFVLASGSFFSNGLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVL  392 (419)
T ss_pred             EEEEccCCCcCHHHHhhcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhh
Confidence            99999997722222222      1111111    0               01136789888841    278999999998


Q ss_pred             CCCccc---h-HHHHHHHHHHHHHHH
Q 017664          278 DIPEIK---Q-GYLAQKHALVTAKNL  299 (368)
Q Consensus       278 ~~~~~~---~-~~~a~~~g~~aa~~i  299 (368)
                      ++..+.   . .-.|+..|..||++|
T Consensus       393 ~G~d~~~~gcG~GVai~Ta~~aa~~i  418 (419)
T TIGR03378       393 GGYDPIFEGCGSGVAVSTALHAAEQI  418 (419)
T ss_pred             cCCChHhcCCCchhHHHHHHHHHHhh
Confidence            876541   1 136788888888876

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.91  E-value=1.7e-08  Score=93.37  Aligned_cols=63  Identities=24%  Similarity=0.156  Sum_probs=48.6

Q ss_pred             CchhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCCCCCchhhhccc
Q 017664          181 GSRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGKAMASSWLRETI  245 (368)
Q Consensus       181 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~  245 (368)
                      +..+.+.+.+.+++.|++++++++|+++..+++   .|++.+|+ +.+|.||+|+|... ..++...+
T Consensus       146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s-~~l~~~~~  211 (358)
T PF01266_consen  146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWS-PQLLPLLG  211 (358)
T ss_dssp             HHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGH-HHHHHTTT
T ss_pred             ccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccc-eeeeeccc
Confidence            447788888999999999999999999998777   38899997 99999999999763 33444443

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.91  E-value=1.5e-07  Score=91.09  Aligned_cols=45  Identities=20%  Similarity=0.293  Sum_probs=37.5

Q ss_pred             eCCCeeecCCCCeEEecccCCCCccchH-HHHHHHHHHHHHHHHHHHcCCC
Q 017664          258 VDENLRVRGFKNVFAIGDITDIPEIKQG-YLAQKHALVTAKNLKKLMMGRN  307 (368)
Q Consensus       258 vd~~~~~~~~~~ifa~GD~~~~~~~~~~-~~a~~~g~~aa~~i~~~l~g~~  307 (368)
                      .++.|+++..+|+|.+|=+.+.    ++ ..|..||-+|+-|.+..+. ++
T Consensus       350 L~~~Le~k~~~~lf~AGQinGt----~GYeEaaaqGl~AgiNaa~~~~-~~  395 (618)
T PRK05192        350 LKPTLETKKIKGLFFAGQINGT----TGYEEAAAQGLIAGINAALKVQ-GE  395 (618)
T ss_pred             cchhheecCCCCeEECcccCCC----hHHHHHHHHHHHHHHHHHHHhc-CC
Confidence            3457899889999999999976    34 4799999999999998877 44

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.91  E-value=2.2e-08  Score=94.07  Aligned_cols=42  Identities=21%  Similarity=0.249  Sum_probs=37.1

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWAS   56 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~   56 (368)
                      +++||+||||||||++||+.|++ |++|+|+|+.+..+.+...
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~   44 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC   44 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence            57899999999999999999985 8999999999988765443

>PRK09897 hypothetical protein; Provisional

Probab=98.91  E-value=9.6e-09  Score=98.87  Aligned_cols=145  Identities=19%  Similarity=0.262  Sum_probs=81.6

Q ss_pred             CCcEEEECCChHHHHHHHHhhc---CCcEEEEcCCCcee--eeccc-------eee---------------eeccc----
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYFE--ITWAS-------LRA---------------VVEPS----   64 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~~~--~~~~~-------~~~---------------~~~~~----   64 (368)
                      +++|+||||||+|+++|.+|.+   ..+|+|||++...|  ..|..       +..               .....    
T Consensus         1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~   80 (534)
T PRK09897          1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH   80 (534)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence            3589999999999999999963   56999999987655  11110       000               00000    


Q ss_pred             c----------cccceeecccc---c-------------Cc--eeEE-EeEEEEeecc----EEEecC-CeEEEecEEEE
Q 017664           65 F----------AVRSVINHGDY---L-------------SN--VKIV-VSTAVSITDT----EVVTAG-GQTFVYDYVVV  110 (368)
Q Consensus        65 ~----------~~~~~~~~~~~---~-------------~~--~~~~-~~~~~~~~~~----~v~~~~-g~~~~~d~lvl  110 (368)
                      +          ....+.++..+   +             .+  +.+. ..+++.+...    .+.+.+ +..+.+|+||+
T Consensus        81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVL  160 (534)
T PRK09897         81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVI  160 (534)
T ss_pred             HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEE
Confidence            0          00011111111   0             01  3343 3367777532    445444 46789999999


Q ss_pred             ecCCCCCCCCchHHHH-H-HHH-HHHHHHhcCCeEEEEcCchhHHHHHHHHhhh
Q 017664          111 ATGHVESVPKSRTERL-S-QYE-KDFEKVKSANSVLIVGGGPTGVELAGEIAVD  161 (368)
Q Consensus       111 AtG~~~~~p~~~~~~~-~-~~~-~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~  161 (368)
                      |||..+..+......+ . .+. ...... .+.+|+|+|.|.+++|.+..|..+
T Consensus       161 AtGh~~p~~~~~~~~yi~~pw~~~~~~~i-~~~~V~I~GtGLt~iD~v~~Lt~~  213 (534)
T PRK09897        161 ATGHVWPDEEEATRTYFPSPWSGLMEAKV-DACNVGIMGTSLSGLDAAMAVAIQ  213 (534)
T ss_pred             CCCCCCCCCChhhccccCCCCcchhhcCC-CCCeEEEECCCHHHHHHHHHHHhc
Confidence            9998632111110000 0 000 111122 368999999999999999888754

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=98.89  E-value=2.1e-08  Score=92.85  Aligned_cols=63  Identities=17%  Similarity=0.175  Sum_probs=50.8

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCCcE-EecCEEEEccCCCCCchhhhcccc
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSGET-IDTDCHFMCTGKAMASSWLRETIL  246 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~-i~~d~vi~a~G~~p~~~~~~~~~l  246 (368)
                      ++...+.+.++++|++++++++|+.++..++   .+.+.+|++ ++|+.||.|.|-.. ..+++..++
T Consensus       154 ~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~A-d~la~~~g~  220 (429)
T COG0579         154 ELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYA-DPLAQMAGI  220 (429)
T ss_pred             HHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhH-HHHHHHhCC
Confidence            5678888888899999999999999988655   567788876 99999999999763 445555554

>PRK06847 hypothetical protein; Provisional

Probab=98.87  E-value=1.8e-08  Score=94.17  Aligned_cols=55  Identities=22%  Similarity=0.123  Sum_probs=46.1

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCCC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMA  237 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~  237 (368)
                      .+.+.+.+.+++.|++++.++++..++.+++  .+.+.+|+++++|.||.|+|..+.
T Consensus       108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~  164 (375)
T PRK06847        108 ALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSK  164 (375)
T ss_pred             HHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcc
Confidence            5667777788888999999999998876655  677888999999999999998754

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.87  E-value=1.2e-07  Score=91.44  Aligned_cols=48  Identities=15%  Similarity=0.184  Sum_probs=40.3

Q ss_pred             eCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCCCC
Q 017664          258 VDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNK  308 (368)
Q Consensus       258 vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~  308 (368)
                      ++++|+++..+|+|.+|++.+...   -..|..||.+|+.|++..+.|+++
T Consensus       348 l~~~le~k~~~gLf~AGqi~Gt~G---y~eAaa~Gl~Ag~naa~~~~~~~~  395 (617)
T TIGR00136       348 LKPTLETKLIQGLFFAGQINGTTG---YEEAAAQGLMAGINAALKLQNKEP  395 (617)
T ss_pred             CchhheeCCCCCeEEccccCCcch---HHHHHHHHHHHHHHHHHHhcCCCC
Confidence            456899977999999999988532   348999999999999999988764

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.83  E-value=1.4e-09  Score=106.98  Aligned_cols=98  Identities=9%  Similarity=0.080  Sum_probs=66.3

Q ss_pred             hcCCeEEEEcCch--hHHHHHHHHhhhCCCCeEEEEecCccccccc--------------CchhHHHHHHHHHcCCcEEE
Q 017664          137 KSANSVLIVGGGP--TGVELAGEIAVDFPDKKVILVHRGPKLLEFV--------------GSRASQIALDWLTSKKVEVI  200 (368)
Q Consensus       137 ~~~~~v~VvG~g~--~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~--------------~~~~~~~~~~~l~~~gv~i~  200 (368)
                      ...+++.++|++.  ++.+++..+..  .+..++++.+..+++...              ...+...+.+.+++.|++++
T Consensus       155 ~~~~~~~~~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~  232 (574)
T PRK12842        155 PPLKTITFIGMMFNSSNADLKHFFNA--TRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPIL  232 (574)
T ss_pred             CCcccccccceecccchHHHHHHHhh--ccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEE
Confidence            3567888999988  67788877653  345555544433333211              13466778888899999999


Q ss_pred             ecceeeecccCCC---eEEc--CCCc-EEecC-EEEEccCCCC
Q 017664          201 LNQSVTLNTISDG---LIET--SSGE-TIDTD-CHFMCTGKAM  236 (368)
Q Consensus       201 ~~~~v~~i~~~~~---~v~~--~~g~-~i~~d-~vi~a~G~~p  236 (368)
                      +++.++++..+++   .+..  .+++ .+.++ .||+|+|-.+
T Consensus       233 ~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~  275 (574)
T PRK12842        233 TGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFS  275 (574)
T ss_pred             eCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence            9999998876655   3433  2343 47786 7999999665

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.83  E-value=8.7e-08  Score=87.40  Aligned_cols=210  Identities=16%  Similarity=0.189  Sum_probs=116.9

Q ss_pred             CCcCCCCCCcEEEECCChHHHHHHHHhhc------CCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeE
Q 017664            9 TAAGLVEKKKVVVIGGGVGGSLLAYHIQS------FADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKI   82 (368)
Q Consensus         9 ~~~~~~~~~~vvIIGaG~aGl~aA~~L~~------g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (368)
                      ....|...+|++||||||+|+.+|+.+..      ..++.++|......-.....       .. ... ...   ..   
T Consensus        11 ~~~~~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~~r~~~~-------~~-~~~-~~c---~~---   75 (486)
T COG2509          11 QEALMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIEQRLCPK-------DE-KKL-EKC---PK---   75 (486)
T ss_pred             hHHHhhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccchhhhhccc-------cc-cch-hhc---CC---
Confidence            33557778999999999999999998862      67899999876443111100       00 000 000   00   


Q ss_pred             EEeEEEEeeccEEEecCCeEEEecEEEEecCCCCCCCCchHHHHHHHHHHHHHH-hcCCeEEEEcCchhH-----HHHHH
Q 017664           83 VVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQYEKDFEKV-KSANSVLIVGGGPTG-----VELAG  156 (368)
Q Consensus        83 ~~~~~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~~~~~~~~~~~~~~-~~~~~v~VvG~g~~~-----~e~a~  156 (368)
                             +++..+...-|-.-.+..+++|  .+|..=+.-.+...+.....+.. ..+...+-.|++-.+     .+-..
T Consensus        76 -------~~~~~I~~G~GgaG~fs~g~ln--l~P~~Gg~~~~~~~d~~~~~~~~~~vd~~~vqfG~~g~~~~~~~~e~ik  146 (486)
T COG2509          76 -------CDPCPIVIGFGGAGLFSDGILN--LRPIRGGDVHERTKDTDEFWELVNLVDESNVQFGAPGAGTFSDLTEQIK  146 (486)
T ss_pred             -------CCCceeEeccccccccccccee--cccccccchhhhhCChHHHHHHHhccchhheecCCCcCcccCCchhhhh
Confidence                   2222222212222223334444  22321110011111222222222 223444556655111     11122


Q ss_pred             HHhhhCCCCeEEEEe-cCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEcc
Q 017664          157 EIAVDFPDKKVILVH-RGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCT  232 (368)
Q Consensus       157 ~l~~~~~~~~v~~i~-~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~  232 (368)
                      .+..+..+....++. +.+++....-+.+...+.+.+++.|++++++++|..++..++   .+.+.+|+++++|.||+|+
T Consensus       147 d~e~~aa~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~  226 (486)
T COG2509         147 DIEFRAAGAGEEILPIYQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAP  226 (486)
T ss_pred             HHHHHHhCCCceeeeccccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEcc
Confidence            222222344444443 334444455668888899999999999999999999988776   7889999999999999999


Q ss_pred             CCCCCchhhhc
Q 017664          233 GKAMASSWLRE  243 (368)
Q Consensus       233 G~~p~~~~~~~  243 (368)
                      |... .+|+..
T Consensus       227 Grsg-~dw~~~  236 (486)
T COG2509         227 GRSG-RDWFEM  236 (486)
T ss_pred             Ccch-HHHHHH
Confidence            9873 444443

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.82  E-value=4.7e-08  Score=93.51  Aligned_cols=44  Identities=18%  Similarity=0.240  Sum_probs=37.2

Q ss_pred             cCCCCCCcEEEECCChHHHHHHHHhhc-----CCcEEEEcCCCceeeec
Q 017664           11 AGLVEKKKVVVIGGGVGGSLLAYHIQS-----FADVVLIDEKEYFEITW   54 (368)
Q Consensus        11 ~~~~~~~~vvIIGaG~aGl~aA~~L~~-----g~~v~lie~~~~~~~~~   54 (368)
                      +...++++++|||||.|||+||.+|.+     |.+|+|+|+++..|+..
T Consensus        17 ~~~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~   65 (576)
T PRK13977         17 PEGVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSL   65 (576)
T ss_pred             CCCCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCc
Confidence            344456899999999999999999974     68999999999988654

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.81  E-value=3.7e-08  Score=91.13  Aligned_cols=48  Identities=23%  Similarity=0.385  Sum_probs=40.3

Q ss_pred             eCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCCCC
Q 017664          258 VDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNK  308 (368)
Q Consensus       258 vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~  308 (368)
                      .+++|+++..||+|++|.+.+.-.   -..|..+|.+|+.|+.+.+.|+++
T Consensus       321 l~~~l~~k~~~~l~~AGqi~g~~G---y~ea~a~G~~Ag~n~~~~~~g~~~  368 (436)
T PRK05335        321 LDPTLQLKKRPNLFFAGQITGVEG---YVESAASGLLAGINAARLALGKEP  368 (436)
T ss_pred             CchhccccCCCCEEeeeeecCchH---HHHHHHHHHHHHHHHHHHhcCCCC
Confidence            446899988999999999997632   248999999999999999998864

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.79  E-value=1.3e-07  Score=89.80  Aligned_cols=53  Identities=13%  Similarity=0.163  Sum_probs=40.7

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCCCe--EEcCCCcEEecCEEEEccCCC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISDGL--IETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~--v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      .+-+.+.+.+++.|++++.+++|..+..+++.  ....+|.++.+|.||.|+|..
T Consensus       109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~  163 (428)
T PRK10157        109 KFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVN  163 (428)
T ss_pred             HHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCC
Confidence            34455667778899999999999988765552  234566789999999999974

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.77  E-value=8.3e-08  Score=90.25  Aligned_cols=55  Identities=11%  Similarity=0.067  Sum_probs=46.0

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCCC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMA  237 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~  237 (368)
                      .+.+.+.+.+++.|++++.++++++++.+++  .+.+.+|+++++|.+|.|.|....
T Consensus       114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~  170 (392)
T PRK08773        114 LLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAST  170 (392)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence            5567777888889999999999998876655  567788889999999999998753

>PRK10015 oxidoreductase; Provisional

Probab=98.76  E-value=1.5e-07  Score=89.19  Aligned_cols=38  Identities=29%  Similarity=0.441  Sum_probs=33.8

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceee
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEI   52 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~   52 (368)
                      .++||+||||||||++||+.|++ |++|+|||+++..+.
T Consensus         4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~   42 (429)
T PRK10015          4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGC   42 (429)
T ss_pred             cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCc
Confidence            46899999999999999999985 999999999987553

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.76  E-value=2.1e-07  Score=89.36  Aligned_cols=49  Identities=24%  Similarity=0.314  Sum_probs=37.0

Q ss_pred             CCcEEeCCCeeecCCCCeEEecccCC-C-Ccc-----chHHHHHHHHHHHHHHHHHH
Q 017664          253 RGRLMVDENLRVRGFKNVFAIGDITD-I-PEI-----KQGYLAQKHALVTAKNLKKL  302 (368)
Q Consensus       253 ~g~i~vd~~~~~~~~~~ifa~GD~~~-~-~~~-----~~~~~a~~~g~~aa~~i~~~  302 (368)
                      .|.+.+|.+.|+ ..|++||+|+|+. . ...     .....+.-.|+.|++++.+.
T Consensus       310 ~GGi~vd~~~~t-~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~aa~~  365 (466)
T PRK08401        310 IGGISVDTFYRT-GIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISRE  365 (466)
T ss_pred             CCCEEECCCCcc-cCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhhh
Confidence            478999999998 7999999999974 2 111     12345778899999998753

>PLN02463 lycopene beta cyclase

Probab=98.75  E-value=3.8e-08  Score=93.25  Aligned_cols=105  Identities=19%  Similarity=0.230  Sum_probs=65.8

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeee--ccc----e----------------eeeeccc---ccc
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEIT--WAS----L----------------RAVVEPS---FAV   67 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~--~~~----~----------------~~~~~~~---~~~   67 (368)
                      ...+||+||||||||+++|..|+ +|.+|+|+|+.+....+  +..    +                .......   ...
T Consensus        26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~  105 (447)
T PLN02463         26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLD  105 (447)
T ss_pred             ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCcccc
Confidence            34689999999999999999997 49999999997643211  100    0                0000000   000


Q ss_pred             cce--eecccc---------cCceeEEEeEEEEeecc----EEEecCCeEEEecEEEEecCCCCCC
Q 017664           68 RSV--INHGDY---------LSNVKIVVSTAVSITDT----EVVTAGGQTFVYDYVVVATGHVESV  118 (368)
Q Consensus        68 ~~~--~~~~~~---------~~~~~~~~~~~~~~~~~----~v~~~~g~~~~~d~lvlAtG~~~~~  118 (368)
                      ..+  ....++         ..++++....+..++..    .|.+.+|.++++|.||.|+|..+.+
T Consensus       106 ~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l  171 (447)
T PLN02463        106 RPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRCL  171 (447)
T ss_pred             CcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcCc
Confidence            000  000000         12567777777776532    5777888889999999999998544

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.75  E-value=1.1e-07  Score=91.47  Aligned_cols=53  Identities=17%  Similarity=0.174  Sum_probs=46.6

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGK  234 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~  234 (368)
                      ..+.+.+.+.+++.|++|+++++|++|..+++   ++.+.+|+.+++|.||.....
T Consensus       224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~  279 (487)
T COG1233         224 GALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP  279 (487)
T ss_pred             HHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence            37788899999999999999999999998875   677777778999999998776

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.75  E-value=9.7e-07  Score=81.65  Aligned_cols=49  Identities=18%  Similarity=0.224  Sum_probs=38.1

Q ss_pred             CcEEeCCCeeecCCCCeEEecccCCCCcc-------chHHHHHHHHHHHHHHHHHHH
Q 017664          254 GRLMVDENLRVRGFKNVFAIGDITDIPEI-------KQGYLAQKHALVTAKNLKKLM  303 (368)
Q Consensus       254 g~i~vd~~~~~~~~~~ifa~GD~~~~~~~-------~~~~~a~~~g~~aa~~i~~~l  303 (368)
                      |.|.||.+.|| +.|++||+|.|+.....       ++--.+.-.|..+|++|...+
T Consensus       342 GGI~vD~~GrT-si~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~~aA~~i~~~~  397 (518)
T COG0029         342 GGIAVDANGRT-SIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIAGRL  397 (518)
T ss_pred             ccEEECCCCcc-cCcccEEeeeecccccccchhhhhhhHHHHHHHHHHHHHHhhccc
Confidence            78999999999 89999999999865321       123357777888888888654

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.74  E-value=9.5e-08  Score=86.29  Aligned_cols=96  Identities=21%  Similarity=0.286  Sum_probs=76.4

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc---c--------cccc-----CchhHHHHHHHHHcCCcEEEecce
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK---L--------LEFV-----GSRASQIALDWLTSKKVEVILNQS  204 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~---~--------l~~~-----~~~~~~~~~~~l~~~gv~i~~~~~  204 (368)
                      +++|||+|++|+++|..|.+  .+.+|+++++.+.   +        .|.+     +.++...+.+.+++.|+++++ +.
T Consensus         2 dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~   78 (300)
T TIGR01292         2 DVIIIGAGPAGLTAAIYAAR--ANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EE   78 (300)
T ss_pred             cEEEECCCHHHHHHHHHHHH--CCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EE
Confidence            68999999999999999885  4789999997641   1        1222     245667788889999999998 78


Q ss_pred             eeecccCCC--eEEcCCCcEEecCEEEEccCCCCCch
Q 017664          205 VTLNTISDG--LIETSSGETIDTDCHFMCTGKAMASS  239 (368)
Q Consensus       205 v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~~  239 (368)
                      +..++.+++  .+.+.+++++++|.+|+|+|..|..+
T Consensus        79 v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~  115 (300)
T TIGR01292        79 VIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKL  115 (300)
T ss_pred             EEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccC
Confidence            888877655  67777788999999999999987643

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.74  E-value=2.3e-07  Score=87.38  Aligned_cols=54  Identities=15%  Similarity=0.087  Sum_probs=42.4

Q ss_pred             hhHHHHHHHHHcC-CcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCC
Q 017664          183 RASQIALDWLTSK-KVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       183 ~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                      .+.+.+.+.+++. +++++.++++.+++.+++  .+.+.+|+++.+|.+|.|.|...
T Consensus       110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S  166 (396)
T PRK08163        110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKS  166 (396)
T ss_pred             HHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcCh
Confidence            3455666666665 599999999998876655  66778888999999999999753

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.70  E-value=1.6e-07  Score=88.43  Aligned_cols=99  Identities=17%  Similarity=0.225  Sum_probs=75.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---ccCchhH---------HHHHHHHHcCCcEEEecceee
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE---FVGSRAS---------QIALDWLTSKKVEVILNQSVT  206 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~---~~~~~~~---------~~~~~~l~~~gv~i~~~~~v~  206 (368)
                      .++++|||+|+.|+.+|..|++.....+|+++++.+.+..   .....+.         ..-.+.+++.||+++.++.|.
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~   82 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK   82 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence            5689999999999999999987655668999987754311   1111110         001345677899999999998


Q ss_pred             ecccCCCeEEcCCCcEEecCEEEEccCCCCC
Q 017664          207 LNTISDGLIETSSGETIDTDCHFMCTGKAMA  237 (368)
Q Consensus       207 ~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~  237 (368)
                      .+..++..+.+.+|+++.+|.+|+|||.+|.
T Consensus        83 ~id~~~~~v~~~~g~~~~yd~LViATGs~~~  113 (396)
T PRK09754         83 TLGRDTRELVLTNGESWHWDQLFIATGAAAR  113 (396)
T ss_pred             EEECCCCEEEECCCCEEEcCEEEEccCCCCC
Confidence            8887766888888989999999999999875

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=98.70  E-value=1.5e-07  Score=82.53  Aligned_cols=191  Identities=15%  Similarity=0.238  Sum_probs=106.2

Q ss_pred             cCCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceee--eccceeeeeccccccccee-----ecccccCceeE
Q 017664           11 AGLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEI--TWASLRAVVEPSFAVRSVI-----NHGDYLSNVKI   82 (368)
Q Consensus        11 ~~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~   82 (368)
                      ..|.+..|++|||||.-|+++|++|+ +|.+++++|+.+....  ........+++.+.+..+.     .+..|...   
T Consensus         2 ~~~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~---   78 (399)
T KOG2820|consen    2 SEMVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNL---   78 (399)
T ss_pred             cccccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhC---
Confidence            35667889999999999999999998 5999999998864321  1122222333333222111     11111110   


Q ss_pred             EEeEEEEeeccEEEecCCeEEEecEEEEecCCCCCCCCchHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhC
Q 017664           83 VVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDF  162 (368)
Q Consensus        83 ~~~~~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~  162 (368)
                                   ....|..+.+....+-.|..      +...+.+......+-....+++          ...++.+++
T Consensus        79 -------------~~~~g~~~~~~t~~~~~~~~------e~~~~~sv~~~~k~~~l~h~~l----------~seEvrk~f  129 (399)
T KOG2820|consen   79 -------------PEESGVKLHCGTGLLISGDP------ERQRLDSVAANLKRKGLAHSVL----------ISEEVRKRF  129 (399)
T ss_pred             -------------hhhhceeecccceeeecCcH------HHHHHHHHHHHHhhhhhhhhhh----------hHHHHHHhC
Confidence                         00112233333222222211      1123333333322221122221          245667767


Q ss_pred             CC-Ce-----EEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccC----CC-eEEcCCCcEEecCEEEEc
Q 017664          163 PD-KK-----VILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTIS----DG-LIETSSGETIDTDCHFMC  231 (368)
Q Consensus       163 ~~-~~-----v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~----~~-~v~~~~g~~i~~d~vi~a  231 (368)
                      |+ .+     +-+++.....  -........++..+++.|+.++.+..++.++..    .. .|++.+|..+.++.+|++
T Consensus       130 P~~~~l~d~~~G~~n~~gGv--i~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t  207 (399)
T KOG2820|consen  130 PSNIPLPDGWQGVVNESGGV--INAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFT  207 (399)
T ss_pred             CCCccCCcchhhcccccccE--eeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEE
Confidence            64 11     1111111111  123355677888999999999999999877732    22 789999999999999999


Q ss_pred             cCCC
Q 017664          232 TGKA  235 (368)
Q Consensus       232 ~G~~  235 (368)
                      +|.-
T Consensus       208 ~GaW  211 (399)
T KOG2820|consen  208 VGAW  211 (399)
T ss_pred             ecHH
Confidence            9965

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.70  E-value=2e-07  Score=87.94  Aligned_cols=55  Identities=13%  Similarity=0.058  Sum_probs=45.8

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCCC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMA  237 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~  237 (368)
                      .+.+.+.+.+++.|++++.+++++.++.+++  .+.+.+|+++.+|+||.|.|....
T Consensus       112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~  168 (403)
T PRK07333        112 VLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSK  168 (403)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChH
Confidence            5667777888888999999999998876655  577788889999999999997643

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=98.69  E-value=1.5e-07  Score=88.03  Aligned_cols=52  Identities=12%  Similarity=0.083  Sum_probs=42.7

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      .+...+.+.+++.|++++.+++|..++.+++  .+.+.++ ++.+|.||+|+|..
T Consensus       146 ~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~  199 (380)
T TIGR01377       146 KALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAW  199 (380)
T ss_pred             HHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcc
Confidence            5567777888889999999999999887655  5666666 79999999999965

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.69  E-value=4.7e-07  Score=85.03  Aligned_cols=53  Identities=8%  Similarity=0.026  Sum_probs=42.6

Q ss_pred             hhHHHHHHHHHcCC-cEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCC
Q 017664          183 RASQIALDWLTSKK-VEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       183 ~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                      .+.+.+.+.+++.| ++++ ++.++.++.+++  .+.+.+|+++.+|.+|.|.|...
T Consensus       112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S  167 (388)
T PRK07608        112 LIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHS  167 (388)
T ss_pred             HHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCc
Confidence            55667777788877 9999 888888875544  67778888899999999999864

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.68  E-value=1.9e-07  Score=87.64  Aligned_cols=53  Identities=19%  Similarity=0.172  Sum_probs=44.4

Q ss_pred             hhHHHHHHHHHcCC-cEEEecceeeecccCCC--eEEcC-CCcEEecCEEEEccCCC
Q 017664          183 RASQIALDWLTSKK-VEVILNQSVTLNTISDG--LIETS-SGETIDTDCHFMCTGKA  235 (368)
Q Consensus       183 ~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~~~--~v~~~-~g~~i~~d~vi~a~G~~  235 (368)
                      .+.+.+.+.+++.+ |+++.++.|+.++.+++  .+++. +|++++||++|-|=|..
T Consensus       105 ~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~  161 (387)
T COG0654         105 DLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGAN  161 (387)
T ss_pred             HHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCc
Confidence            56677788887665 99999999999988765  56667 99999999999999965

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.68  E-value=7.4e-07  Score=83.07  Aligned_cols=47  Identities=15%  Similarity=0.258  Sum_probs=39.4

Q ss_pred             CCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCCCC
Q 017664          259 DENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNK  308 (368)
Q Consensus       259 d~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~  308 (368)
                      +++|+++..||+|.+|=+.+...   -..|..||-+|+-|+++.+.|+++
T Consensus       321 ~~~l~~k~~~~lf~AGQi~G~~G---Y~Eaaa~Gl~agina~~~~~~~~~  367 (433)
T TIGR00137       321 TASLHFKDRQTLFFAGQLTGVEG---YVASTAGGWLAGINAARLALGEPL  367 (433)
T ss_pred             hHHhccCCCCCEEECcccccchH---HHHHHHHHHHHHHHHHHHHcCCCC
Confidence            34688888999999999997632   247999999999999999999864

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.67  E-value=3.6e-07  Score=82.25  Aligned_cols=54  Identities=13%  Similarity=0.089  Sum_probs=41.9

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcC-CCcEEecCEEEEccCCCC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETS-SGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~-~g~~i~~d~vi~a~G~~p  236 (368)
                      .+.+.+.+.+++.|++++.+++++.+..+++  .+.+. ++.++++|++|.|+|...
T Consensus        92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s  148 (295)
T TIGR02032        92 AFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS  148 (295)
T ss_pred             HHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence            4567777888889999999999998876655  34333 345899999999999763

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.66  E-value=5.8e-07  Score=84.91  Aligned_cols=56  Identities=13%  Similarity=0.022  Sum_probs=47.9

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCC-C---eEEcCCCcEEecCEEEEccCCCCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISD-G---LIETSSGETIDTDCHFMCTGKAMA  237 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~---~v~~~~g~~i~~d~vi~a~G~~p~  237 (368)
                      .++.+.+.+.++..|.+++++++|++|..++ +   .+++.+|+++.++.||....+.|.
T Consensus       232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~  291 (443)
T PTZ00363        232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD  291 (443)
T ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence            3677888888899999999999999997664 3   588899999999999998887765

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.65  E-value=6e-07  Score=84.89  Aligned_cols=52  Identities=19%  Similarity=0.050  Sum_probs=40.3

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccC-CC---eEEcCCCcEEecCEEEEccCCC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTIS-DG---LIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~-~~---~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      .+...+.+.+++.|++++.+++|..++.. ++   .+.+.+| ++.++.+|+++|-.
T Consensus       184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~  239 (407)
T TIGR01373       184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGH  239 (407)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChh
Confidence            44555778889999999999999998643 33   4677777 69999998887754

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=98.65  E-value=1.8e-07  Score=89.60  Aligned_cols=62  Identities=15%  Similarity=0.092  Sum_probs=47.3

Q ss_pred             hhHHHHHHHHHc----CC--cEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCCCCCchhhhcccc
Q 017664          183 RASQIALDWLTS----KK--VEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGKAMASSWLRETIL  246 (368)
Q Consensus       183 ~~~~~~~~~l~~----~g--v~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l  246 (368)
                      .+...+.+.+++    .|  ++++++++|+.++.+++   .|.+.+| ++.+|.||+|+|.. ...+++..++
T Consensus       212 ~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~-S~~La~~~Gi  282 (497)
T PTZ00383        212 KLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGY-SLLFAQKMGY  282 (497)
T ss_pred             HHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChh-HHHHHHHhCC
Confidence            567778888888    77  88999999999987633   5777777 69999999999966 2345554443

>TIGR00275 flavoprotein, HI0933 family

Probab=98.65  E-value=4.1e-07  Score=85.52  Aligned_cols=70  Identities=21%  Similarity=0.264  Sum_probs=50.1

Q ss_pred             CCeEEEEecCcccccc--cCchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCC
Q 017664          164 DKKVILVHRGPKLLEF--VGSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       164 ~~~v~~i~~~~~~l~~--~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      +.+++....+ ++.|.  ....+.+.+.+.+++.|+++++++.+..++.+++  .+.+ +++++.+|.||+|+|..
T Consensus        86 Gv~~~~~~~g-~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~  159 (400)
T TIGR00275        86 GLELKVEEDG-RVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGL  159 (400)
T ss_pred             CCeeEEecCC-EeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCc
Confidence            5555544322 23322  2356778888899999999999999998876554  4555 45689999999999964

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.65  E-value=8.8e-08  Score=87.79  Aligned_cols=45  Identities=18%  Similarity=0.254  Sum_probs=37.0

Q ss_pred             CCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCC
Q 017664          259 DENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGR  306 (368)
Q Consensus       259 d~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~  306 (368)
                      +.+|+++..||+|++|+.++...   -..|..||-+|+.|+++.++|+
T Consensus       347 ~~~l~~k~~~~lf~AGqi~G~~G---y~eaaa~G~~ag~na~~~~~g~  391 (392)
T PF01134_consen  347 LNTLETKKIPGLFFAGQINGTEG---YEEAAAQGLIAGINAARRLQGK  391 (392)
T ss_dssp             BTTSBBSSSBTEEE-GGGGTB-S---HHHHHHHHHHHHHHHHHHHTTS
T ss_pred             ccceEECCCCCceECCCCcchhH---HHHHHHHHHHHHHHHHHHHcCC
Confidence            34799988999999999998632   3578999999999999999876

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.64  E-value=2.4e-07  Score=87.48  Aligned_cols=54  Identities=13%  Similarity=0.195  Sum_probs=44.3

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                      .+.+.+.+.+++.|++++.++++..++.+++  .+.+.+|+++.+|++|.|.|...
T Consensus       113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S  168 (405)
T PRK05714        113 VVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANS  168 (405)
T ss_pred             HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCc
Confidence            4456667777888999999999998876655  57778888999999999999764

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.63  E-value=3e-07  Score=89.15  Aligned_cols=57  Identities=21%  Similarity=0.229  Sum_probs=43.0

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCCC---eEE--cCCC--cEEecCEEEEccC-CCCCch
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISDG---LIE--TSSG--ETIDTDCHFMCTG-KAMASS  239 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~--~~~g--~~i~~d~vi~a~G-~~p~~~  239 (368)
                      .+...+.+.+++.|+++++++.++++..+++   .+.  ..++  .++.++.||+|+| +..+.+
T Consensus       191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~  255 (506)
T PRK06481        191 YLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKD  255 (506)
T ss_pred             HHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHH
Confidence            4677788888999999999999999876655   233  3443  3688999999998 555543

>PRK08013 oxidoreductase; Provisional

Probab=98.63  E-value=4e-07  Score=85.84  Aligned_cols=54  Identities=4%  Similarity=0.044  Sum_probs=42.7

Q ss_pred             hhHHHHHHHHHcC-CcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCC
Q 017664          183 RASQIALDWLTSK-KVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       183 ~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                      .+...+.+.+++. |++++.++++..++.+++  .+.+.+|+++++|+||-|-|...
T Consensus       112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S  168 (400)
T PRK08013        112 VIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANS  168 (400)
T ss_pred             HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCc
Confidence            4455666666664 899999999998876555  56778899999999999999764

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.63  E-value=8.5e-07  Score=86.23  Aligned_cols=54  Identities=17%  Similarity=0.129  Sum_probs=46.3

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      ..+.+.+.+.+++.|+++++++.|.+|..+++   .|++.+|+++++|.||++++..
T Consensus       219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~  275 (502)
T TIGR02734       219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLH  275 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHH
Confidence            36778888889999999999999999887665   5788888899999999998754

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.62  E-value=4.9e-07  Score=86.69  Aligned_cols=38  Identities=34%  Similarity=0.574  Sum_probs=34.0

Q ss_pred             CcEEEECCChHHHHHHHHhhc-C--CcEEEEcCCCceeeec
Q 017664           17 KKVVVIGGGVGGSLLAYHIQS-F--ADVVLIDEKEYFEITW   54 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~~-g--~~v~lie~~~~~~~~~   54 (368)
                      ++|+|||||+|||+||+.|++ |  ++|+|+|+++.+|+..
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~   41 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKI   41 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceE
Confidence            479999999999999999985 6  8999999999988654

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.62  E-value=1.6e-06  Score=81.51  Aligned_cols=54  Identities=15%  Similarity=0.251  Sum_probs=44.9

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                      ..+.+.+.+.+++.|++++.++.|..++.+++  .+.+.+| ++.+|.+|+|+|...
T Consensus       149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s  204 (393)
T PRK11728        149 RAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMS  204 (393)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcch
Confidence            46777888889999999999999998876555  5667776 799999999999764

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.60  E-value=4.1e-07  Score=85.52  Aligned_cols=54  Identities=15%  Similarity=0.092  Sum_probs=42.7

Q ss_pred             hhHHHHHHHHHcC-CcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCC
Q 017664          183 RASQIALDWLTSK-KVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       183 ~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                      .+.+.+.+.+++. |++++.++++..++.+++  .+.+.+|+++.+|++|.|.|...
T Consensus       113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S  169 (391)
T PRK08020        113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANS  169 (391)
T ss_pred             HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCc
Confidence            3445666666665 999999999998876554  56777888999999999999874

>PRK07233 hypothetical protein; Provisional

Probab=98.59  E-value=1.6e-07  Score=89.57  Aligned_cols=54  Identities=19%  Similarity=0.134  Sum_probs=43.8

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      ..+.+.+.+.+++.|++++++++|++|+.+++  .+...+++++++|.||+|++..
T Consensus       198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~  253 (434)
T PRK07233        198 ATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPP  253 (434)
T ss_pred             HHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHH
Confidence            35778888889999999999999999987655  3344667789999999998753

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.59  E-value=2.4e-07  Score=88.56  Aligned_cols=100  Identities=13%  Similarity=0.196  Sum_probs=74.3

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc------cccc-----Cc--hhHHHHHHHHHcCCcEEEecceee
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL------LEFV-----GS--RASQIALDWLTSKKVEVILNQSVT  206 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~------l~~~-----~~--~~~~~~~~~l~~~gv~i~~~~~v~  206 (368)
                      ++++|||+|+.|+.+|..|++..++.+|+++++++.+      ++..     ++  ++.....+.+++.|++++.++.|.
T Consensus         1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~   80 (444)
T PRK09564          1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV   80 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence            3799999999999999999875456799999988753      1111     11  122233466788899999999999


Q ss_pred             ecccCCCeEEcCC---CcEEe--cCEEEEccCCCCCch
Q 017664          207 LNTISDGLIETSS---GETID--TDCHFMCTGKAMASS  239 (368)
Q Consensus       207 ~i~~~~~~v~~~~---g~~i~--~d~vi~a~G~~p~~~  239 (368)
                      .+..++..+.+.+   +++++  +|.+|+|||.+|..+
T Consensus        81 ~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~  118 (444)
T PRK09564         81 KVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIP  118 (444)
T ss_pred             EEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCC
Confidence            9887776555533   56666  999999999997643

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.59  E-value=1.6e-08  Score=99.39  Aligned_cols=41  Identities=22%  Similarity=0.222  Sum_probs=35.5

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceee
Q 017664           12 GLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEI   52 (368)
Q Consensus        12 ~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~   52 (368)
                      .....+||+|||+|++|+++|..+. +|.+|+|||+++.++.
T Consensus         8 ~~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg   49 (581)
T PRK06134          8 PPDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGG   49 (581)
T ss_pred             CCCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence            3455789999999999999999987 5999999999887654

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.57  E-value=3e-08  Score=97.05  Aligned_cols=102  Identities=17%  Similarity=0.104  Sum_probs=64.9

Q ss_pred             CCeEEEEcCchhHHHHHHH-------HhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccC
Q 017664          139 ANSVLIVGGGPTGVELAGE-------IAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTIS  211 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~-------l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~  211 (368)
                      ++..+++|++..+++.+..       +.+  .+.+|++..............+...+.+.+++.|+++++++.+.++..+
T Consensus       160 p~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~  237 (557)
T PRK07843        160 PLNMVVMQQDYVWLNLLKRHPRGVLRALK--VGARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVLLNTPLTDLYVE  237 (557)
T ss_pred             cccccccHHHHHHHHhhhcCchhHHHHHH--HHHHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEEeCCEEEEEEEe
Confidence            5668899999988887753       111  1233333332222223345567788889999999999999999988766


Q ss_pred             CC---eEEc-CCCc--EEecC-EEEEccC-CCCCchhhh
Q 017664          212 DG---LIET-SSGE--TIDTD-CHFMCTG-KAMASSWLR  242 (368)
Q Consensus       212 ~~---~v~~-~~g~--~i~~d-~vi~a~G-~~p~~~~~~  242 (368)
                      ++   .+.. .+++  .+.++ .||+||| +.+|.++++
T Consensus       238 ~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~  276 (557)
T PRK07843        238 DGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRA  276 (557)
T ss_pred             CCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHH
Confidence            55   2322 2443  57785 6888666 555544433

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.57  E-value=2.6e-07  Score=86.04  Aligned_cols=98  Identities=12%  Similarity=0.127  Sum_probs=75.2

Q ss_pred             eEEEEcCchhHHHHHHHHhhh-CCCCeEEEEecCcccc--ccc---------CchhHHHHHHHHHcCCcEEEecceeeec
Q 017664          141 SVLIVGGGPTGVELAGEIAVD-FPDKKVILVHRGPKLL--EFV---------GSRASQIALDWLTSKKVEVILNQSVTLN  208 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~-~~~~~v~~i~~~~~~l--~~~---------~~~~~~~~~~~l~~~gv~i~~~~~v~~i  208 (368)
                      +|+|||+|+.|+.+|..+.++ .++.+|+++++++.+.  +..         ..++...+.+.+++.|++++.+ .|..+
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i   79 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI   79 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence            589999999999999998643 3567999999887532  111         1123334556778889999875 78888


Q ss_pred             ccCCCeEEcCCCcEEecCEEEEccCCCCCch
Q 017664          209 TISDGLIETSSGETIDTDCHFMCTGKAMASS  239 (368)
Q Consensus       209 ~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  239 (368)
                      ..++..|.+.+|+++++|.+|+|||..|..+
T Consensus        80 d~~~~~V~~~~g~~~~yD~LviAtG~~~~~~  110 (364)
T TIGR03169        80 DPDRRKVLLANRPPLSYDVLSLDVGSTTPLS  110 (364)
T ss_pred             ecccCEEEECCCCcccccEEEEccCCCCCCC
Confidence            8777789999998999999999999987644

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK06184 hypothetical protein; Provisional

Probab=98.56  E-value=6.3e-07  Score=87.08  Aligned_cols=52  Identities=12%  Similarity=0.037  Sum_probs=40.9

Q ss_pred             hHHHHHHHHHcCCcEEEecceeeecccCCC--eEEc---CCCcEEecCEEEEccCCC
Q 017664          184 ASQIALDWLTSKKVEVILNQSVTLNTISDG--LIET---SSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       184 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~---~~g~~i~~d~vi~a~G~~  235 (368)
                      +.+.+.+.+++.|++++.++++..++.+++  .+.+   .+++++++|++|.|.|..
T Consensus       111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~  167 (502)
T PRK06184        111 TERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGR  167 (502)
T ss_pred             HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCc
Confidence            445667778888999999999999887655  3444   556789999999999965

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.56  E-value=1.1e-06  Score=82.23  Aligned_cols=53  Identities=19%  Similarity=0.222  Sum_probs=43.0

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      ..+...+.+.+.+.|++++.+++|+.++.+++  .+.+++| ++.+|.||+|+|..
T Consensus       149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~  203 (376)
T PRK11259        149 ELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAW  203 (376)
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcc
Confidence            34556666777889999999999999887655  5777777 79999999999975

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=98.56  E-value=5.1e-07  Score=84.42  Aligned_cols=38  Identities=29%  Similarity=0.492  Sum_probs=33.5

Q ss_pred             CcEEEECCChHHHHHHHHhhc-C--CcEEEEcCCCceeeec
Q 017664           17 KKVVVIGGGVGGSLLAYHIQS-F--ADVVLIDEKEYFEITW   54 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~~-g--~~v~lie~~~~~~~~~   54 (368)
                      ++++|||||++||+||++|++ +  .+++|+|+++..|+..
T Consensus         1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l   41 (444)
T COG1232           1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLL   41 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceE
Confidence            369999999999999999985 5  8999999999887543

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.56  E-value=5.5e-07  Score=87.27  Aligned_cols=55  Identities=13%  Similarity=0.041  Sum_probs=44.2

Q ss_pred             CchhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCC-----cEEecCEEEEccCCC
Q 017664          181 GSRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSG-----ETIDTDCHFMCTGKA  235 (368)
Q Consensus       181 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g-----~~i~~d~vi~a~G~~  235 (368)
                      ...+.+.+.+.+++.|++|+++++|++|..+++   .+.+.++     +++.+|.||+++...
T Consensus       231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~  293 (492)
T TIGR02733       231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ  293 (492)
T ss_pred             HHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence            346888899999999999999999999987765   3555444     578999999997753

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.56  E-value=8.7e-07  Score=82.49  Aligned_cols=50  Identities=28%  Similarity=0.424  Sum_probs=39.9

Q ss_pred             hhHHHHHHHHHcC-CcEEEecceeeecccCCCeEEcCCCcEEecCEEEEccCCC
Q 017664          183 RASQIALDWLTSK-KVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       183 ~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      .+...+.+.+++. |++++++++|..++..  .+.+.+|+ +.+|.||+|+|..
T Consensus       146 ~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~--~v~t~~g~-i~a~~VV~A~G~~  196 (365)
T TIGR03364       146 EAIPALAAYLAEQHGVEFHWNTAVTSVETG--TVRTSRGD-VHADQVFVCPGAD  196 (365)
T ss_pred             HHHHHHHHHHHhcCCCEEEeCCeEEEEecC--eEEeCCCc-EEeCEEEECCCCC
Confidence            4556677777665 9999999999988643  78888774 7899999999975

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK06834 hypothetical protein; Provisional

Probab=98.55  E-value=4.3e-07  Score=87.57  Aligned_cols=55  Identities=22%  Similarity=0.303  Sum_probs=45.4

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCCC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMA  237 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~  237 (368)
                      .+.+.+.+.+++.|++++.+++++.++.+++  .+.+.+|+++.+|++|.|.|....
T Consensus       101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~  157 (488)
T PRK06834        101 HIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL  157 (488)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence            4566677888888999999999999887665  566677888999999999997653

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=98.55  E-value=6.2e-07  Score=86.27  Aligned_cols=49  Identities=16%  Similarity=0.063  Sum_probs=37.4

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTG  233 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G  233 (368)
                      .+.+.+.+.+++  .+++++++|+.|+.+++  .+.+.+|+++.+|.||+++.
T Consensus       227 ~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p  277 (463)
T PRK12416        227 TIIDRLEEVLTE--TVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAP  277 (463)
T ss_pred             HHHHHHHHhccc--ccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCC
Confidence            344555555543  57999999999987766  56677888899999999975

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.55  E-value=3.6e-07  Score=86.44  Aligned_cols=53  Identities=17%  Similarity=0.204  Sum_probs=40.6

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCC-----cEEecCEEEEccCCC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSG-----ETIDTDCHFMCTGKA  235 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g-----~~i~~d~vi~a~G~~  235 (368)
                      .+...+.+.+++.|++++++++|.+++.+++  .+.+.++     .++++|.||+|+|..
T Consensus       198 ~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~  257 (410)
T PRK12409        198 KFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVG  257 (410)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcC
Confidence            4556677888999999999999999876555  3333322     379999999999975

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.55  E-value=1.1e-06  Score=90.93  Aligned_cols=51  Identities=18%  Similarity=0.193  Sum_probs=41.9

Q ss_pred             CCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcC
Q 017664          253 RGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMG  305 (368)
Q Consensus       253 ~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g  305 (368)
                      .|.|.||.+.+| +.||+||+|||+..+ .+....+.-.|+.|+.++..++.+
T Consensus       361 ~GGi~vd~~~~T-~v~GLfAaGE~a~~~-~nsl~~a~v~G~~Ag~~a~~~~~~  411 (897)
T PRK13800        361 ASGVWVDEHART-TVPGLYAAGDLACVP-HNYMIGAFVFGDLAGAHAAGTLAE  411 (897)
T ss_pred             cceEEecCCCcc-cCCCeEechhccCcc-hhhhhhHHHhHHHHHHHHHHHHhc
Confidence            478999999999 799999999997653 245567889999999999877643

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.54  E-value=3.6e-07  Score=84.44  Aligned_cols=54  Identities=17%  Similarity=0.200  Sum_probs=39.7

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCCC--e--EEcC-CC--cEEecCEEEEccCCCC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISDG--L--IETS-SG--ETIDTDCHFMCTGKAM  236 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~--v~~~-~g--~~i~~d~vi~a~G~~p  236 (368)
                      .+.+.+.+.+++.|++++.++++..++.+++  .  +... +|  +++++|+||-|-|...
T Consensus       112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S  172 (356)
T PF01494_consen  112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHS  172 (356)
T ss_dssp             HHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-
T ss_pred             HHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCccc
Confidence            4567788888888999999999998876655  2  2222 34  3789999999999874

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.54  E-value=4.8e-07  Score=84.98  Aligned_cols=99  Identities=22%  Similarity=0.220  Sum_probs=60.6

Q ss_pred             cEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeec--cc----e-----eee-----------ecccccc----cc-
Q 017664           18 KVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITW--AS----L-----RAV-----------VEPSFAV----RS-   69 (368)
Q Consensus        18 ~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~--~~----~-----~~~-----------~~~~~~~----~~-   69 (368)
                      ||+||||||||+++|+.|++ |.+|+|||+++..+.+.  ..    +     ...           ..+....    .. 
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG   80 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence            79999999999999999874 99999999987654321  10    0     000           0000000    00 


Q ss_pred             eeecccc---------cCceeEEEeEEEEeecc-----EEEecCCeEEEecEEEEecCCCC
Q 017664           70 VINHGDY---------LSNVKIVVSTAVSITDT-----EVVTAGGQTFVYDYVVVATGHVE  116 (368)
Q Consensus        70 ~~~~~~~---------~~~~~~~~~~~~~~~~~-----~v~~~~g~~~~~d~lvlAtG~~~  116 (368)
                      ......+         ..++.+....+..+...     .+.+.++..++++.||.|+|..+
T Consensus        81 ~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        81 SVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             EEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence            0000000         01456666666665432     45666777899999999999876

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.53  E-value=3.4e-07  Score=86.02  Aligned_cols=36  Identities=31%  Similarity=0.397  Sum_probs=32.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCc
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEY   49 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~   49 (368)
                      ++.+||+||||||+|+++|..|++ |.+|+|+|+.+.
T Consensus         5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~   41 (388)
T PRK07494          5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP   41 (388)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence            446899999999999999999985 999999999864

>PRK07190 hypothetical protein; Provisional

Probab=98.51  E-value=9.3e-07  Score=85.15  Aligned_cols=52  Identities=23%  Similarity=0.220  Sum_probs=42.2

Q ss_pred             hHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCC
Q 017664          184 ASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       184 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      +...+.+.+++.|++++.+++++.++.+++  .+.+.+|+++.++++|.|.|..
T Consensus       111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~  164 (487)
T PRK07190        111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSR  164 (487)
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCC
Confidence            445566777888999999999999887655  4566778889999999999964

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.50  E-value=3.8e-07  Score=85.03  Aligned_cols=100  Identities=29%  Similarity=0.355  Sum_probs=63.0

Q ss_pred             cEEEECCChHHHHHHHHh--h-cCCcEEEEcCCCceeee----cccee-------eee----------ccccc----c-c
Q 017664           18 KVVVIGGGVGGSLLAYHI--Q-SFADVVLIDEKEYFEIT----WASLR-------AVV----------EPSFA----V-R   68 (368)
Q Consensus        18 ~vvIIGaG~aGl~aA~~L--~-~g~~v~lie~~~~~~~~----~~~~~-------~~~----------~~~~~----~-~   68 (368)
                      |||||||||||+++|.+|  + +|.+|+|||+++..+++    |....       ..+          .+...    . .
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~   80 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP   80 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence            899999999999999999  4 49999999998765211    11100       000          00000    0 0


Q ss_pred             c-eeecccc---------cCceeEEEeEEEEeecc----EEEecCCeEEEecEEEEecCCCCC
Q 017664           69 S-VINHGDY---------LSNVKIVVSTAVSITDT----EVVTAGGQTFVYDYVVVATGHVES  117 (368)
Q Consensus        69 ~-~~~~~~~---------~~~~~~~~~~~~~~~~~----~v~~~~g~~~~~d~lvlAtG~~~~  117 (368)
                      + ......+         ..++.++...+..++..    .+.+.+|..++++.||-|.|..+.
T Consensus        81 Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~  143 (374)
T PF05834_consen   81 YCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP  143 (374)
T ss_pred             eEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence            0 0011111         12455677778877654    467889999999999999996643

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=98.50  E-value=2.8e-06  Score=81.77  Aligned_cols=64  Identities=20%  Similarity=0.326  Sum_probs=45.6

Q ss_pred             chhHHHHHHHHHcCC-cEEEecceeeecccC-CC--eEEc---CCCc--EEecCEEEEccCCCCCchhhhcccc
Q 017664          182 SRASQIALDWLTSKK-VEVILNQSVTLNTIS-DG--LIET---SSGE--TIDTDCHFMCTGKAMASSWLRETIL  246 (368)
Q Consensus       182 ~~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~-~~--~v~~---~~g~--~i~~d~vi~a~G~~p~~~~~~~~~l  246 (368)
                      ..+.+.+.+.+++.| ++++++++|+.++.+ ++  .+.+   .+|+  ++.++.||+|+|.. ...+++..+.
T Consensus       183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~-s~~L~~~~Gi  255 (494)
T PRK05257        183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGG-ALPLLQKSGI  255 (494)
T ss_pred             HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcc-hHHHHHHcCC
Confidence            356777788888876 899999999998764 33  3443   3453  69999999999976 3445544443

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.49  E-value=5.3e-07  Score=84.54  Aligned_cols=33  Identities=30%  Similarity=0.455  Sum_probs=30.4

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCC
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKE   48 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~   48 (368)
                      .+||+||||||+|+++|..|++ |++|+|+|+.+
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            5799999999999999999985 99999999874

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.48  E-value=1.6e-07  Score=64.34  Aligned_cols=36  Identities=22%  Similarity=0.332  Sum_probs=30.8

Q ss_pred             EECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccc
Q 017664           21 VIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWAS   56 (368)
Q Consensus        21 IIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~   56 (368)
                      |||||++||++|+.|++ |.+|+|+|+++..|+....
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~   37 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARS   37 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCE
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeE
Confidence            89999999999999985 9999999999998855443

...

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.47  E-value=1.1e-06  Score=82.31  Aligned_cols=98  Identities=14%  Similarity=0.157  Sum_probs=73.4

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc---cccC---------chhHH-HHHHHHHcCCcEEEecceee
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL---EFVG---------SRASQ-IALDWLTSKKVEVILNQSVT  206 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l---~~~~---------~~~~~-~~~~~l~~~gv~i~~~~~v~  206 (368)
                      ++++|||+|+.|+.+|..|++..+..+|+++.+.+...   +.+.         .++.. ...+.+++.|++++.++.|.
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~   82 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT   82 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence            58999999999999999998766778999998876421   1110         01111 13345678899999999999


Q ss_pred             ecccCCCeEEcCCCcEEecCEEEEccCCCCCc
Q 017664          207 LNTISDGLIETSSGETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       207 ~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~  238 (368)
                      .+..++..+.+ +++++++|.+|+|||..|..
T Consensus        83 ~id~~~~~v~~-~~~~~~yd~LVlATG~~~~~  113 (377)
T PRK04965         83 DIDAEAQVVKS-QGNQWQYDKLVLATGASAFV  113 (377)
T ss_pred             EEECCCCEEEE-CCeEEeCCEEEECCCCCCCC
Confidence            88876656665 56689999999999988754

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.47  E-value=1.1e-06  Score=83.90  Aligned_cols=99  Identities=14%  Similarity=0.172  Sum_probs=71.9

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc------cccCch---hHHHH-----HHHHHcCCcEEEeccee
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL------EFVGSR---ASQIA-----LDWLTSKKVEVILNQSV  205 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l------~~~~~~---~~~~~-----~~~l~~~gv~i~~~~~v  205 (368)
                      ++|+|||+|+.|+.+|..|++..++.+|+++++++.+.      +..-..   ..+..     .+..++.|++++.+++|
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V   81 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV   81 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence            47999999999999999998766678999999986532      111000   01111     23336679999999999


Q ss_pred             eecccCCCeEEcCCC---c--EEecCEEEEccCCCCCc
Q 017664          206 TLNTISDGLIETSSG---E--TIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       206 ~~i~~~~~~v~~~~g---~--~i~~d~vi~a~G~~p~~  238 (368)
                      ..|..++..|.+.++   +  ++++|.+|+|||.+|..
T Consensus        82 ~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~  119 (438)
T PRK13512         82 IAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANS  119 (438)
T ss_pred             EEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCC
Confidence            999888776665432   2  46899999999999864

>PRK07588 hypothetical protein; Provisional

Probab=98.47  E-value=2.4e-06  Score=80.33  Aligned_cols=52  Identities=15%  Similarity=0.126  Sum_probs=40.6

Q ss_pred             hHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCC
Q 017664          184 ASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       184 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                      +...+.+.+. .++++++++++..++.+++  .+.+.+|+++++|+||-|-|...
T Consensus       105 l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S  158 (391)
T PRK07588        105 LAAAIYTAID-GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHS  158 (391)
T ss_pred             HHHHHHHhhh-cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence            3344444444 4799999999999987665  57788999999999999999754

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.47  E-value=8.4e-07  Score=84.11  Aligned_cols=37  Identities=24%  Similarity=0.354  Sum_probs=33.1

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCc
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEY   49 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~   49 (368)
                      +...+||+||||||||+++|..|++ |++|+|+|+.+.
T Consensus        15 ~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   52 (415)
T PRK07364         15 RSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA   52 (415)
T ss_pred             CccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence            4457899999999999999999985 999999999865

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.46  E-value=4.1e-06  Score=80.40  Aligned_cols=53  Identities=13%  Similarity=0.012  Sum_probs=43.0

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCCC-eEEcCCCcEEecCEEEEccCCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG-LIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      ..+...+.+.+++.|++++.++.|..++..+. .+.+++| ++.+|.||+|+|.-
T Consensus       183 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~t~~g-~v~A~~VV~Atga~  236 (460)
T TIGR03329       183 GLLVRGLRRVALELGVEIHENTPMTGLEEGQPAVVRTPDG-QVTADKVVLALNAW  236 (460)
T ss_pred             HHHHHHHHHHHHHcCCEEECCCeEEEEeeCCceEEEeCCc-EEECCEEEEccccc
Confidence            35667788889999999999999998875333 5777777 69999999999843

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=98.46  E-value=1.9e-06  Score=79.18  Aligned_cols=46  Identities=20%  Similarity=0.359  Sum_probs=40.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccceee
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLRA   59 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~~   59 (368)
                      ++..||||||+|.+||++|+.|++ |++|+|+|.++++|+.....+.
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~   51 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARA   51 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEec
Confidence            567899999999999999999986 9999999999999987665554

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=98.45  E-value=3e-06  Score=74.23  Aligned_cols=124  Identities=19%  Similarity=0.166  Sum_probs=79.6

Q ss_pred             cCchhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCCc--EEecCEEEEccCCCCCchh------hhccc--c
Q 017664          180 VGSRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSGE--TIDTDCHFMCTGKAMASSW------LRETI--L  246 (368)
Q Consensus       180 ~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~--~i~~d~vi~a~G~~p~~~~------~~~~~--l  246 (368)
                      ...++.+.+.+.++..|.-+.++.+|...+..++   .+.+.++.  .+.+|..++|+|.--..-+      +.+.-  +
T Consensus       256 lGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~l  335 (421)
T COG3075         256 LGIRLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFDL  335 (421)
T ss_pred             hhhhHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcchhhc
Confidence            3446678888999999999999999988877766   45566765  4559999999996422211      11111  1


Q ss_pred             ccccCC-----------------CCcEEeCCCeeecC----CCCeEEecccCCCCccch----HHHHHHHHHHHHHHHHH
Q 017664          247 KDSLDG-----------------RGRLMVDENLRVRG----FKNVFAIGDITDIPEIKQ----GYLAQKHALVTAKNLKK  301 (368)
Q Consensus       247 ~~~~~~-----------------~g~i~vd~~~~~~~----~~~ifa~GD~~~~~~~~~----~~~a~~~g~~aa~~i~~  301 (368)
                      ++.-++                 .=.+.+|+++|...    ..|+|+||.+.+...+..    +-.|...|..||+.|+.
T Consensus       336 di~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~egcGsGVaivta~~aa~qi~~  415 (421)
T COG3075         336 DILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAEGCGSGVAIVTALHAAEQIAE  415 (421)
T ss_pred             ccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHHhcCCcchHHHHHHHHHHHHHH
Confidence            110010                 01255666666532    579999999998765421    12567777778888876


Q ss_pred             HH
Q 017664          302 LM  303 (368)
Q Consensus       302 ~l  303 (368)
                      ..
T Consensus       416 ~~  417 (421)
T COG3075         416 RA  417 (421)
T ss_pred             Hh
Confidence            54

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.45  E-value=2.8e-06  Score=79.59  Aligned_cols=54  Identities=11%  Similarity=0.060  Sum_probs=44.4

Q ss_pred             hhHHHHHHHHHcCC-cEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCC
Q 017664          183 RASQIALDWLTSKK-VEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       183 ~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                      .+.+.+.+.+++.| ++++.+++|+.++.+++  .+.+.+|+++++|.+|.|.|...
T Consensus       107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S  163 (385)
T TIGR01988       107 VLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANS  163 (385)
T ss_pred             HHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCC
Confidence            45666777777777 99999999998876655  56778898999999999999764

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.45  E-value=9.5e-07  Score=90.07  Aligned_cols=100  Identities=15%  Similarity=0.256  Sum_probs=76.7

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhC--CCCeEEEEecCcccc------c-ccCc----hhHHHHHHHHHcCCcEEEecceee
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDF--PDKKVILVHRGPKLL------E-FVGS----RASQIALDWLTSKKVEVILNQSVT  206 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~--~~~~v~~i~~~~~~l------~-~~~~----~~~~~~~~~l~~~gv~i~~~~~v~  206 (368)
                      ++++|||+|+.|+.+|..|.++.  .+.+|+++.+.+++.      + .+..    ++.....+++++.||+++.++.|.
T Consensus         4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V~   83 (847)
T PRK14989          4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAI   83 (847)
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEEE
Confidence            58999999999999999997642  356899999887642      1 1111    112223456788999999999998


Q ss_pred             ecccCCCeEEcCCCcEEecCEEEEccCCCCCch
Q 017664          207 LNTISDGLIETSSGETIDTDCHFMCTGKAMASS  239 (368)
Q Consensus       207 ~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  239 (368)
                      .+..+...|.+.+|+++++|.+|+|||..|..+
T Consensus        84 ~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p  116 (847)
T PRK14989         84 TINRQEKVIHSSAGRTVFYDKLIMATGSYPWIP  116 (847)
T ss_pred             EEeCCCcEEEECCCcEEECCEEEECCCCCcCCC
Confidence            887766678888998999999999999987643

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=98.44  E-value=2.7e-06  Score=81.75  Aligned_cols=63  Identities=17%  Similarity=0.268  Sum_probs=45.8

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCC-C--eEE---cCCC--cEEecCEEEEccCCCCCchhhhccc
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISD-G--LIE---TSSG--ETIDTDCHFMCTGKAMASSWLRETI  245 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~--~v~---~~~g--~~i~~d~vi~a~G~~p~~~~~~~~~  245 (368)
                      ..+...+.+.+++.|++++++++|+.++.++ +  .+.   +.+|  .++++|.||+|+|... ..+....+
T Consensus       178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s-~~La~~~G  248 (483)
T TIGR01320       178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA-LPLLQKSG  248 (483)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch-HHHHHHcC
Confidence            4677888888889999999999999987643 3  333   2334  3689999999999763 34444443

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.44  E-value=7.7e-07  Score=84.50  Aligned_cols=38  Identities=18%  Similarity=0.354  Sum_probs=33.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhcCCcEEEEcCCCcee
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYFE   51 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~g~~v~lie~~~~~~   51 (368)
                      ...+||||||+|.|||+||..+++|.+|+||||.+..+
T Consensus         2 ~~~~DVvVVG~G~AGl~AA~~a~~G~~V~lleK~~~~g   39 (433)
T PRK06175          2 NLYADVLIVGSGVAGLYSALNLRKDLKILMVSKGKLNE   39 (433)
T ss_pred             CccccEEEECchHHHHHHHHHhccCCCEEEEecCCCCC
Confidence            35689999999999999999988899999999988654

>PLN02697 lycopene epsilon cyclase

Probab=98.44  E-value=5.8e-07  Score=86.70  Aligned_cols=102  Identities=22%  Similarity=0.217  Sum_probs=62.5

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccc----e-----e-----------eeeccc----ccccc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWAS----L-----R-----------AVVEPS----FAVRS   69 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~----~-----~-----------~~~~~~----~~~~~   69 (368)
                      ..+||+||||||||+++|..|++ |++|+|+|+...+..++..    +     .           ......    ....+
T Consensus       107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Y  186 (529)
T PLN02697        107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAY  186 (529)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcc
Confidence            35899999999999999999974 9999999986443221100    0     0           000000    00000


Q ss_pred             e-eeccc---------ccCceeEEEeEEEEeec--c--E-EEecCCeEEEecEEEEecCCCC
Q 017664           70 V-INHGD---------YLSNVKIVVSTAVSITD--T--E-VVTAGGQTFVYDYVVVATGHVE  116 (368)
Q Consensus        70 ~-~~~~~---------~~~~~~~~~~~~~~~~~--~--~-v~~~~g~~~~~d~lvlAtG~~~  116 (368)
                      . .....         ...++++....+..+..  .  . +.+.++..+.++.||.|+|...
T Consensus       187 g~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        187 GRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS  248 (529)
T ss_pred             cEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence            0 00000         01256777777777753  2  2 3556788899999999999875

>PRK09126 hypothetical protein; Provisional

Probab=98.43  E-value=8.3e-07  Score=83.48  Aligned_cols=34  Identities=29%  Similarity=0.450  Sum_probs=31.4

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      ++||+||||||+|+++|..|+ +|++|+|+|+.+.
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~   37 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL   37 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence            689999999999999999998 4999999999864

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.43  E-value=3.7e-06  Score=80.47  Aligned_cols=63  Identities=19%  Similarity=0.214  Sum_probs=44.7

Q ss_pred             hhHHHHHHHHH-cCCcEEEecceeeecccC-CC--eEE---cCCCc--EEecCEEEEccCCCCCchhhhcccc
Q 017664          183 RASQIALDWLT-SKKVEVILNQSVTLNTIS-DG--LIE---TSSGE--TIDTDCHFMCTGKAMASSWLRETIL  246 (368)
Q Consensus       183 ~~~~~~~~~l~-~~gv~i~~~~~v~~i~~~-~~--~v~---~~~g~--~i~~d~vi~a~G~~p~~~~~~~~~l  246 (368)
                      .+.+.+.+.+. ..|+++++++.|..++.+ ++  .+.   +.+++  ++++|.||+|+|... ..+++..+.
T Consensus       185 ~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS-~~La~~~Gi  256 (497)
T PRK13339        185 ALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGA-IPLLQKSGI  256 (497)
T ss_pred             HHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcch-HHHHHHcCC
Confidence            55667777775 459999999999988755 43  343   34453  689999999999873 445555543

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.43  E-value=5.9e-06  Score=80.88  Aligned_cols=54  Identities=11%  Similarity=0.029  Sum_probs=41.3

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEc---CCC--cEEecCEEEEccCCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIET---SSG--ETIDTDCHFMCTGKA  235 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~---~~g--~~i~~d~vi~a~G~~  235 (368)
                      ..+...+...++++|++++++++|+.+..+++   .+++   .++  .++.+|.||.|+|..
T Consensus       149 ~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~w  210 (546)
T PRK11101        149 FRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIW  210 (546)
T ss_pred             HHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChh
Confidence            35566667778899999999999999876655   3443   223  379999999999965

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.42  E-value=1e-06  Score=84.75  Aligned_cols=53  Identities=19%  Similarity=0.221  Sum_probs=40.8

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEc--CCC--cEEecCEEEEccCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIET--SSG--ETIDTDCHFMCTGK  234 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~--~~g--~~i~~d~vi~a~G~  234 (368)
                      ..+...+.+.+++.|++++++++++++..+++   .+..  .++  ..+.++.||+|+|-
T Consensus       131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg  190 (466)
T PRK08274        131 KALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGG  190 (466)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCC
Confidence            35677788888999999999999998876555   3333  333  36889999999984

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.42  E-value=9.4e-07  Score=83.50  Aligned_cols=35  Identities=26%  Similarity=0.489  Sum_probs=31.5

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCC
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEK   47 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~   47 (368)
                      |+..+||+||||||+|+++|..|++ |++|+|+|+.
T Consensus         1 ~m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~   36 (405)
T PRK08850          1 MMQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ   36 (405)
T ss_pred             CCCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence            3457899999999999999999985 9999999986

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=98.42  E-value=1.2e-05  Score=71.01  Aligned_cols=43  Identities=23%  Similarity=0.397  Sum_probs=38.2

Q ss_pred             CCCcEEEECCChHHHHHHHHhhcCCcEEEEcCCCceeeeccce
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYFEITWASL   57 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~g~~v~lie~~~~~~~~~~~~   57 (368)
                      ..++|.|||+|.+||+||+.|.+.++|||+|.+.++|+.-..+
T Consensus         7 ~r~~IAVIGsGisGLSAA~~Ls~rhdVTLfEA~~rlGGha~Tv   49 (447)
T COG2907           7 PRRKIAVIGSGISGLSAAWLLSRRHDVTLFEADRRLGGHANTV   49 (447)
T ss_pred             CCcceEEEcccchhhhhHHhhhcccceEEEeccccccCcccee
Confidence            3578999999999999999999999999999999988665444

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.42  E-value=2e-06  Score=86.32  Aligned_cols=54  Identities=9%  Similarity=0.163  Sum_probs=44.2

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                      ..+...+.+.+++ |++++.++.|+.++.+++  .+.+.+|+.+.+|.||+|+|...
T Consensus       408 ~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s  463 (662)
T PRK01747        408 AELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDA  463 (662)
T ss_pred             HHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCc
Confidence            3667778888888 999999999998876555  56777787788999999999763

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.41  E-value=1.9e-07  Score=77.12  Aligned_cols=37  Identities=24%  Similarity=0.408  Sum_probs=33.8

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceee
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEI   52 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~   52 (368)
                      ..||+||||||+||+||++|+ +|.+|+|+|++-.+|+
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GG   67 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGG   67 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCC
Confidence            569999999999999999998 5999999999988763

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.41  E-value=5.3e-06  Score=81.51  Aligned_cols=40  Identities=33%  Similarity=0.434  Sum_probs=34.7

Q ss_pred             cCCCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCce
Q 017664           11 AGLVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYF   50 (368)
Q Consensus        11 ~~~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~   50 (368)
                      +.++.++||+||||||+|+++|..|++ |.+|+|||+.+..
T Consensus        18 ~~~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~   58 (547)
T PRK08132         18 ADDPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL   58 (547)
T ss_pred             CCCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            444567899999999999999999985 9999999999754

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.41  E-value=7e-06  Score=77.84  Aligned_cols=52  Identities=19%  Similarity=0.167  Sum_probs=42.2

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCCC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      .+...+.+.+++.|+++++++.|+.++.+++   .+.+.++ ++.+|.||+|+|..
T Consensus       202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~  256 (416)
T PRK00711        202 LFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSY  256 (416)
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcc
Confidence            5566777888899999999999998876655   3556655 79999999999975

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.40  E-value=2.6e-06  Score=81.39  Aligned_cols=57  Identities=14%  Similarity=0.081  Sum_probs=42.2

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCC-C---eEE--cCCCc--EEecCEEEEccCC-CCCc
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISD-G---LIE--TSSGE--TIDTDCHFMCTGK-AMAS  238 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~---~v~--~~~g~--~i~~d~vi~a~G~-~p~~  238 (368)
                      ..+...+.+.+++.|++++++++++++..++ +   .++  ..+++  .+.++.||+|+|- ..|.
T Consensus       130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~  195 (439)
T TIGR01813       130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNK  195 (439)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCH
Confidence            4577788888999999999999999987653 3   233  34443  4789999999994 3433

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.39  E-value=1.1e-06  Score=89.40  Aligned_cols=98  Identities=15%  Similarity=0.184  Sum_probs=76.0

Q ss_pred             EEEEcCchhHHHHHHHHhhhC-CCCeEEEEecCcccc------cc-cC-----chhHHHHHHHHHcCCcEEEecceeeec
Q 017664          142 VLIVGGGPTGVELAGEIAVDF-PDKKVILVHRGPKLL------EF-VG-----SRASQIALDWLTSKKVEVILNQSVTLN  208 (368)
Q Consensus       142 v~VvG~g~~~~e~a~~l~~~~-~~~~v~~i~~~~~~l------~~-~~-----~~~~~~~~~~l~~~gv~i~~~~~v~~i  208 (368)
                      ++|||+|+.|+.+|..+.+.. .+.+|+++++.+++.      +. +.     .++.....+++++.||++++++.|..+
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I   80 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI   80 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence            589999999999999987643 356999999887642      11 11     111122346788899999999999998


Q ss_pred             ccCCCeEEcCCCcEEecCEEEEccCCCCCch
Q 017664          209 TISDGLIETSSGETIDTDCHFMCTGKAMASS  239 (368)
Q Consensus       209 ~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  239 (368)
                      ..++..|.+.+|+++++|.+|+|||..|..+
T Consensus        81 d~~~k~V~~~~g~~~~yD~LVlATGs~p~~p  111 (785)
T TIGR02374        81 DTDQKQVITDAGRTLSYDKLILATGSYPFIL  111 (785)
T ss_pred             ECCCCEEEECCCcEeeCCEEEECCCCCcCCC
Confidence            8777788899999999999999999987643

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.39  E-value=1.9e-06  Score=80.04  Aligned_cols=98  Identities=17%  Similarity=0.300  Sum_probs=61.3

Q ss_pred             cEEEECCChHHHHHHHHhhc---CCcEEEEcCCCceeee--ccceeeeec------------ccccc----------c--
Q 017664           18 KVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYFEIT--WASLRAVVE------------PSFAV----------R--   68 (368)
Q Consensus        18 ~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~~~~~--~~~~~~~~~------------~~~~~----------~--   68 (368)
                      ||+|||||+||+++|..|++   |.+|+|+|+.+..+..  |........            .....          .  
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~   80 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK   80 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence            79999999999999999973   8999999998855431  111110000            00000          0  


Q ss_pred             --c-eeecccc--------cCceeEEEeEEEEeeccEEEecCCeEEEecEEEEecCCCC
Q 017664           69 --S-VINHGDY--------LSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVE  116 (368)
Q Consensus        69 --~-~~~~~~~--------~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~  116 (368)
                        + .....++        -.+ -+....+..++++.+.+.+|.++++|.||-|.|..+
T Consensus        81 ~~Y~~I~r~~f~~~l~~~l~~~-i~~~~~V~~v~~~~v~l~dg~~~~A~~VI~A~G~~s  138 (370)
T TIGR01789        81 TAYRSMTSTRFHEGLLQAFPEG-VILGRKAVGLDADGVDLAPGTRINARSVIDCRGFKP  138 (370)
T ss_pred             CCceEEEHHHHHHHHHHhhccc-EEecCEEEEEeCCEEEECCCCEEEeeEEEECCCCCC
Confidence              0 0000000        012 223456777777777778899999999999999874

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.37  E-value=3e-07  Score=76.39  Aligned_cols=38  Identities=24%  Similarity=0.243  Sum_probs=30.5

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceee
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEI   52 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~   52 (368)
                      .++||+||||||+||+||++|++ |++|+++|++..+|.
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GG   54 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGG   54 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BT
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence            46899999999999999999985 999999999987763

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.36  E-value=1.3e-06  Score=81.92  Aligned_cols=31  Identities=29%  Similarity=0.474  Sum_probs=29.3

Q ss_pred             CcEEEECCChHHHHHHHHhhc-CCcEEEEcCC
Q 017664           17 KKVVVIGGGVGGSLLAYHIQS-FADVVLIDEK   47 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~   47 (368)
                      +||+||||||||+++|+.|++ |++|+|+|+.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            699999999999999999985 9999999997

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.36  E-value=9.2e-07  Score=82.97  Aligned_cols=53  Identities=17%  Similarity=0.045  Sum_probs=42.0

Q ss_pred             chhHHHHHHHHHcCC-cEEEecceeeecccC-CC-eEEcCCCcEEecCEEEEccCCC
Q 017664          182 SRASQIALDWLTSKK-VEVILNQSVTLNTIS-DG-LIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       182 ~~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~-~~-~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      ..+...+.+.+++.| ..+..++.+..++.+ .. .+.+.+|+ +.+|.||+|+|..
T Consensus       156 ~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~  211 (387)
T COG0665         156 RLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAW  211 (387)
T ss_pred             HHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchH
Confidence            466778888899999 556668888877764 33 78888886 9999999999965

>PRK07236 hypothetical protein; Provisional

Probab=98.36  E-value=2.4e-06  Score=80.22  Aligned_cols=36  Identities=28%  Similarity=0.423  Sum_probs=32.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCc
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEY   49 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~   49 (368)
                      ++.++|+|||||++|+++|..|++ |.+|+|+|+.+.
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT   40 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            446899999999999999999985 999999999864

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.35  E-value=1.6e-06  Score=81.56  Aligned_cols=33  Identities=30%  Similarity=0.558  Sum_probs=30.4

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc----CCcEEEEcCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS----FADVVLIDEK   47 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~----g~~v~lie~~   47 (368)
                      +++||+||||||||+++|..|++    |.+|+|+|+.
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            56899999999999999999974    9999999994

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.35  E-value=3e-06  Score=80.45  Aligned_cols=98  Identities=9%  Similarity=0.083  Sum_probs=72.4

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc--ccc---------CchhHHHHHHHHHcCCcEEEecceee
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL--EFV---------GSRASQIALDWLTSKKVEVILNQSVT  206 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l--~~~---------~~~~~~~~~~~l~~~gv~i~~~~~v~  206 (368)
                      ..++++|||+|+.|+.+|..|.  ..+.+|++|++++.+.  +.+         ...+...+.+.+++.+++++. .+|.
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~--~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~-~~V~   85 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLD--PKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLR-AVVY   85 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhC--cCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEE-EEEE
Confidence            3578999999999999998885  2467899999887642  111         112333355667778898875 5788


Q ss_pred             ecccCCCeEEc----------CCCcEEecCEEEEccCCCCCc
Q 017664          207 LNTISDGLIET----------SSGETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       207 ~i~~~~~~v~~----------~~g~~i~~d~vi~a~G~~p~~  238 (368)
                      .|+.++..+.+          .+|+++++|.+|+|||..|..
T Consensus        86 ~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~  127 (424)
T PTZ00318         86 DVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNT  127 (424)
T ss_pred             EEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCC
Confidence            88877776665          467789999999999998754

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.35  E-value=2.1e-06  Score=72.81  Aligned_cols=90  Identities=21%  Similarity=0.339  Sum_probs=62.2

Q ss_pred             EEEcCchhHHHHHHHHhhhCCCCe-EEEEecCcccc--------------cc-c--------------------------
Q 017664          143 LIVGGGPTGVELAGEIAVDFPDKK-VILVHRGPKLL--------------EF-V--------------------------  180 (368)
Q Consensus       143 ~VvG~g~~~~e~a~~l~~~~~~~~-v~~i~~~~~~l--------------~~-~--------------------------  180 (368)
                      +|||+|++|+-+|..|.++  +.+ +.++++++.+.              +. +                          
T Consensus         1 ~IIGaG~aGl~~a~~l~~~--g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLER--GIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDF   78 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHT--T---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSS
T ss_pred             CEECcCHHHHHHHHHHHhC--CCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCccc
Confidence            6999999999999999864  666 99999874321              00 0                          


Q ss_pred             --CchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCC
Q 017664          181 --GSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGK  234 (368)
Q Consensus       181 --~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~  234 (368)
                        .+++.+++++.+++.+++++++++|++++.+++  .+.+.+++++.+|.||+|||.
T Consensus        79 ~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~  136 (203)
T PF13738_consen   79 PSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGH  136 (203)
T ss_dssp             EBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---S
T ss_pred             CCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeec
Confidence              012335566778889999999999999988765  788999888999999999996

...

>PRK07045 putative monooxygenase; Reviewed

Probab=98.33  E-value=2.2e-06  Score=80.55  Aligned_cols=37  Identities=19%  Similarity=0.258  Sum_probs=32.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCce
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYF   50 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~   50 (368)
                      +.++||+||||||+|+++|..|+ +|++|+|+|+.+..
T Consensus         3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07045          3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN   40 (388)
T ss_pred             CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence            35689999999999999999998 49999999988753

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.31  E-value=5e-06  Score=80.91  Aligned_cols=98  Identities=22%  Similarity=0.330  Sum_probs=76.8

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC--cccc-----------c-ccCchhHHHHHHHHHcCCcEEEecc
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRG--PKLL-----------E-FVGSRASQIALDWLTSKKVEVILNQ  203 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~--~~~l-----------~-~~~~~~~~~~~~~l~~~gv~i~~~~  203 (368)
                      ...+++|||+|+.|+.+|..+.+  .+.+|+++...  ..+.           + ...+++.+.+.+.+++.|++++.++
T Consensus       211 ~~~dVvIIGgGpAGl~AA~~la~--~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~  288 (515)
T TIGR03140       211 DPYDVLVVGGGPAGAAAAIYAAR--KGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQ  288 (515)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCC
Confidence            45789999999999999999985  58899988642  1110           0 1234566777888899999999999


Q ss_pred             eeeecccCCC--eEEcCCCcEEecCEEEEccCCCCC
Q 017664          204 SVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMA  237 (368)
Q Consensus       204 ~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~  237 (368)
                      +|..+..+++  .+.+.+|+.+.+|.+|+|+|..|.
T Consensus       289 ~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~  324 (515)
T TIGR03140       289 RAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWR  324 (515)
T ss_pred             EEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcC
Confidence            9998876554  667778889999999999998764

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.31  E-value=3.6e-06  Score=77.71  Aligned_cols=99  Identities=21%  Similarity=0.229  Sum_probs=78.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc--c---------cCchhHHHHHHHHHcCC-cEEEecceee
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE--F---------VGSRASQIALDWLTSKK-VEVILNQSVT  206 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~--~---------~~~~~~~~~~~~l~~~g-v~i~~~~~v~  206 (368)
                      .+++||+|||+.|+.++..|.+..++.+|+++++.+.++-  .         -+.++...+++.+++.+ ++++.+ +|+
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~   81 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EVT   81 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEE-EEE
Confidence            5789999999999999999986422578999999886531  1         12344555778888555 998865 578


Q ss_pred             ecccCCCeEEcCCCcEEecCEEEEccCCCCCc
Q 017664          207 LNTISDGLIETSSGETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       207 ~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~  238 (368)
                      .|..++..|.+.++..+++|.+|+++|..++.
T Consensus        82 ~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~  113 (405)
T COG1252          82 DIDRDAKKVTLADLGEISYDYLVVALGSETNY  113 (405)
T ss_pred             EEcccCCEEEeCCCccccccEEEEecCCcCCc
Confidence            88888889999997789999999999998765

>PLN02612 phytoene desaturase

Probab=98.30  E-value=9.1e-06  Score=79.84  Aligned_cols=52  Identities=21%  Similarity=0.216  Sum_probs=43.9

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCCC----eEEcCCCcEEecCEEEEccC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG----LIETSSGETIDTDCHFMCTG  233 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~----~v~~~~g~~i~~d~vi~a~G  233 (368)
                      ..+.+.+.+.+++.|.+++++++|++|+.+++    .+++.+|+++++|.||+++.
T Consensus       308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p  363 (567)
T PLN02612        308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATP  363 (567)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCC
Confidence            35678888889899999999999999987533    36778898999999999975

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.30  E-value=5.3e-06  Score=80.79  Aligned_cols=97  Identities=20%  Similarity=0.266  Sum_probs=76.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc--cc--------cc----ccCchhHHHHHHHHHcCCcEEEecce
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP--KL--------LE----FVGSRASQIALDWLTSKKVEVILNQS  204 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~--~~--------l~----~~~~~~~~~~~~~l~~~gv~i~~~~~  204 (368)
                      ..+++|||+|+.|+.+|..+.+  .+.++.++....  ..        .+    ...+++.+.+.+++++.|++++.+++
T Consensus       211 ~~dvvIIGgGpaGl~aA~~la~--~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~  288 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYAAR--KGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQR  288 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCE
Confidence            4689999999999999999985  588888886531  11        01    12345677788889999999999999


Q ss_pred             eeecccCCC--eEEcCCCcEEecCEEEEccCCCCC
Q 017664          205 VTLNTISDG--LIETSSGETIDTDCHFMCTGKAMA  237 (368)
Q Consensus       205 v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~  237 (368)
                      +..+...++  .+.+.+|+++.+|.+|+|+|..|.
T Consensus       289 V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r  323 (517)
T PRK15317        289 ASKLEPAAGLIEVELANGAVLKAKTVILATGARWR  323 (517)
T ss_pred             EEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcC
Confidence            998877644  677788889999999999998764

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.29  E-value=6.4e-06  Score=77.69  Aligned_cols=53  Identities=19%  Similarity=0.202  Sum_probs=39.4

Q ss_pred             hhHHHHHHHHHc-CCcEEEecceeeecccCCC--eEEc---CCCcEEecCEEEEccCCC
Q 017664          183 RASQIALDWLTS-KKVEVILNQSVTLNTISDG--LIET---SSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       183 ~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~--~v~~---~~g~~i~~d~vi~a~G~~  235 (368)
                      .+.+.+.+.+.+ .+++++.++++..++.+++  .+.+   .+++++++|+||-|-|..
T Consensus       108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~  166 (400)
T PRK06475        108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVW  166 (400)
T ss_pred             HHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCcc
Confidence            455666666655 4899999999998877655  3443   344689999999999975

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.29  E-value=2.4e-06  Score=80.05  Aligned_cols=32  Identities=28%  Similarity=0.507  Sum_probs=29.5

Q ss_pred             cEEEECCChHHHHHHHHhhc-C-CcEEEEcCCCc
Q 017664           18 KVVVIGGGVGGSLLAYHIQS-F-ADVVLIDEKEY   49 (368)
Q Consensus        18 ~vvIIGaG~aGl~aA~~L~~-g-~~v~lie~~~~   49 (368)
                      ||+||||||+|+++|..|++ | ++|+|+|+.+.
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~   34 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSP   34 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence            79999999999999999985 9 99999999864

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.27  E-value=9.4e-07  Score=84.51  Aligned_cols=47  Identities=28%  Similarity=0.347  Sum_probs=40.2

Q ss_pred             cCCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccce
Q 017664           11 AGLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASL   57 (368)
Q Consensus        11 ~~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~   57 (368)
                      +...++++|||||||+|||+||+.|. .|++|+|+|..+..|+.....
T Consensus        10 ~~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~   57 (501)
T KOG0029|consen   10 PEAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTF   57 (501)
T ss_pred             ccccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEE
Confidence            34556789999999999999999998 499999999999998665443

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.27  E-value=2.6e-06  Score=69.01  Aligned_cols=35  Identities=49%  Similarity=0.593  Sum_probs=29.2

Q ss_pred             eeEEEeEEEEeecc----EEEecCCeEEEecEEEEecCC
Q 017664           80 VKIVVSTAVSITDT----EVVTAGGQTFVYDYVVVATGH  114 (368)
Q Consensus        80 ~~~~~~~~~~~~~~----~v~~~~g~~~~~d~lvlAtG~  114 (368)
                      ++++..+++.++..    .+.+.+|..+.+|+||+|||.
T Consensus       117 v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  117 VRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             EEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence            45677888888754    678889999999999999996

>PRK05868 hypothetical protein; Validated

Probab=98.25  E-value=5.2e-06  Score=77.40  Aligned_cols=34  Identities=29%  Similarity=0.393  Sum_probs=30.9

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      ++||+|||||++|+++|..|+ +|++|+|+|+.+.
T Consensus         1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~   35 (372)
T PRK05868          1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG   35 (372)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence            358999999999999999997 5999999999875

>PRK06753 hypothetical protein; Provisional

Probab=98.24  E-value=3.6e-06  Score=78.63  Aligned_cols=33  Identities=30%  Similarity=0.497  Sum_probs=30.4

Q ss_pred             CcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCc
Q 017664           17 KKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEY   49 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~   49 (368)
                      .||+||||||+|+++|..|++ |++|+|+|+.+.
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~   34 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES   34 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            379999999999999999984 999999999975

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.22  E-value=1.9e-06  Score=82.14  Aligned_cols=53  Identities=25%  Similarity=0.342  Sum_probs=38.5

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccC-CC---eEEcCCCcEEecCEEEEccCCCC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTIS-DG---LIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~-~~---~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                      .+.+.+.+..++.||+++.++ |..+..+ ++   .|++++|+++++|++|=|+|++.
T Consensus       155 ~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s  211 (454)
T PF04820_consen  155 KFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS  211 (454)
T ss_dssp             HHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred             HHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence            456667788889999999886 5555444 33   68889999999999999999863

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK06996 hypothetical protein; Provisional

Probab=98.21  E-value=1.9e-05  Score=74.38  Aligned_cols=52  Identities=6%  Similarity=0.021  Sum_probs=41.7

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCC---cEEecCEEEEccCC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSG---ETIDTDCHFMCTGK  234 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g---~~i~~d~vi~a~G~  234 (368)
                      .+.+.+.+.+++.|++++.++++..++.+.+  .+.+.++   +++.+|++|-|-|.
T Consensus       116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~  172 (398)
T PRK06996        116 SLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGG  172 (398)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCC
Confidence            5667788888889999999999988866554  5555544   58999999999995

>PRK07208 hypothetical protein; Provisional

Probab=98.19  E-value=1.7e-06  Score=83.58  Aligned_cols=42  Identities=26%  Similarity=0.341  Sum_probs=38.1

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeec
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITW   54 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~   54 (368)
                      |++++||+|||||++||+||+.|++ |++|+|+|+++.+|+..
T Consensus         1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~   43 (479)
T PRK07208          1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGIS   43 (479)
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence            5778899999999999999999984 99999999999988654

>PLN02985 squalene monooxygenase

Probab=98.14  E-value=1.1e-05  Score=78.32  Aligned_cols=36  Identities=33%  Similarity=0.523  Sum_probs=32.0

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCC
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKE   48 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~   48 (368)
                      ....+||+|||||++|+++|..|++ |.+|+|+|+..
T Consensus        40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~   76 (514)
T PLN02985         40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL   76 (514)
T ss_pred             cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence            3446899999999999999999985 99999999875

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.14  E-value=1.2e-05  Score=78.86  Aligned_cols=36  Identities=22%  Similarity=0.308  Sum_probs=32.8

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCc
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEY   49 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~   49 (368)
                      +..+||+||||||+|+++|..|++ |.+|+|+|+.+.
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~   44 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPT   44 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            567899999999999999999985 999999999974

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.12  E-value=3.3e-06  Score=80.43  Aligned_cols=35  Identities=34%  Similarity=0.441  Sum_probs=31.6

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEY   49 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~   49 (368)
                      .++||+||||||||+++|..|++ |++|+|+|+...
T Consensus        38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~   73 (450)
T PLN00093         38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD   73 (450)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            46899999999999999999984 999999998853

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.11  E-value=3.8e-06  Score=71.05  Aligned_cols=97  Identities=30%  Similarity=0.438  Sum_probs=69.8

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---cc-----------CchhH--H--HHHHHHHcCCcEEEec
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE---FV-----------GSRAS--Q--IALDWLTSKKVEVILN  202 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~---~~-----------~~~~~--~--~~~~~l~~~gv~i~~~  202 (368)
                      +|+|||+|+.|+.+|..|.+  .+.+++++++.+....   ..           .....  .  .+.+.+...+++++.+
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~--~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   78 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELAR--PGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLN   78 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHH--TTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHH
T ss_pred             CEEEEecHHHHHHHHHHHhc--CCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeec
Confidence            58999999999999999994  6899999976653110   00           00011  1  4445557789999989


Q ss_pred             ceeeecccCCCe-------E---EcCCCcEEecCEEEEccCCCCCch
Q 017664          203 QSVTLNTISDGL-------I---ETSSGETIDTDCHFMCTGKAMASS  239 (368)
Q Consensus       203 ~~v~~i~~~~~~-------v---~~~~g~~i~~d~vi~a~G~~p~~~  239 (368)
                      +++.++......       +   ...++.++.+|.+|+|+|..|..+
T Consensus        79 ~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~  125 (201)
T PF07992_consen   79 AKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTP  125 (201)
T ss_dssp             HTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEE
T ss_pred             cccccccccccccccCcccceeeccCCceEecCCeeeecCcccccee
Confidence            998888766552       1   345667899999999999887654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=98.10  E-value=5.3e-05  Score=69.98  Aligned_cols=45  Identities=22%  Similarity=0.434  Sum_probs=37.2

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-c-CCcEEEEcCCCceeeeccce
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-S-FADVVLIDEKEYFEITWASL   57 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~-g~~v~lie~~~~~~~~~~~~   57 (368)
                      +....+|||||||.|||+||.+|- . ..+++|+|..+.+|+.....
T Consensus        18 ~~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti   64 (498)
T KOG0685|consen   18 ARGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTI   64 (498)
T ss_pred             ccCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeE
Confidence            334678999999999999999986 4 67999999999998665443

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.09  E-value=5.5e-05  Score=72.30  Aligned_cols=100  Identities=20%  Similarity=0.296  Sum_probs=71.7

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc----------------------------------------
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL----------------------------------------  177 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l----------------------------------------  177 (368)
                      ..++|+|||+|++|+-+|..+.+  .+.+|+++++++.+.                                        
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~--~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m   86 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRR--EGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECM   86 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHh--cCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhc
Confidence            36899999999999999999985  477888888764221                                        


Q ss_pred             -----cccC---------------chhHHHHHHHHHcCCcE--EEecceeeecccCCC--eEEcCCC--c--EEecCEEE
Q 017664          178 -----EFVG---------------SRASQIALDWLTSKKVE--VILNQSVTLNTISDG--LIETSSG--E--TIDTDCHF  229 (368)
Q Consensus       178 -----~~~~---------------~~~~~~~~~~l~~~gv~--i~~~~~v~~i~~~~~--~v~~~~g--~--~i~~d~vi  229 (368)
                           |..+               .++.+++++..+..|+.  ++++++|..++..++  .|.+.++  .  +..+|.||
T Consensus        87 ~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VI  166 (461)
T PLN02172         87 GYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVV  166 (461)
T ss_pred             cCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEE
Confidence                 0000               23455666777788888  889999999987655  5555432  2  46799999


Q ss_pred             EccC--CCCCch
Q 017664          230 MCTG--KAMASS  239 (368)
Q Consensus       230 ~a~G--~~p~~~  239 (368)
                      +|+|  ..|..+
T Consensus       167 vAtG~~~~P~~P  178 (461)
T PLN02172        167 VCNGHYTEPNVA  178 (461)
T ss_pred             EeccCCCCCcCC
Confidence            9999  455543

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.08  E-value=1.3e-05  Score=75.84  Aligned_cols=99  Identities=20%  Similarity=0.254  Sum_probs=65.7

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeec
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITD   92 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   92 (368)
                      .+.+++|||||+-|+-.|..+++ |.+|||+|+.+.+-.       ..+++..........+  .++.+... .+..+..
T Consensus       172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp-------~~D~ei~~~~~~~l~~--~gv~i~~~~~v~~~~~  242 (454)
T COG1249         172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP-------GEDPEISKELTKQLEK--GGVKILLNTKVTAVEK  242 (454)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC-------cCCHHHHHHHHHHHHh--CCeEEEccceEEEEEe
Confidence            45689999999999999998885 999999999987642       1122211111111111  24555444 3333332


Q ss_pred             c----EEEecCCe--EEEecEEEEecCCCCCCCCch
Q 017664           93 T----EVVTAGGQ--TFVYDYVVVATGHVESVPKSR  122 (368)
Q Consensus        93 ~----~v~~~~g~--~~~~d~lvlAtG~~~~~p~~~  122 (368)
                      .    .+.++++.  .+++|++++|+|.+|+.+++.
T Consensus       243 ~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~Lg  278 (454)
T COG1249         243 KDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLG  278 (454)
T ss_pred             cCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCC
Confidence            1    45566665  688999999999999998754

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.06  E-value=4.3e-06  Score=79.44  Aligned_cols=63  Identities=16%  Similarity=0.132  Sum_probs=46.7

Q ss_pred             CchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCC---Cc--EEecCEEEEccCCCCCchhhhcc
Q 017664          181 GSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSS---GE--TIDTDCHFMCTGKAMASSWLRET  244 (368)
Q Consensus       181 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~---g~--~i~~d~vi~a~G~~p~~~~~~~~  244 (368)
                      +..+.........++|-++.+.++|+.+..+++  .|+..|   |+  ++.++.||.|+|.-. -+++...
T Consensus       163 daRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~-d~i~~~~  232 (532)
T COG0578         163 DARLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWV-DEILEMA  232 (532)
T ss_pred             hHHHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccH-HHHHHhh
Confidence            346666777788899999999999999988877  555544   32  688999999999763 3344433

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=98.06  E-value=1.8e-05  Score=72.95  Aligned_cols=100  Identities=25%  Similarity=0.338  Sum_probs=78.3

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc----------ccCchhHHHHHHHHHcCCcEEEecceeee
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE----------FVGSRASQIALDWLTSKKVEVILNQSVTL  207 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~----------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~  207 (368)
                      ..++++|+|+|+.|.-++..+.+..+-..++++.+...+..          .....+.....++.++.||+++.++.|++
T Consensus        73 ~ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~  152 (478)
T KOG1336|consen   73 AARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVK  152 (478)
T ss_pred             ccceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeeccccccccChhhHhhcCceEEEcceeEE
Confidence            47889999999998777777776555567888876543211          11233444456788999999999999999


Q ss_pred             cccCCCeEEcCCCcEEecCEEEEccCCCCC
Q 017664          208 NTISDGLIETSSGETIDTDCHFMCTGKAMA  237 (368)
Q Consensus       208 i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~  237 (368)
                      +..++..+.+.+|+.+++|.+++|||..|.
T Consensus       153 ~D~~~K~l~~~~Ge~~kys~LilATGs~~~  182 (478)
T KOG1336|consen  153 ADLASKTLVLGNGETLKYSKLIIATGSSAK  182 (478)
T ss_pred             eeccccEEEeCCCceeecceEEEeecCccc
Confidence            998888999999999999999999999543

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.05  E-value=2.3e-05  Score=77.28  Aligned_cols=53  Identities=13%  Similarity=0.120  Sum_probs=40.8

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCCC---eE---EcCCCc--EEecCEEEEccCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG---LI---ETSSGE--TIDTDCHFMCTGK  234 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v---~~~~g~--~i~~d~vi~a~G~  234 (368)
                      ..+...+.+.+++.||++++++.+..+..+++   ++   ...+|+  .+.++.||+|||-
T Consensus       135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG  195 (575)
T PRK05945        135 HAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGG  195 (575)
T ss_pred             HHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCC
Confidence            35677788888889999999999988765555   22   334564  5889999999995

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.04  E-value=5.1e-06  Score=70.94  Aligned_cols=36  Identities=17%  Similarity=0.373  Sum_probs=32.7

Q ss_pred             CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceee
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEI   52 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~   52 (368)
                      .+|+|||+|+||++||+.|+ .|.+|+|+||+.-.|+
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGG   38 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGG   38 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCccc
Confidence            57999999999999999999 5999999999987654

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.04  E-value=1.7e-05  Score=81.85  Aligned_cols=90  Identities=17%  Similarity=0.071  Sum_probs=70.7

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------ccCchhHHHHHHHHHcCCcEEEecceeeec
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE---------FVGSRASQIALDWLTSKKVEVILNQSVTLN  208 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~---------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  208 (368)
                      .+++|+|||+|++|+.+|..|.+  .+.+|+++++.+.+..         ..+.++.+...+.+++.||+|++++.+-  
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar--~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG--  380 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAV--EGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG--  380 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec--
Confidence            47999999999999999999995  5899999998765322         2345566777788999999999998652  


Q ss_pred             ccCCCeEEcCCCcEEecCEEEEccCCC
Q 017664          209 TISDGLIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       209 ~~~~~~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                          ..+.+++.....+|.||+|||..
T Consensus       381 ----~dit~~~l~~~~yDAV~LAtGA~  403 (944)
T PRK12779        381 ----KTATLEDLKAAGFWKIFVGTGAG  403 (944)
T ss_pred             ----cEEeHHHhccccCCEEEEeCCCC
Confidence                14555555556799999999984

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=98.03  E-value=2.7e-05  Score=67.97  Aligned_cols=51  Identities=12%  Similarity=0.014  Sum_probs=39.1

Q ss_pred             HHHHHHHHcCCcEEEecceeeecccCCC-------eEEcCCCcEEecCEEEEccCCCC
Q 017664          186 QIALDWLTSKKVEVILNQSVTLNTISDG-------LIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       186 ~~~~~~l~~~gv~i~~~~~v~~i~~~~~-------~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                      ..+.+.++..|-.++++.++..+..++.       .+.-..++++++..++-|+|...
T Consensus       200 ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~s  257 (453)
T KOG2665|consen  200 LSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQS  257 (453)
T ss_pred             HHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccH
Confidence            3344558889999999999998877654       33344468999999999999874

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.03  E-value=4.6e-05  Score=75.78  Aligned_cols=35  Identities=26%  Similarity=0.232  Sum_probs=31.5

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCce
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYF   50 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~   50 (368)
                      .+||||||||.|||+||..++ .|.+|+||||....
T Consensus         8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~   43 (626)
T PRK07803          8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFG   43 (626)
T ss_pred             eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence            579999999999999999987 59999999998643

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.03  E-value=2e-05  Score=72.95  Aligned_cols=81  Identities=16%  Similarity=0.201  Sum_probs=56.7

Q ss_pred             hhHHHHHHHHHcC-CcEEEecceeeecccCCC---eEEc-----CCCcEEecCEEEEccCCCCCchhhhccccccccCCC
Q 017664          183 RASQIALDWLTSK-KVEVILNQSVTLNTISDG---LIET-----SSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGR  253 (368)
Q Consensus       183 ~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~---~v~~-----~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~  253 (368)
                      .+.+.+.+.+++. |++++++++|+.++..++   .|..     .+..++.+++|++..|-. ...+++.++++....-.
T Consensus       182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~-aL~LLqksgi~e~~gyg  260 (488)
T PF06039_consen  182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGG-ALPLLQKSGIPEGKGYG  260 (488)
T ss_pred             HHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchH-hHHHHHHcCChhhcccC
Confidence            5677777778776 999999999999987654   4443     233589999999999976 56788888764323323


Q ss_pred             CcEEeCCCeee
Q 017664          254 GRLMVDENLRV  264 (368)
Q Consensus       254 g~i~vd~~~~~  264 (368)
                      |++.--.++++
T Consensus       261 gfPVsG~fl~~  271 (488)
T PF06039_consen  261 GFPVSGQFLRC  271 (488)
T ss_pred             CCcccceEEec
Confidence            44433345555

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.02  E-value=5.4e-05  Score=74.69  Aligned_cols=52  Identities=13%  Similarity=0.050  Sum_probs=39.8

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCCCe---EE---cCCCc--EEecCEEEEccCC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISDGL---IE---TSSGE--TIDTDCHFMCTGK  234 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~---v~---~~~g~--~i~~d~vi~a~G~  234 (368)
                      .+...+.+.+++.||+++.++.++.+..+++.   +.   ..+|+  .+.++.||+|||-
T Consensus       130 ~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG  189 (566)
T TIGR01812       130 ALLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGG  189 (566)
T ss_pred             HHHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCc
Confidence            45667777788889999999999988765552   22   34564  6889999999994

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.01  E-value=3.7e-05  Score=72.87  Aligned_cols=34  Identities=32%  Similarity=0.577  Sum_probs=30.2

Q ss_pred             CcEEEECCChHHHHHHHHhhc-C-CcEEEEcCCCce
Q 017664           17 KKVVVIGGGVGGSLLAYHIQS-F-ADVVLIDEKEYF   50 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~~-g-~~v~lie~~~~~   50 (368)
                      .+|+|||||++||++|..|++ | .+|+|+|+.+.+
T Consensus         1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~   36 (414)
T TIGR03219         1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF   36 (414)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence            379999999999999999985 6 599999998764

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.01  E-value=2.3e-05  Score=77.09  Aligned_cols=51  Identities=10%  Similarity=-0.022  Sum_probs=38.6

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEc---CCCc--EEecCEEEEccC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISDG---LIET---SSGE--TIDTDCHFMCTG  233 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~---~~g~--~i~~d~vi~a~G  233 (368)
                      .+...+.+.+++.||++++++.++++..+++   ++..   .+|+  .+.++.||+|||
T Consensus       137 ~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG  195 (566)
T PRK06452        137 ALLHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATG  195 (566)
T ss_pred             HHHHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCC
Confidence            4566677777788999999999998876656   3332   2343  678999999999

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.00  E-value=3.4e-05  Score=79.07  Aligned_cols=90  Identities=17%  Similarity=0.191  Sum_probs=67.2

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc-------cc--cCchhHHHHHHHHHcCCcEEEecceeeec
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL-------EF--VGSRASQIALDWLTSKKVEVILNQSVTLN  208 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l-------~~--~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  208 (368)
                      .+++|+|||+|++|+.+|..|++  .+.+|+++++.+.+.       |.  .+.+......+.+++.||++++++.+. +
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar--~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~Vd-i  614 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLAR--AGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSPD-L  614 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHH--cCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCceeE-E
Confidence            46899999999999999999985  488999999876432       21  233455555678888999999998761 2


Q ss_pred             ccCCCeEEcCCCcEEecCEEEEccCCCCC
Q 017664          209 TISDGLIETSSGETIDTDCHFMCTGKAMA  237 (368)
Q Consensus       209 ~~~~~~v~~~~g~~i~~d~vi~a~G~~p~  237 (368)
                             ..++.+...+|.||+|||..+.
T Consensus       615 -------~le~L~~~gYDaVILATGA~~~  636 (1019)
T PRK09853        615 -------TVEQLKNEGYDYVVVAIGADKN  636 (1019)
T ss_pred             -------EhhhheeccCCEEEECcCCCCC
Confidence                   2223345569999999998753

>PLN02661 Putative thiazole synthesis

Probab=98.00  E-value=0.00015  Score=65.76  Aligned_cols=164  Identities=15%  Similarity=0.092  Sum_probs=97.5

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------------------------ccCc---------
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE---------------------------FVGS---------  182 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~---------------------------~~~~---------  182 (368)
                      .-.|+|||+|.+|+-+|..+.+ .++.+|.+++++..+..                           .++.         
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~-~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~h  170 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSK-NPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKH  170 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHH-cCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecc
Confidence            4589999999999999999985 35789999998653210                           0011         


Q ss_pred             --hhHHHHHH-HHHcCCcEEEecceeeecccCCC---eEEc------CC---C-----cEEecCEEEEccCCCCCc--h-
Q 017664          183 --RASQIALD-WLTSKKVEVILNQSVTLNTISDG---LIET------SS---G-----ETIDTDCHFMCTGKAMAS--S-  239 (368)
Q Consensus       183 --~~~~~~~~-~l~~~gv~i~~~~~v~~i~~~~~---~v~~------~~---g-----~~i~~d~vi~a~G~~p~~--~-  239 (368)
                        .+...+.+ .+++.|++++.++.+..+..+++   ++..      .+   +     ..++++.||+|||.....  . 
T Consensus       171 a~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga~~  250 (357)
T PLN02661        171 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATG  250 (357)
T ss_pred             hHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcchhhh
Confidence              11122333 34457899999999888776555   3332      11   1     268999999999965321  1 


Q ss_pred             --hhhccccccccCCCC--------cEEeCCCeeecCCCCeEEecccCCC--Cccc---hHHHHHHHHHHHHHHHHHHHc
Q 017664          240 --WLRETILKDSLDGRG--------RLMVDENLRVRGFKNVFAIGDITDI--PEIK---QGYLAQKHALVTAKNLKKLMM  304 (368)
Q Consensus       240 --~~~~~~l~~~~~~~g--------~i~vd~~~~~~~~~~ifa~GD~~~~--~~~~---~~~~a~~~g~~aa~~i~~~l~  304 (368)
                        .+...++......-.        ...|+.+-+.  +|++|++|=.+..  ..+.   +--.-.-+|+.+|+-|+..|.
T Consensus       251 ~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev--~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~  328 (357)
T PLN02661        251 VKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREV--VPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALG  328 (357)
T ss_pred             hhcccccCCccCCCCccccchhhHHHHHHhccCcc--cCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHc
Confidence              111111100000001        1122333343  8999999976542  1111   222346789999999999886


Q ss_pred             C
Q 017664          305 G  305 (368)
Q Consensus       305 g  305 (368)
                      .
T Consensus       329 ~  329 (357)
T PLN02661        329 L  329 (357)
T ss_pred             c
Confidence            3

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.99  E-value=2e-05  Score=75.65  Aligned_cols=89  Identities=21%  Similarity=0.235  Sum_probs=67.8

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc-------c--ccCchhHHHHHHHHHcCCcEEEecceeeec
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL-------E--FVGSRASQIALDWLTSKKVEVILNQSVTLN  208 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l-------~--~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  208 (368)
                      .+++++|||+|+.|+.+|..|.+  .+.+|+++++.+.+.       +  ..+.++.....+.+++.|+++++++.+.. 
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~--~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~-  215 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLAR--KGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR-  215 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC-
Confidence            46899999999999999999985  478999999876542       1  13446667777888999999999987621 


Q ss_pred             ccCCCeEEcCCCcEEecCEEEEccCCC
Q 017664          209 TISDGLIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       209 ~~~~~~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                           .+.+++. .+.+|.+|+|||..
T Consensus       216 -----~v~~~~~-~~~~d~vvlAtGa~  236 (457)
T PRK11749        216 -----DITLDEL-RAGYDAVFIGTGAG  236 (457)
T ss_pred             -----ccCHHHH-HhhCCEEEEccCCC
Confidence                 1222233 37899999999985

>PLN02576 protoporphyrinogen oxidase

Probab=97.99  E-value=8.1e-06  Score=79.28  Aligned_cols=45  Identities=22%  Similarity=0.372  Sum_probs=38.3

Q ss_pred             CcCCCCCCcEEEECCChHHHHHHHHhh-c-CCcEEEEcCCCceeeec
Q 017664           10 AAGLVEKKKVVVIGGGVGGSLLAYHIQ-S-FADVVLIDEKEYFEITW   54 (368)
Q Consensus        10 ~~~~~~~~~vvIIGaG~aGl~aA~~L~-~-g~~v~lie~~~~~~~~~   54 (368)
                      .+.....+||+|||||++||+||++|+ . |.+|+|+|+++.+|+..
T Consensus         6 ~~~~~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~   52 (496)
T PLN02576          6 GSAAASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNI   52 (496)
T ss_pred             cccccCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCce
Confidence            344555679999999999999999997 4 89999999999988653

>PLN02268 probable polyamine oxidase

Probab=97.97  E-value=7.1e-06  Score=78.31  Aligned_cols=39  Identities=26%  Similarity=0.409  Sum_probs=35.2

Q ss_pred             CcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeecc
Q 017664           17 KKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWA   55 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~   55 (368)
                      ++|+|||||.|||+||+.|++ |++|+|+|+++.+|+...
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~   40 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVH   40 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceee
Confidence            479999999999999999985 999999999999987643

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.97  E-value=4.5e-06  Score=78.12  Aligned_cols=45  Identities=20%  Similarity=0.268  Sum_probs=37.7

Q ss_pred             CCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCCC
Q 017664          260 ENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRN  307 (368)
Q Consensus       260 ~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~  307 (368)
                      +.|+++..+|+|.+|-+.+...   -..|..||-+|+-|.+....+++
T Consensus       352 ~tLEtK~I~GLf~AGQINGTtG---YEEAAaQGliAGiNAal~~~~~~  396 (621)
T COG0445         352 PTLETKKIKGLFFAGQINGTTG---YEEAAAQGLIAGINAALKVQGKE  396 (621)
T ss_pred             cchhhceecceEEcccccCCch---hHHHHhhhHHHHHHHHHHhcCCC
Confidence            4688888999999999987632   24799999999999998888875

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.96  E-value=2.8e-05  Score=74.25  Aligned_cols=97  Identities=19%  Similarity=0.263  Sum_probs=62.1

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeecc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITDT   93 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   93 (368)
                      ..+++|||||+.|+.+|..|+ .|.+|+++++.+.+....       .+...........+  .+++++.. .+..++..
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~-------~~~~~~~~~~~l~~--~GI~i~~~~~V~~i~~~  227 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPRE-------EPSVAALAKQYMEE--DGITFLLNAHTTEVKND  227 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCC-------CHHHHHHHHHHHHH--cCCEEEcCCEEEEEEec
Confidence            468999999999999999987 499999999987652110       11111000000111  25665543 45555432


Q ss_pred             --E-EEecCCeEEEecEEEEecCCCCCCCCc
Q 017664           94 --E-VVTAGGQTFVYDYVVVATGHVESVPKS  121 (368)
Q Consensus        94 --~-v~~~~g~~~~~d~lvlAtG~~~~~p~~  121 (368)
                        . +...++.++++|.+++|+|..|..+..
T Consensus       228 ~~~v~v~~~g~~i~~D~viva~G~~p~~~~l  258 (438)
T PRK07251        228 GDQVLVVTEDETYRFDALLYATGRKPNTEPL  258 (438)
T ss_pred             CCEEEEEECCeEEEcCEEEEeeCCCCCcccC
Confidence              2 233456789999999999999887653

>PRK06185 hypothetical protein; Provisional

Probab=97.94  E-value=9.5e-06  Score=76.71  Aligned_cols=37  Identities=24%  Similarity=0.469  Sum_probs=32.7

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCc
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEY   49 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~   49 (368)
                      +...+||+|||||++|+++|..|++ |.+|+|+|+.+.
T Consensus         3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~   40 (407)
T PRK06185          3 EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD   40 (407)
T ss_pred             ccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            3457899999999999999999984 999999999853

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.94  E-value=3.2e-05  Score=73.92  Aligned_cols=92  Identities=16%  Similarity=0.119  Sum_probs=66.2

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc--------cc--CchhHHHHHHHHHcCCcEEEecceeee
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE--------FV--GSRASQIALDWLTSKKVEVILNQSVTL  207 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~--------~~--~~~~~~~~~~~l~~~gv~i~~~~~v~~  207 (368)
                      ..++|+|||+|++|+.+|..|.++..+.+|+++++.+.+..        ..  ...+...+.+.+++.+++++.+..+-.
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~  104 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGR  104 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECc
Confidence            46899999999999999999985456899999999876431        11  112334556677888999998776521


Q ss_pred             cccCCCeEEcCCCcEEecCEEEEccCCCC
Q 017664          208 NTISDGLIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       208 i~~~~~~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                            .+.+++- ...+|.||+|+|..+
T Consensus       105 ------dvtl~~L-~~~yDaVIlAtGa~~  126 (491)
T PLN02852        105 ------DVSLSEL-RDLYHVVVLAYGAES  126 (491)
T ss_pred             ------cccHHHH-hhhCCEEEEecCCCC
Confidence                  2233332 246999999999875

>PRK07236 hypothetical protein; Provisional

Probab=97.92  E-value=7.4e-05  Score=70.15  Aligned_cols=96  Identities=14%  Similarity=0.089  Sum_probs=68.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc------cCchhHHH-------------------------
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF------VGSRASQI-------------------------  187 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~------~~~~~~~~-------------------------  187 (368)
                      ..+|+|||+|++|+.+|..|.+  .+.+|+++++.+.....      +.+...+.                         
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~   83 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRR--AGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRD   83 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCC
Confidence            5789999999999999999985  58999999987643211      11111111                         


Q ss_pred             ------------------HHHHHHc--CCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCC
Q 017664          188 ------------------ALDWLTS--KKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       188 ------------------~~~~l~~--~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                                        +.+.|.+  .+++++.+++++.++.+++  .+.+.+|+++.+|+||.|-|...
T Consensus        84 g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S  154 (386)
T PRK07236         84 GRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRS  154 (386)
T ss_pred             CCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence                              1111211  2356889999998877655  67788999999999999988653

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.92  E-value=1.1e-05  Score=75.84  Aligned_cols=34  Identities=29%  Similarity=0.488  Sum_probs=31.2

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEY   49 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~   49 (368)
                      .+||+||||||+|+++|..|++ |++|+|+|+.+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            4799999999999999999985 999999999874

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=97.91  E-value=8.9e-06  Score=77.27  Aligned_cols=35  Identities=34%  Similarity=0.489  Sum_probs=28.2

Q ss_pred             cEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceee
Q 017664           18 KVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEI   52 (368)
Q Consensus        18 ~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~   52 (368)
                      |||||||||||++||..++ .|.+|+|||+.+.+|+
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG   36 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGG   36 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTG
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCC
Confidence            8999999999999999887 4999999999998764

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=97.91  E-value=1.1e-05  Score=77.51  Aligned_cols=39  Identities=31%  Similarity=0.543  Sum_probs=34.9

Q ss_pred             CCcEEEECCChHHHHHHHHhh-c----CCcEEEEcCCCceeeec
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-S----FADVVLIDEKEYFEITW   54 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~----g~~v~lie~~~~~~~~~   54 (368)
                      ++||+|||||++||+||++|+ +    |++|+|+|+++.+|+..
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~   45 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKI   45 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceE
Confidence            468999999999999999997 4    89999999999988653

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PLN02568 polyamine oxidase

Probab=97.90  E-value=1.4e-05  Score=77.73  Aligned_cols=43  Identities=16%  Similarity=0.338  Sum_probs=37.1

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhhc-C-----CcEEEEcCCCceeeecc
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQS-F-----ADVVLIDEKEYFEITWA   55 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~~-g-----~~v~lie~~~~~~~~~~   55 (368)
                      |++.+||+|||||++||+||++|++ |     ++|+|+|+++..|+...
T Consensus         2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~   50 (539)
T PLN02568          2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRIN   50 (539)
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEE
Confidence            4566899999999999999999984 5     89999999999886543

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=97.90  E-value=0.00011  Score=67.74  Aligned_cols=91  Identities=31%  Similarity=0.435  Sum_probs=64.5

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC-ccc-----------------------------------------c-
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRG-PKL-----------------------------------------L-  177 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~-~~~-----------------------------------------l-  177 (368)
                      .|+|||+|..|+|+|..+++  .|.+|.++... +.+                                         + 
T Consensus         1 DViVVGgG~AG~eAA~aaAr--~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN   78 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAAR--MGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLN   78 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHH--TT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEES
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccc
Confidence            48999999999999999995  58899998432 211                                         0 


Q ss_pred             ----cc-------cCc-hhHHHHHHHHHc-CCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCC
Q 017664          178 ----EF-------VGS-RASQIALDWLTS-KKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGK  234 (368)
Q Consensus       178 ----~~-------~~~-~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~  234 (368)
                          |.       .|. .+...+++.+++ .+++++ ...|..+..+++   +|.+.+|+++.+|.||+|||.
T Consensus        79 ~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   79 RSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             TTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             ccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence                10       111 233445667776 789997 467888877766   789999999999999999998

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.89  E-value=4.7e-05  Score=73.27  Aligned_cols=96  Identities=23%  Similarity=0.276  Sum_probs=61.6

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEee--
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSIT--   91 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--   91 (368)
                      ..+++|||||+.|+.+|..|++ |.+|+++|+.+.+...       ..+...........+  .+++++.. .+..++  
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-------~~~~~~~~~~~~l~~--~gi~i~~~~~v~~i~~~  240 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG-------EDAEVSKVVAKALKK--KGVKILTNTKVTAVEKN  240 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC-------CCHHHHHHHHHHHHH--cCCEEEeCCEEEEEEEe
Confidence            4689999999999999999974 9999999998764311       111111000000111  25665543 444443  


Q ss_pred             cc--EEEecCC--eEEEecEEEEecCCCCCCCC
Q 017664           92 DT--EVVTAGG--QTFVYDYVVVATGHVESVPK  120 (368)
Q Consensus        92 ~~--~v~~~~g--~~~~~d~lvlAtG~~~~~p~  120 (368)
                      .+  .+.+.++  ..+++|.+++|+|..|..+.
T Consensus       241 ~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~  273 (461)
T TIGR01350       241 DDQVVYENKGGETETLTGEKVLVAVGRKPNTEG  273 (461)
T ss_pred             CCEEEEEEeCCcEEEEEeCEEEEecCCcccCCC
Confidence            22  2344455  57999999999999998774

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.88  E-value=3.4e-05  Score=73.80  Aligned_cols=91  Identities=20%  Similarity=0.171  Sum_probs=67.3

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc-------c--ccCchhHHHHHHHHHcCCcEEEecceeeec
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL-------E--FVGSRASQIALDWLTSKKVEVILNQSVTLN  208 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l-------~--~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  208 (368)
                      ..++++|||+|+.|+.+|..|.+  .+.+|+++++.+.+.       +  ..+.++.....+.+++.||++++++.+.  
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~--~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~--  207 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAK--AGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVG--  207 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccC--
Confidence            36799999999999999999985  588999999876431       1  1344566666778889999999998542  


Q ss_pred             ccCCCeEEcCCCcEEecCEEEEccCC-CCC
Q 017664          209 TISDGLIETSSGETIDTDCHFMCTGK-AMA  237 (368)
Q Consensus       209 ~~~~~~v~~~~g~~i~~d~vi~a~G~-~p~  237 (368)
                          ..+.+.+. ..++|.+|+|||. .|.
T Consensus       208 ----~~v~~~~~-~~~yd~viiAtGa~~p~  232 (449)
T TIGR01316       208 ----KTATLEEL-FSQYDAVFIGTGAGLPK  232 (449)
T ss_pred             ----CcCCHHHH-HhhCCEEEEeCCCCCCC
Confidence                12333333 3569999999997 454

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=97.87  E-value=2.8e-05  Score=74.03  Aligned_cols=96  Identities=22%  Similarity=0.253  Sum_probs=61.7

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEE-eEEEEeecc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVV-STAVSITDT   93 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   93 (368)
                      ..+++|||+|+.|+.+|..|+ .|.+|+++++.+.+...      ...+...........+  .+++++. ..+..++..
T Consensus       137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~------~~~~~~~~~~~~~l~~--~gV~v~~~~~v~~i~~~  208 (427)
T TIGR03385       137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNK------LFDEEMNQIVEEELKK--HEINLRLNEEVDSIEGE  208 (427)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCcc------ccCHHHHHHHHHHHHH--cCCEEEeCCEEEEEecC
Confidence            468999999999999999988 48999999998764210      0011110000000111  2566653 345555533


Q ss_pred             --EEEecCCeEEEecEEEEecCCCCCCC
Q 017664           94 --EVVTAGGQTFVYDYVVVATGHVESVP  119 (368)
Q Consensus        94 --~v~~~~g~~~~~d~lvlAtG~~~~~p  119 (368)
                        .+...++..+++|.+++|+|..|..+
T Consensus       209 ~~~v~~~~g~~i~~D~vi~a~G~~p~~~  236 (427)
T TIGR03385       209 ERVKVFTSGGVYQADMVILATGIKPNSE  236 (427)
T ss_pred             CCEEEEcCCCEEEeCEEEECCCccCCHH
Confidence              23556788899999999999997653

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>TIGR02028 ChlP geranylgeranyl reductase

Probab=97.87  E-value=1.3e-05  Score=75.40  Aligned_cols=33  Identities=27%  Similarity=0.419  Sum_probs=30.1

Q ss_pred             CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      +||+||||||||++||+.|+ +|++|+|+|+...
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~   34 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPD   34 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            58999999999999999998 4999999998754

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK11445 putative oxidoreductase; Provisional

Probab=97.87  E-value=1.4e-05  Score=73.91  Aligned_cols=34  Identities=35%  Similarity=0.432  Sum_probs=30.6

Q ss_pred             CCcEEEECCChHHHHHHHHhhcCCcEEEEcCCCc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEY   49 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~g~~v~lie~~~~   49 (368)
                      ++||+||||||||+++|..|++.++|+|+|+.+.
T Consensus         1 ~~dV~IvGaGpaGl~~A~~La~~~~V~liE~~~~   34 (351)
T PRK11445          1 HYDVAIIGLGPAGSALARLLAGKMKVIAIDKKHQ   34 (351)
T ss_pred             CceEEEECCCHHHHHHHHHHhccCCEEEEECCCc
Confidence            4799999999999999999985599999998874

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.87  E-value=4.3e-05  Score=70.73  Aligned_cols=96  Identities=18%  Similarity=0.185  Sum_probs=66.6

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------cCchhHHHHHHHHHcCCcEEEecceeeec
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF---------VGSRASQIALDWLTSKKVEVILNQSVTLN  208 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~---------~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  208 (368)
                      .+++++|||+|++|+++|..|.+  .+.+|+++++.+.+...         .+.+......+.+.+.|++++.++.+..+
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~   94 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLAC--LGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCG   94 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeec
Confidence            47899999999999999999985  58899999988765321         12233344556677779999999888654


Q ss_pred             cc----CCCeE--Ec--CCCcEEecCEEEEccCCC
Q 017664          209 TI----SDGLI--ET--SSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       209 ~~----~~~~v--~~--~~g~~i~~d~vi~a~G~~  235 (368)
                      ..    +++..  ..  .++..+++|.+|+|||..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~  129 (352)
T PRK12770         95 EPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTW  129 (352)
T ss_pred             cccccccccccccccCCHHHHHhhCCEEEEEeCCC
Confidence            32    11111  11  111247899999999983

>PLN02463 lycopene beta cyclase

Probab=97.87  E-value=0.00011  Score=70.01  Aligned_cols=94  Identities=18%  Similarity=0.287  Sum_probs=69.3

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc-cc--------c------------------------------
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL-EF--------V------------------------------  180 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l-~~--------~------------------------------  180 (368)
                      -.|+|||+|++|+-+|..+.+  .+.+|.++++.+... +.        +                              
T Consensus        29 ~DVvIVGaGpAGLalA~~La~--~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~  106 (447)
T PLN02463         29 VDLVVVGGGPAGLAVAQQVSE--AGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDR  106 (447)
T ss_pred             ceEEEECCCHHHHHHHHHHHH--CCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccC
Confidence            479999999999999999885  488999998754211 00        0                              


Q ss_pred             ------CchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCC
Q 017664          181 ------GSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       181 ------~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                            ...+.+.+.+.+.+.|++++ ..+|.+++.+++  .|.+++|+++++|.||.|+|..+
T Consensus       107 ~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s  169 (447)
T PLN02463        107 PYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSR  169 (447)
T ss_pred             cceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCc
Confidence                  01122445566677899997 467888876655  68888998999999999999764

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.86  E-value=5e-05  Score=73.06  Aligned_cols=96  Identities=25%  Similarity=0.278  Sum_probs=61.9

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeecc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITDT   93 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   93 (368)
                      ..+++|||||+.|+.+|..|+ .|.+|+++++.+.+...       ..+...........  ..+++++.. .+..++..
T Consensus       172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-------~~~~~~~~l~~~l~--~~gV~i~~~~~V~~i~~~  242 (462)
T PRK06416        172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG-------EDKEISKLAERALK--KRGIKIKTGAKAKKVEQT  242 (462)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc-------CCHHHHHHHHHHHH--HcCCEEEeCCEEEEEEEe
Confidence            468999999999999999987 59999999998765211       11111110000011  125666544 45555432


Q ss_pred             ----EEEecCC---eEEEecEEEEecCCCCCCCC
Q 017664           94 ----EVVTAGG---QTFVYDYVVVATGHVESVPK  120 (368)
Q Consensus        94 ----~v~~~~g---~~~~~d~lvlAtG~~~~~p~  120 (368)
                          .+.+.++   +.+++|.+++|+|..|....
T Consensus       243 ~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~  276 (462)
T PRK06416        243 DDGVTVTLEDGGKEETLEADYVLVAVGRRPNTEN  276 (462)
T ss_pred             CCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCC
Confidence                2344455   67999999999999987654

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.85  E-value=6.6e-05  Score=72.43  Aligned_cols=97  Identities=22%  Similarity=0.277  Sum_probs=61.1

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEee--
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSIT--   91 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--   91 (368)
                      ..+++|||||++|+.+|..|+ .|.+|+|+|+++.+...       ..+...........+  .+++++.. .+..++  
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~-------~~~~~~~~l~~~l~~--~gI~i~~~~~v~~i~~~  250 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT-------EDAELSKEVARLLKK--LGVRVVTGAKVLGLTLK  250 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc-------CCHHHHHHHHHHHHh--cCCEEEeCcEEEEEEEe
Confidence            468999999999999999998 49999999998754211       011111100001111  25665543 344443  


Q ss_pred             -cc---EEEecCC--eEEEecEEEEecCCCCCCCCc
Q 017664           92 -DT---EVVTAGG--QTFVYDYVVVATGHVESVPKS  121 (368)
Q Consensus        92 -~~---~v~~~~g--~~~~~d~lvlAtG~~~~~p~~  121 (368)
                       ..   .+.+.++  ..+++|.+++|+|..|..+.+
T Consensus       251 ~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l  286 (472)
T PRK05976        251 KDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGI  286 (472)
T ss_pred             cCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCC
Confidence             22   1223455  468999999999999987654

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=97.85  E-value=0.00032  Score=58.44  Aligned_cols=162  Identities=18%  Similarity=0.157  Sum_probs=99.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-------c-------------------------------
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF-------V-------------------------------  180 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~-------~-------------------------------  180 (368)
                      ...|+|+|+|++|+-+|.+|++  .+.+|.+++++-.+...       +                               
T Consensus        30 esDViIVGaGPsGLtAAyyLAk--~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~d  107 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAK--AGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVAD  107 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHh--CCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEec
Confidence            4579999999999999999996  48999999987543110       0                               


Q ss_pred             CchhHHHHHHHHHcCCcEEEecceeeecccCCC----eEEcC-----------CCcEEecCEEEEccCCCCC-chhhhcc
Q 017664          181 GSRASQIALDWLTSKKVEVILNQSVTLNTISDG----LIETS-----------SGETIDTDCHFMCTGKAMA-SSWLRET  244 (368)
Q Consensus       181 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~----~v~~~-----------~g~~i~~d~vi~a~G~~p~-~~~~~~~  244 (368)
                      +..+...+....-+.|.+++..+.+..+...++    ++..+           |--.+++++|+-+||.... ..++...
T Consensus       108 s~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr  187 (262)
T COG1635         108 SAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKR  187 (262)
T ss_pred             HHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHh
Confidence            112233344455567899999999887765544    22221           1137999999999997643 2333322


Q ss_pred             c--cccccCCC--------CcEEeCCCeeecCCCCeEEecccCCC--Cccc---hHHHHHHHHHHHHHHHHHHHc
Q 017664          245 I--LKDSLDGR--------GRLMVDENLRVRGFKNVFAIGDITDI--PEIK---QGYLAQKHALVTAKNLKKLMM  304 (368)
Q Consensus       245 ~--l~~~~~~~--------g~i~vd~~~~~~~~~~ifa~GD~~~~--~~~~---~~~~a~~~g~~aa~~i~~~l~  304 (368)
                      .  ++..+-..        -.+.|+.+.+.  +||+|++|=.+..  ..+.   .----.-+|+.+|+.|...|.
T Consensus       188 ~~~l~~~~~Ge~~mw~e~~E~lvV~~T~eV--~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~  260 (262)
T COG1635         188 IPELGIEVPGEKSMWAERGEDLVVENTGEV--YPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLK  260 (262)
T ss_pred             ccccccccCCCcchhhhHHHHHHHhccccc--cCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHHhh
Confidence            2  11111111        11334444444  8999999986532  1111   112345678889988887764

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=97.85  E-value=1.7e-05  Score=73.42  Aligned_cols=38  Identities=16%  Similarity=0.331  Sum_probs=33.9

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeee
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEIT   53 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~   53 (368)
                      ++|++|||||++|+++|.+|+ .|.+|+|+|+++..|+.
T Consensus         1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~   39 (377)
T TIGR00031         1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGN   39 (377)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCc
Confidence            369999999999999999998 49999999999887753

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=97.84  E-value=1.8e-05  Score=74.15  Aligned_cols=43  Identities=28%  Similarity=0.407  Sum_probs=37.4

Q ss_pred             CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceee
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRA   59 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~   59 (368)
                      ++|+|+|||.|||+||+.|. +|++|+|+|.++..|+....++.
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~   44 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRD   44 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeec
Confidence            47999999999999999998 69999999999999876554443

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=97.83  E-value=0.00029  Score=62.40  Aligned_cols=41  Identities=27%  Similarity=0.463  Sum_probs=34.4

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-----cCCcEEEEcCCCceeeecc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-----SFADVVLIDEKEYFEITWA   55 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-----~g~~v~lie~~~~~~~~~~   55 (368)
                      .+.||+|||||-.|.+.|+.|+     .|.+|+|+|+++.+.-..+
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT  130 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSST  130 (509)
T ss_pred             cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccce
Confidence            3679999999999999999886     2799999999998754433

>PRK06126 hypothetical protein; Provisional

Probab=97.83  E-value=2.1e-05  Score=77.34  Aligned_cols=36  Identities=28%  Similarity=0.487  Sum_probs=32.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCc
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEY   49 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~   49 (368)
                      +..+||+||||||+|+++|..|++ |++|+|+|+.+.
T Consensus         5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~   41 (545)
T PRK06126          5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG   41 (545)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            346899999999999999999984 999999999864

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=97.83  E-value=2.1e-05  Score=76.36  Aligned_cols=54  Identities=13%  Similarity=0.180  Sum_probs=41.2

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCC---Cc--EEecCEEEEccCCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSS---GE--TIDTDCHFMCTGKA  235 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~---g~--~i~~d~vi~a~G~~  235 (368)
                      ..+...+.+.+++.|++++++++|..+..+++  .+.+.+   |+  ++.++.||.|+|..
T Consensus       155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~w  215 (508)
T PRK12266        155 ARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPW  215 (508)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCcc
Confidence            35556666778889999999999998876655  344432   43  78999999999975

>PRK12831 putative oxidoreductase; Provisional

Probab=97.83  E-value=6.5e-05  Score=72.08  Aligned_cols=92  Identities=17%  Similarity=0.207  Sum_probs=66.7

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc-------cc--cCch-hHHHHHHHHHcCCcEEEecceeee
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL-------EF--VGSR-ASQIALDWLTSKKVEVILNQSVTL  207 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l-------~~--~~~~-~~~~~~~~l~~~gv~i~~~~~v~~  207 (368)
                      .+++++|||+|+.|+.+|..|++  .+.+|+++++.+.+.       +.  ++.+ +.....+.+++.|+++++++.+..
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~--~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~  216 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAK--MGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK  216 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHh--CCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC
Confidence            47899999999999999999985  588999999765431       11  2222 566667888999999999986621


Q ss_pred             cccCCCeEEcCCC-cEEecCEEEEccCC-CCC
Q 017664          208 NTISDGLIETSSG-ETIDTDCHFMCTGK-AMA  237 (368)
Q Consensus       208 i~~~~~~v~~~~g-~~i~~d~vi~a~G~-~p~  237 (368)
                            .+..++. +.+.+|.||+|||. .|.
T Consensus       217 ------~v~~~~~~~~~~~d~viiAtGa~~~~  242 (464)
T PRK12831        217 ------TVTIDELLEEEGFDAVFIGSGAGLPK  242 (464)
T ss_pred             ------cCCHHHHHhccCCCEEEEeCCCCCCC
Confidence                  2222232 24569999999997 453

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.83  E-value=1.9e-05  Score=73.80  Aligned_cols=32  Identities=22%  Similarity=0.394  Sum_probs=29.6

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCC
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEK   47 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~   47 (368)
                      ++||+||||||+|+++|..|++ |++|+|+|+.
T Consensus         1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~   33 (374)
T PRK06617          1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESK   33 (374)
T ss_pred             CccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence            4689999999999999999985 9999999986

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=97.82  E-value=2e-05  Score=74.14  Aligned_cols=34  Identities=26%  Similarity=0.476  Sum_probs=31.3

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEY   49 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~   49 (368)
                      ++||+||||||+|+++|..|++ |++|+|+|+.+.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence            5799999999999999999985 999999999874

>PRK08244 hypothetical protein; Provisional

Probab=97.82  E-value=1.9e-05  Score=76.60  Aligned_cols=34  Identities=29%  Similarity=0.464  Sum_probs=31.1

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      ++||+||||||+|+++|..|+ .|.+|+|||+.+.
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~   36 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKE   36 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            479999999999999999998 4999999999864

>PRK10262 thioredoxin reductase; Provisional

Probab=97.81  E-value=0.00021  Score=65.34  Aligned_cols=97  Identities=20%  Similarity=0.268  Sum_probs=65.7

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc---cc--------ccc-----cCchhHHHHHHHHHcCCcEEEe
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP---KL--------LEF-----VGSRASQIALDWLTSKKVEVIL  201 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~---~~--------l~~-----~~~~~~~~~~~~l~~~gv~i~~  201 (368)
                      +.++++|||+|+.|+.+|..+.+  .+.++.+++...   .+        ++.     ..+.+.+.+.+..++.+++++.
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~--~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAAR--ANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIF   82 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH--CCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEe
Confidence            46789999999999999999885  366777775321   11        011     1123456667777778888776


Q ss_pred             cceeeecccCCCe--EEcCCCcEEecCEEEEccCCCCCc
Q 017664          202 NQSVTLNTISDGL--IETSSGETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       202 ~~~v~~i~~~~~~--v~~~~g~~i~~d~vi~a~G~~p~~  238 (368)
                      + .+..++..++.  +..+++ .+.+|.+|+|||..|..
T Consensus        83 ~-~v~~v~~~~~~~~v~~~~~-~~~~d~vilAtG~~~~~  119 (321)
T PRK10262         83 D-HINKVDLQNRPFRLTGDSG-EYTCDALIIATGASARY  119 (321)
T ss_pred             e-EEEEEEecCCeEEEEecCC-EEEECEEEECCCCCCCC
Confidence            5 45556555553  433333 68999999999998753

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.81  E-value=2.4e-05  Score=75.97  Aligned_cols=54  Identities=11%  Similarity=0.100  Sum_probs=41.9

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCC----cEEecCEEEEccCCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSG----ETIDTDCHFMCTGKA  235 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g----~~i~~d~vi~a~G~~  235 (368)
                      ..+...+....++.|++++.+++|..+..+++  .+.+.++    .++.++.||.|+|..
T Consensus       155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~w  214 (502)
T PRK13369        155 ARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPW  214 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCcc
Confidence            45566677778899999999999998877655  4554443    368999999999965

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.80  E-value=0.00016  Score=71.10  Aligned_cols=95  Identities=17%  Similarity=0.210  Sum_probs=70.3

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc--------c---cc----cCchhHHHHHHHHHcCCcEEEecce
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL--------L---EF----VGSRASQIALDWLTSKKVEVILNQS  204 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~--------l---~~----~~~~~~~~~~~~l~~~gv~i~~~~~  204 (368)
                      ..|+|||||+.|+.+|..+.+  .+.+|+++++...-        .   +.    ....+.+.+.+.+++.|++++ ++.
T Consensus         5 yDVvIIGgGpAGL~AA~~lar--~g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~   81 (555)
T TIGR03143         5 YDLIIIGGGPAGLSAGIYAGR--AKLDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAE   81 (555)
T ss_pred             CcEEEECCCHHHHHHHHHHHH--CCCCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccE
Confidence            479999999999999999885  57899999975310        0   11    112455667778888999986 567


Q ss_pred             eeecccCCC--eEEcCCCcEEecCEEEEccCCCCCc
Q 017664          205 VTLNTISDG--LIETSSGETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       205 v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~  238 (368)
                      +..+..++.  .+.+.++ ++.+|.+|+|||..|..
T Consensus        82 V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~  116 (555)
T TIGR03143        82 VLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRK  116 (555)
T ss_pred             EEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCC
Confidence            777766544  5666666 58999999999998754

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.80  E-value=0.00016  Score=69.19  Aligned_cols=94  Identities=19%  Similarity=0.204  Sum_probs=64.3

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------------------------cc----C--------
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE---------------------------FV----G--------  181 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~---------------------------~~----~--------  181 (368)
                      .++|||+|+.|+.+|..+++  .+.+|.++++.. +..                           .+    .        
T Consensus         4 DvvVIG~GpaG~~aA~~aa~--~G~~V~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   80 (446)
T TIGR01424         4 DLFVIGAGSGGVRAARLAAN--HGAKVAIAEEPR-VGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKK   80 (446)
T ss_pred             cEEEECCCHHHHHHHHHHHh--CCCcEEEEecCc-cCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHH
Confidence            58999999999999999885  589999998741 100                           00    0        


Q ss_pred             ---------chhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCCcEEecCEEEEccCCCCCch
Q 017664          182 ---------SRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASS  239 (368)
Q Consensus       182 ---------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  239 (368)
                               ..+.+.+++.+++.||+++.+ ++..+..+.-.+ ..+|+++++|.+|+|||.+|..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~~~v~v-~~~g~~~~~d~lIiATGs~p~~p  145 (446)
T TIGR01424        81 LLQKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGPNTVEV-LQDGTTYTAKKILIAVGGRPQKP  145 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEE-ecCCeEEEcCEEEEecCCcCCCC
Confidence                     012233455677889999877 444443321123 34677899999999999998643

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=97.78  E-value=0.00013  Score=70.85  Aligned_cols=103  Identities=17%  Similarity=0.270  Sum_probs=79.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCC-CeEEEEecCcccc-------cccC-----chhHHHHHHHHHcCCcEEEeccee
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPD-KKVILVHRGPKLL-------EFVG-----SRASQIALDWLTSKKVEVILNQSV  205 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~-~~v~~i~~~~~~l-------~~~~-----~~~~~~~~~~l~~~gv~i~~~~~v  205 (368)
                      ..+++|||.|..|.-+..++.+..++ ..|+++...++..       +.+.     .++...-.++.+++||+++++.++
T Consensus         3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v   82 (793)
T COG1251           3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV   82 (793)
T ss_pred             ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence            45799999999999888888864333 3688876555421       1111     133333457899999999999999


Q ss_pred             eecccCCCeEEcCCCcEEecCEEEEccCCCCCchhh
Q 017664          206 TLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWL  241 (368)
Q Consensus       206 ~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~  241 (368)
                      ..|..++..|.+++|.++.+|-+|+|||..|....+
T Consensus        83 ~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~Pi  118 (793)
T COG1251          83 IQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILPI  118 (793)
T ss_pred             EEeccCcceEEccCCcEeecceeEEecCccccccCC
Confidence            999888889999999999999999999999865443

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.78  E-value=6.4e-05  Score=72.22  Aligned_cols=91  Identities=22%  Similarity=0.310  Sum_probs=67.4

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc-------c--ccCchhHHHHHHHHHcCCcEEEecceeeec
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL-------E--FVGSRASQIALDWLTSKKVEVILNQSVTLN  208 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l-------~--~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  208 (368)
                      .+++++|||+|++|+.+|..+++  .+.+|+++++.+.+.       +  ..+.++.....+.+++.|++++.++.+...
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~--~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~  217 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILAR--AGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD  217 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc
Confidence            46899999999999999999985  488999999876542       1  234455666778889999999999876321


Q ss_pred             ccCCCeEEcCCCcEEecCEEEEccCCCCC
Q 017664          209 TISDGLIETSSGETIDTDCHFMCTGKAMA  237 (368)
Q Consensus       209 ~~~~~~v~~~~g~~i~~d~vi~a~G~~p~  237 (368)
                            +..++ ....+|.||+|||..+.
T Consensus       218 ------~~~~~-~~~~~D~vilAtGa~~~  239 (467)
T TIGR01318       218 ------ISLDD-LLEDYDAVFLGVGTYRS  239 (467)
T ss_pred             ------cCHHH-HHhcCCEEEEEeCCCCC
Confidence                  11111 12469999999998764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=97.78  E-value=3e-05  Score=77.17  Aligned_cols=37  Identities=22%  Similarity=0.355  Sum_probs=33.3

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhhc--CCcEEEEcCCCc
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQS--FADVVLIDEKEY   49 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~~--g~~v~lie~~~~   49 (368)
                      |.+++||+||||||+||++|..|++  |.+|+|||+.+.
T Consensus        29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~   67 (634)
T PRK08294         29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG   67 (634)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence            5568899999999999999999974  899999999864

>PRK07846 mycothione reductase; Reviewed

Probab=97.76  E-value=9.3e-05  Score=70.84  Aligned_cols=96  Identities=16%  Similarity=0.197  Sum_probs=62.8

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEE-EeEEEEeecc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIV-VSTAVSITDT   93 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   93 (368)
                      ..+++|||||+.|+.+|..|+ .|.+|+++++.+.+...       ..+... +.+....  ..+++++ ...+..++..
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~-------~d~~~~-~~l~~l~--~~~v~i~~~~~v~~i~~~  235 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH-------LDDDIS-ERFTELA--SKRWDVRLGRNVVGVSQD  235 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-------cCHHHH-HHHHHHH--hcCeEEEeCCEEEEEEEc
Confidence            468999999999999999987 49999999998754311       111111 0011000  1244443 2344444422


Q ss_pred             ----EEEecCCeEEEecEEEEecCCCCCCCCc
Q 017664           94 ----EVVTAGGQTFVYDYVVVATGHVESVPKS  121 (368)
Q Consensus        94 ----~v~~~~g~~~~~d~lvlAtG~~~~~p~~  121 (368)
                          .+.+.+++.+++|.+++|+|..|+.+.+
T Consensus       236 ~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l  267 (451)
T PRK07846        236 GSGVTLRLDDGSTVEADVLLVATGRVPNGDLL  267 (451)
T ss_pred             CCEEEEEECCCcEeecCEEEEEECCccCcccc
Confidence                3555678889999999999999987654

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.76  E-value=0.00019  Score=66.80  Aligned_cols=94  Identities=22%  Similarity=0.275  Sum_probs=64.3

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc-----ccCchhH------------------------------
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE-----FVGSRAS------------------------------  185 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~-----~~~~~~~------------------------------  185 (368)
                      .++|||+|++|+.+|..|.+..++.+|.++++.+.+.+     .+..++.                              
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~   80 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK   80 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence            37999999999999999986556899999998764322     1111111                              


Q ss_pred             --------HHHHHH-HHcCCcEEEecceeeecccCCCeEEcCCCcEEecCEEEEccCCCC
Q 017664          186 --------QIALDW-LTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       186 --------~~~~~~-l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                              ..+.+. +++.+..++.+++|..+.  .+.+.+.+|+++++|.||.|.|..+
T Consensus        81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~--~~~v~l~dg~~~~A~~VI~A~G~~s  138 (370)
T TIGR01789        81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLD--ADGVDLAPGTRINARSVIDCRGFKP  138 (370)
T ss_pred             CCceEEEHHHHHHHHHHhhcccEEecCEEEEEe--CCEEEECCCCEEEeeEEEECCCCCC
Confidence                    011122 222233467788888773  3356668899999999999999775

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK07538 hypothetical protein; Provisional

Probab=97.75  E-value=2.7e-05  Score=73.80  Aligned_cols=33  Identities=33%  Similarity=0.583  Sum_probs=30.4

Q ss_pred             CcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCc
Q 017664           17 KKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEY   49 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~   49 (368)
                      +||+||||||+|+++|..|++ |++|+|+|+.+.
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE   34 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence            489999999999999999985 999999999875

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=97.75  E-value=6.2e-05  Score=71.11  Aligned_cols=94  Identities=22%  Similarity=0.262  Sum_probs=64.2

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEE-EeEEEEeecc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIV-VSTAVSITDT   93 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   93 (368)
                      ..+++|||+|+.|+.+|..|+ +|++|+++|+.+..+.....      +.... .+....+. .+++++ ...+..++.+
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~------~~~~~-~~~~~l~~-~gi~~~~~~~~~~i~~~  207 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD------PEVAE-ELAELLEK-YGVELLLGTKVVGVEGK  207 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh------HHHHH-HHHHHHHH-CCcEEEeCCceEEEEcc
Confidence            479999999999999999998 59999999999987644321      11111 11111111 145553 3344555543


Q ss_pred             ----E---EEecCCeEEEecEEEEecCCCCC
Q 017664           94 ----E---VVTAGGQTFVYDYVVVATGHVES  117 (368)
Q Consensus        94 ----~---v~~~~g~~~~~d~lvlAtG~~~~  117 (368)
                          .   +...++..+++|.+++++|.+|+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~  238 (415)
T COG0446         208 GNTLVVERVVGIDGEEIKADLVIIGPGERPN  238 (415)
T ss_pred             cCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence                1   56677888999999999999985

>PLN02676 polyamine oxidase

Probab=97.75  E-value=2.3e-05  Score=75.60  Aligned_cols=47  Identities=15%  Similarity=0.275  Sum_probs=38.8

Q ss_pred             CCcCCCCCCcEEEECCChHHHHHHHHhhc-CC-cEEEEcCCCceeeecc
Q 017664            9 TAAGLVEKKKVVVIGGGVGGSLLAYHIQS-FA-DVVLIDEKEYFEITWA   55 (368)
Q Consensus         9 ~~~~~~~~~~vvIIGaG~aGl~aA~~L~~-g~-~v~lie~~~~~~~~~~   55 (368)
                      .++.....+||+|||||++||+||++|++ |. +|+|+|+++.+|+...
T Consensus        19 ~~~~~~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~   67 (487)
T PLN02676         19 AAMDAKPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMR   67 (487)
T ss_pred             hhhcccCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcce
Confidence            33445567899999999999999999984 87 6999999999886543

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=97.74  E-value=2.4e-05  Score=70.77  Aligned_cols=39  Identities=21%  Similarity=0.296  Sum_probs=33.6

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-------cCCcEEEEcCCCceeee
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-------SFADVVLIDEKEYFEIT   53 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-------~g~~v~lie~~~~~~~~   53 (368)
                      ..+||+|||||||||+||.+|+       +..+|.|+|+....|..
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Ggh  120 (621)
T KOG2415|consen   75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGH  120 (621)
T ss_pred             ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCc
Confidence            4689999999999999999885       26799999999887743

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.74  E-value=8.4e-05  Score=75.76  Aligned_cols=91  Identities=18%  Similarity=0.242  Sum_probs=67.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc-------c--ccCchhHHHHHHHHHcCCcEEEecceeeecc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL-------E--FVGSRASQIALDWLTSKKVEVILNQSVTLNT  209 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l-------~--~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~  209 (368)
                      +++|+|||+|+.|+.+|..|.+  .+.+|+++++.+.+.       |  .++.++.+...+.+++.||++++++.+.   
T Consensus       431 ~~~V~IIGaGpAGl~aA~~l~~--~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~---  505 (752)
T PRK12778        431 GKKVAVIGSGPAGLSFAGDLAK--RGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVG---  505 (752)
T ss_pred             CCEEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEC---
Confidence            6799999999999999999985  588999999865321       1  1234555666678889999999987652   


Q ss_pred             cCCCeEEcCCCcEEecCEEEEccCC-CCC
Q 017664          210 ISDGLIETSSGETIDTDCHFMCTGK-AMA  237 (368)
Q Consensus       210 ~~~~~v~~~~g~~i~~d~vi~a~G~-~p~  237 (368)
                         ..+.+++.....+|.||+|||. .|.
T Consensus       506 ---~~v~~~~l~~~~ydavvlAtGa~~~~  531 (752)
T PRK12778        506 ---KTITIEELEEEGFKGIFIASGAGLPN  531 (752)
T ss_pred             ---CcCCHHHHhhcCCCEEEEeCCCCCCC
Confidence               1233334345669999999997 354

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=97.74  E-value=0.00011  Score=70.81  Aligned_cols=96  Identities=19%  Similarity=0.221  Sum_probs=62.7

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEee--
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSIT--   91 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--   91 (368)
                      ..+++|||+|+.|+.+|..|+ .|.+|+|+++.+.+...       .++...........+  .+++++.. .+..+.  
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-------~d~~~~~~l~~~l~~--~gI~v~~~~~v~~i~~~  245 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF-------LDDEISDALSYHLRD--SGVTIRHNEEVEKVEGG  245 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc-------CCHHHHHHHHHHHHH--cCCEEEECCEEEEEEEe
Confidence            478999999999999999987 59999999998754211       111111110111111  25665533 444443  


Q ss_pred             cc--EEEecCCeEEEecEEEEecCCCCCCCC
Q 017664           92 DT--EVVTAGGQTFVYDYVVVATGHVESVPK  120 (368)
Q Consensus        92 ~~--~v~~~~g~~~~~d~lvlAtG~~~~~p~  120 (368)
                      ..  .+.+.++..+++|.+++|+|.+|+...
T Consensus       246 ~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~  276 (461)
T PRK05249        246 DDGVIVHLKSGKKIKADCLLYANGRTGNTDG  276 (461)
T ss_pred             CCeEEEEECCCCEEEeCEEEEeecCCccccC
Confidence            22  345567778999999999999987654

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.73  E-value=0.00015  Score=70.07  Aligned_cols=83  Identities=20%  Similarity=0.192  Sum_probs=65.3

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEc
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIET  217 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~  217 (368)
                      .+++++|+|+|.+|+++|..|.+  .+.+|+++++.+.       .....+.+.+++.||+++++..+.           
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~--~G~~V~~~d~~~~-------~~~~~~~~~l~~~gv~~~~~~~~~-----------   74 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLE--LGARVTVVDDGDD-------ERHRALAAILEALGATVRLGPGPT-----------   74 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCch-------hhhHHHHHHHHHcCCEEEECCCcc-----------
Confidence            47899999999999999988874  5789999986643       334556677889999999887542           


Q ss_pred             CCCcEEecCEEEEccCCCCCchhhhc
Q 017664          218 SSGETIDTDCHFMCTGKAMASSWLRE  243 (368)
Q Consensus       218 ~~g~~i~~d~vi~a~G~~p~~~~~~~  243 (368)
                         ....+|+||+++|.+|+.+++..
T Consensus        75 ---~~~~~D~Vv~s~Gi~~~~~~~~~   97 (480)
T PRK01438         75 ---LPEDTDLVVTSPGWRPDAPLLAA   97 (480)
T ss_pred             ---ccCCCCEEEECCCcCCCCHHHHH
Confidence               12469999999999999876543

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=97.72  E-value=3.1e-05  Score=73.86  Aligned_cols=31  Identities=35%  Similarity=0.475  Sum_probs=28.7

Q ss_pred             CcEEEECCChHHHHHHHHhhc-----CCcEEEEcCC
Q 017664           17 KKVVVIGGGVGGSLLAYHIQS-----FADVVLIDEK   47 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~~-----g~~v~lie~~   47 (368)
                      +||+||||||+|+++|..|++     |.+|+|||+.
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~   36 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAV   36 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCC
Confidence            589999999999999999974     9999999994

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.72  E-value=0.00012  Score=70.76  Aligned_cols=97  Identities=24%  Similarity=0.277  Sum_probs=61.4

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeecc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITDT   93 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   93 (368)
                      ..+++|||+|+.|+.+|..|++ |.+|+|+++.+.+...       ..+.+.........+  .+++++.. .+..++..
T Consensus       183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-------~d~~~~~~~~~~l~~--~gi~i~~~~~v~~i~~~  253 (475)
T PRK06327        183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA-------ADEQVAKEAAKAFTK--QGLDIHLGVKIGEIKTG  253 (475)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc-------CCHHHHHHHHHHHHH--cCcEEEeCcEEEEEEEc
Confidence            4689999999999999998874 9999999998754211       011111110001111  25665543 45555422


Q ss_pred             ----EEEecC--C--eEEEecEEEEecCCCCCCCCc
Q 017664           94 ----EVVTAG--G--QTFVYDYVVVATGHVESVPKS  121 (368)
Q Consensus        94 ----~v~~~~--g--~~~~~d~lvlAtG~~~~~p~~  121 (368)
                          .+...+  +  ..+++|.|++|+|..|..+.+
T Consensus       254 ~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l  289 (475)
T PRK06327        254 GKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGL  289 (475)
T ss_pred             CCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCCC
Confidence                233333  2  569999999999999987753

>TIGR02730 carot_isom carotene isomerase

Probab=97.71  E-value=3.3e-05  Score=74.91  Aligned_cols=54  Identities=13%  Similarity=0.112  Sum_probs=46.7

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      ..+.+.+.+.+++.|++++++++|++|..+++   .+++.+|+++++|.||+++|..
T Consensus       229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~  285 (493)
T TIGR02730       229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRW  285 (493)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChH
Confidence            46778888999999999999999999887655   6788899899999999998854

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK09897 hypothetical protein; Provisional

Probab=97.70  E-value=0.00032  Score=67.97  Aligned_cols=97  Identities=20%  Similarity=0.170  Sum_probs=66.2

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc----------------------------------------
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF----------------------------------------  179 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~----------------------------------------  179 (368)
                      ++|+|||+|++|+-+|..|.+.....+|++++++..+...                                        
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~   81 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL   81 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence            5799999999999999999864445689999986432100                                        


Q ss_pred             --------------cCch--hH-------HHHHHHHHcCC--cEEEecceeeecccCCC--eEEcCC-CcEEecCEEEEc
Q 017664          180 --------------VGSR--AS-------QIALDWLTSKK--VEVILNQSVTLNTISDG--LIETSS-GETIDTDCHFMC  231 (368)
Q Consensus       180 --------------~~~~--~~-------~~~~~~l~~~g--v~i~~~~~v~~i~~~~~--~v~~~~-g~~i~~d~vi~a  231 (368)
                                    +.|.  ..       +.+.+.+++.|  +.++.+++|+.++.+++  .+.+.+ +..+.+|.||+|
T Consensus        82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLA  161 (534)
T PRK09897         82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIA  161 (534)
T ss_pred             HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEEC
Confidence                          0000  00       11223344555  78888989999877655  556545 468999999999


Q ss_pred             cCCCC
Q 017664          232 TGKAM  236 (368)
Q Consensus       232 ~G~~p  236 (368)
                      +|..+
T Consensus       162 tGh~~  166 (534)
T PRK09897        162 TGHVW  166 (534)
T ss_pred             CCCCC
Confidence            99754

>PTZ00367 squalene epoxidase; Provisional

Probab=97.70  E-value=4.2e-05  Score=74.74  Aligned_cols=34  Identities=21%  Similarity=0.470  Sum_probs=31.3

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~   48 (368)
                      ..+||+|||||++|+++|..|++ |++|+|+|+..
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            46899999999999999999984 99999999975

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.70  E-value=0.00015  Score=63.67  Aligned_cols=40  Identities=28%  Similarity=0.300  Sum_probs=33.9

Q ss_pred             cEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccce
Q 017664           18 KVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASL   57 (368)
Q Consensus        18 ~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~   57 (368)
                      .+||||+|.|||+|+..+- ++-.|+++|++..+|++....
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKA   51 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKA   51 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceec
Confidence            6999999999999999886 566799999999988665443

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.69  E-value=0.00017  Score=69.31  Aligned_cols=97  Identities=18%  Similarity=0.215  Sum_probs=60.8

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeecc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITDT   93 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   93 (368)
                      ..+++|||||+.|+.+|..|+ .|.+|+++++.+.+...       ..+.+.........+  .+++++.. .+..++..
T Consensus       170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~-------~d~e~~~~l~~~L~~--~GI~i~~~~~V~~i~~~  240 (458)
T PRK06912        170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG-------EDEDIAHILREKLEN--DGVKIFTGAALKGLNSY  240 (458)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc-------ccHHHHHHHHHHHHH--CCCEEEECCEEEEEEEc
Confidence            468999999999999999887 49999999998764311       011111000001111  25666543 44555432


Q ss_pred             --EEEe-cCC--eEEEecEEEEecCCCCCCCCc
Q 017664           94 --EVVT-AGG--QTFVYDYVVVATGHVESVPKS  121 (368)
Q Consensus        94 --~v~~-~~g--~~~~~d~lvlAtG~~~~~p~~  121 (368)
                        .+.. .++  ..+.+|.|++|+|..|+...+
T Consensus       241 ~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l  273 (458)
T PRK06912        241 KKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQL  273 (458)
T ss_pred             CCEEEEEECCceEEEEeCEEEEecCCccCCCCC
Confidence              2322 233  368999999999999887653

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.69  E-value=0.00011  Score=70.95  Aligned_cols=88  Identities=18%  Similarity=0.325  Sum_probs=66.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc-------c--ccCchhHHHHHHHHHcCCcEEEecceeeecc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL-------E--FVGSRASQIALDWLTSKKVEVILNQSVTLNT  209 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l-------~--~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~  209 (368)
                      +++++|||+|++|+.+|..|.+  .+.+|+++++.+++.       +  ..+.++.....+.+++.||++++++.+.. .
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~--~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~-~  219 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNR--AGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGV-D  219 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHH--cCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCC-c
Confidence            5799999999999999999985  478999999877542       2  12445666667888999999999987741 1


Q ss_pred             cCCCeEEcCCCcEEecCEEEEccCCC
Q 017664          210 ISDGLIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       210 ~~~~~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      ..      .++...++|.||+|||..
T Consensus       220 ~~------~~~~~~~~d~VilAtGa~  239 (485)
T TIGR01317       220 IS------ADELKEQFDAVVLAGGAT  239 (485)
T ss_pred             cC------HHHHHhhCCEEEEccCCC
Confidence            11      111235799999999987

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>TIGR02731 phytoene_desat phytoene desaturase

Probab=97.69  E-value=3.7e-05  Score=73.81  Aligned_cols=53  Identities=26%  Similarity=0.334  Sum_probs=42.2

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccC-CC---eEEcCCCc-----EEecCEEEEccCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTIS-DG---LIETSSGE-----TIDTDCHFMCTGK  234 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~-~~---~v~~~~g~-----~i~~d~vi~a~G~  234 (368)
                      ..+.+.+.+.+++.|++|++++.|++|+.+ ++   ++++.+|+     ++.+|.||+++..
T Consensus       213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~  274 (453)
T TIGR02731       213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV  274 (453)
T ss_pred             HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence            356788888899999999999999999753 33   36665554     7999999999864

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PLN02661 Putative thiazole synthesis

Probab=97.68  E-value=4.1e-05  Score=69.45  Aligned_cols=36  Identities=25%  Similarity=0.433  Sum_probs=32.5

Q ss_pred             CCcEEEECCChHHHHHHHHhh-c-CCcEEEEcCCCcee
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-S-FADVVLIDEKEYFE   51 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~-g~~v~lie~~~~~~   51 (368)
                      .+||+|||||++|++||+.|+ . +.+|+|+|++...+
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~G  129 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPG  129 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccc
Confidence            679999999999999999997 3 89999999987764

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.67  E-value=0.00012  Score=76.30  Aligned_cols=89  Identities=16%  Similarity=0.163  Sum_probs=65.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc-------c--ccCchhHHHHHHHHHcCCcEEEecceeeecc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL-------E--FVGSRASQIALDWLTSKKVEVILNQSVTLNT  209 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l-------~--~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~  209 (368)
                      +++|+|||+|+.|+.+|..|.+  .+.+|+++++.+.+.       |  ..+.++.....+.+++.||++++++.+..  
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~--~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~--  505 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVK--YGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGK--  505 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccCC--
Confidence            5799999999999999999995  488999999876442       1  12456677778889999999999975421  


Q ss_pred             cCCCeEEcCCC-cEEecCEEEEccCCC
Q 017664          210 ISDGLIETSSG-ETIDTDCHFMCTGKA  235 (368)
Q Consensus       210 ~~~~~v~~~~g-~~i~~d~vi~a~G~~  235 (368)
                          .+...+- +...+|.||+|||..
T Consensus       506 ----~~~~~~l~~~~~yDaViIATGa~  528 (1006)
T PRK12775        506 ----TFTVPQLMNDKGFDAVFLGVGAG  528 (1006)
T ss_pred             ----ccCHHHHhhccCCCEEEEecCCC
Confidence                1111111 124589999999984

>PRK14694 putative mercuric reductase; Provisional

Probab=97.67  E-value=0.00014  Score=70.12  Aligned_cols=95  Identities=16%  Similarity=0.181  Sum_probs=59.6

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeec-
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITD-   92 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   92 (368)
                      ..+++|||+|+.|+.+|..|+ .|.+|+++++...+..        ..+...........  ..+++++.. .+..++. 
T Consensus       178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~--------~~~~~~~~l~~~l~--~~GI~v~~~~~v~~i~~~  247 (468)
T PRK14694        178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQ--------EDPAVGEAIEAAFR--REGIEVLKQTQASEVDYN  247 (468)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCC--------CCHHHHHHHHHHHH--hCCCEEEeCCEEEEEEEc
Confidence            468999999999999999987 5999999997543221        11111111000111  125666554 4455542 


Q ss_pred             -c--EEEecCCeEEEecEEEEecCCCCCCCCc
Q 017664           93 -T--EVVTAGGQTFVYDYVVVATGHVESVPKS  121 (368)
Q Consensus        93 -~--~v~~~~g~~~~~d~lvlAtG~~~~~p~~  121 (368)
                       .  .+.+. +..+++|.+++|+|..|+....
T Consensus       248 ~~~~~v~~~-~~~i~~D~vi~a~G~~pn~~~l  278 (468)
T PRK14694        248 GREFILETN-AGTLRAEQLLVATGRTPNTENL  278 (468)
T ss_pred             CCEEEEEEC-CCEEEeCEEEEccCCCCCcCCC
Confidence             2  23333 3469999999999999877643

>TIGR02053 MerA mercuric reductase

Probab=97.66  E-value=0.00016  Score=69.64  Aligned_cols=96  Identities=20%  Similarity=0.241  Sum_probs=60.2

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeecc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITDT   93 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   93 (368)
                      ..+++|||+|+.|+.+|..|+ .|.+|+++++.+.+....       ++...........  ..+++++.. .+..++..
T Consensus       166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~-------d~~~~~~l~~~l~--~~gV~i~~~~~V~~i~~~  236 (463)
T TIGR02053       166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPRE-------EPEISAAVEEALA--EEGIEVVTSAQVKAVSVR  236 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCcc-------CHHHHHHHHHHHH--HcCCEEEcCcEEEEEEEc
Confidence            468999999999999999987 599999999987543110       1111110000011  125665543 34444321


Q ss_pred             ----EEEec---CCeEEEecEEEEecCCCCCCCC
Q 017664           94 ----EVVTA---GGQTFVYDYVVVATGHVESVPK  120 (368)
Q Consensus        94 ----~v~~~---~g~~~~~d~lvlAtG~~~~~p~  120 (368)
                          .+.+.   +++++++|.+++|+|..|...+
T Consensus       237 ~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~  270 (463)
T TIGR02053       237 GGGKIITVEKPGGQGEVEADELLVATGRRPNTDG  270 (463)
T ss_pred             CCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCC
Confidence                23332   2367999999999999988764

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.66  E-value=0.00019  Score=73.98  Aligned_cols=88  Identities=16%  Similarity=0.186  Sum_probs=63.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc-------c--ccCchhHHHHHHHHHcCCcEEEecceeeecc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL-------E--FVGSRASQIALDWLTSKKVEVILNQSVTLNT  209 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l-------~--~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~  209 (368)
                      +++|+|||+|+.|+.+|..|++  .+.+|+++++.+.+.       |  ..+.+..+...+.+.+.||++++++...   
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr--~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~d---  611 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLAR--AGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSPD---  611 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHH--CCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEecccc---
Confidence            4789999999999999999985  588999999876432       1  1233455555677888999999885311   


Q ss_pred             cCCCeEEcCCCcEEecCEEEEccCCCC
Q 017664          210 ISDGLIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       210 ~~~~~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                           +...+.+...+|.||+|||..+
T Consensus       612 -----~~ve~l~~~gYDaVIIATGA~~  633 (1012)
T TIGR03315       612 -----LTVAELKNQGYKYVILAIGAWK  633 (1012)
T ss_pred             -----eEhhhhhcccccEEEECCCCCC
Confidence                 1222333456999999999874

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.66  E-value=4.8e-05  Score=75.12  Aligned_cols=35  Identities=31%  Similarity=0.575  Sum_probs=31.8

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCC
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKE   48 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~   48 (368)
                      .++.+|+|||||++||++|..|++ |++|+|+|+.+
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            456899999999999999999985 99999999975

>TIGR03452 mycothione_red mycothione reductase

Probab=97.65  E-value=0.00016  Score=69.35  Aligned_cols=96  Identities=16%  Similarity=0.209  Sum_probs=61.9

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEE-eEEEEeec-
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVV-STAVSITD-   92 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-   92 (368)
                      ..+++|||+|+.|+.+|..|+ .|.+|+++++.+.+...       ..+.... .+....  ..+++++. ..+..++. 
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~-------~d~~~~~-~l~~~~--~~gI~i~~~~~V~~i~~~  238 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH-------LDEDISD-RFTEIA--KKKWDIRLGRNVTAVEQD  238 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-------cCHHHHH-HHHHHH--hcCCEEEeCCEEEEEEEc
Confidence            468999999999999999987 49999999998764211       1111111 011100  12444442 34444432 


Q ss_pred             -c--EEEecCCeEEEecEEEEecCCCCCCCCc
Q 017664           93 -T--EVVTAGGQTFVYDYVVVATGHVESVPKS  121 (368)
Q Consensus        93 -~--~v~~~~g~~~~~d~lvlAtG~~~~~p~~  121 (368)
                       .  .+.+.+++.+++|.+++|+|..|+...+
T Consensus       239 ~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l  270 (452)
T TIGR03452       239 GDGVTLTLDDGSTVTADVLLVATGRVPNGDLL  270 (452)
T ss_pred             CCeEEEEEcCCCEEEcCEEEEeeccCcCCCCc
Confidence             2  3455567789999999999999877553

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PLN02529 lysine-specific histone demethylase 1

Probab=97.65  E-value=5.7e-05  Score=75.52  Aligned_cols=42  Identities=17%  Similarity=0.170  Sum_probs=37.0

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeec
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITW   54 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~   54 (368)
                      ..+.++|+|||||++||+||..|+ +|++|+|+|+++.+|+..
T Consensus       157 ~~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~  199 (738)
T PLN02529        157 EGTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRV  199 (738)
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCce
Confidence            345789999999999999999998 599999999999888653

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=97.65  E-value=4.6e-05  Score=72.29  Aligned_cols=56  Identities=20%  Similarity=0.186  Sum_probs=40.2

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEc---CCCc--EEecCEEEEccCCCCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIET---SSGE--TIDTDCHFMCTGKAMA  237 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~---~~g~--~i~~d~vi~a~G~~p~  237 (368)
                      ..+...+.+.+++.|++++.++.++++..+++   .+..   .+|+  ++.++.||+|||-...
T Consensus       141 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  141 KALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             HHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            45677788899999999999999999888766   3322   4564  6789999999996543

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=0.00049  Score=61.88  Aligned_cols=95  Identities=21%  Similarity=0.299  Sum_probs=70.4

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCe-EEEEecCccc-----------ccc-----cCchhHHHHHHHHHcCCcEEEec
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKK-VILVHRGPKL-----------LEF-----VGSRASQIALDWLTSKKVEVILN  202 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~-v~~i~~~~~~-----------l~~-----~~~~~~~~~~~~l~~~gv~i~~~  202 (368)
                      ..++|||+|+.|+-.|.++.+  .+.+ +.+++....-           .|.     ..+++.+.+.++.+..++++.. 
T Consensus         4 ~DviIIG~GPAGl~AAiya~r--~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-   80 (305)
T COG0492           4 YDVIIIGGGPAGLTAAIYAAR--AGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-   80 (305)
T ss_pred             eeEEEECCCHHHHHHHHHHHH--cCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-
Confidence            469999999999999998885  3545 5555543110           111     3456777788888889999987 


Q ss_pred             ceeeecccCC-C-eEEcCCCcEEecCEEEEccCCCCCc
Q 017664          203 QSVTLNTISD-G-LIETSSGETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       203 ~~v~~i~~~~-~-~v~~~~g~~i~~d~vi~a~G~~p~~  238 (368)
                      ..+.+++..+ . .+.+++++ ++++.||+|||..+..
T Consensus        81 ~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~  117 (305)
T COG0492          81 DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARK  117 (305)
T ss_pred             EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccC
Confidence            6777777666 4 78888887 9999999999987654

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.64  E-value=0.00035  Score=66.82  Aligned_cols=97  Identities=19%  Similarity=0.231  Sum_probs=62.7

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-------cCc-----------hhH----------HHH---
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF-------VGS-----------RAS----------QIA---  188 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~-------~~~-----------~~~----------~~~---  188 (368)
                      -.++|||+|+.|+.+|..+.+  .+.+|.++++.+..+..       .+.           .+.          ..+   
T Consensus         4 yDvvVIGgGpaGl~aA~~la~--~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (441)
T PRK08010          4 YQAVIIGFGKAGKTLAVTLAK--AGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNK   81 (441)
T ss_pred             CCEEEECCCHhHHHHHHHHHH--CCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence            379999999999999999985  47899999986432100       000           111          111   


Q ss_pred             -HHHHH-cCCcEEEecceeeecccCCCeEEcCCCc-EEecCEEEEccCCCCCch
Q 017664          189 -LDWLT-SKKVEVILNQSVTLNTISDGLIETSSGE-TIDTDCHFMCTGKAMASS  239 (368)
Q Consensus       189 -~~~l~-~~gv~i~~~~~v~~i~~~~~~v~~~~g~-~i~~d~vi~a~G~~p~~~  239 (368)
                       .+.+. ..|++++.+. +..+....-.+.+.+|+ ++.+|.+|+|||.+|..+
T Consensus        82 ~~~~~~~~~gv~~~~g~-~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p  134 (441)
T PRK08010         82 NFHNLADMPNIDVIDGQ-AEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVP  134 (441)
T ss_pred             HHHHHhhcCCcEEEEEE-EEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCC
Confidence             11223 3489998764 44333221156666775 699999999999987543

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.63  E-value=0.00015  Score=69.95  Aligned_cols=89  Identities=21%  Similarity=0.338  Sum_probs=65.6

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------ccCchhHHHHHHHHHcCCcEEEecceeeec
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE---------FVGSRASQIALDWLTSKKVEVILNQSVTLN  208 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~---------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  208 (368)
                      .+++++|||+|+.|+.+|..+.+  .+.+|+++++.+.+..         ..+.++.....+.+++.|+++++++.+.. 
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~--~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-  218 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLAR--AGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK-  218 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHh--CCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC-
Confidence            35799999999999999999985  5889999998765421         12344555666788999999999987631 


Q ss_pred             ccCCCeEEcCCCcEEecCEEEEccCCC
Q 017664          209 TISDGLIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       209 ~~~~~~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      ...     . +.....+|.+|+|||..
T Consensus       219 ~~~-----~-~~~~~~~d~vvlAtGa~  239 (471)
T PRK12810        219 DIT-----A-EELLAEYDAVFLGTGAY  239 (471)
T ss_pred             cCC-----H-HHHHhhCCEEEEecCCC
Confidence            100     0 11135799999999987

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=97.63  E-value=6.8e-05  Score=71.48  Aligned_cols=60  Identities=18%  Similarity=0.179  Sum_probs=44.0

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccC--CC---eEEcC-CCcEEecCEEEEccC-CCCCchhh
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTIS--DG---LIETS-SGETIDTDCHFMCTG-KAMASSWL  241 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~--~~---~v~~~-~g~~i~~d~vi~a~G-~~p~~~~~  241 (368)
                      ..+.+.+.+.+++.|++++++++++++..+  ++   .+... ++.++.++.||+|+| +..|.+++
T Consensus       123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~  189 (432)
T TIGR02485       123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWL  189 (432)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHH
Confidence            356777888899999999999999988765  34   23333 345899999999999 33444443

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK06116 glutathione reductase; Validated

Probab=97.62  E-value=0.00014  Score=69.69  Aligned_cols=97  Identities=14%  Similarity=0.157  Sum_probs=62.9

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeec-
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITD-   92 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   92 (368)
                      ..+++|||+|+.|+-+|..|+ .|.+|+++++++.+...       ..+...........  ..+++++.. .+..++. 
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-------~~~~~~~~l~~~L~--~~GV~i~~~~~V~~i~~~  237 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRG-------FDPDIRETLVEEME--KKGIRLHTNAVPKAVEKN  237 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccc-------cCHHHHHHHHHHHH--HCCcEEECCCEEEEEEEc
Confidence            468999999999999999987 49999999998754211       11111110000011  125555432 4444432 


Q ss_pred             --c--EEEecCCeEEEecEEEEecCCCCCCCCc
Q 017664           93 --T--EVVTAGGQTFVYDYVVVATGHVESVPKS  121 (368)
Q Consensus        93 --~--~v~~~~g~~~~~d~lvlAtG~~~~~p~~  121 (368)
                        .  .+.+.+++.+++|.+++|+|..|+...+
T Consensus       238 ~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l  270 (450)
T PRK06116        238 ADGSLTLTLEDGETLTVDCLIWAIGREPNTDGL  270 (450)
T ss_pred             CCceEEEEEcCCcEEEeCEEEEeeCCCcCCCCC
Confidence              1  3556678889999999999999887653

>PRK06370 mercuric reductase; Validated

Probab=97.62  E-value=0.00022  Score=68.65  Aligned_cols=96  Identities=17%  Similarity=0.204  Sum_probs=61.1

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeecc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITDT   93 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   93 (368)
                      ..+++|||+|+.|+.+|..|+ .|.+|+++++.+.+....       .+...........  ..+++++.. .+..++..
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~-------~~~~~~~l~~~l~--~~GV~i~~~~~V~~i~~~  241 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPRE-------DEDVAAAVREILE--REGIDVRLNAECIRVERD  241 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCccc-------CHHHHHHHHHHHH--hCCCEEEeCCEEEEEEEc
Confidence            468999999999999999987 599999999987653110       1111100000011  125666543 45555432


Q ss_pred             ----EEEe---cCCeEEEecEEEEecCCCCCCCC
Q 017664           94 ----EVVT---AGGQTFVYDYVVVATGHVESVPK  120 (368)
Q Consensus        94 ----~v~~---~~g~~~~~d~lvlAtG~~~~~p~  120 (368)
                          .+..   .++..+++|.+++|+|..|+...
T Consensus       242 ~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~  275 (463)
T PRK06370        242 GDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDD  275 (463)
T ss_pred             CCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCC
Confidence                2322   23457999999999999988763

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.62  E-value=0.00016  Score=69.15  Aligned_cols=96  Identities=15%  Similarity=0.108  Sum_probs=60.8

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeec-
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITD-   92 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   92 (368)
                      ..+++|||||+.|+-+|..|+ .|.+|+|+++.+.+...       .++...........  ..+++++.. .+..+.. 
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~-------~d~~~~~~~~~~l~--~~gI~i~~~~~v~~i~~~  236 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS-------FDSMISETITEEYE--KEGINVHKLSKPVKVEKT  236 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc-------cCHHHHHHHHHHHH--HcCCEEEcCCEEEEEEEe
Confidence            468999999999999999987 49999999998754211       11111111000011  124555433 3333332 


Q ss_pred             ----cEEEecCC-eEEEecEEEEecCCCCCCCC
Q 017664           93 ----TEVVTAGG-QTFVYDYVVVATGHVESVPK  120 (368)
Q Consensus        93 ----~~v~~~~g-~~~~~d~lvlAtG~~~~~p~  120 (368)
                          ..+.+.++ ..+.+|.+++|+|..|+...
T Consensus       237 ~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~  269 (450)
T TIGR01421       237 VEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKG  269 (450)
T ss_pred             CCceEEEEECCCcEEEEcCEEEEeeCCCcCccc
Confidence                13455566 57999999999999988764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.58  E-value=0.00046  Score=66.42  Aligned_cols=95  Identities=25%  Similarity=0.318  Sum_probs=64.5

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc--------ccc--------------------ccCc---------
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK--------LLE--------------------FVGS---------  182 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~--------~l~--------------------~~~~---------  182 (368)
                      ++++|||+|+.|+.+|..+.+  .+.+|.++++..-        ..|                    ....         
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~--~g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   79 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQ--LGADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVD   79 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHh--CCCeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccC
Confidence            579999999999999999985  4889999997540        000                    0000         


Q ss_pred             --h-----------hHHHHHHHHHcCCcEEEecceeeecc--cCCC--eEEcCCCc--EEecCEEEEccCCCCC
Q 017664          183 --R-----------ASQIALDWLTSKKVEVILNQSVTLNT--ISDG--LIETSSGE--TIDTDCHFMCTGKAMA  237 (368)
Q Consensus       183 --~-----------~~~~~~~~l~~~gv~i~~~~~v~~i~--~~~~--~v~~~~g~--~i~~d~vi~a~G~~p~  237 (368)
                        .           ....+.+.+++.||+++.++- ..++  .+++  .+.+.+|+  ++.+|.+|+|||.+|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~-~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~  152 (466)
T PRK07845         80 LPAVNARVKALAAAQSADIRARLEREGVRVIAGRG-RLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPR  152 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-EEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCC
Confidence              0           012234556778999988753 3222  2333  45566775  7999999999999985

>PLN02487 zeta-carotene desaturase

Probab=97.58  E-value=9.6e-05  Score=72.17  Aligned_cols=53  Identities=13%  Similarity=0.112  Sum_probs=42.7

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCC---C-----eEEc---CCCcEEecCEEEEccCCC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISD---G-----LIET---SSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~---~-----~v~~---~~g~~i~~d~vi~a~G~~  235 (368)
                      .+.+.+.+.++++|.++++++.|++|+.+.   +     .+++   .+++.+++|.||++++..
T Consensus       296 ~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~  359 (569)
T PLN02487        296 RLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP  359 (569)
T ss_pred             HHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence            478889999999999999999999998752   1     3455   344579999999999854

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=97.58  E-value=4.3e-05  Score=66.86  Aligned_cols=105  Identities=20%  Similarity=0.233  Sum_probs=72.8

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc--ccc---CchhHHH-----HHHHHHcCCcEEEecceeee
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL--EFV---GSRASQI-----ALDWLTSKKVEVILNQSVTL  207 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l--~~~---~~~~~~~-----~~~~l~~~gv~i~~~~~v~~  207 (368)
                      +.-+++|||||.-|+-+|..+.++.+..+|-++++.+...  |.+   ...+...     -+..+--.|.+.+. .+|.+
T Consensus        38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~-ekv~~  116 (446)
T KOG3851|consen   38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIK-EKVKE  116 (446)
T ss_pred             cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHH-HHHHh
Confidence            4568999999999999999999888888999998776421  111   1111100     01112223444433 56777


Q ss_pred             cccCCCeEEcCCCcEEecCEEEEccCCCCCchhhhc
Q 017664          208 NTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRE  243 (368)
Q Consensus       208 i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~  243 (368)
                      .+.+++.|.+.+|++|.+|++|+|+|..-+.+.++.
T Consensus       117 f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkG  152 (446)
T KOG3851|consen  117 FNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKG  152 (446)
T ss_pred             cCCCcCeEEccCCcEEeeeeEeeeeeceeccchhcC
Confidence            778888999999999999999999998866655443

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.57  E-value=0.00023  Score=68.49  Aligned_cols=96  Identities=24%  Similarity=0.266  Sum_probs=60.4

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeecc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITDT   93 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   93 (368)
                      ..+++|||+|+.|+.+|..|+ .|.+|+|+|+.+.+....       ++...........+  .+++++.. .+..++..
T Consensus       172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~-------d~~~~~~l~~~l~~--~gV~i~~~~~v~~i~~~  242 (466)
T PRK07818        172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNE-------DAEVSKEIAKQYKK--LGVKILTGTKVESIDDN  242 (466)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCcc-------CHHHHHHHHHHHHH--CCCEEEECCEEEEEEEe
Confidence            468999999999999999988 499999999877542111       11111000001111  25666533 44455321


Q ss_pred             ----EEEec--CC--eEEEecEEEEecCCCCCCCC
Q 017664           94 ----EVVTA--GG--QTFVYDYVVVATGHVESVPK  120 (368)
Q Consensus        94 ----~v~~~--~g--~~~~~d~lvlAtG~~~~~p~  120 (368)
                          .+.+.  ++  ..+++|.+++|+|..|+...
T Consensus       243 ~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~  277 (466)
T PRK07818        243 GSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEG  277 (466)
T ss_pred             CCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCC
Confidence                23332  45  47999999999999988764

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=97.56  E-value=0.00061  Score=66.24  Aligned_cols=133  Identities=17%  Similarity=0.210  Sum_probs=80.0

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-------------------------------c--------
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF-------------------------------V--------  180 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~-------------------------------~--------  180 (368)
                      |+|+|||+|++|+-.+..+.+  .|.+++++++++.+..-                               +        
T Consensus         2 krVaVIGaG~sGL~a~k~l~e--~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~   79 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLE--EGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPD   79 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHH--TT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSS
T ss_pred             CEEEEECccHHHHHHHHHHHH--CCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCC
Confidence            799999999999999999886  48899999987643110                               0        


Q ss_pred             ---CchhHHHHHHHHHcCCc--EEEecceeeecccCC-----C--eEEcCC-Cc--EEecCEEEEccCCC--CCchhhhc
Q 017664          181 ---GSRASQIALDWLTSKKV--EVILNQSVTLNTISD-----G--LIETSS-GE--TIDTDCHFMCTGKA--MASSWLRE  243 (368)
Q Consensus       181 ---~~~~~~~~~~~l~~~gv--~i~~~~~v~~i~~~~-----~--~v~~~~-g~--~i~~d~vi~a~G~~--p~~~~~~~  243 (368)
                         ..++.++++++.+..++  .|+++++|.+++..+     +  .|.+.+ |+  +..+|.|++|+|.-  |+.+.-.-
T Consensus        80 f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~  159 (531)
T PF00743_consen   80 FPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSF  159 (531)
T ss_dssp             SEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----
T ss_pred             CCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhh
Confidence               13456667777777776  588899999886532     2  565543 42  45699999999964  44332111


Q ss_pred             cccccccCCCCcEEeCCCeeec---CCCCeEEecccC
Q 017664          244 TILKDSLDGRGRLMVDENLRVR---GFKNVFAIGDIT  277 (368)
Q Consensus       244 ~~l~~~~~~~g~i~vd~~~~~~---~~~~ifa~GD~~  277 (368)
                      .+++   .-+|.+.=...++..   ..++|-++|-..
T Consensus       160 ~G~e---~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~  193 (531)
T PF00743_consen  160 PGLE---KFKGEIIHSKDYRDPEPFKGKRVLVVGGGN  193 (531)
T ss_dssp             CTGG---GHCSEEEEGGG--TGGGGTTSEEEEESSSH
T ss_pred             hhhh---cCCeeEEccccCcChhhcCCCEEEEEeCCH
Confidence            2321   114555443333332   367888888754

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.56  E-value=0.0014  Score=57.87  Aligned_cols=48  Identities=23%  Similarity=0.369  Sum_probs=38.8

Q ss_pred             eCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCCCC
Q 017664          258 VDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNK  308 (368)
Q Consensus       258 vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~  308 (368)
                      .|+++|.++.||+|++|-..+.-.   -..+...|.+|+.|.++...|.++
T Consensus       325 L~~tl~lk~~p~l~fAGQitG~EG---YveSaA~Gllag~naa~~~~g~~~  372 (439)
T COG1206         325 LDPTLQLKKRPNLFFAGQITGVEG---YVESAASGLLAGINAARLALGEEP  372 (439)
T ss_pred             hhHHhhcccCCCcEEeeeeecchh---hhHHhhhhHHHhhHHHHHhcCCCC
Confidence            456788888999999999987632   246778899999999998888764

>PLN02507 glutathione reductase

Probab=97.56  E-value=0.00024  Score=68.90  Aligned_cols=96  Identities=25%  Similarity=0.266  Sum_probs=61.3

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeec-
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITD-   92 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   92 (368)
                      ..+++|||+|+.|+-.|..|+ .|.+|+|+++.+....   .    .++...........+  .+++++.. .+..++. 
T Consensus       203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~---~----~d~~~~~~l~~~l~~--~GI~i~~~~~V~~i~~~  273 (499)
T PLN02507        203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR---G----FDDEMRAVVARNLEG--RGINLHPRTNLTQLTKT  273 (499)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCc---c----cCHHHHHHHHHHHHh--CCCEEEeCCEEEEEEEe
Confidence            468999999999999999887 4999999998774311   0    111111000000111  25555433 3444432 


Q ss_pred             -c--EEEecCCeEEEecEEEEecCCCCCCCC
Q 017664           93 -T--EVVTAGGQTFVYDYVVVATGHVESVPK  120 (368)
Q Consensus        93 -~--~v~~~~g~~~~~d~lvlAtG~~~~~p~  120 (368)
                       +  .+.+.++..+++|.+++|+|..|+...
T Consensus       274 ~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~  304 (499)
T PLN02507        274 EGGIKVITDHGEEFVADVVLFATGRAPNTKR  304 (499)
T ss_pred             CCeEEEEECCCcEEEcCEEEEeecCCCCCCC
Confidence             2  355567778999999999999988765

>PRK08244 hypothetical protein; Provisional

Probab=97.55  E-value=0.00063  Score=66.08  Aligned_cols=95  Identities=21%  Similarity=0.308  Sum_probs=68.8

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc-----------------------------------------
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE-----------------------------------------  178 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~-----------------------------------------  178 (368)
                      ..|+|||+|++|+-+|..|.+  .+.+|+++++.+...+                                         
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~--~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~   80 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELAL--AGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDT   80 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccc
Confidence            469999999999999999985  5889999997642100                                         


Q ss_pred             --cc--------------CchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEc--CCC-cEEecCEEEEccCCCC
Q 017664          179 --FV--------------GSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIET--SSG-ETIDTDCHFMCTGKAM  236 (368)
Q Consensus       179 --~~--------------~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~--~~g-~~i~~d~vi~a~G~~p  236 (368)
                        .+              ...+.+.+.+.+++.|++++.++++.+++.+++  .+.+  .+| +++++|++|.|.|...
T Consensus        81 ~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S  159 (493)
T PRK08244         81 RLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGS  159 (493)
T ss_pred             cCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCCh
Confidence              00              012234455667778999999999998876655  3333  345 4799999999999764

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=97.55  E-value=8.4e-05  Score=72.99  Aligned_cols=36  Identities=25%  Similarity=0.505  Sum_probs=32.6

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      |..+.||||||+|.|||+||..++ .|.+|+||||.+
T Consensus         1 ~~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~   37 (549)
T PRK12834          1 MAMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN   37 (549)
T ss_pred             CCccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            346789999999999999999987 599999999998

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=97.55  E-value=8.8e-05  Score=65.13  Aligned_cols=39  Identities=13%  Similarity=0.266  Sum_probs=35.2

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeec
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITW   54 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~   54 (368)
                      ++|++|||||.+|+..|..|++ |.+|+||||.+++|++.
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNa   40 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNA   40 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcc
Confidence            4799999999999999997775 99999999999998664

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.54  E-value=0.00025  Score=68.79  Aligned_cols=96  Identities=18%  Similarity=0.204  Sum_probs=59.4

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEee--
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSIT--   91 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--   91 (368)
                      ..+++|||||+.|+-+|..|+ .|.+|+|+++...+.    .+    ++...........+  .+++++.. .+..+.  
T Consensus       182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~----~~----d~~~~~~l~~~l~~--~GV~i~~~~~v~~v~~~  251 (499)
T PTZ00052        182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLR----GF----DRQCSEKVVEYMKE--QGTLFLEGVVPINIEKM  251 (499)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccc----cC----CHHHHHHHHHHHHH--cCCEEEcCCeEEEEEEc
Confidence            358999999999999999987 599999998743211    11    11111110001111  14555433 222232  


Q ss_pred             -cc-EEEecCCeEEEecEEEEecCCCCCCCCc
Q 017664           92 -DT-EVVTAGGQTFVYDYVVVATGHVESVPKS  121 (368)
Q Consensus        92 -~~-~v~~~~g~~~~~d~lvlAtG~~~~~p~~  121 (368)
                       .. .+.+.+++.+.+|.+++|+|..|+....
T Consensus       252 ~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l  283 (499)
T PTZ00052        252 DDKIKVLFSDGTTELFDTVLYATGRKPDIKGL  283 (499)
T ss_pred             CCeEEEEECCCCEEEcCEEEEeeCCCCCcccc
Confidence             11 4555678889999999999999887653

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.54  E-value=0.00012  Score=51.88  Aligned_cols=34  Identities=38%  Similarity=0.486  Sum_probs=31.0

Q ss_pred             cEEEECCChHHHHHHHHhh-cCCcEEEEcCCCcee
Q 017664           18 KVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFE   51 (368)
Q Consensus        18 ~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~   51 (368)
                      +++|||||+.|+-+|..|+ .+.+|+|+++++.+.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            5899999999999999998 599999999998764

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK07121 hypothetical protein; Validated

Probab=97.54  E-value=0.00011  Score=71.36  Aligned_cols=37  Identities=24%  Similarity=0.320  Sum_probs=33.2

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCcee
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFE   51 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~   51 (368)
                      ..+||||||+|.||++||.+++ .|.+|+||||.+..+
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~g   56 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAG   56 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence            4689999999999999999987 599999999998754

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.54  E-value=8.6e-05  Score=73.38  Aligned_cols=52  Identities=21%  Similarity=0.203  Sum_probs=39.6

Q ss_pred             CCcEEeCCCeeecCCCCeEEecccCCCCc------cchHHHHHHHHHHHHHHHHHHHcC
Q 017664          253 RGRLMVDENLRVRGFKNVFAIGDITDIPE------IKQGYLAQKHALVTAKNLKKLMMG  305 (368)
Q Consensus       253 ~g~i~vd~~~~~~~~~~ifa~GD~~~~~~------~~~~~~a~~~g~~aa~~i~~~l~g  305 (368)
                      .|.|.||.+.++ +.|++||+|+|++...      -.....|.-.|+.|+++++..+.+
T Consensus       355 ~GGi~vd~~~~t-~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa~~~~~  412 (589)
T PRK08641        355 MGGLWVDYDQMT-NIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAVEYIKG  412 (589)
T ss_pred             CCCeEECCCCCe-ECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence            478999999888 6999999999974311      123456888899999998877643

>PRK09126 hypothetical protein; Provisional

Probab=97.53  E-value=0.00084  Score=63.13  Aligned_cols=96  Identities=20%  Similarity=0.328  Sum_probs=68.6

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc------------------------------------c-----
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL------------------------------------E-----  178 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l------------------------------------~-----  178 (368)
                      .+|+|||+|++|+-+|..|.+  .|.+|+++++.+..-                                    +     
T Consensus         4 ~dviIvGgG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~   81 (392)
T PRK09126          4 SDIVVVGAGPAGLSFARSLAG--SGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAK   81 (392)
T ss_pred             ccEEEECcCHHHHHHHHHHHh--CCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEE
Confidence            469999999999999999985  488999998764210                                    0     


Q ss_pred             ----------ccCc---------------hhHHHHHHHH-HcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEE
Q 017664          179 ----------FVGS---------------RASQIALDWL-TSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFM  230 (368)
Q Consensus       179 ----------~~~~---------------~~~~~~~~~l-~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~  230 (368)
                                .++.               .+.+.+.+.+ +..|++++.++++..++.+++  .+.+.+|+++++|++|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~  161 (392)
T PRK09126         82 VLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVA  161 (392)
T ss_pred             EEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEE
Confidence                      0000               0111122233 446899999999998876655  67778888999999999


Q ss_pred             ccCCCCC
Q 017664          231 CTGKAMA  237 (368)
Q Consensus       231 a~G~~p~  237 (368)
                      |.|....
T Consensus       162 AdG~~S~  168 (392)
T PRK09126        162 ADSRFSA  168 (392)
T ss_pred             eCCCCch
Confidence            9998654

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=97.52  E-value=0.00011  Score=74.07  Aligned_cols=41  Identities=27%  Similarity=0.311  Sum_probs=36.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeec
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITW   54 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~   54 (368)
                      ....+|+|||||++||+||+.|. +|++|+|+|+++.+|+..
T Consensus       236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~  277 (808)
T PLN02328        236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRV  277 (808)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcc
Confidence            34689999999999999999997 599999999999887553

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=97.52  E-value=0.0023  Score=61.05  Aligned_cols=132  Identities=19%  Similarity=0.272  Sum_probs=81.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCe-EEEEecCccc----------------------cccc----------CchhH
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKK-VILVHRGPKL----------------------LEFV----------GSRAS  185 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~-v~~i~~~~~~----------------------l~~~----------~~~~~  185 (368)
                      ..+++|||+|++|+-+|..|.++  +.. +.+++++..+                      ++++          .+++.
T Consensus         8 ~~~v~IIGaG~sGlaaa~~L~~~--g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~   85 (443)
T COG2072           8 HTDVAIIGAGQSGLAAAYALKQA--GVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIK   85 (443)
T ss_pred             cccEEEECCCHHHHHHHHHHHHc--CCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHH
Confidence            46799999999999999999975  444 8888887522                      1111          11256


Q ss_pred             HHHHHHHHcCCcE--EEecceeeecccCCC----eEEcCCCcE--EecCEEEEccCCC--CCchhhhccccccccCCCCc
Q 017664          186 QIALDWLTSKKVE--VILNQSVTLNTISDG----LIETSSGET--IDTDCHFMCTGKA--MASSWLRETILKDSLDGRGR  255 (368)
Q Consensus       186 ~~~~~~l~~~gv~--i~~~~~v~~i~~~~~----~v~~~~g~~--i~~d~vi~a~G~~--p~~~~~~~~~l~~~~~~~g~  255 (368)
                      +++.+++++.++.  +..++.|+.+..+++    .|.++++.+  +++|.||+|||.-  |..+-+  .+.   .+..|.
T Consensus        86 ~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~--~G~---~~f~g~  160 (443)
T COG2072          86 DYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDF--AGL---DEFKGR  160 (443)
T ss_pred             HHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCC--CCc---cCCCce
Confidence            7778888876654  444555555444433    788888765  5599999999974  322211  121   112343


Q ss_pred             EEeCC----CeeecCCCCeEEecccCC
Q 017664          256 LMVDE----NLRVRGFKNVFAIGDITD  278 (368)
Q Consensus       256 i~vd~----~~~~~~~~~ifa~GD~~~  278 (368)
                      +.=..    .... ..++|-+||-.++
T Consensus       161 ~~HS~~~~~~~~~-~GKrV~VIG~GaS  186 (443)
T COG2072         161 ILHSADWPNPEDL-RGKRVLVIGAGAS  186 (443)
T ss_pred             EEchhcCCCcccc-CCCeEEEECCCcc
Confidence            32211    1222 4689999998764

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=97.52  E-value=0.00087  Score=62.76  Aligned_cols=94  Identities=17%  Similarity=0.235  Sum_probs=68.4

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCC-CeEEEEecCccccc---------c-------------c-----------------
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPD-KKVILVHRGPKLLE---------F-------------V-----------------  180 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~-~~v~~i~~~~~~l~---------~-------------~-----------------  180 (368)
                      .|+|||+|++|+-+|..|.+  .+ .+|+++++.+..-+         .             .                 
T Consensus         1 dv~IvGaG~aGl~~A~~L~~--~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~   78 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSR--LGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVS   78 (382)
T ss_pred             CEEEECccHHHHHHHHHHhc--CCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEE
Confidence            48999999999999999985  57 89999987532100         0             0                 


Q ss_pred             C-------------------------chhHHHHHHHHHc-CCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEcc
Q 017664          181 G-------------------------SRASQIALDWLTS-KKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCT  232 (368)
Q Consensus       181 ~-------------------------~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~  232 (368)
                      +                         ..+.+.+.+.+++ .|++++.+++++.++.+++  .+.+.+|+++.+|+||.|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~Ad  158 (382)
T TIGR01984        79 DQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAAD  158 (382)
T ss_pred             cCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEec
Confidence            0                         0112334455555 4999999999998876555  6777888899999999999


Q ss_pred             CCCC
Q 017664          233 GKAM  236 (368)
Q Consensus       233 G~~p  236 (368)
                      |...
T Consensus       159 G~~S  162 (382)
T TIGR01984       159 GANS  162 (382)
T ss_pred             CCCh
Confidence            9763

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK05868 hypothetical protein; Validated

Probab=97.52  E-value=0.00074  Score=63.03  Aligned_cols=96  Identities=16%  Similarity=0.143  Sum_probs=68.0

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc-----------------------------------------
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE-----------------------------------------  178 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~-----------------------------------------  178 (368)
                      ++|+|||+|+.|+-+|..|.+  .+.+|+++++.+.+..                                         
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~--~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g   79 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGR--HGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDG   79 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHh--CCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCC
Confidence            479999999999999999885  4788888887642200                                         


Q ss_pred             ----ccC--c---------h---hHHHHHHHHH---cCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCC
Q 017664          179 ----FVG--S---------R---ASQIALDWLT---SKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       179 ----~~~--~---------~---~~~~~~~~l~---~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                          ...  .         .   ....+.+.+.   ..|++++++++++.++.+++  .+.+.+|+++++|+||-|-|..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~  159 (372)
T PRK05868         80 NELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLH  159 (372)
T ss_pred             CEEeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCC
Confidence                000  0         0   0112233332   46899999999998876554  6778899999999999999976


Q ss_pred             CC
Q 017664          236 MA  237 (368)
Q Consensus       236 p~  237 (368)
                      ..
T Consensus       160 S~  161 (372)
T PRK05868        160 SN  161 (372)
T ss_pred             ch
Confidence            43

>PRK07395 L-aspartate oxidase; Provisional

Probab=97.51  E-value=0.00012  Score=71.82  Aligned_cols=37  Identities=27%  Similarity=0.335  Sum_probs=33.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhcCCcEEEEcCCCce
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYF   50 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~g~~v~lie~~~~~   50 (368)
                      ...+||||||+|.||++||..+++|.+|+||||.+..
T Consensus         7 ~~e~DVlVVG~G~AGl~AAi~A~~G~~V~lieK~~~~   43 (553)
T PRK07395          7 PSQFDVLVVGSGAAGLYAALCLPSHLRVGLITKDTLK   43 (553)
T ss_pred             cccCCEEEECccHHHHHHHHHhhcCCCEEEEEccCCC
Confidence            4568999999999999999999889999999998764

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.50  E-value=0.00011  Score=72.52  Aligned_cols=35  Identities=20%  Similarity=0.275  Sum_probs=31.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      ...+||||||+|.|||+||..++ .|.+|+||||..
T Consensus        10 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~   45 (591)
T PRK07057         10 RRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVF   45 (591)
T ss_pred             cccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence            45689999999999999999887 599999999975

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.50  E-value=0.0003  Score=70.64  Aligned_cols=90  Identities=24%  Similarity=0.276  Sum_probs=65.2

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc-------c--ccCchhHHHHHHHHHcCCcEEEecceeeec
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL-------E--FVGSRASQIALDWLTSKKVEVILNQSVTLN  208 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l-------~--~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  208 (368)
                      .+++|+|||+|++|+.+|..|.+  .+.+|+++++.+.+.       |  .++.++.....+.+++.|++++.++.+...
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~--~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~  403 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLAR--NGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKD  403 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCc
Confidence            46899999999999999999985  588999999876532       1  123455555667888999999999876310


Q ss_pred             ccCCCeEEcCCCcEEecCEEEEccCCCC
Q 017664          209 TISDGLIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       209 ~~~~~~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                            +...+ ....+|.||+|+|..+
T Consensus       404 ------i~~~~-~~~~~DavilAtGa~~  424 (654)
T PRK12769        404 ------ISLES-LLEDYDAVFVGVGTYR  424 (654)
T ss_pred             ------CCHHH-HHhcCCEEEEeCCCCC
Confidence                  11111 1246999999999753

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.50  E-value=0.0011  Score=61.78  Aligned_cols=95  Identities=27%  Similarity=0.370  Sum_probs=69.1

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc--cc-----ccC--------------------------------
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL--LE-----FVG--------------------------------  181 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~--l~-----~~~--------------------------------  181 (368)
                      .++|||+|++|.-+|..+.+...+.+|.++++.+..  ..     ...                                
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~   80 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP   80 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence            379999999999999999555678999999876543  00     000                                


Q ss_pred             ------chhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCC
Q 017664          182 ------SRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       182 ------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                            ..+.+.+.+.+++.| .+..++.|..++..++  .+.+.+|+++.++.||-|.|..+
T Consensus        81 Y~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~  142 (374)
T PF05834_consen   81 YCMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSS  142 (374)
T ss_pred             eEEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCccc
Confidence                  122233445555444 5667788998887766  67899999999999999999654

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=97.49  E-value=0.0017  Score=52.57  Aligned_cols=92  Identities=20%  Similarity=0.292  Sum_probs=59.4

Q ss_pred             EEEcCchhHHHHHHHHhhhC---CCCeEEEEecCccc------------------------ccccC-chhH---------
Q 017664          143 LIVGGGPTGVELAGEIAVDF---PDKKVILVHRGPKL------------------------LEFVG-SRAS---------  185 (368)
Q Consensus       143 ~VvG~g~~~~e~a~~l~~~~---~~~~v~~i~~~~~~------------------------l~~~~-~~~~---------  185 (368)
                      +|||+|++|+-++..|.+..   ...+|+++++.+.-                        .+..+ +.+.         
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~   80 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD   80 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence            58999999999999988763   45689999875310                        00000 1111         


Q ss_pred             -----------------HHHH----HHHH--cCCcEEE-ecceeeecccCCC--eEEcCCCcEEecCEEEEccCC
Q 017664          186 -----------------QIAL----DWLT--SKKVEVI-LNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGK  234 (368)
Q Consensus       186 -----------------~~~~----~~l~--~~gv~i~-~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~  234 (368)
                                       +++.    +.++  ..|+++. ...+|..++..++  .+.+.+|..+.+|.||+|+|.
T Consensus        81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen   81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence                             1111    1111  2355543 3457777777655  688899999999999999995

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=97.49  E-value=9.6e-05  Score=66.66  Aligned_cols=62  Identities=13%  Similarity=0.138  Sum_probs=42.5

Q ss_pred             HHHHHHHHHcCCcEEEecceeeeccc--CCC---eE--EcCCCc----EEecCEEEEccCCCCCchhhhcccc
Q 017664          185 SQIALDWLTSKKVEVILNQSVTLNTI--SDG---LI--ETSSGE----TIDTDCHFMCTGKAMASSWLRETIL  246 (368)
Q Consensus       185 ~~~~~~~l~~~gv~i~~~~~v~~i~~--~~~---~v--~~~~g~----~i~~d~vi~a~G~~p~~~~~~~~~l  246 (368)
                      ...+...++..|+++++++.|.+|..  +++   .|  ...++.    .+.++.||+|.|..-.+.+|..+++
T Consensus       196 ~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi  268 (296)
T PF00732_consen  196 TTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI  268 (296)
T ss_dssp             HHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred             hcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence            34455566666999999999999944  333   33  334443    5678999999997755667777766

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK12839 hypothetical protein; Provisional

Probab=97.49  E-value=0.00014  Score=71.60  Aligned_cols=44  Identities=23%  Similarity=0.318  Sum_probs=37.4

Q ss_pred             CcCCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeee
Q 017664           10 AAGLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEIT   53 (368)
Q Consensus        10 ~~~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~   53 (368)
                      +|.+...+||+|||+|.+|++||..++ +|.+|+|+|++..++..
T Consensus         2 ~~~~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~   46 (572)
T PRK12839          2 TPSMTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGA   46 (572)
T ss_pred             CCCcCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence            355566899999999999999999997 59999999999876543

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=97.48  E-value=0.00011  Score=70.89  Aligned_cols=36  Identities=19%  Similarity=0.373  Sum_probs=32.8

Q ss_pred             cEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeee
Q 017664           18 KVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEIT   53 (368)
Q Consensus        18 ~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~   53 (368)
                      +|+|||||++||++|+.|+ +|++|+|+|+++.+|+.
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   37 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGK   37 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCce
Confidence            5899999999999999998 49999999999988754

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.47  E-value=0.00064  Score=65.51  Aligned_cols=93  Identities=19%  Similarity=0.238  Sum_probs=62.2

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc------cCc-------------------------------
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF------VGS-------------------------------  182 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~------~~~-------------------------------  182 (368)
                      ..++|||+|+.|+.+|..+++  .+.+|.++++.+.+...      .+.                               
T Consensus         5 ~DvvVIG~GpaG~~aA~~aa~--~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   82 (471)
T PRK06467          5 TQVVVLGAGPAGYSAAFRAAD--LGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDID   82 (471)
T ss_pred             ceEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHH
Confidence            479999999999999999885  58999999976432100      000                               


Q ss_pred             hhH-----------HHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCC--cEEecCEEEEccCCCCC
Q 017664          183 RAS-----------QIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSG--ETIDTDCHFMCTGKAMA  237 (368)
Q Consensus       183 ~~~-----------~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g--~~i~~d~vi~a~G~~p~  237 (368)
                      .+.           ..+...+++.||+++.++-. .+  +.+  .+...+|  +++.+|.+|+|||.+|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~-~~--~~~~v~v~~~~g~~~~~~~d~lViATGs~p~  149 (471)
T PRK06467         83 KMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGK-FT--GGNTLEVTGEDGKTTVIEFDNAIIAAGSRPI  149 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-Ec--cCCEEEEecCCCceEEEEcCEEEEeCCCCCC
Confidence            010           01123456779999987532 22  233  4555566  47999999999999875

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=97.47  E-value=0.00012  Score=71.28  Aligned_cols=37  Identities=32%  Similarity=0.456  Sum_probs=32.7

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceee
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEI   52 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~   52 (368)
                      ...||||||+| +|++||.+++ .|.+|+||||.+..+.
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg   43 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG   43 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence            47899999999 9999999997 5999999999987553

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.45  E-value=0.00033  Score=70.07  Aligned_cols=90  Identities=21%  Similarity=0.257  Sum_probs=66.9

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------ccCchhHHHHHHHHHcCCcEEEecceeeec
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE---------FVGSRASQIALDWLTSKKVEVILNQSVTLN  208 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~---------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  208 (368)
                      .+++|+|||+|++|+.+|..|++  .+.+|+++++.+.+..         .++....+...+.+++.|+++++++.+.. 
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~--~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~-  385 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILAR--AGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR-  385 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH--cCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC-
Confidence            36899999999999999999985  4789999998875421         23455566667788999999999987631 


Q ss_pred             ccCCCeEEcCCCcEEecCEEEEccCCCC
Q 017664          209 TISDGLIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       209 ~~~~~~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                           .+.+.+ ....+|.||+|+|..+
T Consensus       386 -----~~~~~~-l~~~~DaV~latGa~~  407 (639)
T PRK12809        386 -----DITFSD-LTSEYDAVFIGVGTYG  407 (639)
T ss_pred             -----cCCHHH-HHhcCCEEEEeCCCCC
Confidence                 111111 1346899999999864

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.45  E-value=0.00017  Score=71.17  Aligned_cols=39  Identities=23%  Similarity=0.383  Sum_probs=34.3

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCcee
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFE   51 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~   51 (368)
                      ...+.||||||+|.|||+||..++ .|.+|+|+||.+..+
T Consensus         8 ~~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~g   47 (584)
T PRK12835          8 FDREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFG   47 (584)
T ss_pred             ccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCC
Confidence            445789999999999999999986 599999999998754

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.45  E-value=0.00059  Score=64.71  Aligned_cols=91  Identities=15%  Similarity=0.143  Sum_probs=60.5

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc--------ccC--chhHHHHHHHHHcCCcEEEecceeee
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE--------FVG--SRASQIALDWLTSKKVEVILNQSVTL  207 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~--------~~~--~~~~~~~~~~l~~~gv~i~~~~~v~~  207 (368)
                      .+++|+|||+|++|+.+|..+..+ .+.+|+++++.+.+..        ...  ..+...+.+.+...+++++.+..+-.
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~-~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~  116 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKH-ERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV  116 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHh-cCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC
Confidence            468999999999999999977643 4889999999876532        111  12334444556668888886555421


Q ss_pred             cccCCCeEEcCCCcEEecCEEEEccCCCC
Q 017664          208 NTISDGLIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       208 i~~~~~~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                            .+..+ .-.-.+|.||+|+|..+
T Consensus       117 ------Dvt~e-eL~~~YDAVIlAtGA~~  138 (506)
T PTZ00188        117 ------DLKME-ELRNHYNCVIFCCGASE  138 (506)
T ss_pred             ------ccCHH-HHHhcCCEEEEEcCCCC
Confidence                  01111 11236999999999774

>PRK08071 L-aspartate oxidase; Provisional

Probab=97.44  E-value=0.00014  Score=70.61  Aligned_cols=35  Identities=23%  Similarity=0.400  Sum_probs=32.2

Q ss_pred             CCCcEEEECCChHHHHHHHHhhcCCcEEEEcCCCc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEY   49 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~g~~v~lie~~~~   49 (368)
                      .++||||||+|.|||+||..+++|.+|+|+||.+.
T Consensus         2 ~~~DVlVVG~G~AGl~AAl~a~~g~~V~lveK~~~   36 (510)
T PRK08071          2 PSADVIIIGSGIAALTVAKELCHEYNVIIITKKTK   36 (510)
T ss_pred             CccCEEEECccHHHHHHHHHhhcCCCEEEEeccCC
Confidence            36799999999999999999988999999999875

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.41  E-value=0.00038  Score=69.69  Aligned_cols=90  Identities=17%  Similarity=0.184  Sum_probs=65.6

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc-------c--ccCchhHHHHHHHHHcCCcEEEecceeeec
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL-------E--FVGSRASQIALDWLTSKKVEVILNQSVTLN  208 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l-------~--~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  208 (368)
                      ..++|+|||+|+.|+.+|..|.+  .+.+|+++++.+.+.       +  ..+..+.+...+.+++.|++++.++.+. +
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~--~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~  268 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLR--KGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-R  268 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-C
Confidence            35799999999999999999985  588999999876542       1  1344555666778889999999988642 1


Q ss_pred             ccCCCeEEcCCCcEEecCEEEEccCCCC
Q 017664          209 TISDGLIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       209 ~~~~~~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                      .     +.+.+. ...+|.||+|||..+
T Consensus       269 d-----v~~~~~-~~~~DaVilAtGa~~  290 (652)
T PRK12814        269 D-----ITLEEL-QKEFDAVLLAVGAQK  290 (652)
T ss_pred             c-----cCHHHH-HhhcCEEEEEcCCCC
Confidence            1     111111 235999999999874

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=97.41  E-value=0.0012  Score=61.93  Aligned_cols=93  Identities=19%  Similarity=0.268  Sum_probs=65.7

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-----------------------------c-C---------
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF-----------------------------V-G---------  181 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~-----------------------------~-~---------  181 (368)
                      .|+|||+|++|+-+|..+.+  .+.+|.++++.+.+...                             . +         
T Consensus         1 DviIiGaG~AGl~~A~~la~--~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELAR--PGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTA   78 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHh--CCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCc
Confidence            38999999999999998874  48899999976432100                             0 0         


Q ss_pred             ------chhHHHHHHHHHcCCcEEEecceeeecccC-CC--eEEcCCCcEEecCEEEEccCCCC
Q 017664          182 ------SRASQIALDWLTSKKVEVILNQSVTLNTIS-DG--LIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       182 ------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~-~~--~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                            ..+.+.+.+.+.+.|++++ ..++..+..+ ++  .+.+.+|+++++|.||.|+|..+
T Consensus        79 ~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        79 YGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             eeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence                  1122334455667789887 4467766655 33  57778888999999999999764

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK06753 hypothetical protein; Provisional

Probab=97.41  E-value=0.001  Score=62.15  Aligned_cols=94  Identities=19%  Similarity=0.232  Sum_probs=66.3

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-----------------------------------cCc---
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF-----------------------------------VGS---  182 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~-----------------------------------~~~---  182 (368)
                      +|+|||+|++|+-+|..|.+  .+.+|+++++.+.+...                                   .++   
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~--~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~   79 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQE--QGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGT   79 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCC
Confidence            69999999999999999985  58899999977532100                                   000   


Q ss_pred             h--------------h-HHHHHHHHHc--CCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCC
Q 017664          183 R--------------A-SQIALDWLTS--KKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       183 ~--------------~-~~~~~~~l~~--~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                      .              + ...+.+.|.+  .+.+++++++++.++.+++  .+.+.+|+++++|++|-|-|...
T Consensus        80 ~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S  152 (373)
T PRK06753         80 LLNKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHS  152 (373)
T ss_pred             EEeecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcch
Confidence            0              0 0112233322  2467899999998876655  67788899999999999999664

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.40  E-value=0.00018  Score=71.33  Aligned_cols=35  Identities=23%  Similarity=0.184  Sum_probs=31.2

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      ..+||||||||.|||+||..++ .|.+|+|+||...
T Consensus        11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~   46 (598)
T PRK09078         11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFP   46 (598)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence            3589999999999999999987 4899999999853

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.40  E-value=0.00051  Score=66.35  Aligned_cols=95  Identities=17%  Similarity=0.137  Sum_probs=57.1

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEee--
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSIT--   91 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--   91 (368)
                      ..+++|||||+.|+-+|..|+ .|.+|+|+++...+.        ..++...........+  .+++++.. .+..+.  
T Consensus       180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~--------~~d~~~~~~l~~~L~~--~gV~i~~~~~v~~v~~~  249 (484)
T TIGR01438       180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR--------GFDQDCANKVGEHMEE--HGVKFKRQFVPIKVEQI  249 (484)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEeccccc--------ccCHHHHHHHHHHHHH--cCCEEEeCceEEEEEEc
Confidence            357999999999999999987 599999998742211        0111111110001111  15555443 222332  


Q ss_pred             -cc-EEEecCC---eEEEecEEEEecCCCCCCCC
Q 017664           92 -DT-EVVTAGG---QTFVYDYVVVATGHVESVPK  120 (368)
Q Consensus        92 -~~-~v~~~~g---~~~~~d~lvlAtG~~~~~p~  120 (368)
                       .. .+...++   .++++|.+++|+|..|+...
T Consensus       250 ~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~  283 (484)
T TIGR01438       250 EAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRK  283 (484)
T ss_pred             CCeEEEEEecCCcceEEEeCEEEEEecCCcCCCc
Confidence             11 3444444   47999999999999988764

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK07804 L-aspartate oxidase; Provisional

Probab=97.40  E-value=0.00019  Score=70.35  Aligned_cols=37  Identities=24%  Similarity=0.334  Sum_probs=32.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCce
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYF   50 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~   50 (368)
                      ...+||||||+|.|||+||..++ .|.+|+|+||....
T Consensus        14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~   51 (541)
T PRK07804         14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALD   51 (541)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCC
Confidence            45789999999999999999987 49999999998754

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.39  E-value=0.0027  Score=60.01  Aligned_cols=135  Identities=19%  Similarity=0.238  Sum_probs=84.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc----------------------------------cc-----
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL----------------------------------EF-----  179 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l----------------------------------~~-----  179 (368)
                      .++++|||+|++|+-.|..+.+  .+.++++++|.+.+.                                  |+     
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~--~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~   83 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLR--EGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDP   83 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHH--CCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCc
Confidence            6789999999999999999985  488899988875431                                  00     


Q ss_pred             ---cC-chhHHHHHHHHHcCCc--EEEecceeeecccCC-C--eEEcCCC----cEEecCEEEEccCCC--CCchhhhcc
Q 017664          180 ---VG-SRASQIALDWLTSKKV--EVILNQSVTLNTISD-G--LIETSSG----ETIDTDCHFMCTGKA--MASSWLRET  244 (368)
Q Consensus       180 ---~~-~~~~~~~~~~l~~~gv--~i~~~~~v~~i~~~~-~--~v~~~~g----~~i~~d~vi~a~G~~--p~~~~~~~~  244 (368)
                         .. .++.++++..++..++  .+.+++.+..++..+ +  .|.+.++    ++.-+|.|++|+|.-  |..+.+  .
T Consensus        84 ~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~--~  161 (448)
T KOG1399|consen   84 RYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQI--P  161 (448)
T ss_pred             ccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcC--C
Confidence               01 1345566667777665  577788777777665 4  5655443    366799999999976  443332  2


Q ss_pred             ccccccCCCCcEEeCCCeee---cCCCCeEEecccCC
Q 017664          245 ILKDSLDGRGRLMVDENLRV---RGFKNVFAIGDITD  278 (368)
Q Consensus       245 ~l~~~~~~~g~i~vd~~~~~---~~~~~ifa~GD~~~  278 (368)
                      +.+... -.|.+.-...++.   -..+.|.++|--.+
T Consensus       162 g~~~~~-f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~S  197 (448)
T KOG1399|consen  162 GPGIES-FKGKIIHSHDYKSPEKFRDKVVLVVGCGNS  197 (448)
T ss_pred             CCchhh-cCCcceehhhccCcccccCceEEEECCCcc
Confidence            321111 1232222222221   12568888887664

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.38  E-value=0.0015  Score=61.92  Aligned_cols=96  Identities=17%  Similarity=0.227  Sum_probs=65.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc--------------------------------c--------
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL--------------------------------E--------  178 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l--------------------------------~--------  178 (368)
                      ..+|+|||+|+.|+-+|..|.+  .|.+|+++++.+...                                +        
T Consensus        18 ~~dV~IvGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~   95 (415)
T PRK07364         18 TYDVAIVGGGIVGLTLAAALKD--SGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSD   95 (415)
T ss_pred             ccCEEEECcCHHHHHHHHHHhc--CCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEe
Confidence            4579999999999999999985  578888888654210                                0        


Q ss_pred             -------ccC---------------chhHHHHHHHHHc-CCcEEEecceeeecccCCC--eEEcCC--C-cEEecCEEEE
Q 017664          179 -------FVG---------------SRASQIALDWLTS-KKVEVILNQSVTLNTISDG--LIETSS--G-ETIDTDCHFM  230 (368)
Q Consensus       179 -------~~~---------------~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~--~v~~~~--g-~~i~~d~vi~  230 (368)
                             .++               ..+.+.+.+.+.+ .|++++.++++++++.+++  .+.+.+  + .++++|+||.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIg  175 (415)
T PRK07364         96 ADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVA  175 (415)
T ss_pred             CCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEE
Confidence                   000               0112223344444 3799999999998876655  455543  2 3699999999


Q ss_pred             ccCCCC
Q 017664          231 CTGKAM  236 (368)
Q Consensus       231 a~G~~p  236 (368)
                      |.|...
T Consensus       176 ADG~~S  181 (415)
T PRK07364        176 ADGARS  181 (415)
T ss_pred             eCCCCc
Confidence            999764

>PRK07045 putative monooxygenase; Reviewed

Probab=97.38  E-value=0.0017  Score=61.01  Aligned_cols=95  Identities=22%  Similarity=0.257  Sum_probs=67.7

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc------------------------------c----------
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE------------------------------F----------  179 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~------------------------------~----------  179 (368)
                      .+|+|||+|++|+-+|..|++  .+.+|+++++.+....                              .          
T Consensus         6 ~~V~IiGgGpaGl~~A~~L~~--~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g   83 (388)
T PRK07045          6 VDVLINGSGIAGVALAHLLGA--RGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDK   83 (388)
T ss_pred             eEEEEECCcHHHHHHHHHHHh--cCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCC
Confidence            479999999999999999885  4778888886542100                              0          


Q ss_pred             -------c------C-------chhHHHHHHHHH-cCCcEEEecceeeecccCCC----eEEcCCCcEEecCEEEEccCC
Q 017664          180 -------V------G-------SRASQIALDWLT-SKKVEVILNQSVTLNTISDG----LIETSSGETIDTDCHFMCTGK  234 (368)
Q Consensus       180 -------~------~-------~~~~~~~~~~l~-~~gv~i~~~~~v~~i~~~~~----~v~~~~g~~i~~d~vi~a~G~  234 (368)
                             +      .       ..+.+.+.+.+. ..|++++.+++++.++.+++    .+.+.+|+++.+|++|-|.|.
T Consensus        84 ~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~  163 (388)
T PRK07045         84 ELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGA  163 (388)
T ss_pred             cEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCC
Confidence                   0      0       011222333443 35899999999998876543    477888999999999999997


Q ss_pred             CC
Q 017664          235 AM  236 (368)
Q Consensus       235 ~p  236 (368)
                      ..
T Consensus       164 ~S  165 (388)
T PRK07045        164 RS  165 (388)
T ss_pred             Ch
Confidence            64

>PRK13748 putative mercuric reductase; Provisional

Probab=97.38  E-value=0.00048  Score=68.02  Aligned_cols=94  Identities=18%  Similarity=0.243  Sum_probs=58.2

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeec-
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITD-   92 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   92 (368)
                      ..+++|||+|+.|+-+|..|+ .|.+|+|+++...+..        .++.+.........  ..+++++.. .+..+.. 
T Consensus       270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~--------~d~~~~~~l~~~l~--~~gI~i~~~~~v~~i~~~  339 (561)
T PRK13748        270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFR--------EDPAIGEAVTAAFR--AEGIEVLEHTQASQVAHV  339 (561)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccccc--------cCHHHHHHHHHHHH--HCCCEEEcCCEEEEEEec
Confidence            468999999999999999987 4999999998642210        11111111000111  125555432 4444432 


Q ss_pred             -c--EEEecCCeEEEecEEEEecCCCCCCCC
Q 017664           93 -T--EVVTAGGQTFVYDYVVVATGHVESVPK  120 (368)
Q Consensus        93 -~--~v~~~~g~~~~~d~lvlAtG~~~~~p~  120 (368)
                       .  .+.+.++ .+.+|.+++|+|..|+...
T Consensus       340 ~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~  369 (561)
T PRK13748        340 DGEFVLTTGHG-ELRADKLLVATGRAPNTRS  369 (561)
T ss_pred             CCEEEEEecCC-eEEeCEEEEccCCCcCCCC
Confidence             2  2333344 6999999999999988764

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.38  E-value=0.0015  Score=63.01  Aligned_cols=94  Identities=20%  Similarity=0.191  Sum_probs=59.7

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc------cCc-----------------------------hh
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF------VGS-----------------------------RA  184 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~------~~~-----------------------------~~  184 (368)
                      -.++|||+|+.|+.+|..+++  .+.+|.++++...+...      .+.                             .+
T Consensus         4 ~DvvVIG~GpaG~~AA~~aa~--~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~   81 (466)
T PRK06115          4 YDVVIIGGGPGGYNAAIRAGQ--LGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNL   81 (466)
T ss_pred             ccEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCH
Confidence            369999999999999999885  58999999963321100      000                             00


Q ss_pred             H--------------HHHHHHHHcCCcEEEecceeeecccCCC-eEEcCCCc--EEecCEEEEccCCCCC
Q 017664          185 S--------------QIALDWLTSKKVEVILNQSVTLNTISDG-LIETSSGE--TIDTDCHFMCTGKAMA  237 (368)
Q Consensus       185 ~--------------~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~v~~~~g~--~i~~d~vi~a~G~~p~  237 (368)
                      .              ..+...+++.+|+++.+.-  ++..+.. .+.+.+|+  ++++|.+|+|||.+|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a--~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~  149 (466)
T PRK06115         82 AQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWG--RLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPT  149 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE--EEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCC
Confidence            0              1112334556787776652  2332222 34455664  6999999999999874

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.37  E-value=0.00044  Score=66.70  Aligned_cols=97  Identities=18%  Similarity=0.220  Sum_probs=60.5

Q ss_pred             CCcEEEECCChHHHHHHHHhh----cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEe
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ----SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSI   90 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~----~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   90 (368)
                      ..+++|||||+.|+-+|..+.    .|.+|+|+++.+.+...       .++...........+  .+++++.. .+..+
T Consensus       187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~-------~d~~~~~~l~~~L~~--~GI~i~~~~~v~~i  257 (486)
T TIGR01423       187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRG-------FDSTLRKELTKQLRA--NGINIMTNENPAKV  257 (486)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccc-------cCHHHHHHHHHHHHH--cCCEEEcCCEEEEE
Confidence            468999999999999997553    38999999998764211       111111110111111  24555433 33444


Q ss_pred             ec-----cEEEecCCeEEEecEEEEecCCCCCCCCc
Q 017664           91 TD-----TEVVTAGGQTFVYDYVVVATGHVESVPKS  121 (368)
Q Consensus        91 ~~-----~~v~~~~g~~~~~d~lvlAtG~~~~~p~~  121 (368)
                      ..     ..+.+.++..+++|.+++|+|..|+....
T Consensus       258 ~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l  293 (486)
T TIGR01423       258 TLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTL  293 (486)
T ss_pred             EEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccC
Confidence            31     13555677789999999999999877643

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=97.37  E-value=0.00019  Score=71.26  Aligned_cols=35  Identities=20%  Similarity=0.092  Sum_probs=31.7

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      ..+||||||||.|||+||..++ .|.+|+|+||...
T Consensus        28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~   63 (617)
T PTZ00139         28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFP   63 (617)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCC
Confidence            3689999999999999999987 5999999999875

>PRK14727 putative mercuric reductase; Provisional

Probab=97.37  E-value=0.00053  Score=66.28  Aligned_cols=94  Identities=14%  Similarity=0.186  Sum_probs=57.9

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEee--
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSIT--   91 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--   91 (368)
                      ..+++|||+|+.|+-.|..|+ .|.+|+|+++...+..        ..+...........  ..+++++.. .+..+.  
T Consensus       188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~--------~d~~~~~~l~~~L~--~~GV~i~~~~~V~~i~~~  257 (479)
T PRK14727        188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFR--------EDPLLGETLTACFE--KEGIEVLNNTQASLVEHD  257 (479)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCc--------chHHHHHHHHHHHH--hCCCEEEcCcEEEEEEEe
Confidence            468999999999999999987 5999999997532210        11111110000111  125665533 344443  


Q ss_pred             cc--EEEecCCeEEEecEEEEecCCCCCCCC
Q 017664           92 DT--EVVTAGGQTFVYDYVVVATGHVESVPK  120 (368)
Q Consensus        92 ~~--~v~~~~g~~~~~d~lvlAtG~~~~~p~  120 (368)
                      ..  .+...++ .+.+|.+++|+|..|+...
T Consensus       258 ~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~~  287 (479)
T PRK14727        258 DNGFVLTTGHG-ELRAEKLLISTGRHANTHD  287 (479)
T ss_pred             CCEEEEEEcCC-eEEeCEEEEccCCCCCccC
Confidence            22  3344444 5899999999999987764

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.35  E-value=0.0002  Score=70.82  Aligned_cols=35  Identities=20%  Similarity=0.238  Sum_probs=31.4

Q ss_pred             CCCcEEEECCChHHHHHHHHhhcCCcEEEEcCCCc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEY   49 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~g~~v~lie~~~~   49 (368)
                      ..+||||||||.|||+||..++++.+|+|+||...
T Consensus         4 ~~~DVlVIG~G~AGl~AAl~aa~~~~VilleK~~~   38 (583)
T PRK08205          4 HRYDVVIVGAGGAGMRAAIEAGPRARTAVLTKLYP   38 (583)
T ss_pred             eeccEEEECccHHHHHHHHHHHhCCCEEEEeCCCC
Confidence            46899999999999999999986699999999754

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.34  E-value=0.00023  Score=69.90  Aligned_cols=38  Identities=26%  Similarity=0.358  Sum_probs=33.6

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceee
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEI   52 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~   52 (368)
                      .++||||||+|.+|++||..++ .|.+|+|||+.+.++.
T Consensus         5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG   43 (557)
T PRK12844          5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGG   43 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence            4789999999999999999998 5999999999876553

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=97.34  E-value=0.00022  Score=64.96  Aligned_cols=34  Identities=35%  Similarity=0.595  Sum_probs=31.1

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      +.+|+|||||.+|+++|..|. +|++|+|+|+.+.
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~   36 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRED   36 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence            578999999999999999997 5999999999765

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=97.34  E-value=0.00023  Score=70.77  Aligned_cols=55  Identities=13%  Similarity=0.004  Sum_probs=42.1

Q ss_pred             CchhHHHHHHHHHcCCcEEEecceeeecccC--CC---eEEc---CCCc--EEecCEEEEccCCC
Q 017664          181 GSRASQIALDWLTSKKVEVILNQSVTLNTIS--DG---LIET---SSGE--TIDTDCHFMCTGKA  235 (368)
Q Consensus       181 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~--~~---~v~~---~~g~--~i~~d~vi~a~G~~  235 (368)
                      +..+...+.+.+++.|++++.++.|..+..+  ++   .+..   .+++  ++.+|.||+|+|..
T Consensus       231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaw  295 (627)
T PLN02464        231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPF  295 (627)
T ss_pred             HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHh
Confidence            4467777888899999999999999988765  23   3332   2343  68999999999965

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.33  E-value=0.0002  Score=73.01  Aligned_cols=34  Identities=24%  Similarity=0.524  Sum_probs=30.5

Q ss_pred             CcEEEECCChHHHHHHHHhhc---CCcEEEEcCCCce
Q 017664           17 KKVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYF   50 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~~   50 (368)
                      ++|+|||||||||++|..|++   |++|+|+|+++..
T Consensus         1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~   37 (765)
T PRK08255          1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY   37 (765)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence            479999999999999999974   8999999999863

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.31  E-value=0.00028  Score=69.28  Aligned_cols=40  Identities=18%  Similarity=0.272  Sum_probs=34.8

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeee
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEIT   53 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~   53 (368)
                      -...+||||||+| +|++||..++ .|.+|+||||.+.+|+.
T Consensus        13 ~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~   53 (564)
T PRK12845         13 RDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGS   53 (564)
T ss_pred             CCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCc
Confidence            3458999999999 8999999887 59999999999887754

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.30  E-value=0.00027  Score=70.50  Aligned_cols=35  Identities=23%  Similarity=0.267  Sum_probs=30.9

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      ..+||||||||.|||+||..++ .|.+|+|+|++..
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~   69 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDS   69 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCC
Confidence            3579999999999999999997 5999999998653

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=97.29  E-value=0.00027  Score=70.25  Aligned_cols=34  Identities=21%  Similarity=0.129  Sum_probs=31.0

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      .+||||||+|.|||+||..++ .|.+|+||||...
T Consensus        50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~   84 (635)
T PLN00128         50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP   84 (635)
T ss_pred             ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCC
Confidence            579999999999999999987 5999999999864

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=97.29  E-value=0.00022  Score=70.77  Aligned_cols=45  Identities=18%  Similarity=0.162  Sum_probs=36.7

Q ss_pred             CCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcC
Q 017664          260 ENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMG  305 (368)
Q Consensus       260 ~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g  305 (368)
                      .+++| +.||+||+|||+......++..+..+|+.++.++...+..
T Consensus       389 ~~~~T-~v~glyA~Ge~~~~~~~~l~~~s~~~g~~ag~~~~~~~~~  433 (608)
T PRK06854        389 YNRMT-TVEGLFAAGDVVGGSPHKFSSGSFAEGRIAAKAAVRYILD  433 (608)
T ss_pred             ccccc-CCCCEEEeeecCCCCcchhHHHHHHHHHHHHHHHHHHHHh
Confidence            88998 7999999999986433446777888999999999887754

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.29  E-value=0.00024  Score=65.63  Aligned_cols=45  Identities=16%  Similarity=0.213  Sum_probs=35.3

Q ss_pred             CCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCCC
Q 017664          260 ENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRN  307 (368)
Q Consensus       260 ~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~  307 (368)
                      +.++|+..+++|.+|-+.+...   -..|..||-+|+-|....-.+++
T Consensus       381 ~sLeTkkV~GLF~AGQINGTTG---YEEAAAQGIiAGiNA~~~a~~~~  425 (679)
T KOG2311|consen  381 PSLETKKVQGLFFAGQINGTTG---YEEAAAQGIIAGINASLRASGKP  425 (679)
T ss_pred             hhhhhhhccceEEeeeecCccc---hHHHHhhhhHhhhhhhhhhcCCC
Confidence            4688888999999999987632   24799999999999886555554

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=97.29  E-value=0.00076  Score=57.62  Aligned_cols=95  Identities=23%  Similarity=0.264  Sum_probs=64.6

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecc-----------eeeecc
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQ-----------SVTLNT  209 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~-----------~v~~i~  209 (368)
                      +.+|||||..|+.+|..|+...|..+|.+++.++-+..-   .....+-+++++..|+=...+           .|..+.
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass~vksv---tn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~v~~~~   77 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSV---TNYQKIGQYLEKFDVKEQNCHELGPDFRRFLNDVVTWD   77 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHH---hhHHHHHHHHHhcCccccchhhhcccHHHHHHhhhhhc
Confidence            368999999999999999988899999999877643211   122333444444333211100           122223


Q ss_pred             cCCCeEEcCCCcEEecCEEEEccCCCCCc
Q 017664          210 ISDGLIETSSGETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       210 ~~~~~v~~~~g~~i~~d~vi~a~G~~p~~  238 (368)
                      .+++.+.+.+|+++.++.+.+++|++|-.
T Consensus        78 s~ehci~t~~g~~~ky~kKOG~tg~kPkl  106 (334)
T KOG2755|consen   78 SSEHCIHTQNGEKLKYFKLCLCTGYKPKL  106 (334)
T ss_pred             cccceEEecCCceeeEEEEEEecCCCcce
Confidence            33447899999999999999999999853

>PRK09077 L-aspartate oxidase; Provisional

Probab=97.27  E-value=0.00033  Score=68.62  Aligned_cols=50  Identities=18%  Similarity=0.224  Sum_probs=38.7

Q ss_pred             CCcEEeCCCeeecCCCCeEEecccCCC--Cc-----cchHHHHHHHHHHHHHHHHHHH
Q 017664          253 RGRLMVDENLRVRGFKNVFAIGDITDI--PE-----IKQGYLAQKHALVTAKNLKKLM  303 (368)
Q Consensus       253 ~g~i~vd~~~~~~~~~~ifa~GD~~~~--~~-----~~~~~~a~~~g~~aa~~i~~~l  303 (368)
                      .|.|.+|.+.|+ +.|++||+|+|+..  ..     -.....|.-.|+.|++++....
T Consensus       353 ~GGi~vd~~~~t-~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~  409 (536)
T PRK09077        353 CGGVMVDLHGRT-DLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILSRL  409 (536)
T ss_pred             cCCeeECCCCcc-ccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHHhh
Confidence            477999999998 79999999999742  11     1234568889999999998764

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.27  E-value=0.00033  Score=69.25  Aligned_cols=35  Identities=29%  Similarity=0.263  Sum_probs=31.5

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      ..+||||||+|.|||+||..++ .|.+|+|+||...
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~   41 (588)
T PRK08958          6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFP   41 (588)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence            4679999999999999999987 5999999999864

>PLN02697 lycopene epsilon cyclase

Probab=97.26  E-value=0.002  Score=62.54  Aligned_cols=94  Identities=21%  Similarity=0.225  Sum_probs=66.0

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc----------------------------------------
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF----------------------------------------  179 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~----------------------------------------  179 (368)
                      -.|+|||+|++|+.+|..+.+  .+.+|.++++.......                                        
T Consensus       109 ~DVvIVGaGPAGLalA~~Lak--~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Y  186 (529)
T PLN02697        109 LDLVVIGCGPAGLALAAESAK--LGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAY  186 (529)
T ss_pred             ccEEEECcCHHHHHHHHHHHh--CCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcc
Confidence            479999999999999988885  47888888764211000                                        


Q ss_pred             --c-CchhHHHHHHHHHcCCcEEEecceeeecccCCC--e-EEcCCCcEEecCEEEEccCCCC
Q 017664          180 --V-GSRASQIALDWLTSKKVEVILNQSVTLNTISDG--L-IETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       180 --~-~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~-v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                        . ...+.+.+.+.+.+.|+++ .+++|+.++.+++  . +.+.+|.++.++.||.|+|...
T Consensus       187 g~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        187 GRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS  248 (529)
T ss_pred             cEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence              0 0012244556667789998 5678888876544  2 4567788999999999999764

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.26  E-value=0.00027  Score=69.33  Aligned_cols=52  Identities=15%  Similarity=0.158  Sum_probs=40.1

Q ss_pred             CCcEEeCCCeeecCCCCeEEecccCCCCcc------chHHHHHHHHHHHHHHHHHHHcC
Q 017664          253 RGRLMVDENLRVRGFKNVFAIGDITDIPEI------KQGYLAQKHALVTAKNLKKLMMG  305 (368)
Q Consensus       253 ~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~------~~~~~a~~~g~~aa~~i~~~l~g  305 (368)
                      .|.+.+|.+.|+ ..|++||+|++++....      .....|...|+.|+++++..+.+
T Consensus       348 ~GGi~vd~~~~t-~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~~~~  405 (543)
T PRK06263        348 MGGIRINEDCET-NIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAKNAEN  405 (543)
T ss_pred             cCCEEECCCCcc-cCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHHHhhh
Confidence            477999999998 79999999998753211      12346888999999999887644

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=97.26  E-value=0.0024  Score=62.45  Aligned_cols=92  Identities=20%  Similarity=0.257  Sum_probs=64.0

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc-ccc-----c---------------cc------------------
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP-KLL-----E---------------FV------------------  180 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~-~~l-----~---------------~~------------------  180 (368)
                      -.|+|||||+.|+++|..+++  .|.+|.++++.. .+.     |               .+                  
T Consensus         5 yDVIVVGGGpAG~eAA~~aAR--~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~l   82 (618)
T PRK05192          5 YDVIVVGGGHAGCEAALAAAR--MGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRML   82 (618)
T ss_pred             ceEEEECchHHHHHHHHHHHH--cCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeec
Confidence            469999999999999999885  588999998763 110     0               00                  


Q ss_pred             ---------------Cc-hhHHHHHHHHHcC-CcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCC
Q 017664          181 ---------------GS-RASQIALDWLTSK-KVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGK  234 (368)
Q Consensus       181 ---------------~~-~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~  234 (368)
                                     +. .+...+.+.+++. |++++. ..+..+..+++   .|.+.+|..+.|+.||+|||.
T Consensus        83 n~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q-~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGT  155 (618)
T PRK05192         83 NTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQ-GEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGT  155 (618)
T ss_pred             ccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEE-eEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCc
Confidence                           00 0122334455544 888864 45776655554   578889999999999999994

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.24  E-value=0.003  Score=59.29  Aligned_cols=94  Identities=15%  Similarity=0.223  Sum_probs=66.7

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------------------------------------c-
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE---------------------------------------F-  179 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~---------------------------------------~-  179 (368)
                      .+|+|||+|+.|+-+|..|.+  .+.+|+++++.+....                                       . 
T Consensus         8 ~dViIVGaG~~Gl~~A~~L~~--~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~   85 (388)
T PRK07494          8 TDIAVIGGGPAGLAAAIALAR--AGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGR   85 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHhc--CCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCC
Confidence            479999999999999999885  4788999987632100                                       0 


Q ss_pred             --------c---------------CchhHHHHHHHHHcC-CcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccC
Q 017664          180 --------V---------------GSRASQIALDWLTSK-KVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTG  233 (368)
Q Consensus       180 --------~---------------~~~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G  233 (368)
                              +               ...+.+.+.+.+++. ++. +.++++..++.+++  .+.+++|+++++|.||.|.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG  164 (388)
T PRK07494         86 LIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDEVTVTLADGTTLSARLVVGADG  164 (388)
T ss_pred             CCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecC
Confidence                    0               001123344555555 455 77888988876555  67778888999999999999


Q ss_pred             CCC
Q 017664          234 KAM  236 (368)
Q Consensus       234 ~~p  236 (368)
                      ...
T Consensus       165 ~~S  167 (388)
T PRK07494        165 RNS  167 (388)
T ss_pred             CCc
Confidence            864

>PLN03000 amine oxidase

Probab=97.23  E-value=0.00038  Score=70.34  Aligned_cols=42  Identities=19%  Similarity=0.223  Sum_probs=37.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeecc
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWA   55 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~   55 (368)
                      ....+|+|||||++|+++|..|++ |++|+|+|+++..|+...
T Consensus       182 ~~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~  224 (881)
T PLN03000        182 SSKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVY  224 (881)
T ss_pred             CCCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcc
Confidence            346899999999999999999985 999999999999886543

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.23  E-value=0.00032  Score=69.31  Aligned_cols=52  Identities=12%  Similarity=0.150  Sum_probs=39.0

Q ss_pred             CCcEEeCCCeeecC-----CCCeEEecccCCC--Cc-----cchHHHHHHHHHHHHHHHHHHHc
Q 017664          253 RGRLMVDENLRVRG-----FKNVFAIGDITDI--PE-----IKQGYLAQKHALVTAKNLKKLMM  304 (368)
Q Consensus       253 ~g~i~vd~~~~~~~-----~~~ifa~GD~~~~--~~-----~~~~~~a~~~g~~aa~~i~~~l~  304 (368)
                      .|.+.+|.+.|+.+     .|++||+|+|++.  ..     -.....|.-.|+.|++++++.+.
T Consensus       352 ~GGi~vd~~~~t~~~~g~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~~~~  415 (577)
T PRK06069        352 MGGIHTDVYGRVLTADGEWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAEYAL  415 (577)
T ss_pred             CCCceECCCCcCcCCCCCEeCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence            47789999999832     8999999999752  11     12335678889999999887764

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=97.23  E-value=0.0023  Score=62.80  Aligned_cols=95  Identities=26%  Similarity=0.393  Sum_probs=66.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc-----------------------------------------
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL-----------------------------------------  177 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l-----------------------------------------  177 (368)
                      ..+|+|||+|++|+-+|..|.+  .+.+|+++++.+.+.                                         
T Consensus        10 ~~dV~IVGaGp~Gl~lA~~L~~--~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~   87 (538)
T PRK06183         10 DTDVVIVGAGPVGLTLANLLGQ--YGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAK   87 (538)
T ss_pred             CCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCC
Confidence            4579999999999999999985  478888888764210                                         


Q ss_pred             ----cccC-----------------chhHHHHHHHHHc-CCcEEEecceeeecccCCC--eEEcC--CC--cEEecCEEE
Q 017664          178 ----EFVG-----------------SRASQIALDWLTS-KKVEVILNQSVTLNTISDG--LIETS--SG--ETIDTDCHF  229 (368)
Q Consensus       178 ----~~~~-----------------~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~--~v~~~--~g--~~i~~d~vi  229 (368)
                          ..++                 +.+.+.+.+.+++ .|++++.+++++.++.+++  .+.+.  +|  +++++|+||
T Consensus        88 g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vV  167 (538)
T PRK06183         88 GRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVV  167 (538)
T ss_pred             CCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEE
Confidence                0000                 0111223344444 4999999999999987665  44443  56  479999999


Q ss_pred             EccCCC
Q 017664          230 MCTGKA  235 (368)
Q Consensus       230 ~a~G~~  235 (368)
                      -|.|..
T Consensus       168 gADG~~  173 (538)
T PRK06183        168 GCDGAN  173 (538)
T ss_pred             ecCCCc
Confidence            999975

>TIGR02462 pyranose_ox pyranose oxidase

Probab=97.22  E-value=0.00032  Score=67.90  Aligned_cols=38  Identities=16%  Similarity=0.057  Sum_probs=34.5

Q ss_pred             CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeec
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITW   54 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~   54 (368)
                      +||+|||+||+|+.+|+.|. +|++|++||++...+..|
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~   39 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK   39 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence            59999999999999999998 599999999999887555

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=97.21  E-value=0.0011  Score=61.04  Aligned_cols=65  Identities=11%  Similarity=0.044  Sum_probs=52.0

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCCCCCc-hhhhcccc
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGKAMAS-SWLRETIL  246 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~~p~~-~~~~~~~l  246 (368)
                      .+++..+.+-+++.|-+|.+...|++|..+++   +|.+.||+++.+..|+.-++..-.. .++..+.+
T Consensus       264 Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~e~L  332 (561)
T KOG4254|consen  264 GAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPGEAL  332 (561)
T ss_pred             hHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCCccC
Confidence            36778888999999999999999999988877   8999999999998888877654222 44554444

>PTZ00058 glutathione reductase; Provisional

Probab=97.21  E-value=0.00078  Score=65.98  Aligned_cols=97  Identities=13%  Similarity=0.182  Sum_probs=59.2

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeecc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITDT   93 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   93 (368)
                      ..+++|||||+.|+-+|..|+ .|.+|+++++.+.+...       .++...........+  .+++++.. .+..++..
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~-------~d~~i~~~l~~~L~~--~GV~i~~~~~V~~I~~~  307 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRK-------FDETIINELENDMKK--NNINIITHANVEEIEKV  307 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccccc-------CCHHHHHHHHHHHHH--CCCEEEeCCEEEEEEec
Confidence            578999999999999999987 49999999998754211       111111100001111  14554432 23334321


Q ss_pred             -----EEEe-cCCeEEEecEEEEecCCCCCCCCc
Q 017664           94 -----EVVT-AGGQTFVYDYVVVATGHVESVPKS  121 (368)
Q Consensus        94 -----~v~~-~~g~~~~~d~lvlAtG~~~~~p~~  121 (368)
                           .+.. .+++.+++|.|++|+|..|+....
T Consensus       308 ~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L  341 (561)
T PTZ00058        308 KEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDL  341 (561)
T ss_pred             CCCcEEEEECCCCEEEECCEEEECcCCCCCcccc
Confidence                 2222 234579999999999999876654

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.20  E-value=0.00094  Score=64.26  Aligned_cols=95  Identities=24%  Similarity=0.279  Sum_probs=57.3

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEE-EeEEEEeec-
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIV-VSTAVSITD-   92 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-   92 (368)
                      ..+++|||+|+.|+.+|..|+ .|.+|+++++.+.+...       ..+...........   ..++++ ...+..++. 
T Consensus       169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-------~d~~~~~~~~~~l~---~~I~i~~~~~v~~i~~~  238 (460)
T PRK06292        169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL-------EDPEVSKQAQKILS---KEFKIKLGAKVTSVEKS  238 (460)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-------hhHHHHHHHHHHHh---hccEEEcCCEEEEEEEc
Confidence            468999999999999999987 49999999998765311       01111000000000   013332 123333321 


Q ss_pred             -c-EEE--e--cCCeEEEecEEEEecCCCCCCCC
Q 017664           93 -T-EVV--T--AGGQTFVYDYVVVATGHVESVPK  120 (368)
Q Consensus        93 -~-~v~--~--~~g~~~~~d~lvlAtG~~~~~p~  120 (368)
                       + .+.  .  .++..+++|.+++|+|..|+.+.
T Consensus       239 ~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  272 (460)
T PRK06292        239 GDEKVEELEKGGKTETIEADYVLVATGRRPNTDG  272 (460)
T ss_pred             CCceEEEEEcCCceEEEEeCEEEEccCCccCCCC
Confidence             1 232  2  23357999999999999998874

>PRK02106 choline dehydrogenase; Validated

Probab=97.20  E-value=0.0004  Score=68.46  Aligned_cols=59  Identities=8%  Similarity=0.033  Sum_probs=42.5

Q ss_pred             HHHHHcCCcEEEecceeeecccCCC---eEEc--CCC--cEEecCEEEEccCCCCCchhhhccccc
Q 017664          189 LDWLTSKKVEVILNQSVTLNTISDG---LIET--SSG--ETIDTDCHFMCTGKAMASSWLRETILK  247 (368)
Q Consensus       189 ~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~--~~g--~~i~~d~vi~a~G~~p~~~~~~~~~l~  247 (368)
                      ....++.|+++++++.|.+|..+++   .|+.  .++  ..+.++.||+|+|..-.+.+|..++++
T Consensus       208 ~~a~~~~nl~i~~~a~V~rI~~~~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG  273 (560)
T PRK02106        208 DPALKRPNLTIVTHALTDRILFEGKRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIG  273 (560)
T ss_pred             ccccCCCCcEEEcCCEEEEEEEeCCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCCC
Confidence            3344567899999999999987654   4443  222  246799999999987666777777764

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.19  E-value=0.0012  Score=65.20  Aligned_cols=90  Identities=23%  Similarity=0.327  Sum_probs=64.0

Q ss_pred             hcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------ccCchhHHHHHHHHHcCCcEEEeccee-e
Q 017664          137 KSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE---------FVGSRASQIALDWLTSKKVEVILNQSV-T  206 (368)
Q Consensus       137 ~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~---------~~~~~~~~~~~~~l~~~gv~i~~~~~v-~  206 (368)
                      ..+++|+|||+|++|+.+|..+.+  .+.+|+++++.+.+..         .++.+....-.+.+++.|++++.++.+ .
T Consensus       135 ~~g~~V~VIGaGpaGL~aA~~l~~--~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~  212 (564)
T PRK12771        135 DTGKRVAVIGGGPAGLSAAYHLRR--MGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGE  212 (564)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECC
Confidence            357899999999999999999885  4788999997765421         123344555566788899999988765 3


Q ss_pred             ecccCCCeEEcCCCcEEecCEEEEccCCCC
Q 017664          207 LNTISDGLIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       207 ~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                      .+..+  .  +    ...+|.+|+|+|..+
T Consensus       213 ~~~~~--~--~----~~~~D~Vi~AtG~~~  234 (564)
T PRK12771        213 DITLE--Q--L----EGEFDAVFVAIGAQL  234 (564)
T ss_pred             cCCHH--H--H----HhhCCEEEEeeCCCC
Confidence            22111  0  1    124899999999764

>PRK08275 putative oxidoreductase; Provisional

Probab=97.18  E-value=0.00035  Score=68.72  Aligned_cols=51  Identities=20%  Similarity=0.307  Sum_probs=40.6

Q ss_pred             CcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCC
Q 017664          254 GRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGR  306 (368)
Q Consensus       254 g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~  306 (368)
                      |.|.||.+++| +.|++||+|||+..+ ......|.-.|+.|+.++..++.+.
T Consensus       357 Ggi~~d~~~~t-~i~gl~a~Ge~~~~~-~~~~~~~~~~G~~a~~~~~~~~~~~  407 (554)
T PRK08275        357 SGVWVNEKAET-TVPGLYAAGDMASVP-HNYMLGAFTYGWFAGENAAEYVAGR  407 (554)
T ss_pred             CcEEECCCCcc-CCCCEEECcccCCch-hHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            67999999999 799999999997533 2345568888999999988776543

>PRK13984 putative oxidoreductase; Provisional

Probab=97.17  E-value=0.0011  Score=66.00  Aligned_cols=89  Identities=24%  Similarity=0.244  Sum_probs=64.8

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------ccCchhHHHHHHHHHcCCcEEEecceeeec
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE---------FVGSRASQIALDWLTSKKVEVILNQSVTLN  208 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~---------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  208 (368)
                      ..++++|||+|+.|+.+|..|.+  .+.+|+++++.+....         ..+.++.....+.+++.|++++.++.+.. 
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~--~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-  358 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLAT--MGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGK-  358 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCC-
Confidence            47889999999999999999985  5889999988765321         12334445556788899999999987732 


Q ss_pred             ccCCCeEEcCCCcEEecCEEEEccCCC
Q 017664          209 TISDGLIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       209 ~~~~~~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      .     +..++ ...++|.+|+|||..
T Consensus       359 ~-----~~~~~-~~~~yD~vilAtGa~  379 (604)
T PRK13984        359 D-----IPLEE-LREKHDAVFLSTGFT  379 (604)
T ss_pred             c-----CCHHH-HHhcCCEEEEEcCcC
Confidence            1     11111 135799999999975

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.16  E-value=0.00094  Score=63.39  Aligned_cols=89  Identities=22%  Similarity=0.273  Sum_probs=68.2

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------ccCchhHHHHHHHHHcCCcEEEecceeeec
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE---------FVGSRASQIALDWLTSKKVEVILNQSVTLN  208 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~---------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  208 (368)
                      .+++|.|||+||.|+.+|..|++  .+..|+++++.+....         ..+.++.+...+.|++.|++|+.++.+-. 
T Consensus       122 tg~~VaviGaGPAGl~~a~~L~~--~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~-  198 (457)
T COG0493         122 TGKKVAVIGAGPAGLAAADDLSR--AGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR-  198 (457)
T ss_pred             CCCEEEEECCCchHhhhHHHHHh--CCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC-
Confidence            36999999999999999999995  5899999988765421         24667888899999999999999997641 


Q ss_pred             ccCCCeEEcCCCcEEecCEEEEccCCC
Q 017664          209 TISDGLIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       209 ~~~~~~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                           .+.+++ ..-++|.+++++|..
T Consensus       199 -----~it~~~-L~~e~Dav~l~~G~~  219 (457)
T COG0493         199 -----DITLEE-LLKEYDAVFLATGAG  219 (457)
T ss_pred             -----cCCHHH-HHHhhCEEEEecccc
Confidence                 011111 123459999999965

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.16  E-value=0.0029  Score=52.85  Aligned_cols=95  Identities=20%  Similarity=0.220  Sum_probs=65.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEe--------------------cCccccc-ccCchhHHHHHHHHHcCCc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVH--------------------RGPKLLE-FVGSRASQIALDWLTSKKV  197 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~--------------------~~~~~l~-~~~~~~~~~~~~~l~~~gv  197 (368)
                      ..+++|||+|+.+.-.|.++.+..  .+-.+++                    .-+.|.. -..+++.+.++++.++.|.
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaarae--lkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt   85 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAE--LKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGT   85 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcc--cCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcc
Confidence            458999999999999998877532  2222222                    1122211 2356888999999999999


Q ss_pred             EEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCCC
Q 017664          198 EVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMA  237 (368)
Q Consensus       198 ~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~  237 (368)
                      ++++.+ |.++..+..  .+.+ +.+.+.+|.||+|||....
T Consensus        86 ~i~tEt-Vskv~~sskpF~l~t-d~~~v~~~avI~atGAsAk  125 (322)
T KOG0404|consen   86 EIITET-VSKVDLSSKPFKLWT-DARPVTADAVILATGASAK  125 (322)
T ss_pred             eeeeee-hhhccccCCCeEEEe-cCCceeeeeEEEeccccee
Confidence            999765 555665555  4444 4457999999999997654

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.13  E-value=0.0037  Score=65.69  Aligned_cols=98  Identities=21%  Similarity=0.211  Sum_probs=66.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc----------c-CchhHHHHHHHHHcC-CcEEEecceee
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF----------V-GSRASQIALDWLTSK-KVEVILNQSVT  206 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~----------~-~~~~~~~~~~~l~~~-gv~i~~~~~v~  206 (368)
                      ..+|+|||+|+.|+..|..+.+  .+.+|++++..+.+...          . ..++...+.+.+++. ++++++++.|.
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar--~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~  240 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAAR--AGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAF  240 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEE
Confidence            4689999999999999999885  68899999987654221          0 112334455666655 59999999887


Q ss_pred             ecccCCC--eEE-c--------CC---C--cEEecCEEEEccCCCCCc
Q 017664          207 LNTISDG--LIE-T--------SS---G--ETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       207 ~i~~~~~--~v~-~--------~~---g--~~i~~d~vi~a~G~~p~~  238 (368)
                      .+...+.  .+. .        ..   +  .++.+|.||+|||..+..
T Consensus       241 ~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~  288 (985)
T TIGR01372       241 GYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERP  288 (985)
T ss_pred             EEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcC
Confidence            6643221  110 0        00   1  268999999999988653

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR00551 nadB L-aspartate oxidase

Probab=97.13  E-value=0.00047  Score=66.73  Aligned_cols=50  Identities=16%  Similarity=0.188  Sum_probs=38.1

Q ss_pred             CCcEEeCCCeeecCCCCeEEecccCC-C-Cc-----cchHHHHHHHHHHHHHHHHHHH
Q 017664          253 RGRLMVDENLRVRGFKNVFAIGDITD-I-PE-----IKQGYLAQKHALVTAKNLKKLM  303 (368)
Q Consensus       253 ~g~i~vd~~~~~~~~~~ifa~GD~~~-~-~~-----~~~~~~a~~~g~~aa~~i~~~l  303 (368)
                      .|.|.||.+.|+ +.||+||+|+|+. . ..     -.....+.-.|+.|++++....
T Consensus       333 ~GGi~vd~~~~t-~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~~  389 (488)
T TIGR00551       333 CGGISVDDHGRT-TVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISRRP  389 (488)
T ss_pred             cCCEEECCCCcc-cCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHhhc
Confidence            478999999998 7999999999963 2 11     1233567888999999987653

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=97.12  E-value=0.00046  Score=69.00  Aligned_cols=53  Identities=13%  Similarity=0.219  Sum_probs=39.7

Q ss_pred             CCcEEeCCCeeecCCCCeEEecccCCCC--cc-----chHHHHHHHHHHHHHHHHHHHcC
Q 017664          253 RGRLMVDENLRVRGFKNVFAIGDITDIP--EI-----KQGYLAQKHALVTAKNLKKLMMG  305 (368)
Q Consensus       253 ~g~i~vd~~~~~~~~~~ifa~GD~~~~~--~~-----~~~~~a~~~g~~aa~~i~~~l~g  305 (368)
                      -|.|.||.+.|+.+.|++||+|+|++..  ..     .....+.-.|+.|+++++..+.+
T Consensus       372 mGGi~vd~~~~t~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa~~~~~  431 (657)
T PRK08626        372 MGGIRTNPTGESYGLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVADFCLG  431 (657)
T ss_pred             cCCceECCCCCCcccCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4779999999984599999999997521  11     12356788899999998877643

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.12  E-value=0.0043  Score=58.16  Aligned_cols=96  Identities=15%  Similarity=0.216  Sum_probs=67.3

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc--cc------------c-c-------------cc-----------
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP--KL------------L-E-------------FV-----------  180 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~--~~------------l-~-------------~~-----------  180 (368)
                      .+|+|||+|+.|+-+|..|.+  .+.+|+++++.+  .+            + +             .+           
T Consensus         4 ~dv~IvGgG~aGl~~A~~L~~--~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~   81 (384)
T PRK08849          4 YDIAVVGGGMVGAATALGFAK--QGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRL   81 (384)
T ss_pred             ccEEEECcCHHHHHHHHHHHh--CCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceE
Confidence            369999999999999999985  578999998653  00            0 0             00           


Q ss_pred             ------------C-ch--------------hHHHHHHHHHc-CCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEE
Q 017664          181 ------------G-SR--------------ASQIALDWLTS-KKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFM  230 (368)
Q Consensus       181 ------------~-~~--------------~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~  230 (368)
                                  + ..              +...+.+.+++ .|++++.++++++++.+++  .+.+.+|+++++|++|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIg  161 (384)
T PRK08849         82 ETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIG  161 (384)
T ss_pred             EEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEE
Confidence                        0 00              00011222333 4799999999998876655  67888999999999999


Q ss_pred             ccCCCCC
Q 017664          231 CTGKAMA  237 (368)
Q Consensus       231 a~G~~p~  237 (368)
                      |.|....
T Consensus       162 ADG~~S~  168 (384)
T PRK08849        162 ADGANSQ  168 (384)
T ss_pred             ecCCCch
Confidence            9998754

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=97.12  E-value=0.00063  Score=62.16  Aligned_cols=41  Identities=24%  Similarity=0.330  Sum_probs=34.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhc---CCcEEEEcCCCceeeec
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYFEITW   54 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~~~~~~   54 (368)
                      ...++|+|+|||.+||++|++|++   ...|+|+|..+..|+..
T Consensus         9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwi   52 (491)
T KOG1276|consen    9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWI   52 (491)
T ss_pred             eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccccee
Confidence            345799999999999999999974   55678899999988553

>PLN02815 L-aspartate oxidase

Probab=97.11  E-value=0.0005  Score=67.80  Aligned_cols=50  Identities=12%  Similarity=0.035  Sum_probs=37.8

Q ss_pred             CCcEEeCCCeeecCCCCeEEecccCCC--Cc-----cchHHHHHHHHHHHHHHHHHHH
Q 017664          253 RGRLMVDENLRVRGFKNVFAIGDITDI--PE-----IKQGYLAQKHALVTAKNLKKLM  303 (368)
Q Consensus       253 ~g~i~vd~~~~~~~~~~ifa~GD~~~~--~~-----~~~~~~a~~~g~~aa~~i~~~l  303 (368)
                      -|.+.+|.+.|| +.||+||+|+|++.  ..     -.....+.-.|+.|++++...+
T Consensus       377 ~GGi~vD~~~~t-~IpGLyAaGE~a~~G~hGanrl~gnsl~e~lvfGr~Ag~~aa~~~  433 (594)
T PLN02815        377 CGGVRTGLQGET-NVQGLYAAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHM  433 (594)
T ss_pred             CCCeeECCCCce-ecCCEEecccccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHh
Confidence            478999999998 79999999999742  11     1233567788899998887654

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=97.10  E-value=0.0056  Score=51.36  Aligned_cols=97  Identities=20%  Similarity=0.143  Sum_probs=61.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-------c-------------------------------
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF-------V-------------------------------  180 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~-------~-------------------------------  180 (368)
                      ...++|||+|++|+-+|..|++.  +.+|.+++++..+...       +                               
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~--g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d   94 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKA--GLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVAD   94 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHH--TS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-
T ss_pred             cCCEEEECCChhHHHHHHHHHHC--CCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEc
Confidence            46799999999999999999975  8999999987543110       0                               


Q ss_pred             CchhHHHHHHHHHcCCcEEEecceeeecccCC-C---eEEc------CCC-----cEEecCEEEEccCCCCC
Q 017664          181 GSRASQIALDWLTSKKVEVILNQSVTLNTISD-G---LIET------SSG-----ETIDTDCHFMCTGKAMA  237 (368)
Q Consensus       181 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~---~v~~------~~g-----~~i~~d~vi~a~G~~p~  237 (368)
                      ..++...+....-+.|++++..+.+..+-..+ +   ++..      ..|     -.+++..||-|||....
T Consensus        95 ~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~  166 (230)
T PF01946_consen   95 SVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAE  166 (230)
T ss_dssp             HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSS
T ss_pred             HHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchH
Confidence            01222223444455899999999998776555 3   2222      122     38999999999997754

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=97.09  E-value=0.00049  Score=67.97  Aligned_cols=45  Identities=16%  Similarity=0.116  Sum_probs=34.0

Q ss_pred             CCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcC
Q 017664          260 ENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMG  305 (368)
Q Consensus       260 ~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g  305 (368)
                      .+.+| +.|++||+|||+......++..+.-+|.+++.++...+..
T Consensus       400 ~~~~T-~i~gLyA~Ge~~~~~~h~l~~nsl~eg~~ag~~a~~~~~~  444 (614)
T TIGR02061       400 YNRMT-TVEGLFTCGDGVGASPHKFSSGSFTEGRIAAKAAVRWILD  444 (614)
T ss_pred             cCCcc-ccCCEEeceecccCcchhhHHhHHHHHHHHHHHHHHHHHh
Confidence            55667 7999999999976433346667777899999888877643

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=97.09  E-value=0.002  Score=62.14  Aligned_cols=66  Identities=23%  Similarity=0.173  Sum_probs=50.7

Q ss_pred             EEEEecCcccccccCc-hhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCCCC
Q 017664          167 VILVHRGPKLLEFVGS-RASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       167 v~~i~~~~~~l~~~~~-~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                      -.++.+.+..   +|| .+...+....++.|+.++.++.|+++....+   .|.+.-| .+++..++-|+|+-.
T Consensus       174 g~Ly~P~DG~---~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWA  243 (856)
T KOG2844|consen  174 GGLYSPGDGV---MDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWA  243 (856)
T ss_pred             eeeecCCCcc---cCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHH
Confidence            3445554443   344 4456777888999999999999999987654   7889888 599999999999763

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.09  E-value=0.0052  Score=57.81  Aligned_cols=97  Identities=22%  Similarity=0.219  Sum_probs=67.3

Q ss_pred             CeEEEEcCchhHHHHHHHHhhh-CCCCeEEEEecCc-c-------------c-------------ccc------------
Q 017664          140 NSVLIVGGGPTGVELAGEIAVD-FPDKKVILVHRGP-K-------------L-------------LEF------------  179 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~-~~~~~v~~i~~~~-~-------------~-------------l~~------------  179 (368)
                      .+|+|||+|+.|+-+|..|.+. ..+.+|+++++.. .             +             .+.            
T Consensus         4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~   83 (395)
T PRK05732          4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHIH   83 (395)
T ss_pred             CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEEE
Confidence            4699999999999999998842 1288999999831 1             0             000            


Q ss_pred             -cC-------------------------chhHHHHHHHHHc-CCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEE
Q 017664          180 -VG-------------------------SRASQIALDWLTS-KKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFM  230 (368)
Q Consensus       180 -~~-------------------------~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~  230 (368)
                       .+                         ..+.+.+.+.+++ .|++++.++++..+..+++  .+.+.+|+++.+|.+|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~  163 (395)
T PRK05732         84 VSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVA  163 (395)
T ss_pred             EecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEE
Confidence             00                         0011223334444 5799999999988876554  57778888899999999


Q ss_pred             ccCCCC
Q 017664          231 CTGKAM  236 (368)
Q Consensus       231 a~G~~p  236 (368)
                      |.|...
T Consensus       164 AdG~~S  169 (395)
T PRK05732        164 ADGSHS  169 (395)
T ss_pred             ecCCCh
Confidence            999764

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=97.08  E-value=0.0054  Score=57.96  Aligned_cols=96  Identities=17%  Similarity=0.330  Sum_probs=68.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC-cc-------------c-------c------ccc-----------
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRG-PK-------------L-------L------EFV-----------  180 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~-~~-------------~-------l------~~~-----------  180 (368)
                      ..+|+|||+|+.|+-+|..|.+  .|.+|+++++. +.             +       +      +.+           
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~--~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~   81 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKE--SDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAM   81 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHh--CCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEE
Confidence            3579999999999999999885  58899999874 10             0       0      000           


Q ss_pred             ---Cc-------------------------hhHHHHHHHHHc-CCcEEEecceeeecccCCC--eEEcCCCcEEecCEEE
Q 017664          181 ---GS-------------------------RASQIALDWLTS-KKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHF  229 (368)
Q Consensus       181 ---~~-------------------------~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi  229 (368)
                         +.                         .+.+.+.+.+.+ .|++++.+++++.++.+++  .+.+.+|+++.+|++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvI  161 (405)
T PRK08850         82 EVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVV  161 (405)
T ss_pred             EEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEE
Confidence               00                         011223344444 4799999999998876554  6788899999999999


Q ss_pred             EccCCCC
Q 017664          230 MCTGKAM  236 (368)
Q Consensus       230 ~a~G~~p  236 (368)
                      .|.|...
T Consensus       162 gADG~~S  168 (405)
T PRK08850        162 GADGANS  168 (405)
T ss_pred             EeCCCCC
Confidence            9999753

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.07  E-value=0.0036  Score=59.35  Aligned_cols=95  Identities=22%  Similarity=0.217  Sum_probs=64.0

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-----cCc---------------------------------
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF-----VGS---------------------------------  182 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~-----~~~---------------------------------  182 (368)
                      +|+|||+|..|+-+|..|.+. .+.+|+++++.+.+.+.     +.+                                 
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~-g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~   80 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKH-SHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEW   80 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhc-CCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEE
Confidence            699999999999999999852 23589999987542100     000                                 


Q ss_pred             ---h-----------------h-HHHHHHHHHc--CCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCC
Q 017664          183 ---R-----------------A-SQIALDWLTS--KKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       183 ---~-----------------~-~~~~~~~l~~--~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                         .                 + ...+.+.|.+  .+..++.++++..++.+++  .+.+.+|+++++|.||.|.|...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S  159 (414)
T TIGR03219        81 RNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKS  159 (414)
T ss_pred             EecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccH
Confidence               0                 0 0112222221  1456778888888876554  67788898999999999999653

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK06185 hypothetical protein; Provisional

Probab=97.05  E-value=0.0061  Score=57.62  Aligned_cols=96  Identities=20%  Similarity=0.232  Sum_probs=65.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc----------------------------c------------
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL----------------------------E------------  178 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l----------------------------~------------  178 (368)
                      ..+|+|||+|++|+-+|..|++  .+.+|+++++.+...                            .            
T Consensus         6 ~~dV~IvGgG~~Gl~~A~~La~--~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~   83 (407)
T PRK06185          6 TTDCCIVGGGPAGMMLGLLLAR--AGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIG   83 (407)
T ss_pred             cccEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEEC
Confidence            4579999999999999999885  478888888753210                            0            


Q ss_pred             c-------c--------------CchhHHHHHHHHHc-CCcEEEecceeeecccCCCe---E--EcCCCc-EEecCEEEE
Q 017664          179 F-------V--------------GSRASQIALDWLTS-KKVEVILNQSVTLNTISDGL---I--ETSSGE-TIDTDCHFM  230 (368)
Q Consensus       179 ~-------~--------------~~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~---v--~~~~g~-~i~~d~vi~  230 (368)
                      .       +              ...+.+.+.+.+++ .|++++.++.+..+..+++.   +  .+.+|+ ++.+|.+|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~  163 (407)
T PRK06185         84 GRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVG  163 (407)
T ss_pred             CeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEE
Confidence            0       0              00112233444444 48999999999988766552   3  345664 799999999


Q ss_pred             ccCCCC
Q 017664          231 CTGKAM  236 (368)
Q Consensus       231 a~G~~p  236 (368)
                      |.|...
T Consensus       164 AdG~~S  169 (407)
T PRK06185        164 ADGRHS  169 (407)
T ss_pred             CCCCch
Confidence            999763

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.04  E-value=0.0025  Score=63.52  Aligned_cols=98  Identities=13%  Similarity=0.069  Sum_probs=58.6

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeecc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITDT   93 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   93 (368)
                      ..+++|||||+.|+-.|..|+ .|.+|++||+.+.+...       .++... +.+........+++++.. .+..++..
T Consensus       312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~-------~d~eis-~~l~~~ll~~~GV~I~~~~~V~~I~~~  383 (659)
T PTZ00153        312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL-------LDADVA-KYFERVFLKSKPVRVHLNTLIEYVRAG  383 (659)
T ss_pred             CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc-------CCHHHH-HHHHHHHhhcCCcEEEcCCEEEEEEec
Confidence            458999999999999999887 49999999998764311       111110 000000000124554433 33344321


Q ss_pred             ------EEEec-------CC--------eEEEecEEEEecCCCCCCCCc
Q 017664           94 ------EVVTA-------GG--------QTFVYDYVVVATGHVESVPKS  121 (368)
Q Consensus        94 ------~v~~~-------~g--------~~~~~d~lvlAtG~~~~~p~~  121 (368)
                            .+.+.       ++        +.+++|.+++|+|..|+...+
T Consensus       384 ~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L  432 (659)
T PTZ00153        384 KGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNL  432 (659)
T ss_pred             CCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccC
Confidence                  12211       11        369999999999999987664

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=97.04  E-value=0.00067  Score=72.31  Aligned_cols=38  Identities=26%  Similarity=0.437  Sum_probs=33.5

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceee
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEI   52 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~   52 (368)
                      ...||||||+|.||++||..++ .|.+|+|+||.+..++
T Consensus       408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG  446 (1167)
T PTZ00306        408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGG  446 (1167)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence            4689999999999999999887 5999999999987553

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.03  E-value=0.0054  Score=57.31  Aligned_cols=94  Identities=20%  Similarity=0.270  Sum_probs=66.3

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc----cc----------------c--------------c--------
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP----KL----------------L--------------E--------  178 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~----~~----------------l--------------~--------  178 (368)
                      +|+|||+|+.|+-+|..|.+  .+.+|+++++.+    .+                +              +        
T Consensus         3 dV~IvGgG~~Gl~~A~~L~~--~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~   80 (374)
T PRK06617          3 NTVILGCGLSGMLTALSFAQ--KGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVD   80 (374)
T ss_pred             cEEEECCCHHHHHHHHHHHc--CCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEE
Confidence            58999999999999999884  578999998641    10                0              0        


Q ss_pred             -c------c-------------CchhHHHHHHHHHcC-CcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCC
Q 017664          179 -F------V-------------GSRASQIALDWLTSK-KVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       179 -~------~-------------~~~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                       .      +             -..+.+.+.+.+++. +++++.+++++++..+++  .+.++++ ++.+|+||-|-|..
T Consensus        81 ~~g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~  159 (374)
T PRK06617         81 NKASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGAN  159 (374)
T ss_pred             CCCceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCC
Confidence             0      0             011223344555555 489999999988866554  6677776 89999999999976


Q ss_pred             CC
Q 017664          236 MA  237 (368)
Q Consensus       236 p~  237 (368)
                      ..
T Consensus       160 S~  161 (374)
T PRK06617        160 SK  161 (374)
T ss_pred             ch
Confidence            43

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=97.03  E-value=0.00062  Score=64.77  Aligned_cols=103  Identities=24%  Similarity=0.263  Sum_probs=25.5

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc------------------------------------------
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE------------------------------------------  178 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~------------------------------------------  178 (368)
                      .|+|||||+.|+-.|...++  .|.+|.++++.+.+..                                          
T Consensus         1 DVVVvGgG~aG~~AAi~AAr--~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~   78 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAAR--AGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDR   78 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHH--TTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-----------
T ss_pred             CEEEECccHHHHHHHHHHHH--CCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccc
Confidence            48999999999999998885  5899999998864310                                          


Q ss_pred             -------ccCch-hHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCC---CcEEecCEEEEccCCCCCchhhhcc
Q 017664          179 -------FVGSR-ASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSS---GETIDTDCHFMCTGKAMASSWLRET  244 (368)
Q Consensus       179 -------~~~~~-~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~---g~~i~~d~vi~a~G~~p~~~~~~~~  244 (368)
                             .+++. +...+.+.+++.|++++.++.+..+..+++   .|.+.+   ..++.++.+|-|||.   -++....
T Consensus        79 ~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~---g~l~~~a  155 (428)
T PF12831_consen   79 YGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD---GDLAALA  155 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccc
Confidence                   01111 111244566788999999999999888765   454443   358999999999994   3455555


Q ss_pred             cccc
Q 017664          245 ILKD  248 (368)
Q Consensus       245 ~l~~  248 (368)
                      +++.
T Consensus       156 G~~~  159 (428)
T PF12831_consen  156 GAPY  159 (428)
T ss_dssp             ----
T ss_pred             cccc
Confidence            5543

>PRK07512 L-aspartate oxidase; Provisional

Probab=97.02  E-value=0.00061  Score=66.29  Aligned_cols=50  Identities=18%  Similarity=0.232  Sum_probs=37.8

Q ss_pred             CCcEEeCCCeeecCCCCeEEecccCC--CCcc-----chHHHHHHHHHHHHHHHHHHH
Q 017664          253 RGRLMVDENLRVRGFKNVFAIGDITD--IPEI-----KQGYLAQKHALVTAKNLKKLM  303 (368)
Q Consensus       253 ~g~i~vd~~~~~~~~~~ifa~GD~~~--~~~~-----~~~~~a~~~g~~aa~~i~~~l  303 (368)
                      .|.+.+|.+.|+ +.|++||+|+|+.  ....     .....+.-.|+.|++++....
T Consensus       341 ~GGi~vd~~~~t-~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~~~  397 (513)
T PRK07512        341 MGGIAVDADGRS-SLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAGTP  397 (513)
T ss_pred             cCCEEECCCCcc-ccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            478999999998 7999999999973  2111     123457788999999998764

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=97.02  E-value=0.0006  Score=67.24  Aligned_cols=52  Identities=13%  Similarity=0.104  Sum_probs=39.3

Q ss_pred             CCcEEeCCCeeecCCCCeEEecccCCCC--c-----cchHHHHHHHHHHHHHHHHHHHcC
Q 017664          253 RGRLMVDENLRVRGFKNVFAIGDITDIP--E-----IKQGYLAQKHALVTAKNLKKLMMG  305 (368)
Q Consensus       253 ~g~i~vd~~~~~~~~~~ifa~GD~~~~~--~-----~~~~~~a~~~g~~aa~~i~~~l~g  305 (368)
                      .|.+.+|.+.|| +.|++||+|+|+...  .     -.....+.-.|+.|++++......
T Consensus       357 ~GGi~~d~~~~t-~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa~~~~~  415 (580)
T TIGR01176       357 MGGIETDINCET-RIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAAERAAR  415 (580)
T ss_pred             CCCeeECcCccc-ccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHHHhhcc
Confidence            577999999998 799999999996421  1     123456788899999998876543

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=97.01  E-value=0.00059  Score=67.44  Aligned_cols=52  Identities=15%  Similarity=0.178  Sum_probs=40.1

Q ss_pred             CCcEEeCCCeeecCCCCeEEecccCCCC--c-----cchHHHHHHHHHHHHHHHHHHHcC
Q 017664          253 RGRLMVDENLRVRGFKNVFAIGDITDIP--E-----IKQGYLAQKHALVTAKNLKKLMMG  305 (368)
Q Consensus       253 ~g~i~vd~~~~~~~~~~ifa~GD~~~~~--~-----~~~~~~a~~~g~~aa~~i~~~l~g  305 (368)
                      .|.|.||.+.|+ +.|++||+|+|++..  .     ......|.-.|+.|+++++..+.+
T Consensus       358 ~GGi~vd~~~~t-~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~~  416 (582)
T PRK09231        358 MGGIETDQNCET-RIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAERAAT  416 (582)
T ss_pred             CCCEEECCCCcc-ccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHHhhhc
Confidence            578999999998 799999999997421  1     123356788999999999887644

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=97.01  E-value=0.0019  Score=65.58  Aligned_cols=89  Identities=18%  Similarity=0.324  Sum_probs=69.1

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------ccCchhHHHHHHHHHcCCcEEEecceeeec
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE---------FVGSRASQIALDWLTSKKVEVILNQSVTLN  208 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~---------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  208 (368)
                      .+++|.|||+|++|+-+|..|.+  .+..|++++|.++...         ..|....+.-.+.+++.||++.+++.|-+-
T Consensus      1784 tg~~vaiigsgpaglaaadqlnk--~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~ 1861 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNK--AGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH 1861 (2142)
T ss_pred             cCcEEEEEccCchhhhHHHHHhh--cCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc
Confidence            36999999999999999999984  5899999999988632         245556666778899999999999876421


Q ss_pred             ccCCCeEEcCCCcEEecCEEEEccCCC
Q 017664          209 TISDGLIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       209 ~~~~~~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                            + .-|+-.-+.|.+++|+|..
T Consensus      1862 ------v-s~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1862 ------V-SLDELKKENDAIVLATGST 1881 (2142)
T ss_pred             ------c-cHHHHhhccCeEEEEeCCC
Confidence                  1 1233345689999999975

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=97.00  E-value=0.0011  Score=60.38  Aligned_cols=103  Identities=22%  Similarity=0.277  Sum_probs=74.2

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHH-------------------------------
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIA-------------------------------  188 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~-------------------------------  188 (368)
                      -..+|+|+|..+...+..+..+-.+..|.+|...++ +|.+-|.++..+                               
T Consensus       179 vp~liigggtaAfaa~rai~s~da~A~vl~iseepe-lPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~F  257 (659)
T KOG1346|consen  179 VPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPE-LPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDGF  257 (659)
T ss_pred             CceeEEcCCchhhhcccccccCCCCceEEeeccCcc-CcccCCCcchhceecCCCChhhheeecccCCccceeEecCCcc
Confidence            346999999988877777765445667777765544 232222222221                               


Q ss_pred             ------HHHHHcCCcEEEecceeeecccCCCeEEcCCCcEEecCEEEEccCCCCCc-hhhhc
Q 017664          189 ------LDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMAS-SWLRE  243 (368)
Q Consensus       189 ------~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~-~~~~~  243 (368)
                            .......||.+..+.++..+...+..|.++||.+|.+|-+++|||.+|.. +.+..
T Consensus       258 fvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~  319 (659)
T KOG1346|consen  258 FVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEE  319 (659)
T ss_pred             eeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhh
Confidence                  12345679999999999999888889999999999999999999999853 34433

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=97.00  E-value=0.00081  Score=60.63  Aligned_cols=34  Identities=32%  Similarity=0.538  Sum_probs=30.8

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~   48 (368)
                      ...||+|||||.+|.+.|+.|.+ |.+|.||||+=
T Consensus        44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl   78 (509)
T KOG1298|consen   44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERDL   78 (509)
T ss_pred             CcccEEEECCcchHHHHHHHHhhCCcEEEEEeccc
Confidence            36899999999999999999985 99999999873

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.00  E-value=0.00081  Score=65.59  Aligned_cols=38  Identities=29%  Similarity=0.299  Sum_probs=33.7

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCce
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYF   50 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~   50 (368)
                      +..++||||||||.|||.||..++ .|.+|+|+||....
T Consensus         3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~   41 (562)
T COG1053           3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPK   41 (562)
T ss_pred             ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccC
Confidence            346789999999999999999998 59999999998753

>PLN02976 amine oxidase

Probab=96.99  E-value=0.00079  Score=70.90  Aligned_cols=40  Identities=25%  Similarity=0.409  Sum_probs=35.6

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeec
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITW   54 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~   54 (368)
                      ..++|+|||||++|+++|+.|+ .|++|+|+|+++.+|+.+
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri  732 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRV  732 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCce
Confidence            3579999999999999999998 599999999998887654

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=96.98  E-value=0.0081  Score=56.52  Aligned_cols=95  Identities=17%  Similarity=0.216  Sum_probs=66.4

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc------------------c--------------c---------
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL------------------L--------------E---------  178 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~------------------l--------------~---------  178 (368)
                      .+|+|||+|+.|+-+|..|.+  .+.+|+++++.+..                  +              +         
T Consensus         3 ~dV~IvGaGpaGl~~A~~L~~--~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~   80 (392)
T PRK08243          3 TQVAIIGAGPAGLLLGQLLHL--AGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFD   80 (392)
T ss_pred             ceEEEECCCHHHHHHHHHHHh--cCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEEC
Confidence            579999999999999999885  58889998876421                  0              0         


Q ss_pred             ------cc-------------CchhHHHHHHHHHcCCcEEEecceeeeccc-CCC--eEEc-CCCc--EEecCEEEEccC
Q 017664          179 ------FV-------------GSRASQIALDWLTSKKVEVILNQSVTLNTI-SDG--LIET-SSGE--TIDTDCHFMCTG  233 (368)
Q Consensus       179 ------~~-------------~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~-~~~--~v~~-~~g~--~i~~d~vi~a~G  233 (368)
                            .+             .+.+.+.+.+..++.|++++.++++++++. +++  .+.+ .+|+  ++++|+||-|-|
T Consensus        81 g~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG  160 (392)
T PRK08243         81 GRRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDG  160 (392)
T ss_pred             CEEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCC
Confidence                  00             011223344445678999999999988765 333  5555 4664  689999999999


Q ss_pred             CCC
Q 017664          234 KAM  236 (368)
Q Consensus       234 ~~p  236 (368)
                      ...
T Consensus       161 ~~S  163 (392)
T PRK08243        161 FHG  163 (392)
T ss_pred             CCC
Confidence            753

>PLN02785 Protein HOTHEAD

Probab=96.92  E-value=0.0012  Score=64.98  Aligned_cols=36  Identities=25%  Similarity=0.397  Sum_probs=32.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhcCCcEEEEcCCCc
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEY   49 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~g~~v~lie~~~~   49 (368)
                      ...+|+||||||.||+.+|.+|..+.+|+|||+++.
T Consensus        53 ~~~yD~IIVG~G~aG~~lA~~Ls~~~~VLllE~G~~   88 (587)
T PLN02785         53 DSAYDYIVVGGGTAGCPLAATLSQNFSVLLLERGGV   88 (587)
T ss_pred             cccCCEEEECcCHHHHHHHHHHhcCCcEEEEecCCC
Confidence            346999999999999999999988899999999874

>TIGR00136 gidA glucose-inhibited division protein A

Probab=96.90  E-value=0.01  Score=58.13  Aligned_cols=93  Identities=18%  Similarity=0.266  Sum_probs=63.4

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc------------------cc---cC------------------
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL------------------EF---VG------------------  181 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l------------------~~---~~------------------  181 (368)
                      .|+|||+|++|+++|..+++  .+.+|.++++.....                  ..   +.                  
T Consensus         2 DViVIGaG~AGl~aA~ala~--~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln   79 (617)
T TIGR00136         2 DVIVIGGGHAGCEAALAAAR--MGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLN   79 (617)
T ss_pred             eEEEECccHHHHHHHHHHHH--CCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecc
Confidence            48999999999999999885  477888887642100                  00   00                  


Q ss_pred             ----c------------hhHHHHHHHHHcC-CcEEEecceeeecccC-CC---eEEcCCCcEEecCEEEEccCCCC
Q 017664          182 ----S------------RASQIALDWLTSK-KVEVILNQSVTLNTIS-DG---LIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       182 ----~------------~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~-~~---~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                          +            .+...+.+.+++. |++++.+. +..+..+ ++   .|.+.+|..+.||.||+|||.-.
T Consensus        80 ~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~-Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL  154 (617)
T TIGR00136        80 SSKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQGE-VEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL  154 (617)
T ss_pred             cCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeE-EEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence                1            1112345556665 88888664 5555433 33   68888898999999999999763

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=96.89  E-value=0.004  Score=58.66  Aligned_cols=55  Identities=25%  Similarity=0.298  Sum_probs=40.7

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCC--C-----eEE-cCCCc--EEe---cCEEEEccCCCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISD--G-----LIE-TSSGE--TID---TDCHFMCTGKAM  236 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~--~-----~v~-~~~g~--~i~---~d~vi~a~G~~p  236 (368)
                      +.+...+.++|+++||+++.+++|+.+..+.  +     .+. ..+|.  +++   -|.|+++.|..-
T Consensus       207 eSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~t  274 (500)
T PF06100_consen  207 ESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSMT  274 (500)
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCccc
Confidence            4778889999999999999999999887642  2     222 24443  333   789999998653

>PLN02546 glutathione reductase

Probab=96.86  E-value=0.0026  Score=62.38  Aligned_cols=96  Identities=17%  Similarity=0.165  Sum_probs=58.2

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEee--
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSIT--   91 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--   91 (368)
                      ..+++|||||+.|+-.|..|+ .+.+|+|+++.+.+...       .++...........  ..+++++.. .+..+.  
T Consensus       252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~-------~d~~~~~~l~~~L~--~~GV~i~~~~~v~~i~~~  322 (558)
T PLN02546        252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG-------FDEEVRDFVAEQMS--LRGIEFHTEESPQAIIKS  322 (558)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc-------cCHHHHHHHHHHHH--HCCcEEEeCCEEEEEEEc
Confidence            468999999999999999987 49999999988754211       11111000000011  125655432 333342  


Q ss_pred             -cc--EEEecCCeEEEecEEEEecCCCCCCCC
Q 017664           92 -DT--EVVTAGGQTFVYDYVVVATGHVESVPK  120 (368)
Q Consensus        92 -~~--~v~~~~g~~~~~d~lvlAtG~~~~~p~  120 (368)
                       ..  .+.+.++....+|.+++|+|..|+...
T Consensus       323 ~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~  354 (558)
T PLN02546        323 ADGSLSLKTNKGTVEGFSHVMFATGRKPNTKN  354 (558)
T ss_pred             CCCEEEEEECCeEEEecCEEEEeeccccCCCc
Confidence             12  233444444558999999999987754

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=96.86  E-value=0.0012  Score=64.48  Aligned_cols=62  Identities=11%  Similarity=0.108  Sum_probs=45.1

Q ss_pred             HHHHHHHHcCCcEEEecceeeecccCCC-----eEEcCCC---c-EEecCEEEEccCCCCCchhhhccccc
Q 017664          186 QIALDWLTSKKVEVILNQSVTLNTISDG-----LIETSSG---E-TIDTDCHFMCTGKAMASSWLRETILK  247 (368)
Q Consensus       186 ~~~~~~l~~~gv~i~~~~~v~~i~~~~~-----~v~~~~g---~-~i~~d~vi~a~G~~p~~~~~~~~~l~  247 (368)
                      ..+...++..++.+.+++.++++..+.+     .+...++   + ...++.+|+++|...++.++..++.+
T Consensus       207 a~l~~a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgig  277 (542)
T COG2303         207 AYLKPALKRPNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIG  277 (542)
T ss_pred             hcchhHhcCCceEEecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCCC
Confidence            3444567788899999999999988776     3333333   2 35689999999988777777666643

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=96.86  E-value=0.0016  Score=64.39  Aligned_cols=39  Identities=31%  Similarity=0.422  Sum_probs=34.1

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeee
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEIT   53 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~   53 (368)
                      .++||+|||+|++|+++|..++ +|.+|+|||+++..+..
T Consensus        15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~   54 (578)
T PRK12843         15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGT   54 (578)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Confidence            3679999999999999999887 59999999998876543

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=96.83  E-value=0.0031  Score=64.54  Aligned_cols=34  Identities=21%  Similarity=0.339  Sum_probs=30.8

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRG  173 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~  173 (368)
                      .+++|+|||+|+.|+.+|..|.+  .|.+|+++++.
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~--~Gh~Vtv~E~~  415 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLR--SGHNVTAIDGL  415 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHh--CCCeEEEEccc
Confidence            57899999999999999999985  59999999974

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=96.80  E-value=0.0042  Score=58.35  Aligned_cols=34  Identities=35%  Similarity=0.499  Sum_probs=29.9

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL  176 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~  176 (368)
                      +|+|||+|..|+++|..|++  .|.+|+++++.+..
T Consensus         2 ~VvVIGgGlAGleaA~~LAr--~G~~V~LiE~rp~~   35 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQ--AGVPVILYEMRPEK   35 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHh--CCCcEEEEeccccc
Confidence            68999999999999999985  58999999976653

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK11445 putative oxidoreductase; Provisional

Probab=96.78  E-value=0.015  Score=53.74  Aligned_cols=93  Identities=24%  Similarity=0.213  Sum_probs=62.3

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc--c---------------------cc-----------------
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL--E---------------------FV-----------------  180 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l--~---------------------~~-----------------  180 (368)
                      +|+|||+|++|+-+|..|.+  . .+|+++++.+...  +                     ..                 
T Consensus         3 dV~IvGaGpaGl~~A~~La~--~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~   79 (351)
T PRK11445          3 DVAIIGLGPAGSALARLLAG--K-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTI   79 (351)
T ss_pred             eEEEECCCHHHHHHHHHHhc--c-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEe
Confidence            68999999999999999874  3 7899998765210  0                     00                 


Q ss_pred             --Cc--------h---h-HHHHHHH---HHcCCcEEEecceeeecccCCC--eEEc-CCCc--EEecCEEEEccCCCC
Q 017664          181 --GS--------R---A-SQIALDW---LTSKKVEVILNQSVTLNTISDG--LIET-SSGE--TIDTDCHFMCTGKAM  236 (368)
Q Consensus       181 --~~--------~---~-~~~~~~~---l~~~gv~i~~~~~v~~i~~~~~--~v~~-~~g~--~i~~d~vi~a~G~~p  236 (368)
                        ..        .   + ...+.+.   ..+.|++++.++.+..++.+++  .+.+ .+|+  ++++|++|.|.|...
T Consensus        80 ~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S  157 (351)
T PRK11445         80 DLANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANS  157 (351)
T ss_pred             cccccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCc
Confidence              00        0   0 0011122   2346899999999988876555  4443 4664  689999999999763

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=96.78  E-value=0.0011  Score=65.80  Aligned_cols=51  Identities=16%  Similarity=0.074  Sum_probs=38.6

Q ss_pred             CCcEEeCCCeeecCCCCeEEecccCCCCc------cchHHHHHHHHHHHHHHHHHHHc
Q 017664          253 RGRLMVDENLRVRGFKNVFAIGDITDIPE------IKQGYLAQKHALVTAKNLKKLMM  304 (368)
Q Consensus       253 ~g~i~vd~~~~~~~~~~ifa~GD~~~~~~------~~~~~~a~~~g~~aa~~i~~~l~  304 (368)
                      .|.+.+|...+| +.|++||+|+|++...      -.....+.-.|+.|+++++..+.
T Consensus       370 ~gG~~~d~~~~t-~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~~~  426 (603)
T TIGR01811       370 MGGLWVDYDQMT-NIPGLFAAGECDFSQHGANRLGANSLLSAIADGYFALPFTIPNYL  426 (603)
T ss_pred             CCCeeECCCCcc-cCCCEEECcccccCcCCCccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence            477999999998 7999999999975321      02335678888999998877653

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=96.75  E-value=0.013  Score=55.03  Aligned_cols=92  Identities=17%  Similarity=0.280  Sum_probs=61.7

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC-ccc--------------c------------------cc-------c
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRG-PKL--------------L------------------EF-------V  180 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~-~~~--------------l------------------~~-------~  180 (368)
                      .|+|||+|++|+-+|..|++  .+.+|.++++. +..              +                  +.       .
T Consensus         2 DVvIVGaGpAG~~aA~~La~--~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (388)
T TIGR02023         2 DVAVIGGGPSGATAAETLAR--AGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTI   79 (388)
T ss_pred             eEEEECCCHHHHHHHHHHHh--CCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeecc
Confidence            58999999999999999985  47889999876 210              0                  00       0


Q ss_pred             C--c---------hhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCC------C--cEEecCEEEEccCCC
Q 017664          181 G--S---------RASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSS------G--ETIDTDCHFMCTGKA  235 (368)
Q Consensus       181 ~--~---------~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~------g--~~i~~d~vi~a~G~~  235 (368)
                      +  .         .+-+.+.+.+.+.|++++.+ .++.+..+++  .+.+.+      |  .++.+|.||.|.|..
T Consensus        80 ~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~  154 (388)
T TIGR02023        80 PSEDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGAN  154 (388)
T ss_pred             CCCCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCC
Confidence            0  0         11123455567789999865 5777765555  444432      2  379999999999964

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=96.72  E-value=0.014  Score=55.75  Aligned_cols=49  Identities=18%  Similarity=0.171  Sum_probs=38.4

Q ss_pred             HHHHHHcC---CcEEEecceeeecccC--------CC-eEEcCCCcEEecCEEEEccCCCC
Q 017664          188 ALDWLTSK---KVEVILNQSVTLNTIS--------DG-LIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       188 ~~~~l~~~---gv~i~~~~~v~~i~~~--------~~-~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                      +.+.+++.   +++++.++++..++.+        ++ .+.+.+|+++.+|++|-|-|...
T Consensus       123 L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S  183 (437)
T TIGR01989       123 LYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNS  183 (437)
T ss_pred             HHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCC
Confidence            44555665   4999999999988632        22 77888999999999999999764

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=96.71  E-value=0.0023  Score=56.75  Aligned_cols=36  Identities=22%  Similarity=0.386  Sum_probs=32.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      +...|++|||+|.|||.||..|+ +|.+|+|+|++..
T Consensus         3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEge   39 (552)
T COG3573           3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE   39 (552)
T ss_pred             cccccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence            34689999999999999999998 6999999998864

>PRK06126 hypothetical protein; Provisional

Probab=96.63  E-value=0.014  Score=57.39  Aligned_cols=34  Identities=44%  Similarity=0.679  Sum_probs=28.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      ..+|+|||+|+.|+-+|..|.+  .|.+|+++++.+
T Consensus         7 ~~~VlIVGaGpaGL~~Al~La~--~G~~v~viEr~~   40 (545)
T PRK06126          7 ETPVLIVGGGPVGLALALDLGR--RGVDSILVERKD   40 (545)
T ss_pred             cCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCC
Confidence            4579999999999999999985  478888888664

>TIGR01810 betA choline dehydrogenase

Probab=96.60  E-value=0.002  Score=63.23  Aligned_cols=88  Identities=19%  Similarity=0.135  Sum_probs=54.7

Q ss_pred             HHHHHHHcCCcEEEecceeeecccCCC---eEEcCC-Cc---EEecCEEEEccCCCCCchhhhccccccc--cCCCC---
Q 017664          187 IALDWLTSKKVEVILNQSVTLNTISDG---LIETSS-GE---TIDTDCHFMCTGKAMASSWLRETILKDS--LDGRG---  254 (368)
Q Consensus       187 ~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~-g~---~i~~d~vi~a~G~~p~~~~~~~~~l~~~--~~~~g---  254 (368)
                      .+....++.|++|++++.|.+|..+++   +|+..+ +.   .+.++.||+|.|..-.+.++..++++-.  +++-|   
T Consensus       199 ~l~~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~  278 (532)
T TIGR01810       199 YLHPAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEP  278 (532)
T ss_pred             HhhhhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCe
Confidence            344444577899999999999987655   454432 22   3589999999998656667776665421  11111   


Q ss_pred             ---cEEeCCCeeecCCCCeEEeccc
Q 017664          255 ---RLMVDENLRVRGFKNVFAIGDI  276 (368)
Q Consensus       255 ---~i~vd~~~~~~~~~~ifa~GD~  276 (368)
                         ..-|-++||.  ++.++..+-.
T Consensus       279 ~~~lp~VG~nL~D--H~~~~~~~~~  301 (532)
T TIGR01810       279 RIHLPGVGENLQD--HLEVYVQHAC  301 (532)
T ss_pred             EeeCCccccchhh--cccceeEEEe
Confidence               0114456665  5666665543

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=96.48  E-value=0.012  Score=55.97  Aligned_cols=93  Identities=18%  Similarity=0.222  Sum_probs=61.0

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc------------------------------------------c
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL------------------------------------------L  177 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~------------------------------------------l  177 (368)
                      -.|+|||+|..|+|.|...+  ..|.++.+++-+..-                                          |
T Consensus         5 ~DVIVIGgGHAG~EAA~AaA--RmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~L   82 (621)
T COG0445           5 YDVIVIGGGHAGVEAALAAA--RMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRML   82 (621)
T ss_pred             CceEEECCCccchHHHHhhh--ccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhc
Confidence            46999999999999998877  467777777644210                                          0


Q ss_pred             c------------ccCchh-HHHHHHHHH-cCCcEEEecceeeeccc-CCC---eEEcCCCcEEecCEEEEccCCC
Q 017664          178 E------------FVGSRA-SQIALDWLT-SKKVEVILNQSVTLNTI-SDG---LIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       178 ~------------~~~~~~-~~~~~~~l~-~~gv~i~~~~~v~~i~~-~~~---~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      .            ..|..+ ...+++.++ ..|+.++.+.. ..+.. ++.   +|.+.+|..+.|+.||++||.-
T Consensus        83 N~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v-~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTF  157 (621)
T COG0445          83 NSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEV-EDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTF  157 (621)
T ss_pred             cCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhh-HHHhhcCCCeEEEEEeCCCCeeecCEEEEeeccc
Confidence            0            011111 122344444 35788876654 33433 332   7899999999999999999963

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.48  E-value=0.024  Score=53.18  Aligned_cols=37  Identities=22%  Similarity=0.389  Sum_probs=28.8

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCC-eEEEEecCccc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDK-KVILVHRGPKL  176 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~-~v~~i~~~~~~  176 (368)
                      .+|+|||+|.+|+.+|..|.+..... .|.++++.+.+
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~   39 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF   39 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence            47999999999999999998643333 38888877543

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=96.43  E-value=0.028  Score=52.82  Aligned_cols=95  Identities=15%  Similarity=0.214  Sum_probs=64.7

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc--------------------------------c---------
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL--------------------------------E---------  178 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l--------------------------------~---------  178 (368)
                      .+|+|||+|+.|+-+|..|.+  .|.+|+++++.+...                                +         
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~--~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~   80 (390)
T TIGR02360         3 TQVAIIGAGPSGLLLGQLLHK--AGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFD   80 (390)
T ss_pred             ceEEEECccHHHHHHHHHHHH--CCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeC
Confidence            579999999999999999885  588899998765200                                0         


Q ss_pred             ------ccC-------------chhHHHHHHHHHcCCcEEEecceeeeccc-CC-C-eEEcC-CCc--EEecCEEEEccC
Q 017664          179 ------FVG-------------SRASQIALDWLTSKKVEVILNQSVTLNTI-SD-G-LIETS-SGE--TIDTDCHFMCTG  233 (368)
Q Consensus       179 ------~~~-------------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~-~~-~-~v~~~-~g~--~i~~d~vi~a~G  233 (368)
                            .++             +.+...+.+.+.+.|+.++.+..++.+.. ++ + .|.+. +|+  ++++|+||-|-|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG  160 (390)
T TIGR02360        81 GQRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDG  160 (390)
T ss_pred             CEEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCC
Confidence                  000             01123344555667888888887665533 22 2 66664 675  689999999999


Q ss_pred             CCC
Q 017664          234 KAM  236 (368)
Q Consensus       234 ~~p  236 (368)
                      ...
T Consensus       161 ~~S  163 (390)
T TIGR02360       161 FHG  163 (390)
T ss_pred             Cch
Confidence            764

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK07538 hypothetical protein; Provisional

Probab=96.42  E-value=0.022  Score=54.05  Aligned_cols=94  Identities=19%  Similarity=0.209  Sum_probs=62.3

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-----------------------------------cC----
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF-----------------------------------VG----  181 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~-----------------------------------~~----  181 (368)
                      +|+|||+|+.|+-+|..|.+  .+.+|+++++.+.+.+.                                   .+    
T Consensus         2 dV~IVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~   79 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQ--RGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQ   79 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHh--CCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCC
Confidence            68999999999999999885  47889999876532000                                   00    


Q ss_pred             ----------------------chhHHHHHHHHHc-CC-cEEEecceeeecccCCC--eEEcCCC-----cEEecCEEEE
Q 017664          182 ----------------------SRASQIALDWLTS-KK-VEVILNQSVTLNTISDG--LIETSSG-----ETIDTDCHFM  230 (368)
Q Consensus       182 ----------------------~~~~~~~~~~l~~-~g-v~i~~~~~v~~i~~~~~--~v~~~~g-----~~i~~d~vi~  230 (368)
                                            ..+.+.+.+.+.+ .| .+++.+++++.++.+++  .+.+.++     +++++|+||-
T Consensus        80 ~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIg  159 (413)
T PRK07538         80 RIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIG  159 (413)
T ss_pred             EEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEE
Confidence                                  0011223333333 35 46999999998876544  3333332     4899999999


Q ss_pred             ccCCCC
Q 017664          231 CTGKAM  236 (368)
Q Consensus       231 a~G~~p  236 (368)
                      |-|...
T Consensus       160 ADG~~S  165 (413)
T PRK07538        160 ADGIHS  165 (413)
T ss_pred             CCCCCH
Confidence            999653

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=96.39  E-value=0.0033  Score=56.78  Aligned_cols=101  Identities=17%  Similarity=0.141  Sum_probs=62.2

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeecc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITDT   93 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   93 (368)
                      +.+++|||||.-||-.+.--. .|.+||++|-.++++..       .++++......-..  .+++.|.-. ++...+++
T Consensus       211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~-------mD~Eisk~~qr~L~--kQgikF~l~tkv~~a~~~  281 (506)
T KOG1335|consen  211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV-------MDGEISKAFQRVLQ--KQGIKFKLGTKVTSATRN  281 (506)
T ss_pred             cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc-------cCHHHHHHHHHHHH--hcCceeEeccEEEEeecc
Confidence            578999999999999987554 59999999988877633       12221111000000  124555332 33333321


Q ss_pred             -----EEEec-----CCeEEEecEEEEecCCCCCCCCchHHH
Q 017664           94 -----EVVTA-----GGQTFVYDYVVVATGHVESVPKSRTER  125 (368)
Q Consensus        94 -----~v~~~-----~g~~~~~d~lvlAtG~~~~~p~~~~~~  125 (368)
                           .+...     ...++++|.+.+++|.+|...++..+.
T Consensus       282 ~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~  323 (506)
T KOG1335|consen  282 GDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEK  323 (506)
T ss_pred             CCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhh
Confidence                 22222     235789999999999999988865443

>TIGR02028 ChlP geranylgeranyl reductase

Probab=96.39  E-value=0.035  Score=52.30  Aligned_cols=38  Identities=18%  Similarity=0.101  Sum_probs=30.2

Q ss_pred             CCeEEecccCCCCccch---HHHHHHHHHHHHHHHHHHHcC
Q 017664          268 KNVFAIGDITDIPEIKQ---GYLAQKHALVTAKNLKKLMMG  305 (368)
Q Consensus       268 ~~ifa~GD~~~~~~~~~---~~~a~~~g~~aa~~i~~~l~g  305 (368)
                      ++++.+||+++.-.|-+   ...|+..|+.||+.+.+.+..
T Consensus       270 ~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~  310 (398)
T TIGR02028       270 GRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRL  310 (398)
T ss_pred             CCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhc
Confidence            68889999998765533   368999999999999877643

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=96.32  E-value=0.03  Score=51.53  Aligned_cols=98  Identities=14%  Similarity=0.101  Sum_probs=68.3

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc--ccc---------CchhHHHHHHHHHcC--CcEEEecce
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL--EFV---------GSRASQIALDWLTSK--KVEVILNQS  204 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l--~~~---------~~~~~~~~~~~l~~~--gv~i~~~~~  204 (368)
                      +.++|+|+|+|=.|+.++..|.  ....+|+++.+++.++  |..         -..+.+.+....+..  +++++.. .
T Consensus        54 kKk~vVVLGsGW~a~S~lk~ld--ts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eA-e  130 (491)
T KOG2495|consen   54 KKKRVVVLGSGWGAISLLKKLD--TSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEA-E  130 (491)
T ss_pred             CCceEEEEcCchHHHHHHHhcc--ccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEec-c
Confidence            4789999999999998888876  3567899999988754  222         235566666666655  5566543 3


Q ss_pred             eeecccCCCe----EEcCCC----cEEecCEEEEccCCCCCc
Q 017664          205 VTLNTISDGL----IETSSG----ETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       205 v~~i~~~~~~----v~~~~g----~~i~~d~vi~a~G~~p~~  238 (368)
                      -..+..+++.    ..++++    -.+.+|++|+|+|..+++
T Consensus       131 c~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~T  172 (491)
T KOG2495|consen  131 CTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNT  172 (491)
T ss_pred             cEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCC
Confidence            4456666552    234444    368899999999988775

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=96.29  E-value=0.022  Score=49.32  Aligned_cols=98  Identities=19%  Similarity=0.253  Sum_probs=63.4

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc--------------------cCchhHHH-------------
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF--------------------VGSRASQI-------------  187 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~--------------------~~~~~~~~-------------  187 (368)
                      +|+|||+|..|+-+|..|+.  .+.+|++++++..+...                    -++.+.+.             
T Consensus         3 siaIVGaGiAGl~aA~~L~~--aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W   80 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALRE--AGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVW   80 (331)
T ss_pred             cEEEEccchHHHHHHHHHHh--cCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeec
Confidence            68999999999999999985  58899999987422100                    01111111             


Q ss_pred             -----------------------------HHHHHHcCCcEEEecceeeecccCCC--eEEcCCC-cEEecCEEEEccCCC
Q 017664          188 -----------------------------ALDWLTSKKVEVILNQSVTLNTISDG--LIETSSG-ETIDTDCHFMCTGKA  235 (368)
Q Consensus       188 -----------------------------~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g-~~i~~d~vi~a~G~~  235 (368)
                                                   +.+.| .-..++.++++|+++...++  ++.+++| +...+|.|+++..-.
T Consensus        81 ~~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~L-AtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PAP  159 (331)
T COG3380          81 TPAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFL-ATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPAP  159 (331)
T ss_pred             cccccccccCCCCCCCCCCccccCcchHHHHHHH-hccchhhhhhhhhhheecCCeeEEEecCCCcccccceEEEecCCC
Confidence                                         11111 22456677888887766555  7888665 578899999997543


Q ss_pred             CCchhh
Q 017664          236 MASSWL  241 (368)
Q Consensus       236 p~~~~~  241 (368)
                      -...++
T Consensus       160 Q~~~LL  165 (331)
T COG3380         160 QTATLL  165 (331)
T ss_pred             cchhhc
Confidence            333444

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=96.23  E-value=0.016  Score=54.16  Aligned_cols=73  Identities=27%  Similarity=0.317  Sum_probs=55.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-------cCch------hHHHHHHHHHcCCcEEEeccee
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF-------VGSR------ASQIALDWLTSKKVEVILNQSV  205 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~-------~~~~------~~~~~~~~l~~~gv~i~~~~~v  205 (368)
                      .++++|||||.+|++.|.+|++  .|.+|+++++.+.+...       ++..      +...+.+.-...+|++++.++|
T Consensus       124 ~~svLVIGGGvAGitAAl~La~--~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV  201 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELAD--MGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEV  201 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHH--cCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeee
Confidence            6899999999999999999996  59999999998865432       1111      2233444455678999999999


Q ss_pred             eecccCCC
Q 017664          206 TLNTISDG  213 (368)
Q Consensus       206 ~~i~~~~~  213 (368)
                      ++++..-+
T Consensus       202 ~ev~G~vG  209 (622)
T COG1148         202 EEVSGSVG  209 (622)
T ss_pred             eeeccccc
Confidence            98877655

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.22  E-value=0.016  Score=52.95  Aligned_cols=33  Identities=30%  Similarity=0.346  Sum_probs=29.4

Q ss_pred             CcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCc
Q 017664           17 KKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEY   49 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~   49 (368)
                      ++|.|||.|+.||+.|.-|+. |++|+.+|..+.
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~   34 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDES   34 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            479999999999999998884 999999998753

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=96.20  E-value=0.0013  Score=54.38  Aligned_cols=35  Identities=29%  Similarity=0.399  Sum_probs=30.2

Q ss_pred             CCcEEEECCChHHHHHHHHhh---cCCcEEEEcCCCce
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ---SFADVVLIDEKEYF   50 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~---~g~~v~lie~~~~~   50 (368)
                      ..||+|||+|.+||+||+.+.   ++.+|.+||..-..
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaP  113 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAP  113 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeecC
Confidence            469999999999999999886   38999999987543

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=96.16  E-value=0.0066  Score=55.43  Aligned_cols=36  Identities=36%  Similarity=0.428  Sum_probs=30.9

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHhhc-----CCcEEEEcCC
Q 017664           12 GLVEKKKVVVIGGGVGGSLLAYHIQS-----FADVVLIDEK   47 (368)
Q Consensus        12 ~~~~~~~vvIIGaG~aGl~aA~~L~~-----g~~v~lie~~   47 (368)
                      ...+.+||||+||||.|++.|..|..     ..+|+|+|-.
T Consensus        32 ~~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~   72 (481)
T KOG3855|consen   32 TDTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG   72 (481)
T ss_pred             CCcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence            34458999999999999999999972     6799999988

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.13  E-value=0.016  Score=51.83  Aligned_cols=98  Identities=22%  Similarity=0.271  Sum_probs=70.1

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhC---------CCCeEE--E-EecCcccccccCchhHHHHHHHHHcCCcEEEeccee
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDF---------PDKKVI--L-VHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSV  205 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~---------~~~~v~--~-i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v  205 (368)
                      .+-.|+|||+|+.|...|.+.+++-         .+.+|.  + |+.--.......+.+...++++.++..|++....+.
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra  289 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRA  289 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhh
Confidence            3568999999999998887766421         111210  0 110001112356788999999999999999988887


Q ss_pred             eecccC---CC--eEEcCCCcEEecCEEEEccCCC
Q 017664          206 TLNTIS---DG--LIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       206 ~~i~~~---~~--~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      .+++..   ++  .+++++|-.+++..+|++||.+
T Consensus       290 ~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr  324 (520)
T COG3634         290 SKLEPAAVEGGLIEVELANGAVLKARTVILATGAR  324 (520)
T ss_pred             hcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence            777664   22  8999999999999999999965

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=96.10  E-value=0.026  Score=57.88  Aligned_cols=35  Identities=29%  Similarity=0.516  Sum_probs=30.2

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK  175 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~  175 (368)
                      +|+|||+|+.|+-+|..|.+..++.+|+++++.+.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            69999999999999999886445889999998764

>PRK08401 L-aspartate oxidase; Provisional

Probab=96.05  E-value=0.066  Score=51.61  Aligned_cols=32  Identities=34%  Similarity=0.426  Sum_probs=25.3

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRG  173 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~  173 (368)
                      ..|+|||+|.+|+-+|..+.+  .+.+|.++++.
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae--~G~~V~liek~   33 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAK--KGFDVTIIGPG   33 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHH--CCCeEEEEeCC
Confidence            468999999999988888875  46788887763

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=96.03  E-value=0.052  Score=51.47  Aligned_cols=33  Identities=42%  Similarity=0.760  Sum_probs=27.1

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK  175 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~  175 (368)
                      .|+|||+|.+|+-.|..+++  .+.+|.++++.+.
T Consensus         1 DVvVIG~G~AGl~AA~~Aae--~G~~V~lvek~~~   33 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAE--AGAKVLLVEKGPR   33 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHH--TTT-EEEEESSSG
T ss_pred             CEEEECCCHHHHHHHHHHhh--hcCeEEEEEeecc
Confidence            38999999999999999986  5889999998765

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=96.01  E-value=0.0077  Score=58.31  Aligned_cols=38  Identities=26%  Similarity=0.397  Sum_probs=33.9

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhhc--CCcEEEEcCCCce
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQS--FADVVLIDEKEYF   50 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~~--g~~v~lie~~~~~   50 (368)
                      ....+|.||||||-||...|.+|..  ..+|+|+|++...
T Consensus        54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            4568999999999999999999985  6999999998764

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=95.93  E-value=0.0078  Score=56.73  Aligned_cols=46  Identities=35%  Similarity=0.598  Sum_probs=33.3

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeecccee
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLR   58 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~   58 (368)
                      |.+.+||||+|.|..-.-.|..|. .|.+|+-+|+++++|..|..+.
T Consensus         1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~   47 (438)
T PF00996_consen    1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLN   47 (438)
T ss_dssp             --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-
T ss_pred             CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhccc
Confidence            567899999999999988888887 5999999999999998876654

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.89  E-value=0.049  Score=52.27  Aligned_cols=83  Identities=24%  Similarity=0.259  Sum_probs=59.5

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEc
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIET  217 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~  217 (368)
                      .+++++|+|+|.+|..+|..|.+  .|.+|+++++...       +......+.+++.|++++.+.....          
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~--~G~~V~~~d~~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~----------   64 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKK--LGAKVILTDEKEE-------DQLKEALEELGELGIELVLGEYPEE----------   64 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCch-------HHHHHHHHHHHhcCCEEEeCCcchh----------
Confidence            46899999999999999999985  5899999987642       1123334556777888776554320          


Q ss_pred             CCCcEEecCEEEEccCCCCCchhhh
Q 017664          218 SSGETIDTDCHFMCTGKAMASSWLR  242 (368)
Q Consensus       218 ~~g~~i~~d~vi~a~G~~p~~~~~~  242 (368)
                         ..-.+|.||.++|..++.+.+.
T Consensus        65 ---~~~~~d~vv~~~g~~~~~~~~~   86 (450)
T PRK14106         65 ---FLEGVDLVVVSPGVPLDSPPVV   86 (450)
T ss_pred             ---HhhcCCEEEECCCCCCCCHHHH
Confidence               1124899999999888776544

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=95.79  E-value=0.11  Score=49.79  Aligned_cols=34  Identities=29%  Similarity=0.469  Sum_probs=28.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      .-.|+|||+|+.|.-+|..+++  .|.+|.++++..
T Consensus        39 ~~DViIVGaGPAG~~aA~~LA~--~G~~VlllEr~~   72 (450)
T PLN00093         39 KLRVAVIGGGPAGACAAETLAK--GGIETFLIERKL   72 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--CCCcEEEEecCC
Confidence            3479999999999999998885  578898988763

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=95.69  E-value=0.094  Score=52.35  Aligned_cols=36  Identities=25%  Similarity=0.368  Sum_probs=31.2

Q ss_pred             hcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          137 KSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       137 ~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      ....+|+|||||..|+-+|..|.+  .+.+|+++++.+
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r--~Gi~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKK--KGFDVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHh--cCCeEEEEeccc
Confidence            346789999999999999999985  588999999864

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=95.59  E-value=0.099  Score=52.38  Aligned_cols=35  Identities=46%  Similarity=0.820  Sum_probs=29.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      ..+|+|||+|++|+-+|..|++ +.+.+|.++++.+
T Consensus        32 ~~dVlIVGAGPaGL~lA~~Lar-~~Gi~v~IiE~~~   66 (634)
T PRK08294         32 EVDVLIVGCGPAGLTLAAQLSA-FPDITTRIVERKP   66 (634)
T ss_pred             CCCEEEECCCHHHHHHHHHHhc-CCCCcEEEEEcCC
Confidence            4579999999999999999984 2478899988764

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=95.59  E-value=0.0061  Score=53.04  Aligned_cols=45  Identities=27%  Similarity=0.387  Sum_probs=36.8

Q ss_pred             CcCCCCCCcEEEECCChHHHHHHHHhhc-------CCcEEEEcCCCceeeec
Q 017664           10 AAGLVEKKKVVVIGGGVGGSLLAYHIQS-------FADVVLIDEKEYFEITW   54 (368)
Q Consensus        10 ~~~~~~~~~vvIIGaG~aGl~aA~~L~~-------g~~v~lie~~~~~~~~~   54 (368)
                      ++++.+.++|+|||||.-|.++|++|.+       ...|+|||+...-+...
T Consensus         4 T~r~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaS   55 (380)
T KOG2852|consen    4 TSREGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGAS   55 (380)
T ss_pred             ccccCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccc
Confidence            4566677999999999999999999973       37899999988765443

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=95.54  E-value=0.078  Score=48.18  Aligned_cols=90  Identities=18%  Similarity=0.135  Sum_probs=63.5

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc--------cc--cCchhHHHHHHHHHcCCcEEEeccee-ee
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL--------EF--VGSRASQIALDWLTSKKVEVILNQSV-TL  207 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l--------~~--~~~~~~~~~~~~l~~~gv~i~~~~~v-~~  207 (368)
                      ..+|.|||+|++|+-.|..|.++.++..|+++++.+.+.        |.  .-+-..+.+.+.++.....+.-|..| +.
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~vG~d   99 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKVGRD   99 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceEEEecceeccc
Confidence            459999999999999999998766789999999887542        21  12234456777888888888877665 21


Q ss_pred             cccCCCeEEcCCCcEEecCEEEEccCCCC
Q 017664          208 NTISDGLIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       208 i~~~~~~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                      +.       +.+ -+-.+|.|++|.|..-
T Consensus       100 vs-------l~e-L~~~ydavvLaYGa~~  120 (468)
T KOG1800|consen  100 VS-------LKE-LTDNYDAVVLAYGADG  120 (468)
T ss_pred             cc-------HHH-HhhcccEEEEEecCCC
Confidence            11       111 1345899999988653

>PLN02985 squalene monooxygenase

Probab=95.53  E-value=0.16  Score=49.59  Aligned_cols=33  Identities=36%  Similarity=0.560  Sum_probs=28.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRG  173 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~  173 (368)
                      ..+|+|||+|..|+-+|..|.+  .+.+|+++++.
T Consensus        43 ~~DViIVGAG~aGlalA~aLa~--~G~~V~vlEr~   75 (514)
T PLN02985         43 ATDVIIVGAGVGGSALAYALAK--DGRRVHVIERD   75 (514)
T ss_pred             CceEEEECCCHHHHHHHHHHHH--cCCeEEEEECc
Confidence            4579999999999999999885  47888888875

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=95.49  E-value=0.1  Score=50.87  Aligned_cols=33  Identities=27%  Similarity=0.492  Sum_probs=29.2

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      -.|+|||||.+|+-+|.+++.  .+.+|.++++++
T Consensus         7 ~DVvIIGGGi~G~~~A~~la~--rGl~V~LvEk~d   39 (508)
T PRK12266          7 YDLLVIGGGINGAGIARDAAG--RGLSVLLCEQDD   39 (508)
T ss_pred             CCEEEECcCHHHHHHHHHHHH--CCCeEEEEecCC
Confidence            469999999999999999995  488999999864

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.44  E-value=0.12  Score=50.43  Aligned_cols=33  Identities=27%  Similarity=0.515  Sum_probs=29.3

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      -.|+|||||.+|+-+|.++++  .+.+|.++++.+
T Consensus         7 ~DVvIIGGGi~G~~~A~~la~--rG~~V~LlEk~d   39 (502)
T PRK13369          7 YDLFVIGGGINGAGIARDAAG--RGLKVLLCEKDD   39 (502)
T ss_pred             cCEEEECCCHHHHHHHHHHHh--CCCcEEEEECCC
Confidence            469999999999999999996  478999999874

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=95.43  E-value=0.055  Score=50.57  Aligned_cols=31  Identities=29%  Similarity=0.542  Sum_probs=24.4

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEec
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHR  172 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~  172 (368)
                      -.|+|||||..|+|.|...++  .|.+.++++.
T Consensus        29 ~dVvVIGgGHAG~EAAaAaaR--~Ga~TlLlT~   59 (679)
T KOG2311|consen   29 YDVVVIGGGHAGCEAAAAAAR--LGARTLLLTH   59 (679)
T ss_pred             ccEEEECCCccchHHHHHHHh--cCCceEEeec
Confidence            479999999999999988773  5666666654

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=95.30  E-value=0.029  Score=55.85  Aligned_cols=34  Identities=21%  Similarity=0.535  Sum_probs=30.8

Q ss_pred             CCcEEEECCChHHHHHHHHhhc---CCcEEEEcCCCc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEY   49 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~   49 (368)
                      .+||||||||.|||+||..+++   |.+|+||||.+.
T Consensus        11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~   47 (608)
T PRK06854         11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI   47 (608)
T ss_pred             EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence            5799999999999999999874   899999999864

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.18  E-value=0.026  Score=54.69  Aligned_cols=34  Identities=32%  Similarity=0.361  Sum_probs=30.1

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      +..+++|||+|++|+++|..|+ +|.+|+++|+.+
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3568999999999999999987 599999999775

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=95.17  E-value=0.022  Score=42.40  Aligned_cols=34  Identities=29%  Similarity=0.346  Sum_probs=29.4

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~   48 (368)
                      +..+++|||||..|..-+..|.+ |.+|+|+.+..
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            56789999999999999988874 99999999874

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=95.17  E-value=0.045  Score=37.23  Aligned_cols=32  Identities=25%  Similarity=0.379  Sum_probs=27.4

Q ss_pred             EEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc
Q 017664          144 IVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL  177 (368)
Q Consensus       144 VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l  177 (368)
                      |||+|.+|+-+|..|.++  +.+|+++++.+++.
T Consensus         1 IiGaG~sGl~aA~~L~~~--g~~v~v~E~~~~~G   32 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKA--GYRVTVFEKNDRLG   32 (68)
T ss_dssp             EES-SHHHHHHHHHHHHT--TSEEEEEESSSSSS
T ss_pred             CEeeCHHHHHHHHHHHHC--CCcEEEEecCcccC
Confidence            799999999999999974  88999999988653

...

>TIGR00551 nadB L-aspartate oxidase

Probab=95.16  E-value=0.18  Score=48.97  Aligned_cols=52  Identities=17%  Similarity=0.132  Sum_probs=36.5

Q ss_pred             hHHHHHHHHHc-CCcEEEecceeeecccCCC---eEEcCC-C--cEEecCEEEEccCCC
Q 017664          184 ASQIALDWLTS-KKVEVILNQSVTLNTISDG---LIETSS-G--ETIDTDCHFMCTGKA  235 (368)
Q Consensus       184 ~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~---~v~~~~-g--~~i~~d~vi~a~G~~  235 (368)
                      +...+.+.+++ .||++++++.+.++..+++   .+...+ +  ..+.++.||+|||-.
T Consensus       130 l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~  188 (488)
T TIGR00551       130 VITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGA  188 (488)
T ss_pred             HHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcc
Confidence            34445566666 6899999999998876555   233322 2  368999999999964

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.15  E-value=0.094  Score=44.40  Aligned_cols=79  Identities=10%  Similarity=0.037  Sum_probs=53.0

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEc
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIET  217 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~  217 (368)
                      .+++++|||||.+|..-+..|.+  .+.+|+++.+...          ..+.+..++.+++++.+..-            
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~--~ga~VtVvsp~~~----------~~l~~l~~~~~i~~~~~~~~------------   63 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLK--AGAQLRVIAEELE----------SELTLLAEQGGITWLARCFD------------   63 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHH--CCCEEEEEcCCCC----------HHHHHHHHcCCEEEEeCCCC------------
Confidence            47899999999999999988885  5789999875422          33444445556766544321            


Q ss_pred             CCCcEEecCEEEEccCCC-CCchhh
Q 017664          218 SSGETIDTDCHFMCTGKA-MASSWL  241 (368)
Q Consensus       218 ~~g~~i~~d~vi~a~G~~-p~~~~~  241 (368)
                       .+..-.+++||.|||-. .|....
T Consensus        64 -~~dl~~~~lVi~at~d~~ln~~i~   87 (205)
T TIGR01470        64 -ADILEGAFLVIAATDDEELNRRVA   87 (205)
T ss_pred             -HHHhCCcEEEEECCCCHHHHHHHH
Confidence             11122489999999976 444333

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=95.10  E-value=0.25  Score=49.01  Aligned_cols=48  Identities=25%  Similarity=0.205  Sum_probs=31.7

Q ss_pred             HHHHHHc-CCcEEEecceeeecccCCC---eE---EcCCCc--EEecCEEEEccCCC
Q 017664          188 ALDWLTS-KKVEVILNQSVTLNTISDG---LI---ETSSGE--TIDTDCHFMCTGKA  235 (368)
Q Consensus       188 ~~~~l~~-~gv~i~~~~~v~~i~~~~~---~v---~~~~g~--~i~~d~vi~a~G~~  235 (368)
                      +.+.+++ .+|+++.++.+..+..+++   ++   ...+|+  .+.++.||+|||-.
T Consensus       138 L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~  194 (580)
T TIGR01176       138 LFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGA  194 (580)
T ss_pred             HHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCC
Confidence            3344433 4788888888877766555   22   234663  68899999999853

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.08  E-value=0.026  Score=48.54  Aligned_cols=33  Identities=36%  Similarity=0.519  Sum_probs=29.9

Q ss_pred             CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      ++++|||+|..|.+.|..|. .|++|+++|+++.
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~   34 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE   34 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence            47999999999999999998 5999999999864

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=95.03  E-value=0.011  Score=55.84  Aligned_cols=35  Identities=23%  Similarity=0.420  Sum_probs=31.7

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      .++||+|||||..|--||.-.. +|.++.|+|+++.
T Consensus        66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF  101 (680)
T KOG0042|consen   66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDF  101 (680)
T ss_pred             CcccEEEECCCccCcceeehhhcccceeEEEecccc
Confidence            3589999999999999998776 8999999999986

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=95.00  E-value=0.031  Score=45.21  Aligned_cols=31  Identities=35%  Similarity=0.441  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           18 KVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        18 ~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      +|.|||||..|.++|..|. +|++|+|..+++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            5899999999999999997 699999999986

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=94.90  E-value=0.041  Score=46.60  Aligned_cols=34  Identities=29%  Similarity=0.302  Sum_probs=29.9

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      +..+++|||||..|..-+..|. .|.+|+|++++.
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~   42 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL   42 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            4568999999999999998886 599999999864

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.84  E-value=0.031  Score=53.77  Aligned_cols=32  Identities=28%  Similarity=0.248  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           18 KVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        18 ~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      +|+|||.|++|+++|+.|. +|++|+++|+++.
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~   34 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS   34 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            5899999999999999887 5999999998865

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.74  E-value=0.28  Score=49.20  Aligned_cols=48  Identities=19%  Similarity=0.207  Sum_probs=34.8

Q ss_pred             HHHHHHHcCCcEEEecceeeecccCCC---eEEc---CCCc--EEecCEEEEccCC
Q 017664          187 IALDWLTSKKVEVILNQSVTLNTISDG---LIET---SSGE--TIDTDCHFMCTGK  234 (368)
Q Consensus       187 ~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~---~~g~--~i~~d~vi~a~G~  234 (368)
                      .+.+.+++.||++++++.+..+..+++   ++..   .+|+  .+.++.||+|||-
T Consensus       175 ~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG  230 (640)
T PRK07573        175 ALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGG  230 (640)
T ss_pred             HHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence            344566778999999999988765555   3332   2453  6889999999995

>PRK07121 hypothetical protein; Validated

Probab=94.65  E-value=0.33  Score=47.19  Aligned_cols=51  Identities=18%  Similarity=0.204  Sum_probs=35.8

Q ss_pred             hHHHHHHHHHcCCcEEEecceeeecccCC-C---eEEc-CCCc--EEec-CEEEEccCC
Q 017664          184 ASQIALDWLTSKKVEVILNQSVTLNTISD-G---LIET-SSGE--TIDT-DCHFMCTGK  234 (368)
Q Consensus       184 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~---~v~~-~~g~--~i~~-d~vi~a~G~  234 (368)
                      +...+.+.+++.|++++++++++++..++ +   .++. .+++  .+.+ +.||+|||-
T Consensus       179 ~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg  237 (492)
T PRK07121        179 LMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGG  237 (492)
T ss_pred             HHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCC
Confidence            44556667778899999999998876543 3   3333 2332  5778 999999994

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=94.52  E-value=0.062  Score=43.37  Aligned_cols=34  Identities=29%  Similarity=0.329  Sum_probs=29.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCC
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEK   47 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~   47 (368)
                      .+..+|+|||||..|..-+..|. .|++|+||+++
T Consensus        11 l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~   45 (157)
T PRK06719         11 LHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE   45 (157)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence            35678999999999999998876 69999999754

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=94.51  E-value=0.35  Score=37.88  Aligned_cols=77  Identities=19%  Similarity=0.296  Sum_probs=52.1

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEc
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIET  217 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~  217 (368)
                      .+++++|+|+|-+|-.++..|... .-.+|+++.|+..        -.+.+.+.+...+++++.-.....          
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt~~--------ra~~l~~~~~~~~~~~~~~~~~~~----------   71 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRTPE--------RAEALAEEFGGVNIEAIPLEDLEE----------   71 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESSHH--------HHHHHHHHHTGCSEEEEEGGGHCH----------
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECCHH--------HHHHHHHHcCccccceeeHHHHHH----------
Confidence            589999999999999999999863 4456999998753        234455555445566654443221          


Q ss_pred             CCCcEEecCEEEEccCCCC
Q 017664          218 SSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       218 ~~g~~i~~d~vi~a~G~~p  236 (368)
                         ..-++|.+|.||+...
T Consensus        72 ---~~~~~DivI~aT~~~~   87 (135)
T PF01488_consen   72 ---ALQEADIVINATPSGM   87 (135)
T ss_dssp             ---HHHTESEEEE-SSTTS
T ss_pred             ---HHhhCCeEEEecCCCC
Confidence               1235899999988653

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR02730 carot_isom carotene isomerase

Probab=94.46  E-value=0.097  Score=50.88  Aligned_cols=37  Identities=24%  Similarity=0.354  Sum_probs=33.4

Q ss_pred             CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeee
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEIT   53 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~   53 (368)
                      +||||||||.+||++|..|+ +|++|+|+|+++..|+.
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~   38 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGS   38 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCc
Confidence            58999999999999999998 59999999999987643

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=94.46  E-value=0.39  Score=48.02  Aligned_cols=51  Identities=10%  Similarity=0.072  Sum_probs=35.4

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeeccc-CCC---eEE---cCCCc--EEecCEEEEccC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTI-SDG---LIE---TSSGE--TIDTDCHFMCTG  233 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~-~~~---~v~---~~~g~--~i~~d~vi~a~G  233 (368)
                      .+...+.+.+++.||+++.++.+.++.. +++   ++.   ..+|+  .+.++.||+|||
T Consensus       167 ~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG  226 (617)
T PTZ00139        167 AMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATG  226 (617)
T ss_pred             HHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCC
Confidence            3445556667778899999988887665 344   332   24564  678999999996

>PRK08275 putative oxidoreductase; Provisional

Probab=94.43  E-value=0.085  Score=52.07  Aligned_cols=34  Identities=26%  Similarity=0.566  Sum_probs=30.5

Q ss_pred             CCcEEEECCChHHHHHHHHhhc---CCcEEEEcCCCc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEY   49 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~   49 (368)
                      .+||||||||.|||+||..+++   |.+|+|+||.+.
T Consensus         9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~   45 (554)
T PRK08275          9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV   45 (554)
T ss_pred             ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            5799999999999999999873   689999999875

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=94.42  E-value=0.098  Score=47.85  Aligned_cols=54  Identities=22%  Similarity=0.170  Sum_probs=45.7

Q ss_pred             CchhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCCC
Q 017664          181 GSRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       181 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      +..+...+.+.+++.|++++.+++|+.++.+++   .|.+.+| ++.+|.||+|+|..
T Consensus       136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~  192 (337)
T TIGR02352       136 PRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAW  192 (337)
T ss_pred             hHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChh
Confidence            457778888999999999999999999987665   4677777 79999999999965

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=94.41  E-value=0.27  Score=46.45  Aligned_cols=47  Identities=19%  Similarity=0.233  Sum_probs=32.8

Q ss_pred             HHHHHHc-CCcEEEecceeeecccCCC----eEEc-CC-C--cEEecCEEEEccCC
Q 017664          188 ALDWLTS-KKVEVILNQSVTLNTISDG----LIET-SS-G--ETIDTDCHFMCTGK  234 (368)
Q Consensus       188 ~~~~l~~-~gv~i~~~~~v~~i~~~~~----~v~~-~~-g--~~i~~d~vi~a~G~  234 (368)
                      +.+.+++ .+|+++.++.+.++..+++    ++.+ .+ +  ..+.++.+|+|||-
T Consensus       139 L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG  194 (518)
T COG0029         139 LLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGG  194 (518)
T ss_pred             HHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCC
Confidence            4455554 6899999988777766665    3333 22 2  47889999999994

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=94.40  E-value=0.081  Score=48.66  Aligned_cols=98  Identities=19%  Similarity=0.158  Sum_probs=53.2

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc-------cc----------------------------------
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL-------EF----------------------------------  179 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l-------~~----------------------------------  179 (368)
                      .++.||.|+..+-+|..+.+. ...++.++++.+.+.       +.                                  
T Consensus         4 D~igIG~GP~nLslA~~l~~~-~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl~   82 (341)
T PF13434_consen    4 DLIGIGFGPFNLSLAALLEEH-GDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRLY   82 (341)
T ss_dssp             SEEEE--SHHHHHHHHHHHHH-H---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-HH
T ss_pred             eEEEEeeCHHHHHHHHHhhhc-CCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCChh
Confidence            478999999999999988875 367888899776430       00                                  


Q ss_pred             -------cC---chhHHHHHHHHHcCCcEEEecceeeecccCCC------eEEc----CCCcEEecCEEEEccCCCCCch
Q 017664          180 -------VG---SRASQIALDWLTSKKVEVILNQSVTLNTISDG------LIET----SSGETIDTDCHFMCTGKAMASS  239 (368)
Q Consensus       180 -------~~---~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~------~v~~----~~g~~i~~d~vi~a~G~~p~~~  239 (368)
                             +.   .++.++++-..++..-.+..+.+|+.|+...+      .|.+    .+++++.|+.|++++|..|..+
T Consensus        83 ~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~iP  162 (341)
T PF13434_consen   83 EFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRIP  162 (341)
T ss_dssp             HHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE---
T ss_pred             hhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCCC
Confidence                   00   01111121222334433777899998876532      5555    2446899999999999887643

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.36  E-value=0.17  Score=48.72  Aligned_cols=85  Identities=15%  Similarity=0.140  Sum_probs=58.3

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCC
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSG  220 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g  220 (368)
                      ++.|+|.|.+|+.+|..|.+  .|.+|+++++.+..       ......+.|++.|++++.+..... +    .+..   
T Consensus         2 ~v~viG~G~sG~s~a~~l~~--~G~~V~~~D~~~~~-------~~~~~~~~l~~~gi~~~~g~~~~~-~----~~~~---   64 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKA--QGWEVVVSDRNDSP-------ELLERQQELEQEGITVKLGKPLEL-E----SFQP---   64 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHH--CCCEEEEECCCCch-------hhHHHHHHHHHcCCEEEECCccch-h----hhhH---
Confidence            68999999999999888874  58899998876542       123334567788999987654320 0    0000   


Q ss_pred             cEEecCEEEEccCCCCCchhhh
Q 017664          221 ETIDTDCHFMCTGKAMASSWLR  242 (368)
Q Consensus       221 ~~i~~d~vi~a~G~~p~~~~~~  242 (368)
                      ..-.+|.||.++|..++.+.+.
T Consensus        65 ~~~~~d~vv~s~gi~~~~~~~~   86 (459)
T PRK02705         65 WLDQPDLVVVSPGIPWDHPTLV   86 (459)
T ss_pred             HhhcCCEEEECCCCCCCCHHHH
Confidence            0124799999999988766554

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=94.31  E-value=0.27  Score=41.48  Aligned_cols=74  Identities=15%  Similarity=0.183  Sum_probs=48.2

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEc
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIET  217 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~  217 (368)
                      .+++++|||+|..|...+..|.+  .+.+|+++.+..          ...+.+...+..+.+....             +
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~--~ga~V~VIs~~~----------~~~l~~l~~~~~i~~~~~~-------------~   63 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLK--YGAHIVVISPEL----------TENLVKLVEEGKIRWKQKE-------------F   63 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEcCCC----------CHHHHHHHhCCCEEEEecC-------------C
Confidence            47899999999999999988885  468999996431          2333444444445543211             1


Q ss_pred             CCCcEEecCEEEEccCCCC
Q 017664          218 SSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       218 ~~g~~i~~d~vi~a~G~~p  236 (368)
                      .....-.+|+||.||+...
T Consensus        64 ~~~~l~~adlViaaT~d~e   82 (202)
T PRK06718         64 EPSDIVDAFLVIAATNDPR   82 (202)
T ss_pred             ChhhcCCceEEEEcCCCHH
Confidence            1112235899999988664

>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ]

Probab=94.27  E-value=0.007  Score=45.72  Aligned_cols=47  Identities=30%  Similarity=0.375  Sum_probs=34.0

Q ss_pred             CCCeEEEeecCCcceeE--------ecCc-----cccCccceeeeccccchhHHHHHcCCCC
Q 017664          317 GYPIALVSLGRREGVAH--------FPFL-----TISGRIPGWIKSRDLFVGKTRKQLGLKP  365 (368)
Q Consensus       317 ~~~~~~~~~g~~~~~~~--------~~~~-----~~~~~~~~~~k~~~~~~~~~~~~lG~~~  365 (368)
                      .|+++.+|++++++...        .++.     .+.+...+++|+  ++++++++|||+|+
T Consensus         8 ~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kl--i~d~~t~~IlGa~~   67 (110)
T PF02852_consen    8 DPEIASVGLTEEEARKQGIDYEVVTVPFKSNDRARYYPETEGFVKL--IFDKKTGRILGAQI   67 (110)
T ss_dssp             SSEEEEEES-HHHHHHHTSGEEEEEEEEGGEHHHHHTTTTEEEEEE--EEETTTTBEEEEEE
T ss_pred             CCceEEEccCHHHHHhccCceeeeeecccccchhcccCCcceeeEE--EEEeeccceeeeee
Confidence            57899999988776422        1221     134557899999  99999999999986

; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=94.26  E-value=0.34  Score=40.52  Aligned_cols=36  Identities=36%  Similarity=0.555  Sum_probs=32.0

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRG  173 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~  173 (368)
                      .-..++|||+|.+|+..|..+.+++|+.+|.+|+.+
T Consensus        75 AesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~S  110 (328)
T KOG2960|consen   75 AESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESS  110 (328)
T ss_pred             hccceEEECCCccccceeeeeeccCCCceEEEEEee
Confidence            356799999999999999999988899999999865

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=94.19  E-value=0.13  Score=47.23  Aligned_cols=35  Identities=43%  Similarity=0.814  Sum_probs=30.3

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL  176 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~  176 (368)
                      ..|+|||+|++|+.+|..+.+  .+.+|.+++..+.+
T Consensus         4 ~dviIIGgGpAGlMaA~~aa~--~G~~V~lid~~~k~   38 (408)
T COG2081           4 FDVIIIGGGPAGLMAAISAAK--AGRRVLLIDKGPKL   38 (408)
T ss_pred             ceEEEECCCHHHHHHHHHHhh--cCCEEEEEecCccc
Confidence            579999999999999999885  68999999987643

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=94.10  E-value=0.11  Score=47.70  Aligned_cols=35  Identities=34%  Similarity=0.530  Sum_probs=28.9

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL  177 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l  177 (368)
                      +|+|||+|+.|+-+|..|.+  .+.+|+++++.+.+.
T Consensus         3 dV~IvGaG~aGl~~A~~L~~--~G~~v~i~E~~~~~~   37 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALAR--AGIDVTIIERRPDPR   37 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHH--TTCEEEEEESSSSCC
T ss_pred             eEEEECCCHHHHHHHHHHHh--cccccccchhccccc
Confidence            68999999999999999996  489999999987653

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=94.06  E-value=0.31  Score=44.94  Aligned_cols=33  Identities=27%  Similarity=0.413  Sum_probs=28.0

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      .+|+|||||..|+-.|..|.+  .+.+|.+++.+.
T Consensus         3 ~~VvIvGgGI~Gla~A~~l~r--~G~~v~VlE~~e   35 (420)
T KOG2614|consen    3 PKVVIVGGGIVGLATALALHR--KGIDVVVLESRE   35 (420)
T ss_pred             CcEEEECCcHHHHHHHHHHHH--cCCeEEEEeecc
Confidence            579999999999999999985  588888887653

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=94.02  E-value=0.087  Score=44.50  Aligned_cols=33  Identities=30%  Similarity=0.435  Sum_probs=29.2

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEK   47 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~   47 (368)
                      +.++++|||||-.|...|..|. .|.+|+|++++
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            4679999999999999998876 59999999875

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=93.97  E-value=0.24  Score=46.02  Aligned_cols=65  Identities=17%  Similarity=0.154  Sum_probs=47.9

Q ss_pred             ecCcccccc--cCchhHHHHHHHHHcCCcEEEecceeeecccCCC-eEEcCCC-cEEecCEEEEccCCCC
Q 017664          171 HRGPKLLEF--VGSRASQIALDWLTSKKVEVILNQSVTLNTISDG-LIETSSG-ETIDTDCHFMCTGKAM  236 (368)
Q Consensus       171 ~~~~~~l~~--~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~v~~~~g-~~i~~d~vi~a~G~~p  236 (368)
                      +++.++.|.  -...+.+.+.+.+++.||+++++++|..|+ +++ .+.+.++ ..+.+|.||+|||-.+
T Consensus        73 e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~-~~~~~v~~~~~~~~~~a~~vIlAtGG~s  141 (376)
T TIGR03862        73 GSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQ-GGTLRFETPDGQSTIEADAVVLALGGAS  141 (376)
T ss_pred             CCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEe-CCcEEEEECCCceEEecCEEEEcCCCcc
Confidence            344455552  344677888999999999999999999982 223 5665433 4699999999999764

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.92  E-value=0.076  Score=50.95  Aligned_cols=34  Identities=50%  Similarity=0.668  Sum_probs=30.6

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      +.++++|+|+|..|+++|..|. +|++|+++|++.
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4578999999999999999987 599999999975

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=93.68  E-value=0.18  Score=45.32  Aligned_cols=34  Identities=32%  Similarity=0.364  Sum_probs=29.7

Q ss_pred             CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCce
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYF   50 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~   50 (368)
                      .+|.|||+|.=|-+.|..|. +|++|.+.-+++..
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~   36 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEI   36 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHH
Confidence            57999999999999999997 58999999887643

>PRK06475 salicylate hydroxylase; Provisional

Probab=93.67  E-value=0.14  Score=48.32  Aligned_cols=56  Identities=29%  Similarity=0.364  Sum_probs=38.9

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-cCchhHHHHHHHHHcCCc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF-VGSRASQIALDWLTSKKV  197 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~-~~~~~~~~~~~~l~~~gv  197 (368)
                      ++|+|||+|+.|+-+|..|.+  .+.+|+++++.+.+... ..-.+.....+.|++.|+
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~--~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl   59 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAA--RGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGV   59 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCccCcCCccceeChhHHHHHHHCCC
Confidence            689999999999999999885  58899999988754321 111223344455555554

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=93.67  E-value=0.11  Score=48.76  Aligned_cols=54  Identities=13%  Similarity=0.179  Sum_probs=45.0

Q ss_pred             CchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCC
Q 017664          181 GSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       181 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      +..+...+.+.+++ |++++.++.|..++.+++  .+++.+|+.+.+|.||+|+|..
T Consensus       134 p~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~  189 (381)
T TIGR03197       134 PPQLCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQ  189 (381)
T ss_pred             hHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcc
Confidence            34667777788888 999999999999876655  5778888779999999999965

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=93.60  E-value=0.078  Score=44.12  Aligned_cols=33  Identities=33%  Similarity=0.290  Sum_probs=25.7

Q ss_pred             CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      ++|.|||.|+.|+..|..|+ .|++|+.+|.++.
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            47999999999999999987 5999999998875

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=93.57  E-value=0.27  Score=45.15  Aligned_cols=63  Identities=14%  Similarity=0.052  Sum_probs=40.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeeccc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTI  210 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~  210 (368)
                      +.++.++.|-..+.|+|...    | ..+++...++.    -..+....+++.+......++.+..+..++.
T Consensus       138 ~~~~~~lsGP~~A~Eva~~~----p-t~~~ia~~~~~----~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl  200 (342)
T TIGR03376       138 GIPCGVLSGANLANEVAKEK----F-SETTVGYRDPA----DFDVDARVLKALFHRPYFRVNVVDDVAGVEI  200 (342)
T ss_pred             CCCeEEeeCcchHHHHHcCC----C-ceEEEEeCCCc----chHHHHHHHHHHhCCCCEEEEEcCCcccchh
Confidence            45677777777766666532    1 23444433210    0036788899999988899998888876664

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.54  E-value=0.084  Score=48.38  Aligned_cols=47  Identities=40%  Similarity=0.564  Sum_probs=39.4

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceee
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRA   59 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~   59 (368)
                      .+..+|+||||.|..=-..|.+.. .|.+|+=+|+++++|..|..+.-
T Consensus         5 lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSm   52 (547)
T KOG4405|consen    5 LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSM   52 (547)
T ss_pred             CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceee
Confidence            456899999999988877776665 49999999999999999977653

>PRK07395 L-aspartate oxidase; Provisional

Probab=93.46  E-value=0.57  Score=46.22  Aligned_cols=51  Identities=14%  Similarity=0.119  Sum_probs=33.6

Q ss_pred             hHHHHHHHHHc-CCcEEEecceeeecccCC--C---eE-EcCCCc--EEecCEEEEccCC
Q 017664          184 ASQIALDWLTS-KKVEVILNQSVTLNTISD--G---LI-ETSSGE--TIDTDCHFMCTGK  234 (368)
Q Consensus       184 ~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~--~---~v-~~~~g~--~i~~d~vi~a~G~  234 (368)
                      +...+.+.+++ .||++++++.+.++..++  +   ++ ...+|+  .+.++.||+|||-
T Consensus       136 i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG  195 (553)
T PRK07395        136 IVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGG  195 (553)
T ss_pred             HHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCC
Confidence            34445555554 488998888888775542  3   23 234554  4789999999995

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=93.39  E-value=0.11  Score=48.37  Aligned_cols=46  Identities=22%  Similarity=0.354  Sum_probs=39.0

Q ss_pred             cEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHH
Q 017664          255 RLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLM  303 (368)
Q Consensus       255 ~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l  303 (368)
                      .+.+|+.+.+ +.+|+|++||+++...  ....|...|-.+|+.|++..
T Consensus       438 ri~~d~~~~t-~i~gLy~aGdGAG~ar--gI~~Aaa~Gi~~A~~i~~k~  483 (486)
T COG2509         438 RIKVDEDLST-SIKGLYPAGDGAGLAR--GIVSAAADGIKAAEGIARKY  483 (486)
T ss_pred             eEeeccccee-eecceEEccccccccc--hhHHHhhhhHHHHHHHHHHh
Confidence            5788988666 8999999999998754  56789999999999998754

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=93.38  E-value=0.083  Score=43.74  Aligned_cols=31  Identities=35%  Similarity=0.374  Sum_probs=0.0

Q ss_pred             cEEEECCChHHHHHHHHhhc-CCcEEEEcCCC
Q 017664           18 KVVVIGGGVGGSLLAYHIQS-FADVVLIDEKE   48 (368)
Q Consensus        18 ~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~   48 (368)
                      +|.|||+|..|...|..+.. |++|+++|+++
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~   32 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP   32 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=93.26  E-value=0.11  Score=42.42  Aligned_cols=34  Identities=38%  Similarity=0.329  Sum_probs=28.2

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      .+.+|+|+|+|.+|..|+..|. .|++++++|...
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            4679999999999999999887 499999999864

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=93.25  E-value=0.17  Score=39.66  Aligned_cols=34  Identities=24%  Similarity=0.386  Sum_probs=29.7

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCc-EEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFAD-VVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~-v~lie~~~   48 (368)
                      +..+++|||+|-+|-+++++|. .|.+ |+|+.|+.
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~   46 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP   46 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence            4679999999999999999997 5776 99999874

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.16  E-value=0.12  Score=46.50  Aligned_cols=37  Identities=35%  Similarity=0.295  Sum_probs=31.6

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      |+...+|.|||+|.-|...|..|. +|++|+++|+++.
T Consensus         1 ~~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (292)
T PRK07530          1 MMAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD   38 (292)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            344568999999999999999887 5999999998753

>PRK06847 hypothetical protein; Provisional

Probab=93.01  E-value=0.22  Score=46.34  Aligned_cols=36  Identities=36%  Similarity=0.450  Sum_probs=31.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL  176 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~  176 (368)
                      .++|+|||+|++|+-+|..|.+  .+.+|+++++.+.+
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~--~g~~v~v~E~~~~~   39 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRR--AGIAVDLVEIDPEW   39 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCC
Confidence            5689999999999999999985  58899999987653

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=92.94  E-value=0.43  Score=40.74  Aligned_cols=73  Identities=18%  Similarity=0.162  Sum_probs=48.6

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEc
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIET  217 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~  217 (368)
                      ++++|+|||||..|..=+..|.+  .+.+|+++.+.          +...+.+......++++....    +        
T Consensus        24 ~~~~VLVVGGG~VA~RK~~~Ll~--~gA~VtVVap~----------i~~el~~l~~~~~i~~~~r~~----~--------   79 (223)
T PRK05562         24 NKIKVLIIGGGKAAFIKGKTFLK--KGCYVYILSKK----------FSKEFLDLKKYGNLKLIKGNY----D--------   79 (223)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEcCC----------CCHHHHHHHhCCCEEEEeCCC----C--------
Confidence            36799999999999988887775  57899998743          223344445556677664321    1        


Q ss_pred             CCCcEEecCEEEEccCCC
Q 017664          218 SSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       218 ~~g~~i~~d~vi~a~G~~  235 (368)
                       .+..-.+++||.||+-.
T Consensus        80 -~~dl~g~~LViaATdD~   96 (223)
T PRK05562         80 -KEFIKDKHLIVIATDDE   96 (223)
T ss_pred             -hHHhCCCcEEEECCCCH
Confidence             11223489999998743

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.91  E-value=0.65  Score=44.67  Aligned_cols=83  Identities=17%  Similarity=0.130  Sum_probs=57.5

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEc
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIET  217 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~  217 (368)
                      .++++.|+|.|.+|.-+|..|.+  .|.+|++.++.+..       ......+.+++.|+.++.+....    +      
T Consensus        13 ~~~~i~v~G~G~sG~a~a~~L~~--~G~~V~~~D~~~~~-------~~~~~~~~l~~~gi~~~~~~~~~----~------   73 (458)
T PRK01710         13 KNKKVAVVGIGVSNIPLIKFLVK--LGAKVTAFDKKSEE-------ELGEVSNELKELGVKLVLGENYL----D------   73 (458)
T ss_pred             cCCeEEEEcccHHHHHHHHHHHH--CCCEEEEECCCCCc-------cchHHHHHHHhCCCEEEeCCCCh----H------
Confidence            37899999999999988888874  57899998876531       11122344777899887653210    0      


Q ss_pred             CCCcEEecCEEEEccCCCCCchhhh
Q 017664          218 SSGETIDTDCHFMCTGKAMASSWLR  242 (368)
Q Consensus       218 ~~g~~i~~d~vi~a~G~~p~~~~~~  242 (368)
                         ..-++|.||.++|..|..+.+.
T Consensus        74 ---~~~~~dlVV~Spgi~~~~p~~~   95 (458)
T PRK01710         74 ---KLDGFDVIFKTPSMRIDSPELV   95 (458)
T ss_pred             ---HhccCCEEEECCCCCCCchHHH
Confidence               0124899999999988766554

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=92.89  E-value=0.14  Score=49.10  Aligned_cols=35  Identities=37%  Similarity=0.487  Sum_probs=27.7

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCC-CeEEEEecCcc
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPD-KKVILVHRGPK  175 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~-~~v~~i~~~~~  175 (368)
                      +|+|||||..|.-.|..|++..+. .+|+++++...
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~   36 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDI   36 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCC
Confidence            589999999999999999987665 79999997753

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK06184 hypothetical protein; Provisional

Probab=92.84  E-value=0.21  Score=48.70  Aligned_cols=35  Identities=43%  Similarity=0.658  Sum_probs=30.9

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL  176 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~  176 (368)
                      ..|+|||+|++|+-+|..|.+  .+.+|+++++.+.+
T Consensus         4 ~dVlIVGaGpaGl~~A~~La~--~Gi~v~viE~~~~~   38 (502)
T PRK06184          4 TDVLIVGAGPTGLTLAIELAR--RGVSFRLIEKAPEP   38 (502)
T ss_pred             CcEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCC
Confidence            469999999999999999985  58999999988765

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=92.82  E-value=0.22  Score=46.75  Aligned_cols=57  Identities=37%  Similarity=0.402  Sum_probs=43.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC-cccccc-cCchhHHHHHHHHHcCCc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRG-PKLLEF-VGSRASQIALDWLTSKKV  197 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~-~~~l~~-~~~~~~~~~~~~l~~~gv  197 (368)
                      ..+|+|||+|+.|+-+|..|.+  .+.+|+++++. ..+.+. ....+.....+.|++.|+
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~--~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~   60 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALAR--AGLDVTLLERAPRELLERGRGIALSPNALRALERLGL   60 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHh--CCCcEEEEccCccccccCceeeeecHhHHHHHHHcCC
Confidence            3579999999999999999985  58999999998 333332 233456667778888887

>TIGR00518 alaDH alanine dehydrogenase

Probab=92.69  E-value=0.14  Score=47.60  Aligned_cols=34  Identities=35%  Similarity=0.391  Sum_probs=29.8

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      ...+++|||+|.+|+.+|..|+ .|.+|+++|+++
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            3467999999999999999998 499999999864

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=92.67  E-value=0.19  Score=47.62  Aligned_cols=37  Identities=27%  Similarity=0.440  Sum_probs=33.4

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL  176 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~  176 (368)
                      ++++|||+|.+|+-.|..|.++.|..++++++.+++.
T Consensus         1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~   37 (444)
T COG1232           1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRV   37 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCC
Confidence            4799999999999999999998888999999988654

>PRK07804 L-aspartate oxidase; Provisional

Probab=92.64  E-value=0.21  Score=49.08  Aligned_cols=50  Identities=10%  Similarity=0.036  Sum_probs=36.8

Q ss_pred             CCcEEeCCCeeecCCCCeEEecccCCC--C-ccc----hHHHHHHHHHHHHHHHHHHH
Q 017664          253 RGRLMVDENLRVRGFKNVFAIGDITDI--P-EIK----QGYLAQKHALVTAKNLKKLM  303 (368)
Q Consensus       253 ~g~i~vd~~~~~~~~~~ifa~GD~~~~--~-~~~----~~~~a~~~g~~aa~~i~~~l  303 (368)
                      .|.+.||.++|| +.|++||+|+|++.  . ...    ....+.-.|+.+++++....
T Consensus       357 ~GGi~vd~~~~t-~i~GLyAaGe~~~~g~hGa~~l~~~sl~~~~v~G~~ag~~aa~~~  413 (541)
T PRK07804        357 CGGVVTDVYGRT-SVPGLYAAGEVACTGVHGANRLASNSLLEGLVVGERAGAAAAAHA  413 (541)
T ss_pred             CCCEEECCCCcc-cCCCeEEcccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhh
Confidence            478999999998 79999999999742  1 111    22356777888888887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	368
2woi_A	495	Trypanothione Reductase From Trypanosoma Brucei Len		2e-10
2wba_A	492	Properties Of Trypanothione Reductase From T. Bruce		2e-10
1aog_A	485	Trypanosoma Cruzi Trypanothione Reductase (Oxidized		7e-06
1bzl_A	486	Crystal Structure Of Trypanosoma Cruzi Trypanothion		7e-06
1gxf_A	492	Crystal Structure Of Trypanosoma Cruzi Trypanothion		8e-06
1nda_A	491	The Structure Of Trypanosoma Cruzi Trypanothione Re		2e-05
1ebd_A	455	Dihydrolipoamide Dehydrogenase Complexed With The B		3e-05
3o0h_A	484	Crystal Structure Of Glutathione Reductase From Bar		6e-05
2eq7_A	455	Crystal Structure Of Lipoamide Dehydrogenase From T		8e-05
4emw_A	436	Crystal Structure Of Staphylococcus Aureus Bound Wi		2e-04
4em3_A	437	Crystal Structure Of Staphylococcus Aureus Bound Wi		2e-04
4eqx_A	437	Crystal Structure Of The C43s Mutant Of Staphylococ		2e-04
1yqz_A	438	Structure Of Coenzyme A-Disulfide Reductase From St		2e-04
4eqs_A	437	Crystal Structure Of The Y419f Mutant Of Staphyloco		2e-04
4eqr_A	437	Crystal Structure Of The Y361f Mutant Of Staphyloco		2e-04
4eqw_A	437	Crystal Structure Of The Y361f, Y419f Mutant Of Sta		3e-04
3ef6_A	410	Crystal Structure Of Toluene 2,3-Dioxygenase Reduct		4e-04
1fl2_A	310	Catalytic Core Component Of The Alkylhydroperoxide		6e-04

>pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei Length = 495

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 83/178 (46%), Gaps = 6/178 (3%)
Query: 106 DYVVVATGHVESVPK-SRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEI-AVDFP 163
           D++++ATG    +P     E      + F   +    VL VGGG   VE AG   A   P
Sbjct: 157 DHILLATGSWPQMPAIPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPP 216
Query: 164 DKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQS---VTLNTISDGLIETSSG 220
             KV L +R   +L        +     LT+  +E++ N++   V+LNT     +   SG
Sbjct: 217 GGKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESG 276
Query: 221 ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITD 278
           +T+D D   M  G+   ++ L+   +   L  +G + VDE  R     N++AIGDITD
Sbjct: 277 KTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTN-VPNIYAIGDITD 333

>pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei Length = 492

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 83/178 (46%), Gaps = 6/178 (3%)
Query: 106 DYVVVATGHVESVPK-SRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEI-AVDFP 163
           D++++ATG    +P     E      + F   +    VL VGGG   VE AG   A   P
Sbjct: 154 DHILLATGSWPQMPAIPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPP 213
Query: 164 DKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQS---VTLNTISDGLIETSSG 220
             KV L +R   +L        +     LT+  +E++ N++   V+LNT     +   SG
Sbjct: 214 GGKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESG 273
Query: 221 ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITD 278
           +T+D D   M  G+   ++ L+   +   L  +G + VDE  R     N++AIGDITD
Sbjct: 274 KTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTN-VPNIYAIGDITD 330

>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form) Length = 485

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 85/182 (46%), Gaps = 15/182 (8%)
Query: 106 DYVVVATG---HVESVPKSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDF 162
           +++++A+G   H+ ++P    E      + F   +    VL VGGG   VE AG      
Sbjct: 153 EHILLASGSWPHMPNIPG--IEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYK 210
Query: 163 P-DKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQS---VTLNTISDGLIETS 218
           P D +V L +RG  +L        +     LT+  ++++  ++   V LN      +   
Sbjct: 211 PKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFE 270
Query: 219 SGETIDTDCHFMCTGKAMASSWLRETILKDS--LDGRGRLMVDENLRVRGFKNVFAIGDI 276
           SG+ +D D   M  G++  +  L+   L+++  +   G + VDE  R     N++AIGD+
Sbjct: 271 SGKKMDFDLVMMAIGRSPRTKDLQ---LQNAGVMIKNGGVQVDEYSRTN-VSNIYAIGDV 326
Query: 277 TD 278
           T+
Sbjct: 327 TN 328

>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With Trypanothione, And The Structure- Based Discovery Of New Natural Product Inhibitors Length = 486

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 85/182 (46%), Gaps = 15/182 (8%)
Query: 106 DYVVVATG---HVESVPKSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDF 162
           +++++A+G   H+ ++P    E      + F   +    VL VGGG   VE AG      
Sbjct: 154 EHILLASGSWPHMPNIPG--IEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYK 211
Query: 163 P-DKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQS---VTLNTISDGLIETS 218
           P D +V L +RG  +L        +     LT+  ++++  ++   V LN      +   
Sbjct: 212 PKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFE 271
Query: 219 SGETIDTDCHFMCTGKAMASSWLRETILKDS--LDGRGRLMVDENLRVRGFKNVFAIGDI 276
           SG+ +D D   M  G++  +  L+   L+++  +   G + VDE  R     N++AIGD+
Sbjct: 272 SGKKMDFDLVMMAIGRSPRTKDLQ---LQNAGVMIKNGGVQVDEYSRTN-VSNIYAIGDV 327
Query: 277 TD 278
           T+
Sbjct: 328 TN 329

>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With The Inhibitor Quinacrine Mustard Length = 492

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 85/182 (46%), Gaps = 15/182 (8%)
Query: 106 DYVVVATG---HVESVPKSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDF 162
           +++++A+G   H+ ++P    E      + F   +    VL VGGG   VE AG      
Sbjct: 155 EHILLASGSWPHMPNIPG--IEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYK 212
Query: 163 P-DKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQS---VTLNTISDGLIETS 218
           P D +V L +RG  +L        +     LT+  ++++  ++   V LN      +   
Sbjct: 213 PKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFE 272
Query: 219 SGETIDTDCHFMCTGKAMASSWLRETILKDS--LDGRGRLMVDENLRVRGFKNVFAIGDI 276
           SG+ +D D   M  G++  +  L+   L+++  +   G + VDE  R     N++AIGD+
Sbjct: 273 SGKKMDFDLVMMAIGRSPRTKDLQ---LQNAGVMIKNGGVQVDEYSRTN-VSNIYAIGDV 328
Query: 277 TD 278
           T+
Sbjct: 329 TN 330

>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase In The Oxidized And Nadph Reduced State Length = 491

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 84/182 (46%), Gaps = 15/182 (8%)
Query: 106 DYVVVATG---HVESVPKSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDF 162
           + +++A+G   H+ ++P    E      + F   +    VL VGGG   VE AG      
Sbjct: 154 ENILLASGSWPHMPNIPG--IEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYK 211
Query: 163 P-DKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQS---VTLNTISDGLIETS 218
           P D +V L +RG  +L        +     LT+  ++++  ++   V LN      +   
Sbjct: 212 PKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFE 271
Query: 219 SGETIDTDCHFMCTGKAMASSWLRETILKDS--LDGRGRLMVDENLRVRGFKNVFAIGDI 276
           SG+ +D D   M  G++  +  L+   L+++  +   G + VDE  R     N++AIGD+
Sbjct: 272 SGKKMDFDLVMMAIGRSPRTKDLQ---LQNAGVMIKNGGVQVDEYSRTN-VSNIYAIGDV 327
Query: 277 TD 278
           T+
Sbjct: 328 TN 329

>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding Domain Of The Dihydrolipoamide Acetylase Length = 455

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 83/189 (43%), Gaps = 10/189 (5%)
Query: 101 QTFVYDYVVVATGH--VESVPKSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEI 158
           QT+ +   ++ATG   +E      + R+          +   S++++GGG  G+EL G  
Sbjct: 130 QTYTFKNAIIATGSRPIELPNFKFSNRILDSTGALNLGEVPKSLVVIGGGYIGIEL-GTA 188
Query: 159 AVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQ-SVTLNTISDGLIET 217
             +F  K  IL   G  L  F    A+ I    L  K VEV+ N  +       DG+  T
Sbjct: 189 YANFGTKVTILEGAGEILSGFEKQMAA-IIKKRLKKKGVEVVTNALAKGAEEREDGVTVT 247
Query: 218 --SSGE--TIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAI 273
             ++GE  TID D   +  G+   +  L    +   +  RG + VD+  R     N+FAI
Sbjct: 248 YEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTS-VPNIFAI 306
Query: 274 GDITDIPEI 282
           GDI   P +
Sbjct: 307 GDIVPGPAL 315

>pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella Henselae Length = 484

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 95/206 (46%), Gaps = 10/206 (4%)
Query: 78  SNVKIVVSTAVSITD-TEVVTAGGQTFVYDYVVVATGH---VESVPKSRTERLSQYEKDF 133
           SNV I  S AV + + T  ++  G+    + +++ATG      S  K     L+  E  F
Sbjct: 127 SNVHIYESRAVFVDEHTLELSVTGERISAEKILIATGAKIVSNSAIKGSDLCLTSNEI-F 185
Query: 134 EKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLT 193
           +  K   S++IVGGG  GVE A          K  L+HRG  +L        Q+  D + 
Sbjct: 186 DLEKLPKSIVIVGGGYIGVEFAN--IFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMV 243
Query: 194 SKKVEVILNQSVTLNTISDGLIET--SSGETIDTDCHFMCTGKAMASSWLRETILKDSLD 251
           +K + +I   +V+    ++       ++G+TI  D   + TG+   ++ L        ++
Sbjct: 244 AKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVN 303
Query: 252 GRGRLMVDENLRVRGFKNVFAIGDIT 277
             G ++VDE +      +++A+GD+T
Sbjct: 304 EFGAVVVDEKMTTN-VSHIWAVGDVT 328

>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8 With Psbdo Length = 455

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 81/186 (43%), Gaps = 8/186 (4%)
Query: 100 GQTFVYDYVVVATGHVESVP---KSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAG 156
           G+     Y+++ATG    +P   +   ER+    +     +    +++VGGG  G+EL  
Sbjct: 125 GEELEARYILIATGSAPLIPPWAQVDYERVVTSTEALSFPEVPKRLIVVGGGVIGLELG- 183
Query: 157 EIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVT--LNTISDGL 214
            +       +VI++    ++L  +    S+ A      + + +     VT  +       
Sbjct: 184 -VVWHRLGAEVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGAR 242
Query: 215 IETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIG 274
           +E   GE ++ D   +  G+   +  L       S D RGR+ VDE+LR R   +++AIG
Sbjct: 243 VELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRTR-VPHIYAIG 301
Query: 275 DITDIP 280
           D+   P
Sbjct: 302 DVVRGP 307

>pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Etvc-Coa Length = 436

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 133 FEKVKSANSVLIVGGGPTGVELAGEIAVD--FPDKKVILVHRGPKLLEFVGSRASQIALD 190
           F K    + VL+VG G   +E+   +      P     L+HR  K+ + + +  +Q  LD
Sbjct: 141 FIKANQVDKVLVVGAGYVSLEVLENLYERGLHP----TLIHRSDKINKLMDADMNQPILD 196
Query: 191 WLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSL 250
            L  +++   LN+ +  N I+   I   SG+    D      G    S ++  + +K  L
Sbjct: 197 ELDKREIPYRLNEEI--NAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIK--L 252
Query: 251 DGRGRLMVDENLRVRGFKNVFAIGDI 276
           D +G + V++        N++AIGDI
Sbjct: 253 DRKGFIPVNDKFET-NVPNIYAIGDI 277

>pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Mevs-Coa Length = 437

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 133 FEKVKSANSVLIVGGGPTGVELAGEIAVD--FPDKKVILVHRGPKLLEFVGSRASQIALD 190
           F K    + VL+VG G   +E+   +      P     L+HR  K+ + + +  +Q  LD
Sbjct: 141 FIKANQVDKVLVVGAGYVSLEVLENLYERGLHP----TLIHRSDKINKLMDADMNQPILD 196
Query: 191 WLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSL 250
            L  +++   LN+ +  N I+   I   SG+    D      G    S ++  + +K  L
Sbjct: 197 ELDKREIPYRLNEEI--NAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIK--L 252
Query: 251 DGRGRLMVDENLRVRGFKNVFAIGDI 276
           D +G + V++        N++AIGDI
Sbjct: 253 DRKGFIPVNDKFET-NVPNIYAIGDI 277

>pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 133 FEKVKSANSVLIVGGGPTGVELAGEIAVD--FPDKKVILVHRGPKLLEFVGSRASQIALD 190
           F K    + VL+VG G   +E+   +      P     L+HR  K+ + + +  +Q  LD
Sbjct: 141 FIKANQVDKVLVVGAGYVSLEVLENLYERGLHP----TLIHRSDKINKLMDADMNQPILD 196
Query: 191 WLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSL 250
            L  +++   LN+ +  N I+   I   SG+    D      G    S ++  + +K  L
Sbjct: 197 ELDKREIPYRLNEEI--NAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIK--L 252
Query: 251 DGRGRLMVDENLRVRGFKNVFAIGDI 276
           D +G + V++        N++AIGDI
Sbjct: 253 DRKGFIPVNDKFET-NVPNIYAIGDI 277

>pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From Staphylococcus Aureus Refined At 1.54 Angstrom Resolution Length = 438

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 133 FEKVKSANSVLIVGGGPTGVELAGEIAVD--FPDKKVILVHRGPKLLEFVGSRASQIALD 190
           F K    + VL+VG G   +E+   +      P     L+HR  K+ + + +  +Q  LD
Sbjct: 142 FIKANQVDKVLVVGAGYVSLEVLENLYERGLHP----TLIHRSDKINKLMDADMNQPILD 197
Query: 191 WLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSL 250
            L  +++   LN+ +  N I+   I   SG+    D      G    S ++  + +K  L
Sbjct: 198 ELDKREIPYRLNEEI--NAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIK--L 253
Query: 251 DGRGRLMVDENLRVRGFKNVFAIGDI 276
           D +G + V++        N++AIGDI
Sbjct: 254 DRKGFIPVNDKFET-NVPNIYAIGDI 278

>pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 133 FEKVKSANSVLIVGGGPTGVELAGEIAVD--FPDKKVILVHRGPKLLEFVGSRASQIALD 190
           F K    + VL+VG G   +E+   +      P     L+HR  K+ + + +  +Q  LD
Sbjct: 141 FIKANQVDKVLVVGAGYVSLEVLENLYERGLHP----TLIHRSDKINKLMDADMNQPILD 196
Query: 191 WLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSL 250
            L  +++   LN+ +  N I+   I   SG+    D      G    S ++  + +K  L
Sbjct: 197 ELDKREIPYRLNEEI--NAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIK--L 252
Query: 251 DGRGRLMVDENLRVRGFKNVFAIGDI 276
           D +G + V++        N++AIGDI
Sbjct: 253 DRKGFIPVNDKFET-NVPNIYAIGDI 277

>pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 133 FEKVKSANSVLIVGGGPTGVELAGEIAVD--FPDKKVILVHRGPKLLEFVGSRASQIALD 190
           F K    + VL+VG G   +E+   +      P     L+HR  K+ + + +  +Q  LD
Sbjct: 141 FIKANQVDKVLVVGAGYVSLEVLENLYERGLHP----TLIHRSDKINKLMDADMNQPILD 196
Query: 191 WLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSL 250
            L  +++   LN+ +  N I+   I   SG+    D      G    S ++  + +K  L
Sbjct: 197 ELDKREIPYRLNEEI--NAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIK--L 252
Query: 251 DGRGRLMVDENLRVRGFKNVFAIGDI 276
           D +G + V++        N++AIGDI
Sbjct: 253 DRKGFIPVNDKFET-NVPNIYAIGDI 277

>pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 133 FEKVKSANSVLIVGGGPTGVELAGEIAVD--FPDKKVILVHRGPKLLEFVGSRASQIALD 190
           F K    + VL+VG G   +E+   +      P     L+HR  K+ + + +  +Q  LD
Sbjct: 141 FIKANQVDKVLVVGAGYVSLEVLENLYERGLHP----TLIHRSDKINKLMDADMNQPILD 196
Query: 191 WLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSL 250
            L  +++   LN+ +  N I+   I   SG+    D      G    S ++  + +K  L
Sbjct: 197 ELDKREIPYRLNEEI--NAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIK--L 252
Query: 251 DGRGRLMVDENLRVRGFKNVFAIGDI 276
           D +G + V++        N++AIGDI
Sbjct: 253 DRKGFIPVNDKFET-NVPNIYAIGDI 277

>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase Length = 410

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 105/259 (40%), Gaps = 27/259 (10%)
Query: 41  VVLIDEKEYFEITWASL-RAVVEPSFAVRSVINHGDYLSNVKIVVSTAVSITDTEVVTA- 98
           + LI ++ +      SL +AV++ S     ++   D+    +I + T   +T  +V T  
Sbjct: 30  ISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVTALDVQTRT 89
Query: 99  ----GGQTFVYDYVVVATG---HVESVPKSRTE---RLSQYEKDFEKVK----SANSVLI 144
                G T   D +V+ATG      ++P S+      L  Y  D + ++    SA  +LI
Sbjct: 90  ISLDDGTTLSADAIVIATGSRARTMALPGSQLPGVVTLRTY-GDVQVLRDSWTSATRLLI 148
Query: 145 VGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQS 204
           VGGG  G E+A   A        IL      L+  +G R        LT   V+V L   
Sbjct: 149 VGGGLIGCEVA-TTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTG 207
Query: 205 VTLNTISDGLIE---TSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDEN 261
           V +    +G +E    S G +   D   +C G   A    R+  L        R ++ ++
Sbjct: 208 V-VGFSGEGQLEQVMASDGRSFVADSALICVGAEPADQLARQAGLACD-----RGVIVDH 261
Query: 262 LRVRGFKNVFAIGDITDIP 280
                 K VFA+GD+   P
Sbjct: 262 CGATLAKGVFAVGDVASWP 280

>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide Reductase Ahpf From E.Coli Length = 310

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 89/204 (43%), Gaps = 31/204 (15%)
Query: 94  EVVTAGGQTFVYDYVVVATG------HVESVPKSRTERLSQYEKDFEKVKSANSVLIVGG 147
           ++ TA G       ++VATG      +V    + RT+ ++        +     V ++GG
Sbjct: 93  QIETASGAVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGG 152
Query: 148 GPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGS-RASQIALDWLTS-KKVEVILNQSV 205
           G +GVE A ++A        I+ H    LLEF    +A Q+  D L S K V++ILN   
Sbjct: 153 GNSGVEAAIDLA-------GIVEH--VTLLEFAPEMKADQVLQDKLRSLKNVDIILNAQT 203
Query: 206 TLNTISDG--LIETSSGETIDTDCH-------FMCTGKAMASSWLRETILKDSLDGRGRL 256
           T     DG  ++     + +  D H       F+  G    ++WL   + ++ +   G +
Sbjct: 204 T-EVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRM---GEI 259
Query: 257 MVDENLRVRGFKNVFAIGDITDIP 280
           ++D        K VFA GD T +P
Sbjct: 260 IIDAKCETN-VKGVFAAGDCTTVP 282

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	368
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	4e-37
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	5e-36
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	1e-34
1yqz_A	438	Coenzyme A disulfide reductase; oxidoreductase; HE	1e-21
1fcd_A	401	Flavocytochrome C sulfide dehydrogenase (flavin- b	1e-21
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	4e-21
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	6e-19
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	1e-17
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	2e-17
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	9e-17
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	1e-16
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	3e-16
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	7e-16
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	2e-15
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	2e-15
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	7e-15
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	4e-14
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	5e-14
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	2e-13
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	2e-13
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	2e-12
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	3e-12
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	1e-11
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	3e-11
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	2e-10
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	2e-10
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	2e-10
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	2e-10
4dna_A	463	Probable glutathione reductase; structural genomic	4e-10
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	5e-10
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	7e-10
4fk1_A	304	Putative thioredoxin reductase; structural genomic	8e-10
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	1e-09
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	1e-09
1fec_A	490	Trypanothione reductase; redox-active center, oxid	2e-09
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	4e-09
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	4e-09
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	2e-08
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	2e-08
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	4e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	9e-08
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	9e-08
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	1e-07
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	2e-07
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	2e-07
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	4e-07
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	1e-06
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	2e-06
3r9u_A	315	Thioredoxin reductase; structural genomics, center	4e-06
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	4e-06
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	8e-06
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	8e-06
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	1e-05
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	2e-05
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	2e-05
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	5e-05
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	8e-05
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	1e-04
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	2e-04
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	3e-04
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	3e-04
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	4e-04
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	4e-04
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	5e-04
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	5e-04

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score =  137 bits (348), Expect = 4e-37
 Identities = 79/398 (19%), Positives = 126/398 (31%), Gaps = 81/398 (20%)

Query: 16  KKKVVVIGGGVGGSLLAYHIQ----SFADVVLIDEKEYF----EITW--ASLRAVVEPSF 65
              VV++G G GG   AY ++    S  +V LI   +YF       W     +   + +F
Sbjct: 4   SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAF 63

Query: 66  AVRSVINHGDYLSNVKIVVSTAVSITDTE---VVTAGGQTFVYDYVVVATGHVESVPKSR 122
            +R  +        +  +  +A  I D E   +  A G T  YDY+++ATG     PK  
Sbjct: 64  PIRHYVER----KGIHFIAQSAEQI-DAEAQNITLADGNTVHYDYLMIATG-----PKLA 113

Query: 123 TERLSQYEKDFEKVKSANSV------------------LIVGGGPTGVELAG---EIA-- 159
            E +   +     V+S  +V                   IV G   G    G   E A  
Sbjct: 114 FENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAMI 173

Query: 160 ---------VDFPDKKVILVHRGPKLLE---FVGSRASQIALDWLTSKKVEVILNQSVT- 206
                    +         +   P +          +  I    L  + +E   N  VT 
Sbjct: 174 VASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIEAYTNCKVTK 233

Query: 207 ------LNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDE 260
                   T  D   ET     +      M          +     +   +  G ++VDE
Sbjct: 234 VEDNKMYVTQVDEKGETIKEMVLPVK-FGMMIPAFKGVPAVAGV--EGLCNPGGFVLVDE 290

Query: 261 NLRVRGFKNVFAIGDITDIPEI----------KQGYLAQKHALVTAKNLKKLMMGRNKGT 310
           + R + + N+FA G    IP +          K GY+ +        N+K  + G  +  
Sbjct: 291 HQRSKKYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIKADLEG--RKG 348

Query: 311 MATYKPGYPIALVSLGRREGVAHFPFLTISGRIPGWIK 348
             T      +A   +G R G A      +  R      
Sbjct: 349 EQTMGTWNAVAFADMGDR-GAAFIALPQLKPRKVDVFA 385

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score =  134 bits (339), Expect = 5e-36
 Identities = 60/393 (15%), Positives = 112/393 (28%), Gaps = 78/393 (19%)

Query: 17  KKVVVIGGGVGGSLLAYHIQ----SFADVVLIDEKEYFEIT---------WASLRAVVEP 63
            KV+V+GG  G    AY ++    S ADV +I++  +                +  +   
Sbjct: 2   TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVD 61

Query: 64  SFAVRSVINHGDYLSNVKIVVSTAVSITDTE---VVT----AGGQTFVYDYVVVATG--- 113
              +   +        ++    T   I D +   V             YDYV+V  G   
Sbjct: 62  ---LSEALPE----KGIQFQEGTVEKI-DAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHL 113

Query: 114 ----------------HVESVPKSRTERLSQYE------------KDFEKVKSANSVLIV 145
                             E   K R E+L  ++            +            + 
Sbjct: 114 ATELVKGWDKYGYSVCEPEFATKLR-EKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVP 172

Query: 146 GGGPTGVELAGEIAVDFPDK----------KVILVHRGPKLLEFVGSRASQIALDWLTSK 195
                      E+++                V +   G  L + +   + +         
Sbjct: 173 NADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGEYLSD-LSPNSRKAVASIYNQL 231

Query: 196 KVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGR 255
            ++++ N  +    I +  I    G TI  D   +       +  L+ +   D +D  G 
Sbjct: 232 GIKLVHNFKIK--EIREHEIVDEKGNTIPAD-ITILLPPYTGNPALKNSTP-DLVDDGGF 287

Query: 256 LMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYK 315
           +  D N+    + NV+A+GD   +   K GYLA     + A++L   +      T     
Sbjct: 288 IPTDLNMVSIKYDNVYAVGDANSMTVPKLGYLAVMTGRIAAQHLANRLGVP---TKVDKY 344

Query: 316 PGYPIALVSLGRREGVAHFPFLTISGRIPGWIK 348
               + +               T  G       
Sbjct: 345 YPTIVCVADNPYEGYAVSVKDDTWYGGTVSIAD 377

>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438

 Score = 94.9 bits (237), Expect = 1e-21
 Identities = 63/342 (18%), Positives = 123/342 (35%), Gaps = 65/342 (19%)

Query: 17  KKVVVIGGGVGGSLLAYHI---QSFADVVLIDEKEYFEITWASLRAVVEPSFA------- 66
            K+VV+G   GG+  A  I      +D+++ ++                 SFA       
Sbjct: 2   PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRD-------------MSFANCALPYV 48

Query: 67  VRSVINHGDYL-----------SNVKIVVST-AVSI-TDTEVVTA----GGQTFV--YDY 107
           +  V+    Y              + +      ++I  + + V+       + F   YD 
Sbjct: 49  IGEVVEDRRYALAYTPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDK 108

Query: 108 VVVATGHVESVPKSRTER---LSQYE-----KDFEKVKSANSVLIVGGGPTGVELAGEIA 159
           ++++ G   +     ++    L   E       F K    + VL+VG G   +E+  E  
Sbjct: 109 LILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVL-E-N 166

Query: 160 VDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSS 219
           +        L+HR  K+ + + +  +Q  LD L  +++   LN+ +    I+   I   S
Sbjct: 167 LYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIN--AINGNEITFKS 224

Query: 220 GETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGD---I 276
           G+    D      G    S ++  + +K  LD +G + V++        N++AIGD    
Sbjct: 225 GKVEHYDMIIEGVGTHPNSKFIESSNIK--LDRKGFIPVNDKFETN-VPNIYAIGDIATS 281

Query: 277 TDIPEIKQGYL-----AQKHALVTAKNLKKLMMGRNKGTMAT 313
                     +     A + A + A+ +        KG +  
Sbjct: 282 HYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGN 323

>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401

 Score = 94.1 bits (234), Expect = 1e-21
 Identities = 74/361 (20%), Positives = 122/361 (33%), Gaps = 56/361 (15%)

Query: 16  KKKVVVIGGGVGGSLLAYHIQSF---ADVVLIDEKEYFEI----TW--ASLRAVVEPSFA 66
            +KVVV+GGG GG+  A +I+      +V LI+    +             R +      
Sbjct: 2   GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHG 61

Query: 67  VRSVINHGDYLSNVKIVVSTAVSITDTE---VVTAGGQTFVYDYVVVATGHV---ESVPK 120
              +  HG     +++V  +A  I D +   V TAGG  F YD  VVA G     + +  
Sbjct: 62  YDGLRAHG-----IQVVHDSATGI-DPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEG 115

Query: 121 SRTE----------RLSQYEKDFEKVKSANS---VLIVG------GGPTGVELAGEIAVD 161
              E             Q     ++++       V+I          P   E A ++A  
Sbjct: 116 YSEEAAAKLPHAWKAGEQTAILRKQLEDMADGGTVVIAPPAAPFRCPPGPYERASQVAYY 175

Query: 162 F----PDKKVILVHRGPKL--LEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG-- 213
                P  KVI++                 ++      +  +E        +  +  G  
Sbjct: 176 LKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTENAMIEWHPGPDSAVVKVDGGEM 235

Query: 214 LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVD-ENLRVRGFKNVFA 272
           ++ET+ G+    D          A    +   L    +  G   VD +       K +  
Sbjct: 236 MVETAFGDEFKAD-VINLIPPQRAGKIAQIAGL---TNDAGWCPVDIKTFESSIHKGIHV 291

Query: 273 IGDITD-IPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYKPGYPIALVSLGRREGV 331
           IGD +   P  K GY A     V A  +  L+ G   GT  +Y      ++++      V
Sbjct: 292 IGDASIANPMPKSGYSANSQGKVAAAAVVVLLKGEEPGT-PSYL-NTCYSILAPAYGISV 349

Query: 332 A 332
           A
Sbjct: 350 A 350

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score = 93.8 bits (234), Expect = 4e-21
 Identities = 68/350 (19%), Positives = 131/350 (37%), Gaps = 75/350 (21%)

Query: 17  KKVVVIGGGVGGSLLAYHI---QSFADVVLIDEKEYFEITWASLRAVVEPSFA------- 66
           +K+VV+GG  GG+ +A  +       ++++++  EY              SFA       
Sbjct: 37  RKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEY-------------ISFANCGLPYY 83

Query: 67  VRSVINHGDYL-----------SNVKIVVST-AVSI-TDTEVVTA----GGQTFV--YDY 107
           +  VI     L            N+ I V +  V I  + + +T       +T+   YD 
Sbjct: 84  IGGVITERQKLLVQTVERMSKRFNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDV 143

Query: 108 VVVATG------------HVESVPKSRT----ERLSQYEKDFEKVKSANSVLIVGGGPTG 151
           ++++ G              +++   R     +R+    K +   K      ++GGG  G
Sbjct: 144 LILSPGAKPIVPSIPGIEEAKALFTLRNVPDTDRI----KAYIDEKKPRHATVIGGGFIG 199

Query: 152 VELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTIS 211
           VE+  E  +     +V LV    +++  +    +    + + +  VE++    V     +
Sbjct: 200 VEMV-E-NLRERGIEVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVELVFEDGVDALEEN 257

Query: 212 DGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVF 271
             ++   SG  I TD   +  G    SS  +   L   L  RG + V+E  +     +++
Sbjct: 258 GAVVRLKSGSVIQTDMLILAIGVQPESSLAKGAGLA--LGVRGTIKVNEKFQT-SDPHIY 314

Query: 272 AIGD---ITDIPEIKQGYL-----AQKHALVTAKNLKKLMMGRNKGTMAT 313
           AIGD   + D     +  +     A +   + A  +        KGT+ T
Sbjct: 315 AIGDAIEVKDFVTETETMIPLAWPANRQGRMLADIIHGHTDSLYKGTLGT 364

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472

 Score = 86.8 bits (216), Expect = 6e-19
 Identities = 71/356 (19%), Positives = 121/356 (33%), Gaps = 75/356 (21%)

Query: 15  EKKKVVVIGGGVGGSLLAYHI---QSFADVVLIDEKEYFEITWASLRAVVEPSFA----- 66
             K VVVIG    G   A         A V +ID+                 S+      
Sbjct: 2   SLKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASR-------------ISYGGCGIP 48

Query: 67  --VRSVINHGDYLS-----------------NVKIVVST-AVSI-TDTEVVTA----GGQ 101
             V   +++ + L                  +V+ +V T A +I      V       G+
Sbjct: 49  YYVSGEVSNIESLQATPYNVVRDPEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGE 108

Query: 102 TFV--YDYVVVATGHVESVPK------SRTERLSQYE-----KDFEKVKSANSVLIVGGG 148
                YD +V+A G   + P       +    ++  +     +        +  +IVGGG
Sbjct: 109 RRTLKYDKLVLALGSKANRPPVEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGG 168

Query: 149 PTGVELAGEIAVDFPDKKVILVHRGPKLL-EFVGSRASQIALDWLTSKKVEVILNQSVTL 207
             G+E+A     D       +V    +++  F     SQ+    L    V V   + V  
Sbjct: 169 FIGLEMA-VSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVR 227

Query: 208 NTISDGLIE--TSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVR 265
               +G +    +   T+D D   +  G +  +   R+  L+  LD RG ++VD  +R  
Sbjct: 228 LEGENGKVARVITDKRTLDADLVILAAGVSPNTQLARDAGLE--LDPRGAIIVDTRMRT- 284

Query: 266 GFKNVFAIGD---ITDIPEIKQGYL-----AQKHALVTAKNLKKLMMGRNKGTMAT 313
              ++FA GD   I ++   K G+      A +   V   NL         G + +
Sbjct: 285 SDPDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQGRVIGTNLADGDA-TFPGAVGS 339

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480

 Score = 83.0 bits (206), Expect = 1e-17
 Identities = 61/347 (17%), Positives = 115/347 (33%), Gaps = 68/347 (19%)

Query: 16  KKKVVVIGGGVGGSLLAYHI---QSFADVVLIDEKEYFEITWASLRAVVEPSFA------ 66
               V+IGG   G   A  I      A+VV +++ E               S+A      
Sbjct: 36  SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEI-------------YSYAQCGLPY 82

Query: 67  -VRSVINHGDYL-----------SNVKIVVST-AVSI-TDTEVVTA----GGQTFV--YD 106
            +   I   + L             +   V      + T+ ++V A        F   YD
Sbjct: 83  VISGAIASTEKLIARNVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYD 142

Query: 107 YVVVATGHVESVPK------SRTERLSQYE-----KDFEKVKSANSVLIVGGGPTGVELA 155
            +++ATG    +P+           L             +      V I+GGG  G+E+A
Sbjct: 143 RLLIATGVRPVMPEWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMA 202

Query: 156 GEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVT-LNTISDGL 214
            E       KKV ++ R   +        ++          +E++ N++V          
Sbjct: 203 -E-TFVELGKKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNERVE 260

Query: 215 IETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIG 274
              +   T   D   +  G    + +L  T ++   + +G + V+  ++    ++V+A G
Sbjct: 261 AVETDKGTYKADLVLVSVGVKPNTDFLEGTNIR--TNHKGAIEVNAYMQT-NVQDVYAAG 317

Query: 275 D---ITDIPEIKQGYL-----AQKHALVTAKNLKKLMMGRNKGTMAT 313
           D      + +    ++     A K   +   N+        KGT+ T
Sbjct: 318 DCATHYHVIKEIHDHIPIGTTANKQGRLAGLNMLDKRR-AFKGTLGT 363

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452

 Score = 82.1 bits (204), Expect = 2e-17
 Identities = 62/350 (17%), Positives = 123/350 (35%), Gaps = 79/350 (22%)

Query: 16  KKKVVVIGGGVGGSLLAYHI---QSFADVVLIDEKEYFEITWASLRAVVEPSFA------ 66
             K+V+IG    G   A         A++ LID++                 +       
Sbjct: 2   SLKIVIIGASFAGISAAIASRKKYPQAEISLIDKQAT-------------VGYLSGGLSA 48

Query: 67  -VRSVINHGDYL----------SNVKIVVST-AVSI-TDTEVVTA----GGQTFVYDYVV 109
                IN                 ++++++   V++  + +++        Q + YD ++
Sbjct: 49  YFNHTINELHEARYITEEELRRQKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLI 108

Query: 110 VATGHVESVPK-----------SRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEI 158
           +ATG  +   +            +   LS        ++++ +V ++G GP G+E   + 
Sbjct: 109 LATGASQFSTQIRGSQTEKLLKYKF--LSGALAAVPLLENSQTVAVIGAGPIGMEAI-D- 164

Query: 159 AVDFPDKKVILVHRGPKLL------EFVGSRASQIALDWLTSKKVEVILNQSVT-LNTIS 211
            +    K V +      LL      E             L  + V     ++V  +   +
Sbjct: 165 FLVKMKKTVHVFESLENLLPKYFDKEM-----VAEVQKSLEKQAVIFHFEETVLGIEETA 219

Query: 212 DGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVF 271
           +G++  +S + I  D            ++L + I     +    + VD  L+     NVF
Sbjct: 220 NGIVLETSEQEISCDSGIFALNLHPQLAYLDKKI---QRNLDQTIAVDAYLQT-SVPNVF 275

Query: 272 AIGD---ITDIPEIKQGYL-----AQKHALVTAKNLKKLMMGRNKGTMAT 313
           AIGD   + + P  +  Y      A +  LV A NL++    R  G++ T
Sbjct: 276 AIGDCISVMNEPVAETFYAPLVNNAVRTGLVVANNLEEKTH-RFIGSLRT 324

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score = 80.7 bits (200), Expect = 9e-17
 Identities = 67/366 (18%), Positives = 128/366 (34%), Gaps = 88/366 (24%)

Query: 17  KKVVVIGGGVGGSLLAYHI---QSFADVVLIDEKEYFEITWASLRAVVEPSFA------- 66
           KK+++IGG  GG+  A         A++++ +  EY              SFA       
Sbjct: 2   KKILIIGGVAGGASAAARARRLSETAEIIMFERGEY-------------VSFANCGLPYH 48

Query: 67  VRSVINHGDYL-----------SNVKIVVST-AVSI-TDTEVVTA----GGQTFV--YDY 107
           +   I     L            NV++ V    V+I    ++VT      G  +   YD 
Sbjct: 49  ISGEIAQRSALVLQTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDT 108

Query: 108 VVVATGHVESVPK------SRTERLSQYE-----KDFEKVKSANSVLIVGGGPTGVELAG 156
           ++++ G    VP         T  L             ++ +     +VGGG  G+E+  
Sbjct: 109 LLLSPGAAPIVPPIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMM- 167

Query: 157 EIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVT---------- 206
           E ++     K  L+    +++  V    +  A   +  + V++ L  +++          
Sbjct: 168 E-SLHHLGIKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHV 226

Query: 207 ---------LNTISDGLIE--TSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGR 255
                     +    G +    S+GE ++TD   M  G    +   R+  L   +   G 
Sbjct: 227 ASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLA--IGELGG 284

Query: 256 LMVDENLRVRGFKNVFAIGD---ITDIPEIKQGYL-----AQKHALVTAKNLKKLMMGRN 307
           + V+  ++      ++A+GD     D    +   +     A +   + A N+      R 
Sbjct: 285 IKVNAMMQT-SDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMFGREE-RY 342

Query: 308 KGTMAT 313
           +GT  T
Sbjct: 343 QGTQGT 348

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452

 Score = 80.2 bits (199), Expect = 1e-16
 Identities = 64/353 (18%), Positives = 122/353 (34%), Gaps = 84/353 (23%)

Query: 18  KVVVIGGGVGGSLLAYHI---QSFADVVLIDEKEYFEITWASLRAVVEPSFA-------V 67
           KV+V+G    G+            ADV   +  +               SF        +
Sbjct: 2   KVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDN-------------ISFLSCGIALYL 48

Query: 68  RSVINHGDYLS------------NVKIVVST-AVSI-TDTEVVTA----GGQTFV--YDY 107
              I + D                  + +     ++  +T+ +        +     YD 
Sbjct: 49  GKEIKNNDPRGLFYSSPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDK 108

Query: 108 VVVATGHVESVPK-----------SRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAG 156
           +++ TG   +VP             +    +  +K FE+   A ++ I+G G  G ELA 
Sbjct: 109 LIMTTGSKPTVPPIPGIDSSRVYLCKN--YNDAKKLFEEAPKAKTITIIGSGYIGAELA- 165

Query: 157 EIAVDFPDKKVILVHRGPKLL------EFVGSRASQIALDWLTSKKVEVILNQSVTLNTI 210
           E A    +  V L+    ++L      EF     + I      +  V ++L   V     
Sbjct: 166 E-AYSNQNYNVNLIDGHERVLYKYFDKEF-----TDILAKDYEAHGVNLVLGSKVAAFEE 219

Query: 211 SDGLIE--TSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFK 268
            D  I   T  G+ I +D   +C G    +  L+  +   ++   G ++ DE +     +
Sbjct: 220 VDDEIITKTLDGKEIKSDIAILCIGFRPNTELLKGKV---AMLDNGAIITDEYMH-SSNR 275

Query: 269 NVFAIGD---ITDIPEIKQGYL-----AQKHALVTAKNLKKLMMGRNKGTMAT 313
           ++FA GD   +   P     Y+     A +   +   NL +  + ++ GT ++
Sbjct: 276 DIFAAGDSAAVHYNPTNSNAYIPLATNAVRQGRLVGLNLTEDKV-KDMGTQSS 327

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493

 Score = 79.0 bits (195), Expect = 3e-16
 Identities = 68/364 (18%), Positives = 115/364 (31%), Gaps = 75/364 (20%)

Query: 8   STAAGLVEKKKVVVIGGGVGGSLLAYHI--QSF-ADVVLIDE------------KEYFEI 52
                       ++IGGG      A  I  +   A V+++ E            KE +  
Sbjct: 3   VPQDKAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFS 62

Query: 53  TWASLRAVVE---------------PSFAVRSVINHGDYLSNVKIVVSTAVSITDTE--- 94
              ++   +                PSF V +          V ++    V   D     
Sbjct: 63  DDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNM 122

Query: 95  VVTAGGQTFVYDYVVVATGHVESVPKS------------------RTERLSQYEKDFEKV 136
           V    G    Y+  ++ATG     P+S                  R   +  +    +  
Sbjct: 123 VKLNDGSQITYEKCLIATG---GTPRSLSAIDRAGAEVKSRTTLFRK--IGDFRSLEKIS 177

Query: 137 KSANSVLIVGGGPTGVELAGEIAVDFP--DKKVILVHRGPKLLE-FVGSRASQIALDWLT 193
           +   S+ I+GGG  G ELA  +         +VI +      +   +    S   ++ + 
Sbjct: 178 REVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVR 237

Query: 194 SKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLD 251
            + V+V+ N  V    +S G  LI+   G  ++TD      G        +   L+   D
Sbjct: 238 REGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSD 297

Query: 252 GRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYL-------AQKHALVTAKNLKKLMM 304
             G   V+  L+ R   N++  GD     +IK G         A     +  +N    M 
Sbjct: 298 FGG-FRVNAELQAR--SNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGEN----MT 350

Query: 305 GRNK 308
           G  K
Sbjct: 351 GAAK 354

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449

 Score = 77.5 bits (192), Expect = 7e-16
 Identities = 61/349 (17%), Positives = 117/349 (33%), Gaps = 75/349 (21%)

Query: 15  EKKKVVVIGGGVGGSLLAYHI---QSFADVVLIDEKEYFEITWASLRAVVEPSFA----- 66
             KKVV+IGGG  G   A  +   +   DV + +  E+              S A     
Sbjct: 2   SLKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEW-------------VSHAPCGIP 48

Query: 67  --VRSVINHGDYLS----------NVKIVVST-AVSI-TDTEVVTAGGQTFV--YDYVVV 110
             V  +      +            + + ++   + + T    V   G      +DY+V 
Sbjct: 49  YVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVF 108

Query: 111 ATGHVESVPK------SRTERLSQYE-----KDFEKVKSANSVLIVGGGPTGVELAGEIA 159
           A G    VP                      +++ +     +V+I+GGG  G+E+A E A
Sbjct: 109 ANGASPQVPAIEGVNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMA-E-A 166

Query: 160 VDFPDKKVILVHRGPKLL------EFVGSRASQIALDWLTSKKVEVILNQSVT-LNTISD 212
                K V ++ RG ++L      E      + I  + L  K V + L +    +     
Sbjct: 167 FAAQGKNVTMIVRGERVLRRSFDKEV-----TDILEEKLK-KHVNLRLQEITMKIEGEER 220

Query: 213 GLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFA 272
                +       +   + TG        ++  ++  +   G +  +E ++    +NV+A
Sbjct: 221 VEKVVTDAGEYKAELVILATGIKPNIELAKQLGVR--IGETGAIWTNEKMQT-SVENVYA 277

Query: 273 IGD---ITDIPEIKQGYL-----AQKHALVTAKNLKKLMMGRNKGTMAT 313
            GD      +   ++ ++       K   V   N+    +    G + T
Sbjct: 278 AGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIAGKEL-HFPGVLGT 325

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447

 Score = 76.0 bits (188), Expect = 2e-15
 Identities = 61/350 (17%), Positives = 118/350 (33%), Gaps = 79/350 (22%)

Query: 18  KVVVIGGGVGGSLLAYHI---QSFADVVLIDEKEYFEITWASLRAVVEPSFA-------V 67
           KV+V+G   GG      +      A++   ++ ++              SF        +
Sbjct: 2   KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDF-------------ISFLSAGMQLYL 48

Query: 68  RSVINHGDYL----------SNVKIVVST-AVSI-TDTEVVTA----GGQTFV--YDYVV 109
              +   + +            V +  +T   +I      VT      G+  V  YD ++
Sbjct: 49  EGKVKDVNSVRYMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLI 108

Query: 110 VATGHVESVPK------SRTERLSQYE-----KDFEKVKSANSVLIVGGGPTGVELAGEI 158
           ++ G V                +   +     K        N+V+++G G  G+E A E 
Sbjct: 109 ISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAA-E- 166

Query: 159 AVDFPDKKVILVHRGPKLL------EFVGSRASQIALDWLTSKKVEVILNQSVT-LNTIS 211
           A     KKV ++    + L      EF     + +  + + +  + +   ++V       
Sbjct: 167 AFAKAGKKVTVIDILDRPLGVYLDKEF-----TDVLTEEMEANNITIATGETVERYEGDG 221

Query: 212 DGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVF 271
                 +     D D   +  G    ++WL+ T+    L   G +  DE +R     +VF
Sbjct: 222 RVQKVVTDKNAYDADLVVVAVGVRPNTAWLKGTL---ELHPNGLIKTDEYMRT-SEPDVF 277

Query: 272 AIGD---ITDIPEIKQGYL-----AQKHALVTAKNLKKLMMGRNKGTMAT 313
           A+GD   I   P   +  +     A+K      KNL++ +     G   +
Sbjct: 278 AVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPVK-PFPGVQGS 326

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385

 Score = 74.2 bits (183), Expect = 7e-15
 Identities = 53/316 (16%), Positives = 109/316 (34%), Gaps = 63/316 (19%)

Query: 15  EKKKVVVIGGGVGGSLLAYHIQSFA-DVVLI-DEK----------EYF--EITWASLRAV 60
           +  K++++G G  G   A        D+ +I  EK          E      +   +  +
Sbjct: 8   KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDI-LI 66

Query: 61  VEPSFAVRSVINHGDYLSNVKIVVSTAVSITDTE---VVTAGGQTFVYDYVVVATGHVES 117
            +  +  ++         N+K++ S   +  D     V    G+   Y+ +++A+G + +
Sbjct: 67  KKNDWYEKN---------NIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIAN 117

Query: 118 VPKS---------RTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVI 168
             K           +       K  ++ K+     I+GGG  G+ELA  I          
Sbjct: 118 KIKVPHADEIFSLYS--YDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDS--GTPAS 173

Query: 169 LVHRGPKLLE-FVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDC 227
           +       LE  +         D L    +++  N +               G+ I + C
Sbjct: 174 IGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNF-----------EEMGDLIRSSC 222

Query: 228 HFMCTG-KAMASSWLRETILKDS-LDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQG 285
                G K           +KD+ +  +  ++V++++     K+++A GD+ +      G
Sbjct: 223 VITAVGVKP------NLDFIKDTEIASKRGILVNDHMET-SIKDIYACGDVAEFYGKNPG 275

Query: 286 YL--AQKHALVTAKNL 299
            +  A K   V   N 
Sbjct: 276 LINIANKQGEVAGLNA 291

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404

 Score = 72.2 bits (178), Expect = 4e-14
 Identities = 59/336 (17%), Positives = 105/336 (31%), Gaps = 73/336 (21%)

Query: 19  VVVIGGGVGGSLLAYHI--QSFA-DVVLIDE------------KEYFEITWASLRAVVEP 63
           V++ G G  G  +A  +    +   + LI++            K Y +        +  P
Sbjct: 4   VLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRP 63

Query: 64  SFAVRSVINHGDYLSNVKIVVSTAVSITDTE---VVTAGGQTFVYDYVVVATGHVESVPK 120
               +           ++++    VSI D E   ++ A G    Y ++V+ATG       
Sbjct: 64  EKFFQD--------QAIELISDRMVSI-DREGRKLLLASGTAIEYGHLVLATG------- 107

Query: 121 SRTERLSQYEKDFEKV----------------KSANSVLIVGGGPTGVELAGEIAVDFPD 164
           +R   L         V                     V+++G G  G+E A   A     
Sbjct: 108 ARNRMLDVPNASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAA-TARAK-G 165

Query: 165 KKVILVHRGPKLLE-FVGSRASQIALDWLTSKKVEVILNQSVT-LNTISDGL--IETSSG 220
            +V +V   P+++   V    S    D  +   + +      T +    D +  +  S G
Sbjct: 166 LEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDG 225

Query: 221 ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIP 280
            T+  D   +  G                L     ++VD+ L      ++ AIGD     
Sbjct: 226 NTLPCDLVVVGVGVIPNVEIAAAA----GLPTAAGIIVDQQLLT-SDPHISAIGDCALFE 280

Query: 281 EIKQGYL--------AQKHALVTAKNLKKLMMGRNK 308
            ++ G          A   A   A      + G  K
Sbjct: 281 SVRFGETMRVESVQNATDQARCVAAR----LTGDAK 312

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408

 Score = 71.5 bits (176), Expect = 5e-14
 Identities = 62/332 (18%), Positives = 111/332 (33%), Gaps = 69/332 (20%)

Query: 16  KKKVVVIGGGVGGSLLAYHI--QSFA-DVVLIDE------------KEYFEITWASLRAV 60
           K  VVV+G G+        +    +   + ++ +            K++  +       +
Sbjct: 7   KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDF--MAHGDAEKI 64

Query: 61  VEPSFAVRSVINHGDYLSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPK 120
                    V    ++L  V      +       V  + G+T  Y  +V+ATG       
Sbjct: 65  RLDCKRAPEV----EWLLGVTA---QSFDPQAHTVALSDGRTLPYGTLVLATG------- 110

Query: 121 SRTERLSQYEKDFEKV----------------KSANSVLIVGGGPTGVELAGEIAVDFPD 164
           +    L   +     V                +  + +LIVGGG  G+ELA   A     
Sbjct: 111 AAPRALPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAA-TARTA-G 168

Query: 165 KKVILVHRGPKLLE-FVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETI 223
             V LV   P+L+     +  +     +  ++ V++   +SVT     DG++    G  I
Sbjct: 169 VHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVT--GSVDGVVLLDDGTRI 226

Query: 224 DTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIK 283
             D   +  G     +  R   L    DG   + VD   R     +V+A+GD+T      
Sbjct: 227 AADMVVVGIGVLANDALARAAGLACD-DG---IFVDAYGRT-TCPDVYALGDVTRQRNPL 281

Query: 284 QGYL--------AQKHALVTAKNLKKLMMGRN 307
            G          AQ   +  A++    ++   
Sbjct: 282 SGRFERIETWSNAQNQGIAVARH----LVDPT 309

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410

 Score = 70.3 bits (173), Expect = 2e-13
 Identities = 77/331 (23%), Positives = 117/331 (35%), Gaps = 65/331 (19%)

Query: 19  VVVIGGGVGGSLLAYHI--QSFA-DVVLIDE------------KEYFEITWASLRAVVEP 63
           V +IG GVGG   A  +  + F   + LI +            K   + +      + E 
Sbjct: 5   VAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEA 64

Query: 64  SFAVRSVINHGDYLSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRT 123
            +   + I   D L+  ++   TA+ +    +    G T   D +V+ATG       SR 
Sbjct: 65  DWYGEARI---DMLTGPEV---TALDVQTRTISLDDGTTLSADAIVIATG-------SRA 111

Query: 124 ERLSQYEKDFEKV----------------KSANSVLIVGGGPTGVELAGEIAVDFPDKKV 167
             ++        V                 SA  +LIVGGG  G E+A   A       V
Sbjct: 112 RTMALPGSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVAT-TARKL-GLSV 169

Query: 168 ILVHRGPKLLE-FVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGL--IETSSGETID 224
            ++  G +LL   +G R        LT   V+V L   V   +    L  +  S G +  
Sbjct: 170 TILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFV 229

Query: 225 TDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQ 284
            D   +C G   A    R+      L     ++VD        K VFA+GD+   P    
Sbjct: 230 ADSALICVGAEPADQLARQA----GLACDRGVIVDHCGAT-LAKGVFAVGDVASWPLRAG 284

Query: 285 GYL-------AQKHALVTAKNLKKLMMGRNK 308
           G         AQ+ A   A      ++G+N 
Sbjct: 285 GRRSLETYMNAQRQAAAVAAA----ILGKNV 311

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319

 Score = 69.1 bits (170), Expect = 2e-13
 Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 34/158 (21%)

Query: 142 VLIVGGGPTGVE----LAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKV 197
           V+ +GGG +G      ++         K V ++   PK             +  +  + +
Sbjct: 158 VVTIGGGNSGAIAAISMSE-YV-----KNVTIIEYMPKY------MCENAYVQEIKKRNI 205

Query: 198 EVILNQSVTLNTISDG-------LIETSSGE--TIDTDCHFMCTGKAMASSWLRETILKD 248
             I+N +     + DG         + ++GE   I+TD  F+  G    +S+L+++ +K 
Sbjct: 206 PYIMN-AQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVK- 263

Query: 249 SLDGRGRLMVDENLR--VRGFKNVFAIGDITDIPEIKQ 284
            LD RG ++VD   R  V G   V+A GD+T      Q
Sbjct: 264 -LDERGYIVVDSRQRTSVPG---VYAAGDVTSGN-FAQ 296

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415

 Score = 67.2 bits (165), Expect = 2e-12
 Identities = 66/348 (18%), Positives = 105/348 (30%), Gaps = 74/348 (21%)

Query: 9   TAAGLVEKKKVVVIGGGVGGSLLAYHI--QSFA-DVVLIDE------------KEYFEIT 53
            +    E+  VV++G G GG+  A  +    F   V++I              KEY    
Sbjct: 2   ASEVQAERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLARE 61

Query: 54  WASLRAVVEPSFAVRSVINHGDYLSNVKIVVSTAVSITDTE---VVTAGGQTFVYDYVVV 110
               R  + P+               V++ +   V   D     V    G    Y  ++ 
Sbjct: 62  KTFERICIRPAQFWED--------KAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYGKLIW 113

Query: 111 ATGHVESVPKSRTERLSQYEKDFEKV-----------------KSANSVLIVGGGPTGVE 153
           ATG           RLS    D   V                   A + +++GGG  G+E
Sbjct: 114 ATG-------GDPRRLSCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLE 166

Query: 154 LAGEIAVDFPDKKVILVHRGPKLLE-FVGSRASQIALDWLTSKKVEVILNQSVTLNTISD 212
            A  +   F    V L+   P++L    G   S+       +  V++    ++       
Sbjct: 167 AAA-VLTKF-GVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDG 224

Query: 213 G---LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKN 269
                +    G  I  D   +  G       L          G   + VDE  R     +
Sbjct: 225 TKVTGVRMQDGSVIPADIVIVGIGIVPCVGALISA----GASGGNGVDVDEFCRT-SLTD 279

Query: 270 VFAIGDITDIP-EIKQGYL--------AQKHALVTAKNLKKLMMGRNK 308
           V+AIGD      +   G +        A   A   AK+    + G   
Sbjct: 280 VYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKD----ICGAPV 323

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431

 Score = 66.5 bits (163), Expect = 3e-12
 Identities = 51/341 (14%), Positives = 108/341 (31%), Gaps = 77/341 (22%)

Query: 19  VVVIGGGVGGSLLAYHI--QSFA-DVVLIDE------------KEYFEITWASLRAVVEP 63
           VV++G G+ G  +A+ +    +  ++ L+ +            K Y      +    +  
Sbjct: 7   VVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRT 66

Query: 64  SFAVRSVINHGDYLSNVKIVVSTAVSITDTE---VVTAGGQTFVYDYVVVATGHVESVPK 120
             A  +         N++++  T V+  + +   V+ + G+   YD +V+ATG       
Sbjct: 67  PDAYAA--------QNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATG------- 111

Query: 121 SRTERLSQYEKDF-------------------EKVKSANSVLIVGGGPTGVELAGEIAVD 161
            R   L                           ++ + N ++++GGG  G+E+A   A+ 
Sbjct: 112 GRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAA-TAIK 170

Query: 162 FPDKKVILVHRGPKLLE-FVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG-----LI 215
             +  V L+    ++LE       S           V++     V    +S        +
Sbjct: 171 A-NMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAV 229

Query: 216 ETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGD 275
               G  +  D      G                L     ++++E+++      + A+GD
Sbjct: 230 LCEDGTRLPADLVIAGIGLIPNCELASAA----GLQVDNGIVINEHMQT-SDPLIMAVGD 284

Query: 276 ITDIPEIKQGYL--------AQKHALVTAKNLKKLMMGRNK 308
                               A + A   A      + G+  
Sbjct: 285 CARFHSQLYDRWVRIESVPNALEQARKIAAI----LCGKVP 321

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Length = 310

 Score = 64.0 bits (157), Expect = 1e-11
 Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 35/155 (22%)

Query: 142 VLIVGGGPTGVE----LAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTS-KK 196
           V ++GGG +GVE    LAG I      + V L+   P++      +A Q+  D L S K 
Sbjct: 147 VAVIGGGNSGVEAAIDLAG-IV-----EHVTLLEFAPEM------KADQVLQDKLRSLKN 194

Query: 197 VEVILNQSVTLNTISDG-------LIETSSGET--IDTDCHFMCTGKAMASSWLRETILK 247
           V++ILN + T     DG         +  SG+   I+    F+  G    ++WL   +  
Sbjct: 195 VDIILN-AQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAV-- 251

Query: 248 DSLDGRGRLMVDENLR--VRGFKNVFAIGDITDIP 280
              +  G +++D      V+G   VFA GD T +P
Sbjct: 252 -ERNRMGEIIIDAKCETNVKG---VFAAGDCTTVP 282

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367

 Score = 63.0 bits (154), Expect = 3e-11
 Identities = 73/317 (23%), Positives = 123/317 (38%), Gaps = 63/317 (19%)

Query: 16  KKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYF-------------EITWASLRAVVE 62
             KVV++G G GG  LA  +    +V +ID++                 I    L     
Sbjct: 8   GSKVVIVGNGPGGFELAKQLSQTYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRL-FPYS 66

Query: 63  PSFAVRSVINHGDYLSNVKIVVSTAVSITDTE--VVTAGGQTFVYDYVVVATGHVESVPK 120
             +  +           ++I ++    + D    VV        YD +V+ATG     P+
Sbjct: 67  LDWYRK---------RGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGARAREPQ 117

Query: 121 S---------RT----ERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKV 167
                     RT    +R+ +       ++++   +I+GGG  G+ELAG +A       V
Sbjct: 118 IKGKEYLLTLRTIFDADRIKES------IENSGEAIIIGGGFIGLELAGNLAEA--GYHV 169

Query: 168 ILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDC 227
            L+HRG   L  +    S +  D L    V+  LN  +      +G++  ++   I+   
Sbjct: 170 KLIHRGAMFLG-LDEELSNMIKDMLEETGVKFFLNSELL-EANEEGVL--TNSGFIEGKV 225

Query: 228 HFMCTG-KAMASSWLRETILKDS-LD-GRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQ 284
                G            + + S +  GRG +++D+N R    K+V+AIGD  +   I  
Sbjct: 226 KICAIGIVP------NVDLARRSGIHTGRG-ILIDDNFRT-SAKDVYAIGDCAEYSGIIA 277

Query: 285 GYL--AQKHALVTAKNL 299
           G    A + A V A  L
Sbjct: 278 GTAKAAMEQARVLADIL 294

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484

 Score = 61.4 bits (150), Expect = 2e-10
 Identities = 52/243 (21%), Positives = 98/243 (40%), Gaps = 63/243 (25%)

Query: 78  SNVKIVVSTAVSITDTEV-VTAGGQTFVYDYVVVATG----------------------H 114
           SNV I  S AV + +  + ++  G+    + +++ATG                       
Sbjct: 127 SNVHIYESRAVFVDEHTLELSVTGERISAEKILIATGAKIVSNSAIKGSDLCLTSNEIFD 186

Query: 115 VESVPKSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAG---EIAVDFPDKKVILVH 171
           +E +PKS                    ++IVGGG  GVE A     + V        L+H
Sbjct: 187 LEKLPKS--------------------IVIVGGGYIGVEFANIFHGLGVK-----TTLLH 221

Query: 172 RGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVT-LNTISDGL-IETSSGETIDTDCHF 229
           RG  +L        Q+  D + +K + +I   +V+ + +  +   +  ++G+TI  D   
Sbjct: 222 RGDLILRNFDYDLRQLLNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVM 281

Query: 230 MCTGKAMASSWLRETILKDSLDGRGRLMVDENLR--VRGFKNVFAIGDITDIPE-----I 282
           + TG+   ++ L        ++  G ++VDE +   V    +++A+GD+T   +     I
Sbjct: 282 LATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNV---SHIWAVGDVTGHIQLTPVAI 338

Query: 283 KQG 285
              
Sbjct: 339 HDA 341

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Length = 384

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 64/323 (19%), Positives = 115/323 (35%), Gaps = 60/323 (18%)

Query: 15  EKKKVVVIGGGVGGSLLAYHIQSFA---DVVLI-DEK----------EYF--EITWASLR 58
           E+  +V+IG G+ G  LA   +       +++I  +             F        L 
Sbjct: 3   ERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLA 62

Query: 59  AVVEPSFAVRSVINHGDYLSNVKIVVSTAVSITDTE--VVTAGGQTFVYDYVVVATG--- 113
                + A +          N +I+  T V+  D     +  G +   Y  +V+A G   
Sbjct: 63  MAEPGAMAEQL---------NARILTHTRVTGIDPGHQRIWIGEEEVRYRDLVLAWGAEP 113

Query: 114 --------HVESVPKSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDK 165
                     +++       L  Y +  +       VL++G G  G E A +++      
Sbjct: 114 IRVPVEGDAQDALYPIND--LEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSG--GY 169

Query: 166 KVILVHRGPKLLE-FVGSRASQIALDWLTSKKVEVILNQSVT-LNTISDGL-IETSSGET 222
           ++ +V    +++   +   A++     L    V   L   +  L    +GL    S GE 
Sbjct: 170 QLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEV 229

Query: 223 IDTDCHFMCTGKAMASSWLR-ETIL-KDS-LD-GRGRLMVDENLRVRGFKNVFAIGDITD 278
           I  D      G       LR  T L   + L   RG ++VD +LR     N++A+GD  +
Sbjct: 230 IPCDLVVSAVG-------LRPRTELAFAAGLAVNRG-IVVDRSLRT-SHANIYALGDCAE 280

Query: 279 IPEIKQGYLA--QKHALVTAKNL 299
           +  +   Y+      A   A+ L
Sbjct: 281 VDGLNLLYVMPLMACARALAQTL 303

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 36/159 (22%)

Query: 142 VLIVGGGPTGVE----LAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTS-KK 196
           V ++GGG +GVE    LAG I      + V L+   P++      +A Q+  D + S K 
Sbjct: 358 VAVIGGGNSGVEAAIDLAG-IV-----EHVTLLEFAPEM------KADQVLQDKVRSLKN 405

Query: 197 VEVILNQSVTLNTISDG-------LIETSSGET--IDTDCHFMCTGKAMASSWLRETILK 247
           V++ILN + T     DG         +  SG+   +     F+  G    + WL   +  
Sbjct: 406 VDIILN-AQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGAL-- 462

Query: 248 DSLDGRGRLMVDENLR--VRGFKNVFAIGDITDIPEIKQ 284
              +  G +++D      V+G   VFA GD T +P  KQ
Sbjct: 463 -ERNRMGEIIIDAKCETSVKG---VFAAGDCTTVP-YKQ 496

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450

 Score = 60.6 bits (148), Expect = 2e-10
 Identities = 41/242 (16%), Positives = 83/242 (34%), Gaps = 63/242 (26%)

Query: 78  SNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATG---------------------HVE 116
           +NV ++   A    D + +   G+T   D++++ATG                      + 
Sbjct: 106 NNVDVIKGFA-RFVDAKTLEVNGETITADHILIATGGRPSHPDIPGVEYGIDSDGFFALP 164

Query: 117 SVPKSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAG---EIAVDFPDKKVILVHRG 173
           ++P+                     V +VG G  GVEL G    +          L    
Sbjct: 165 ALPER--------------------VAVVGAGYIGVELGGVINGLGAK-----THLFEMF 199

Query: 174 PKLLEFVGSRASQIALDWLTSKKVEVILNQSVT-LNTISDG--LIETSSGETIDTDCHFM 230
              L       S+  ++ + ++  ++  N     +   +DG   +E   G +   DC   
Sbjct: 200 DAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIW 259

Query: 231 CTGKAMASSWLRETILKDSLDGRGRLMVDENLR--VRGFKNVFAIGDITDIPE-----IK 283
             G+  A+  +         + +G ++VD+     +   + ++A+GD T   E     + 
Sbjct: 260 AIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNI---EGIYAVGDNTGAVELTPVAVA 316

Query: 284 QG 285
            G
Sbjct: 317 AG 318

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463

 Score = 59.8 bits (146), Expect = 4e-10
 Identities = 62/350 (17%), Positives = 105/350 (30%), Gaps = 126/350 (36%)

Query: 10  AAGLVEKKKVVVI-GGGVGG----------------SLLAYHIQSFADVVLIDEKEY-FE 51
           AA L   KKV +      GG                S  A H +        D   + + 
Sbjct: 24  AAAL--GKKVAIAEEFRYGGTCVIRGCVPKKLYVYASQFAEHFE--------DAAGFGWT 73

Query: 52  IT-----WASLRAVVEPSFAVRSVIN--HGDYLSN-----VKIVVSTAVSITDTEV-VTA 98
           +      WA L A      A    I    G Y         +I+ + A       V + A
Sbjct: 74  VGESRFDWAKLVA------AKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVKLLA 127

Query: 99  GGQTFVYDYVVVATG----------------------HVESVPKSRTERLSQYEKDFEKV 136
            G+T   + +V+A G                       + ++P+S               
Sbjct: 128 SGKTVTAERIVIAVGGHPSPHDALPGHELCITSNEAFDLPALPES--------------- 172

Query: 137 KSANSVLIVGGGPTGVELAG---EIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLT 193
                +LI GGG   VE A     + V        L++RG ++L        +     + 
Sbjct: 173 -----ILIAGGGYIAVEFANIFHGLGVK-----TTLIYRGKEILSRFDQDMRRGLHAAME 222

Query: 194 SKKVEVILNQSVT-LNTISDG--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKD-- 248
            K + ++    +  ++  +DG  +  T     I  D   +  G        R        
Sbjct: 223 EKGIRILCEDIIQSVSADADGRRVATTMKHGEIVADQVMLALG--------RMPNTNGLG 274

Query: 249 ------SLDGRGRLMVDENLR--VRGFKNVFAIGDITDIPE-----IKQG 285
                   +  G ++VD   R        ++A+GD+TD  +     I + 
Sbjct: 275 LEAAGVRTNELGAIIVDAFSRTST---PGIYALGDVTDRVQLTPVAIHEA 321

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495

 Score = 59.5 bits (145), Expect = 5e-10
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)

Query: 141 SVLIVGGGPTGVELAGEI--AVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVE 198
            VL VGGG   VE AG I  A   P  KV L +R   +L        +     LT+  +E
Sbjct: 193 RVLTVGGGFISVEFAG-IFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQLTANGIE 251

Query: 199 VILNQSVT-LNTISDGL--IETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGR 255
           ++ N++   ++  +DG   +   SG+T+D D   M  G+   ++ L+   +   L  +G 
Sbjct: 252 IMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGG 311

Query: 256 LMVDENLR--VRGFKNVFAIGDITDIPE-----IKQG 285
           + VDE  R  V    N++AIGDITD        I +G
Sbjct: 312 VQVDEFSRTNV---PNIYAIGDITDRLMLTPVAINEG 345

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523

 Score = 59.2 bits (144), Expect = 7e-10
 Identities = 44/217 (20%), Positives = 85/217 (39%), Gaps = 42/217 (19%)

Query: 89  SITDTEVVTAGGQTFVYDYVVVATGHVESVPK-----------SRTERLSQYEKDFEKVK 137
            + D   V A G+ F    +++A G                    T          +   
Sbjct: 159 KVIDNHTVEAAGKVFKAKNLILAVGAGPGTLDVPGVNAKGVFDHATLVEE-----LDYE- 212

Query: 138 SANSVLIVGGGPTGVELA------GEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDW 191
             ++V++VGG  T VE        G        ++ +++ R   L     +      LD 
Sbjct: 213 PGSTVVVVGGSKTAVEYGCFFNATG--------RRTVMLVRTEPLKLIKDNETRAYVLDR 264

Query: 192 LTSKKVEVILNQSVT-LNTISDGLIET------SSGETIDTDCHFMCTGKAMASSWLRET 244
           +  + +E+I   +VT +   ++G ++       +    I+TD  F+  G+   S+ L + 
Sbjct: 265 MKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKI 324

Query: 245 I-LKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIP 280
           + L   L  +G ++V+E L+     NV+A+GD+   P
Sbjct: 325 LGLD--LGPKGEVLVNEYLQT-SVPNVYAVGDLIGGP 358

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304

 Score = 58.3 bits (142), Expect = 8e-10
 Identities = 47/285 (16%), Positives = 96/285 (33%), Gaps = 60/285 (21%)

Query: 18  KVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYL 77
           ++ +       + +  +   F     I  +E+ EI    +                    
Sbjct: 31  QIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMK-----------------Y 73

Query: 78  SNVKIVVSTAVSITDT-----EVVTAGGQTFVYDYVVVATGHVESVP--KSRTERLSQ-- 128
            +V     T V IT       E+VT     ++ + V++ATG  E  P   +  E   +  
Sbjct: 74  PSVHYYEKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEEFPSIPNVREYYGKSL 133

Query: 129 --------YE-KDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF 179
                   +E KD         ++I+           ++  ++    +++   G +L   
Sbjct: 134 FSCPYCDGWELKDQP-------LIIISENEDHTLHMTKLVYNW-STDLVIATNGNEL--- 182

Query: 180 VGSRASQIALDWLTSKKVEVILNQSVTLNTISDGL--IETSSGETIDTDCHFMCTGKAMA 237
                SQ  +D L++K + VI     TL      L  +E  SG  I+    F+       
Sbjct: 183 -----SQTIMDELSNKNIPVITESIRTLQGEGGYLKKVEFHSGLRIERAGGFIVPTFFRP 237

Query: 238 SSWLRETILKDSLDGRGRLMVDENLR--VRGFKNVFAIGDITDIP 280
           + ++ +   +  L   G  ++D+  R   +    ++  G+ T   
Sbjct: 238 NQFIEQLGCE--LQSNGTFVIDDFGRTSEKN---IYLAGETTTQG 277

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 56/334 (16%), Positives = 109/334 (32%), Gaps = 86/334 (25%)

Query: 14  VEKKKVVVIGGGVGGSLLAYHIQSFA-DVVLIDEKEYFEI------TWASLRAVV----- 61
           ++   VVVIGGG  G    Y ++      V++D +            W SL         
Sbjct: 1   MDSVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEA--SPGGAWQHAWHSLHLFSPAGWS 58

Query: 62  ----------EPSFAVRSVINHGDYLS------NVKIVVSTAV-SITDTE----VVTAGG 100
                     +  +  R+ +    YL+       + ++    V  ++       VV   G
Sbjct: 59  SIPGWPMPASQGPYPARAEV--LAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDG 116

Query: 101 QTFVYDYVVVATGH-----VESVPKSRT---ERL--SQYE--KDFEKVKSANSVLIVGGG 148
           + ++   V+ ATG              +    +L  + Y     F  ++    V I+GGG
Sbjct: 117 RQWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTPAPFAGMR----VAIIGGG 172

Query: 149 PTGVELAGEIAVDFPDKKVILVHRGPKLL--EFVGSRASQIALDWLTSKKVEVILNQSV- 205
            +G ++  E++     +   +    P  L  +  G    + A +   +++     +    
Sbjct: 173 NSGAQILAEVSTV--AETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDLPPG 230

Query: 206 -----TLNT-------------------ISDGLIETSSGETIDTDCHFMCTGKAMASSWL 241
                 +                      S   ++ + G     D    CTG   A S L
Sbjct: 231 GFGDIVMVPPVLDARARGVLAAVPPPARFSPTGMQWADGTERAFDAVIWCTGFRPALSHL 290

Query: 242 RETILKDSLDGRGRLMVD-ENLRVRGFKNVFAIG 274
           +     D +  +G++ VD   LR     +V+ +G
Sbjct: 291 KG---LDLVTPQGQVEVDGSGLRALAVPSVWLLG 321

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297

 Score = 57.5 bits (140), Expect = 1e-09
 Identities = 33/220 (15%), Positives = 64/220 (29%), Gaps = 42/220 (19%)

Query: 79  NVKIVVSTAVSITDT----EVVTAGGQTFVYDYVVVATGHVESVP--KSRTERLSQ---- 128
            +  V         +     V   GG+      +++A G  + +P      ER       
Sbjct: 71  TIHWVEGRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDELPEIAGLRERWGSAVFH 130

Query: 129 ------YE-KDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVG 181
                 YE            + ++   P  +  A  +  D+ +      +   +      
Sbjct: 131 CPYCHGYELDQ-------GKIGVIAASPMAIHHALMLP-DWGE-TTFFTNGIVEP----- 176

Query: 182 SRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWL 241
             A Q AL  L ++ V V     +         +  + G +I     F      +   W+
Sbjct: 177 -DADQHAL--LAARGVRVE-TTRIR-EIAGHADVVLADGRSIALAGLFTQPKLRITVDWI 231

Query: 242 RETILKDSLDGRGR-LMVDENLR--VRGFKNVFAIGDITD 278
            +          G  ++ D   +   RG   +FA GD+  
Sbjct: 232 EKLGCAVEEGPMGSTIVTDPMKQTTARG---IFACGDVAR 268

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 40/157 (25%), Positives = 63/157 (40%), Gaps = 16/157 (10%)

Query: 141 SVLIVGGGPTGVELAGEI--AVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVE 198
             L VGGG   +E AG I  A      +V L +RG  +L    S   +   + L +  + 
Sbjct: 189 RALCVGGGYISIEFAG-IFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGIN 247

Query: 199 VILNQSVT-LNTISDGLIE--TSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGR 255
           V  +++   +   +DG       SG   D D   +  G+   S  L+       +   G 
Sbjct: 248 VRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGA 307

Query: 256 LMVDENLR--VRGFKNVFAIGDITDIPE-----IKQG 285
           + VD   +  V    N++AIGD+TD        I +G
Sbjct: 308 IKVDAYSKTNV---DNIYAIGDVTDRVMLTPVAINEG 341

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332

 Score = 56.4 bits (137), Expect = 4e-09
 Identities = 41/204 (20%), Positives = 74/204 (36%), Gaps = 33/204 (16%)

Query: 95  VVTAGGQTFVYDYVVVATGHVESVP-KSRTERLSQYE--------KDFEKVKSANSVLIV 145
            +    +T     V++  G+    P K   E   QYE         D +K      V I+
Sbjct: 102 KLVTNEETHYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHYFVDDLQKFAGRR-VAIL 160

Query: 146 GGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSV 205
           GGG + V+ A  +      K+V ++HR  K       RA + +++ L + KV V+     
Sbjct: 161 GGGDSAVDWALMLE-PIA-KEVSIIHRRDKF------RAHEHSVENLHASKVNVLTPFVP 212

Query: 206 TLNTISDGL-------IETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMV 258
                 D +       ++    E ++ D   +  G   +   ++   L      +  ++V
Sbjct: 213 AELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDIE---KNSIVV 269

Query: 259 DENLR--VRGFKNVFAIGDITDIP 280
              +   + G    FA GDI    
Sbjct: 270 KSTMETNIEG---FFAAGDICTYE 290

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463

 Score = 56.7 bits (138), Expect = 4e-09
 Identities = 46/250 (18%), Positives = 72/250 (28%), Gaps = 79/250 (31%)

Query: 78  SNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATG---------------------HVE 116
             +  V   A    D   +   GQ    D++V+ATG                      ++
Sbjct: 105 LGITRVDGHA-RFVDAHTIEVEGQRLSADHIVIATGGRPIVPRLPGAELGITSDGFFALQ 163

Query: 117 SVPKSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAG---EIAVDFPDKKVILVHRG 173
             PK                     V I+G G  G+ELAG       +     V +V   
Sbjct: 164 QQPKR--------------------VAIIGAGYIGIELAGLLRSFGSE-----VTVVALE 198

Query: 174 PKLLEFVGSRASQIALDWLTSKKVEVILNQSVT-LNTISDGL--IETSSGETIDTDCHFM 230
            +LL       S    + + ++ +E  L  +V  L   + G   +          D    
Sbjct: 199 DRLLFQFDPLLSATLAENMHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIW 258

Query: 231 CTGKAMASSWLRETILKD--------SLDGRGRLMVDENLR--VRGFKNVFAIGDITDIP 280
             G        R    +D         +   G +  D      V     V+A+GDIT   
Sbjct: 259 AVG--------RAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNV---PGVYALGDITGRD 307

Query: 281 E-----IKQG 285
           +     I  G
Sbjct: 308 QLTPVAIAAG 317

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 45/312 (14%), Positives = 84/312 (26%), Gaps = 73/312 (23%)

Query: 15  EKKKVVVIGGGVGGSLLAY------HIQSFADVVLIDEKEYF--EITWASLRAVVEPSF- 65
              +V+V+G G  G   A       +     DVVL +        +T  S          
Sbjct: 390 SDARVLVVGAGPSGLEAARALGVRGY-----DVVLAEAGRDLGGRVTQESA-----LPGL 439

Query: 66  -----AVRSVINHGDYLSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPK 120
                           L NV+I   + +     + +   G    +++V+ ATG       
Sbjct: 440 SAWGRVKEYREAVLAELPNVEIYRESPM---TGDDIVEFG----FEHVITATGATWRTDG 492

Query: 121 SRTERLSQYE-KDFEKVKSA-----------NSVLIVGGG--PTGVELAGEIAVDFPDKK 166
                 +     +  +V                V++        G  +A  +A      +
Sbjct: 493 VARFHTTALPIAEGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQK--GYE 550

Query: 167 VILVHRGPKLLEFVGSRASQIAL-DWLTSKKVEVILNQSVTLNTISDG--LIETSSG--- 220
           V +V  G ++  +  +      +   L    V  + +    +  +  G   +  +     
Sbjct: 551 VSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTD--HAVVAVGAGGVTVRDTYASIE 608

Query: 221 ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDIT--- 277
             ++ D   M T             L   L  R               +V  IGD     
Sbjct: 609 RELECDAVVMVTA--RLP----REELYLDLVARR--------DAGEIASVRGIGDAWAPG 654

Query: 278 DIPE-IKQGYLA 288
            I   +  G  A
Sbjct: 655 TIAAAVWSGRRA 666

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 43/206 (20%), Positives = 78/206 (37%), Gaps = 31/206 (15%)

Query: 94  EVVTAGGQTFVYDYVVVATGHVESVP-KSRTERLSQYE--------KDFEKVKSANSVLI 144
           +V T+ G  +    V++A G     P +       ++E        K   + +    VLI
Sbjct: 99  KVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYAVKSKAEFQGKR-VLI 157

Query: 145 VGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSK-KVEVILNQ 203
           VGGG + V+ A  +  D   +++ L+HR P   +F    AS   L     + ++EV+   
Sbjct: 158 VGGGDSAVDWALNLL-DTA-RRITLIHRRP---QFRAHEASVKELMKAHEEGRLEVLTPY 212

Query: 204 SVTLNTISDGL-------IETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRL 256
            +      + +        +T     ++ D   +  G       L    L      + ++
Sbjct: 213 ELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWGLALE---KNKI 269

Query: 257 MVDENLR--VRGFKNVFAIGDITDIP 280
            VD  +   + G   V+A GDI   P
Sbjct: 270 KVDTTMATSIPG---VYACGDIVTYP 292

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479

 Score = 53.7 bits (130), Expect = 4e-08
 Identities = 63/335 (18%), Positives = 110/335 (32%), Gaps = 86/335 (25%)

Query: 10  AAGLVEKKKVVVI-GGGVGG----------------SLLAYHIQSFAD----VVLIDEKE 48
           AA      K +++    +GG                S LA  +    +      L  +KE
Sbjct: 30  AASY--GAKTLLVEAKALGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDKE 87

Query: 49  YFEITWASLRAVVEPSFAVRSVIN--HGDYLSN-----VKIVVSTAVSITDT---EVVTA 98
           +    W   +          + ++  +G Y  N     V +V   A         EV   
Sbjct: 88  HLTFNWPEFKQ------KRDAYVHRLNGIYQKNLEKEKVDVVFGWA-RFNKDGNVEVQKR 140

Query: 99  GGQTFVY--DYVVVATGHVESVPKSRTERLSQYEKDFEKVKSAN----------SVLIVG 146
              T VY  ++++VATG     P++           FE    ++           V++VG
Sbjct: 141 DNTTEVYSANHILVATGGKAIFPEN--------IPGFELGTDSDGFFRLEEQPKKVVVVG 192

Query: 147 GGPTGVELAG---EIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQ 203
            G  G+ELAG    +  +       LV RG  +L            D    + + V    
Sbjct: 193 AGYIGIELAGVFHGLGSE-----THLVIRGETVLRKFDECIQNTITDHYVKEGINVHKLS 247

Query: 204 SVT-LNTISDGL---IETSSGETI-DTDCHFMCTG-KAMASSWLRETILKDSLDGRGRLM 257
            +  +    +     I  +  ++I D D      G K+          +K  L+   +++
Sbjct: 248 KIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIK--LNSHDQII 305

Query: 258 VDENLR--VRGFKNVFAIGDITDIPE-----IKQG 285
            DE     V    N++++GD+    E     I  G
Sbjct: 306 ADEYQNTNV---PNIYSLGDVVGKVELTPVAIAAG 337

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 8e-08
 Identities = 54/360 (15%), Positives = 108/360 (30%), Gaps = 100/360 (27%)

Query: 35  IQSFADVVLIDEKEYFEITWASLRAV-VEPSFAVRSVINHGDYLSNVKIVVSTAVSITDT 93
           +Q F + VL     Y +   + ++    +PS   R  I   D L N              
Sbjct: 79  VQKFVEEVL--RINY-KFLMSPIKTEQRQPSMMTRMYIEQRDRLYN-------------- 121

Query: 94  EVVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQYEKDFEKVKSANSVLIVGGGPTG-- 151
                  Q F    V            SR +   +  +   +++ A +VLI G   +G  
Sbjct: 122 -----DNQVFAKYNV------------SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164

Query: 152 VELAGEIAVD------FPDK----KVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVIL 201
             +A ++ +          K     +   +    +LE +     QI  +W  + + +   
Sbjct: 165 W-VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW--TSRSDHSS 221

Query: 202 NQSVTLNTISDG--------------LI--ETSSGETIDT-DCHFMCTGKAMASSWLRET 244
           N  + +++I                 L+     + +  +  +    C  K + ++  R  
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN--LSC--KILLTT--RFK 275

Query: 245 ILKDSLDGRGRLMVDENLRVRGF-----KNVFA--IG-DITDIP-EIKQGY-LA------ 288
            + D L       +  +           K++    +     D+P E+             
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335

Query: 289 -QKHALVTAKNLKKLMMGRNKGTMATYKPGYPIALVSLGRREGVAHFPFLTI---SGRIP 344
             +  L T  N K +   +    +         +L  L   E    F  L++   S  IP
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIE-------SSLNVLEPAEYRKMFDRLSVFPPSAHIP 388

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Length = 323

 Score = 52.1 bits (126), Expect = 9e-08
 Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 31/151 (20%)

Query: 142 VLIVGGGPTGVELAG---EIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSK-KV 197
           V ++GGG + +E A      +      KV L+HR          +A  I ++ +  K  V
Sbjct: 157 VAVIGGGDSALEGAEILSSYS-----TKVYLIHRRDTF------KAQPIYVETVKKKPNV 205

Query: 198 EVILNQSVTLNTISDGLIE------TSSGET--IDTDCHFMCTGKAMASSWLRETILKDS 249
           E +LN SV      D +++        +GE   ++ +  F+  G    + + +   ++  
Sbjct: 206 EFVLN-SVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIE-- 262

Query: 250 LDGRGRLMVDENLR--VRGFKNVFAIGDITD 278
            D  G + VDE +R  V G   VFA GD T 
Sbjct: 263 TDTNGYIKVDEWMRTSVPG---VFAAGDCTS 290

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499

 Score = 52.6 bits (127), Expect = 9e-08
 Identities = 42/223 (18%), Positives = 77/223 (34%), Gaps = 31/223 (13%)

Query: 73  HGDYLSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQYEKD 132
            G+ + +   +    +  T  +           D V+VATG       +    L   + D
Sbjct: 116 RGELIDSTPGLARHRIKATAAD---GSTSEHEADVVLVATG-------ASPRILPSAQPD 165

Query: 133 FEKVKSAN----------SVLIVGGGPTGVELA---GEIAVDFPDKKVILVHRGPKLLEF 179
            E++ +             +++VG G TG E      E+ V      V +V     +L +
Sbjct: 166 GERILTWRQLYDLDALPDHLIVVGSGVTGAEFVDAYTELGV-----PVTVVASQDHVLPY 220

Query: 180 VGSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMA 237
             + A+ +  +    + V +  N      T +    L+  + G T++     M  G    
Sbjct: 221 EDADAALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPN 280

Query: 238 SSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIP 280
           +S L    +   L     L VD   R      ++A GD T + 
Sbjct: 281 TSGLGLERVGIQLGRGNYLTVDRVSRT-LATGIYAAGDCTGLL 322

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 47/207 (22%), Positives = 79/207 (38%), Gaps = 32/207 (15%)

Query: 94  EVVTAGGQTFVYDYVVVATGHVESVPK--SRTERLSQYE--------KDFEKVKSANSVL 143
           E  T  G  +    V++A G     P+   +   +            K  E  K    V+
Sbjct: 109 ETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYAVKSVEDFKGKR-VV 167

Query: 144 IVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSK-KVEVILN 202
           IVGGG + ++    +  +     V LVHRG    EF G   +   ++   +   ++V L 
Sbjct: 168 IVGGGDSALDWTVGLIKN--AASVTLVHRGH---EFQGHGKTAHEVERARANGTIDVYLE 222

Query: 203 QSVTLNTISDGLIE-----TSSGET--IDTDCHFMCTGKAMASSWLRETILKDSLDGRGR 255
             V     S+G++      +S G    ++ D   +  G       L    L+  L     
Sbjct: 223 TEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLE--LY-ENA 279

Query: 256 LMVDENLR--VRGFKNVFAIGDITDIP 280
           L+VD +++  V G   ++A GDI   P
Sbjct: 280 LVVDSHMKTSVDG---LYAAGDIAYYP 303

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478

 Score = 51.7 bits (125), Expect = 2e-07
 Identities = 61/360 (16%), Positives = 105/360 (29%), Gaps = 136/360 (37%)

Query: 10  AAGLVEKKKVVVI-GGGVGG----------------SLLAYHIQSFADVVLIDEKEYFEI 52
           AA L    +  V+    +GG                ++ +  +   AD      +  F  
Sbjct: 39  AAEL--GARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFN- 95

Query: 53  TWASLRAVVEPSFAVRSVIN--HGDYLSN-----VKIVVSTAVSITD--TEVVTAGGQTF 103
            W  ++          + ++  +  Y +N     ++I+   A + T      +   G+ +
Sbjct: 96  -WRVIKE------KRDAYVSRLNAIYQNNLTKSHIEIIRGHA-AFTSDPKPTIEVSGKKY 147

Query: 104 VYDYVVVATG------------------------HVESVPKSRTERLSQYEKDFEKVKSA 139
              ++++ATG                         +E +P                    
Sbjct: 148 TAPHILIATGGMPSTPHESQIPGASLGITSDGFFQLEELPGR------------------ 189

Query: 140 NSVLIVGGGPTGVELAG---EIAVDFPDKKVILVHRGPKLLEFVGSR-----ASQIALDW 191
              +IVG G   VE+AG    +          L+ R  K+L     R      S    + 
Sbjct: 190 --SVIVGAGYIAVEMAGILSALGSK-----TSLMIRHDKVL-----RSFDSMISTNCTEE 237

Query: 192 LTSKKVEVILNQSVT-LNTISDGLI----------ETSSGETIDTDCHFMCTGKAMASSW 240
           L +  VEV+    V  +     GL                   D DC     G       
Sbjct: 238 LENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG------- 290

Query: 241 LRETILKD--------SLDGRGRLMVDENLR--VRGFKNVFAIGDITDIPE-----IKQG 285
            R    KD          D +G ++VDE     V   K ++A+GD+          I  G
Sbjct: 291 -RVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNV---KGIYAVGDVCGKALLTPVAIAAG 346

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 38/307 (12%), Positives = 77/307 (25%), Gaps = 66/307 (21%)

Query: 15  EKKKVVVIGGGVGGSLLAY------HIQSFADVVLIDEKEYF--EITWAS-------LRA 59
            K  V+++G G  GS  A       +      V L D  E     +   +          
Sbjct: 388 NKDSVLIVGAGPSGSEAARVLMESGY-----TVHLTDTAEKIGGHLNQVAALPGLGEWSY 442

Query: 60  VVEPSFAVRSVINHGDYLSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATG---HVE 116
             +  +    +          ++ +         + V   G     D V++ATG   + +
Sbjct: 443 HRD--YRETQITKLLKKNKESQLALGQ--KPMTADDVLQYG----ADKVIIATGARWNTD 494

Query: 117 SVPKSRTERLSQYEKDFEKVKSA-----------NSVLIVGGGP--TGVELAGEIAVDFP 163
                  + +   +       +              V+I+          LA ++A    
Sbjct: 495 GTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATA-- 552

Query: 164 DKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILN---QSVTLNTISDGLIETSSG 220
             +V +V           +      +  L    VE + +     +    +    I     
Sbjct: 553 GHEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGS 612

Query: 221 ETIDTDCHFMCTGKAMASSWLR------------ETILKDSLDGRGRLMVDENLRVRGFK 268
           +               +  W+             E  L + L  R              K
Sbjct: 613 KRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWNELKARES-----EWAENDIK 667

Query: 269 NVFAIGD 275
            ++ IGD
Sbjct: 668 GIYLIGD 674

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 65/345 (18%), Positives = 99/345 (28%), Gaps = 120/345 (34%)

Query: 15  EKKKVVVIGGGVGGSLLAY------HIQSFADVVLIDE----------------KEYFEI 52
           +KK + V+G G  G   A       H      V L D                 KE F  
Sbjct: 372 QKKNLAVVGAGPAGLAFAINAAARGH-----QVTLFDAHSEIGGQFNIAKQIPGKEEFYE 426

Query: 53  TWASLRAVVEPSFAVRSVINHGDYLSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVAT 112
           T    R ++E              ++ V + ++  V     + + A      +D  ++A+
Sbjct: 427 TLRYYRRMIE--------------VTGVTLKLNHTV---TADQLQA------FDETILAS 463

Query: 113 G---HVESVPKSRTERLSQYEKDFE-KVKSANSVLIVGGGPTGVELA------------- 155
           G       +      ++  Y      K    N V I+G G  G + A             
Sbjct: 464 GIVPRTPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQN 523

Query: 156 -----GEIAVDF------------------PDKKVILVHRGPKLLEFVGSRASQIALDWL 192
                 E  +D                   P + V+L  +  K  + +G     I    L
Sbjct: 524 IAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTL 583

Query: 193 TSKKVEVILNQSVTLNTISD-GLIETSSGE--TIDTDCHFMCTGKAMASSWLRETILKDS 249
            S+ V++I    V+   I D GL    +GE   +  D   +C G            L   
Sbjct: 584 LSRGVKMIPG--VSYQKIDDDGLHVVINGETQVLAVDNVVICAG--QEP----NRALAQP 635

Query: 250 LDGRGRLMVDENLRVRGFKNVFAIGD-----ITDIPE-IKQGYLA 288
           L   G             K V  IG        D    I QG   
Sbjct: 636 LIDSG-------------KTVHLIGGCDVAMELDARRAIAQGTRL 667

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455

 Score = 49.0 bits (118), Expect = 1e-06
 Identities = 48/203 (23%), Positives = 85/203 (41%), Gaps = 34/203 (16%)

Query: 96  VTAGGQTFVYDYVVVATGHVESVPKSRTERLSQYEKDFEKVKSA----------NSVLIV 145
           V   G+     Y+++ATG   S P          + D+E+V ++            +++V
Sbjct: 121 VEETGEELEARYILIATG---SAPLI----PPWAQVDYERVVTSTEALSFPEVPKRLIVV 173

Query: 146 GGGPTGVELA------GEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEV 199
           GGG  G+EL       G         +VI++    ++L  +    S+ A      + + +
Sbjct: 174 GGGVIGLELGVVWHRLG--------AEVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTI 225

Query: 200 ILNQSVT-LNTISDGL-IETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLM 257
                VT +   + G  +E   GE ++ D   +  G+   +  L       S D RGR+ 
Sbjct: 226 RTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIP 285

Query: 258 VDENLRVRGFKNVFAIGDITDIP 280
           VDE+LR     +++AIGD+   P
Sbjct: 286 VDEHLRT-RVPHIYAIGDVVRGP 307

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 57/317 (17%), Positives = 114/317 (35%), Gaps = 63/317 (19%)

Query: 14  VEKKKVVVIGGGVGGSLLAYHIQSF-ADVVLIDEKE-----------------------Y 49
           ++  KV +IG G  G  +A  ++ F    V+I EK                         
Sbjct: 2   MQHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHWPKSTRTITPSFTSNG 61

Query: 50  FEIT-WASLRAVVEPSFAVRSVINHGD----YLSNV------KIVVSTAV-SITDTE--- 94
           F +    ++     P+F        G+    YL  V       I  +T V +I+  +   
Sbjct: 62  FGMPDMNAISMDTSPAFTFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYY 121

Query: 95  VVTAGGQTFVYDYVVVATG--HVESVPKSRTERLSQYE--KDFEKVKSANSVLIVGGGPT 150
            +    +T+  DY+ VATG  +    P       S+ E   +F K +     +++GG  +
Sbjct: 122 TIATTTETYHADYIFVATGDYNFPKKPFKYGIHYSEIEDFDNFNKGQ----YVVIGGNES 177

Query: 151 GVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWL--------TSKKVEVILN 202
           G + A ++A +     + L      L +     + +++               ++E+ ++
Sbjct: 178 GFDAAYQLAKN--GSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNVH 235

Query: 203 QSVTLNTISDG--LIETSSGETIDTDCHF-MCTGKAMASSWLRETILKDSLDGRGRLMVD 259
            +V     ++G   I   SG+++ T     + TG     + + + +   +         D
Sbjct: 236 YTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIVQQLFVTTNQDIKLTTHD 295

Query: 260 ENLRVRGFKNVFAIGDI 276
           E+ R      +F IG  
Sbjct: 296 ESTRYPN---IFMIGAT 309

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} Length = 315

 Score = 47.1 bits (113), Expect = 4e-06
 Identities = 35/153 (22%), Positives = 64/153 (41%), Gaps = 31/153 (20%)

Query: 142 VLIVGGGPTGVE----LAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSK-K 196
           V ++GGG T +E    LA  I       K+ L+HR  +       RA+   ++ +    K
Sbjct: 150 VAVLGGGDTALEEALYLAN-IC-----SKIYLIHRRDEF------RAAPSTVEKVKKNEK 197

Query: 197 VEVILNQSVT-----LNTISDGLIETSSGETIDTDCH--FMCTGKAMASSWLRETILKDS 249
           +E+I + SV         ++   ++   G   D +    F   G  + +  L++   K  
Sbjct: 198 IELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFL 257

Query: 250 L--DGRGRLMVDENLR--VRGFKNVFAIGDITD 278
              +  G++ VD  ++  V G   +FA GD+  
Sbjct: 258 CNMEEGGQVSVDLKMQTSVAG---LFAAGDLRK 287

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* Length = 311

 Score = 47.1 bits (113), Expect = 4e-06
 Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 34/155 (21%)

Query: 142 VLIVGGGPTGVE----LAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSK-K 196
           V ++GGG T VE    LA  I      KKV L+HR          R + I L+   +  K
Sbjct: 146 VAVLGGGDTAVEEAIYLAN-IC-----KKVYLIHRRDGF------RCAPITLEHAKNNDK 193

Query: 197 VEVILNQSVTLNTISDG-------LIETSSGETIDTDCH--FMCTGKAMASSWLRETILK 247
           +E +    V      D        +  T++ E  +      F+  G  + ++ L++    
Sbjct: 194 IEFLTP-YVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNS 252

Query: 248 DSL--DGRGRLMVDENLR--VRGFKNVFAIGDITD 278
                D  G ++VD +++  V+G   +FA GDI  
Sbjct: 253 MLCKCDEYGSIVVDFSMKTNVQG---LFAAGDIRI 284

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} Length = 325

 Score = 46.0 bits (110), Expect = 8e-06
 Identities = 32/151 (21%), Positives = 64/151 (42%), Gaps = 32/151 (21%)

Query: 142 VLIVGGGPTGVELA---GEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSK-KV 197
           V+++GGG   VE      + A      +V ++HR   L      RA+++A     +  K+
Sbjct: 155 VVVIGGGDAAVEEGMFLTKFA-----DEVTVIHRRDTL------RANKVAQARAFANPKM 203

Query: 198 EVILNQSVTLNTISDG------LIETSSGETIDTDCH--FMCTGKAMASSWLRETILKDS 249
           + I + +V              L    +GE  +      F+  G    ++++++T+   S
Sbjct: 204 KFIWDTAVE-EIQGADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDTV---S 259

Query: 250 LDGRGRLMVDENLR--VRGFKNVFAIGDITD 278
           L   G + V + +   +     +FA GD++D
Sbjct: 260 LRDDGYVDVRDEIYTNIPM---LFAAGDVSD 287

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467

 Score = 46.4 bits (111), Expect = 8e-06
 Identities = 42/236 (17%), Positives = 92/236 (38%), Gaps = 39/236 (16%)

Query: 81  KIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPK----------SRTERLSQYE 130
           +     ++++   E    G +  ++D  +VATG   +VP           + TE L+   
Sbjct: 118 RFKDDQSLTVRLNE---GGERVVMFDRCLVATGASPAVPPIPGLKESPYWTSTEALA--- 171

Query: 131 KDFEKVKSANSVLIVGGGPTGVELA------GEIAVDFPDKKVILVHRGPKLLEFVGSRA 184
              + +     + ++G     +ELA      G         KV ++ R   L        
Sbjct: 172 --SDTIP--ERLAVIGSSVVALELAQAFARLG--------SKVTVLAR-NTLFFREDPAI 218

Query: 185 SQIALDWLTSKKVEVILNQSVT-LNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRE 243
            +       ++ +EV+ +   + +  +    + T++   +  D   + TG+   +  L  
Sbjct: 219 GEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTTHGELRADKLLVATGRTPNTRSLAL 278

Query: 244 TILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNL 299
                +++ +G +++D+ +R     N++A GD TD P+    Y+A       A N+
Sbjct: 279 DAAGVTVNAQGAIVIDQGMRTS-NPNIYAAGDCTDQPQF--VYVAAAAGTRAAINM 331

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Length = 463

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 14/103 (13%)

Query: 88  VSITDTEVVTAGGQTFVY--DYVVVATGHVESVPK-----SRTERL---SQYEKDFEKVK 137
           V         A G+  V     +VV+ G    +P+         R+   SQY +   K  
Sbjct: 162 VEALRVISRNADGEELVRTTRALVVSPGGTPRIPQVFRALKGDGRVFHHSQYLEHMAKQP 221

Query: 138 SAN----SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL 176
            ++     + I+GGG +  E   ++   +P  +  ++ R   L
Sbjct: 222 CSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASAL 264

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} Length = 335

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 34/151 (22%), Positives = 60/151 (39%), Gaps = 31/151 (20%)

Query: 142 VLIVGGGPTGVELA---GEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSK-KV 197
           + ++GGG + +E A      A     + V LVHR  +       RAS+I LD   +  K+
Sbjct: 158 IAVIGGGDSAMEEATFLTRFA-----RSVTLVHRRDEF------RASKIMLDRARNNDKI 206

Query: 198 EVILNQSVTLNTISDG------LIETSSGETIDTDCH--FMCTGKAMASSWLRETILKDS 249
             + N    +    D       + +T++G          F+  G    S      +++++
Sbjct: 207 RFLTN-HTVVAVDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSG-----LVREA 260

Query: 250 L--DGRGRLMVDENLRVRGFKNVFAIGDITD 278
           +  D  G ++V           VFA GD+ D
Sbjct: 261 IDVDPDGYVLVQGRTTSTSLPGVFAAGDLVD 291

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 45/272 (16%), Positives = 88/272 (32%), Gaps = 46/272 (16%)

Query: 81  KIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQYEK-----DFEK 135
           +I++       + +      +      +++A G+    P      +   E      +F  
Sbjct: 118 RILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPP-----VKGIENTISSDEFFN 172

Query: 136 VKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSK 195
           +K +  + IVG G   VEL   +          +  RG ++L         +  + +   
Sbjct: 173 IKESKKIGIVGSGYIAVELIN-VIKRL-GIDSYIFARGNRILRKFDESVINVLENDMKKN 230

Query: 196 KVEVILNQSVT-LNTISDGL--IETSSGETIDT-DCHFMCTGKAMASSWLRETILKD--- 248
            + ++    V  +  +SD    I  S G   +  D    C G        R    ++   
Sbjct: 231 NINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVG--------RSPDTENLKL 282

Query: 249 -----SLDGRGRLMVDENLR--VRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKK 301
                  +    ++VDEN R  V    N++A+GD   + + K+      + L      + 
Sbjct: 283 EKLNVETN-NNYIVVDENQRTSV---NNIYAVGDCCMVKKSKEI--EDLNLLKLYNEERY 336

Query: 302 LMMGRNKGTMATYKPG-YPIALVSLGRREGVA 332
           L    N      Y     P+A+       G  
Sbjct: 337 LNKKENVTEDIFYNVQLTPVAI-----NAGRL 363

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* Length = 338

 Score = 43.7 bits (104), Expect = 5e-05
 Identities = 35/158 (22%), Positives = 53/158 (33%), Gaps = 44/158 (27%)

Query: 142 VLIVGGGPTGVELA---GEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSK-KV 197
           + ++GGG +  E A    +        KV ++ R   L      RAS I         K+
Sbjct: 176 LAVIGGGDSACEEAQFLTKYG-----SKVFMLVRKDHL------RASTIMQKRAEKNEKI 224

Query: 198 EVILNQSVTLNTISDG-------LIETSSGETIDTDCH--FMCTGKAMASSWLRETILKD 248
           E++ N +V L    DG       +  T   E  D      F   G   A+      I+  
Sbjct: 225 EILYN-TVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATK-----IVAG 278

Query: 249 SLDGRGRLMVDEN--LRVRG------FKNVFAIGDITD 278
            +D       DE   ++             FA GD+ D
Sbjct: 279 QVD------TDEAGYIKTVPGSSLTSVPGFFAAGDVQD 310

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488

 Score = 43.3 bits (103), Expect = 8e-05
 Identities = 40/238 (16%), Positives = 79/238 (33%), Gaps = 62/238 (26%)

Query: 78  SNVKIVVSTAVSITDT---EVVTAGGQTFVY--DYVVVATGHVESVPKSRTERLSQYEKD 132
             VK     A S  D      V  GG+  +   +++V+ATG        R    +Q +  
Sbjct: 117 RKVKYFNIKA-SFVDEHTVRGVDKGGKATLLSAEHIVIATG-------GRPRYPTQVKGA 168

Query: 133 FEKVKSAN----------SVLIVGGGPTGVELAG---EIAVDFPDKKVILVHRGPKLLEF 179
            E   +++            L+VG     +E AG    I +D       ++ R   L  F
Sbjct: 169 LEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLD-----TTVMMRSIPLRGF 223

Query: 180 VGSRASQIALDWLTSKKVEVILNQSVT-LNTISDGLI-------ETSSGETIDTDCHFMC 231
               +S +  + + S   + +     + +  +    +        +   +T   D     
Sbjct: 224 DQQMSSLVT-EHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWA 282

Query: 232 TGKAMASSWLRETILKD--------SLDGRG-RLMVDENLR--VRGFKNVFAIGDITD 278
            G        R    +         S + +  +++VD      V    +++AIGD+ +
Sbjct: 283 IG--------RVPETRTLNLEKAGISTNPKNQKIIVDAQEATSV---PHIYAIGDVAE 329

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* Length = 333

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 34/160 (21%), Positives = 57/160 (35%), Gaps = 46/160 (28%)

Query: 142 VLIVGGGPTGVELA---GEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSK-KV 197
           + ++GGG + +E A    +        KV ++HR          RAS+I      S  K+
Sbjct: 162 LAVIGGGDSAMEEANFLTKYG-----SKVYIIHRRDAF------RASKIMQQRALSNPKI 210

Query: 198 EVILNQSVTLNTISDG---------LIETSSGETIDTDCH--FMCTGKAMASSWLRETIL 246
           +VI N S  +    DG         +    +G+  D      F   G   A+       L
Sbjct: 211 DVIWN-SSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATK-----FL 264

Query: 247 KDSLDGRGRLMVDEN--LRVRG------FKNVFAIGDITD 278
              ++      +D +  +  +          VFA GD+ D
Sbjct: 265 DGGVE------LDSDGYVVTKPGTTQTSVPGVFAAGDVQD 298

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Length = 381

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 18 KVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYFEI--TWASLRAVVEPSFAVRSVI 71
            +VIG G+ G+   Y + +   VV+++ +       T  S  A    ++    V 
Sbjct: 11 DYLVIGAGIAGASTGYWLSAHGRVVVLEREAQPGYHSTGRS-AAHYTVAYGTPQVR 65

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 39/247 (15%), Positives = 71/247 (28%), Gaps = 84/247 (34%)

Query: 78  SNVKIVVSTAVSITDTEVVT----AGGQTFVYDYVVVATG-------------------- 113
             V+ +     S  D+  +     +G +T      V+A G                    
Sbjct: 121 KKVEYINGLG-SFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGAVEYGITSDD 179

Query: 114 --HVESVPKSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAG---EIAVDFPDKKVI 168
              ++  P                       L+VG G  G+E AG    +  +       
Sbjct: 180 LFSLDREPGK--------------------TLVVGAGYIGLECAGFLKGLGYE-----PT 214

Query: 169 LVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVT-LNTISDGLI-------ETSSG 220
           ++ R   L  F    A  +A   +  + +  +       +    DG +       ET   
Sbjct: 215 VMVRSIVLRGFDQQMAELVA-ASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEE 273

Query: 221 ETIDTDCHFMCTGKAMASSWLRETILKD-SLD------GRGRLMVDENLR--VRGFKNVF 271
                D      G        R+ ++ D +L        + ++ VD      V    N++
Sbjct: 274 SEDVYDTVLWAIG--------RKGLVDDLNLPNAGVTVQKDKIPVDSQEATNV---ANIY 322

Query: 272 AIGDITD 278
           A+GDI  
Sbjct: 323 AVGDIIY 329

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Length = 464

 Score = 41.3 bits (98), Expect = 3e-04
 Identities = 43/216 (19%), Positives = 75/216 (34%), Gaps = 41/216 (18%)

Query: 89  SITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQYEKDFEKVKSA--------- 139
            +   + V  GG+ +    +++ATG       S    L  +    E V  +         
Sbjct: 116 RLVGPKEVEVGGERYGAKSLILATG-------SEPLELKGFPFG-EDVWDSTRALKVEEG 167

Query: 140 --NSVLIVGGGPTGVELA------GEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDW 191
               +L++GGG  G+EL       G         +V L+   P++L       + +    
Sbjct: 168 LPKRLLVIGGGAVGLELGQVYRRLG--------AEVTLIEYMPEILPQGDPETAALLRRA 219

Query: 192 LTSKKVEVILNQSVT-LNTISDGL---IETSSG---ETIDTDCHFMCTGKAMASSWLRET 244
           L  + + V             DGL   +E + G   E +  D   +  G+   +  L   
Sbjct: 220 LEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLE 279

Query: 245 ILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIP 280
                +D RG + V+  +       V+AIGD    P
Sbjct: 280 KAGVKVDERGFIRVNARMET-SVPGVYAIGDAARPP 314

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 36/242 (14%), Positives = 72/242 (29%), Gaps = 65/242 (26%)

Query: 78  SNVKIVVSTAVSITDT---EVVTAGGQTFVY--DYVVVATGHVESVPKSRTERLSQYEKD 132
           + V  + +    +      ++     +      + +++ATG     P        +    
Sbjct: 219 NQVTYLNAKG-RLISPHEVQITDKNQKVSTITGNKIILATGERPKYP--------EIPGA 269

Query: 133 FEKVKSAN----------SVLIVGGGPTGVELAG---EIAVDFPDKKVILVHRGPKLLEF 179
            E   +++            L++G     +E AG    +  D     V ++ R   L  F
Sbjct: 270 VEYGITSDDLFSLPYFPGKTLVIGASYVALECAGFLASLGGD-----VTVMVRSILLRGF 324

Query: 180 VGSRASQIALDWLTSKKVEVILNQSVT---------LNTISDGLI------ETSSGETID 224
               A ++  D++ +  V+                       GL+              +
Sbjct: 325 DQQMAEKVG-DYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEE 383

Query: 225 TDCHFMCTGKAMASSWLRETILKD--------SLDGRGRLMVDENLRVRGFKNVFAIGDI 276
            +      G        RE  L           LD  GR++  ++ +     NV+AIGDI
Sbjct: 384 FETVIFAVG--------REPQLSKVLCETVGVKLDKNGRVVCTDDEQT-TVSNVYAIGDI 434

Query: 277 TD 278
             
Sbjct: 435 NA 436

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* Length = 320

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 20/73 (27%)

Query: 142 VLIVGGGPTGVE----LAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQI----ALDWLT 193
           V ++GGG T VE    L+  IA      +V L+HR          RA +I     +D + 
Sbjct: 148 VAVIGGGNTAVEEALYLSN-IA-----SEVHLIHRRDGF------RAEKILIKRLMDKVE 195

Query: 194 SKKVEVILNQSVT 206
           +  + +  N+++ 
Sbjct: 196 NGNIILHTNRTLE 208

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 46/223 (20%), Positives = 88/223 (39%), Gaps = 42/223 (18%)

Query: 81  KIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQYEKDFEKVKSA- 139
           K V  + +S+   E            ++++ATG   S  KS    L     D +K+ S+ 
Sbjct: 119 KFVSPSEISVDTIE---GENTVVKGKHIIIATG---SDVKS----LPGVTIDEKKIVSST 168

Query: 140 ---------NSVLIVGGGPTGVELA------GEIAVDFPDKKVILVHRGPKLLEFVGSRA 184
                      ++++G G  G+E+       G         +V +V    +++  + +  
Sbjct: 169 GALALSEIPKKLVVIGAGYIGLEMGSVWGRIG--------SEVTVVEFASEIVPTMDAEI 220

Query: 185 SQIALDWLTSKKVEVILNQSVT-LNTISDGL---IETSSG---ETIDTDCHFMCTGKAMA 237
            +     L  + ++  L   V  ++T  DG+   +E S+G     I+ D   +  G+   
Sbjct: 221 RKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPF 280

Query: 238 SSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIP 280
           +S L    +    D  GR++V+E         V+AIGD+   P
Sbjct: 281 TSGLNLDKIGVETDKLGRILVNERFST-NVSGVYAIGDVIPGP 322

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 45/216 (20%), Positives = 83/216 (38%), Gaps = 48/216 (22%)

Query: 89  SITDTEVVTAGGQTFVYDYVVVATGHVESVPK------------SRTERLSQYEKDFEKV 136
            + D + V   GQ    +++++ATG   S               S TE L+      + +
Sbjct: 119 KVLDGKQVEVDGQRIQCEHLLLATG---SSSVELPMLPLGGPVISSTEALA-----PKAL 170

Query: 137 KSANSVLIVGGGPTGVELA------GEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALD 190
                +++VGGG  G+EL       G         +V +V    ++L    S  +    +
Sbjct: 171 P--QHLVVVGGGYIGLELGIAYRKLG--------AQVSVVEARERILPTYDSELTAPVAE 220

Query: 191 WLTSKKVEVILNQSVTLNTISDGLIETSSG----ETIDTDCHFMCTG-KAMASSWLRETI 245
            L    + + L  SV      +G +  + G      ++ D   +  G +     +  E +
Sbjct: 221 SLKKLGIALHLGHSVE--GYENGCLLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECL 278

Query: 246 -LKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIP 280
            LK  ++G   + +DE  +     NV+AIGD+   P
Sbjct: 279 DLK--MNGAA-IAIDERCQT-SMHNVWAIGDVAGEP 310

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	368
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	100.0
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	100.0
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	100.0
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	100.0
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	100.0
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	100.0
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	100.0
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	100.0
4dna_A	463	Probable glutathione reductase; structural genomic	100.0
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	100.0
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	100.0
1fec_A	490	Trypanothione reductase; redox-active center, oxid	100.0
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	100.0
1ojt_A	482	Surface protein; redox-active center, glycolysis,	100.0
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	100.0
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	100.0
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	100.0
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	100.0
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	100.0
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	100.0
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	100.0
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	100.0
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	100.0
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	100.0
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	100.0
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	100.0
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	100.0
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	100.0
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	100.0
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	100.0
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	100.0
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	100.0
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	100.0
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	100.0
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	100.0
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	100.0
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	100.0
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	100.0
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	100.0
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	100.0
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	100.0
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	100.0
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	100.0
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	100.0
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	100.0
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	100.0
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	100.0
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	100.0
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	100.0
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	100.0
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	100.0
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	100.0
4fk1_A	304	Putative thioredoxin reductase; structural genomic	100.0
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	100.0
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	100.0
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	100.0
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	100.0
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	100.0
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	100.0
3r9u_A	315	Thioredoxin reductase; structural genomics, center	100.0
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	100.0
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	100.0
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	100.0
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	100.0
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	100.0
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	100.0
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	100.0
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	100.0
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	100.0
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	100.0
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	100.0
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	100.0
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.97
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	99.97
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	99.97
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	99.97
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.97
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.96
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.96
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	99.96
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.96
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	99.96
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.95
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.95
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.93
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.93
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.92
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.9
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	99.87
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.6
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.58
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	99.56
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.39
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.35
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.34
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.21
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.2
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	99.12
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.12
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.11
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.05
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.04
3dme_A	369	Conserved exported protein; structural genomics, P	99.01
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.01
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.0
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.99
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.99
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.95
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.95
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.91
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.9
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.89
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.89
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.89
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.89
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.87
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	98.87
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.83
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.82
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.81
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.8
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.8
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.78
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.76
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.76
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.73
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.72
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.71
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.71
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.71
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.71
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.7
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.66
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.62
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.62
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.61
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.6
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.6
3atr_A	453	Conserved archaeal protein; saturating double bond	98.58
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.58
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.58
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.57
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.56
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.56
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.53
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.52
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.52
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.52
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.51
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.51
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.51
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.51
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.51
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.5
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.49
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.47
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.46
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.44
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.44
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.44
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.44
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.44
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.43
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.4
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.39
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.39
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.39
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.39
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.38
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.37
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.37
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.34
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.33
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.32
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.32
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.28
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.28
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.27
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.26
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.25
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.25
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.23
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.23
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.22
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.22
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.21
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.21
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.2
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.19
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.19
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.19
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.18
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.16
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.16
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.16
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.15
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.15
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.14
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.12
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.12
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.11
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.11
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.1
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.08
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.08
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.07
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	98.07
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.07
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.04
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.03
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.01
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.01
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.0
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	98.0
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	98.0
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	97.98
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.98
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	97.97
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	97.96
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	97.96
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.94
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.94
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.93
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	97.92
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	97.91
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	97.91
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	97.91
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	97.91
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	97.9
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	97.9
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	97.9
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	97.89
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	97.89
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	97.88
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.88
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	97.88
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	97.87
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.87
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.85
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	97.84
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	97.83
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.83
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.83
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.81
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.8
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.8
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	97.8
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.78
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	97.78
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.77
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.77
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.76
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	97.74
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.74
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	97.74
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.73
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	97.72
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.72
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.71
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	97.71
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.68
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.67
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.67
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.66
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	97.66
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	97.65
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.64
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	97.63
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.62
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	97.62
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.61
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.61
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.61
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.61
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	97.61
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.6
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.6
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.59
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	97.59
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.58
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	97.55
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.53
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	97.52
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.51
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	97.51
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.5
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	97.49
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.49
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.49
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	97.48
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	97.48
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	97.44
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.44
4hb9_A	412	Similarities with probable monooxygenase; flavin,	97.44
4dna_A	463	Probable glutathione reductase; structural genomic	97.44
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.41
4g65_A	461	TRK system potassium uptake protein TRKA; structur	97.39
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	97.39
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	97.39
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.38
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.37
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.36
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.35
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.33
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.3
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.27
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.27
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.25
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.22
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	97.21
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	97.11
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.09
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.01
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	96.98
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	96.96
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	96.91
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	96.87
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	96.87
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	96.86
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	96.85
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	96.75
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	96.75
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	96.69
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	96.63
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	96.61
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	96.51
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	96.45
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	96.36
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.36
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	96.28
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.15
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	96.12
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	95.99
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	95.94
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.75
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.73
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	95.53
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	95.48
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	95.45
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.45
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	95.44
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	95.35
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.35
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.31
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	95.16
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	94.95
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	94.91
3c85_A	183	Putative glutathione-regulated potassium-efflux S	94.85
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	94.78
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	94.71
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	94.35
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	94.07
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	94.02
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	94.02
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	93.97
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	93.91
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	93.85
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	93.85
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	93.77
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	93.61
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	93.56
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	93.48
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	93.38
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	93.18
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	93.06
3qha_A	296	Putative oxidoreductase; seattle structural genomi	92.95
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	92.9
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	92.82
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	92.63
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	92.62
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	92.61
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	92.61
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	92.55
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	92.55
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	92.53
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	92.46
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	92.45
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	92.41
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	92.39
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	92.32
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	92.3
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	92.28
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	92.25
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	92.19
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	92.13
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	92.11
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	92.05
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	92.04
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	91.94
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	91.93
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	91.93
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	91.92
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	91.86
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	91.85
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	91.84
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	91.74
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	91.69
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	91.67
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	91.59
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	91.5
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	91.48
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	91.46
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	91.41
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	91.4
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	91.34
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	91.3
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	91.26
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	91.25
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	91.22
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	91.16
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	91.13
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	91.09
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	91.07
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	91.05
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	91.04
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	90.95
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	90.93
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	90.89
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	90.88
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	90.87
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	90.85
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	90.83
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	90.82
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	90.82
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	90.81
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	90.75
3tl2_A	315	Malate dehydrogenase; center for structural genomi	90.72
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	90.64
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	90.64
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	90.6
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	90.58
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	90.58
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	90.49
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	90.46
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	90.42
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	90.4
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	90.4
4ezb_A	317	Uncharacterized conserved protein; structural geno	90.33
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	90.27
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	90.24
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	90.22
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	90.19
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	90.19
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	90.17
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	90.16
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	90.08
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	90.06
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	90.04
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	90.0
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	89.91
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	89.88
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	89.75
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	89.71
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	89.69
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	89.64
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	89.6
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	89.59
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	89.56
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	89.5
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	89.43
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	89.37
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	89.37
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	89.27
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	89.23
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	89.2
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	89.2
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	89.19
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	89.18
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	89.15
4g65_A	461	TRK system potassium uptake protein TRKA; structur	89.12
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	89.1
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	89.06
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	89.05
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	89.0
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	88.99
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	88.96
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	88.91
3dme_A	369	Conserved exported protein; structural genomics, P	88.8
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	88.78
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	88.77
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	88.74
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	88.69
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	88.68
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	88.65
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	88.56
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	88.49
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	88.47
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	88.41
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	88.37
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	88.36
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	88.35
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	88.34
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	88.21
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	88.2
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	88.2

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=100.00  E-value=2.7e-46  Score=353.67  Aligned_cols=337  Identities=19%  Similarity=0.277  Sum_probs=254.0

Q ss_pred             CcEEEECCChHHHHHHHHhhc-C--CcEEEEcCCCceeeeccceeeeeccccccc-c-e-eeccccc--CceeEEE-eEE
Q 017664           17 KKVVVIGGGVGGSLLAYHIQS-F--ADVVLIDEKEYFEITWASLRAVVEPSFAVR-S-V-INHGDYL--SNVKIVV-STA   87 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~~-g--~~v~lie~~~~~~~~~~~~~~~~~~~~~~~-~-~-~~~~~~~--~~~~~~~-~~~   87 (368)
                      ++||||||||||++||.+|++ |  .+|+|||+++...+....+........... . + ....+++  .++++.. .++
T Consensus         1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V   80 (437)
T 4eqs_A            1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYHEV   80 (437)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHHTTSSCCGGGTBCCCHHHHHHHHCCEEEETEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHHcCCccchhhhhhcCHHHHHHhcCCEEEeCCeE
Confidence            479999999999999999974 4  689999999877665444332222111111 0 0 1111111  1566644 467


Q ss_pred             EEeecc--EEEec-----CCeEEEecEEEEecCCCCCCCCchHH------HHHHHHHHHHH--HhcCCeEEEEcCchhHH
Q 017664           88 VSITDT--EVVTA-----GGQTFVYDYVVVATGHVESVPKSRTE------RLSQYEKDFEK--VKSANSVLIVGGGPTGV  152 (368)
Q Consensus        88 ~~~~~~--~v~~~-----~g~~~~~d~lvlAtG~~~~~p~~~~~------~~~~~~~~~~~--~~~~~~v~VvG~g~~~~  152 (368)
                      +.++..  .+...     ++..+.||+||||||++|..|+++..      .+.++......  ...+++++|+|+|++|+
T Consensus        81 ~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~p~i~g~~~~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~ig~  160 (437)
T 4eqs_A           81 IAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSL  160 (437)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEECSEEEECCCEEECCCCCCCTTEECCSSHHHHHHHHHHHHHHTCCEEEEECCSHHHH
T ss_pred             EEEEccCcEEEEEeccCCceEEEEcCEEEECCCCccccccccCceEEeeccHHHHHHHHHhhhccCCcEEEEECCccchh
Confidence            777753  33322     23468999999999999888876532      33444333332  23478999999999999


Q ss_pred             HHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCCcEEecCEEEEcc
Q 017664          153 ELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCT  232 (368)
Q Consensus       153 e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~  232 (368)
                      |+|..+.+  .+.+|+++++.+++++.+++++.+.+.+.++++||++++++.|.+++.+  .+.+.+|+++++|.+++++
T Consensus       161 E~A~~l~~--~g~~Vtlv~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~~~~~--~v~~~~g~~~~~D~vl~a~  236 (437)
T 4eqs_A          161 EVLENLYE--RGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEINAINGN--EITFKSGKVEHYDMIIEGV  236 (437)
T ss_dssp             HHHHHHHH--HTCEEEEEESSSCCSTTSCGGGGHHHHHHHHHTTCCEEESCCEEEEETT--EEEETTSCEEECSEEEECC
T ss_pred             hhHHHHHh--cCCcceeeeeeccccccccchhHHHHHHHhhccceEEEeccEEEEecCC--eeeecCCeEEeeeeEEEEe
Confidence            99999986  4899999999999999999999999999999999999999999877543  7889999999999999999


Q ss_pred             CCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCc--------cchHHHHHHHHHHHHHHHHHHHc
Q 017664          233 GKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPE--------IKQGYLAQKHALVTAKNLKKLMM  304 (368)
Q Consensus       233 G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~--------~~~~~~a~~~g~~aa~~i~~~l~  304 (368)
                      |.+|+.+++...++  .++++|+|.||+++|| +.|||||+|||++.+.        +++++.|.+||+++|+||+    
T Consensus       237 G~~Pn~~~~~~~gl--~~~~~G~I~vd~~~~T-s~p~IyA~GDva~~~~~~~~~~~~~~~a~~A~~~g~~~a~ni~----  309 (437)
T 4eqs_A          237 GTHPNSKFIESSNI--KLDRKGFIPVNDKFET-NVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIA----  309 (437)
T ss_dssp             CEEESCGGGTTSSC--CCCTTSCEECCTTCBC-SSTTEEECGGGEEEEBSSSSSEECCCSHHHHHHHHHHHHHHHH----
T ss_pred             ceecCcHHHHhhhh--hhccCCcEecCCCccC-CCCCEEEEEEccCcccccCCccccchhHHHHHHHHHHHHHHHc----
Confidence            99999998887766  6788999999999998 8999999999987543        2468899999999999998    


Q ss_pred             CCCCCCccccc-------cCCCeEEEeecCCccee------EecC----ccccCccceeeeccccchhHHHHHcCCCCC
Q 017664          305 GRNKGTMATYK-------PGYPIALVSLGRREGVA------HFPF----LTISGRIPGWIKSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       305 g~~~~~~~~~~-------~~~~~~~~~~g~~~~~~------~~~~----~~~~~~~~~~~k~~~~~~~~~~~~lG~~~~  366 (368)
                      |++..+...|.       ..|+++.+|+++++|..      .+.+    ..+.+...+++|+  ++++++++|||+|+.
T Consensus       310 g~~~~~~~~~~~~~~~~~~~p~ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Kl--i~d~~~~~ilGa~~~  386 (437)
T 4eqs_A          310 GNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRV--YYDTSNRQILRAAAV  386 (437)
T ss_dssp             SCTTCCCCCBCCCEEEEETTEEEEEEESCGGGGGGSCEEEEEEEEESSCTTSSSCCEEEEEE--EEETTTCBEEEEEEE
T ss_pred             CCCCcccccceeEEeeeeccceEEEeeCCHHHHHhCCceEEEEecCCchhhcCCCCcEEEEE--EEECCCCEEEEEEEE
Confidence            55432222221       25788999999887742      1111    1245667789999  999999999999863

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=100.00  E-value=1.1e-44  Score=347.31  Aligned_cols=320  Identities=24%  Similarity=0.295  Sum_probs=237.0

Q ss_pred             cCCCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccceeeeeccccc-ccceeecccc----cCceeEEE
Q 017664           11 AGLVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLRAVVEPSFA-VRSVINHGDY----LSNVKIVV   84 (368)
Q Consensus        11 ~~~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~   84 (368)
                      |...++++|||||||+||+++|.+|++ +++|+|||+++++.+.+... ........ .....+...+    ..++++++
T Consensus        37 p~~~~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~~~~PlL~-~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~  115 (502)
T 4g6h_A           37 PQHSDKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLP-SAPVGTVDEKSIIEPIVNFALKKKGNVTYYE  115 (502)
T ss_dssp             CCSCSSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEEECGGGGG-GTTTTSSCGGGGEEEHHHHHTTCSSCEEEEE
T ss_pred             CCCCCCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCcccccchh-HHhhccccHHHhhhhHHHHHHhhcCCeEEEE
Confidence            344557899999999999999999984 89999999999876654221 11111111 1122222221    23688999


Q ss_pred             eEEEEeecc--EEEe--------------------cCCeEEEecEEEEecCCCCCCCCchH--------HHHHHHHHHH-
Q 017664           85 STAVSITDT--EVVT--------------------AGGQTFVYDYVVVATGHVESVPKSRT--------ERLSQYEKDF-  133 (368)
Q Consensus        85 ~~~~~~~~~--~v~~--------------------~~g~~~~~d~lvlAtG~~~~~p~~~~--------~~~~~~~~~~-  133 (368)
                      +++..+|+.  +|.+                    .++.++.||+||||||+.|..|++++        ..+.+..... 
T Consensus       116 ~~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~~ipG~~e~a~~l~t~~dA~~ir~  195 (502)
T 4g6h_A          116 AEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRR  195 (502)
T ss_dssp             EEEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCTTCTTHHHHCEECSSHHHHHHHHH
T ss_pred             EEEEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccCCccCcccccCCCCCHHHHHHHHH
Confidence            999999854  5543                    34678999999999999965554332        1122221111 


Q ss_pred             ------HH----------HhcCCeEEEEcCchhHHHHHHHHhhhC------------CCCeEEEEecCcccccccCchhH
Q 017664          134 ------EK----------VKSANSVLIVGGGPTGVELAGEIAVDF------------PDKKVILVHRGPKLLEFVGSRAS  185 (368)
Q Consensus       134 ------~~----------~~~~~~v~VvG~g~~~~e~a~~l~~~~------------~~~~v~~i~~~~~~l~~~~~~~~  185 (368)
                            +.          .....+++|||+|++|+|+|.+|.+..            ...+|+++++.+++++.+++++.
T Consensus       196 ~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~~~~~~~~  275 (502)
T 4g6h_A          196 TFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLS  275 (502)
T ss_dssp             HHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSSTTSCHHHH
T ss_pred             HHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccccCCCHHHH
Confidence                  11          112358999999999999999887421            13689999999999999999999


Q ss_pred             HHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCc----EEecCEEEEccCCCCCc---hhhhccccccccCCCCcE
Q 017664          186 QIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGE----TIDTDCHFMCTGKAMAS---SWLRETILKDSLDGRGRL  256 (368)
Q Consensus       186 ~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~----~i~~d~vi~a~G~~p~~---~~~~~~~l~~~~~~~g~i  256 (368)
                      +.+.+.|+++||++++++.|++++.+..  ...+.||+    ++++|.+|||+|.+|++   ++...  ++...+.+|+|
T Consensus       276 ~~~~~~L~~~GV~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~~~~~l~~~--~~~~~~~~g~I  353 (502)
T 4g6h_A          276 SYAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFKK--IPEQNSSKRGL  353 (502)
T ss_dssp             HHHHHHHHHTTCEEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCEECCHHHHHHHHH--SGGGTTCCSSE
T ss_pred             HHHHHHHHhcceeeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCCcCCHHHHhHHHh--ccccccCCCce
Confidence            9999999999999999999998875533  34456663    69999999999999874   22222  23356778999


Q ss_pred             EeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHc--------------------CCCCCCcccccc
Q 017664          257 MVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMM--------------------GRNKGTMATYKP  316 (368)
Q Consensus       257 ~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~--------------------g~~~~~~~~~~~  316 (368)
                      .||++||++++|||||+|||+..+.+++++.|.+||+++|+||.+..+                    ++   ++.+|..
T Consensus       354 ~Vd~~lq~~~~~~IfAiGD~a~~~~p~~a~~A~qqg~~~A~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~pF~y  430 (502)
T 4g6h_A          354 AVNDFLQVKGSNNIFAIGDNAFAGLPPTAQVAHQEAEYLAKNFDKMAQIPNFQKNLSSRKDKIDLLFEEN---NFKPFKY  430 (502)
T ss_dssp             EBCTTSBBTTCSSEEECGGGEESSSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHTTSSSCCHHHHHHHT---TCCCCCC
T ss_pred             eECCccccCCCCCEEEEEcccCCCCCCchHHHHHHHHHHHHHHHHHhccchhhhhhhhccchhhhhhcCC---CCCCCEe
Confidence            999999999999999999999988889999999999999999977432                    23   2345555


Q ss_pred             CCCeEEEeecCCcceeEecC
Q 017664          317 GYPIALVSLGRREGVAHFPF  336 (368)
Q Consensus       317 ~~~~~~~~~g~~~~~~~~~~  336 (368)
                      .....++++|...|++++..
T Consensus       431 ~~~G~~a~lG~~~av~~~~~  450 (502)
T 4g6h_A          431 NDLGALAYLGSERAIATIRS  450 (502)
T ss_dssp             CCCEEEEECSTTCEEEEEEE
T ss_pred             cCcceEEEEeCCceEEEccC
Confidence            56778899999999988754

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=100.00  E-value=3.4e-45  Score=351.44  Aligned_cols=345  Identities=21%  Similarity=0.232  Sum_probs=254.3

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHhhc--CCcEEEEc--------CCCceeeeccce---e---------------e----
Q 017664           12 GLVEKKKVVVIGGGVGGSLLAYHIQS--FADVVLID--------EKEYFEITWASL---R---------------A----   59 (368)
Q Consensus        12 ~~~~~~~vvIIGaG~aGl~aA~~L~~--g~~v~lie--------~~~~~~~~~~~~---~---------------~----   59 (368)
                      .|++++||+||||||||+++|.+|++  |++|+|||        +.+.+|+.+...   .               .    
T Consensus         3 ~M~~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~   82 (495)
T 2wpf_A            3 HMSKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGF   82 (495)
T ss_dssp             CCCEEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CcccccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHHhc
Confidence            35557899999999999999999864  99999999        244454432110   0               0    


Q ss_pred             eec---c--cccccceee------------cccc--cC-ceeEEEeEEEEeeccEEEec---C-----CeEEEecEEEEe
Q 017664           60 VVE---P--SFAVRSVIN------------HGDY--LS-NVKIVVSTAVSITDTEVVTA---G-----GQTFVYDYVVVA  111 (368)
Q Consensus        60 ~~~---~--~~~~~~~~~------------~~~~--~~-~~~~~~~~~~~~~~~~v~~~---~-----g~~~~~d~lvlA  111 (368)
                      ...   .  .+....+..            ....  .. +++++.+.+..++++++.+.   +     ++.++||+||||
T Consensus        83 g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~~~~~~~~~~d~lViA  162 (495)
T 2wpf_A           83 GWEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLA  162 (495)
T ss_dssp             TEECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEEC
T ss_pred             CcccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeEEEEeeCCEEEEeecCCccCCCCeEEEcCEEEEe
Confidence            000   0  000000000            0001  12 68889998888988888775   4     678999999999


Q ss_pred             cCCCCCCCCchHH-HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCC-CCeEEEEecCcccccccCchhHHHHH
Q 017664          112 TGHVESVPKSRTE-RLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFP-DKKVILVHRGPKLLEFVGSRASQIAL  189 (368)
Q Consensus       112 tG~~~~~p~~~~~-~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~-~~~v~~i~~~~~~l~~~~~~~~~~~~  189 (368)
                      ||+.|..|++++. .+.+..........+++++|||+|++|+|+|..+.+.++ +.+|+++++.+++++.+++++...+.
T Consensus       163 TGs~p~~p~i~G~~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~  242 (495)
T 2wpf_A          163 TGSWPQMPAIPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGFDETIREEVT  242 (495)
T ss_dssp             CCEEECCCCCTTGGGCEEHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTTSCHHHHHHHH
T ss_pred             CCCCcCCCCCCCccccccHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccccCHHHHHHHH
Confidence            9999777765432 122222222222347899999999999999999986433 88999999999999999999999999


Q ss_pred             HHHHcCCcEEEecceeeecccCC-C--eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecC
Q 017664          190 DWLTSKKVEVILNQSVTLNTISD-G--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRG  266 (368)
Q Consensus       190 ~~l~~~gv~i~~~~~v~~i~~~~-~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~  266 (368)
                      +.++++||++++++.|.+++.++ +  .+.+.+|+++++|.||+|+|++|+.+++....+++.++++|+|.||+++|| +
T Consensus       243 ~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~i~Vd~~~~t-~  321 (495)
T 2wpf_A          243 KQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRT-N  321 (495)
T ss_dssp             HHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEECCGGGTGGGTTCCBCTTSSBCCCTTCBC-S
T ss_pred             HHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCcccccccchhhcCccCCCCCCEEECCCCcc-C
Confidence            99999999999999999998654 2  678889989999999999999999885433334447788899999999998 8


Q ss_pred             CCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCccccc-------cCCCeEEEeecCCcceeE------
Q 017664          267 FKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYK-------PGYPIALVSLGRREGVAH------  333 (368)
Q Consensus       267 ~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~~~~~~~~-------~~~~~~~~~~g~~~~~~~------  333 (368)
                      .|||||+|||++.+  ++++.|.+||+.||+||.    |+.... ..|.       ..++++.+|+++.++...      
T Consensus       322 ~~~IyA~GD~~~~~--~l~~~A~~~g~~aa~~i~----g~~~~~-~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~v  394 (495)
T 2wpf_A          322 VPNIYAIGDITDRL--MLTPVAINEGAALVDTVF----GNKPRK-TDHTRVASAVFSIPPIGTCGLIEEVAAKEFEKVAV  394 (495)
T ss_dssp             STTEEECGGGGCSC--CCHHHHHHHHHHHHHHHH----SSCCCC-CCCSSCEEEECCSSCEEEEECCHHHHHHHSSEEEE
T ss_pred             CCCEEEEeccCCCc--cCHHHHHHHHHHHHHHhc----CCCCCc-CCCCCCCEEEECCCCeEEEeCCHHHHHhcCCCEEE
Confidence            99999999999753  478999999999999997    322111 1111       257889999988766432      


Q ss_pred             --ecCcc----c-cCcccee-eeccccchhHHHHHcCCCCC
Q 017664          334 --FPFLT----I-SGRIPGW-IKSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       334 --~~~~~----~-~~~~~~~-~k~~~~~~~~~~~~lG~~~~  366 (368)
                        +++..    + .+...++ +|+  ++++++++|||+|+.
T Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~kl--v~~~~~~~ilG~~~~  433 (495)
T 2wpf_A          395 YMSSFTPLMHNISGSKYKKFVAKI--VTNHSDGTVLGVHLL  433 (495)
T ss_dssp             EEEEECCTHHHHHSCTTCCEEEEE--EEETTTCBEEEEEEE
T ss_pred             EEEecCchhhhhhcCCCcEEEEEE--EEECCCCEEEEEEEE
Confidence              11211    1 2345688 998  999999999999863

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=100.00  E-value=3.1e-45  Score=348.17  Aligned_cols=340  Identities=20%  Similarity=0.257  Sum_probs=251.1

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccce---e-----------eeec---c---------cc
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASL---R-----------AVVE---P---------SF   65 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~---~-----------~~~~---~---------~~   65 (368)
                      |++++||+|||||+||+++|.+|++ |++|+|||+++ +|+.+...   .           ....   .         .+
T Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~   79 (450)
T 1ges_A            1 MTKHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKF   79 (450)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEE
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCCC-CCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCcc
Confidence            3456899999999999999999984 99999999984 44332100   0           0000   0         00


Q ss_pred             cccceee------------cccc--cCceeEEEeEEEEeeccEEEecCCeEEEecEEEEecCCCCCCCCchHH-HHHHHH
Q 017664           66 AVRSVIN------------HGDY--LSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTE-RLSQYE  130 (368)
Q Consensus        66 ~~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~~-~~~~~~  130 (368)
                      ....+..            ....  ..+++++.+.+..++++++.+ +++.+.||+||+|||+.|..|++++. .+.+..
T Consensus        80 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~~-~g~~~~~d~lviAtGs~p~~p~i~g~~~~~~~~  158 (450)
T 1ges_A           80 NWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEV-NGETITADHILIATGGRPSHPDIPGVEYGIDSD  158 (450)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEE-TTEEEEEEEEEECCCEEECCCCSTTGGGSBCHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEE-CCEEEEeCEEEECCCCCCCCCCCCCccceecHH
Confidence            0000000            0000  126888888888888888877 77889999999999999777765432 222233


Q ss_pred             HHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeeccc
Q 017664          131 KDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTI  210 (368)
Q Consensus       131 ~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~  210 (368)
                      ........+++++|||+|++|+|+|..+.+  .+.+|+++++.+++++.+++++.+.+.+.+++.||++++++.|.+++.
T Consensus       159 ~~~~~~~~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~  236 (450)
T 1ges_A          159 GFFALPALPERVAVVGAGYIGVELGGVING--LGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVK  236 (450)
T ss_dssp             HHHHCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEEEEEE
T ss_pred             HhhhhhhcCCeEEEECCCHHHHHHHHHHHh--cCCEEEEEEeCCchhhhhhHHHHHHHHHHHHHCCCEEEeCCEEEEEEE
Confidence            333323357899999999999999999985  488999999999999889999999999999999999999999999886


Q ss_pred             CC-C--eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHH
Q 017664          211 SD-G--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYL  287 (368)
Q Consensus       211 ~~-~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~  287 (368)
                      ++ +  .+.+.+|+++++|.||+|+|++|+.+++....+++.++++|+|.||+++|| +.|||||+|||++.+  .+++.
T Consensus       237 ~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~--~~~~~  313 (450)
T 1ges_A          237 NTDGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNT-NIEGIYAVGDNTGAV--ELTPV  313 (450)
T ss_dssp             CTTSCEEEEETTSCEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCTTSBC-SSTTEEECSGGGTSC--CCHHH
T ss_pred             eCCcEEEEEECCCcEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECCCCcc-CCCCEEEEeccCCCC--ccHHH
Confidence            54 3  678889989999999999999999875422223346788899999999998 899999999998754  37889


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCC-c-------cccccCCCeEEEeecCCcceeEec---Cc------------cccCccc
Q 017664          288 AQKHALVTAKNLKKLMMGRNKGT-M-------ATYKPGYPIALVSLGRREGVAHFP---FL------------TISGRIP  344 (368)
Q Consensus       288 a~~~g~~aa~~i~~~l~g~~~~~-~-------~~~~~~~~~~~~~~g~~~~~~~~~---~~------------~~~~~~~  344 (368)
                      |.+||+.+|+||..    +.... .       ..| ..|+++.+|+++.++..+..   +.            ...+...
T Consensus       314 A~~~g~~aa~~i~~----~~~~~~~~~~~~p~~~~-~~~~~a~vG~~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  388 (450)
T 1ges_A          314 AVAAGRRLSERLFN----NKPDEHLDYSNIPTVVF-SHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQP  388 (450)
T ss_dssp             HHHHHHHHHHHHHT----TCTTCCCCCSSCCEEEC-CSSCEEEEECCHHHHHHHHCGGGEEEEEEEEECHHHHTSSSCCE
T ss_pred             HHHHHHHHHHHHcC----CCCcccCCCCCCCeEEE-CCCceEEEeCCHHHHHhcCCCCcEEEEEEECchhhHHHhcCCCc
Confidence            99999999999983    22111 0       112 24788999998777654311   10            1245567


Q ss_pred             eeeeccccchhHHHHHcCCCCC
Q 017664          345 GWIKSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       345 ~~~k~~~~~~~~~~~~lG~~~~  366 (368)
                      +++|+  ++++++++|||+|+.
T Consensus       389 ~~~k~--~~~~~~~~ilG~~~~  408 (450)
T 1ges_A          389 CRMKL--VCVGSEEKIVGIHGI  408 (450)
T ss_dssp             EEEEE--EEETTTTEEEEEEEE
T ss_pred             EEEEE--EEECCCCEEEEEEEE
Confidence            89998  999999999999863

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=100.00  E-value=2.1e-44  Score=343.43  Aligned_cols=340  Identities=20%  Similarity=0.221  Sum_probs=249.9

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccce------------------eee----ec---cccc
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASL------------------RAV----VE---PSFA   66 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~------------------~~~----~~---~~~~   66 (368)
                      |++++||+|||||+||+++|.+|+ .|++|+|||+++ +|+.+...                  ...    ..   ....
T Consensus         1 M~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~   79 (463)
T 2r9z_A            1 MTQHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESKA-LGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTLD   79 (463)
T ss_dssp             -CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---CC
T ss_pred             CCccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCCC-CCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCcC
Confidence            345789999999999999999997 599999999984 44332110                  000    00   0000


Q ss_pred             ccceee------------cccc--cCceeEEEeEEEEeeccEEEecCCeEEEecEEEEecCCCCCCCCchHH-HHHHHHH
Q 017664           67 VRSVIN------------HGDY--LSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTE-RLSQYEK  131 (368)
Q Consensus        67 ~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~~-~~~~~~~  131 (368)
                      ...+..            ....  ..+++++.+.+..++.+++.+ ++..+.||+||+|||+.|..|++++. .+.+...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~-~g~~~~~d~lviAtGs~p~~p~i~G~~~~~~~~~  158 (463)
T 2r9z_A           80 WPRLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDAHTIEV-EGQRLSADHIVIATGGRPIVPRLPGAELGITSDG  158 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEE-TTEEEEEEEEEECCCEEECCCSCTTGGGSBCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeEEEEccCCEEEE-CCEEEEcCEEEECCCCCCCCCCCCCccceecHHH
Confidence            000000            0000  126888888888888888877 77889999999999999777665432 1222333


Q ss_pred             HHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccC
Q 017664          132 DFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTIS  211 (368)
Q Consensus       132 ~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~  211 (368)
                      .......+++++|||+|++|+|+|..|.+  .+.+|+++++.+++++.+++++.+.+.+.+++.||++++++.|.+++.+
T Consensus       159 ~~~~~~~~~~vvVvGgG~~g~e~A~~l~~--~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~  236 (463)
T 2r9z_A          159 FFALQQQPKRVAIIGAGYIGIELAGLLRS--FGSEVTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLEFAVAALERD  236 (463)
T ss_dssp             HHHCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEESSCCEEEEEEE
T ss_pred             HhhhhccCCEEEEECCCHHHHHHHHHHHh--cCCEEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEe
Confidence            33323347899999999999999999985  4889999999999988889999999999999999999999999998765


Q ss_pred             CC--eEEcCCCc-EEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHH
Q 017664          212 DG--LIETSSGE-TIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLA  288 (368)
Q Consensus       212 ~~--~v~~~~g~-~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a  288 (368)
                      ++  .+.+.+|+ ++++|.+|+|+|++|+.+++....+++.++++|+|.||+++|| +.|||||+|||++.+  .+++.|
T Consensus       237 ~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t-~~~~Iya~GD~~~~~--~~~~~A  313 (463)
T 2r9z_A          237 AQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNT-NVPGVYALGDITGRD--QLTPVA  313 (463)
T ss_dssp             TTEEEEEETTCCEEEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCTTSBC-SSTTEEECGGGGTSC--CCHHHH
T ss_pred             CCeEEEEEeCCcEEEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECCCCcc-CCCCEEEEeecCCCc--ccHHHH
Confidence            43  67888998 8999999999999999875422223346788899999999998 899999999998754  378899


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCccccc-------cCCCeEEEeecCCcceeEe---------cCc-----cccCccceee
Q 017664          289 QKHALVTAKNLKKLMMGRNKGTMATYK-------PGYPIALVSLGRREGVAHF---------PFL-----TISGRIPGWI  347 (368)
Q Consensus       289 ~~~g~~aa~~i~~~l~g~~~~~~~~~~-------~~~~~~~~~~g~~~~~~~~---------~~~-----~~~~~~~~~~  347 (368)
                      .+||+.+|.||.    |+.......|.       ..++++.+|+++.++..++         ++.     ...+...+++
T Consensus       314 ~~~g~~aa~~i~----g~~~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (463)
T 2r9z_A          314 IAAGRRLAERLF----DGQSERKLDYDNIPTVVFAHPPLSKVGLSEPEARERLGDVLTVYETSFTPMRYALNEHGPKTAM  389 (463)
T ss_dssp             HHHHHHHHHHHH----SCCTTCCCCCSSCCEEECCSSCEEEEECCHHHHHHHHCSCEEEEEEEECCGGGTTSSSCCCEEE
T ss_pred             HHHHHHHHHHHc----CCCCcccCCCCCCCEEEeCCCCeEEEcCCHHHHHhcCCCCEEEEEEEcccchhhhhcCCCcEEE
Confidence            999999999997    33211101111       2467888998876654321         111     1244557899


Q ss_pred             eccccchhHHHHHcCCCC
Q 017664          348 KSRDLFVGKTRKQLGLKP  365 (368)
Q Consensus       348 k~~~~~~~~~~~~lG~~~  365 (368)
                      |+  ++++++++|||+|+
T Consensus       390 kl--v~~~~~~~ilG~~~  405 (463)
T 2r9z_A          390 KL--VCAGPEQRVVGVHV  405 (463)
T ss_dssp             EE--EEETTTTEEEEEEE
T ss_pred             EE--EEECCCCEEEEEEE
Confidence            98  99999999999986

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=100.00  E-value=9.2e-45  Score=348.82  Aligned_cols=343  Identities=22%  Similarity=0.291  Sum_probs=250.2

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceee-------------------eec-------cc
Q 017664           12 GLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRA-------------------VVE-------PS   64 (368)
Q Consensus        12 ~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~-------------------~~~-------~~   64 (368)
                      ++++++||+||||||||++||..|+ .|++|+|||+++.+|+.|.....                   ...       ..
T Consensus        21 ~~m~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~  100 (491)
T 3urh_A           21 QSMMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPK  100 (491)
T ss_dssp             -----CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCCE
T ss_pred             hhcccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCCc
Confidence            3445689999999999999999998 59999999998877654321100                   000       00


Q ss_pred             ccccceeec------------ccc--cCceeEEEeEEEEeeccE--EEecCC--eEEEecEEEEecCCCC-CCCCch---
Q 017664           65 FAVRSVINH------------GDY--LSNVKIVVSTAVSITDTE--VVTAGG--QTFVYDYVVVATGHVE-SVPKSR---  122 (368)
Q Consensus        65 ~~~~~~~~~------------~~~--~~~~~~~~~~~~~~~~~~--v~~~~g--~~~~~d~lvlAtG~~~-~~p~~~---  122 (368)
                      +....+...            ..+  ..+++++.+.+..++++.  +.+.+|  ..+.||+||||||+.| .+|+..   
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~ipg~~~~~  180 (491)
T 3urh_A          101 LNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVAGIPGVEVAF  180 (491)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECSSSEEEEECTTSCEEEEECSEEEECCCEECCCBTTBCCCC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEccCCCCCCCCCccccc
Confidence            000000000            000  126788888888888774  444455  5799999999999985 345442   


Q ss_pred             -HHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEe
Q 017664          123 -TERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVIL  201 (368)
Q Consensus       123 -~~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~  201 (368)
                       ...+.+..........+++++|||+|++|+|+|..+.+  .+.+|+++++.+++++.+++++.+.+.+.+++.||++++
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~v~~  258 (491)
T 3urh_A          181 DEKTIVSSTGALALEKVPASMIVVGGGVIGLELGSVWAR--LGAKVTVVEFLDTILGGMDGEVAKQLQRMLTKQGIDFKL  258 (491)
T ss_dssp             CSSSEECHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHH--HTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEEC
T ss_pred             CCeeEEehhHhhhhhhcCCeEEEECCCHHHHHHHHHHHH--cCCEEEEEeccccccccCCHHHHHHHHHHHHhCCCEEEE
Confidence             22233333333333458999999999999999999986  488999999999999999999999999999999999999


Q ss_pred             cceeeecccCCC--eEEcCC---C--cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEec
Q 017664          202 NQSVTLNTISDG--LIETSS---G--ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIG  274 (368)
Q Consensus       202 ~~~v~~i~~~~~--~v~~~~---g--~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~G  274 (368)
                      ++.+.+++.+++  .+.+.+   |  +++++|.||+|+|++|+.+++.....++.++++|++.||+++|| +.|+|||+|
T Consensus       259 ~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyA~G  337 (491)
T 3urh_A          259 GAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQT-SIAGVYAIG  337 (491)
T ss_dssp             SEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCTTCBC-SSTTEEECG
T ss_pred             CCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECCCCCC-CCCCEEEEE
Confidence            999999887655  344432   4  68999999999999999987433334447788999999999998 899999999


Q ss_pred             ccCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCC------ccccccCCCeEEEeecCCccee--------EecCc---
Q 017664          275 DITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGT------MATYKPGYPIALVSLGRREGVA--------HFPFL---  337 (368)
Q Consensus       275 D~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~~~------~~~~~~~~~~~~~~~g~~~~~~--------~~~~~---  337 (368)
                      ||++.|  ++++.|..||+.+|+||+    |+....      ...| ..|+++.+|+.+.++..        .+++.   
T Consensus       338 D~~~~~--~~~~~A~~~g~~aa~~i~----g~~~~~~~~~~p~~~~-~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~  410 (491)
T 3urh_A          338 DVVRGP--MLAHKAEDEGVAVAEIIA----GQAGHVNYDVIPGVVY-TQPEVASVGKTEEELKAAGVAYKIGKFPFTANG  410 (491)
T ss_dssp             GGSSSC--CCHHHHHHHHHHHHHHHT----TSCCCCCTTCCCEEEC-SSSCEEEEECCHHHHHHTTCCEEEEEEEGGGCH
T ss_pred             ecCCCc--cchhHHHHHHHHHHHHHc----CCCcccCCCCCCEEEE-ccCCeEEEeCCHHHHHhCCCCEEEEEEecCcch
Confidence            999765  488999999999999998    332110      0112 25789999998876642        22221   


Q ss_pred             --cccCccceeeeccccchhHHHHHcCCCCC
Q 017664          338 --TISGRIPGWIKSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       338 --~~~~~~~~~~k~~~~~~~~~~~~lG~~~~  366 (368)
                        .+.+...+++|+  ++++++++|||+|+.
T Consensus       411 ~~~~~~~~~g~~k~--i~~~~~~~ilG~~~~  439 (491)
T 3urh_A          411 RARAMLQTDGFVKI--LADKETDRVLGGHII  439 (491)
T ss_dssp             HHHHTTCCCCEEEE--EEETTTCBEEEEEEE
T ss_pred             hhhcCCCCcEEEEE--EEECCCCEEEEEEEE
Confidence              134566799999  999999999999863

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=100.00  E-value=1.3e-44  Score=347.36  Aligned_cols=341  Identities=17%  Similarity=0.159  Sum_probs=254.8

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccc------------------eeeeec-------ccccccc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWAS------------------LRAVVE-------PSFAVRS   69 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~------------------~~~~~~-------~~~~~~~   69 (368)
                      ++||+||||||||++||.+|++ |++|+|||+++ +|+.+..                  ......       .......
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~-~GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   86 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA-YGTTCARVGCMPSKLLIAAADASYHASQTDLFGIQVDRISVNGKA   86 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC-SSCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEECSEEEECHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC-CCCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCCCCCccCHHH
Confidence            5899999999999999999985 99999999986 4432100                  000000       0000000


Q ss_pred             eeec---------------ccccCceeEEEeEEEEeeccEEEecCCeEEEecEEEEecCCCCCCCCchH---HHHHHHHH
Q 017664           70 VINH---------------GDYLSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRT---ERLSQYEK  131 (368)
Q Consensus        70 ~~~~---------------~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~---~~~~~~~~  131 (368)
                      +..+               ......++++.+.+...+.+++.+.++..+.||+||||||++|..|++..   ..+.+...
T Consensus        87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~~~~~v~~~~~~~~~~d~lViATGs~p~~p~~~~~~~~~v~t~~~  166 (492)
T 3ic9_A           87 VMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLDEHTLQVDDHSQVIAKRIVIATGSRPNYPEFLAAAGSRLLTNDN  166 (492)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEEETTEEEETTTEEEEEEEEEECCCEECCCCHHHHTTGGGEECHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEecCCEEEEcCCcEEEeCEEEEccCCCCcCCCCCCccCCcEEcHHH
Confidence            0000               00112446778888888889999888899999999999999999887432   22333333


Q ss_pred             HHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccC
Q 017664          132 DFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTIS  211 (368)
Q Consensus       132 ~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~  211 (368)
                      .......+++++|||+|++|+|+|..+.+  .+.+|+++++.+++++.+++++.+.+.+.+++. |++++++.+.+++.+
T Consensus       167 ~~~~~~~~k~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~-V~i~~~~~v~~i~~~  243 (492)
T 3ic9_A          167 LFELNDLPKSVAVFGPGVIGLELGQALSR--LGVIVKVFGRSGSVANLQDEEMKRYAEKTFNEE-FYFDAKARVISTIEK  243 (492)
T ss_dssp             HTTCSSCCSEEEEESSCHHHHHHHHHHHH--TTCEEEEECCTTCCTTCCCHHHHHHHHHHHHTT-SEEETTCEEEEEEEC
T ss_pred             HhhhhhcCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEECCcccccCCHHHHHHHHHHHhhC-cEEEECCEEEEEEEc
Confidence            33333457999999999999999999985  588999999999999999999999999999998 999999999999876


Q ss_pred             CC--eEEcC--CC--cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeC-CCeeecCCCCeEEecccCCCCccch
Q 017664          212 DG--LIETS--SG--ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVD-ENLRVRGFKNVFAIGDITDIPEIKQ  284 (368)
Q Consensus       212 ~~--~v~~~--~g--~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd-~~~~~~~~~~ifa~GD~~~~~~~~~  284 (368)
                      ++  .+.+.  +|  +++++|.||+|+|++|+.+++....+++.++++|++.|| +++|| +.|+|||+|||++.+.  +
T Consensus       244 ~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~~t-~~~~IyA~GD~~~~~~--~  320 (492)
T 3ic9_A          244 EDAVEVIYFDKSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQT-SVDHIFVAGDANNTLT--L  320 (492)
T ss_dssp             SSSEEEEEECTTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTCBC-SSTTEEECGGGGTSSC--S
T ss_pred             CCEEEEEEEeCCCceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECcccccC-CCCCEEEEEecCCCCc--c
Confidence            55  45443  67  689999999999999999885444445578889999999 89999 8999999999998654  7


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCC--C--CCccccccCCCeEEEeecCCcceeEe------cC-------c-----cccCc
Q 017664          285 GYLAQKHALVTAKNLKKLMMGRN--K--GTMATYKPGYPIALVSLGRREGVAHF------PF-------L-----TISGR  342 (368)
Q Consensus       285 ~~~a~~~g~~aa~~i~~~l~g~~--~--~~~~~~~~~~~~~~~~~g~~~~~~~~------~~-------~-----~~~~~  342 (368)
                      ++.|.+||+.||+||........  .  .+...| ..|+++.+|+++++|...+      .+       .     .+.+.
T Consensus       321 ~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~~-~~p~~a~vGlte~~a~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~  399 (492)
T 3ic9_A          321 LHEAADDGKVAGTNAGAYPVIAQGQRRAPLSVVF-TEPQVASVGLSLRQIEDLYADQDAANYVVGQVSFEGQGRSRVMGK  399 (492)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCEECCCCCEEEEC-SSSEEEEEESCHHHHHHHCSCSSSCCEEEEEEEGGGCHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHcCCCCCcccCCCCCcEEEE-CCCCeEEecCCHHHHHhccCccCCccEEEEEEEeccchhhhhcCC
Confidence            88999999999999986321111  0  011122 2578999999988766442      11       1     13456


Q ss_pred             cceeeeccccchhHHHHHcCCCCC
Q 017664          343 IPGWIKSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       343 ~~~~~k~~~~~~~~~~~~lG~~~~  366 (368)
                      ..+++|+  ++++++++|||+|+.
T Consensus       400 ~~g~~kl--i~~~~~~~ilG~~~~  421 (492)
T 3ic9_A          400 NKGLLNV--YADRTSGEFLGAEMF  421 (492)
T ss_dssp             CCCEEEE--EEETTTCBEEEEEEE
T ss_pred             CcEEEEE--EEECCCCEEEEEEEE
Confidence            6799999  999999999999863

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=100.00  E-value=8.2e-44  Score=338.74  Aligned_cols=336  Identities=20%  Similarity=0.216  Sum_probs=244.3

Q ss_pred             CcEEEECCChHHHHHHHHhhc---CCcEEEEcCCCceeeeccceeeeeccccc--ccceeeccccc--CceeEE-EeEEE
Q 017664           17 KKVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYFEITWASLRAVVEPSFA--VRSVINHGDYL--SNVKIV-VSTAV   88 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~-~~~~~   88 (368)
                      +||+|||||+||++||.+|++   +.+|+|||+++.+++....+.........  ........+++  .++++. ..++.
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~   82 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVV   82 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            699999999999999999973   89999999999888655444333222111  11111111111  255553 45677


Q ss_pred             Eeecc--EEEe---cCCeEEEecEEEEecCCCCCCCCchHH---H------HHHHHHHHHHHhcCCeEEEEcCchhHHHH
Q 017664           89 SITDT--EVVT---AGGQTFVYDYVVVATGHVESVPKSRTE---R------LSQYEKDFEKVKSANSVLIVGGGPTGVEL  154 (368)
Q Consensus        89 ~~~~~--~v~~---~~g~~~~~d~lvlAtG~~~~~p~~~~~---~------~~~~~~~~~~~~~~~~v~VvG~g~~~~e~  154 (368)
                      .++..  .+..   .++..+.||++|+|||+.|..|+++..   .      +.+.....+....+++++|||+|++|+|+
T Consensus        83 ~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~  162 (452)
T 3oc4_A           83 AMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIRGSQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEA  162 (452)
T ss_dssp             EEETTTTEEEEEETTEEEEEECSEEEECCCCCBCCCCCBTTTCTTEEEGGGCC----CCHHHHTCSEEEEECCSHHHHHH
T ss_pred             EEECCCCEEEEEecCceEEEEcCEEEECCCcccCCCCCCCCCCCCEEEeCCHHHHHHHHHHHhcCCEEEEECCCHHHHHH
Confidence            77643  4443   256689999999999999776654321   1      12223333345568999999999999999


Q ss_pred             HHHHhhhCCCCeEEEEecCcccccc-cCchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEc
Q 017664          155 AGEIAVDFPDKKVILVHRGPKLLEF-VGSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMC  231 (368)
Q Consensus       155 a~~l~~~~~~~~v~~i~~~~~~l~~-~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a  231 (368)
                      |..+.+  .+.+|+++++.+++++. +++++.+.+.+.+++.||++++++.|++++..++  .+.++++ ++++|.||+|
T Consensus       163 A~~l~~--~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A  239 (452)
T 3oc4_A          163 IDFLVK--MKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFA  239 (452)
T ss_dssp             HHHHHH--TTCEEEEEESSSSSSTTTCCHHHHHHHHHHHHTTTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEEC
T ss_pred             HHHHHh--CCCeEEEEEccCccccccCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEEC
Confidence            999985  58999999999999885 8999999999999999999999999999985544  4777777 8999999999


Q ss_pred             cCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCc--------cchHHHHHHHHHHHHHHHHHHH
Q 017664          232 TGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPE--------IKQGYLAQKHALVTAKNLKKLM  303 (368)
Q Consensus       232 ~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~--------~~~~~~a~~~g~~aa~~i~~~l  303 (368)
                      +|++|+.+++...   +.++++|++.||+++|| +.|||||+|||++.+.        +++++.|.+||+.||+||.   
T Consensus       240 ~G~~p~~~~l~~~---~~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~---  312 (452)
T 3oc4_A          240 LNLHPQLAYLDKK---IQRNLDQTIAVDAYLQT-SVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRTGLVVANNLE---  312 (452)
T ss_dssp             SCCBCCCSSCCTT---SCBCTTSCBCCCTTCBC-SSTTEEECGGGBCEEEGGGTEEECCCCHHHHHHHHHHHTTSSS---
T ss_pred             cCCCCChHHHHhh---hccCCCCCEEECcCccC-CCCCEEEEEeeEEeccccCCceeecchHHHHHHHHHHHHHHhc---
Confidence            9999999877543   36788999999999999 8999999999998642        2478899999999999997   


Q ss_pred             cCCCCCCc--cccc----cCCCeEEEeecCCcceeE--------ecCc--cccCccceeeeccccchhHHHHHcCCCC
Q 017664          304 MGRNKGTM--ATYK----PGYPIALVSLGRREGVAH--------FPFL--TISGRIPGWIKSRDLFVGKTRKQLGLKP  365 (368)
Q Consensus       304 ~g~~~~~~--~~~~----~~~~~~~~~~g~~~~~~~--------~~~~--~~~~~~~~~~k~~~~~~~~~~~~lG~~~  365 (368)
                       |......  ....    ..++++.+|+++.+|...        +.+.  .+.+...+++|+  ++++++++|||+|+
T Consensus       313 -g~~~~~~~~~~~~~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~kl--i~~~~~~~ilG~~~  387 (452)
T 3oc4_A          313 -EKTHRFIGSLRTMGTKVGDYYLASTGLTETEGLFFPQTLASIIVRQPAPPLQHGTEILGKL--IYDKVTQRVLGAQL  387 (452)
T ss_dssp             -SCCCCCCCCCCCEEEEETTEEEEEEECCSGGGGGSSSCEEEEEEEEECTTTTCSCEEEEEE--EEETTTCBEEEEEE
T ss_pred             -CCCccCCCccccEEEEEcCeeEEEecCCHHHHHHCCCceEEEEEecCCccCCCCCeEEEEE--EEECCCCEEEEEEE
Confidence             3321110  1111    135788888888776421        1111  134556789999  99999999999986

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=100.00  E-value=3.8e-44  Score=342.10  Aligned_cols=338  Identities=20%  Similarity=0.201  Sum_probs=254.2

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccce------------------eee-------eccccccc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASL------------------RAV-------VEPSFAVR   68 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~------------------~~~-------~~~~~~~~   68 (368)
                      .++||+||||||+|+++|..|++ |++|+|||++ .+|+.+...                  ...       ....+...
T Consensus         4 ~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk~-~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~   82 (463)
T 4dna_A            4 FDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEEF-RYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFDWA   82 (463)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEECHH
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeCC-CCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCcCHH
Confidence            36899999999999999999984 9999999994 444322100                  000       00000000


Q ss_pred             cee--------e----ccccc--CceeEEEeEEEEeeccEEEe-cCCeEEEecEEEEecCCCCC-CCCchHHH-HHHHHH
Q 017664           69 SVI--------N----HGDYL--SNVKIVVSTAVSITDTEVVT-AGGQTFVYDYVVVATGHVES-VPKSRTER-LSQYEK  131 (368)
Q Consensus        69 ~~~--------~----~~~~~--~~~~~~~~~~~~~~~~~v~~-~~g~~~~~d~lvlAtG~~~~-~p~~~~~~-~~~~~~  131 (368)
                      .+.        .    ...++  .+++++...+..++++.+.+ .++..+.||++|+|||+.|. .|++++.. +.+...
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~~~~~~~~~~d~lviAtG~~p~~~p~i~G~~~~~~~~~  162 (463)
T 4dna_A           83 KLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHELCITSNE  162 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETTTTEEEEEEEEEECCCEEECCCTTSTTGGGCBCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEecCCeEEEeCEEEEecCCCcccCCCCCCccccccHHH
Confidence            000        0    00111  26788888888888888887 57889999999999999988 77665322 222222


Q ss_pred             HHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccC
Q 017664          132 DFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTIS  211 (368)
Q Consensus       132 ~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~  211 (368)
                      .......+++++|+|+|++|+|+|..+.+  .+.+|+++++.+++++.+++++.+.+.+.+++.||++++++.|.+++.+
T Consensus       163 ~~~~~~~~~~v~ViGgG~~g~e~A~~l~~--~g~~Vt~v~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~  240 (463)
T 4dna_A          163 AFDLPALPESILIAGGGYIAVEFANIFHG--LGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILCEDIIQSVSAD  240 (463)
T ss_dssp             HTTCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEEC
T ss_pred             HhhhhcCCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEECCCEEEEEEEc
Confidence            22222347899999999999999999985  5889999999999999999999999999999999999999999999876


Q ss_pred             CC---eEE-cCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHH
Q 017664          212 DG---LIE-TSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYL  287 (368)
Q Consensus       212 ~~---~v~-~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~  287 (368)
                      ++   .+. +.+|+ +++|.||+|+|++|+.+++....+++.++++|++.||+++|| +.|||||+|||++.+  ++++.
T Consensus       241 ~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~iya~GD~~~~~--~~~~~  316 (463)
T 4dna_A          241 ADGRRVATTMKHGE-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRT-STPGIYALGDVTDRV--QLTPV  316 (463)
T ss_dssp             TTSCEEEEESSSCE-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCTTCBC-SSTTEEECSGGGSSC--CCHHH
T ss_pred             CCCEEEEEEcCCCe-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECcCCCC-CCCCEEEEEecCCCC--CChHH
Confidence            43   577 88997 999999999999999887543344457788999999999997 899999999999854  47899


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCCc-------cccccCCCeEEEeecCCcceeE--------ecCc-----cccCccceee
Q 017664          288 AQKHALVTAKNLKKLMMGRNKGTM-------ATYKPGYPIALVSLGRREGVAH--------FPFL-----TISGRIPGWI  347 (368)
Q Consensus       288 a~~~g~~aa~~i~~~l~g~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~--------~~~~-----~~~~~~~~~~  347 (368)
                      |.+||+.+|+||+    |......       ..| ..|+++.+|+++++|...        +++.     ...+...+++
T Consensus       317 A~~~g~~aa~~i~----g~~~~~~~~~~~p~~~~-~~p~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (463)
T 4dna_A          317 AIHEAMCFIETEY----KNNPTSPDHDLIATAVF-SQPEIGTVGITEEEAARKFQEIEVYRAEFRPMKATLSGRKEKTIM  391 (463)
T ss_dssp             HHHHHHHHHHHHH----SSCCCCCCCSCCCEEEC-SSSCEEEEECCHHHHHHHSSEEEEEEEEECCTTHHHHCCCCCEEE
T ss_pred             HHHHHHHHHHHHc----CCCCcccCCCCCCEEEE-CCCCeEEecCCHHHHHHcCCCeEEEEEeccccchhhcCCCceEEE
Confidence            9999999999998    3321110       112 247899999988876432        2221     1356678999


Q ss_pred             eccccchhHHHHHcCCCCC
Q 017664          348 KSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       348 k~~~~~~~~~~~~lG~~~~  366 (368)
                      |+  ++++++++|||+|+.
T Consensus       392 k~--~~~~~~~~ilG~~~~  408 (463)
T 4dna_A          392 KL--VVNAADRKVVGAHIL  408 (463)
T ss_dssp             EE--EEETTTCBEEEEEEE
T ss_pred             EE--EEECCCCEEEEEEEE
Confidence            99  999999999999863

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-44  Score=342.21  Aligned_cols=343  Identities=18%  Similarity=0.197  Sum_probs=249.1

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccce---e-----------eee--------c-------
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASL---R-----------AVV--------E-------   62 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~---~-----------~~~--------~-------   62 (368)
                      +++++||+||||||||+++|.+|+ .|.+|+|||+++ +|+.+...   .           ...        .       
T Consensus         8 ~~~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~   86 (479)
T 2hqm_A            8 NTKHYDYLVIGGGSGGVASARRAASYGAKTLLVEAKA-LGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDK   86 (479)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSG
T ss_pred             ccccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCC-cCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCccccccccc
Confidence            345789999999999999999997 599999999985 44332100   0           000        0       


Q ss_pred             --ccccccceee------------cccc--cCceeEEEeEEEEeeccE--EEecCCe--EEEecEEEEecCCCCCCC-Cc
Q 017664           63 --PSFAVRSVIN------------HGDY--LSNVKIVVSTAVSITDTE--VVTAGGQ--TFVYDYVVVATGHVESVP-KS  121 (368)
Q Consensus        63 --~~~~~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~~--v~~~~g~--~~~~d~lvlAtG~~~~~p-~~  121 (368)
                        ..+....+..            ....  ..+++++...+..++++.  +.+.+++  .+.||+||+|||+.|..| ++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~~i  166 (479)
T 2hqm_A           87 EHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPENI  166 (479)
T ss_dssp             GGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECTTSCEEEEESSSCCEEEEEEEEEECCCEEECCCTTS
T ss_pred             ccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCCCCC
Confidence              0000000000            0001  136888888888887764  4445665  799999999999997777 55


Q ss_pred             hHH-HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEE
Q 017664          122 RTE-RLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVI  200 (368)
Q Consensus       122 ~~~-~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~  200 (368)
                      +.. ...+..........+++++|||+|++|+|+|..+.+  .+.+|+++++.+++++.+++++.+.+.+.+++.||+++
T Consensus       167 ~g~~~~~~~~~~~~l~~~~~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~Gv~i~  244 (479)
T 2hqm_A          167 PGFELGTDSDGFFRLEEQPKKVVVVGAGYIGIELAGVFHG--LGSETHLVIRGETVLRKFDECIQNTITDHYVKEGINVH  244 (479)
T ss_dssp             TTGGGSBCHHHHHHCSSCCSEEEEECSSHHHHHHHHHHHH--TTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEE
T ss_pred             CCcccccchHHHhcccccCCeEEEECCCHHHHHHHHHHHH--cCCceEEEEeCCccccccCHHHHHHHHHHHHhCCeEEE
Confidence            432 111222333323457999999999999999999985  48899999999999999999999999999999999999


Q ss_pred             ecceeeecccCC-C---eEEcCCC-cEEecCEEEEccCCCCCchh-hhccccccccCCCCcEEeCCCeeecCCCCeEEec
Q 017664          201 LNQSVTLNTISD-G---LIETSSG-ETIDTDCHFMCTGKAMASSW-LRETILKDSLDGRGRLMVDENLRVRGFKNVFAIG  274 (368)
Q Consensus       201 ~~~~v~~i~~~~-~---~v~~~~g-~~i~~d~vi~a~G~~p~~~~-~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~G  274 (368)
                      +++.|.+++.++ +   .+.+.+| +++++|.||+|+|++|+..+ +...++  .++++|+|.||+++|| +.|||||+|
T Consensus       245 ~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~l~l~~~gl--~~~~~G~i~vd~~~~t-~~~~IyA~G  321 (479)
T 2hqm_A          245 KLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGI--KLNSHDQIIADEYQNT-NVPNIYSLG  321 (479)
T ss_dssp             CSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECCCSSGGGGTC--CBCTTSCBCCCTTCBC-SSTTEEECG
T ss_pred             eCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCccccChhhcCc--eECCCCCEeECCCCcc-CCCCEEEEE
Confidence            999999987643 2   5778888 78999999999999999855 455444  6788899999999998 899999999


Q ss_pred             ccCCCCccchHHHHHHHHHHHHHHHHHHH---cCCC-C--CCccccccCCCeEEEeecCCcceeEe----------cCc-
Q 017664          275 DITDIPEIKQGYLAQKHALVTAKNLKKLM---MGRN-K--GTMATYKPGYPIALVSLGRREGVAHF----------PFL-  337 (368)
Q Consensus       275 D~~~~~~~~~~~~a~~~g~~aa~~i~~~l---~g~~-~--~~~~~~~~~~~~~~~~~g~~~~~~~~----------~~~-  337 (368)
                      ||++.+  .+++.|.+||+.+|+||....   .+.. .  .+...|+ .|+++.+|+++.++..+.          ++. 
T Consensus       322 D~~~~~--~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~p~~~~~-~~~~~~vGl~e~~a~~~~~~~~~~~~~~~~~~  398 (479)
T 2hqm_A          322 DVVGKV--ELTPVAIAAGRKLSNRLFGPEKFRNDKLDYENVPSVIFS-HPEAGSIGISEKEAIEKYGKENIKVYNSKFTA  398 (479)
T ss_dssp             GGTTSS--CCHHHHHHHHHHHHHHHHSCGGGTTCCCCCTTCCEEECC-SSCEEEEECCHHHHHHHHCGGGEEEEEEEECC
T ss_pred             ecCCCc--ccHHHHHHHHHHHHHHhcCCCccCcccCCCCCCCeEEEC-CCCeEEEeCCHHHHHhcCCCCcEEEEEEeccH
Confidence            998754  378899999999999998321   1100 0  0111232 477899999887664321          111 


Q ss_pred             ----cccCccceeeeccccchhHHHHHcCCCCC
Q 017664          338 ----TISGRIPGWIKSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       338 ----~~~~~~~~~~k~~~~~~~~~~~~lG~~~~  366 (368)
                          ...+...+++|+  ++++++++|||+|+.
T Consensus       399 ~~~~~~~~~~~~~~kl--i~~~~~~~ilG~~~~  429 (479)
T 2hqm_A          399 MYYAMLSEKSPTRYKI--VCAGPNEKVVGLHIV  429 (479)
T ss_dssp             GGGGGCSSCCCEEEEE--EEETTTTEEEEEEEE
T ss_pred             HHHHhhcCCCcEEEEE--EEECCCCEEEEEEEE
Confidence                124556789998  999999999999863

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.9e-43  Score=336.05  Aligned_cols=338  Identities=20%  Similarity=0.298  Sum_probs=245.2

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc---CCcEEEEcCCCceeeeccceeeeeccccc-ccceeeccccc---CceeEEEe-E
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYFEITWASLRAVVEPSFA-VRSVINHGDYL---SNVKIVVS-T   86 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~-~   86 (368)
                      +++||+|||||+||+++|..|++   +.+|+|||+++.+++....+......... ........+++   .+++++.. +
T Consensus         2 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~   81 (449)
T 3kd9_A            2 SLKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAE   81 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------CTHHHHTTCEEETTCE
T ss_pred             CcCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCE
Confidence            35799999999999999999973   78999999999876554333332221111 11111111111   36777766 7


Q ss_pred             EEEeecc--EEEecCC-eEEEecEEEEecCCCCCCCCchHH---------HHHHHHHHHHHHh--cCCeEEEEcCchhHH
Q 017664           87 AVSITDT--EVVTAGG-QTFVYDYVVVATGHVESVPKSRTE---------RLSQYEKDFEKVK--SANSVLIVGGGPTGV  152 (368)
Q Consensus        87 ~~~~~~~--~v~~~~g-~~~~~d~lvlAtG~~~~~p~~~~~---------~~~~~~~~~~~~~--~~~~v~VvG~g~~~~  152 (368)
                      +..++..  .+.+.++ ..+.||+||+|||+.|..|++++.         ...+.....+...  .+++++|||+|++|+
T Consensus        82 v~~i~~~~~~v~~~~g~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~  161 (449)
T 3kd9_A           82 VIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQVPAIEGVNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGI  161 (449)
T ss_dssp             EEEECSSEEEEECSSSEEEEECSEEEECCCEEECCCSCBTTTSTTEECSCSTHHHHHHHHHHSSSCCCEEEEECCSHHHH
T ss_pred             EEEEecCCCEEEECCceEEEEcCEEEECCCCCCCCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCeEEEECCCHHHH
Confidence            7777754  5666666 479999999999998766654321         1233333333333  578999999999999


Q ss_pred             HHHHHHhhhCCCCeEEEEecCcccccc-cCchhHHHHHHHHHcCCcEEEecceeeecccCCC-eEEcCCCcEEecCEEEE
Q 017664          153 ELAGEIAVDFPDKKVILVHRGPKLLEF-VGSRASQIALDWLTSKKVEVILNQSVTLNTISDG-LIETSSGETIDTDCHFM  230 (368)
Q Consensus       153 e~a~~l~~~~~~~~v~~i~~~~~~l~~-~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~v~~~~g~~i~~d~vi~  230 (368)
                      |+|..+.+  .+.+|+++++.+++++. +++++.+.+.+.+++. |++++++.+.+++.++. ...+.+++++++|.||+
T Consensus       162 E~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~~~v~~v~~~g~~i~~D~Vv~  238 (449)
T 3kd9_A          162 EMAEAFAA--QGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKH-VNLRLQEITMKIEGEERVEKVVTDAGEYKAELVIL  238 (449)
T ss_dssp             HHHHHHHH--TTCEEEEEESSSSTTTTTSCHHHHHHHHHHHTTT-SEEEESCCEEEEECSSSCCEEEETTEEEECSEEEE
T ss_pred             HHHHHHHh--CCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhC-cEEEeCCeEEEEeccCcEEEEEeCCCEEECCEEEE
Confidence            99999985  58899999999999987 8999999999999999 99999999998876654 33455678899999999


Q ss_pred             ccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCc--------cchHHHHHHHHHHHHHHHHHH
Q 017664          231 CTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPE--------IKQGYLAQKHALVTAKNLKKL  302 (368)
Q Consensus       231 a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~--------~~~~~~a~~~g~~aa~~i~~~  302 (368)
                      |+|++|+.+++...++  .++++|++.||+++|| +.|||||+|||+..+.        +++++.|.+||+.+|+||.  
T Consensus       239 a~G~~p~~~l~~~~gl--~~~~~G~i~vd~~~~t-~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~~~g~~aa~~i~--  313 (449)
T 3kd9_A          239 ATGIKPNIELAKQLGV--RIGETGAIWTNEKMQT-SVENVYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIA--  313 (449)
T ss_dssp             CSCEEECCHHHHHTTC--CBCTTSSBCCCTTCBC-SSTTEEECSTTBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHT--
T ss_pred             eeCCccCHHHHHhCCc--cCCCCCCEEECCCCcc-CCCCEEEeeeeeeeccccCCceEEeccHHHHHHHHHHHHHHhc--
Confidence            9999999988776665  6788899999999999 8999999999985321        3578999999999999997  


Q ss_pred             HcCCCCCCcccc-------ccCCCeEEEeecCCcceeE--------ecC---c-cccCccceeeeccccchhHHHHHcCC
Q 017664          303 MMGRNKGTMATY-------KPGYPIALVSLGRREGVAH--------FPF---L-TISGRIPGWIKSRDLFVGKTRKQLGL  363 (368)
Q Consensus       303 l~g~~~~~~~~~-------~~~~~~~~~~~g~~~~~~~--------~~~---~-~~~~~~~~~~k~~~~~~~~~~~~lG~  363 (368)
                        |++.. ...+       ...|+++.+|+.+.+|...        +..   . ...+...+++|+  ++++++++|||+
T Consensus       314 --g~~~~-~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~kl--i~~~~~~~ilG~  388 (449)
T 3kd9_A          314 --GKELH-FPGVLGTAVTKFMDVEIGKTGLTEMEALKEGYDVRTAFIKASTRPHYYPGGREIWLKG--VVDNETNRLLGV  388 (449)
T ss_dssp             --TCCCC-CCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCEEEEEEEEESSCTTSTTCCEEEEEE--EEETTTCBEEEE
T ss_pred             --CCCcc-CCCcccceEEEEcCcEEEEecCCHHHHHHCCCceEEEEEecCCccccCCCCceEEEEE--EEECCCCEEEEE
Confidence              43321 1111       1246788888887765321        111   1 123556789999  999999999999


Q ss_pred             CC
Q 017664          364 KP  365 (368)
Q Consensus       364 ~~  365 (368)
                      |+
T Consensus       389 ~~  390 (449)
T 3kd9_A          389 QV  390 (449)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=100.00  E-value=6.1e-44  Score=342.46  Aligned_cols=342  Identities=18%  Similarity=0.191  Sum_probs=251.2

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc--CCcEEEEc--------CCCceeeeccce---e---------------e----eec
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS--FADVVLID--------EKEYFEITWASL---R---------------A----VVE   62 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~--g~~v~lie--------~~~~~~~~~~~~---~---------------~----~~~   62 (368)
                      .++||+||||||+|+++|++|++  |++|+|||        +.+.+|+.+...   .               .    ...
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~   81 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWE   81 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEE
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcCcc
Confidence            46899999999999999999864  99999999        244454432110   0               0    000


Q ss_pred             ---c--cccccceee------------cccc--cC-ceeEEEeEEEEeeccEEEec-----CC---eEEEecEEEEecCC
Q 017664           63 ---P--SFAVRSVIN------------HGDY--LS-NVKIVVSTAVSITDTEVVTA-----GG---QTFVYDYVVVATGH  114 (368)
Q Consensus        63 ---~--~~~~~~~~~------------~~~~--~~-~~~~~~~~~~~~~~~~v~~~-----~g---~~~~~d~lvlAtG~  114 (368)
                         .  .+....+..            ....  .. +++++.+.+..++++++...     ++   ..+.||+||+|||+
T Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~g~~~~~~~~d~lviAtGs  161 (490)
T 1fec_A           82 LDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGS  161 (490)
T ss_dssp             CCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECCCE
T ss_pred             cCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeEEEEeeCCEEEEEeeccCCCCceEEEEcCEEEEeCCC
Confidence               0  000000000            0011  13 78899999989998877663     56   78999999999999


Q ss_pred             CCCCCCchHH-HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCC-CCeEEEEecCcccccccCchhHHHHHHHH
Q 017664          115 VESVPKSRTE-RLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFP-DKKVILVHRGPKLLEFVGSRASQIALDWL  192 (368)
Q Consensus       115 ~~~~p~~~~~-~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~-~~~v~~i~~~~~~l~~~~~~~~~~~~~~l  192 (368)
                      .|..|++++. .+.+..........+++++|||+|++|+|+|..+.+..+ +.+|+++++.+++++.+++++.+.+.+.+
T Consensus       162 ~p~~p~i~g~~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l  241 (490)
T 1fec_A          162 WPQHLGIEGDDLCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQL  241 (490)
T ss_dssp             EECCCCSBTGGGCBCHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHH
T ss_pred             CCCCCCCCCccceecHHHHhhhhhcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccccCHHHHHHHHHHH
Confidence            9877765432 222222222222347899999999999999999986422 88999999999999999999999999999


Q ss_pred             HcCCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCC
Q 017664          193 TSKKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKN  269 (368)
Q Consensus       193 ~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~  269 (368)
                      ++.||++++++.|.+++.+++   .+.+.+|+++++|.||+|+|++|+.+++....+++.++++|+|.||+++|| +.|+
T Consensus       242 ~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~I~Vd~~~~t-~~~~  320 (490)
T 1fec_A          242 RANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKT-NVDN  320 (490)
T ss_dssp             HHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBC-SSTT
T ss_pred             HhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCccccCchhcCccCCCCCCEEECCCCcc-CCCC
Confidence            999999999999999986642   678889989999999999999999875422233446788899999999998 8999


Q ss_pred             eEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCccccc-------cCCCeEEEeecCCcceeE--------e
Q 017664          270 VFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYK-------PGYPIALVSLGRREGVAH--------F  334 (368)
Q Consensus       270 ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~~~~~~~~-------~~~~~~~~~~g~~~~~~~--------~  334 (368)
                      |||+|||++.+  ++++.|.+||+.+|+||.    |..... ..|.       ..++++.+|+++.++...        .
T Consensus       321 IyA~GD~~~~~--~l~~~A~~~g~~aa~~i~----g~~~~~-~~~~~~p~~~~~~~~~a~vG~~e~~a~~~~~~~~~~~~  393 (490)
T 1fec_A          321 IYAIGDVTDRV--MLTPVAINEGAAFVDTVF----ANKPRA-TDHTKVACAVFSIPPMGVCGYVEEDAAKKYDQVAVYES  393 (490)
T ss_dssp             EEECGGGGCSC--CCHHHHHHHHHHHHHHHH----SSCCCC-CCCSSCCEEECCSSCEEEEECCHHHHHHHCSEEEEEEE
T ss_pred             EEEEeccCCCc--cCHHHHHHHHHHHHHHhc----CCCCCc-CCCCCccEEEECCCCeEEEeCCHHHHHhcCCCEEEEEe
Confidence            99999999753  478999999999999998    322111 1111       257889999988766432        1


Q ss_pred             cCcc----c-cCccceee-eccccchhHHHHHcCCCCC
Q 017664          335 PFLT----I-SGRIPGWI-KSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       335 ~~~~----~-~~~~~~~~-k~~~~~~~~~~~~lG~~~~  366 (368)
                      ++..    + .+...+++ |+  ++++++++|||+|+.
T Consensus       394 ~~~~~~~~~~~~~~~~~~~kl--i~~~~~~~ilG~~~~  429 (490)
T 1fec_A          394 SFTPLMHNISGSTYKKFMVRI--VTNHADGEVLGVHML  429 (490)
T ss_dssp             EECCHHHHHHSCTTCCEEEEE--EEETTTTEEEEEEEE
T ss_pred             ecChhhhhhhcCCCeEEEEEE--EEECCCCEEEEEEEE
Confidence            1111    1 23557889 98  999999999999863

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=100.00  E-value=7.8e-44  Score=340.85  Aligned_cols=340  Identities=22%  Similarity=0.266  Sum_probs=236.2

Q ss_pred             CCcEEEECCChHHHHHHHHhh-c--CCcEEEEcCCCceeeeccceeeeecccccc-c-c------eeeccccc---Ccee
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-S--FADVVLIDEKEYFEITWASLRAVVEPSFAV-R-S------VINHGDYL---SNVK   81 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~--g~~v~lie~~~~~~~~~~~~~~~~~~~~~~-~-~------~~~~~~~~---~~~~   81 (368)
                      ++||+|||||+||+++|..|+ +  +.+|+|||+++.+++....+.......+.. . .      +....+++   .+++
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~   82 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVE   82 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcE
Confidence            579999999999999999997 3  899999999998765443333222211110 1 1      11111111   2455


Q ss_pred             EE-EeEEEEeecc--EEEecC---Ce--EEEecEEEEecCCCCCCCCchHH---------HHHHHHHHHHHH--hcCCeE
Q 017664           82 IV-VSTAVSITDT--EVVTAG---GQ--TFVYDYVVVATGHVESVPKSRTE---------RLSQYEKDFEKV--KSANSV  142 (368)
Q Consensus        82 ~~-~~~~~~~~~~--~v~~~~---g~--~~~~d~lvlAtG~~~~~p~~~~~---------~~~~~~~~~~~~--~~~~~v  142 (368)
                      +. ..++..++..  .+.+.+   +.  .+.||+||+|||+.|..|++++.         ...+.....+.+  ..++++
T Consensus        83 ~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v  162 (472)
T 3iwa_A           83 ALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPPVEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKA  162 (472)
T ss_dssp             EECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCSCTTTTSBTEEECCSHHHHHHHHHHCCTTSCSEE
T ss_pred             EEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCCCEE
Confidence            53 4567777643  555443   54  78999999999998666554321         122233322222  247899


Q ss_pred             EEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc-ccCchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCC
Q 017664          143 LIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE-FVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSS  219 (368)
Q Consensus       143 ~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~  219 (368)
                      +|+|+|++|+|+|..+.+. .+.+|+++++.+++++ .+++++.+.+.+.+++.||+++++++|.+++.+++  .+.+.+
T Consensus       163 vViGgG~~g~e~A~~l~~~-~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~  241 (472)
T 3iwa_A          163 VIVGGGFIGLEMAVSLADM-WGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVARVITD  241 (472)
T ss_dssp             EEECCSHHHHHHHHHHHHH-HCCEEEEECSSSSSSTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEES
T ss_pred             EEECCCHHHHHHHHHHHHh-cCCcEEEEEccCcccccccCHHHHHHHHHHHHhcCCEEEeCCEEEEEEccCCeEEEEEeC
Confidence            9999999999999998852 2789999999999998 88999999999999999999999999999987555  577888


Q ss_pred             CcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCc--------cchHHHHHHH
Q 017664          220 GETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPE--------IKQGYLAQKH  291 (368)
Q Consensus       220 g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~--------~~~~~~a~~~  291 (368)
                      |+++++|.||+|+|++|+.+++...++  .++++|++.||+++|| +.|||||+|||+..+.        +++++.|.+|
T Consensus       242 g~~i~aD~Vv~a~G~~p~~~l~~~~gl--~~~~~g~i~vd~~~~t-~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~~  318 (472)
T 3iwa_A          242 KRTLDADLVILAAGVSPNTQLARDAGL--ELDPRGAIIVDTRMRT-SDPDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQ  318 (472)
T ss_dssp             SCEEECSEEEECSCEEECCHHHHHHTC--CBCTTCCEECCTTCBC-SSTTEEECGGGEEEEBTTTSSEECCCCTTHHHHH
T ss_pred             CCEEEcCEEEECCCCCcCHHHHHhCCc--cCCCCCCEEECCCccc-CCCCEEEeccceecccccCCceeecchHHHHHHH
Confidence            889999999999999999888766554  6788999999999998 8999999999984321        3467899999


Q ss_pred             HHHHHHHHHHHHcCCCCCC--ccc-c---ccCCCeEEEeecCCcceeE--------ecCc---cc-cCccceeeeccccc
Q 017664          292 ALVTAKNLKKLMMGRNKGT--MAT-Y---KPGYPIALVSLGRREGVAH--------FPFL---TI-SGRIPGWIKSRDLF  353 (368)
Q Consensus       292 g~~aa~~i~~~l~g~~~~~--~~~-~---~~~~~~~~~~~g~~~~~~~--------~~~~---~~-~~~~~~~~k~~~~~  353 (368)
                      |+.||+||.    |++...  ..+ +   .+.++++.+|+.+.+|...        +...   .+ .+...+++|+  ++
T Consensus       319 g~~aa~~i~----g~~~~~~~~~~~~~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~kl--i~  392 (472)
T 3iwa_A          319 GRVIGTNLA----DGDATFPGAVGSWAVKLFEGSASGAGLTVEGALREGYDAVNVHVEQFDRAHFYPEKTIMTLQL--VV  392 (472)
T ss_dssp             HHHHHHHHT----TCCCCCCCBCCCEEEECSSCEEEEEECCHHHHHHTTCCEEEEEEEC-----------CEEEEE--EE
T ss_pred             HHHHHHHhc----CCCccCCCCCcceEEEECCceeEEEECCHHHHHHcCCceEEEEEecCCccCccCCCceEEEEE--EE
Confidence            999999997    433211  101 0   1257788899888765321        1111   12 2666789999  99


Q ss_pred             hhHHHHHcCCCC
Q 017664          354 VGKTRKQLGLKP  365 (368)
Q Consensus       354 ~~~~~~~lG~~~  365 (368)
                      ++++++|||+|+
T Consensus       393 ~~~~~~ilG~~~  404 (472)
T 3iwa_A          393 DRPTRRVLGIQG  404 (472)
T ss_dssp             ETTTCBEEEEEE
T ss_pred             ECCCCEEEEEEE
Confidence            999999999986

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=100.00  E-value=9.5e-44  Score=343.78  Aligned_cols=341  Identities=21%  Similarity=0.295  Sum_probs=253.8

Q ss_pred             cCCCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeecccee---ee--e-----------------cccccc
Q 017664           11 AGLVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLR---AV--V-----------------EPSFAV   67 (368)
Q Consensus        11 ~~~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~---~~--~-----------------~~~~~~   67 (368)
                      +.++.++||+|||||++|+++|.+|++ |++|+|||+++.+|..+....   ..  .                 -+....
T Consensus        38 ~~~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~  117 (523)
T 1mo9_A           38 ENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTE  117 (523)
T ss_dssp             TTCCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTT
T ss_pred             CCCCCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHHh
Confidence            455667999999999999999999984 999999999986654321100   00  0                 000000


Q ss_pred             ------cc---eee-cc---ccc-------CceeEE-EeEEEEeeccEEEecCCeEEEecEEEEecCCCCCCCCchHH--
Q 017664           68 ------RS---VIN-HG---DYL-------SNVKIV-VSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTE--  124 (368)
Q Consensus        68 ------~~---~~~-~~---~~~-------~~~~~~-~~~~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~~--  124 (368)
                            ..   +.. ..   +++       .+++++ ...+..++++++.+. +..+.||+||+|||+.|..|++++.  
T Consensus       118 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~v~~~-g~~~~~d~lViATGs~p~~p~i~G~~~  196 (523)
T 1mo9_A          118 KVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEAA-GKVFKAKNLILAVGAGPGTLDVPGVNA  196 (523)
T ss_dssp             CCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTEEEET-TEEEEBSCEEECCCEECCCCCSTTTTS
T ss_pred             hhhhHHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeCCEEEEC-CEEEEeCEEEECCCCCCCCCCCCCccc
Confidence                  00   000 01   111       267777 778888888888775 7789999999999999877765421  


Q ss_pred             -HHHHHHHHH-HHHhcC-CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEe
Q 017664          125 -RLSQYEKDF-EKVKSA-NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVIL  201 (368)
Q Consensus       125 -~~~~~~~~~-~~~~~~-~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~  201 (368)
                       .+.+..... ...... ++++|||+|++|+|+|..+.+  .+.+|+++++.+++++.+++++...+.+.+++.||++++
T Consensus       197 ~~v~~~~~~~~~l~~~~g~~vvViGgG~~g~E~A~~l~~--~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~  274 (523)
T 1mo9_A          197 KGVFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNA--TGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIIS  274 (523)
T ss_dssp             BTEEEHHHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEES
T ss_pred             CcEeeHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEecCcccccccHHHHHHHHHHHHhCCcEEEE
Confidence             123333333 222235 999999999999999999985  588999999999999989999999999999999999999


Q ss_pred             cceeeecccCCC------eEEcCCCc-EEecCEEEEccCCCCCch-hhhccccccccCCCCcEEeCCCeeecCCCCeEEe
Q 017664          202 NQSVTLNTISDG------LIETSSGE-TIDTDCHFMCTGKAMASS-WLRETILKDSLDGRGRLMVDENLRVRGFKNVFAI  273 (368)
Q Consensus       202 ~~~v~~i~~~~~------~v~~~~g~-~i~~d~vi~a~G~~p~~~-~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~  273 (368)
                      ++.|++++.+++      .+.+.+|+ ++++|.||+|+|++|+.+ ++...++  .++++|+|.||+++|| +.|+|||+
T Consensus       275 ~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~~~l~~~gl--~~~~~G~i~Vd~~~~t-~~~~IyA~  351 (523)
T 1mo9_A          275 GSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGL--DLGPKGEVLVNEYLQT-SVPNVYAV  351 (523)
T ss_dssp             SCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCHHHHHHHTC--CBCTTSCBCCCTTSBC-SSTTEEEC
T ss_pred             CCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCccCHHHcCC--ccCCCCCEEECCCCcc-CCCCEEEE
Confidence            999999876432      36778887 899999999999999988 6776655  6678899999999998 89999999


Q ss_pred             cccCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCC----Cc-cccccCCCeEEEeecCCccee--------EecCcc--
Q 017664          274 GDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKG----TM-ATYKPGYPIALVSLGRREGVA--------HFPFLT--  338 (368)
Q Consensus       274 GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~~----~~-~~~~~~~~~~~~~~g~~~~~~--------~~~~~~--  338 (368)
                      |||++.+  .+++.|.+||+.||+||.    |.+..    .. ......|+++.+|+++.++..        .+++..  
T Consensus       352 GD~~~~~--~~~~~A~~~g~~aa~~i~----g~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~  425 (523)
T 1mo9_A          352 GDLIGGP--MEMFKARKSGCYAARNVM----GEKISYTPKNYPDFLHTHYEVSFLGMGEEEARAAGHEIVTIKMPPDTEN  425 (523)
T ss_dssp             GGGGCSS--CSHHHHHHHHHHHHHHHT----TCCCCCCCCSCCEEEESSSEEEEEECCHHHHHHTTCCEEEEEESCCSTT
T ss_pred             eecCCCc--ccHHHHHHHHHHHHHHHc----CCCCCCCCCCCCeEEECCCceEEEeCCHHHHHhCCCCEEEEEEeccccc
Confidence            9999865  378899999999999997    33211    01 111135778888888765532        222221  


Q ss_pred             -----------------cc--CccceeeeccccchhHHHHHcCCCC
Q 017664          339 -----------------IS--GRIPGWIKSRDLFVGKTRKQLGLKP  365 (368)
Q Consensus       339 -----------------~~--~~~~~~~k~~~~~~~~~~~~lG~~~  365 (368)
                                       ..  +...+++|+  ++++++++|||+|+
T Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~--~~~~~~~~ilG~~~  469 (523)
T 1mo9_A          426 GLNVALPASDRTMLYAFGKGTAHMSGFQKI--VIDAKTRKVLGAHH  469 (523)
T ss_dssp             TTCSSCSCCTTTHHHHHSTTTGGGGCEEEE--EEETTTCBEEEEEE
T ss_pred             ccccccccccccccceEEeecCCCCEEEEE--EEECCCCEEEEEEE
Confidence                             12  555789998  99999999999986

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=100.00  E-value=5.5e-44  Score=342.53  Aligned_cols=341  Identities=17%  Similarity=0.236  Sum_probs=248.6

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccce---e---------------eee-------ccccc
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASL---R---------------AVV-------EPSFA   66 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~---~---------------~~~-------~~~~~   66 (368)
                      |+.++||+|||||+||+++|.+|+ .|++|+|||+++.++..+...   .               ...       .....
T Consensus         3 m~~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~~   82 (482)
T 1ojt_A            3 ADAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELD   82 (482)
T ss_dssp             SEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCC
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCccC
Confidence            445689999999999999999998 499999999977665322100   0               000       00000


Q ss_pred             ccceeec------------ccc--cCceeEEEeEEEEeeccEEEe--cCC------------eEEEecEEEEecCCCCCC
Q 017664           67 VRSVINH------------GDY--LSNVKIVVSTAVSITDTEVVT--AGG------------QTFVYDYVVVATGHVESV  118 (368)
Q Consensus        67 ~~~~~~~------------~~~--~~~~~~~~~~~~~~~~~~v~~--~~g------------~~~~~d~lvlAtG~~~~~  118 (368)
                      ...+...            ..+  ..+++++......++.+.+..  .++            ..++||+||+|||+.|..
T Consensus        83 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p~~  162 (482)
T 1ojt_A           83 IDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTK  162 (482)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEEccCCEEEEEecCCcccccccccCcceEEEcCEEEECCCCCCCC
Confidence            0000000            011  126788888777777765443  345            679999999999999776


Q ss_pred             CC-chHH-HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCC
Q 017664          119 PK-SRTE-RLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKK  196 (368)
Q Consensus       119 p~-~~~~-~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~g  196 (368)
                      |+ ++.. .+.+..........+++++|||+|++|+|+|..+.+  .+.+|+++++.+++++.+++++.+.+.+.+++.|
T Consensus       163 ~~~i~~~~~v~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~--~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~g  240 (482)
T 1ojt_A          163 LPFIPEDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYST--LGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRF  240 (482)
T ss_dssp             CSSCCCCTTEECHHHHTTCCCCCSEEEEESCSHHHHHHHHHHHH--HTCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGE
T ss_pred             CCCCCccCcEEcHHHHhcccccCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEECCccccccCHHHHHHHHHHHHhcC
Confidence            65 3211 222233322222347899999999999999999986  4889999999999999999999999999999999


Q ss_pred             cEEEecceeeecccCCC--eEEcCC----CcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCe
Q 017664          197 VEVILNQSVTLNTISDG--LIETSS----GETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNV  270 (368)
Q Consensus       197 v~i~~~~~v~~i~~~~~--~v~~~~----g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~i  270 (368)
                      |++++++.|.+++.+++  .+.+.+    |+++++|.||+|+|++|+.+++....+++.++++|+|.||+++|| +.|||
T Consensus       241 V~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t-~~~~I  319 (482)
T 1ojt_A          241 DNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRT-NVPHI  319 (482)
T ss_dssp             EEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEECGGGTTGGGTTCCCCTTSCCCCCTTSBC-SSTTE
T ss_pred             CEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcCCCCCChhhcCceeCCCCCEeeCCCccc-CCCCE
Confidence            99999999999876554  566665    778999999999999999987533333446777899999999998 89999


Q ss_pred             EEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCccccc-------cCCCeEEEeecCCccee--------Eec
Q 017664          271 FAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYK-------PGYPIALVSLGRREGVA--------HFP  335 (368)
Q Consensus       271 fa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~~~~~~~~-------~~~~~~~~~~g~~~~~~--------~~~  335 (368)
                      ||+|||++.+  ++++.|.+||+.||+||.    |.+. + ..|.       ..|+++.+|+++.+|..        .++
T Consensus       320 yA~GD~~~~~--~l~~~A~~~g~~aa~~i~----g~~~-~-~~~~~~p~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~  391 (482)
T 1ojt_A          320 YAIGDIVGQP--MLAHKAVHEGHVAAENCA----GHKA-Y-FDARVIPGVAYTSPEVAWVGETELSAKASARKITKANFP  391 (482)
T ss_dssp             EECGGGTCSS--CCHHHHHHHHHHHHHHHT----TCCC-C-CCCCCCCEEECSSSCEEEEECCHHHHHHHTCCEEEEEEE
T ss_pred             EEEEcccCCC--ccHHHHHHHHHHHHHHHc----CCCc-c-CCCCCCCEEEEcCCCeEEEeCCHHHHHhcCCCEEEEEEE
Confidence            9999999864  478999999999999997    3321 1 1121       25788999988765532        222


Q ss_pred             Cc-----cccCccceeeeccccchhHHHHHcCCCCC
Q 017664          336 FL-----TISGRIPGWIKSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       336 ~~-----~~~~~~~~~~k~~~~~~~~~~~~lG~~~~  366 (368)
                      +.     ...+...+++|+  ++++++++|||+|+.
T Consensus       392 ~~~~~~~~~~~~~~~~~k~--~~~~~~~~ilG~~~~  425 (482)
T 1ojt_A          392 WAASGRAIANGCDKPFTKL--IFDAETGRIIGGGIV  425 (482)
T ss_dssp             GGGCHHHHHTTCCSCEEEE--EEETTTCBEEEEEEE
T ss_pred             cCcchHHhhcCCCcEEEEE--EEECCCCEEEEEEEE
Confidence            21     124556789999  999999999999863

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=100.00  E-value=4.5e-44  Score=341.72  Aligned_cols=339  Identities=19%  Similarity=0.200  Sum_probs=248.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeee--------------------ecccccccce--
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAV--------------------VEPSFAVRSV--   70 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~--------------------~~~~~~~~~~--   70 (368)
                      ++++||+||||||||+++|..|+ .|.+|+|||+++.+|+.|......                    ....+....+  
T Consensus         2 ~~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~   81 (466)
T 3l8k_A            2 SLKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQD   81 (466)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHH
T ss_pred             CccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHH
Confidence            44689999999999999999997 599999999888877554211000                    0000000000  


Q ss_pred             -----------eeccccc--CceeEEEeEEEEeecc--EEEecCCeE--EEecEEEEecCCCCCCCCchHH-HHHHHHHH
Q 017664           71 -----------INHGDYL--SNVKIVVSTAVSITDT--EVVTAGGQT--FVYDYVVVATGHVESVPKSRTE-RLSQYEKD  132 (368)
Q Consensus        71 -----------~~~~~~~--~~~~~~~~~~~~~~~~--~v~~~~g~~--~~~d~lvlAtG~~~~~p~~~~~-~~~~~~~~  132 (368)
                                 .....++  .+++++.+++..++++  .+.+.+++.  +.||+||+|||+.|..|++++. .+.+....
T Consensus        82 ~~~~~~~l~~~~~~~~~~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~t~~~~  161 (466)
T 3l8k_A           82 RKDYVQELRFKQHKRNMSQYETLTFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAKLRLPGVEYCLTSDDI  161 (466)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTEEEESEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCCCCTTGGGSBCHHHH
T ss_pred             HHHhheeccccchHHHHHHhCCCEEEEeEEEEecCCeEEEEcCCCcEEEEecCEEEECCCCCccCCCCCCccceEeHHHH
Confidence                       0011111  2688888888888876  456667777  9999999999999776665432 23333333


Q ss_pred             H----HHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccc-CchhHHHHHHHHHcCCcEEEecceeee
Q 017664          133 F----EKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFV-GSRASQIALDWLTSKKVEVILNQSVTL  207 (368)
Q Consensus       133 ~----~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~-~~~~~~~~~~~l~~~gv~i~~~~~v~~  207 (368)
                      .    .....+++++|||+|++|+|+|..+.+  .+.+|+++++.+++++.+ ++++.+.+.+.++   |++++++.|.+
T Consensus       162 ~~~~~~l~~~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~---v~i~~~~~v~~  236 (466)
T 3l8k_A          162 FGYKTSFRKLPQDMVIIGAGYIGLEIASIFRL--MGVQTHIIEMLDRALITLEDQDIVNTLLSILK---LNIKFNSPVTE  236 (466)
T ss_dssp             HSTTCSCCSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSCTTSCCHHHHHHHHHHHC---CCEECSCCEEE
T ss_pred             HHHHHHHhhCCCeEEEECCCHHHHHHHHHHHH--cCCEEEEEEeCCcCCCCCCCHHHHHHHHhcCE---EEEEECCEEEE
Confidence            2    112247899999999999999999985  588999999999999887 9899988888887   99999999998


Q ss_pred             cccCC-C--eEEcC--CCc--EEecCEEEEccCCCCCchh-hhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCC
Q 017664          208 NTISD-G--LIETS--SGE--TIDTDCHFMCTGKAMASSW-LRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDI  279 (368)
Q Consensus       208 i~~~~-~--~v~~~--~g~--~i~~d~vi~a~G~~p~~~~-~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~  279 (368)
                      ++.++ +  .+.+.  +|+  ++++|.+|+|+|++|+.++ +...+  +.++++| +.||+++|| +.|||||+|||++.
T Consensus       237 i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~l~l~~~g--l~~~~~G-i~vd~~~~t-~~~~Iya~GD~~~~  312 (466)
T 3l8k_A          237 VKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIG--LSISKTG-IVVDETMKT-NIPNVFATGDANGL  312 (466)
T ss_dssp             EEEEETTEEEEEECCTTSCCEEEEESCEEECCCEEECCCTTTGGGT--CCBCSSS-BCCCTTCBC-SSTTEEECGGGTCS
T ss_pred             EEEcCCCcEEEEEEecCCceEEEEcCEEEECcCCCcccccchhhcC--ceeCCCC-EeECCCccC-CCCCEEEEEecCCC
Confidence            88754 4  46666  665  8999999999999999883 34444  4778889 999999999 89999999999986


Q ss_pred             CccchHHHHHHHHHHHHHHHHHH--HcCCC-C--CCccccccCCCeEEEeecCCccee--------EecCcc-----ccC
Q 017664          280 PEIKQGYLAQKHALVTAKNLKKL--MMGRN-K--GTMATYKPGYPIALVSLGRREGVA--------HFPFLT-----ISG  341 (368)
Q Consensus       280 ~~~~~~~~a~~~g~~aa~~i~~~--l~g~~-~--~~~~~~~~~~~~~~~~~g~~~~~~--------~~~~~~-----~~~  341 (368)
                      +  ++++.|.+||+.||+||...  ..... .  .+...| ..|+++.+|+++.+|..        .+++..     ..+
T Consensus       313 ~--~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~-~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~  389 (466)
T 3l8k_A          313 A--PYYHAAVRMSIAAANNIMANGMPVDYVDVKSIPVTIY-TIPSLSYVGILPSKARKMGIEIVEAEYNMEEDVSAQIYG  389 (466)
T ss_dssp             C--CSHHHHHHHHHHHHHHHHTTTSCCCCCCSTTSCEEEC-SSSCEEEEECCHHHHHHHTCCEEEEEEEGGGSHHHHHHT
T ss_pred             C--ccHhHHHHHHHHHHHHHhCCCCCccccCCCCCcEEEE-CCCCeEEecCCHHHHHhCCCCEEEEEEEcccChhheecC
Confidence            3  47899999999999999832  00000 0  001112 25789999998877642        222221     345


Q ss_pred             ccceeeeccccchhHHHHHcCCCCC
Q 017664          342 RIPGWIKSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       342 ~~~~~~k~~~~~~~~~~~~lG~~~~  366 (368)
                      ...+++|+  ++++++++|||+|+.
T Consensus       390 ~~~g~~k~--i~~~~~~~ilG~~~~  412 (466)
T 3l8k_A          390 QKEGVLKL--IFERGSMRLIGAWMI  412 (466)
T ss_dssp             CCCCEEEE--EEETTTCBEEEEEEE
T ss_pred             CCeEEEEE--EEECCCCEEEEEEEE
Confidence            66899999  999999999999863

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=100.00  E-value=1e-43  Score=338.98  Aligned_cols=337  Identities=20%  Similarity=0.234  Sum_probs=246.9

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccce---ee-------------------ee--cccccccce
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASL---RA-------------------VV--EPSFAVRSV   70 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~---~~-------------------~~--~~~~~~~~~   70 (368)
                      ++||+||||||||+++|.+|+ .|++|+|||+++ +|+.+...   ..                   ..  ........+
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   84 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELDLKKL   84 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEECHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcCHHHH
Confidence            589999999999999999998 499999999987 44322100   00                   00  000000000


Q ss_pred             ee------------ccccc--CceeEEEeEEEEeeccEEEecCCeEEEecEEEEecCCCCCCCC-chHH-HHHHHHHHHH
Q 017664           71 IN------------HGDYL--SNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPK-SRTE-RLSQYEKDFE  134 (368)
Q Consensus        71 ~~------------~~~~~--~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~p~-~~~~-~~~~~~~~~~  134 (368)
                      ..            ...++  .+++++.+.+..++++++.+. ++.++||+||+|||++|..|+ ++.. .+.+.....+
T Consensus        85 ~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~-g~~~~~d~lViATGs~p~~p~gi~~~~~v~~~~~~~~  163 (464)
T 2eq6_A           85 GGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVGPKEVEVG-GERYGAKSLILATGSEPLELKGFPFGEDVWDSTRALK  163 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEET-TEEEEEEEEEECCCEEECCBTTBCCSSSEECHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEccCCEEEEc-cEEEEeCEEEEcCCCCCCCCCCCCCCCcEEcHHHHHh
Confidence            00            01111  368888888877888888776 778999999999999987664 4321 2223333322


Q ss_pred             HHh-cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC
Q 017664          135 KVK-SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG  213 (368)
Q Consensus       135 ~~~-~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~  213 (368)
                      ... .+++++|||+|++|+|+|..+.+  .+.+|+++++.+++++.+++++.+.+.+.+++.||++++++.|.+++.+++
T Consensus       164 l~~~~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~  241 (464)
T 2eq6_A          164 VEEGLPKRLLVIGGGAVGLELGQVYRR--LGAEVTLIEYMPEILPQGDPETAALLRRALEKEGIRVRTKTKAVGYEKKKD  241 (464)
T ss_dssp             GGGCCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETT
T ss_pred             hhhhcCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEEcCCccccccCHHHHHHHHHHHHhcCCEEEcCCEEEEEEEeCC
Confidence            222 47899999999999999999985  488999999999999988999999999999999999999999999876554


Q ss_pred             --eEEcC-C--Cc--EEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHH
Q 017664          214 --LIETS-S--GE--TIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGY  286 (368)
Q Consensus       214 --~v~~~-~--g~--~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~  286 (368)
                        .+.+. +  |+  ++++|.||+|+|.+|+.+++....+++.++++|++.||+++|| +.|+|||+|||++.+.  +++
T Consensus       242 ~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~Iya~GD~~~~~~--l~~  318 (464)
T 2eq6_A          242 GLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNARMET-SVPGVYAIGDAARPPL--LAH  318 (464)
T ss_dssp             EEEEEEEETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCTTCBC-SSTTEEECGGGTCSSC--CHH
T ss_pred             EEEEEEeecCCCceeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECCCccc-CCCCEEEEeccCCCcc--cHH
Confidence              45554 5  76  8999999999999999886422223346677899999999998 8999999999997643  788


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCcc--ccc--cCCCeEEEeecCCccee--------EecCc-----cccCccceeeec
Q 017664          287 LAQKHALVTAKNLKKLMMGRNKGTMA--TYK--PGYPIALVSLGRREGVA--------HFPFL-----TISGRIPGWIKS  349 (368)
Q Consensus       287 ~a~~~g~~aa~~i~~~l~g~~~~~~~--~~~--~~~~~~~~~~g~~~~~~--------~~~~~-----~~~~~~~~~~k~  349 (368)
                      .|.+||+.+|+||.    |.+....+  ++.  ..|+++.+|+++.++..        .+++.     ...+...+++|+
T Consensus       319 ~A~~~g~~aa~~i~----g~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~  394 (464)
T 2eq6_A          319 KAMREGLIAAENAA----GKDSAFDYQVPSVVYTSPEWAGVGLTEEEAKRAGYKVKVGKFPLAASGRALTLGGAEGMVKV  394 (464)
T ss_dssp             HHHHHHHHHHHHHT----TCCCCCCCCCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTSCCCCEEEE
T ss_pred             HHHHHHHHHHHHhc----CCCcccCCCCCeEEECCCCEEEEeCCHHHHHhcCCCEEEEEEEcCcchhhhhcCCCcEEEEE
Confidence            99999999999997    33211001  111  24778888887765432        22221     123556789998


Q ss_pred             cccchhHHHHHcCCCC
Q 017664          350 RDLFVGKTRKQLGLKP  365 (368)
Q Consensus       350 ~~~~~~~~~~~lG~~~  365 (368)
                        ++++++++|||+|+
T Consensus       395 --~~~~~~~~ilG~~~  408 (464)
T 2eq6_A          395 --VGDEETDLLLGVFI  408 (464)
T ss_dssp             --EEETTTCBEEEEEE
T ss_pred             --EEECCCCEEEEEEE
Confidence              99999999999986

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=100.00  E-value=4.6e-44  Score=343.26  Aligned_cols=342  Identities=22%  Similarity=0.249  Sum_probs=252.9

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeecccee------------------ee----e---cccccccc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLR------------------AV----V---EPSFAVRS   69 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~------------------~~----~---~~~~~~~~   69 (368)
                      ++||+|||||++|+++|.+|+ +|++|+|||++ .+|+.+....                  ..    .   ...+....
T Consensus        26 ~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~-~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~  104 (484)
T 3o0h_A           26 DFDLFVIGSGSGGVRAARLAGALGKRVAIAEEY-RIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIFNWEK  104 (484)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEECHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCcCEEEEEeCC-CCCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCccCHHH
Confidence            689999999999999999998 59999999994 4443221000                  00    0   00000000


Q ss_pred             ee--------e----cccc--cCceeEEEeEEEEeeccEEEec-CCeEEEecEEEEecCCCCC-CCCchHHH-HHHHHHH
Q 017664           70 VI--------N----HGDY--LSNVKIVVSTAVSITDTEVVTA-GGQTFVYDYVVVATGHVES-VPKSRTER-LSQYEKD  132 (368)
Q Consensus        70 ~~--------~----~~~~--~~~~~~~~~~~~~~~~~~v~~~-~g~~~~~d~lvlAtG~~~~-~p~~~~~~-~~~~~~~  132 (368)
                      +.        .    ...+  ..+++++...+..++++.+.+. ++..+.||++++|||+.|. .|+++... +.+....
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~v~~~~~~~~~d~lviAtG~~p~~~p~i~G~~~~~~~~~~  184 (484)
T 3o0h_A          105 LVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDEHTLELSVTGERISAEKILIATGAKIVSNSAIKGSDLCLTSNEI  184 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTTCCEEEEEEEEECCCEEECCC--CBTGGGSBCTTTG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEecCCeEEEeCEEEEccCCCcccCCCCCCccccccHHHH
Confidence            00        0    0001  1267888888999998888876 7788999999999999987 77654322 1112222


Q ss_pred             HHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCC
Q 017664          133 FEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISD  212 (368)
Q Consensus       133 ~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~  212 (368)
                      ......+++++|+|+|++|+|+|..+.+  .+.+|+++++.+++++.+++++...+.+.+++.||++++++.|.+++.++
T Consensus       185 ~~~~~~~~~v~ViGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~  262 (484)
T 3o0h_A          185 FDLEKLPKSIVIVGGGYIGVEFANIFHG--LGVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIYEATVSQVQSTE  262 (484)
T ss_dssp             GGCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEESSCCEEEEEECS
T ss_pred             HhHHhcCCcEEEECcCHHHHHHHHHHHH--cCCeEEEEECCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEeeC
Confidence            2222347899999999999999999885  58899999999999999999999999999999999999999999998765


Q ss_pred             C--eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHH
Q 017664          213 G--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQK  290 (368)
Q Consensus       213 ~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~  290 (368)
                      +  .+.+.+|+++++|.||+|+|++|+.+++....+++.++++|++.||+++|+ +.|||||+|||++.+  ++++.|..
T Consensus       263 ~~v~v~~~~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~Iya~GD~~~~~--~~~~~A~~  339 (484)
T 3o0h_A          263 NCYNVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTT-NVSHIWAVGDVTGHI--QLTPVAIH  339 (484)
T ss_dssp             SSEEEEETTSCEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTTSBC-SSTTEEECGGGGTSC--CCHHHHHH
T ss_pred             CEEEEEECCCcEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCCCCC-CCCCEEEEEecCCCC--cCHHHHHH
Confidence            5  688889989999999999999999887433334457788999999999998 899999999999754  47899999


Q ss_pred             HHHHHHHHHHHHHcCC-CCC--CccccccCCCeEEEeecCCcceeE--------ecCcc-----ccCccceeeeccccch
Q 017664          291 HALVTAKNLKKLMMGR-NKG--TMATYKPGYPIALVSLGRREGVAH--------FPFLT-----ISGRIPGWIKSRDLFV  354 (368)
Q Consensus       291 ~g~~aa~~i~~~l~g~-~~~--~~~~~~~~~~~~~~~~g~~~~~~~--------~~~~~-----~~~~~~~~~k~~~~~~  354 (368)
                      ||+.+|+||+...... +..  +...| ..|+++.+|+++++|...        +++..     ..+...+++|+  +++
T Consensus       340 ~g~~aa~~i~~~~~~~~~~~~~p~~~~-~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~--~~~  416 (484)
T 3o0h_A          340 DAMCFVKNAFENTSTTPDYDLITTAVF-SQPEIGTVGLSEEDALHRYKRVEIYRTVFRPMRNVLSGSPEKMFMKL--VVD  416 (484)
T ss_dssp             HHHHHHHHHHC---CCCCCTTCCEEEC-CSSCEEEEECCHHHHHHHCSEEEEEEEEECCHHHHHHTCCCCEEEEE--EEE
T ss_pred             HHHHHHHHHcCCCCCcCCCCCCcEEEE-CCCCEEEeeCCHHHHHHcCCCEEEEEecCCcchhhccCCCCcEEEEE--EEE
Confidence            9999999998321110 000  00112 247899999998876432        22211     34566899999  999


Q ss_pred             hHHHHHcCCCCC
Q 017664          355 GKTRKQLGLKPT  366 (368)
Q Consensus       355 ~~~~~~lG~~~~  366 (368)
                      +++++|||+|+.
T Consensus       417 ~~~~~ilG~~~~  428 (484)
T 3o0h_A          417 GESRIVVGAHVL  428 (484)
T ss_dssp             TTTCBEEEEEEE
T ss_pred             CCCCEEEEEEEE
Confidence            999999999863

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=100.00  E-value=1.3e-43  Score=340.85  Aligned_cols=339  Identities=18%  Similarity=0.159  Sum_probs=249.9

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCC--------ceeeec---ccee-----------ee------------
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKE--------YFEITW---ASLR-----------AV------------   60 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~--------~~~~~~---~~~~-----------~~------------   60 (368)
                      .||++||||||||++||.++++ |.+|+|||+.+        .+|+..   +.++           ..            
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi~~  121 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGWKF  121 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCccc
Confidence            3799999999999999999875 99999999754        233211   0000           00            


Q ss_pred             ecccccccceeec------------ccc--cCceeEEEeEEEEeeccEEEe------cCCeEEEecEEEEecCCCCCCCC
Q 017664           61 VEPSFAVRSVINH------------GDY--LSNVKIVVSTAVSITDTEVVT------AGGQTFVYDYVVVATGHVESVPK  120 (368)
Q Consensus        61 ~~~~~~~~~~~~~------------~~~--~~~~~~~~~~~~~~~~~~v~~------~~g~~~~~d~lvlAtG~~~~~p~  120 (368)
                      ....+....+..+            ...  ..+++++.+...+++++++..      .+.+.+++|++|||||++|.+|+
T Consensus       122 ~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a~f~~~~~v~V~~~~~~~~~~~i~a~~iiIATGs~P~~P~  201 (542)
T 4b1b_A          122 DNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDKNTVSYYLKGDLSKEETVTGKYILIATGCRPHIPD  201 (542)
T ss_dssp             EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEEEETTEEEEEEC--CCCEEEEEEEEEEECCCEEECCCS
T ss_pred             CcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcCCCcceEeecccCCceEEEeeeeEEeccCCCCCCCC
Confidence            0000000000000            000  126889999999999987643      23467999999999999998885


Q ss_pred             c---hHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCc
Q 017664          121 S---RTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKV  197 (368)
Q Consensus       121 ~---~~~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv  197 (368)
                      .   ....+.+.+..+.....+++++|||+|++|+|+|..+++  .+.+|+++.+ +++++.+++++...+.+.|++.||
T Consensus       202 ~~~~~~~~~~ts~~~l~l~~lP~~lvIIGgG~IGlE~A~~~~~--lG~~VTii~~-~~~L~~~D~ei~~~l~~~l~~~gi  278 (542)
T 4b1b_A          202 DVEGAKELSITSDDIFSLKKDPGKTLVVGASYVALECSGFLNS--LGYDVTVAVR-SIVLRGFDQQCAVKVKLYMEEQGV  278 (542)
T ss_dssp             SSBTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHH--HTCCEEEEES-SCSSTTSCHHHHHHHHHHHHHTTC
T ss_pred             cccCCCccccCchhhhccccCCceEEEECCCHHHHHHHHHHHh--cCCeEEEecc-cccccccchhHHHHHHHHHHhhcc
Confidence            3   223334455554444568999999999999999999985  6899999987 467899999999999999999999


Q ss_pred             EEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcE-EeCCCeeecCCCCeEEec
Q 017664          198 EVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRL-MVDENLRVRGFKNVFAIG  274 (368)
Q Consensus       198 ~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i-~vd~~~~~~~~~~ifa~G  274 (368)
                      ++++++.+..++..++  .+.+.+++++++|.|++|+|++||++.+..+.+++.++.++.+ .+|+++|| +.|||||+|
T Consensus       279 ~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd~~~~T-s~p~IyAiG  357 (542)
T 4b1b_A          279 MFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHLSCT-NIPSIFAVG  357 (542)
T ss_dssp             EEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCCTTSBC-SSTTEEECT
T ss_pred             eeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCCccccCcccceeeecccCceEeccccccc-cCCCeEEec
Confidence            9999999998887666  6778888899999999999999999999888877777776654 77888998 899999999


Q ss_pred             ccCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCc-------cccccCCCeEEEeecCCcceeE--------ecC--c
Q 017664          275 DITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTM-------ATYKPGYPIALVSLGRREGVAH--------FPF--L  337 (368)
Q Consensus       275 D~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~--------~~~--~  337 (368)
                      ||++.. +.+++.|.+||+.+++||.    |......       ..| ..|+++.+|+++.+|...        +.+  .
T Consensus       358 Dv~~~~-p~La~~A~~eg~~aa~~i~----g~~~~~~d~~~iP~~vf-t~PeiA~VGlTE~eA~~~g~~~~v~~~~~~~~  431 (542)
T 4b1b_A          358 DVAENV-PELAPVAIKAGEILARRLF----KDSDEIMDYSYIPTSIY-TPIEYGACGYSEEKAYELYGKSNVEVFLQEFN  431 (542)
T ss_dssp             TSBTTC-CCCHHHHHHHHHHHHHHHH----SCCCCCCCCSSCCEEEC-SSSCEEEEECCHHHHHHHHCTTTEEEEEC---
T ss_pred             cccCCc-hhHHHHHHHHHHHHHHHHh----cCCCcccCCCCCceEEe-CCCCeEEEeCCHHHHHHhCCCCcEEEEEeecc
Confidence            999652 3488999999999999998    4322111       122 258999999998877421        111  0


Q ss_pred             --------------------cccCccceeeecccc-chhHHHHHcCCCCC
Q 017664          338 --------------------TISGRIPGWIKSRDL-FVGKTRKQLGLKPT  366 (368)
Q Consensus       338 --------------------~~~~~~~~~~k~~~~-~~~~~~~~lG~~~~  366 (368)
                                          .+.+...+++|+  + +++++++|||+|+.
T Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vKl--i~~~~~t~~ILGa~iv  479 (542)
T 4b1b_A          432 NLEISAVHRQKHIRAQKDEYDLDVSSTCLAKL--VCLKNEDNRVIGFHYV  479 (542)
T ss_dssp             --------------------------CCCEEE--EEETTTTTBEEEEEEE
T ss_pred             chhhhhhhhhhhhhcccccccccCCCceEEEE--EEEeCCCCEEEEEEEE
Confidence                                012344688997  5 57789999999863

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=100.00  E-value=1.6e-43  Score=339.19  Aligned_cols=344  Identities=20%  Similarity=0.245  Sum_probs=249.5

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCc------eeeeccce---e---------------e-eecc-----
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEY------FEITWASL---R---------------A-VVEP-----   63 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~------~~~~~~~~---~---------------~-~~~~-----   63 (368)
                      +++||+||||||||+++|.+|++ |++|+|||+++.      +|+.+...   .               . ....     
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~   81 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTG   81 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence            46899999999999999999984 999999999862      33221000   0               0 0000     


Q ss_pred             --cccccceeec------------ccc--cCceeEEEeEEEEeeccE--EEecCC--eEEEecEEEEecCCCCCCCCc--
Q 017664           64 --SFAVRSVINH------------GDY--LSNVKIVVSTAVSITDTE--VVTAGG--QTFVYDYVVVATGHVESVPKS--  121 (368)
Q Consensus        64 --~~~~~~~~~~------------~~~--~~~~~~~~~~~~~~~~~~--v~~~~g--~~~~~d~lvlAtG~~~~~p~~--  121 (368)
                        .+........            ..+  ..+++++...+..++++.  +...++  ..+.||+||+|||+.|..|+.  
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~~~~~  161 (476)
T 3lad_A           82 EVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPPAP  161 (476)
T ss_dssp             CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECCCTTSC
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEcCCCceEEEEcCEEEEcCCCCCCCCCCCC
Confidence              0000000000            000  126788888888888763  445556  579999999999999764432  


Q ss_pred             -hHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEE
Q 017664          122 -RTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVI  200 (368)
Q Consensus       122 -~~~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~  200 (368)
                       ....+.+..........+++++|||+|++|+|+|..+.+  .+.+|+++++.+++++.+++++.+.+.+.+++.||+++
T Consensus       162 ~~~~~v~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~v~  239 (476)
T 3lad_A          162 VDQDVIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWAR--LGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKIL  239 (476)
T ss_dssp             CCSSSEEEHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEE
T ss_pred             CCcccEEechhhhccccCCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCcCcccCHHHHHHHHHHHHhCCCEEE
Confidence             222233333333323457899999999999999999985  48899999999999999999999999999999999999


Q ss_pred             ecceeeecccCCC--eEEcCCC---cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecc
Q 017664          201 LNQSVTLNTISDG--LIETSSG---ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGD  275 (368)
Q Consensus       201 ~~~~v~~i~~~~~--~v~~~~g---~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD  275 (368)
                      +++.|.+++.+++  .+.+.++   +++++|.||+|+|++|+.+++....+++.++++|++.||+++|| +.|||||+||
T Consensus       240 ~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t-~~~~Iya~GD  318 (476)
T 3lad_A          240 LGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYCAT-SVPGVYAIGD  318 (476)
T ss_dssp             ETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCCTTSBC-SSTTEEECGG
T ss_pred             ECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeCCCccc-CCCCEEEEEc
Confidence            9999999987655  4555544   68999999999999999886544444557888999999999998 8999999999


Q ss_pred             cCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCC--CccccccCCCeEEEeecCCccee--------EecCc-----ccc
Q 017664          276 ITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKG--TMATYKPGYPIALVSLGRREGVA--------HFPFL-----TIS  340 (368)
Q Consensus       276 ~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~~--~~~~~~~~~~~~~~~~g~~~~~~--------~~~~~-----~~~  340 (368)
                      |++.+.  +++.|.+||+.||+||.......+..  +...| ..|+++.+|+++++|..        .+++.     .+.
T Consensus       319 ~~~~~~--~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~-~~~~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~  395 (476)
T 3lad_A          319 VVRGAM--LAHKASEEGVVVAERIAGHKAQMNYDLIPAVIY-THPEIAGVGKTEQALKAEGVAINVGVFPFAASGRAMAA  395 (476)
T ss_dssp             GSSSCC--CHHHHHHHHHHHHHHHHHCCCCCCTTCCCEEEC-SSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHH
T ss_pred             cCCCcc--cHHHHHHHHHHHHHHhcCCCcccCCCCCCEEEE-CcCCEEEeeCCHHHHHhcCCCEEEEEEeccccchheec
Confidence            996544  78999999999999998421110000  11122 25788999998876642        22221     123


Q ss_pred             CccceeeeccccchhHHHHHcCCCCC
Q 017664          341 GRIPGWIKSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       341 ~~~~~~~k~~~~~~~~~~~~lG~~~~  366 (368)
                      +...+++|+  ++++++++|||+|+.
T Consensus       396 ~~~~~~~k~--~~~~~~~~ilG~~~~  419 (476)
T 3lad_A          396 NDTAGFVKV--IADAKTDRVLGVHVI  419 (476)
T ss_dssp             TCCCCEEEE--EEETTTCBEEEEEEE
T ss_pred             CCCcEEEEE--EEECCCCEEEEEEEE
Confidence            556789999  999999999999863

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=100.00  E-value=1.7e-43  Score=338.17  Aligned_cols=337  Identities=19%  Similarity=0.245  Sum_probs=245.8

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccceee-----------------------eec----ccccc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLRA-----------------------VVE----PSFAV   67 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~~-----------------------~~~----~~~~~   67 (368)
                      ++||+|||||+||+++|.+|++ |++|+|||+++.+|+.+.....                       .+.    .....
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   81 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVTMDS   81 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCEECH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCH
Confidence            5799999999999999999984 9999999999876643211000                       000    00000


Q ss_pred             cceee------------ccccc--CceeEEEeEEEEeeccE--EEecCC--eEEEecEEEEecCCCCCCCCch---HHHH
Q 017664           68 RSVIN------------HGDYL--SNVKIVVSTAVSITDTE--VVTAGG--QTFVYDYVVVATGHVESVPKSR---TERL  126 (368)
Q Consensus        68 ~~~~~------------~~~~~--~~~~~~~~~~~~~~~~~--v~~~~g--~~~~~d~lvlAtG~~~~~p~~~---~~~~  126 (368)
                      ..+..            ..+++  .+++++...+..++++.  +.+.+|  ..++||+||+|||+.|..|++.   ...+
T Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~p~~~g~~~~~v  161 (468)
T 2qae_A           82 AKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFETAHSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLPFDEKVV  161 (468)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCBTTBCCCSSSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEecCCceEEEEcCEEEECCCCCcCCCCCCCCCcCce
Confidence            00000            01111  26788888877788764  445567  7899999999999987666532   2223


Q ss_pred             HHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHH-HcCCcEEEeccee
Q 017664          127 SQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWL-TSKKVEVILNQSV  205 (368)
Q Consensus       127 ~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l-~~~gv~i~~~~~v  205 (368)
                      .+..........+++++|||+|++|+|+|..+.+  .+.+|+++++.+++++.+++++.+.+.+.+ ++.||+++++++|
T Consensus       162 ~t~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~~gv~i~~~~~v  239 (468)
T 2qae_A          162 LSSTGALALPRVPKTMVVIGGGVIGLELGSVWAR--LGAEVTVVEFAPRCAPTLDEDVTNALVGALAKNEKMKFMTSTKV  239 (468)
T ss_dssp             ECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCCEEECSCEE
T ss_pred             echHHHhhcccCCceEEEECCCHHHHHHHHHHHH--hCCEEEEEecCCcccccCCHHHHHHHHHHHhhcCCcEEEeCCEE
Confidence            3333333322357899999999999999999985  588999999999999999999999999999 9999999999999


Q ss_pred             eecccCCC--eEEcC--CC--cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCC-
Q 017664          206 TLNTISDG--LIETS--SG--ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITD-  278 (368)
Q Consensus       206 ~~i~~~~~--~v~~~--~g--~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~-  278 (368)
                      .+++.+++  .+.+.  +|  +++++|.||+|+|++|+.+++....+++.++++|+|.||+++|| +.|||||+|||++ 
T Consensus       240 ~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t-~~~~IyA~GD~~~~  318 (468)
T 2qae_A          240 VGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFET-SIPDVYAIGDVVDK  318 (468)
T ss_dssp             EEEEECSSSEEEEEECC---EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCTTSBC-SSTTEEECGGGBSS
T ss_pred             EEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECCCccc-CCCCEEEeeccCCC
Confidence            99987654  45544  66  68999999999999999987432223346777899999999998 8999999999998 


Q ss_pred             CCccchHHHHHHHHHHHHHHHHHHHcCCCCCCccccc-------cCCCeEEEeecCCccee--------EecCc-----c
Q 017664          279 IPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYK-------PGYPIALVSLGRREGVA--------HFPFL-----T  338 (368)
Q Consensus       279 ~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~~~~~~~~-------~~~~~~~~~~g~~~~~~--------~~~~~-----~  338 (368)
                      .+  ++++.|.+||+.||+||.    |++..  ..|.       ..|+++.+|+++.++..        .+++.     .
T Consensus       319 ~~--~~~~~A~~~g~~aa~~i~----~~~~~--~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~  390 (468)
T 2qae_A          319 GP--MLAHKAEDEGVACAEILA----GKPGH--VNYGVIPAVIYTMPEVASVGKSEDELKKEGVAYKVGKFPFNANSRAK  390 (468)
T ss_dssp             SC--SCHHHHHHHHHHHHHHHT----TCCCC--CCTTSCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHH
T ss_pred             CC--ccHhHHHHHHHHHHHHHc----CCCcc--CCCCCCCEEEECCCceEEEeCCHHHHHhcCCCEEEEEEecccchhhh
Confidence            43  478999999999999997    33211  1121       24678888887765532        12221     1


Q ss_pred             ccCccceeeeccccchhHHHHHcCCCC
Q 017664          339 ISGRIPGWIKSRDLFVGKTRKQLGLKP  365 (368)
Q Consensus       339 ~~~~~~~~~k~~~~~~~~~~~~lG~~~  365 (368)
                      ..+...+++|+  ++++++++|||+|+
T Consensus       391 ~~~~~~~~~kl--~~~~~~~~ilG~~~  415 (468)
T 2qae_A          391 AVSTEDGFVKV--LVDKATDRILGVHI  415 (468)
T ss_dssp             HTTCCCCEEEE--EEETTTCBEEEEEE
T ss_pred             hcCCCcEEEEE--EEECCCCEEEEEEE
Confidence            34556789999  99999999999986

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=100.00  E-value=9.7e-44  Score=340.71  Aligned_cols=344  Identities=22%  Similarity=0.251  Sum_probs=248.5

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccce------------------eeee-------ccccc
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASL------------------RAVV-------EPSFA   66 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~------------------~~~~-------~~~~~   66 (368)
                      ++.++||+||||||||+++|..|+ .|++|+|||++. +|+.+...                  ....       ...+.
T Consensus        17 ~~~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~-~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~   95 (478)
T 3dk9_A           17 AVASYDYLVIGGGSGGLASARRAAELGARAAVVESHK-LGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFN   95 (478)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCCC
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCccC
Confidence            345689999999999999999998 499999999874 33221100                  0000       00000


Q ss_pred             ccceee------------cccc--cCceeEEEeEEEEeecc--EEEecCCeEEEecEEEEecCCCCCCC---CchHHH-H
Q 017664           67 VRSVIN------------HGDY--LSNVKIVVSTAVSITDT--EVVTAGGQTFVYDYVVVATGHVESVP---KSRTER-L  126 (368)
Q Consensus        67 ~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~--~v~~~~g~~~~~d~lvlAtG~~~~~p---~~~~~~-~  126 (368)
                      ...+..            ....  ..+++++.+.+..+++.  .+. .+++.+.||+||+|||+.|..|   ++++.. .
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~-~~g~~~~~d~lviAtG~~p~~p~~~~i~G~~~~  174 (478)
T 3dk9_A           96 WRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIE-VSGKKYTAPHILIATGGMPSTPHESQIPGASLG  174 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEECSCSSCEEE-ETTEEEECSCEEECCCEEECCCCTTTSTTGGGS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEeeCCeEEEE-ECCEEEEeeEEEEccCCCCCCCCcCCCCCCcee
Confidence            000000            0000  12678888888888764  455 5778899999999999997776   554322 1


Q ss_pred             HHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceee
Q 017664          127 SQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVT  206 (368)
Q Consensus       127 ~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~  206 (368)
                      .+..........+++++|||+|++|+|+|..+.+  .+.+|+++++.+++++.+++++.+.+.+.+++.||++++++.+.
T Consensus       175 ~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~gv~i~~~~~v~  252 (478)
T 3dk9_A          175 ITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSA--LGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVK  252 (478)
T ss_dssp             BCHHHHTTCCSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEEE
T ss_pred             EchHHhhchhhcCccEEEECCCHHHHHHHHHHHH--cCCeEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEE
Confidence            1222222222347899999999999999999985  48899999999999999999999999999999999999999999


Q ss_pred             ecccCCC----eEEcCC-------CcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecc
Q 017664          207 LNTISDG----LIETSS-------GETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGD  275 (368)
Q Consensus       207 ~i~~~~~----~v~~~~-------g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD  275 (368)
                      +++.+++    .+.+.+       |+++++|.||+|+|++|+.+.+....+++.++++|++.||+++|| +.|||||+||
T Consensus       253 ~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyA~GD  331 (478)
T 3dk9_A          253 EVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGD  331 (478)
T ss_dssp             EEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCTTCBC-SSTTEEECGG
T ss_pred             EEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCCCccc-CCCCEEEEEe
Confidence            8876533    355554       267999999999999999885433344457788999999999998 8999999999


Q ss_pred             cCCCCccchHHHHHHHHHHHHHHHHHHHcCCCC----CCccccccCCCeEEEeecCCcceeEe----------cCc----
Q 017664          276 ITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNK----GTMATYKPGYPIALVSLGRREGVAHF----------PFL----  337 (368)
Q Consensus       276 ~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~----------~~~----  337 (368)
                      |++.+  ++++.|.+||+.+|+||+........    .+...| ..|+++.+|+++++|..+.          ++.    
T Consensus       332 ~~~~~--~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~~-~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~  408 (478)
T 3dk9_A          332 VCGKA--LLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVF-SHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYH  408 (478)
T ss_dssp             GGCSS--CCHHHHHHHHHHHHHHHHSCCTTCCCCCTTCCEEEC-CSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCGGG
T ss_pred             cCCCC--ccHhHHHHHHHHHHHHHcCCCCcccCCCCCCCeEEE-CCCceEEeeCCHHHHHhhCCCccEEEEEeecCcchh
Confidence            99654  47899999999999999832100000    001122 2578999999988765321          111    


Q ss_pred             -cccCccceeeeccccchhHHHHHcCCCCC
Q 017664          338 -TISGRIPGWIKSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       338 -~~~~~~~~~~k~~~~~~~~~~~~lG~~~~  366 (368)
                       ...+...+++|+  ++++++++|||+|+.
T Consensus       409 ~~~~~~~~g~~k~--i~~~~~~~ilG~~~~  436 (478)
T 3dk9_A          409 AVTKRKTKCVMKM--VCANKEEKVVGIHMQ  436 (478)
T ss_dssp             GGCSSCCCEEEEE--EEETTTTEEEEEEEE
T ss_pred             hhhcCCCcEEEEE--EEECCCCEEEEEEEE
Confidence             124566899999  999999999999863

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=9.4e-44  Score=342.14  Aligned_cols=336  Identities=19%  Similarity=0.272  Sum_probs=235.6

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccce---e-----------eee------c----ccccccce
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASL---R-----------AVV------E----PSFAVRSV   70 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~---~-----------~~~------~----~~~~~~~~   70 (368)
                      ++||+||||||||+++|.+|+ .|++|+|||+++ +|+.|...   .           ...      .    ..+....+
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   80 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLL   80 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC-cCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccCCccCHHHH
Confidence            489999999999999999997 499999999986 43322100   0           000      0    00000000


Q ss_pred             e------------ecccc--cCceeEEEeEEEEeeccEEEecC-------------CeEEEecEEEEecCCCCCCCCchH
Q 017664           71 I------------NHGDY--LSNVKIVVSTAVSITDTEVVTAG-------------GQTFVYDYVVVATGHVESVPKSRT  123 (368)
Q Consensus        71 ~------------~~~~~--~~~~~~~~~~~~~~~~~~v~~~~-------------g~~~~~d~lvlAtG~~~~~p~~~~  123 (368)
                      .            ....+  ..+++++...+..++++.+...+             +..+.||+||+|||+.|..|++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~id~~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~~p~i~G  160 (500)
T 1onf_A           81 VERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPPVKG  160 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCCSCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeccccccccccCCCceEEEeCEEEECCCCCCCCCCCCC
Confidence            0            00011  12678887777777766665533             567999999999999987776543


Q ss_pred             H-HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEec
Q 017664          124 E-RLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILN  202 (368)
Q Consensus       124 ~-~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~  202 (368)
                      . ...+....... ..+++++|||+|++|+|+|..|.+  .+.+|+++++.+++++.+++++.+.+.+.+++.||+++++
T Consensus       161 ~~~~~~~~~~~~~-~~~~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gv~i~~~  237 (500)
T 1onf_A          161 IENTISSDEFFNI-KESKKIGIVGSGYIAVELINVIKR--LGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTF  237 (500)
T ss_dssp             GGGCEEHHHHTTC-CCCSEEEEECCSHHHHHHHHHHHT--TTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECS
T ss_pred             CCcccCHHHHhcc-CCCCeEEEECChHHHHHHHHHHHH--cCCeEEEEecCCccCcccchhhHHHHHHHHHhCCCEEEEC
Confidence            2 12222222221 127899999999999999999984  5889999999999999999999999999999999999999


Q ss_pred             ceeeecccCC-C--eEEcCCCcE-EecCEEEEccCCCCCchhh--hccccccccCCCCcEEeCCCeeecCCCCeEEeccc
Q 017664          203 QSVTLNTISD-G--LIETSSGET-IDTDCHFMCTGKAMASSWL--RETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDI  276 (368)
Q Consensus       203 ~~v~~i~~~~-~--~v~~~~g~~-i~~d~vi~a~G~~p~~~~~--~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~  276 (368)
                      +.|.+++.++ +  .+.+.+|++ +++|.||+|+|++|+.+.+  ...++  .+ ++|+|.||+++|| +.|+|||+|||
T Consensus       238 ~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~--~~-~~G~i~vd~~~~t-~~~~iya~GD~  313 (500)
T 1onf_A          238 ADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNV--ET-NNNYIVVDENQRT-SVNNIYAVGDC  313 (500)
T ss_dssp             CCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTTTTSSCTTTTC--CB-SSSCEEECTTCBC-SSSSEEECSTT
T ss_pred             CEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCCCCCCchhcCc--cc-cCCEEEECCCccc-CCCCEEEEecc
Confidence            9999987653 3  677888987 9999999999999998644  44444  55 6899999999997 89999999999


Q ss_pred             CCC--------------------------------CccchHHHHHHHHHHHHHHHHHHHcCCCCCCc-------cccccC
Q 017664          277 TDI--------------------------------PEIKQGYLAQKHALVTAKNLKKLMMGRNKGTM-------ATYKPG  317 (368)
Q Consensus       277 ~~~--------------------------------~~~~~~~~a~~~g~~aa~~i~~~l~g~~~~~~-------~~~~~~  317 (368)
                      +..                                ..+.+++.|.+||+.||+||.    |....+.       ..| ..
T Consensus       314 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~----g~~~~~~~~~~~p~~~~-~~  388 (500)
T 1onf_A          314 CMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLF----LKKTRKTNYKLIPTVIF-SH  388 (500)
T ss_dssp             EEEC------------------------------CBCCCCHHHHHHHHHHHHHHHH----SCTTCCCCCSSCCEEEC-CS
T ss_pred             ccccccccccccccccccccccccccccccccccCCcccchhHHHHHHHHHHHHHh----CCCCccCCCCCCCeEEE-cC
Confidence            921                                234578999999999999998    3221110       112 24


Q ss_pred             CCeEEEeecCCcceeEe----------cC--c---c----ccCccceeeeccccchhHHHHHcCCCCC
Q 017664          318 YPIALVSLGRREGVAHF----------PF--L---T----ISGRIPGWIKSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       318 ~~~~~~~~g~~~~~~~~----------~~--~---~----~~~~~~~~~k~~~~~~~~~~~~lG~~~~  366 (368)
                      ++++.+|+++.++..++          ++  .   .    ..+...+++|+  ++++++++|||+|+.
T Consensus       389 ~~~a~vGl~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl--i~~~~~~~ilG~~~~  454 (500)
T 1onf_A          389 PPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKL--VCVGKDELIKGLHII  454 (500)
T ss_dssp             SCEEEEECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEE--EEETTTTEEEEEEEE
T ss_pred             cceEEEeCCHHHHHhcCCCccEEEEEEECchhhhhhccccccCCCceEEEE--EEECCCCEEEEEEEE
Confidence            78899999876654321          01  0   1    12345678998  999999999999863

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=1.4e-42  Score=320.95  Aligned_cols=319  Identities=25%  Similarity=0.349  Sum_probs=230.7

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccceeeeecccccccce-eeccccc--CceeEEEe-EEEEe
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLRAVVEPSFAVRSV-INHGDYL--SNVKIVVS-TAVSI   90 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~-~~~~~   90 (368)
                      ..|++||||||||++||..|++ | +|+|||+++..++....+..........+.+ ....+++  .+++++.. .+..+
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v~~i   86 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLI   86 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEE
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhCCcEEEECCEEEEE
Confidence            4699999999999999999985 8 9999999987654322222222111111111 1112222  25777766 57778


Q ss_pred             ecc--EEEecCCeEEEecEEEEecCCCCCCCCchH-H------HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhh
Q 017664           91 TDT--EVVTAGGQTFVYDYVVVATGHVESVPKSRT-E------RLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVD  161 (368)
Q Consensus        91 ~~~--~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~-~------~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~  161 (368)
                      ++.  .|. .++++++||+||||||++|..|++++ +      .+.+.....+.+..+++++|||+|++|+|+|..+.+ 
T Consensus        87 d~~~~~V~-~~g~~~~~d~lViATGs~p~~p~i~G~~~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~-  164 (367)
T 1xhc_A           87 DRGRKVVI-TEKGEVPYDTLVLATGARAREPQIKGKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAE-  164 (367)
T ss_dssp             ETTTTEEE-ESSCEEECSEEEECCCEEECCCCSBTGGGEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHH-
T ss_pred             ECCCCEEE-ECCcEEECCEEEECCCCCCCCCCCCCcCCEEEEcCHHHHHHHHHHhhcCCcEEEECCCHHHHHHHHHHHh-
Confidence            754  666 67788999999999999977766542 1      123333333333356899999999999999999985 


Q ss_pred             CCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCCcEEecCEEEEccCCCCCchhh
Q 017664          162 FPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWL  241 (368)
Q Consensus       162 ~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~  241 (368)
                       .+.+|+++++.+++++ +++++.+.+.+.+++.||++++++.|.+++.  ..+.+.+|+ +++|.+|+|+|++|+.+++
T Consensus       165 -~g~~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~--~~v~~~~g~-i~~D~vi~a~G~~p~~~ll  239 (367)
T 1xhc_A          165 -AGYHVKLIHRGAMFLG-LDEELSNMIKDMLEETGVKFFLNSELLEANE--EGVLTNSGF-IEGKVKICAIGIVPNVDLA  239 (367)
T ss_dssp             -TTCEEEEECSSSCCTT-CCHHHHHHHHHHHHHTTEEEECSCCEEEECS--SEEEETTEE-EECSCEEEECCEEECCHHH
T ss_pred             -CCCEEEEEeCCCeecc-CCHHHHHHHHHHHHHCCCEEEcCCEEEEEEe--eEEEECCCE-EEcCEEEECcCCCcCHHHH
Confidence             4889999999999888 8899999999999999999999999998873  378888887 9999999999999999887


Q ss_pred             hccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCC--ccchHHHHHHHHHHHHHHHHHHHcCCCC--CCcccc---
Q 017664          242 RETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIP--EIKQGYLAQKHALVTAKNLKKLMMGRNK--GTMATY---  314 (368)
Q Consensus       242 ~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~--~~~~~~~a~~~g~~aa~~i~~~l~g~~~--~~~~~~---  314 (368)
                      +..++  ..+ +| +.||+++|| +.|||||+|||+..+  .+++++.|.+||+.||+||.    |.+.  ....++   
T Consensus       240 ~~~gl--~~~-~g-i~Vd~~~~t-~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~----g~~~~~~~~~~~~~~  310 (367)
T 1xhc_A          240 RRSGI--HTG-RG-ILIDDNFRT-SAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILK----GEPRRYNFKFRSTVF  310 (367)
T ss_dssp             HHTTC--CBS-SS-EECCTTSBC-SSTTEEECGGGEEBTTBCCCSHHHHHHHHHHHHHHHT----TCCCCCCSSCCEEEE
T ss_pred             HhCCC--CCC-CC-EEECCCccc-CCCCEEEeEeeeecCCCCccHHHHHHHHHHHHHHHhc----CCCccCCCCCCceEE
Confidence            76665  444 45 999999998 899999999998542  23578999999999999997    3321  111111   


Q ss_pred             c-cCCCeEEEeecCCcceeEecCccccCccceeeeccccchhHHHHHcCCCC
Q 017664          315 K-PGYPIALVSLGRREGVAHFPFLTISGRIPGWIKSRDLFVGKTRKQLGLKP  365 (368)
Q Consensus       315 ~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~lG~~~  365 (368)
                      . ..++++.+|+.+.++. ++         .+++|+  +++  +++|||+|+
T Consensus       311 ~~~~~~~~~vG~~~~~~~-~~---------~~~~k~--~~~--~~~ilG~~~  348 (367)
T 1xhc_A          311 KFGKLQIAIIGNTKGEGK-WI---------EDNTKV--FYE--NGKIIGAVV  348 (367)
T ss_dssp             EETTEEEEEEECCSSCEE-EE---------ETTEEE--EC-------CEEEE
T ss_pred             EECCceEEEECCCCCCCc-cc---------ceEEEE--EEE--CCEEEEEEE
Confidence            1 2355666666665432 11         578887  776  489999986

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=100.00  E-value=1e-42  Score=341.73  Aligned_cols=344  Identities=19%  Similarity=0.291  Sum_probs=252.7

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHhh-c--CCcEEEEcCCCceeeeccceeeeeccccc--ccceeec-cccc--CceeEE
Q 017664           12 GLVEKKKVVVIGGGVGGSLLAYHIQ-S--FADVVLIDEKEYFEITWASLRAVVEPSFA--VRSVINH-GDYL--SNVKIV   83 (368)
Q Consensus        12 ~~~~~~~vvIIGaG~aGl~aA~~L~-~--g~~v~lie~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~--~~~~~~   83 (368)
                      +.++++||+|||||+||++||.+|+ .  +.+|+|||+++.+++....+.........  ...+... ..+.  .++++.
T Consensus        32 ~~~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~  111 (588)
T 3ics_A           32 DRWGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIR  111 (588)
T ss_dssp             --CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEE
T ss_pred             CcccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEE
Confidence            3345689999999999999999997 3  89999999999887655433332222111  1111111 1111  256653


Q ss_pred             -EeEEEEeec--cEEEec---CCe--EEEecEEEEecCCCCCCCCchH----------HHHHHHHHHHHHH--hcCCeEE
Q 017664           84 -VSTAVSITD--TEVVTA---GGQ--TFVYDYVVVATGHVESVPKSRT----------ERLSQYEKDFEKV--KSANSVL  143 (368)
Q Consensus        84 -~~~~~~~~~--~~v~~~---~g~--~~~~d~lvlAtG~~~~~p~~~~----------~~~~~~~~~~~~~--~~~~~v~  143 (368)
                       ...+..++.  +.+.+.   ++.  .+.||+||+|||+.|..|++++          ..+.+.......+  ..+++++
T Consensus       112 ~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vv  191 (588)
T 3ics_A          112 VLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPSIPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRHAT  191 (588)
T ss_dssp             CSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTTTTCTTEEECSSHHHHHHHHHHHHHHCCSEEE
T ss_pred             ECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCCCCCCCCCCcccCCCeEEeCCHHHHHHHHHHHhhcCCCeEE
Confidence             456777764  355442   454  7899999999999866554332          1223333322222  3589999


Q ss_pred             EEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCCcEE
Q 017664          144 IVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETI  223 (368)
Q Consensus       144 VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~i  223 (368)
                      |||+|++|+|+|..+.+  .+.+|+++++.+++++.+++++.+.+.+.+++.||++++++.|.+++.+++.+.+.+|+++
T Consensus       192 ViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~~~g~~i  269 (588)
T 3ics_A          192 VIGGGFIGVEMVENLRE--RGIEVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVELVFEDGVDALEENGAVVRLKSGSVI  269 (588)
T ss_dssp             EECCSHHHHHHHHHHHH--TTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEGGGTEEEETTSCEE
T ss_pred             EECCCHHHHHHHHHHHh--CCCeEEEEecCCcccccCCHHHHHHHHHHHHHcCCEEEECCeEEEEecCCCEEEECCCCEE
Confidence            99999999999999985  5889999999999999999999999999999999999999999998876557888999999


Q ss_pred             ecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCC--------ccchHHHHHHHHHHH
Q 017664          224 DTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIP--------EIKQGYLAQKHALVT  295 (368)
Q Consensus       224 ~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~--------~~~~~~~a~~~g~~a  295 (368)
                      ++|.||+|+|++|+.+++...++  .++++|++.||+++|| +.|||||+|||+..+        .+++++.|.+||+.+
T Consensus       270 ~~D~Vi~a~G~~p~~~~l~~~g~--~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~a  346 (588)
T 3ics_A          270 QTDMLILAIGVQPESSLAKGAGL--ALGVRGTIKVNEKFQT-SDPHIYAIGDAIEVKDFVTETETMIPLAWPANRQGRML  346 (588)
T ss_dssp             ECSEEEECSCEEECCHHHHHTTC--CBCGGGCBCCCTTSBC-SSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHH
T ss_pred             EcCEEEEccCCCCChHHHHhcCc--eEcCCCCEEECCcccc-CCCCEEEeeeeeecccccCCcccccccHHHHHHHHHHH
Confidence            99999999999999988776665  6788899999999999 899999999998532        135788999999999


Q ss_pred             HHHHHHHHcCCCCC---Ccc--cc-ccCCCeEEEeecCCccee--------EecC----ccccCccceeeeccccchhHH
Q 017664          296 AKNLKKLMMGRNKG---TMA--TY-KPGYPIALVSLGRREGVA--------HFPF----LTISGRIPGWIKSRDLFVGKT  357 (368)
Q Consensus       296 a~~i~~~l~g~~~~---~~~--~~-~~~~~~~~~~~g~~~~~~--------~~~~----~~~~~~~~~~~k~~~~~~~~~  357 (368)
                      |+||...   .+..   ...  .+ ...|+++.+|+++.+|..        .+..    ....+...+++|+  ++++++
T Consensus       347 a~~i~g~---~~~~~~~~~~~~~~~~~~~~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~--i~~~~~  421 (588)
T 3ics_A          347 ADIIHGH---TDSLYKGTLGTSVAKVFDLTVATTGLNEKILKRLNIPYEVVHVQANSHAGYYPNATPVLIKL--IFNKDS  421 (588)
T ss_dssp             HHHHTTC---CSSCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCCEEEEEEEESSCTTSTTCCEEEEEE--EECTTT
T ss_pred             HHHhcCC---CccccCCcccceEEEECCeEEEEecCCHHHHHHcCCCeEEEEEecCCccccCCCCceEEEEE--EEECCC
Confidence            9999731   2210   010  10 125778888988776532        1111    1234556789999  999999


Q ss_pred             HHHcCCCC
Q 017664          358 RKQLGLKP  365 (368)
Q Consensus       358 ~~~lG~~~  365 (368)
                      ++|||+|+
T Consensus       422 ~~ilG~~~  429 (588)
T 3ics_A          422 GKIYGAQT  429 (588)
T ss_dssp             CBEEEEEE
T ss_pred             CeEEEEEE
Confidence            99999986

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=100.00  E-value=3.6e-43  Score=336.38  Aligned_cols=336  Identities=21%  Similarity=0.253  Sum_probs=246.3

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeecccee--------------------ee----ec---cccc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLR--------------------AV----VE---PSFA   66 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~--------------------~~----~~---~~~~   66 (368)
                      .++||+||||||||+++|.+|++ |++|+|||+++.+|+.|....                    ..    ..   ..+.
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~   84 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEVRLN   84 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCEEEC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCCccC
Confidence            45899999999999999999984 999999999987664431100                    00    00   0000


Q ss_pred             ccceee------------ccccc--CceeEEEeEEEEeeccE--EEecC-C-eEEEecEEEEecCCCCCCCCch---HHH
Q 017664           67 VRSVIN------------HGDYL--SNVKIVVSTAVSITDTE--VVTAG-G-QTFVYDYVVVATGHVESVPKSR---TER  125 (368)
Q Consensus        67 ~~~~~~------------~~~~~--~~~~~~~~~~~~~~~~~--v~~~~-g-~~~~~d~lvlAtG~~~~~p~~~---~~~  125 (368)
                      ...+..            ..+++  .+++++...+..++++.  +.+.+ + +.++||+||+|||+.|..|+++   ...
T Consensus        85 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~p~i~g~~~~~  164 (474)
T 1zmd_A           85 LDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDEDT  164 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECCCTTCCCCSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEecCCCcEEEEeCEEEECCCCCCCCCCCCCCCcCc
Confidence            000000            01111  26788888887777764  44445 4 5799999999999997665532   222


Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc-ccCchhHHHHHHHHHcCCcEEEecce
Q 017664          126 LSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE-FVGSRASQIALDWLTSKKVEVILNQS  204 (368)
Q Consensus       126 ~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~  204 (368)
                      +.+..........+++++|||+|++|+|+|..+.+  .+.+|+++++.+++++ .+++++...+.+.+++.||++++++.
T Consensus       165 v~t~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~  242 (474)
T 1zmd_A          165 IVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQR--LGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTK  242 (474)
T ss_dssp             EECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSCSSCCHHHHHHHHHHHHHTTCEEECSEE
T ss_pred             EEcHHHHhhccccCceEEEECCCHHHHHHHHHHHH--cCCEEEEEeccCccCCcccCHHHHHHHHHHHHHCCCEEEeCce
Confidence            22333322222347899999999999999999985  4889999999999998 88999999999999999999999999


Q ss_pred             eeecccCCC---eEE-----cCCCcEEecCEEEEccCCCCCchh--hhccccccccCCCCcEEeCCCeeecCCCCeEEec
Q 017664          205 VTLNTISDG---LIE-----TSSGETIDTDCHFMCTGKAMASSW--LRETILKDSLDGRGRLMVDENLRVRGFKNVFAIG  274 (368)
Q Consensus       205 v~~i~~~~~---~v~-----~~~g~~i~~d~vi~a~G~~p~~~~--~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~G  274 (368)
                      |.+++.+++   .+.     ..+++++++|.||+|+|++|+.++  +...++  .++++|+|.||+++|| +.|+|||+|
T Consensus       243 v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~--~~~~~G~i~vd~~~~t-~~~~IyA~G  319 (474)
T 1zmd_A          243 VTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGI--ELDPRGRIPVNTRFQT-KIPNIYAIG  319 (474)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTC--CCCTTSCCCCCTTCBC-SSTTEEECG
T ss_pred             EEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCC--ccCCCCCEEECcCCcc-CCCCEEEee
Confidence            999986653   333     356678999999999999999887  444444  6778899999999998 899999999


Q ss_pred             ccCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCccccc-------cCCCeEEEeecCCccee--------EecCc--
Q 017664          275 DITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYK-------PGYPIALVSLGRREGVA--------HFPFL--  337 (368)
Q Consensus       275 D~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~~~~~~~~-------~~~~~~~~~~g~~~~~~--------~~~~~--  337 (368)
                      ||++.+  ++++.|.+||+.||+||.    |++. + ..|.       ..|+++.+|+.+.++..        .+++.  
T Consensus       320 D~~~~~--~~~~~A~~~g~~aa~~i~----~~~~-~-~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~  391 (474)
T 1zmd_A          320 DVVAGP--MLAHKAEDEGIICVEGMA----GGAV-H-IDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGKFPFAAN  391 (474)
T ss_dssp             GGSSSC--CCHHHHHHHHHHHHHHHT----TCCC-C-CCGGGCCEEECSSSEEEEEECCHHHHHHHTCCEEEEEEEGGGC
T ss_pred             ecCCCC--ccHHHHHHHHHHHHHHhc----CCCC-c-CCCCCCCEEEECCCCeEEEeCCHHHHHhcCCCEEEEEEecccc
Confidence            999764  378899999999999997    3321 1 1221       25778888887766532        12221  


Q ss_pred             ---cccCccceeeeccccchhHHHHHcCCCC
Q 017664          338 ---TISGRIPGWIKSRDLFVGKTRKQLGLKP  365 (368)
Q Consensus       338 ---~~~~~~~~~~k~~~~~~~~~~~~lG~~~  365 (368)
                         ...+...+++|+  ++++++++|||+|+
T Consensus       392 ~~~~~~~~~~~~~k~--~~~~~~~~ilG~~~  420 (474)
T 1zmd_A          392 SRAKTNADTDGMVKI--LGQKSTDRVLGAHI  420 (474)
T ss_dssp             HHHHHTTCCCCEEEE--EEETTTCBEEEEEE
T ss_pred             hhhhhcCCCcEEEEE--EEECCCCEEEEEEE
Confidence               134556789999  99999999999986

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=100.00  E-value=5.4e-43  Score=334.58  Aligned_cols=342  Identities=19%  Similarity=0.247  Sum_probs=246.4

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccce---------------------eee--e---cccc
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASL---------------------RAV--V---EPSF   65 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~---------------------~~~--~---~~~~   65 (368)
                      |+.++||+|||||++|+++|.+|+ .|++|+|||+++ +|..|...                     ...  +   ....
T Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~-~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~   79 (467)
T 1zk7_A            1 MEPPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERGT-IGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTI   79 (467)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-TTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCCC
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC-CCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCcc
Confidence            456789999999999999999998 499999999984 44322100                     000  0   0000


Q ss_pred             cccce-----------e--eccccc---CceeEEEeEEEEeeccE--EEecCC--eEEEecEEEEecCCCCCCCCchH--
Q 017664           66 AVRSV-----------I--NHGDYL---SNVKIVVSTAVSITDTE--VVTAGG--QTFVYDYVVVATGHVESVPKSRT--  123 (368)
Q Consensus        66 ~~~~~-----------~--~~~~~~---~~~~~~~~~~~~~~~~~--v~~~~g--~~~~~d~lvlAtG~~~~~p~~~~--  123 (368)
                      ....+           .  ...+++   .+++++.+++..++++.  +.+.+|  ..++||+||+|||+.|..|++++  
T Consensus        80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~G~~  159 (467)
T 1zk7_A           80 DRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIPGLK  159 (467)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEEEEEEETTEEEEEETTSSEEEEECSEEEECCCEEECCCCCTTTT
T ss_pred             CHHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEEEEEccCCEEEEEeCCCceEEEEeCEEEEeCCCCCCCCCCCCCC
Confidence            00000           0  011122   27888888888888764  455677  78999999999999876665432  


Q ss_pred             -HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEec
Q 017664          124 -ERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILN  202 (368)
Q Consensus       124 -~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~  202 (368)
                       ..+.+.....+....+++++|||+|++|+|+|..+.+  .+.+|+++++.+++++ +++++.+.+.+.+++.||+++++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~~Gv~i~~~  236 (467)
T 1zk7_A          160 ESPYWTSTEALASDTIPERLAVIGSSVVALELAQAFAR--LGSKVTVLARNTLFFR-EDPAIGEAVTAAFRAEGIEVLEH  236 (467)
T ss_dssp             TSCCBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCTTTT-SCHHHHHHHHHHHHHTTCEEETT
T ss_pred             cCceecHHHHhcccccCCEEEEECCCHHHHHHHHHHHH--cCCEEEEEEECCccCC-CCHHHHHHHHHHHHhCCCEEEcC
Confidence             1222333333333457999999999999999999985  4889999999999998 89999999999999999999999


Q ss_pred             ceeeecccCCC--eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCC
Q 017664          203 QSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIP  280 (368)
Q Consensus       203 ~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~  280 (368)
                      +.|.+++.+++  .+.++ +.++++|.||+|+|.+|+.+++....+++.++++|+|.||+++|+ +.|+|||+|||+..+
T Consensus       237 ~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t-~~~~iya~GD~~~~~  314 (467)
T 1zk7_A          237 TQASQVAHMDGEFVLTTT-HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRT-SNPNIYAAGDCTDQP  314 (467)
T ss_dssp             CCEEEEEEETTEEEEEET-TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBC-SSTTEEECSTTBSSC
T ss_pred             CEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECCCccc-CCCCEEEEeccCCCc
Confidence            99999876554  45665 458999999999999999876432333446778899999999998 899999999999865


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHcCCCC-CCcc--ccccCCCeEEEeecCCccee--------EecCcc-----ccCccc
Q 017664          281 EIKQGYLAQKHALVTAKNLKKLMMGRNK-GTMA--TYKPGYPIALVSLGRREGVA--------HFPFLT-----ISGRIP  344 (368)
Q Consensus       281 ~~~~~~~a~~~g~~aa~~i~~~l~g~~~-~~~~--~~~~~~~~~~~~~g~~~~~~--------~~~~~~-----~~~~~~  344 (368)
                      .  +++.|.+||+.+|.||... ..... ...+  .| ..+.++.+|+.+.++..        .+++..     ..+...
T Consensus       315 ~--~~~~A~~~g~~aa~~i~~~-~~~~~~~~~p~~~~-~~~~~a~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~  390 (467)
T 1zk7_A          315 Q--FVYVAAAAGTRAAINMTGG-DAALDLTAMPAVVF-TDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTR  390 (467)
T ss_dssp             C--CHHHHHHHHHHHHHHHTTC-CCCCCCTTCEEEEC-SSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCC
T ss_pred             c--cHHHHHHHHHHHHHHHcCC-CcccCCCCCCEEEe-cCCceEEEecCHHHHHhcCCCeEEEEEecccchhhhhcCCCc
Confidence            4  6889999999999999731 10000 0111  12 24677888877655421        122211     234557


Q ss_pred             eeeeccccchhHHHHHcCCCCC
Q 017664          345 GWIKSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       345 ~~~k~~~~~~~~~~~~lG~~~~  366 (368)
                      +++|+  ++++++++|||+|+.
T Consensus       391 ~~~kl--~~~~~~~~ilG~~~~  410 (467)
T 1zk7_A          391 GFIKL--VIEEGSHRLIGVQAV  410 (467)
T ss_dssp             CEEEE--EEETTTCBEEEEEEE
T ss_pred             EEEEE--EEECCCCEEEEEEEE
Confidence            89998  999999999999863

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=100.00  E-value=1.7e-42  Score=329.82  Aligned_cols=335  Identities=18%  Similarity=0.224  Sum_probs=243.9

Q ss_pred             CcEEEECCChHHHHHHHHhh-c--CCcEEEEcCCCceeeeccceeeeecccc----cccceeeccccc--CceeEEEe-E
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-S--FADVVLIDEKEYFEITWASLRAVVEPSF----AVRSVINHGDYL--SNVKIVVS-T   86 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~--g~~v~lie~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~-~   86 (368)
                      +||+|||||+||+++|.+|+ .  |.+|+|||+++.+++....+........    ..+......+++  .+++++.. .
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~   80 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRHQ   80 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGHHHHHTTCBGGGCGGGGBSCCHHHHHHTTCEEEESEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccchhhhcCCcccCCHHHhhhcCHHHHHHcCCEEEeCCE
Confidence            58999999999999999997 3  9999999999876554332221111110    111111111111  25677444 5


Q ss_pred             EEEee--ccEEEecC-----CeEEEecEEEEecCCCCCCCCchH---H------HHHHHHHHHHHHhcCCeEEEEcCchh
Q 017664           87 AVSIT--DTEVVTAG-----GQTFVYDYVVVATGHVESVPKSRT---E------RLSQYEKDFEKVKSANSVLIVGGGPT  150 (368)
Q Consensus        87 ~~~~~--~~~v~~~~-----g~~~~~d~lvlAtG~~~~~p~~~~---~------~~~~~~~~~~~~~~~~~v~VvG~g~~  150 (368)
                      +..++  .+.+.+.+     +..++||+||+|||++|..|++++   .      .+.+.....+....+++++|||+|++
T Consensus        81 v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~  160 (452)
T 2cdu_A           81 VTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYI  160 (452)
T ss_dssp             EEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTTTSTTEEECSSHHHHHHHHHHGGGCSEEEEECCSHH
T ss_pred             EEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcCCCCCCCCCCCCEEEeCcHHHHHHHHHHhccCCeEEEECcCHH
Confidence            67776  44665543     467999999999999976665432   1      23344445555567899999999999


Q ss_pred             HHHHHHHHhhhCCCCeEEEEecCccccc-ccCchhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCCcEEecC
Q 017664          151 GVELAGEIAVDFPDKKVILVHRGPKLLE-FVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSGETIDTD  226 (368)
Q Consensus       151 ~~e~a~~l~~~~~~~~v~~i~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d  226 (368)
                      |+|+|..+.+  .+.+|+++++.+++++ .+++++.+.+.+.+++.||++++++.|.+++.+++   .+.+ +|+++++|
T Consensus       161 g~E~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~-~g~~i~~D  237 (452)
T 2cdu_A          161 GAELAEAYSN--QNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTL-DGKEIKSD  237 (452)
T ss_dssp             HHHHHHHHHT--TTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEESSCEEEEEEETTEEEEEET-TSCEEEES
T ss_pred             HHHHHHHHHh--cCCEEEEEEcCCchhhhhhhhhHHHHHHHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEe-CCCEEECC
Confidence            9999999984  5889999999999988 78999999999999999999999999999886444   2444 77899999


Q ss_pred             EEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCc--------cchHHHHHHHHHHHHHH
Q 017664          227 CHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPE--------IKQGYLAQKHALVTAKN  298 (368)
Q Consensus       227 ~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~--------~~~~~~a~~~g~~aa~~  298 (368)
                      .||+|+|++|+.+++... +  .++++|+|.||+++|| +.|||||+|||+..+.        +.+++.|.+||+.||+|
T Consensus       238 ~vv~a~G~~p~~~ll~~~-l--~~~~~G~i~Vd~~~~t-~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~  313 (452)
T 2cdu_A          238 IAILCIGFRPNTELLKGK-V--AMLDNGAIITDEYMHS-SNRDIFAAGDSAAVHYNPTNSNAYIPLATNAVRQGRLVGLN  313 (452)
T ss_dssp             EEEECCCEEECCGGGTTT-S--CBCTTSCBCCCTTSBC-SSTTEEECSTTBCEEETTTTEEECCCCHHHHHHHHHHHHHT
T ss_pred             EEEECcCCCCCHHHHHHh-h--hcCCCCCEEECCCcCc-CCCCEEEcceEEEeccccCCCeeecchHHHHHHHHHHHHHH
Confidence            999999999999887654 4  6778899999999999 8999999999998532        25789999999999999


Q ss_pred             HHHHHcCCCCCCcccc-----c--cCCCeEEEeecCCcceeE--------ec---Cccc-cCccceeeeccccchhHHHH
Q 017664          299 LKKLMMGRNKGTMATY-----K--PGYPIALVSLGRREGVAH--------FP---FLTI-SGRIPGWIKSRDLFVGKTRK  359 (368)
Q Consensus       299 i~~~l~g~~~~~~~~~-----~--~~~~~~~~~~g~~~~~~~--------~~---~~~~-~~~~~~~~k~~~~~~~~~~~  359 (368)
                      |.    |.+.. ...+     .  ..++++.+|+.+.++...        +.   ...+ .+...+++|+  ++++++++
T Consensus       314 i~----g~~~~-~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~--~~~~~~~~  386 (452)
T 2cdu_A          314 LT----EDKVK-DMGTQSSSGLKLYGRTYVSTGINTALAKANNLKVSEVIIADNYRPEFMLSTDEVLMSL--VYDPKTRV  386 (452)
T ss_dssp             SS----SCCCC-CCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCCEEEEEEEESSCTTBSCCCEEEEEE--EECTTTCB
T ss_pred             hC----CCCCc-CCCccceEEEEECCeeeEeecCCHHHHHHcCCceEEEEEecCCccccCCCCceEEEEE--EEECCCCE
Confidence            97    33211 1111     0  135677777766544321        11   1111 2444688998  99999999


Q ss_pred             HcCCCC
Q 017664          360 QLGLKP  365 (368)
Q Consensus       360 ~lG~~~  365 (368)
                      |||+|+
T Consensus       387 ilG~~~  392 (452)
T 2cdu_A          387 ILGGAL  392 (452)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999986

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=100.00  E-value=7.1e-43  Score=337.18  Aligned_cols=344  Identities=15%  Similarity=0.156  Sum_probs=243.8

Q ss_pred             cCCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC--------ceeeeccce---e---------------ee---
Q 017664           11 AGLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE--------YFEITWASL---R---------------AV---   60 (368)
Q Consensus        11 ~~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~--------~~~~~~~~~---~---------------~~---   60 (368)
                      ++++.++||+||||||||++||.+|+ .|.+|+|||+++        .+|+.+...   .               ..   
T Consensus        27 ~~~~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~  106 (519)
T 3qfa_A           27 LPKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNY  106 (519)
T ss_dssp             CCSSCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCcCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhc
Confidence            44556789999999999999999998 599999999964        344322110   0               00   


Q ss_pred             -e----cccccccceeecc------------c--ccCceeEEEeEEEEeeccEEE--ecCCe--EEEecEEEEecCCCCC
Q 017664           61 -V----EPSFAVRSVINHG------------D--YLSNVKIVVSTAVSITDTEVV--TAGGQ--TFVYDYVVVATGHVES  117 (368)
Q Consensus        61 -~----~~~~~~~~~~~~~------------~--~~~~~~~~~~~~~~~~~~~v~--~~~g~--~~~~d~lvlAtG~~~~  117 (368)
                       .    ...+....+..+.            .  ...+++++.+.+..++++.+.  +.+|.  .++||+||||||+.|.
T Consensus       107 g~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs~p~  186 (519)
T 3qfa_A          107 GWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPR  186 (519)
T ss_dssp             TBCCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCCCEEEEEEEEECCCEEEC
T ss_pred             CcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEcCCCCEEEEECCEEEEECCCCcC
Confidence             0    0000000000000            0  013688899999999987554  34453  7999999999999988


Q ss_pred             CCCchHHH--HHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcC
Q 017664          118 VPKSRTER--LSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSK  195 (368)
Q Consensus       118 ~p~~~~~~--~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~  195 (368)
                      .|++++..  +.+..........+++++|||+|++|+|+|..+.+  .+.+|+++++. .+++.+++++.+.+.+.+++.
T Consensus       187 ~p~i~G~~~~~~t~~~~~~l~~~~~~vvVIGgG~ig~E~A~~l~~--~G~~Vtlv~~~-~~l~~~d~~~~~~~~~~l~~~  263 (519)
T 3qfa_A          187 YLGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAG--IGLDVTVMVRS-ILLRGFDQDMANKIGEHMEEH  263 (519)
T ss_dssp             CCCCTTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESS-CSSTTSCHHHHHHHHHHHHHT
T ss_pred             CCCCCCccCceEcHHHHhhhhhcCCeEEEECCcHHHHHHHHHHHH--cCCeEEEEecc-cccccCCHHHHHHHHHHHHHC
Confidence            87765422  11222222222347889999999999999999986  48899999985 688888999999999999999


Q ss_pred             CcEEEecceeeecccCC----C--eE--EcCCC-c--EEecCEEEEccCCCCCchhhhccccccccC-CCCcEEeCCCee
Q 017664          196 KVEVILNQSVTLNTISD----G--LI--ETSSG-E--TIDTDCHFMCTGKAMASSWLRETILKDSLD-GRGRLMVDENLR  263 (368)
Q Consensus       196 gv~i~~~~~v~~i~~~~----~--~v--~~~~g-~--~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~-~~g~i~vd~~~~  263 (368)
                      ||++++++.+.+++..+    +  .+  ...+| +  ++++|.|++|+|++|+.+++....+++.++ ++|+|.||+++|
T Consensus       264 GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~I~Vd~~~~  343 (519)
T 3qfa_A          264 GIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQ  343 (519)
T ss_dssp             TCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTTTCCBCCCTTSB
T ss_pred             CCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcCCCCeEeeCCCCc
Confidence            99999998777665321    2  22  33455 2  578999999999999998754444455777 579999999999


Q ss_pred             ecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCC-------ccccccCCCeEEEeecCCcceeEe--
Q 017664          264 VRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGT-------MATYKPGYPIALVSLGRREGVAHF--  334 (368)
Q Consensus       264 ~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~--  334 (368)
                      | +.|||||+|||+.. .+++++.|.+||+.||+||+    |.....       ...| ..|+++.+|+++++|...+  
T Consensus       344 T-s~~~IyA~GD~~~g-~~~~~~~A~~~g~~aa~~i~----g~~~~~~~~~~~p~~~~-~~p~~a~vGlte~~a~~~~~~  416 (519)
T 3qfa_A          344 T-NVPYIYAIGDILED-KVELTPVAIQAGRLLAQRLY----AGSTVKCDYENVPTTVF-TPLEYGACGLSEEKAVEKFGE  416 (519)
T ss_dssp             C-SSTTEEECGGGBSS-SCCCHHHHHHHHHHHHHHHH----SCCCCCCCCTTCCEEEC-SSSCEEEEECCHHHHHHHHCG
T ss_pred             c-CCCCEEEEEeccCC-CCccHHHHHHHHHHHHHHHc----CCCCccCCCCcCcEEEE-CCCceEEecCCHHHHHhhCCC
Confidence            8 89999999999842 24478999999999999998    332111       1112 2588999999988775321  


Q ss_pred             --------cCcc----c--cCccceeeeccccchh-HHHHHcCCCCC
Q 017664          335 --------PFLT----I--SGRIPGWIKSRDLFVG-KTRKQLGLKPT  366 (368)
Q Consensus       335 --------~~~~----~--~~~~~~~~k~~~~~~~-~~~~~lG~~~~  366 (368)
                              .+..    .  .+...+++|+  ++++ ++++|||+|+.
T Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~g~~Kl--i~~~~~~~~ilGa~i~  461 (519)
T 3qfa_A          417 ENIEVYHSYFWPLEWTIPSRDNNKCYAKI--ICNTKDNERVVGFHVL  461 (519)
T ss_dssp             GGEEEEEEEECCHHHHTTTCCTTTEEEEE--EEETTTTCEEEEEEEE
T ss_pred             CCEEEEEEeccchhhhhhccCCCcEEEEE--EEecCCCCEEEEEEEE
Confidence                    1111    1  1235789998  9997 58999999863

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=3.8e-43  Score=334.51  Aligned_cols=337  Identities=21%  Similarity=0.275  Sum_probs=243.8

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccce------------------ee----ee---cccccccc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASL------------------RA----VV---EPSFAVRS   69 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~------------------~~----~~---~~~~~~~~   69 (368)
                      ++||+|||||+||+++|.+|+ .|++|+|||++ .+++.+...                  ..    ..   ........
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   81 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAK   81 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccCHHH
Confidence            579999999999999999998 49999999998 444322100                  00    00   00000000


Q ss_pred             eee------------cccc--cCceeEEEeEEEEeeccE--EEecCC-eEEEecEEEEecCCCCCCCCchH--HHHHHHH
Q 017664           70 VIN------------HGDY--LSNVKIVVSTAVSITDTE--VVTAGG-QTFVYDYVVVATGHVESVPKSRT--ERLSQYE  130 (368)
Q Consensus        70 ~~~------------~~~~--~~~~~~~~~~~~~~~~~~--v~~~~g-~~~~~d~lvlAtG~~~~~p~~~~--~~~~~~~  130 (368)
                      +..            ..++  ..+++++.+.+..++++.  +.+.++ ..++||+||+|||+.|..|++..  ..+.+..
T Consensus        82 ~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~i~~d~lViATGs~p~~~~~~g~~~~v~~~~  161 (455)
T 1ebd_A           82 VQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELPNFKFSNRILDST  161 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEECSEEEECCCEEECCBTTBCCCSSEECHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCcEEEEeCEEEEecCCCCCCCCCCCccceEecHH
Confidence            000            0011  126788888877777764  445566 67999999999999976665321  1122233


Q ss_pred             HHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeeccc
Q 017664          131 KDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTI  210 (368)
Q Consensus       131 ~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~  210 (368)
                      ........+++++|||+|++|+|+|..+.+  .+.+|+++++.+++++.+++++...+.+.+++.||++++++.|.+++.
T Consensus       162 ~~~~~~~~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~  239 (455)
T 1ebd_A          162 GALNLGEVPKSLVVIGGGYIGIELGTAYAN--FGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEE  239 (455)
T ss_dssp             HHHTCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEEE
T ss_pred             HHhccccCCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEE
Confidence            322222347999999999999999999985  488999999999999988999999999999999999999999999886


Q ss_pred             CCC--eEEcC---CCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchH
Q 017664          211 SDG--LIETS---SGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQG  285 (368)
Q Consensus       211 ~~~--~v~~~---~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~  285 (368)
                      +++  .+.+.   +++++++|.+|+|+|++|+.+++....+++.++++|+|.||+++|| +.|+|||+|||++.+  +++
T Consensus       240 ~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t-~~~~Iya~GD~~~~~--~~~  316 (455)
T 1ebd_A          240 REDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRT-SVPNIFAIGDIVPGP--ALA  316 (455)
T ss_dssp             ETTEEEEEEEETTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCTTCBC-SSTTEEECGGGSSSC--CCH
T ss_pred             eCCeEEEEEEeCCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCCCccc-CCCCEEEEeccCCCc--ccH
Confidence            554  34443   4568999999999999999887432333446778899999999998 899999999999764  378


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCccccc-------cCCCeEEEeecCCccee--------EecCc-----cccCccce
Q 017664          286 YLAQKHALVTAKNLKKLMMGRNKGTMATYK-------PGYPIALVSLGRREGVA--------HFPFL-----TISGRIPG  345 (368)
Q Consensus       286 ~~a~~~g~~aa~~i~~~l~g~~~~~~~~~~-------~~~~~~~~~~g~~~~~~--------~~~~~-----~~~~~~~~  345 (368)
                      +.|.+||+.||+||.    |++..  ..|.       ..|+++.+|+++.++..        .+++.     ...+...+
T Consensus       317 ~~A~~~g~~aa~~i~----~~~~~--~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~  390 (455)
T 1ebd_A          317 HKASYEGKVAAEAIA----GHPSA--VDYVAIPAVVFSDPECASVGYFEQQAKDEGIDVIAAKFPFAANGRALALNDTDG  390 (455)
T ss_dssp             HHHHHHHHHHHHHHT----SCCCC--CCCSCCCEEECSSSCEEEEECCHHHHHTTTCCEEEEEEEGGGCHHHHHHTCCCC
T ss_pred             HHHHHHHHHHHHHHc----CCCcc--CCCCCCCEEEECCCceEEEeCCHHHHHhcCCCEEEEEEEcCcchHHhhcCCCcE
Confidence            899999999999997    33211  1121       24778888888765532        12221     12355678


Q ss_pred             eeeccccchhHHHHHcCCCCC
Q 017664          346 WIKSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       346 ~~k~~~~~~~~~~~~lG~~~~  366 (368)
                      ++|+  ++++++++|||+|+.
T Consensus       391 ~~k~--~~~~~~~~ilG~~~~  409 (455)
T 1ebd_A          391 FLKL--VVRKEDGVIIGAQII  409 (455)
T ss_dssp             EEEE--EEETTTTEEEEEEEE
T ss_pred             EEEE--EEECCCCEEEEEEEe
Confidence            9998  999999999999863

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=100.00  E-value=4.5e-42  Score=335.98  Aligned_cols=338  Identities=19%  Similarity=0.273  Sum_probs=247.7

Q ss_pred             CcEEEECCChHHHHHHHHhhc---CCcEEEEcCCCceeeeccceeeeeccccc--ccceeeccccc---CceeEE-EeEE
Q 017664           17 KKVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYFEITWASLRAVVEPSFA--VRSVINHGDYL---SNVKIV-VSTA   87 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~-~~~~   87 (368)
                      +||+|||||+||++||.+|++   +++|+|||+++.+++....+.........  ...+....+++   .++++. ..++
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V   81 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHEV   81 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTSSSCCGGGGBCCCHHHHHHHHCCEEETTEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcCCcCChHHhhccCHHHHHHhcCcEEEECCEE
Confidence            689999999999999999973   89999999999887654433332222111  11111111111   156653 4677


Q ss_pred             EEeecc--EEEecC---C--eEEEecEEEEecCCCCCCCCchH---------HHHHHHHHHHHH--HhcCCeEEEEcCch
Q 017664           88 VSITDT--EVVTAG---G--QTFVYDYVVVATGHVESVPKSRT---------ERLSQYEKDFEK--VKSANSVLIVGGGP  149 (368)
Q Consensus        88 ~~~~~~--~v~~~~---g--~~~~~d~lvlAtG~~~~~p~~~~---------~~~~~~~~~~~~--~~~~~~v~VvG~g~  149 (368)
                      ..++..  .+.+.+   +  ..+.||+||+|||+.|..|++++         ..+.+.....+.  ...+++++|||+|+
T Consensus        82 ~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~ipG~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~  161 (565)
T 3ntd_A           82 VAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGF  161 (565)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTCCSTTEECCSSHHHHHHHHHHHHHTTCSEEEEECCSH
T ss_pred             EEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCCCCCCCCCCCCCEEEeCCHHHHHHHHHHHhhCCCCEEEEECCCH
Confidence            777743  454432   4  37899999999999866554321         122333333222  23478999999999


Q ss_pred             hHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeeccc-------------------
Q 017664          150 TGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTI-------------------  210 (368)
Q Consensus       150 ~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~-------------------  210 (368)
                      +|+|+|..+.+  .+.+|+++++.+++++.+++++...+.+.+++.||++++++.+.+++.                   
T Consensus       162 ~g~e~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~  239 (565)
T 3ntd_A          162 IGLEMMESLHH--LGIKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQH  239 (565)
T ss_dssp             HHHHHHHHHHH--TTCEEEEEESSSSSCTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCC
T ss_pred             HHHHHHHHHHh--cCCcEEEEEcCCccchhcCHHHHHHHHHHHHHCCCEEEeCCeEEEEecccccccccccccccccccc
Confidence            99999999985  488999999999999989999999999999999999999999998876                   


Q ss_pred             CCC--eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCC--------
Q 017664          211 SDG--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIP--------  280 (368)
Q Consensus       211 ~~~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~--------  280 (368)
                      .++  .+.+.+|+++++|.||+|+|++|+.+++...++  .++++|++.||+++|| +.|||||+|||+..+        
T Consensus       240 ~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~g~--~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~~~~g~~~  316 (565)
T 3ntd_A          240 IKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGL--AIGELGGIKVNAMMQT-SDPAIYAVGDAVEEQDFVTGQAC  316 (565)
T ss_dssp             TTCEEEEEETTSCEEEESEEEECSCEEECCHHHHHHTC--CBCTTSSBCCCTTCBC-SSTTEEECGGGBCEEBTTTCCEE
T ss_pred             CCCcEEEEEcCCCEEEcCEEEECcCCccchHHHHhCCc--ccCCCCCEEECCCccc-CCCCEEEeeeeEeeccccCCcee
Confidence            233  567788889999999999999999888766555  6788899999999998 899999999998432        


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHcCCCCCC---cccc---ccCCCeEEEeecCCcceeE--------ec---Cccc-cCc
Q 017664          281 EIKQGYLAQKHALVTAKNLKKLMMGRNKGT---MATY---KPGYPIALVSLGRREGVAH--------FP---FLTI-SGR  342 (368)
Q Consensus       281 ~~~~~~~a~~~g~~aa~~i~~~l~g~~~~~---~~~~---~~~~~~~~~~~g~~~~~~~--------~~---~~~~-~~~  342 (368)
                      .+++++.|.+||+.||+||.    |++...   ...+   ...++++.+|+.+.+|...        +.   ...+ .+.
T Consensus       317 ~~~~~~~A~~~g~~aa~~i~----g~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~  392 (565)
T 3ntd_A          317 LVPLAGPANRQGRMAADNMF----GREERYQGTQGTAICKVFDLAVGATGKNEKQLKQAGIAFEKVYVHTASHASYYPGA  392 (565)
T ss_dssp             CCCCHHHHHHHHHHHHHHHT----TCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCCEEEEEEEESSCTTSTTC
T ss_pred             ecccHHHHHHHHHHHHHHhc----CCCccCCCcccceEEEEcCcEEEEecCCHHHHHHcCCCeEEEEEecCcccCcCCCC
Confidence            12468899999999999998    432211   0000   1246788888887765321        11   1112 366


Q ss_pred             cceeeeccccchhHHHHHcCCCC
Q 017664          343 IPGWIKSRDLFVGKTRKQLGLKP  365 (368)
Q Consensus       343 ~~~~~k~~~~~~~~~~~~lG~~~  365 (368)
                      ..+++|+  ++++++++|||+|+
T Consensus       393 ~~~~~k~--v~~~~~~~ilG~~~  413 (565)
T 3ntd_A          393 EVVSFKL--LFDPVKGTIFGAQA  413 (565)
T ss_dssp             CEEEEEE--EECTTTCBEEEEEE
T ss_pred             ceEEEEE--EEECCCCEEEEEEE
Confidence            6789999  99999999999986

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=5.2e-43  Score=335.14  Aligned_cols=339  Identities=18%  Similarity=0.263  Sum_probs=246.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccceee-----------------------ee---ccccc
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLRA-----------------------VV---EPSFA   66 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~~-----------------------~~---~~~~~   66 (368)
                      +.++||+||||||||+++|.+|++ |++|+|||+++.+|+.+.....                       ..   .....
T Consensus         4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~   83 (470)
T 1dxl_A            4 SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEID   83 (470)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEEC
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCccC
Confidence            456899999999999999999985 9999999999776644311000                       00   00000


Q ss_pred             ccceee------------ccccc--CceeEEEeEEEEeeccEEE--ecCC--eEEEecEEEEecCCCCCCCCch---HHH
Q 017664           67 VRSVIN------------HGDYL--SNVKIVVSTAVSITDTEVV--TAGG--QTFVYDYVVVATGHVESVPKSR---TER  125 (368)
Q Consensus        67 ~~~~~~------------~~~~~--~~~~~~~~~~~~~~~~~v~--~~~g--~~~~~d~lvlAtG~~~~~p~~~---~~~  125 (368)
                      ...+..            ..+++  .+++++.+....++++.+.  +.+|  ..++||+||+|||+.|..|++.   ...
T Consensus        84 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~p~~~g~~~~~  163 (470)
T 1dxl_A           84 LAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKK  163 (470)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEECCBTTBCCCSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCCCCccc
Confidence            000000            00111  2577877777777776443  3456  7899999999999997666532   212


Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEeccee
Q 017664          126 LSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSV  205 (368)
Q Consensus       126 ~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v  205 (368)
                      +.+..........+++++|||+|++|+|+|..+.+  .+.+|+++++.+++++.+++++.+.+.+.+++.||++++++.|
T Consensus       164 v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v  241 (470)
T 1dxl_A          164 IVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGR--IGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKV  241 (470)
T ss_dssp             EECHHHHTTCSSCCSEEEESCCSHHHHHHHHHHHH--HTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEE
T ss_pred             EEeHHHhhhhhhcCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCCcccccccHHHHHHHHHHHHHcCCEEEeCCEE
Confidence            22333322222347999999999999999999986  4789999999999999899999999999999999999999999


Q ss_pred             eecccCCC--eEEcC---CC--cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCC
Q 017664          206 TLNTISDG--LIETS---SG--ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITD  278 (368)
Q Consensus       206 ~~i~~~~~--~v~~~---~g--~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~  278 (368)
                      .+++.+++  .+.+.   +|  +++++|.+|+|+|++|+.+++....+++.++++|+|.||+++|| +.|+|||+|||++
T Consensus       242 ~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t-~~~~Iya~GD~~~  320 (470)
T 1dxl_A          242 VGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFST-NVSGVYAIGDVIP  320 (470)
T ss_dssp             EEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCTTCBC-SSTTEEECSTTSS
T ss_pred             EEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECcCCcc-CCCCEEEEeccCC
Confidence            99987654  44443   44  68999999999999999988433333446777899999999998 8999999999997


Q ss_pred             CCccchHHHHHHHHHHHHHHHHHHHcCCCCCCccccc-------cCCCeEEEeecCCccee--------EecCc-----c
Q 017664          279 IPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYK-------PGYPIALVSLGRREGVA--------HFPFL-----T  338 (368)
Q Consensus       279 ~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~~~~~~~~-------~~~~~~~~~~g~~~~~~--------~~~~~-----~  338 (368)
                      .+  ++++.|.+||+.||+||.    |++. + ..|.       ..|+++.+|+++.++..        .+++.     .
T Consensus       321 ~~--~~~~~A~~~g~~aa~~i~----g~~~-~-~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~  392 (470)
T 1dxl_A          321 GP--MLAHKAEEDGVACVEYLA----GKVG-H-VDYDKVPGVVYTNPEVASVGKTEEQVKETGVEYRVGKFPFMANSRAK  392 (470)
T ss_dssp             SC--CCHHHHHHHHHHHHHHHT----TSCC-C-CCTTSCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHH
T ss_pred             CC--ccHHHHHHHHHHHHHHHc----CCCc-C-CCCCCCCEEEECCCceEEEcCCHHHHHhcCCcEEEEEEecccchHHH
Confidence            64  378899999999999997    3321 1 1221       24678888887765532        12221     1


Q ss_pred             ccCccceeeeccccchhHHHHHcCCCC
Q 017664          339 ISGRIPGWIKSRDLFVGKTRKQLGLKP  365 (368)
Q Consensus       339 ~~~~~~~~~k~~~~~~~~~~~~lG~~~  365 (368)
                      ..+...+++|+  ++++++++|||+|+
T Consensus       393 ~~~~~~~~~k~--~~~~~~~~ilG~~~  417 (470)
T 1dxl_A          393 AIDNAEGLVKI--IAEKETDKILGVHI  417 (470)
T ss_dssp             HHSCCCCEEEE--EEETTTCBEEEEEE
T ss_pred             hcCCCcEEEEE--EEECCCCEEEEEEE
Confidence            23556789999  99999999999986

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=100.00  E-value=6.8e-43  Score=333.60  Aligned_cols=335  Identities=19%  Similarity=0.264  Sum_probs=242.2

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccc--------e----------e-ee----e--cccccccc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWAS--------L----------R-AV----V--EPSFAVRS   69 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~--------~----------~-~~----~--~~~~~~~~   69 (368)
                      ++||+||||||||+++|..|++ |++|+|||++. ++..+..        +          . ..    .  ........
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~~-~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~~~~   81 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKY-WGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDYGI   81 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEECHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC-CCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccCHHH
Confidence            5799999999999999999984 99999999983 3322100        0          0 00    0  00000000


Q ss_pred             eee------------ccccc--CceeEEEeEEEEeecc--EEEecCC--eEEEecEEEEecCCCCCCCCchH--HHHHHH
Q 017664           70 VIN------------HGDYL--SNVKIVVSTAVSITDT--EVVTAGG--QTFVYDYVVVATGHVESVPKSRT--ERLSQY  129 (368)
Q Consensus        70 ~~~------------~~~~~--~~~~~~~~~~~~~~~~--~v~~~~g--~~~~~d~lvlAtG~~~~~p~~~~--~~~~~~  129 (368)
                      ...            ..+++  .+++++......++.+  .+.+.+|  ..++||+||+|||+.|..|++..  ..+.+.
T Consensus        82 ~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~~~~~g~~~~~~~~  161 (464)
T 2a8x_A           82 AYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSLSANVVTY  161 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEESSSSEEEEEETTSCCEEEEEEEEEECCCEEECCCTTCCCBTTEECH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCCCCceEEec
Confidence            000            00111  2677777776666665  3455567  78999999999999976554321  112233


Q ss_pred             HHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecc
Q 017664          130 EKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNT  209 (368)
Q Consensus       130 ~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~  209 (368)
                      .........+++++|||+|++|+|+|..+.+  .+.+|+++++.+++++.+++++.+.+.+.+++.||++++++.+.+++
T Consensus       162 ~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~  239 (464)
T 2a8x_A          162 EEQILSRELPKSIIIAGAGAIGMEFGYVLKN--YGVDVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTILTATKVESIA  239 (464)
T ss_dssp             HHHHTCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEECSCEEEEEE
T ss_pred             HHHhhccccCCeEEEECCcHHHHHHHHHHHH--cCCeEEEEEcCCccccccCHHHHHHHHHHHHHcCCEEEeCcEEEEEE
Confidence            3322222347899999999999999999985  48899999999999999999999999999999999999999999998


Q ss_pred             cCCC--eEEcC-CC--cEEecCEEEEccCCCCCchh--hhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCcc
Q 017664          210 ISDG--LIETS-SG--ETIDTDCHFMCTGKAMASSW--LRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEI  282 (368)
Q Consensus       210 ~~~~--~v~~~-~g--~~i~~d~vi~a~G~~p~~~~--~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~  282 (368)
                      .+++  .+.+. +|  +++++|.+|+|+|++|+.++  +...++  .++++|+|.||+++|| +.|||||+|||++.+  
T Consensus       240 ~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl--~~~~~G~i~vd~~~~t-~~~~IyA~GD~~~~~--  314 (464)
T 2a8x_A          240 DGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGV--ALTDRKAIGVDDYMRT-NVGHIYAIGDVNGLL--  314 (464)
T ss_dssp             ECSSCEEEEEESSSCEEEEEESEEEECSCEEECCSSSCHHHHTC--CBCTTSSBCCCTTSBC-SSTTEEECGGGGCSS--
T ss_pred             EcCCeEEEEEEcCCceEEEEcCEEEECCCCCccCCCCCchhcCC--ccCCCCCEeECcCCcc-CCCCEEEeECcCCCc--
Confidence            7654  44543 56  68999999999999999887  444444  6777899999999998 899999999999864  


Q ss_pred             chHHHHHHHHHHHHHHHHHHHcC-CCCCCccccc-------cCCCeEEEeecCCccee--------EecCc-----cccC
Q 017664          283 KQGYLAQKHALVTAKNLKKLMMG-RNKGTMATYK-------PGYPIALVSLGRREGVA--------HFPFL-----TISG  341 (368)
Q Consensus       283 ~~~~~a~~~g~~aa~~i~~~l~g-~~~~~~~~~~-------~~~~~~~~~~g~~~~~~--------~~~~~-----~~~~  341 (368)
                      ++++.|.+||+.||+||.    | .+. +...|.       ..|+++.+|+++.++..        .+++.     ...+
T Consensus       315 ~~~~~A~~~g~~aa~~i~----g~~~~-~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~  389 (464)
T 2a8x_A          315 QLAHVAEAQGVVAAETIA----GAETL-TLGDHRMLPRATFCQPNVASFGLTEQQARNEGYDVVVAKFPFTANAKAHGVG  389 (464)
T ss_dssp             CSHHHHHHHHHHHHHHHH----TCCCC-CCCCGGGSCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHT
T ss_pred             cCHHHHHHHHHHHHHHhc----CCCCc-ccCCCCCCCEEEECCCCeEEEcCCHHHHHhcCCCEEEEEEEcchhhhhhhcC
Confidence            378899999999999998    4 221 101221       24678888887765532        12221     1235


Q ss_pred             ccceeeeccccchhHHHHHcCCCC
Q 017664          342 RIPGWIKSRDLFVGKTRKQLGLKP  365 (368)
Q Consensus       342 ~~~~~~k~~~~~~~~~~~~lG~~~  365 (368)
                      ...+++|+  ++++++++|||+|+
T Consensus       390 ~~~~~~k~--~~~~~~~~ilG~~~  411 (464)
T 2a8x_A          390 DPSGFVKL--VADAKHGELLGGHL  411 (464)
T ss_dssp             CCCCEEEE--EEETTTTEEEEEEE
T ss_pred             CCcEEEEE--EEECCCCEEEEEEE
Confidence            56789998  99999999999986

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=100.00  E-value=4.5e-42  Score=329.44  Aligned_cols=340  Identities=16%  Similarity=0.150  Sum_probs=243.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC---------ceeeecccee------------------e---e-e
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE---------YFEITWASLR------------------A---V-V   61 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~---------~~~~~~~~~~------------------~---~-~   61 (368)
                      +.++||+||||||||++||.+|+ .|++|+|||+.+         .+|+.+....                  .   + .
T Consensus         7 ~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~g~   86 (483)
T 3dgh_A            7 SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGW   86 (483)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTB
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhcCc
Confidence            45799999999999999999998 599999999421         1333221100                  0   0 0


Q ss_pred             ----cccccccceeecc------------c--ccCceeEEEeEEEEeeccEE--EecCC-eEEEecEEEEecCCCCCCCC
Q 017664           62 ----EPSFAVRSVINHG------------D--YLSNVKIVVSTAVSITDTEV--VTAGG-QTFVYDYVVVATGHVESVPK  120 (368)
Q Consensus        62 ----~~~~~~~~~~~~~------------~--~~~~~~~~~~~~~~~~~~~v--~~~~g-~~~~~d~lvlAtG~~~~~p~  120 (368)
                          ........+..+.            .  ...+++++.+.+..++++.+  .+.++ ..++||+||||||+.|..|+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~d~lviATGs~p~~p~  166 (483)
T 3dgh_A           87 NVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPD  166 (483)
T ss_dssp             CCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEEECCCEEECCCS
T ss_pred             ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEccCCEEEEEeCCCeEEEEcCEEEEeCCCCcCCCC
Confidence                0000000000000            0  01367888888888887754  44455 47999999999999987776


Q ss_pred             chHHHH--HHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcE
Q 017664          121 SRTERL--SQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVE  198 (368)
Q Consensus       121 ~~~~~~--~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~  198 (368)
                      +++...  .+..........+++++|||+|++|+|+|..+.+  .+.+|+++++. .+++.+++++.+.+.+.+++.||+
T Consensus       167 i~G~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~-~~l~~~d~~~~~~l~~~l~~~Gv~  243 (483)
T 3dgh_A          167 IPGAVEYGITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKG--LGYEPTVMVRS-IVLRGFDQQMAELVAASMEERGIP  243 (483)
T ss_dssp             STTHHHHCBCHHHHTTCSSCCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESS-CSSTTSCHHHHHHHHHHHHHTTCC
T ss_pred             CCCcccccCcHHHHhhhhhcCCcEEEECCCHHHHHHHHHHHH--cCCEEEEEeCC-CCCcccCHHHHHHHHHHHHhCCCE
Confidence            654321  1222222222347899999999999999999985  48899999984 678888999999999999999999


Q ss_pred             EEecceeeecccCCC---eEEcCCCc-----EEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCe
Q 017664          199 VILNQSVTLNTISDG---LIETSSGE-----TIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNV  270 (368)
Q Consensus       199 i~~~~~v~~i~~~~~---~v~~~~g~-----~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~i  270 (368)
                      +++++.+.+++.+++   .+.+.+++     ++++|.+|+|+|++|+.+++....+++.+++ |++.||+++|| +.|||
T Consensus       244 i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~-G~i~vd~~~~t-~~~~I  321 (483)
T 3dgh_A          244 FLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK-DKIPVDSQEAT-NVANI  321 (483)
T ss_dssp             EEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBT-TBBCCCTTCBC-SSTTE
T ss_pred             EEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccCcCcCCchhcCccccC-CEEEECcCCcc-CCCCE
Confidence            999999998876433   46655543     7999999999999999988754445557777 99999999998 89999


Q ss_pred             EEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCc-------cccccCCCeEEEeecCCcceeEe---------
Q 017664          271 FAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTM-------ATYKPGYPIALVSLGRREGVAHF---------  334 (368)
Q Consensus       271 fa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~---------  334 (368)
                      ||+|||+.. .+++++.|.+||+.+|+||+    |......       ..| ..|+++.+|+++.+|..+.         
T Consensus       322 yA~GD~~~~-~~~~~~~A~~~g~~aa~~i~----g~~~~~~~~~~~p~~~~-~~p~~a~vGlte~~a~~~~~~~~~~~~~  395 (483)
T 3dgh_A          322 YAVGDIIYG-KPELTPVAVLAGRLLARRLY----GGSTQRMDYKDVATTVF-TPLEYACVGLSEEDAVKQFGADEIEVFH  395 (483)
T ss_dssp             EECSTTBTT-SCCCHHHHHHHHHHHHHHHH----SCCCCCCCCTTCCEEEC-SSSEEEEEECCHHHHHHHHCGGGEEEEE
T ss_pred             EEEEcccCC-CCccHHHHHHHHHHHHHHHc----CCCCCcCCCCCCCEEEE-CCCccEEEeCCHHHHHhhCCCCCEEEEE
Confidence            999999843 24478999999999999998    4321110       112 2578899999987765321         


Q ss_pred             -cCcc----c--cCccceeeeccccchhH-HHHHcCCCCC
Q 017664          335 -PFLT----I--SGRIPGWIKSRDLFVGK-TRKQLGLKPT  366 (368)
Q Consensus       335 -~~~~----~--~~~~~~~~k~~~~~~~~-~~~~lG~~~~  366 (368)
                       .+..    +  .+...+++|+  +++++ +++|||+|+.
T Consensus       396 ~~~~~~~~~~~~~~~~~~~~k~--i~~~~~~~~ilG~~~~  433 (483)
T 3dgh_A          396 GYYKPTEFFIPQKSVRYCYLKA--VAERHGDQRVYGLHYI  433 (483)
T ss_dssp             EECCCGGGTTTTCCCTTCEEEE--EEESSTTCBEEEEEEE
T ss_pred             EeecchhhhhhccCCCcEEEEE--EEecCCCCEEEEEEEE
Confidence             1111    1  1235689998  99987 9999999863

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=100.00  E-value=1.2e-42  Score=334.74  Aligned_cols=337  Identities=19%  Similarity=0.228  Sum_probs=247.0

Q ss_pred             CCcEEEECCChHHHHHHHHhh-c---CCcEEEEcCCCceeeeccce---e---------------ee--------ec-cc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-S---FADVVLIDEKEYFEITWASL---R---------------AV--------VE-PS   64 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~---g~~v~lie~~~~~~~~~~~~---~---------------~~--------~~-~~   64 (368)
                      ++||+|||||+||+++|.+|+ .   |++|+|||+++ +|+.+...   .               ..        .. ..
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~~~   80 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAK   80 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------C
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCCCc
Confidence            479999999999999999997 5   89999999997 54321100   0               00        00 00


Q ss_pred             ccccceee------------ccccc--CceeEEEeEEEEeec------cE--EEecCCe--EEEecEEEEecCCCCCCCC
Q 017664           65 FAVRSVIN------------HGDYL--SNVKIVVSTAVSITD------TE--VVTAGGQ--TFVYDYVVVATGHVESVPK  120 (368)
Q Consensus        65 ~~~~~~~~------------~~~~~--~~~~~~~~~~~~~~~------~~--v~~~~g~--~~~~d~lvlAtG~~~~~p~  120 (368)
                      .....+..            ..+++  .+++++...+..+++      +.  +.+.++.  .+.||+||+|||+.|..|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p~~p~  160 (499)
T 1xdi_A           81 ISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILP  160 (499)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCG
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCCC
Confidence            00000000            01111  267888888888877      43  4445665  7999999999999977665


Q ss_pred             chH---HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCc
Q 017664          121 SRT---ERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKV  197 (368)
Q Consensus       121 ~~~---~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv  197 (368)
                      ++.   ..+.+..........+++++|||+|++|+|+|..+.+  .+.+|+++++.+++++.+++++.+.+.+.+++.||
T Consensus       161 i~g~~~~~v~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV  238 (499)
T 1xdi_A          161 SAQPDGERILTWRQLYDLDALPDHLIVVGSGVTGAEFVDAYTE--LGVPVTVVASQDHVLPYEDADAALVLEESFAERGV  238 (499)
T ss_dssp             GGCCCSSSEEEGGGGGGCSSCCSSEEEESCSHHHHHHHHHHHH--TTCCEEEECSSSSSSCCSSHHHHHHHHHHHHHTTC
T ss_pred             CCCCCcCcEEehhHhhhhhccCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCC
Confidence            432   1122222222222347899999999999999999885  58899999999999999999999999999999999


Q ss_pred             EEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecc
Q 017664          198 EVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGD  275 (368)
Q Consensus       198 ~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD  275 (368)
                      ++++++.|++++.+++  .+.+.+|+++++|.||+|+|.+|+.+++....+++.++++|+|.||+++|| +.|+|||+||
T Consensus       239 ~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~~~t-~~~~IyA~GD  317 (499)
T 1xdi_A          239 RLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVSRT-LATGIYAAGD  317 (499)
T ss_dssp             EEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCCSSSBC-SSTTEEECSG
T ss_pred             EEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEECCCccc-CCCCEEEEec
Confidence            9999999999987654  566788889999999999999999988432333446777899999999998 8999999999


Q ss_pred             cCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCccccc-------cCCCeEEEeecCCccee--------EecCc---
Q 017664          276 ITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYK-------PGYPIALVSLGRREGVA--------HFPFL---  337 (368)
Q Consensus       276 ~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~~~~~~~~-------~~~~~~~~~~g~~~~~~--------~~~~~---  337 (368)
                      |++.+.  +++.|.+||+.+|+||.    |....+. .|.       ..|+++.+|+.+.++..        .+++.   
T Consensus       318 ~~~~~~--l~~~A~~~g~~aa~~i~----g~~~~~~-~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~  390 (499)
T 1xdi_A          318 CTGLLP--LASVAAMQGRIAMYHAL----GEGVSPI-RLRTVAATVFTRPEIAAVGVPQSVIDAGSVAARTIMLPLRTNA  390 (499)
T ss_dssp             GGTSCS--CHHHHHHHHHHHHHHHT----TCCCCCC-CGGGCEEEECSSSEEEEEESCHHHHHHTSSCEEEEEEESTTSH
T ss_pred             cCCCcc--cHHHHHHHHHHHHHHhc----CCCCccC-CCCCCcEEEEecCCceEeCCCHHHHHhCCCCEEEEEEecCccc
Confidence            998653  78899999999999997    4311111 111       24778888887765432        22221   


Q ss_pred             --cccCccceeeeccccchhHHHHHcCCCC
Q 017664          338 --TISGRIPGWIKSRDLFVGKTRKQLGLKP  365 (368)
Q Consensus       338 --~~~~~~~~~~k~~~~~~~~~~~~lG~~~  365 (368)
                        ...+...+++|+  ++++++++|||+|+
T Consensus       391 ~~~~~~~~~g~~k~--~~~~~~~~ilG~~~  418 (499)
T 1xdi_A          391 RAKMSEMRHGFVKI--FCRRSTGVVIGGVV  418 (499)
T ss_dssp             HHHHTTCSSCEEEE--EEETTTCBEEEEEE
T ss_pred             ceeecCCCceEEEE--EEECCCCEEEEEEE
Confidence              134566789999  99999999999986

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=100.00  E-value=1.6e-42  Score=332.30  Aligned_cols=344  Identities=19%  Similarity=0.255  Sum_probs=244.3

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccce------------------e-eeec--------cc
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASL------------------R-AVVE--------PS   64 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~------------------~-~~~~--------~~   64 (368)
                      |++++||+||||||+|+++|..|++ |++|+|||+++.+|..+...                  . ....        ..
T Consensus         2 M~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~   81 (478)
T 1v59_A            2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIK   81 (478)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEE
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCc
Confidence            3456899999999999999999984 99999999987665432110                  0 0000        00


Q ss_pred             ccccceee------------cccc--cCceeEEEeEEEEeeccE--EEecCC--eE------EEecEEEEecCCCC-CCC
Q 017664           65 FAVRSVIN------------HGDY--LSNVKIVVSTAVSITDTE--VVTAGG--QT------FVYDYVVVATGHVE-SVP  119 (368)
Q Consensus        65 ~~~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~~--v~~~~g--~~------~~~d~lvlAtG~~~-~~p  119 (368)
                      +....+..            ..++  ..+++++.......+++.  +.+.+|  +.      ++||+||+|||+.| .+|
T Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p~~~~  161 (478)
T 1v59_A           82 INVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFP  161 (478)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEESSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEECCCT
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEecCCCcccccccceEEeCEEEECcCCCCCCCC
Confidence            00000000            0001  136788877776666654  444455  46      99999999999986 345


Q ss_pred             CchHH--HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCc
Q 017664          120 KSRTE--RLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKV  197 (368)
Q Consensus       120 ~~~~~--~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv  197 (368)
                      +.+..  .+.+..........+++++|||+|++|+|+|..+.+  .+.+|+++++.+++++.+++++.+.+.+.+++.||
T Consensus       162 g~~~~~~~v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv  239 (478)
T 1v59_A          162 GIEIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSR--LGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGL  239 (478)
T ss_dssp             TCCCCSSSEECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCceEEcHHHHHhhhccCceEEEECCCHHHHHHHHHHHH--cCCEEEEEEeCCccccccCHHHHHHHHHHHHHCCC
Confidence            44321  122333322222247999999999999999999985  58899999999999998999999999999999999


Q ss_pred             EEEecceeeeccc--CCC--eEEcC-----CCcEEecCEEEEccCCCCCch--hhhccccccccCCCCcEEeCCCeeecC
Q 017664          198 EVILNQSVTLNTI--SDG--LIETS-----SGETIDTDCHFMCTGKAMASS--WLRETILKDSLDGRGRLMVDENLRVRG  266 (368)
Q Consensus       198 ~i~~~~~v~~i~~--~~~--~v~~~-----~g~~i~~d~vi~a~G~~p~~~--~~~~~~l~~~~~~~g~i~vd~~~~~~~  266 (368)
                      ++++++.|.+++.  +++  .+.+.     +++++++|.||+|+|++|+.+  ++...++  .++++|+|.||+++|| +
T Consensus       240 ~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~--~~~~~G~i~vd~~~~t-~  316 (478)
T 1v59_A          240 DFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGL--EVDKRGRLVIDDQFNS-K  316 (478)
T ss_dssp             EEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTTTTTC--CBCTTSCBCCCTTSBC-S
T ss_pred             EEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCchhcCc--eeCCCCCEeECcCCcc-C
Confidence            9999999999876  443  45554     456899999999999999987  5565554  6778899999999998 8


Q ss_pred             CCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCc-cccccCCCeEEEeecCCccee--------EecCc
Q 017664          267 FKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTM-ATYKPGYPIALVSLGRREGVA--------HFPFL  337 (368)
Q Consensus       267 ~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~~~~-~~~~~~~~~~~~~~g~~~~~~--------~~~~~  337 (368)
                      .|||||+|||++.+.  +++.|.+||+.||+||...-..-+.... ......|+++.+|+++.++..        .+++.
T Consensus       317 ~~~IyA~GD~~~~~~--~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~  394 (478)
T 1v59_A          317 FPHIKVVGDVTFGPM--LAHKAEEEGIAAVEMLKTGHGHVNYNNIPSVMYSHPEVAWVGKTEEQLKEAGIDYKIGKFPFA  394 (478)
T ss_dssp             STTEEECGGGSSSCC--CHHHHHHHHHHHHHHHHHSCCCCCTTSCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGG
T ss_pred             CCCEEEeeccCCCcc--cHHHHHHHHHHHHHHHcCCCCCCCCCCCCEEEEcCCcEEEEECCHHHHHHcCCCEEEEEEecc
Confidence            999999999998643  7889999999999999852100000001 111125778888887765431        12221


Q ss_pred             c-----ccCccceeeeccccchhHHHHHcCCCC
Q 017664          338 T-----ISGRIPGWIKSRDLFVGKTRKQLGLKP  365 (368)
Q Consensus       338 ~-----~~~~~~~~~k~~~~~~~~~~~~lG~~~  365 (368)
                      .     ..+...+++|+  ++++++++|||+|+
T Consensus       395 ~~~~~~~~~~~~~~~k~--~~~~~~~~ilG~~~  425 (478)
T 1v59_A          395 ANSRAKTNQDTEGFVKI--LIDSKTERILGAHI  425 (478)
T ss_dssp             GCHHHHHTTCCCCEEEE--EEETTTCBEEEEEE
T ss_pred             cchhhhhcCCCcEEEEE--EEECCCCEEEEEEE
Confidence            1     23455789998  99999999999986

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=100.00  E-value=3.1e-42  Score=330.87  Aligned_cols=339  Identities=19%  Similarity=0.176  Sum_probs=243.6

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcC--------CCceeeecccee------------------ee----e--
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDE--------KEYFEITWASLR------------------AV----V--   61 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~--------~~~~~~~~~~~~------------------~~----~--   61 (368)
                      .++||+||||||||++||.+|+ .|.+|+|||+        ...+|+.|....                  ..    .  
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~~~   84 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWEV   84 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCccc
Confidence            4689999999999999999997 5999999997        333443321100                  00    0  


Q ss_pred             --cccccccceeec------------ccc--cCceeEEEeEEEEeeccEE--EecCC--eEEEecEEEEecCCCCCCCC-
Q 017664           62 --EPSFAVRSVINH------------GDY--LSNVKIVVSTAVSITDTEV--VTAGG--QTFVYDYVVVATGHVESVPK-  120 (368)
Q Consensus        62 --~~~~~~~~~~~~------------~~~--~~~~~~~~~~~~~~~~~~v--~~~~g--~~~~~d~lvlAtG~~~~~p~-  120 (368)
                        ........+..+            ...  ..+++++.+.+..++++.+  .+.+|  ..+.||+||||||+.|..|+ 
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~~  164 (488)
T 3dgz_A           85 AQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQ  164 (488)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCEEEESSSSEEEEECTTSCEEEEEEEEEEECCCEEECCCSS
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCceEEEECCEEEEcCCCCCCCCCC
Confidence              000000000000            000  1367889999999988754  44455  57999999999999987776 


Q ss_pred             chHHHH--HHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcE
Q 017664          121 SRTERL--SQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVE  198 (368)
Q Consensus       121 ~~~~~~--~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~  198 (368)
                      +++...  .+..........+++++|||+|++|+|+|..+.+  .+.+|+++++. .+++.+++++.+.+.+.+++.||+
T Consensus       165 i~G~~~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~-~~l~~~d~~~~~~l~~~l~~~gv~  241 (488)
T 3dgz_A          165 VKGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTG--IGLDTTVMMRS-IPLRGFDQQMSSLVTEHMESHGTQ  241 (488)
T ss_dssp             CBTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESS-CSSTTSCHHHHHHHHHHHHHTTCE
T ss_pred             CCCcccccCcHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHH--cCCceEEEEcC-cccccCCHHHHHHHHHHHHHCCCE
Confidence            654321  1222222223357899999999999999999986  48899999986 477888999999999999999999


Q ss_pred             EEecceeeecccC-CC--eEEcCC---Cc--EEecCEEEEccCCCCCchhhhccccccccC-CCCcEEeCCCeeecCCCC
Q 017664          199 VILNQSVTLNTIS-DG--LIETSS---GE--TIDTDCHFMCTGKAMASSWLRETILKDSLD-GRGRLMVDENLRVRGFKN  269 (368)
Q Consensus       199 i~~~~~v~~i~~~-~~--~v~~~~---g~--~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~-~~g~i~vd~~~~~~~~~~  269 (368)
                      +++++.+.+++.. ++  .+.+.+   |+  ++++|.||+|+|++|+.+++....+++.++ ++|+|.||+++|| +.||
T Consensus       242 ~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i~vd~~~~t-~~~~  320 (488)
T 3dgz_A          242 FLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEAT-SVPH  320 (488)
T ss_dssp             EEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSCCBCCCTTSBC-SSTT
T ss_pred             EEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCCCeEeECCCCcc-CCCC
Confidence            9999999988763 33  344433   54  579999999999999998865444555778 7899999999998 8999


Q ss_pred             eEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCC-------ccccccCCCeEEEeecCCcceeEe--------
Q 017664          270 VFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGT-------MATYKPGYPIALVSLGRREGVAHF--------  334 (368)
Q Consensus       270 ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~--------  334 (368)
                      |||+|||+.. .+++++.|.+||+.+|+||+    |.....       ...| ..|+++.+|+++.+|....        
T Consensus       321 IyA~GD~~~~-~~~~~~~A~~~g~~aa~~i~----g~~~~~~~~~~~p~~~~-~~p~~a~vGlte~~a~~~~~~~~~~~~  394 (488)
T 3dgz_A          321 IYAIGDVAEG-RPELTPTAIKAGKLLAQRLF----GKSSTLMDYSNVPTTVF-TPLEYGCVGLSEEEAVALHGQEHVEVY  394 (488)
T ss_dssp             EEECGGGBTT-CCCCHHHHHHHHHHHHHHHH----SCCCCCCCCTTCCEEEC-SSSEEEEEECCHHHHHHHHCGGGEEEE
T ss_pred             EEEeEEecCC-CCcchhHHHHHHHHHHHHHc----CCCCccCCCCCCCEEEE-CCCCeEEEeCCHHHHHhhCCCCcEEEE
Confidence            9999999843 23478899999999999998    332111       1112 2578999999987765321        


Q ss_pred             --cCcc----cc--Cccceeeeccccch-hHHHHHcCCCC
Q 017664          335 --PFLT----IS--GRIPGWIKSRDLFV-GKTRKQLGLKP  365 (368)
Q Consensus       335 --~~~~----~~--~~~~~~~k~~~~~~-~~~~~~lG~~~  365 (368)
                        .+..    ..  +...+++|+  +++ +++++|||+|+
T Consensus       395 ~~~~~~~~~~~~~~~~~~g~~k~--i~~~~~~~~ilG~~~  432 (488)
T 3dgz_A          395 HAYYKPLEFTVADRDASQCYIKM--VCMREPPQLVLGLHF  432 (488)
T ss_dssp             EEECCCHHHHHTTCCCTTCEEEE--EEESSTTCBEEEEEE
T ss_pred             EccccchhhhhhccCCCcEEEEE--EEecCCCCEEEEEEE
Confidence              1111    11  225789998  999 58999999986

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=100.00  E-value=7.4e-41  Score=314.09  Aligned_cols=277  Identities=21%  Similarity=0.296  Sum_probs=214.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhc-CC--cEEEEcCCCceeeeccceee-eecccccccceee-cccccCceeEEEeE-E
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQS-FA--DVVLIDEKEYFEITWASLRA-VVEPSFAVRSVIN-HGDYLSNVKIVVST-A   87 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~-g~--~v~lie~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~   87 (368)
                      .+++||+|||||+||+++|..|++ |.  +|+|||+++.+++....+.. ........+.... +.  ..+++++... +
T Consensus         5 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~v   82 (408)
T 2gqw_A            5 ALKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKR--APEVEWLLGVTA   82 (408)
T ss_dssp             -CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTHHHHHCCGGGSBCCCTT--SCSCEEEETCCE
T ss_pred             CCCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCCCCCHHHhCCCchhhhhHHHHH--HCCCEEEcCCEE
Confidence            346899999999999999999984 66  59999999876644322211 1111111111111 11  1267787774 7


Q ss_pred             EEeec--cEEEecCCeEEEecEEEEecCCCCCCCCc-hH--H------HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHH
Q 017664           88 VSITD--TEVVTAGGQTFVYDYVVVATGHVESVPKS-RT--E------RLSQYEKDFEKVKSANSVLIVGGGPTGVELAG  156 (368)
Q Consensus        88 ~~~~~--~~v~~~~g~~~~~d~lvlAtG~~~~~p~~-~~--~------~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~  156 (368)
                      ..++.  +++.+.+++.+.||+||+|||+.|..|++ ++  +      ...+.....+.+..+++++|||+|++|+|+|.
T Consensus        83 ~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~i~~G~~~~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~  162 (408)
T 2gqw_A           83 QSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAA  162 (408)
T ss_dssp             EEEETTTTEEEETTSCEEECSEEEECCCEEECCCGGGTTCSSCEEECCSHHHHHHHHTTCCTTCEEEEECCSHHHHHHHH
T ss_pred             EEEECCCCEEEECCCCEEECCEEEECCCCCCCCCCccCCCCCcEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHH
Confidence            88875  47888888899999999999999776654 32  1      12222223223345899999999999999999


Q ss_pred             HHhhhCCCCeEEEEecCccccc-ccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCCcEEecCEEEEccCCC
Q 017664          157 EIAVDFPDKKVILVHRGPKLLE-FVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       157 ~l~~~~~~~~v~~i~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      .+.+  .+.+|+++++.+++++ .+++++...+.+.+++.||++++++.|.+++ ++ .+.+.+|+++++|.+|+|+|++
T Consensus       163 ~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~~-~v~~~~g~~i~~D~vi~a~G~~  238 (408)
T 2gqw_A          163 TART--AGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSV-DG-VVLLDDGTRIAADMVVVGIGVL  238 (408)
T ss_dssp             HHHH--TTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEE-TT-EEEETTSCEEECSEEEECSCEE
T ss_pred             HHHh--CCCEEEEEEeCCcccccccCHHHHHHHHHHHHHcCcEEEeCCEEEEEE-CC-EEEECCCCEEEcCEEEECcCCC
Confidence            9985  4889999999999888 4888999999999999999999999999988 33 8888899999999999999999


Q ss_pred             CCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCcc--------chHHHHHHHHHHHHHHHHH
Q 017664          236 MASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEI--------KQGYLAQKHALVTAKNLKK  301 (368)
Q Consensus       236 p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~--------~~~~~a~~~g~~aa~~i~~  301 (368)
                      |+.+++...++  ..+ +| +.||+++|| +.|+|||+|||+..+.+        .++..|.+||+.+|+||..
T Consensus       239 p~~~l~~~~gl--~~~-~g-i~Vd~~~~t-~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  307 (408)
T 2gqw_A          239 ANDALARAAGL--ACD-DG-IFVDAYGRT-TCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVD  307 (408)
T ss_dssp             ECCHHHHHHTC--CBS-SS-EECCTTCBC-SSTTEEECGGGEEEEETTTTEEECCCCHHHHHHHHHHHHHHHHC
T ss_pred             ccHHHHHhCCC--CCC-CC-EEECCCCcc-CCCCEEEEEEEEEecCccCCceeeccHHHHHHHHHHHHHHHhcC
Confidence            99988887766  444 46 999999998 89999999999986542        2568899999999999983

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=100.00  E-value=2.8e-41  Score=323.49  Aligned_cols=337  Identities=19%  Similarity=0.300  Sum_probs=242.7

Q ss_pred             CCcEEEECCChHHHHHHHHhhc---CCcEEEEcCCCceeeeccceeeeecccc--cccceeeccccc---CceeEEE-eE
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYFEITWASLRAVVEPSF--AVRSVINHGDYL---SNVKIVV-ST   86 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~-~~   86 (368)
                      ++||+|||||+||+++|.+|++   +.+|+|||+++..++....+........  ..+......+.+   .+++++. ..
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gv~~~~~~~  115 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHE  115 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHHHHHHTTCCEEESSEE
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHHHHHhhcCCEEEeCCE
Confidence            4699999999999999999974   8999999999876544332221111111  111111111111   2677765 46


Q ss_pred             EEEee--ccEEEec---CCe--EEEecEEEEecCCCCCCCCchH---H------HHHHHHHHHHHHh--cCCeEEEEcCc
Q 017664           87 AVSIT--DTEVVTA---GGQ--TFVYDYVVVATGHVESVPKSRT---E------RLSQYEKDFEKVK--SANSVLIVGGG  148 (368)
Q Consensus        87 ~~~~~--~~~v~~~---~g~--~~~~d~lvlAtG~~~~~p~~~~---~------~~~~~~~~~~~~~--~~~~v~VvG~g  148 (368)
                      +..++  .+.+.+.   +|+  .+.||+||+|||+.|..|++++   .      ...+.....+.+.  .+++++|||+|
T Consensus       116 v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG  195 (480)
T 3cgb_A          116 VTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPEWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGG  195 (480)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCBTTTSBTEECCSSHHHHHHHHHHHHSSCCCEEEEECCH
T ss_pred             EEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCcccCCCCCCccCCCEEEeCCHHHHHHHHHHhhhcCCCeEEEECCC
Confidence            66776  3455543   365  7999999999999976665432   1      1222333333333  68999999999


Q ss_pred             hhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecC
Q 017664          149 PTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTD  226 (368)
Q Consensus       149 ~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d  226 (368)
                      ++|+|+|..+.+  .+.+|+++++.+++++.+++++.+.+.+.+++.||++++++.|.+++.++.  .+.++ +.++++|
T Consensus       196 ~~g~e~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~v~~v~~~-~~~i~~D  272 (480)
T 3cgb_A          196 AIGLEMAETFVE--LGKKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNERVEAVETD-KGTYKAD  272 (480)
T ss_dssp             HHHHHHHHHHHH--TTCEEEEECCGGGTTSSSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSBEEEEEET-TEEEECS
T ss_pred             HHHHHHHHHHHh--cCCeEEEEEeCCchhhcCCHHHHHHHHHHHHHcCcEEEcCCEEEEEEcCCcEEEEEEC-CCEEEcC
Confidence            999999999985  488999999999998888999999999999999999999999998876543  35554 4589999


Q ss_pred             EEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCc--------cchHHHHHHHHHHHHHH
Q 017664          227 CHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPE--------IKQGYLAQKHALVTAKN  298 (368)
Q Consensus       227 ~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~--------~~~~~~a~~~g~~aa~~  298 (368)
                      .||+|+|++|+.+++...++  .++++|+|.||+++|| +.|+|||+|||+..+.        +.+++.|.+||+.+|+|
T Consensus       273 ~vi~a~G~~p~~~~l~~~g~--~~~~~G~I~Vd~~~~t-s~p~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~  349 (480)
T 3cgb_A          273 LVLVSVGVKPNTDFLEGTNI--RTNHKGAIEVNAYMQT-NVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRLAGLN  349 (480)
T ss_dssp             EEEECSCEEESCGGGTTSCC--CBCTTSCBCCCTTSBC-SSTTEEECGGGBCEEBTTTCSEECCCCHHHHHHHHHHHHHH
T ss_pred             EEEECcCCCcChHHHHhCCc--ccCCCCCEEECCCccC-CCCCEEEeeeEEEecCCCCCcceecchHHHHHHHHHHHHHH
Confidence            99999999999888876655  6678899999999999 7999999999996532        24688999999999999


Q ss_pred             HHHHHcCCCCCCccccc-------cCCCeEEEeecCCccee--------EecCc----cccCccceeeeccccchhHHHH
Q 017664          299 LKKLMMGRNKGTMATYK-------PGYPIALVSLGRREGVA--------HFPFL----TISGRIPGWIKSRDLFVGKTRK  359 (368)
Q Consensus       299 i~~~l~g~~~~~~~~~~-------~~~~~~~~~~g~~~~~~--------~~~~~----~~~~~~~~~~k~~~~~~~~~~~  359 (368)
                      |.    |... +...+.       ..++++.+|+.+.++..        .+...    ...+...+++|+  ++++++++
T Consensus       350 i~----g~~~-~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~kl--~~~~~~~~  422 (480)
T 3cgb_A          350 ML----DKRR-AFKGTLGTGIIKFMNLTLARTGLNEKEAKGLHIPYKTVKVDSTNMAGYYPNAKPLYLKL--LYRSDTKQ  422 (480)
T ss_dssp             HT----TCCC-CCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCEEEEEEEEESSCTTSTTCCEEEEEE--EEETTTCB
T ss_pred             hc----CCCc-cCCCccceeEEEECCcEEEEeCCCHHHHHHcCCceEEEEEecCCcccccCCCceEEEEE--EEECCCCE
Confidence            97    3321 111111       24567777877654421        11111    122445678998  99999999


Q ss_pred             HcCCCC
Q 017664          360 QLGLKP  365 (368)
Q Consensus       360 ~lG~~~  365 (368)
                      |||+|+
T Consensus       423 ilG~~~  428 (480)
T 3cgb_A          423 LLGGQV  428 (480)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999986

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=100.00  E-value=8.6e-42  Score=317.27  Aligned_cols=270  Identities=20%  Similarity=0.320  Sum_probs=213.0

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeeccccc-ccceeeccccc--CceeEEEe-EE
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFA-VRSVINHGDYL--SNVKIVVS-TA   87 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~-~~   87 (368)
                      ..++++|+|||||+||++||..|+ .+.+|+|||+++.+++....+......... .+......+++  .+++++.. ++
T Consensus         6 ~~~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V   85 (385)
T 3klj_A            6 HHKSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFA   85 (385)
T ss_dssp             --CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCE
T ss_pred             ccCCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEE
Confidence            345789999999999999999996 489999999999887654444333322211 12222222222  26777654 67


Q ss_pred             EEeec--cEEEecCCeEEEecEEEEecCCCCCCCCchH-------HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHH
Q 017664           88 VSITD--TEVVTAGGQTFVYDYVVVATGHVESVPKSRT-------ERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEI  158 (368)
Q Consensus        88 ~~~~~--~~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~-------~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l  158 (368)
                      ..+++  +++.+.+++.+.||+||+|||++|..|++++       ....+.....+.+..+++++|||+|++|+|+|..|
T Consensus        86 ~~id~~~~~v~~~~g~~~~yd~lvlAtG~~p~~p~i~G~~~v~~~~~~~d~~~l~~~l~~~~~vvVIGgG~~g~E~A~~l  165 (385)
T 3klj_A           86 TSIDPNNKLVTLKSGEKIKYEKLIIASGSIANKIKVPHADEIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAI  165 (385)
T ss_dssp             EEEETTTTEEEETTSCEEECSEEEECCCEEECCCCCTTCSCEECCSSHHHHHHHHHHHHHHSCEEEECCSHHHHHHHHHH
T ss_pred             EEEECCCCEEEECCCCEEECCEEEEecCCCcCCCCCCCCCCeEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHH
Confidence            78875  4888999999999999999999976665432       12344444444455689999999999999999999


Q ss_pred             hhhCCCCeEEEEecCcccccc-cCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCCcEEecCEEEEccCCCCC
Q 017664          159 AVDFPDKKVILVHRGPKLLEF-VGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMA  237 (368)
Q Consensus       159 ~~~~~~~~v~~i~~~~~~l~~-~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~  237 (368)
                      .+.  +.+|+++++.+++++. +++.+.+.+.+.+++.||++++++.+.++           |+++++|.+|+++|++|+
T Consensus       166 ~~~--g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i-----------g~~~~~D~vv~a~G~~p~  232 (385)
T 3klj_A          166 IDS--GTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM-----------GDLIRSSCVITAVGVKPN  232 (385)
T ss_dssp             HHH--TCCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEECSCCGGGC-----------HHHHHHSEEEECCCEEEC
T ss_pred             HhC--CCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCCCEEEeCCEEEEc-----------CeEEecCeEEECcCcccC
Confidence            864  7899999999998885 88999999999999999999999988765           567999999999999999


Q ss_pred             chhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCc--cchHHHHHHHHHHHHHHHH
Q 017664          238 SSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPE--IKQGYLAQKHALVTAKNLK  300 (368)
Q Consensus       238 ~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~--~~~~~~a~~~g~~aa~~i~  300 (368)
                      .+++...++  ..+ +| +.||+++|| +.|+|||+|||+..+.  ++++..|.+||+.||+||+
T Consensus       233 ~~~~~~~gl--~~~-~g-i~vd~~~~t-~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~  292 (385)
T 3klj_A          233 LDFIKDTEI--ASK-RG-ILVNDHMET-SIKDIYACGDVAEFYGKNPGLINIANKQGEVAGLNAC  292 (385)
T ss_dssp             CGGGTTSCC--CBS-SS-EEECTTCBC-SSTTEEECGGGEEETTBCCCCHHHHHHHHHHHHHHHT
T ss_pred             hhhhhhcCC--CcC-CC-EEECCCccc-CCCCEEEEEeeEecCCCcccHHHHHHHHHHHHHHHhc
Confidence            999887766  343 45 999999999 8999999999997542  4578899999999999998

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=5.9e-42  Score=326.28  Aligned_cols=334  Identities=19%  Similarity=0.259  Sum_probs=240.9

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccce---e----------------------eee---cccc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASL---R----------------------AVV---EPSF   65 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~---~----------------------~~~---~~~~   65 (368)
                      .++|++||||||||++||.+|++ |++|+|||+ +.+|+.|...   .                      ...   ...+
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~   82 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRL   82 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccCCCcc
Confidence            35899999999999999999984 999999999 4454332100   0                      000   0000


Q ss_pred             cccceeec------------cccc--CceeEEEeEEEEeeccEEEecCCeEEEecEEEEecCCCCCCCC-chHH-HHHHH
Q 017664           66 AVRSVINH------------GDYL--SNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPK-SRTE-RLSQY  129 (368)
Q Consensus        66 ~~~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~p~-~~~~-~~~~~  129 (368)
                      ....+..+            .+++  .+++++.+.+..++++++.+.+ ..++||+||||||++|..|+ ++.. .+.+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~-~~~~~d~lviATGs~p~~~~~~~~~~~v~~~  161 (458)
T 1lvl_A           83 DIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDG-QRIQCEHLLLATGSSSVELPMLPLGGPVISS  161 (458)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEEETT-EEEECSEEEECCCEEECCBTTBCCBTTEECH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEccCCEEEEee-EEEEeCEEEEeCCCCCCCCCCCCccCcEecH
Confidence            00000000            0111  2678888877778888888765 78999999999999976654 3311 12222


Q ss_pred             HHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecc
Q 017664          130 EKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNT  209 (368)
Q Consensus       130 ~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~  209 (368)
                      .........+++++|||+|++|+|+|..|.+  .+.+|+++++.+++++.+++++.+.+.+.+++.||++++++.|.+++
T Consensus       162 ~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~  239 (458)
T 1lvl_A          162 TEALAPKALPQHLVVVGGGYIGLELGIAYRK--LGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYE  239 (458)
T ss_dssp             HHHTCCSSCCSEEEEECCSHHHHHHHHHHHH--HTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEEEEEE
T ss_pred             HHHhhhhccCCeEEEECcCHHHHHHHHHHHH--CCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEECCEEEEEE
Confidence            2222222247899999999999999999986  48899999999999998899999999999999999999999999988


Q ss_pred             cCCC-eEEcCCC--cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHH
Q 017664          210 ISDG-LIETSSG--ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGY  286 (368)
Q Consensus       210 ~~~~-~v~~~~g--~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~  286 (368)
                      . ++ .+...+|  +++++|.+|+|+|++|+.+++....+++.++++ ++.||+++|+ +.|+|||+|||+..+  ++++
T Consensus       240 ~-~~v~v~~~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~-~i~vd~~~~t-~~~~Iya~GD~~~~~--~~~~  314 (458)
T 1lvl_A          240 N-GCLLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGA-AIAIDERCQT-SMHNVWAIGDVAGEP--MLAH  314 (458)
T ss_dssp             T-TEEEEECSSSCCCEECCSCEEECCCEEECCSSSSGGGSCCCEETT-EECCCTTCBC-SSTTEEECGGGGCSS--CCHH
T ss_pred             e-CCEEEEECCCceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCC-EEeECCCCcC-CCCCEEEeeccCCCc--ccHH
Confidence            6 43 3443456  689999999999999998764223333456666 8999999997 899999999999865  3789


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCccccc-------cCCCeEEEeecCCccee--------EecCc-----cccCcccee
Q 017664          287 LAQKHALVTAKNLKKLMMGRNKGTMATYK-------PGYPIALVSLGRREGVA--------HFPFL-----TISGRIPGW  346 (368)
Q Consensus       287 ~a~~~g~~aa~~i~~~l~g~~~~~~~~~~-------~~~~~~~~~~g~~~~~~--------~~~~~-----~~~~~~~~~  346 (368)
                      .|.+||+.+|+||.    |.+. + ..|.       ..|+++.+|+.+.++..        .+++.     ...+...++
T Consensus       315 ~A~~~g~~aa~~i~----g~~~-~-~~~~~~p~~~~~~p~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~  388 (458)
T 1lvl_A          315 RAMAQGEMVAEIIA----GKAR-R-FEPAAIAAVCFTDPEVVVVGKTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGF  388 (458)
T ss_dssp             HHHHHHHHHHHHHT----TCCC-C-CCCSCCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCE
T ss_pred             HHHHHHHHHHHHhc----CCCc-c-CCCCCCCEEEECCCCeEEEeCCHHHHHHcCCCEEEEEEECccchhhhhcCCCcEE
Confidence            99999999999997    3321 1 1121       14677878876654421        12211     123555789


Q ss_pred             eeccccchhHHHHHcCCCC
Q 017664          347 IKSRDLFVGKTRKQLGLKP  365 (368)
Q Consensus       347 ~k~~~~~~~~~~~~lG~~~  365 (368)
                      +|+  ++++++++|||+|+
T Consensus       389 ~kl--~~d~~~~~ilG~~~  405 (458)
T 1lvl_A          389 VRV--VARRDNHLILGWQA  405 (458)
T ss_dssp             EEE--EEETTTCBEEEEEE
T ss_pred             EEE--EEECCCCEEEEEEE
Confidence            998  99999999999986

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=100.00  E-value=5e-40  Score=310.49  Aligned_cols=314  Identities=21%  Similarity=0.268  Sum_probs=224.9

Q ss_pred             CcEEEECCChHHHHHHHHhhc---CCcEEEEcCCCceeeeccceeeeecccccccceeecccccC--ceeEEEeEEEEee
Q 017664           17 KKVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLS--NVKIVVSTAVSIT   91 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   91 (368)
                      ++|||||||+||+++|.+|++   +++|+|||+++++.+.+.......+.....+...+..+++.  ++++++++++.+|
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~~v~~Id   82 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINEKAESID   82 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECSCEEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEeEEEEEE
Confidence            479999999999999999973   58999999999887654322111111112233444455443  6899999999998


Q ss_pred             c--cEEEecCCeEEEecEEEEecCCCC--CCCCchH--------HHHHHHHHHHHHHhcCCeEEEEcCch------hHHH
Q 017664           92 D--TEVVTAGGQTFVYDYVVVATGHVE--SVPKSRT--------ERLSQYEKDFEKVKSANSVLIVGGGP------TGVE  153 (368)
Q Consensus        92 ~--~~v~~~~g~~~~~d~lvlAtG~~~--~~p~~~~--------~~~~~~~~~~~~~~~~~~v~VvG~g~------~~~e  153 (368)
                      +  ++|.+.+|++++||+||||||+++  .+|+...        ++.....+....+...+.++|+|++.      .+.|
T Consensus        83 ~~~~~V~~~~g~~i~YD~LViAtG~~~~~~i~G~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~vv~gg~~gve~~~~~~e  162 (430)
T 3hyw_A           83 PDANTVTTQSGKKIEYDYLVIATGPKLVFGAEGQEENSTSICTAEHALETQKKLQELYANPGPVVIGAIPGVSCFGPAYE  162 (430)
T ss_dssp             TTTTEEEETTCCEEECSEEEECCCCEEECCSBTHHHHSCCCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHH
T ss_pred             CCCCEEEECCCCEEECCEEEEeCCCCccCCccCcccCcCCcccHHHHHHHHHHHHhhccCCceEEEeCCCcEEEhHHHHH
Confidence            5  489999999999999999999983  3555321        12222233333344456667776653      2334


Q ss_pred             HHHHH----hhhC--CCCeEEEEecCccccc---ccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCC--cE
Q 017664          154 LAGEI----AVDF--PDKKVILVHRGPKLLE---FVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSG--ET  222 (368)
Q Consensus       154 ~a~~l----~~~~--~~~~v~~i~~~~~~l~---~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g--~~  222 (368)
                      ++..+    .++.  ...+|++++..+.+.+   ...+...+.+.+.++++||++++++.|++++.+...+...+|  ++
T Consensus       163 ~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~GV~~~~~~~v~~v~~~~~~~~~~~g~~~~  242 (430)
T 3hyw_A          163 FALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAVKAIEPDKVIYEDLNGNTHE  242 (430)
T ss_dssp             HHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEECSCEEEEECSSEEEEECTTSCEEE
T ss_pred             HHHHHHHHHHHhcccccceeeeecccchhhhccchhhHHHHHHHHHHHHhCCeEEEeCceEEEEeCCceEEEeeCCCceE
Confidence            44433    3221  1357888887765432   455677788899999999999999999988654324444444  58


Q ss_pred             EecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCC----------ccchHHHHHHHH
Q 017664          223 IDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIP----------EIKQGYLAQKHA  292 (368)
Q Consensus       223 i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~----------~~~~~~~a~~~g  292 (368)
                      +++|.+++++|.+|+ +++...+..+..+.+|++.||++||++++|||||+|||+..|          .|++++.|.+||
T Consensus       243 i~~d~vi~~~G~~~~-~~~~~~~~~l~~~~~g~i~vd~~lq~t~~~~IfAiGD~a~~p~~~~~~~~~~~pk~a~~A~~qg  321 (430)
T 3hyw_A          243 VPAKFTMFMPSFQGP-EVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMA  321 (430)
T ss_dssp             EECSEEEEECEEECC-HHHHTTCTTTBCTTTCCBCCCTTSBCSSSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHH
T ss_pred             eecceEEEeccCCCc-hHHHhcccccccCCceEEEecccccCCCCCCEEEeccEEecCCcccCcCcCccchHHHHHHHHH
Confidence            999999999999986 566666655455667889999999987999999999999865          357899999999


Q ss_pred             HHHHHHHHHHHcCCCCCCccccccCCCeEEEeecCCcceeEe
Q 017664          293 LVTAKNLKKLMMGRNKGTMATYKPGYPIALVSLGRREGVAHF  334 (368)
Q Consensus       293 ~~aa~~i~~~l~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  334 (368)
                      +++|+||.+.+.|++..   .+......+++++|...++...
T Consensus       322 ~~~A~Ni~~~l~g~~~~---~~~~~~~~~~~~~G~~~~~~~~  360 (430)
T 3hyw_A          322 MAVAHNIVNDIRNNPDK---YAPRLSAICIADFGEDAGFFFA  360 (430)
T ss_dssp             HHHHHHHHHHHTTCCCC---EEECCCEEEEEECSSSEEEEEE
T ss_pred             HHHHHHHHHHhcCCCCC---cccCCcEEEEEEcCCCcEEEEE
Confidence            99999999999998642   1111245788899988777643

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=100.00  E-value=6.3e-41  Score=318.53  Aligned_cols=335  Identities=20%  Similarity=0.285  Sum_probs=240.2

Q ss_pred             CcEEEECCChHHHHHHHHhhc---CCcEEEEcCCCceeeeccceeeeecccc--cccceeeccccc--CceeEE-EeEEE
Q 017664           17 KKVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYFEITWASLRAVVEPSF--AVRSVINHGDYL--SNVKIV-VSTAV   88 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~-~~~~~   88 (368)
                      +||+|||||+||+++|..|++   |.+|+|||+++.+++....+........  ..+......+++  .+++++ ...+.
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~   80 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT   80 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccccchhhhcCccCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            489999999999999999974   8999999999877654332221111111  011111111111  256764 44565


Q ss_pred             Eee--ccEEEecC---Ce--EEEecEEEEecCCCCCCCCchH---H------HHHHHHHHHHHHh--cCCeEEEEcCchh
Q 017664           89 SIT--DTEVVTAG---GQ--TFVYDYVVVATGHVESVPKSRT---E------RLSQYEKDFEKVK--SANSVLIVGGGPT  150 (368)
Q Consensus        89 ~~~--~~~v~~~~---g~--~~~~d~lvlAtG~~~~~p~~~~---~------~~~~~~~~~~~~~--~~~~v~VvG~g~~  150 (368)
                      .++  .+.+.+.+   |+  .++||+||+|||+.|..|++++   .      .+.+.....+.+.  .+++++|||+|++
T Consensus        81 ~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvIiG~G~~  160 (447)
T 1nhp_A           81 AIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYI  160 (447)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCSTTTTSBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHH
T ss_pred             EEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHhhhcCCCeEEEECCCHH
Confidence            665  34665543   54  4899999999999976665432   1      2233333333344  6899999999999


Q ss_pred             HHHHHHHHhhhCCCCeEEEEecCccccc-ccCchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCE
Q 017664          151 GVELAGEIAVDFPDKKVILVHRGPKLLE-FVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDC  227 (368)
Q Consensus       151 ~~e~a~~l~~~~~~~~v~~i~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~  227 (368)
                      |+|+|..+.+  .+.+|+++++.+++++ .+++++.+.+.+.+++.||++++++.|.+++.++.  .+.+ +++++++|.
T Consensus       161 g~e~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~v~~v~~-~~~~i~~d~  237 (447)
T 1nhp_A          161 GIEAAEAFAK--AGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVT-DKNAYDADL  237 (447)
T ss_dssp             HHHHHHHHHH--TTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEEEE-SSCEEECSE
T ss_pred             HHHHHHHHHH--CCCeEEEEecCcccccccCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEccCcEEEEEE-CCCEEECCE
Confidence            9999999885  4889999999998888 68889999999999999999999999998886643  3555 456899999


Q ss_pred             EEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCc--------cchHHHHHHHHHHHHHHH
Q 017664          228 HFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPE--------IKQGYLAQKHALVTAKNL  299 (368)
Q Consensus       228 vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~--------~~~~~~a~~~g~~aa~~i  299 (368)
                      +|+|+|.+|+.+++... +  .++++|++.||+++|| +.|+|||+|||+..+.        +.+++.|.+||+.+|+||
T Consensus       238 vi~a~G~~p~~~~~~~~-~--~~~~~G~i~Vd~~~~t-~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i  313 (447)
T 1nhp_A          238 VVVAVGVRPNTAWLKGT-L--ELHPNGLIKTDEYMRT-SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL  313 (447)
T ss_dssp             EEECSCEEESCGGGTTT-S--CBCTTSCBCCCTTCBC-SSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTS
T ss_pred             EEECcCCCCChHHHHhh-h--hhcCCCcEEECccccC-CCCCEEEeeeEEEeeccCCCCceechhHHHHHHHHHHHHHhh
Confidence            99999999998887654 4  5677899999999999 8999999999997532        247899999999999999


Q ss_pred             HHHHcCCCCCCccccc-------cCCCeEEEeecCCccee--------Ee---cCccc-cCccceeeeccccchhHHHHH
Q 017664          300 KKLMMGRNKGTMATYK-------PGYPIALVSLGRREGVA--------HF---PFLTI-SGRIPGWIKSRDLFVGKTRKQ  360 (368)
Q Consensus       300 ~~~l~g~~~~~~~~~~-------~~~~~~~~~~g~~~~~~--------~~---~~~~~-~~~~~~~~k~~~~~~~~~~~~  360 (368)
                      .    |.+.. ...+.       ..+.++.+|+.+.++..        .+   ....+ .+...+++|+  ++++++++|
T Consensus       314 ~----g~~~~-~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~--~~~~~~~~i  386 (447)
T 1nhp_A          314 E----EPVKP-FPGVQGSSGLAVFDYKFASTGINEVMAQKLGKETKAVTVVEDYLMDFNPDKQKAWFKL--VYDPETTQI  386 (447)
T ss_dssp             S----SCCCC-CCCBCCCEEEEETTEEEEEEECCHHHHHHHTCCCEEEEEEEESSCTTCTTCCEEEEEE--EECTTTCBE
T ss_pred             c----CCCCC-CCCccccEEEEECCeeeEEecCCHHHHHHcCCceEEEEEEcCCccccCCCCceEEEEE--EEECCCCEE
Confidence            7    43211 11111       23567777776655431        11   11111 2445688998  999999999


Q ss_pred             cCCCC
Q 017664          361 LGLKP  365 (368)
Q Consensus       361 lG~~~  365 (368)
                      ||+|+
T Consensus       387 lG~~~  391 (447)
T 1nhp_A          387 LGAQL  391 (447)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99986

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=100.00  E-value=7.4e-42  Score=325.67  Aligned_cols=337  Identities=22%  Similarity=0.299  Sum_probs=245.1

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeecccee----------------------ee-e-cccccccce
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLR----------------------AV-V-EPSFAVRSV   70 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~----------------------~~-~-~~~~~~~~~   70 (368)
                      ++||+||||||||+++|.+|++ |++|+|||+++.+|+.+....                      .. . ........+
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   80 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVKGVELDLPAL   80 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEEECCEEECHHHH
T ss_pred             CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhhhcCCcccCCCccCHHHH
Confidence            3799999999999999999984 999999999977664321100                      00 0 000000000


Q ss_pred             ee------------ccccc--CceeEEEeEEEEeeccEEEec-CCeEEEecEEEEecCCCCCCCCch---HHHHHHHHHH
Q 017664           71 IN------------HGDYL--SNVKIVVSTAVSITDTEVVTA-GGQTFVYDYVVVATGHVESVPKSR---TERLSQYEKD  132 (368)
Q Consensus        71 ~~------------~~~~~--~~~~~~~~~~~~~~~~~v~~~-~g~~~~~d~lvlAtG~~~~~p~~~---~~~~~~~~~~  132 (368)
                      ..            ..+++  .+++++.+.+..++++.+... ++..+.||+||+|||+.|..|++.   ...+.+....
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~g~~~~~d~lviAtG~~p~~~~~~g~~~~~v~~~~~~  160 (455)
T 2yqu_A           81 MAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLSERKVLVEETGEELEARYILIATGSAPLIPPWAQVDYERVVTSTEA  160 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETTTCCEEEEEEEEECCCEEECCCTTBCCCSSSEECHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEeeCCEEEEecEEEECCCCCCCCCCCCCCCcCcEechHHh
Confidence            00            01111  257888887777777765543 567899999999999997666532   2122223322


Q ss_pred             HHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCC
Q 017664          133 FEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISD  212 (368)
Q Consensus       133 ~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~  212 (368)
                      ......+++++|||+|++|+|+|..+.+  .+.+|+++++.+++++..++++.+.+.+.+++.||+++++++|++++.++
T Consensus       161 ~~~~~~~~~vvIiGgG~~g~e~A~~l~~--~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~  238 (455)
T 2yqu_A          161 LSFPEVPKRLIVVGGGVIGLELGVVWHR--LGAEVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPEA  238 (455)
T ss_dssp             TCCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEEET
T ss_pred             hccccCCCeEEEECCCHHHHHHHHHHHH--cCCEEEEEecCCccccccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeC
Confidence            2222347899999999999999999985  48899999999999998899999999999999999999999999998765


Q ss_pred             C--eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHH
Q 017664          213 G--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQK  290 (368)
Q Consensus       213 ~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~  290 (368)
                      +  .+.+.+|+++++|.+|+|+|.+|+.+++....+++.++++|++.||+++|+ +.|+|||+|||+..+  ++++.|.+
T Consensus       239 ~~v~v~~~~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~~~~t-~~~~iya~GD~~~~~--~~~~~A~~  315 (455)
T 2yqu_A          239 KGARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRT-RVPHIYAIGDVVRGP--MLAHKASE  315 (455)
T ss_dssp             TEEEEEETTSCEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCTTSBC-SSTTEEECGGGSSSC--CCHHHHHH
T ss_pred             CEEEEEECCCeEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECCCccc-CCCCEEEEecCCCCc--cCHHHHHH
Confidence            5  566678889999999999999999877432333446677899999999998 799999999999764  37889999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCccccc-------cCCCeEEEeecCCccee--------EecCc-----cccCccceeeecc
Q 017664          291 HALVTAKNLKKLMMGRNKGTMATYK-------PGYPIALVSLGRREGVA--------HFPFL-----TISGRIPGWIKSR  350 (368)
Q Consensus       291 ~g~~aa~~i~~~l~g~~~~~~~~~~-------~~~~~~~~~~g~~~~~~--------~~~~~-----~~~~~~~~~~k~~  350 (368)
                      ||+.+|+||..    ... + ..|.       ..|+++.+|+.+.++..        .+++.     ...+...+++|+ 
T Consensus       316 ~g~~aa~~i~~----~~~-~-~~~~~~p~~~~~~~~~a~~G~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~-  388 (455)
T 2yqu_A          316 EGIAAVEHMVR----GFG-H-VDYQAIPSVVYTHPEIAAVGYTEEELKAQGIPYKVGKFPYSASGRARAMGETEGFIKV-  388 (455)
T ss_dssp             HHHHHHHHHHH----SCC-C-CCGGGCCEEECSSSEEEEEECCHHHHHHHTCCEEEEEEEGGGCHHHHHHTCCCCEEEE-
T ss_pred             hHHHHHHHHcC----CCc-c-CCCCCCCEEEEcCCceEEEECCHHHHHHcCCCEEEEEEEcccchHHHhcCCCcEEEEE-
Confidence            99999999985    221 1 1121       14677888877655431        11111     123455788998 


Q ss_pred             ccchhHHHHHcCCCC
Q 017664          351 DLFVGKTRKQLGLKP  365 (368)
Q Consensus       351 ~~~~~~~~~~lG~~~  365 (368)
                       ++++++++|||+|+
T Consensus       389 -~~~~~~~~ilG~~~  402 (455)
T 2yqu_A          389 -LAHAKTDRILGVHG  402 (455)
T ss_dssp             -EEETTTCBEEEEEE
T ss_pred             -EEECCCCEEEEEEE
Confidence             99999999999986

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=100.00  E-value=8.3e-41  Score=314.04  Aligned_cols=277  Identities=25%  Similarity=0.333  Sum_probs=218.8

Q ss_pred             CcEEEECCChHHHHHHHHhhc-CCc--EEEEcCCCceeeeccceee-eecccccccceeeccccc--CceeEEEe-EEEE
Q 017664           17 KKVVVIGGGVGGSLLAYHIQS-FAD--VVLIDEKEYFEITWASLRA-VVEPSFAVRSVINHGDYL--SNVKIVVS-TAVS   89 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~~-g~~--v~lie~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~   89 (368)
                      ++|+|||||+||++||..|++ |++  |+|||+++.+++....+.. ..........+....+++  .+++++.. ++..
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   82 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVTA   82 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCBSSCTTHHHHTTCEEEESCCEEE
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHhcCCHHHHHHCCCEEEeCCEEEE
Confidence            589999999999999999984 766  9999999987765433322 111111111111222222  26788877 7888


Q ss_pred             eecc--EEEecCCeEEEecEEEEecCCCCCCCCchH---H------HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHH
Q 017664           90 ITDT--EVVTAGGQTFVYDYVVVATGHVESVPKSRT---E------RLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEI  158 (368)
Q Consensus        90 ~~~~--~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~---~------~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l  158 (368)
                      ++..  .+.+.+++.+.||+||+|||+.|..|++++   .      ...+.....+.+..+++++|||+|++|+|+|..+
T Consensus        83 id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~ipG~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~E~A~~l  162 (410)
T 3ef6_A           83 LDVQTRTISLDDGTTLSADAIVIATGSRARTMALPGSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTA  162 (410)
T ss_dssp             EETTTTEEEETTSCEEECSEEEECCCEEECCCCCTTTTSTTEECCCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHH
T ss_pred             EECCCCEEEECCCCEEECCEEEEccCCcccCCCCCCccccceEEeccHHHHHHHHHHhccCCeEEEECCCHHHHHHHHHH
Confidence            8854  888889999999999999999976654332   1      2344444444455689999999999999999999


Q ss_pred             hhhCCCCeEEEEecCccccc-ccCchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCC
Q 017664          159 AVDFPDKKVILVHRGPKLLE-FVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       159 ~~~~~~~~v~~i~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      .+  .+.+|+++++.+++++ .+++++.+.+.+.+++.||++++++.|.+++.++.  .+++.+|+++++|.||+|+|.+
T Consensus       163 ~~--~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~  240 (410)
T 3ef6_A          163 RK--LGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAE  240 (410)
T ss_dssp             HH--TTCEEEEECSSSSSSHHHHCHHHHHHHHHHHHHHTCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCEE
T ss_pred             Hh--CCCeEEEEecCCccchhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCCe
Confidence            85  5889999999998876 47889999999999999999999999999887654  6889999999999999999999


Q ss_pred             CCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCcc-------chHHHHHHHHHHHHHHHH
Q 017664          236 MASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEI-------KQGYLAQKHALVTAKNLK  300 (368)
Q Consensus       236 p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~-------~~~~~a~~~g~~aa~~i~  300 (368)
                      |+.+++...++  ..+ +| +.||+++|| +.|+|||+|||+..+.+       +++..|..||+.||+||.
T Consensus       241 p~~~l~~~~gl--~~~-~g-i~vd~~~~t-~~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~  307 (410)
T 3ef6_A          241 PADQLARQAGL--ACD-RG-VIVDHCGAT-LAKGVFAVGDVASWPLRAGGRRSLETYMNAQRQAAAVAAAIL  307 (410)
T ss_dssp             ECCHHHHHTTC--CBS-SS-EECCTTSBC-SSTTEEECGGGEEEEBTTSSEECCCCHHHHHHHHHHHHHHHT
T ss_pred             ecHHHHHhCCC--ccC-Ce-EEEccCeeE-CCCCEEEEEcceeccCCCCCeeeechHHHHHHHHHHHHHHHc
Confidence            99999887776  444 44 999999998 89999999999976542       347899999999999998

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=100.00  E-value=2.8e-40  Score=308.13  Aligned_cols=334  Identities=18%  Similarity=0.207  Sum_probs=233.2

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhhc-C--CcEEEEcCCCceeeeccceeeeecccc-cccceee-ccccc--CceeEEE-
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQS-F--ADVVLIDEKEYFEITWASLRAVVEPSF-AVRSVIN-HGDYL--SNVKIVV-   84 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~~-g--~~v~lie~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~--~~~~~~~-   84 (368)
                      |+.++||+|||||+||+++|.+|++ |  .+|+|+|+++...+....+........ ..+.... ...++  .+++++. 
T Consensus         1 M~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   80 (384)
T 2v3a_A            1 MSERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLAMAEPGAMAEQLNARILTH   80 (384)
T ss_dssp             ---CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCEECGGGGGGTTTTTCCHHHHEEECHHHHHHHTTCEEECS
T ss_pred             CCCCCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCCCccCcccccHHHhCCCCHHHhhccCHHHHHHhCCcEEEeC
Confidence            3456899999999999999999984 5  679999998743322222211111111 1111111 11111  2567764 


Q ss_pred             eEEEEeec--cEEEecCCeEEEecEEEEecCCCCCCCCchH---------HHHHHHHHHHHHHhcCCeEEEEcCchhHHH
Q 017664           85 STAVSITD--TEVVTAGGQTFVYDYVVVATGHVESVPKSRT---------ERLSQYEKDFEKVKSANSVLIVGGGPTGVE  153 (368)
Q Consensus        85 ~~~~~~~~--~~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~---------~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e  153 (368)
                      ..+..++.  +++.+. +..+.||+||+|||+.|..|+++.         ..+.++......+..+++++|+|+|++|+|
T Consensus        81 ~~v~~i~~~~~~v~~~-~~~~~~d~lviAtG~~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~v~ViGgG~~g~e  159 (384)
T 2v3a_A           81 TRVTGIDPGHQRIWIG-EEEVRYRDLVLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCE  159 (384)
T ss_dssp             CCCCEEEGGGTEEEET-TEEEECSEEEECCCEEECCCCCBSTTTTCEEECSSHHHHHHHHHHHTTCCEEEEECCSHHHHH
T ss_pred             CEEEEEECCCCEEEEC-CcEEECCEEEEeCCCCcCCCCCCCcCcCCEEEECCHHHHHHHHHhhccCCeEEEECCCHHHHH
Confidence            35666664  577765 457999999999999977665432         223444444445556899999999999999


Q ss_pred             HHHHHhhhCCCCeEEEEecCcccccc-cCchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEE
Q 017664          154 LAGEIAVDFPDKKVILVHRGPKLLEF-VGSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFM  230 (368)
Q Consensus       154 ~a~~l~~~~~~~~v~~i~~~~~~l~~-~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~  230 (368)
                      +|..+.+  .+.+|+++++.+++++. .++.+.+.+.+.+++.||++++++.|.+++.+++  .+.+.+|+++++|.+|+
T Consensus       160 ~A~~l~~--~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~  237 (384)
T 2v3a_A          160 FANDLSS--GGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVS  237 (384)
T ss_dssp             HHHHHHH--TTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEE
T ss_pred             HHHHHHh--CCCeEEEEecCcchhhcccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEE
Confidence            9999985  48899999999988875 4788899999999999999999999999876554  67788999999999999


Q ss_pred             ccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCc--cchHHHHHHHHHHHHHHHHHHHcCCCC
Q 017664          231 CTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPE--IKQGYLAQKHALVTAKNLKKLMMGRNK  308 (368)
Q Consensus       231 a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~--~~~~~~a~~~g~~aa~~i~~~l~g~~~  308 (368)
                      |+|.+|+.+++...++  ..+ +| +.||+++|| +.|||||+|||+..+.  ......|.+||+.+|+||.    |++.
T Consensus       238 a~G~~p~~~l~~~~g~--~~~-~g-i~vd~~~~t-~~~~IyA~GD~~~~~~~~~~~~~~a~~~g~~~a~~i~----g~~~  308 (384)
T 2v3a_A          238 AVGLRPRTELAFAAGL--AVN-RG-IVVDRSLRT-SHANIYALGDCAEVDGLNLLYVMPLMACARALAQTLA----GNPS  308 (384)
T ss_dssp             CSCEEECCHHHHHTTC--CBS-SS-EEECTTCBC-SSTTEEECGGGEEETTBCCCSHHHHHHHHHHHHHHHT----TCCC
T ss_pred             CcCCCcCHHHHHHCCC--CCC-CC-EEECCCCCC-CCCCEEEeeeeeeECCCCcchHHHHHHHHHHHHHHhc----CCCc
Confidence            9999999888776665  455 57 999999998 8999999999985322  2346778999999999997    4321


Q ss_pred             C----Cc--cccccCCCeEEEeecCCcceeEecCccccCccceeeeccccchhHHHHHcCCCC
Q 017664          309 G----TM--ATYKPGYPIALVSLGRREGVAHFPFLTISGRIPGWIKSRDLFVGKTRKQLGLKP  365 (368)
Q Consensus       309 ~----~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~lG~~~  365 (368)
                      .    ..  ..|++...+..+++...+.    ..+...+...++.|+  +++ ++++|||+++
T Consensus       309 ~~~~~~~p~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~g~~~~--~~~-~~~~i~G~~~  364 (384)
T 2v3a_A          309 QVAYGPMPVTVKTPACPLVVSPPPRGMD----GQWLVEGSGTDLKVL--CRD-TAGRVIGYAL  364 (384)
T ss_dssp             CCCCCCCCEEECCTTSCEEEECCCTTCC----CEEEEEEETTEEEEE--EEC-TTSCEEEEEE
T ss_pred             cCCCCCcceEEEECCeeEEEecCCCCCC----ceEEEEecCCcEEEE--EEc-cCCEEEEEEE
Confidence            1    00  1123333444444332210    111123344577776  666 6799999986

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=6.3e-39  Score=301.95  Aligned_cols=280  Identities=20%  Similarity=0.238  Sum_probs=220.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhc-CCc--EEEEcCCCceeeecccee-eeecccc-cccceeeccccc--CceeEEEe-
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQS-FAD--VVLIDEKEYFEITWASLR-AVVEPSF-AVRSVINHGDYL--SNVKIVVS-   85 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~-g~~--v~lie~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~--~~~~~~~~-   85 (368)
                      ++++||+|||||+||+++|..|++ |++  |+|||+++.+++....+. ....... .........+++  .++++... 
T Consensus         7 ~~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   86 (415)
T 3lxd_A            7 AERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQFWEDKAVEMKLGA   86 (415)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBSSCHHHHHHTTEEEEETC
T ss_pred             CCCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhccCCHHHHHHCCcEEEeCC
Confidence            456899999999999999999984 766  999999998766543332 1111111 111111112221  26778776 


Q ss_pred             EEEEeecc--EEEecCCeEEEecEEEEecCCCCCCCCchH---------HHHHHHHHHHHHHhc-CCeEEEEcCchhHHH
Q 017664           86 TAVSITDT--EVVTAGGQTFVYDYVVVATGHVESVPKSRT---------ERLSQYEKDFEKVKS-ANSVLIVGGGPTGVE  153 (368)
Q Consensus        86 ~~~~~~~~--~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~---------~~~~~~~~~~~~~~~-~~~v~VvG~g~~~~e  153 (368)
                      ++..+++.  .+.+.++..+.||+||+|||+.|..|+++.         ....+.......+.. +++++|||+|++|+|
T Consensus        87 ~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~~vvViGgG~~g~e  166 (415)
T 3lxd_A           87 EVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRLSCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLE  166 (415)
T ss_dssp             CEEEEETTTTEEEETTSCEEEEEEEEECCCEECCCCBTTSSCCBTEECCCSHHHHHHHHHHHHTTCCEEEEECCSHHHHH
T ss_pred             EEEEEECCCCEEEECCCCEEEeeEEEEccCCccCCCCCCCccccCEEEEcCHHHHHHHHHHhhhcCCeEEEECCCHHHHH
Confidence            78888754  788888999999999999999976654331         133444444445555 899999999999999


Q ss_pred             HHHHHhhhCCCCeEEEEecCccccc-ccCchhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCCcEEecCEEE
Q 017664          154 LAGEIAVDFPDKKVILVHRGPKLLE-FVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHF  229 (368)
Q Consensus       154 ~a~~l~~~~~~~~v~~i~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi  229 (368)
                      +|..+.+  .+.+|+++++.+++++ ..++.+.+.+.+.++++||++++++.|++++.+++   .+++.+|+++++|.||
T Consensus       167 ~A~~l~~--~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv  244 (415)
T 3lxd_A          167 AAAVLTK--FGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVI  244 (415)
T ss_dssp             HHHHHHH--TTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEE
T ss_pred             HHHHHHh--cCCeEEEEecCCchhhhhcCHHHHHHHHHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEE
Confidence            9999985  5889999999999887 47889999999999999999999999999987654   6888999999999999


Q ss_pred             EccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccc---------hHHHHHHHHHHHHHHHH
Q 017664          230 MCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIK---------QGYLAQKHALVTAKNLK  300 (368)
Q Consensus       230 ~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~---------~~~~a~~~g~~aa~~i~  300 (368)
                      +|+|.+|+.+++...++  ..+ +| +.||+++|| +.|+|||+|||+..+.+.         ++..|..||+.||+||+
T Consensus       245 ~a~G~~p~~~l~~~~gl--~~~-~g-i~vd~~~~t-~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~  319 (415)
T 3lxd_A          245 VGIGIVPCVGALISAGA--SGG-NG-VDVDEFCRT-SLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDIC  319 (415)
T ss_dssp             ECSCCEESCHHHHHTTC--CCS-SS-EECCTTCBC-SSTTEEECGGGEEEECGGGTTCEECCCSHHHHHHHHHHHHHHHT
T ss_pred             ECCCCccChHHHHhCCC--CcC-CC-EEECCCCCc-CCCCEEEEEeeeeecCcccCCcceeechHHHHHHHHHHHHHHhc
Confidence            99999999999887766  344 45 999999999 899999999999876533         35899999999999998

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=100.00  E-value=1e-39  Score=309.28  Aligned_cols=336  Identities=21%  Similarity=0.254  Sum_probs=233.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhc----CCcEEEEcCCCceeeeccceeeeecccccccceeeccccc--CceeEEEeEE
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQS----FADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYL--SNVKIVVSTA   87 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~----g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~   87 (368)
                      +.++||||||||+||+++|..|++    +++|+|||+++.+.+...............+......+++  .+++++.+.+
T Consensus         2 ~~m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~~~v   81 (437)
T 3sx6_A            2 RGSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIAQSA   81 (437)
T ss_dssp             TTSCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEECSCE
T ss_pred             CCCCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEEeEE
Confidence            346799999999999999999864    8999999999987654321111111111112222223222  3788888889


Q ss_pred             EEeecc--EEEecCCeEEEecEEEEecCCCCC---CCCchH--------HHHHHH---HHHHHHHhcCCeEEEEcCchhH
Q 017664           88 VSITDT--EVVTAGGQTFVYDYVVVATGHVES---VPKSRT--------ERLSQY---EKDFEKVKSANSVLIVGGGPTG  151 (368)
Q Consensus        88 ~~~~~~--~v~~~~g~~~~~d~lvlAtG~~~~---~p~~~~--------~~~~~~---~~~~~~~~~~~~v~VvG~g~~~  151 (368)
                      ..+++.  .+.+.+++.+.||+||+|||+.|.   +|+...        ..+.+.   ....+.....++++|||+|+++
T Consensus        82 ~~id~~~~~V~~~~g~~i~~d~lviAtG~~~~~~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~~  161 (437)
T 3sx6_A           82 EQIDAEAQNITLADGNTVHYDYLMIATGPKLAFENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGA  161 (437)
T ss_dssp             EEEETTTTEEEETTSCEEECSEEEECCCCEECGGGSTTCSTTTSSEECCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTC
T ss_pred             EEEEcCCCEEEECCCCEEECCEEEECCCCCcCcccCCCCCcccCcceecccccHHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            888864  788888988999999999999854   444321        112222   2222233336678899997654


Q ss_pred             ------HHHHHHHhhh--CCCC----e-EEEEecCccccc----ccCchhHHHHHHHHHcCCcEEEecceeeecccCCCe
Q 017664          152 ------VELAGEIAVD--FPDK----K-VILVHRGPKLLE----FVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGL  214 (368)
Q Consensus       152 ------~e~a~~l~~~--~~~~----~-v~~i~~~~~~l~----~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~  214 (368)
                            +|+|..+...  ..+.    + |+++++.+.+.+    .. ++....+.+.++++||++++++.|++++.+...
T Consensus       162 g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~-~~~~~~~~~~l~~~gI~~~~~~~v~~v~~~~v~  240 (437)
T 3sx6_A          162 SCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGV-GDSKGILTKGLKEEGIEAYTNCKVTKVEDNKMY  240 (437)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCC-TTHHHHHHHHHHHTTCEEECSEEEEEEETTEEE
T ss_pred             CcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccccCcc-hHHHHHHHHHHHHCCCEEEcCCEEEEEECCeEE
Confidence                  8888554421  1233    3 999999887632    22 357788899999999999999999988754222


Q ss_pred             EE--cCC-----CcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCC-------
Q 017664          215 IE--TSS-----GETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIP-------  280 (368)
Q Consensus       215 v~--~~~-----g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~-------  280 (368)
                      +.  ..+     ++++++|.+++++|+.++..+....++   .+++|++.||+++|++++|||||+|||+..+       
T Consensus       241 ~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~~~~gl---~~~~G~i~Vd~~l~t~~~~~Ifa~GD~~~~~~~~~~~~  317 (437)
T 3sx6_A          241 VTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGL---CNPGGFVLVDEHQRSKKYANIFAAGIAIAIPPVETTPV  317 (437)
T ss_dssp             EEEECTTSCEEEEEEEECSEEEEECCEECCHHHHTSTTT---BCTTSCBCBCTTSBBSSCTTEEECGGGBCCCCSCCCSS
T ss_pred             EEecccCCccccceEEEEeEEEEcCCCcCchhhhccccc---cCCCCcEEeChhccCCCCCCEEEEEEEeccCCcCCCcC
Confidence            22  223     568999999999999877555443444   5788999999999998899999999999865       


Q ss_pred             ---ccchHHHHHHHHHHHHHHHHHHHcCCCCCCccccccC-CCeEEEeecCCcceeEe-c----C---ccccCccceeee
Q 017664          281 ---EIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYKPG-YPIALVSLGRREGVAHF-P----F---LTISGRIPGWIK  348 (368)
Q Consensus       281 ---~~~~~~~a~~~g~~aa~~i~~~l~g~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~-~----~---~~~~~~~~~~~k  348 (368)
                         .+++++.|.+||+.+|+||.+.|.|++..   +|.|. ...+++.+|...++... +    .   +...|.+.+++|
T Consensus       318 ~~~~pk~~~~A~~qg~~aA~ni~~~l~g~~~~---~~~~~~~~~~~~~~G~~~~~~~~~~~~p~~~~~~~~~g~~~~~~K  394 (437)
T 3sx6_A          318 PTGAPKTGYMIESMVSAAVHNIKADLEGRKGE---QTMGTWNAVAFADMGDRGAAFIALPQLKPRKVDVFAYGRWVHLAK  394 (437)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHHHHHTTTSCCC---CCCCSCCEEEEEECSSCEEEEEEESSSSSCSEEEEEEEHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHhcCCCCC---CcccCcceEEEEEeCCCceEEEeCCCCCCcccccccccHHHHHHH
Confidence               36789999999999999999999998543   44443 35677888887655321 1    1   234566666777


Q ss_pred             ccccchhHHH
Q 017664          349 SRDLFVGKTR  358 (368)
Q Consensus       349 ~~~~~~~~~~  358 (368)
                      .  .+++.+.
T Consensus       395 ~--~~~~~f~  402 (437)
T 3sx6_A          395 V--AFEKYFI  402 (437)
T ss_dssp             H--HHHHHHH
T ss_pred             H--HHHHHHH
Confidence            5  5555443

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=100.00  E-value=2.4e-39  Score=303.68  Aligned_cols=278  Identities=19%  Similarity=0.252  Sum_probs=218.6

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-CC--cEEEEcCCCceeeecccee-eeecccc-cccceeeccccc--CceeEEEeEEE
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-FA--DVVLIDEKEYFEITWASLR-AVVEPSF-AVRSVINHGDYL--SNVKIVVSTAV   88 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g~--~v~lie~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~   88 (368)
                      ++||+|||||+||+++|..|++ |+  +|+|||+++..++....+. ....... .........+++  .++++...++.
T Consensus         1 ~k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~v~   80 (404)
T 3fg2_P            1 NDTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELISDRMV   80 (404)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEECCCEE
T ss_pred             CCCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEEEEEE
Confidence            3689999999999999999984 76  8999999997665433222 1111111 111111112221  26777767788


Q ss_pred             Eeecc--EEEecCCeEEEecEEEEecCCCCCCCCchH---------HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHH
Q 017664           89 SITDT--EVVTAGGQTFVYDYVVVATGHVESVPKSRT---------ERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGE  157 (368)
Q Consensus        89 ~~~~~--~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~---------~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~  157 (368)
                      .++..  .+.+.++..+.||+|++|||+.|..|+++.         ..+.+..........+++++|+|+|++|+|+|..
T Consensus        81 ~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~e~A~~  160 (404)
T 3fg2_P           81 SIDREGRKLLLASGTAIEYGHLVLATGARNRMLDVPNASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAAT  160 (404)
T ss_dssp             EEETTTTEEEESSSCEEECSEEEECCCEEECCCCSTTTTSTTEECCSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHH
T ss_pred             EEECCCCEEEECCCCEEECCEEEEeeCCCccCCCCCCCCCCcEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHH
Confidence            88754  788889999999999999999866554332         1344555555556678999999999999999999


Q ss_pred             HhhhCCCCeEEEEecCccccc-ccCchhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccC
Q 017664          158 IAVDFPDKKVILVHRGPKLLE-FVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTG  233 (368)
Q Consensus       158 l~~~~~~~~v~~i~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G  233 (368)
                      +.+  .+.+|+++++.+++++ .+++++.+.+.+.+++.||++++++.|.+++.+++   .+.+.+|+++++|.||+|+|
T Consensus       161 l~~--~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G  238 (404)
T 3fg2_P          161 ARA--KGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVG  238 (404)
T ss_dssp             HHH--TTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCC
T ss_pred             HHh--CCCEEEEEeCCCcchhhccCHHHHHHHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcC
Confidence            985  4889999999998887 47888999999999999999999999999887654   58899999999999999999


Q ss_pred             CCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccc--------hHHHHHHHHHHHHHHHH
Q 017664          234 KAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIK--------QGYLAQKHALVTAKNLK  300 (368)
Q Consensus       234 ~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~--------~~~~a~~~g~~aa~~i~  300 (368)
                      ++|+.+++...++  ..+ +| +.||+++|| +.|||||+|||+..+.+.        +...|..||+.||+||.
T Consensus       239 ~~p~~~l~~~~gl--~~~-~G-i~vd~~~~t-~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~  308 (404)
T 3fg2_P          239 VIPNVEIAAAAGL--PTA-AG-IIVDQQLLT-SDPHISAIGDCALFESVRFGETMRVESVQNATDQARCVAARLT  308 (404)
T ss_dssp             EEECCHHHHHTTC--CBS-SS-EEECTTSBC-SSTTEEECGGGEEEEETTTTEEECCCSHHHHHHHHHHHHHHTT
T ss_pred             CccCHHHHHhCCC--CCC-CC-EEECCCccc-CCCCEEEeecceeecCccCCceeeehHHHHHHHHHHHHHHHhC
Confidence            9999999887776  444 45 999999998 899999999999875432        36899999999999997

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=100.00  E-value=8.4e-40  Score=308.93  Aligned_cols=280  Identities=18%  Similarity=0.238  Sum_probs=212.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhc-CC--cEEEEcCCCceeeeccceee-eecccc-cccceeeccccc--CceeEEEe-
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQS-FA--DVVLIDEKEYFEITWASLRA-VVEPSF-AVRSVINHGDYL--SNVKIVVS-   85 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~-g~--~v~lie~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~--~~~~~~~~-   85 (368)
                      ++++||+|||||+||+++|..|++ |.  +|+|||+++.+.+....+.. ...... .........+++  .+++++.. 
T Consensus         2 ~~~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~   81 (431)
T 1q1r_A            2 NANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGT   81 (431)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSC
T ss_pred             CCCCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCC
Confidence            346899999999999999999984 76  79999999876543221111 111000 011111111111  26777654 


Q ss_pred             EEEEeec--cEEEecCCeEEEecEEEEecCCCCCCCCchHH---H---H------HHHHHHHHHHhcCCeEEEEcCchhH
Q 017664           86 TAVSITD--TEVVTAGGQTFVYDYVVVATGHVESVPKSRTE---R---L------SQYEKDFEKVKSANSVLIVGGGPTG  151 (368)
Q Consensus        86 ~~~~~~~--~~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~~---~---~------~~~~~~~~~~~~~~~v~VvG~g~~~  151 (368)
                      .+..++.  +.+.+.+++.+.||+||+|||+.|..|++++.   .   +      .++....+.+..+++++|||+|++|
T Consensus        82 ~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~p~~~~i~G~~~~~~~~v~~~~~~~d~~~l~~~l~~~~~vvViGgG~~g  161 (431)
T 1q1r_A           82 QVTAINRDRQQVILSDGRALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIG  161 (431)
T ss_dssp             CEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCGGGTTHHHHSTTEEESSSHHHHHHHHHTCCTTCEEEEECCSHHH
T ss_pred             EEEEEECCCCEEEECCCCEEECCEEEEcCCCCccCCCCCCcccCCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHH
Confidence            4677764  47888888889999999999999877765432   2   1      1222222233458999999999999


Q ss_pred             HHHHHHHhhhCCCCeEEEEecCcccccc-cCchhHHHHHHHHHcCCcEEEecceeeeccc--CCC---eEEcCCCcEEec
Q 017664          152 VELAGEIAVDFPDKKVILVHRGPKLLEF-VGSRASQIALDWLTSKKVEVILNQSVTLNTI--SDG---LIETSSGETIDT  225 (368)
Q Consensus       152 ~e~a~~l~~~~~~~~v~~i~~~~~~l~~-~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~--~~~---~v~~~~g~~i~~  225 (368)
                      +|+|..+.+  .+.+|+++++.+++++. +++++.+.+.+.+++.||++++++.|.+++.  +++   .+.+.+|+++++
T Consensus       162 ~E~A~~l~~--~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~  239 (431)
T 1q1r_A          162 LEVAATAIK--ANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPA  239 (431)
T ss_dssp             HHHHHHHHH--TTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEEC
T ss_pred             HHHHHHHHh--CCCEEEEEEeCCccccchhhHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEc
Confidence            999999985  48899999999988874 7888999999999999999999999999876  433   578889999999


Q ss_pred             CEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccc--------hHHHHHHHHHHHHH
Q 017664          226 DCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIK--------QGYLAQKHALVTAK  297 (368)
Q Consensus       226 d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~--------~~~~a~~~g~~aa~  297 (368)
                      |.||+|+|++|+.+++...++  ..+ +| +.||+++|| +.|+|||+|||+..+.+.        .+..|.+||+.+|+
T Consensus       240 D~Vv~a~G~~p~~~l~~~~gl--~~~-~g-i~Vd~~~~t-s~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~  314 (431)
T 1q1r_A          240 DLVIAGIGLIPNCELASAAGL--QVD-NG-IVINEHMQT-SDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAA  314 (431)
T ss_dssp             SEEEECCCEEECCHHHHHTTC--CBS-SS-EECCTTSBC-SSTTEEECGGGEEEEETTTTEEEECCSHHHHHHHHHHHHH
T ss_pred             CEEEECCCCCcCcchhhccCC--CCC-CC-EEECCCccc-CCCCEEEEEeEEEEccccCCceEeeCHHHHHHHHHHHHHH
Confidence            999999999999998887766  444 45 999999998 899999999999875432        46789999999999


Q ss_pred             HHH
Q 017664          298 NLK  300 (368)
Q Consensus       298 ~i~  300 (368)
                      ||.
T Consensus       315 ~i~  317 (431)
T 1q1r_A          315 ILC  317 (431)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            997

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=100.00  E-value=8.4e-40  Score=321.52  Aligned_cols=344  Identities=17%  Similarity=0.184  Sum_probs=237.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCC-C-------ceeeeccc---eee---------------------e
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEK-E-------YFEITWAS---LRA---------------------V   60 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~-~-------~~~~~~~~---~~~---------------------~   60 (368)
                      ..++||+||||||||++||.+|+ .|++|+|||+. +       .+|+.+..   ...                     .
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g~~  184 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFGWS  184 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             cccccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCCcc
Confidence            45689999999999999999997 59999999973 2       12321100   000                     0


Q ss_pred             ecc---cccccceeec------------cc-c-cCceeEEEeEEEEeeccEEEe--cCC--eEEEecEEEEecCCCCCCC
Q 017664           61 VEP---SFAVRSVINH------------GD-Y-LSNVKIVVSTAVSITDTEVVT--AGG--QTFVYDYVVVATGHVESVP  119 (368)
Q Consensus        61 ~~~---~~~~~~~~~~------------~~-~-~~~~~~~~~~~~~~~~~~v~~--~~g--~~~~~d~lvlAtG~~~~~p  119 (368)
                      ...   ......+..+            .. + ..+++++.+.+..++.+.+..  .+|  ..+.||+||||||+.|..|
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~v~v~~~~g~~~~~~~d~lviAtGs~p~~p  264 (598)
T 2x8g_A          185 LDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYP  264 (598)
T ss_dssp             CCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEEEECCCEEECCC
T ss_pred             ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEEeCCCCeEEEEeCEEEEeCCCCCCCC
Confidence            000   0000000000            00 0 126788888888888775543  455  5799999999999998877


Q ss_pred             CchHHHH--HHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCc
Q 017664          120 KSRTERL--SQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKV  197 (368)
Q Consensus       120 ~~~~~~~--~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv  197 (368)
                      ++++...  .+..........+++++|||+|++|+|+|..+.+  .+.+|+++++. .+++.+++++.+.+.+.+++.||
T Consensus       265 ~i~G~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~-~~l~~~d~~~~~~~~~~l~~~gv  341 (598)
T 2x8g_A          265 EIPGAVEYGITSDDLFSLPYFPGKTLVIGASYVALECAGFLAS--LGGDVTVMVRS-ILLRGFDQQMAEKVGDYMENHGV  341 (598)
T ss_dssp             SSTTHHHHCEEHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESS-CSSTTSCHHHHHHHHHHHHHTTC
T ss_pred             CCCCcccceEcHHHHhhCccCCCEEEEECCCHHHHHHHHHHHH--cCCEEEEEECC-cCcCcCCHHHHHHHHHHHHhCCC
Confidence            7654321  1122222222347899999999999999999985  47899999998 67788889999999999999999


Q ss_pred             EEEecceeeeccc------CC---Ce--E--EcCCCcEEe--cCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCe
Q 017664          198 EVILNQSVTLNTI------SD---GL--I--ETSSGETID--TDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENL  262 (368)
Q Consensus       198 ~i~~~~~v~~i~~------~~---~~--v--~~~~g~~i~--~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~  262 (368)
                      ++++++.+.++..      ++   +.  +  .+.+|++++  +|.||+|+|++|+.+++....+++.++++|+|.||+++
T Consensus       342 ~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~  421 (598)
T 2x8g_A          342 KFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDE  421 (598)
T ss_dssp             EEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECGGGTBCGGGCCCBCTTSCBCCCTTS
T ss_pred             EEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCccccCccCchhcCceECCCCcEEeCCCC
Confidence            9999987776632      11   32  2  245776655  99999999999999876433444577888999999999


Q ss_pred             eecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCCC-C--CCccccccCCCeEEEeecCCcceeEe-----
Q 017664          263 RVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRN-K--GTMATYKPGYPIALVSLGRREGVAHF-----  334 (368)
Q Consensus       263 ~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~-~--~~~~~~~~~~~~~~~~~g~~~~~~~~-----  334 (368)
                      || +.|+|||+|||+.. .+++++.|.+||+.||+||........ .  .+...| ..++++.+|+++.+|....     
T Consensus       422 ~t-s~~~VyA~GD~~~~-~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~~~-~~~~~a~vGl~e~~a~~~~~~~~~  498 (598)
T 2x8g_A          422 QT-TVSNVYAIGDINAG-KPQLTPVAIQAGRYLARRLFAGATELTDYSNVATTVF-TPLEYGACGLSEEDAIEKYGDKDI  498 (598)
T ss_dssp             BC-SSTTEEECGGGBTT-SCCCHHHHHHHHHHHHHHHHHCCCCCCCCTTCCEEEC-SSSCEEEEECCHHHHHHHHCGGGE
T ss_pred             cC-CCCCEEEEeeecCC-CCccHHHHHHhHHHHHHHHhcCCCcccCCCCCcEEEE-CCCceEEEeCCHHHHHhhCCCCcE
Confidence            98 89999999999643 234788999999999999985211100 0  011122 2578888999887664321     


Q ss_pred             -----cCcc----cc--Cccceeeeccccchh-HHHHHcCCCC
Q 017664          335 -----PFLT----IS--GRIPGWIKSRDLFVG-KTRKQLGLKP  365 (368)
Q Consensus       335 -----~~~~----~~--~~~~~~~k~~~~~~~-~~~~~lG~~~  365 (368)
                           ++..    ..  +...+++|+  ++++ ++++|||+|+
T Consensus       499 ~~~~~~~~~~~~~~~~~~~~~~~~kl--i~~~~~~~~ilG~~~  539 (598)
T 2x8g_A          499 EVYHSNFKPLEWTVAHREDNVCYMKL--VCRKSDNMRVLGLHV  539 (598)
T ss_dssp             EEEEEEECCTHHHHTTCCSSCEEEEE--EEETTTTTEEEEEEE
T ss_pred             EEEEEeccchhHHhhcCCCCcEEEEE--EEecCCCCEEEEEEE
Confidence                 1111    11  224688998  8985 6999999986

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=100.00  E-value=7.6e-39  Score=300.24  Aligned_cols=289  Identities=22%  Similarity=0.255  Sum_probs=211.3

Q ss_pred             CCcEEEECCChHHHHHHHHhhc---CCcEEEEcCCCceeeeccceeeeecccccccceeeccccc-CceeEEEeEEEEee
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYL-SNVKIVVSTAVSIT   91 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   91 (368)
                      .++|||||||+||+++|.+|++   +.+|+|||+++.+.+.+.................+...+. .++++++++++.+|
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~~v~~id   81 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHDSALGID   81 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECSCEEEEE
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEeEEEEEE
Confidence            3689999999999999999973   5799999999976544322111111111111222222222 37899999999998


Q ss_pred             cc--EEEecCCeEEEecEEEEecCCCCC---CCCchH-------------HHHHHHHHHHHHHhcCCeEEEEcCc-----
Q 017664           92 DT--EVVTAGGQTFVYDYVVVATGHVES---VPKSRT-------------ERLSQYEKDFEKVKSANSVLIVGGG-----  148 (368)
Q Consensus        92 ~~--~v~~~~g~~~~~d~lvlAtG~~~~---~p~~~~-------------~~~~~~~~~~~~~~~~~~v~VvG~g-----  148 (368)
                      +.  .+.+.++.++.||+||+|||+.+.   +|+...             +......+..+.......+++.+++     
T Consensus        82 ~~~~~v~~~~g~~i~yd~LviAtG~~~~~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~i~~  161 (401)
T 3vrd_B           82 PDKKLVKTAGGAEFAYDRCVVAPGIDLLYDKIEGYSEALAAKLPHAWKAGEQTALLRRQLESMDDGGVVIIAPPAPPFRC  161 (401)
T ss_dssp             TTTTEEEETTSCEEECSEEEECCCEEECGGGSBTCCSGGGGTSCCCSSCSHHHHHHHHHHHHSCTTCEEEEECCSSSCBC
T ss_pred             ccCcEEEecccceeecceeeeccCCccccCCccCchhhcccCccceeccHHHHHHHHHHHHhcccCCcEEEecCCccEEe
Confidence            64  788999999999999999999854   444221             1222222333333334444443321     


Q ss_pred             -h----hHHHHHHHHhhhCCCCeEEEEecCcccc--cccCchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCC
Q 017664          149 -P----TGVELAGEIAVDFPDKKVILVHRGPKLL--EFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSS  219 (368)
Q Consensus       149 -~----~~~e~a~~l~~~~~~~~v~~i~~~~~~l--~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~  219 (368)
                       .    .+.+++..+.+...+.+|+++++.+.+.  +.+++.+.+.+.+.+++.||++++++.+..++.+..  .+.+.+
T Consensus       162 ~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~v~~v~~~~~~~~v~~~~  241 (401)
T 3vrd_B          162 PPGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGPDAAVVKTDTEAMTVETSF  241 (401)
T ss_dssp             TTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTTTTCEEEEETTTTEEEETT
T ss_pred             ehHHHHHHHHHHHHHHhcCCCCEEEEEcccccccccccccHHHHHHHHHHHHhcCcEEEeCceEEEEEecccceEEEcCC
Confidence             1    3456666666666778999999887753  345666666677778899999999999988876544  789999


Q ss_pred             CcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCC-eeecCCCCeEEecccCCC-CccchHHHHHHHHHHHHH
Q 017664          220 GETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDEN-LRVRGFKNVFAIGDITDI-PEIKQGYLAQKHALVTAK  297 (368)
Q Consensus       220 g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~-~~~~~~~~ifa~GD~~~~-~~~~~~~~a~~~g~~aa~  297 (368)
                      |+++++|++++++|.+|+ +++...++   .+++|+|.||++ ||++++|||||+|||+.. |.+++++.|.+||+++|+
T Consensus       242 g~~i~~D~vi~~~g~~~~-~~~~~~gl---~~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~~pk~a~~A~~qa~v~A~  317 (401)
T 3vrd_B          242 GETFKAAVINLIPPQRAG-KIAQSASL---TNDSGWCPVDIRTFESSLQPGIHVIGDACNAAPMPKSAYSANSQAKVAAA  317 (401)
T ss_dssp             SCEEECSEEEECCCEEEC-HHHHHTTC---CCTTSSBCBCTTTCBBSSSTTEEECGGGBCCTTSCBSHHHHHHHHHHHHH
T ss_pred             CcEEEeeEEEEecCcCCc-hhHhhccc---cccCCCEEECCCcceecCCCCEEEecccccCCCCCchHHHHHHHHHHHHH
Confidence            999999999999999986 57777765   578899999986 888899999999999864 567899999999999999


Q ss_pred             HHHHHHcCCCC
Q 017664          298 NLKKLMMGRNK  308 (368)
Q Consensus       298 ~i~~~l~g~~~  308 (368)
                      ||.+.|.|+++
T Consensus       318 ni~~~l~G~~~  328 (401)
T 3vrd_B          318 AVVALLKGEEP  328 (401)
T ss_dssp             HHHHHHHTCCC
T ss_pred             HHHHHhcCCCC
Confidence            99999999864

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=100.00  E-value=1.6e-38  Score=285.74  Aligned_cols=277  Identities=13%  Similarity=0.131  Sum_probs=206.7

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeeccc-ccc----cceeecccccCceeEEEeEEEE
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPS-FAV----RSVINHGDYLSNVKIVVSTAVS   89 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~   89 (368)
                      ++||+|||||++|+++|..|+ +|++|+|+|+++..+..+.......... ...    ..+......+.++.++..++..
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~   81 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEGRVTD   81 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEESCEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEeEEEE
Confidence            479999999999999999997 5999999999865442221111111110 000    1111111122367788888888


Q ss_pred             eecc----EEEecCCeEEEecEEEEecCCCCCCCCchH------HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHh
Q 017664           90 ITDT----EVVTAGGQTFVYDYVVVATGHVESVPKSRT------ERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIA  159 (368)
Q Consensus        90 ~~~~----~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~------~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~  159 (368)
                      ++..    .+.+.++..+.||+||+|||+.|..|.++.      ..+............+++++|+|+|++|+|+|..|.
T Consensus        82 i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~  161 (297)
T 3fbs_A           82 AKGSFGEFIVEIDGGRRETAGRLILAMGVTDELPEIAGLRERWGSAVFHCPYCHGYELDQGKIGVIAASPMAIHHALMLP  161 (297)
T ss_dssp             EEEETTEEEEEETTSCEEEEEEEEECCCCEEECCCCBTTGGGBTTTEESCHHHHTGGGTTCEEEEECCSTTHHHHHHHGG
T ss_pred             EEEcCCeEEEEECCCCEEEcCEEEECCCCCCCCCCCCCchhhcCCeeEEcccCcchhhcCCEEEEEecCccHHHHHHHhh
Confidence            8754    678888888999999999999966554332      111122222223345899999999999999999998


Q ss_pred             hhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCCcEEecCEEEEccCCCCCch
Q 017664          160 VDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASS  239 (368)
Q Consensus       160 ~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  239 (368)
                      +.  + +|+++.+.+.       .+...+.+.+++.||+++. +.+.+++.++ .+.+.+|+++++|.+|+++|++|+.+
T Consensus       162 ~~--g-~v~~v~~~~~-------~~~~~~~~~l~~~gv~i~~-~~v~~i~~~~-~v~~~~g~~~~~D~vi~a~G~~p~~~  229 (297)
T 3fbs_A          162 DW--G-ETTFFTNGIV-------EPDADQHALLAARGVRVET-TRIREIAGHA-DVVLADGRSIALAGLFTQPKLRITVD  229 (297)
T ss_dssp             GT--S-EEEEECTTTC-------CCCHHHHHHHHHTTCEEEC-SCEEEEETTE-EEEETTSCEEEESEEEECCEEECCCS
T ss_pred             hc--C-cEEEEECCCC-------CCCHHHHHHHHHCCcEEEc-ceeeeeecCC-eEEeCCCCEEEEEEEEEccCcccCch
Confidence            63  5 9999988765       3345677889999999996 8888887554 88899999999999999999999988


Q ss_pred             hhhccccccccCCCC-cEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCCC
Q 017664          240 WLRETILKDSLDGRG-RLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRN  307 (368)
Q Consensus       240 ~~~~~~l~~~~~~~g-~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~  307 (368)
                      ++...++....+++| ++.||+++++ +.|||||+|||++.  ++++..|..||+.||.+|.+.|.+.+
T Consensus       230 ~~~~~g~~~~~~~~G~~i~vd~~~~t-~~~~vya~GD~~~~--~~~~~~A~~~g~~aa~~i~~~l~~~~  295 (297)
T 3fbs_A          230 WIEKLGCAVEEGPMGSTIVTDPMKQT-TARGIFACGDVARP--AGSVALAVGDGAMAGAAAHRSILFPE  295 (297)
T ss_dssp             CHHHHTCCEEEETTEEEECCCTTCBC-SSTTEEECSGGGCT--TCCHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred             hHHhcCCccccCCCCceEEeCCCCcc-CCCCEEEEeecCCc--hHHHHHHHHhHHHHHHHHHHHHhhhh
Confidence            887776643222467 8999999998 89999999999986  44889999999999999999987763

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=100.00  E-value=3.4e-37  Score=295.74  Aligned_cols=288  Identities=20%  Similarity=0.284  Sum_probs=213.3

Q ss_pred             CCcCCCCCCcEEEECCChHHHHHHHHhhc---CCcEEEEcCCCceeeeccceeeee----ccc-----------------
Q 017664            9 TAAGLVEKKKVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYFEITWASLRAVV----EPS-----------------   64 (368)
Q Consensus         9 ~~~~~~~~~~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~~~~~~~~~~~~~----~~~-----------------   64 (368)
                      +.+.++.++||||||||+||++||..|++   +.+|+|||+++.+++....+...+    ...                 
T Consensus         4 ~~~~~~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~   83 (493)
T 1m6i_A            4 PQDKAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSI   83 (493)
T ss_dssp             ----CCSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEES
T ss_pred             CCCCCCCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccc
Confidence            44566778999999999999999998873   899999999987664322111100    000                 


Q ss_pred             -ccc-cceeecccc----cCceeEEEe-EEEEee--ccEEEecCCeEEEecEEEEecCCCCCCCCchH----H-------
Q 017664           65 -FAV-RSVINHGDY----LSNVKIVVS-TAVSIT--DTEVVTAGGQTFVYDYVVVATGHVESVPKSRT----E-------  124 (368)
Q Consensus        65 -~~~-~~~~~~~~~----~~~~~~~~~-~~~~~~--~~~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~----~-------  124 (368)
                       +.. ..+....++    ..+++++.. .+..++  .++|.+.+|..+.||+||||||++|..|+...    .       
T Consensus        84 ~~~~~~~~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~~g~~i~yd~lviATGs~p~~~~~~~~~~~~~~~~v~~  163 (493)
T 1m6i_A           84 YFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTL  163 (493)
T ss_dssp             BSSCGGGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEECCCHHHHTSCHHHHHTEEE
T ss_pred             cccchHhhcchhhhhhhhcCCeEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCCCCCcccccccccCceEE
Confidence             000 000000111    126777775 677777  45888889989999999999999987765422    1       


Q ss_pred             --HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhC--CCCeEEEEecCccccc-ccCchhHHHHHHHHHcCCcEE
Q 017664          125 --RLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDF--PDKKVILVHRGPKLLE-FVGSRASQIALDWLTSKKVEV  199 (368)
Q Consensus       125 --~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~--~~~~v~~i~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i  199 (368)
                        .+.++.........+++++|||+|++|+|+|..|.+..  .+.+|+++++.+.+++ .+++.+...+.+.++++||++
T Consensus       164 ~~~~~d~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~l~~~~~~~~~~~l~~~GV~v  243 (493)
T 1m6i_A          164 FRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKV  243 (493)
T ss_dssp             CCSHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEE
T ss_pred             EcCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccccCCHHHHHHHHHHHHhcCCEE
Confidence              12233333344556899999999999999999987532  3678999998876554 456788889999999999999


Q ss_pred             EecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCC-CCcEEeCCCeeecCCCCeEEeccc
Q 017664          200 ILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDG-RGRLMVDENLRVRGFKNVFAIGDI  276 (368)
Q Consensus       200 ~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~-~g~i~vd~~~~~~~~~~ifa~GD~  276 (368)
                      ++++.|++++.+++  .+.+.+|+++++|.||+|+|.+|+.+++...++  .+++ +|++.||+++|+  .|||||+|||
T Consensus       244 ~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~~l~~~~gl--~~~~~~ggi~Vd~~l~t--~~~IyA~GD~  319 (493)
T 1m6i_A          244 MPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGL--EIDSDFGGFRVNAELQA--RSNIWVAGDA  319 (493)
T ss_dssp             ECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCTTHHHHTC--CBCTTTCSEECCTTCEE--ETTEEECGGG
T ss_pred             EeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCccHHHHHHcCC--ccccCCCcEEECCCccc--CCCeeEeeee
Confidence            99999998876544  578889999999999999999999988877666  4564 588999999998  5999999999


Q ss_pred             CCCCcc-------chHHHHHHHHHHHHHHHH
Q 017664          277 TDIPEI-------KQGYLAQKHALVTAKNLK  300 (368)
Q Consensus       277 ~~~~~~-------~~~~~a~~~g~~aa~~i~  300 (368)
                      +..+.+       ..+..|..||+.||+||.
T Consensus       320 a~~~~~~~g~~~~~~~~~A~~qg~~aa~ni~  350 (493)
T 1m6i_A          320 ACFYDIKLGRRRVEHHDHAVVSGRLAGENMT  350 (493)
T ss_dssp             EEEEETTTEEECCCCHHHHHHHHHHHHHHHT
T ss_pred             EeccCcccCccccchHHHHHHHHHHHHHHhc
Confidence            975422       235689999999999997

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=100.00  E-value=2.8e-38  Score=286.49  Aligned_cols=275  Identities=17%  Similarity=0.223  Sum_probs=190.3

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeecc---ceeeee------cccccccceeecccccCceeEEEe
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWA---SLRAVV------EPSFAVRSVINHGDYLSNVKIVVS   85 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~---~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~   85 (368)
                      .|||+||||||||++||.+|+ .|++|+|||++.. ++...   ......      ..++.........++  ...+...
T Consensus         6 ~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~-gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~   82 (312)
T 4gcm_A            6 DFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIP-GGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKF--GAVYQYG   82 (312)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT-TGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHT--TCEEEEC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC-CCeeecccccCCcCCccccchHHHHHHHHHHHhhc--cccccce
Confidence            699999999999999999997 4999999998753 22111   110000      000000000000111  2222222


Q ss_pred             E-EEEe--eccEEEecCCeEEEecEEEEecCCCCCCCCchHH------HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHH
Q 017664           86 T-AVSI--TDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTE------RLSQYEKDFEKVKSANSVLIVGGGPTGVELAG  156 (368)
Q Consensus        86 ~-~~~~--~~~~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~~------~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~  156 (368)
                      . ....  ........++++++||++|||||++|..|++++.      .+..+.........+++++|||+|++|+|+|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~vvViGgG~ig~E~A~  162 (312)
T 4gcm_A           83 DIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGT  162 (312)
T ss_dssp             CCCEEEECSSCEEEECSSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHH
T ss_pred             eeeeeeeeecceeeccCCeEEEeceeEEcccCccCcCCCCChhhhCCccEEeeeccCccccCCCEEEEECCCHHHHHHHH
Confidence            1 1112  2235566678899999999999998766554421      11222222233456899999999999999999


Q ss_pred             HHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC------eEE--cCCCcEEecCEE
Q 017664          157 EIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG------LIE--TSSGETIDTDCH  228 (368)
Q Consensus       157 ~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~------~v~--~~~g~~i~~d~v  228 (368)
                      .|.+  .+.+|+++++.+++++.     .....+.+++.++.......+..+...+.      ...  ..++..+++|.+
T Consensus       163 ~l~~--~g~~Vtlv~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  235 (312)
T 4gcm_A          163 FLTK--FADKVTIVHRRDELRAQ-----RILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGV  235 (312)
T ss_dssp             HHTT--TCSEEEEECSSSSCCSC-----HHHHHHHHHCTTEEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEE
T ss_pred             HHHh--cCCEEEEEecccccCcc-----hhHHHHHHHhcCcceeeecceeeeeccccccccceeeeecCCceeEEeeeeE
Confidence            9984  68999999999887543     22334567788888888777665544333      112  233458999999


Q ss_pred             EEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcC
Q 017664          229 FMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMG  305 (368)
Q Consensus       229 i~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g  305 (368)
                      ++++|..|+..++...++   .+++|+|.||+++|| +.|||||+|||++.+ +++++.|..||+.||+||.++|..
T Consensus       236 ~~~~g~~~~~~~~~~~g~---~~~~G~I~vd~~~~T-s~pgIyA~GDv~~~~-~~~~~~A~~~G~~AA~~i~~~L~~  307 (312)
T 4gcm_A          236 FIYIGMKPLTAPFKDLGI---TNDVGYIVTKDDMTT-SVPGIFAAGDVRDKG-LRQIVTATGDGSIAAQSAAEYIEH  307 (312)
T ss_dssp             EECSCEEESCGGGGGGTC---BCTTSCBCCCTTSBC-SSTTEEECSTTBSCS-CCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeecCCCcCchhHHhcce---ecCCCeEeeCCCCcc-CCCCEEEEeecCCCc-chHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999988877664   457899999999999 899999999999753 457899999999999999998753

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=100.00  E-value=2.9e-38  Score=285.27  Aligned_cols=279  Identities=18%  Similarity=0.193  Sum_probs=196.9

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecc-cccccce----eecccccCceeEEEe
Q 017664           12 GLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEP-SFAVRSV----INHGDYLSNVKIVVS   85 (368)
Q Consensus        12 ~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~   85 (368)
                      ..|+++||+|||||||||+||.+|+ .|++|+|||++...+........+... ......+    ......+..+.+...
T Consensus         2 n~M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (304)
T 4fk1_A            2 NAMKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEK   81 (304)
T ss_dssp             ----CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEEC
T ss_pred             CCCCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEee
Confidence            4577899999999999999999987 599999999986433211111111100 0000000    011111234566666


Q ss_pred             EEEEeec-----cEEEecCCeEEEecEEEEecCCCCCCCCchHHHH------HHHHHHHHHHhcCCeEEEEcCchh-HHH
Q 017664           86 TAVSITD-----TEVVTAGGQTFVYDYVVVATGHVESVPKSRTERL------SQYEKDFEKVKSANSVLIVGGGPT-GVE  153 (368)
Q Consensus        86 ~~~~~~~-----~~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~~~~------~~~~~~~~~~~~~~~v~VvG~g~~-~~e  153 (368)
                      .+..++.     .++.+.+++.++||+||||||++|..|++++...      ..+........++++++|||+|.. +.|
T Consensus        82 ~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~~p~i~G~~~~~~~~v~~~~~~~~~~~~~~~~~VIggG~~~~~e  161 (304)
T 4fk1_A           82 TVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEEFPSIPNVREYYGKSLFSCPYCDGWELKDQPLIIISENEDHTLH  161 (304)
T ss_dssp             CEEEEEECTTSCEEEEETTCCEEEEEEEEECCCCEEECCSCTTHHHHBTTTEESCHHHHSGGGTTSCEEEECCSHHHHHH
T ss_pred             EEEEeeecCCCcEEEEECCCCEEEeCEEEEccCCccccccccCccccccceeeeccccchhHhcCCceeeecCCCchhhh
Confidence            6655542     2678889999999999999999987777654321      222222333445778888888865 567


Q ss_pred             HHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEE
Q 017664          154 LAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFM  230 (368)
Q Consensus       154 ~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~  230 (368)
                      +|..+.  ..+.+|+++.+.+.+        ...+.+.++++|++++++. +..+..+++   .+++.+|+++++|.+++
T Consensus       162 ~a~~~~--~~~~~v~i~~~~~~~--------~~~~~~~l~~~g~~~~~~~-v~~~~~~~~~~~~v~~~~g~~i~~~~~vi  230 (304)
T 4fk1_A          162 MTKLVY--NWSTDLVIATNGNEL--------SQTIMDELSNKNIPVITES-IRTLQGEGGYLKKVEFHSGLRIERAGGFI  230 (304)
T ss_dssp             HHHHHT--TTCSCEEEECSSCCC--------CHHHHHHHHTTTCCEECSC-EEEEESGGGCCCEEEETTSCEECCCEEEE
T ss_pred             HHHHHH--hCCceEEEEeccccc--------hhhhhhhhhccceeEeeee-EEEeecCCCeeeeeeccccceeeecceee
Confidence            777665  358899998876543        3456778899999999765 566655544   68899999999999999


Q ss_pred             ccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcC
Q 017664          231 CTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMG  305 (368)
Q Consensus       231 a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g  305 (368)
                      ++|.+|+.+++...++  +++++|+|.||+++|| +.|||||+|||++.+ ++++..|..||+.||.+|.++|..
T Consensus       231 ~~g~~~~~~~~~~~g~--~~~~~G~I~vd~~~~T-s~p~IyA~GDv~~~~-~~~~~~A~~~G~~AA~~i~~~L~~  301 (304)
T 4fk1_A          231 VPTFFRPNQFIEQLGC--ELQSNGTFVIDDFGRT-SEKNIYLAGETTTQG-PSSLIIAASQGNKAAIAINSDITD  301 (304)
T ss_dssp             CCEEECSSCHHHHTTC--CCCTTSSSCSSTTCBC-SSTTEEECSHHHHTS-CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeccccCChhhhhcCe--EECCCCCEEECcCCcc-CCCCEEEEeccCCCc-chHHHHHHHHHHHHHHHHHHHHhh
Confidence            8887777777776665  6789999999999999 899999999999753 346889999999999999998864

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=100.00  E-value=9.3e-38  Score=283.98  Aligned_cols=282  Identities=19%  Similarity=0.181  Sum_probs=206.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeee-cccccc---cce-eeccccc--CceeEEEe
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVV-EPSFAV---RSV-INHGDYL--SNVKIVVS   85 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~-~~~~~~---~~~-~~~~~~~--~~~~~~~~   85 (368)
                      .+++||+|||||+||+++|..|+ +|++|+|||++  .+..+....... .+.+..   ..+ ....++.  .++++...
T Consensus        13 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   90 (323)
T 3f8d_A           13 GEKFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLLD   90 (323)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEES
T ss_pred             CCccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEEE
Confidence            34689999999999999999998 59999999998  433332111100 011100   001 0111111  15666667


Q ss_pred             EEEEeecc----EEEecCCeEEEecEEEEecCCCCCCCCchH------HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHH
Q 017664           86 TAVSITDT----EVVTAGGQTFVYDYVVVATGHVESVPKSRT------ERLSQYEKDFEKVKSANSVLIVGGGPTGVELA  155 (368)
Q Consensus        86 ~~~~~~~~----~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~------~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a  155 (368)
                      .+..++..    .+.+.++..+.||+||+|||+.|..|+++.      ..+............+++++|+|+|++++|+|
T Consensus        91 ~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a  170 (323)
T 3f8d_A           91 IVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVADAPLFKNRVVAVIGGGDSALEGA  170 (323)
T ss_dssp             CEEEEEEC--CEEEEESSSCEEEEEEEEECCCCEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHH
T ss_pred             EEEEEEecCCEEEEEECCCCEEEcCEEEECcCCCCccCCCCchhhhcCCceEEeccCCHhHcCCCEEEEECCCHHHHHHH
Confidence            77777644    577777789999999999999966655432      22212222222445689999999999999999


Q ss_pred             HHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCC---Cc--EEecCEE
Q 017664          156 GEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSS---GE--TIDTDCH  228 (368)
Q Consensus       156 ~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~---g~--~i~~d~v  228 (368)
                      ..+.+.  +.+|+++++.+++++  ++   ..+.+.+++.||++++++.+.+++.++.  .+.+.+   |+  ++++|.+
T Consensus       171 ~~l~~~--g~~v~~~~~~~~~~~--~~---~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~v  243 (323)
T 3f8d_A          171 EILSSY--STKVYLIHRRDTFKA--QP---IYVETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGV  243 (323)
T ss_dssp             HHHHHH--SSEEEEECSSSSCCS--CH---HHHHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEE
T ss_pred             HHHHHh--CCeEEEEEeCCCCCc--CH---HHHHHHHhCCCcEEEeCCEEEEEeccCceeEEEEEECCCCceEEEEcCEE
Confidence            999864  789999999988764  22   2233344556999999999999887654  466554   65  7999999


Q ss_pred             EEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCC-ccchHHHHHHHHHHHHHHHHHHHcCCC
Q 017664          229 FMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIP-EIKQGYLAQKHALVTAKNLKKLMMGRN  307 (368)
Q Consensus       229 i~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~-~~~~~~~a~~~g~~aa~~i~~~l~g~~  307 (368)
                      |+++|+.|+.+++...++  .++++|++.||+++|+ +.|||||+|||++.+ .++++..|..||+.||.||.+.+.+++
T Consensus       244 v~a~G~~p~~~~~~~~g~--~~~~~g~i~vd~~~~t-~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~  320 (323)
T 3f8d_A          244 FIEIGFDPPTDFAKSNGI--ETDTNGYIKVDEWMRT-SVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYVTEKK  320 (323)
T ss_dssp             EECCCEECCHHHHHHTTC--CBCTTSSBCCCTTCBC-SSTTEEECSTTBSTTTTCCCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             EEEECCCCChhHHhhcCe--eecCCCcEecCCCcee-cCCCEEEcceecCCCCcccceeehhhHHHHHHHHHHHHHHHhh
Confidence            999999999888877765  6688999999999998 899999999999863 356899999999999999999998764

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=100.00  E-value=7.8e-38  Score=285.16  Aligned_cols=281  Identities=19%  Similarity=0.211  Sum_probs=202.7

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeee-ccccc----cccee-eccccc--CceeEE
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVV-EPSFA----VRSVI-NHGDYL--SNVKIV   83 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~-~~~~~----~~~~~-~~~~~~--~~~~~~   83 (368)
                      |++++||+||||||||+++|..|+ .|++|+|||++ .++..+....... .+.+.    ...+. ...++.  .+++++
T Consensus         5 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~   83 (325)
T 2q7v_A            5 TAHDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVE   83 (325)
T ss_dssp             CCEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEE
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEE
Confidence            445689999999999999999997 49999999998 3443322111000 00110    00000 011111  256776


Q ss_pred             EeEEEEeecc-------EEEecCCeEEEecEEEEecCCCCCCCCchHH------HHHHHHHHHHHHhcCCeEEEEcCchh
Q 017664           84 VSTAVSITDT-------EVVTAGGQTFVYDYVVVATGHVESVPKSRTE------RLSQYEKDFEKVKSANSVLIVGGGPT  150 (368)
Q Consensus        84 ~~~~~~~~~~-------~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~~------~~~~~~~~~~~~~~~~~v~VvG~g~~  150 (368)
                      ...+..++..       .+.+.++..+.||+||+|||+.|..|+++..      .++.+.........+++++|+|+|++
T Consensus        84 ~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~  163 (325)
T 2q7v_A           84 MDEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRKLGIPGEDNFWGKGVSTCATCDGFFYKGKKVVVIGGGDA  163 (325)
T ss_dssp             ECCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHH
T ss_pred             eeeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChhhccCceEEEeccCCHHHcCCCEEEEECCCHH
Confidence            6777766532       5667788889999999999998666554321      11112222223456799999999999


Q ss_pred             HHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHH-HcCCcEEEecceeeecccCCC--eEEcC---CCc--E
Q 017664          151 GVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWL-TSKKVEVILNQSVTLNTISDG--LIETS---SGE--T  222 (368)
Q Consensus       151 ~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l-~~~gv~i~~~~~v~~i~~~~~--~v~~~---~g~--~  222 (368)
                      |+|+|..|.+  .+.+|+++++.+.+..  +    ..+.+.+ ++.||++++++.++++..++.  .+.+.   +|+  +
T Consensus       164 g~e~A~~l~~--~g~~Vtlv~~~~~~~~--~----~~~~~~l~~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~~g~~~~  235 (325)
T 2q7v_A          164 AVEEGMFLTK--FADEVTVIHRRDTLRA--N----KVAQARAFANPKMKFIWDTAVEEIQGADSVSGVKLRNLKTGEVSE  235 (325)
T ss_dssp             HHHHHHHHTT--TCSEEEEECSSSSCCS--C----HHHHHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEE
T ss_pred             HHHHHHHHHh--cCCEEEEEeCCCcCCc--c----hHHHHHHHhcCCceEecCCceEEEccCCcEEEEEEEECCCCcEEE
Confidence            9999999985  4889999999876532  2    2333444 457999999999999887543  45553   665  7


Q ss_pred             EecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHH
Q 017664          223 IDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKL  302 (368)
Q Consensus       223 i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~  302 (368)
                      +++|.+|+|+|++|+.+++... +  .++++|++.||+++|+ +.|||||+|||+..+ ++++..|.+||+.||.||.+.
T Consensus       236 i~~D~vi~a~G~~p~~~~l~~~-~--~~~~~g~i~vd~~~~t-~~~~vya~GD~~~~~-~~~~~~A~~~g~~aa~~i~~~  310 (325)
T 2q7v_A          236 LATDGVFIFIGHVPNTAFVKDT-V--SLRDDGYVDVRDEIYT-NIPMLFAAGDVSDYI-YRQLATSVGAGTRAAMMTERQ  310 (325)
T ss_dssp             EECSEEEECSCEEESCGGGTTT-S--CBCTTSCBCCBTTTBC-SSTTEEECSTTTCSS-CCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEcCEEEEccCCCCChHHHhhh-c--ccCCCccEecCCCCcc-CCCCEEEeecccCcc-HHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888765 3  6678899999999998 899999999999863 457899999999999999999


Q ss_pred             HcCCC
Q 017664          303 MMGRN  307 (368)
Q Consensus       303 l~g~~  307 (368)
                      |.+++
T Consensus       311 l~~~~  315 (325)
T 2q7v_A          311 LAALE  315 (325)
T ss_dssp             HHHC-
T ss_pred             HHHhh
Confidence            98764

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=100.00  E-value=1.4e-37  Score=282.08  Aligned_cols=279  Identities=20%  Similarity=0.239  Sum_probs=194.5

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeecc-cee--eeec--ccccc----cce-eecccc--cCc
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWA-SLR--AVVE--PSFAV----RSV-INHGDY--LSN   79 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~-~~~--~~~~--~~~~~----~~~-~~~~~~--~~~   79 (368)
                      |++.+||+||||||||++||.+|+ +|++|+|||++...+..+. .+.  ..+.  +.++.    ..+ ....+.  ..+
T Consensus         1 M~~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~   80 (314)
T 4a5l_A            1 MSNIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYG   80 (314)
T ss_dssp             -CCCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTT
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcC
Confidence            566799999999999999999997 5999999999864332111 110  0000  01100    000 000111  013


Q ss_pred             eeEEEeEEEEeec----cEEEecCCeEEEecEEEEecCCCCCCCCchHHHHH------HHHH--HHHHHhcCCeEEEEcC
Q 017664           80 VKIVVSTAVSITD----TEVVTAGGQTFVYDYVVVATGHVESVPKSRTERLS------QYEK--DFEKVKSANSVLIVGG  147 (368)
Q Consensus        80 ~~~~~~~~~~~~~----~~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~~~~~------~~~~--~~~~~~~~~~v~VvG~  147 (368)
                      ..+....+.....    ..+.+.++..+.||+||||||+.|..|++++....      .+..  .......+++++|||+
T Consensus        81 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGg  160 (314)
T 4a5l_A           81 TTIITETIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKRMHVPGEDKYWQNGVSACAICDGAVPIFRNKVLMVVGG  160 (314)
T ss_dssp             CEEECCCEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEEECS
T ss_pred             cEEEEeEEEEeecCCCceEEEECCCeEEEEeEEEEcccccccccCCCccccccccceeeehhhhhhhhhcCCCeEEEECC
Confidence            4444444443332    25667788899999999999999776665543221      1111  1122345799999999


Q ss_pred             chhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC---eEE-----cCC
Q 017664          148 GPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIE-----TSS  219 (368)
Q Consensus       148 g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~-----~~~  219 (368)
                      |++|+|+|..+.+  .+.+|+++++.+....     ......+.....+++.+....+.++...+.   .+.     +.+
T Consensus       161 G~ig~e~A~~l~~--~G~~Vt~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  233 (314)
T 4a5l_A          161 GDAAMEEALHLTK--YGSKVIILHRRDAFRA-----SKTMQERVLNHPKIEVIWNSELVELEGDGDLLNGAKIHNLVSGE  233 (314)
T ss_dssp             SHHHHHHHHHHTT--TSSEEEEECSSSSCCS-----CHHHHHHHHTCTTEEEECSEEEEEEEESSSSEEEEEEEETTTCC
T ss_pred             ChHHHHHHHHHHH--hCCeeeeecccccccc-----cchhhhhhhcccceeeEeeeeeEEEEeeeeccceeEEeeccccc
Confidence            9999999999984  6899999998766432     223445566778899988888877765443   222     344


Q ss_pred             CcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHH
Q 017664          220 GETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNL  299 (368)
Q Consensus       220 g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i  299 (368)
                      ++++++|.+++++|++|+.+++...   ...+++|++ ||+++|| +.|||||+|||++.+ .+++..|+.||+.||.++
T Consensus       234 ~~~i~~d~vi~a~G~~pn~~~l~~~---~~~~~~G~i-v~~~~~T-s~pgIyA~GDv~~~~-~~~~~~A~~~G~~AA~~~  307 (314)
T 4a5l_A          234 YKVVPVAGLFYAIGHSPNSKFLGGQ---VKTADDGYI-LTEGPKT-SVDGVFACGDVCDRV-YRQAIVAAGSGCMAALSC  307 (314)
T ss_dssp             EEEEECSEEEECSCEEESCGGGTTS---SCBCTTSCB-CCBTTBC-SSTTEEECSTTTCSS-CCCHHHHHHHHHHHHHHH
T ss_pred             ceeeccccceEecccccChhHhccc---ceEcCCeeE-eCCCCcc-CCCCEEEEEeccCCc-chHHHHHHHHHHHHHHHH
Confidence            5789999999999999999988643   357788877 8999998 899999999999865 347888999999999999


Q ss_pred             HHHHc
Q 017664          300 KKLMM  304 (368)
Q Consensus       300 ~~~l~  304 (368)
                      .++|+
T Consensus       308 ~~yL~  312 (314)
T 4a5l_A          308 EKWLQ  312 (314)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99885

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=100.00  E-value=5.1e-38  Score=285.61  Aligned_cols=288  Identities=22%  Similarity=0.212  Sum_probs=201.0

Q ss_pred             eeccCCcCCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeee-cccc---ccccee-eccccc-
Q 017664            5 LWGSTAAGLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVV-EPSF---AVRSVI-NHGDYL-   77 (368)
Q Consensus         5 ~~~~~~~~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~-~~~~---~~~~~~-~~~~~~-   77 (368)
                      +.......|+.++||+||||||+|+++|..|+ +|++|+|+|+.. ++..+....... .+.+   ....+. ...++. 
T Consensus         5 l~~~~~~~m~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (319)
T 3cty_A            5 LHAVSSEEKERDFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAV-AGGLTAEAPLVENYLGFKSIVGSELAKLFADHAA   83 (319)
T ss_dssp             ---------CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHH
T ss_pred             ccccccccccCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC-CCccccccchhhhcCCCcccCHHHHHHHHHHHHH
Confidence            33344455666789999999999999999998 499999999954 332221110000 0000   000000 001111 


Q ss_pred             -CceeEEEeEEEEeec--c--EEEecCCeEEEecEEEEecCCCCCCCCchHH------HHHHHHHHHHHHhcCCeEEEEc
Q 017664           78 -SNVKIVVSTAVSITD--T--EVVTAGGQTFVYDYVVVATGHVESVPKSRTE------RLSQYEKDFEKVKSANSVLIVG  146 (368)
Q Consensus        78 -~~~~~~~~~~~~~~~--~--~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~~------~~~~~~~~~~~~~~~~~v~VvG  146 (368)
                       .+++++..++..++.  +  .+.+ ++..+.||+||+|+|+.|..|+++..      .+............+++++|+|
T Consensus        84 ~~~v~~~~~~v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG  162 (319)
T 3cty_A           84 NYAKIREGVEVRSIKKTQGGFDIET-NDDTYHAKYVIITTGTTHKHLGVKGESEYFGKGTSYCSTCDGYLFKGKRVVTIG  162 (319)
T ss_dssp             TTSEEEETCCEEEEEEETTEEEEEE-SSSEEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHHHGGGGBTSEEEEEC
T ss_pred             HcCCEEEEeeEEEEEEeCCEEEEEE-CCCEEEeCEEEECCCCCcccCCCCChHHhCCceEEEEEecchhhcCCCeEEEEC
Confidence             156665556666653  3  4555 56689999999999998766654321      1111122222345689999999


Q ss_pred             CchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcC---CC
Q 017664          147 GGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETS---SG  220 (368)
Q Consensus       147 ~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~---~g  220 (368)
                      +|++|+|+|..|.+  .+.+|+++++.+.+..  +    ..+.+.+++.||++++++++.++..+++   .+.+.   +|
T Consensus       163 ~G~~g~e~a~~l~~--~g~~V~~i~~~~~~~~--~----~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g  234 (319)
T 3cty_A          163 GGNSGAIAAISMSE--YVKNVTIIEYMPKYMC--E----NAYVQEIKKRNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTG  234 (319)
T ss_dssp             CSHHHHHHHHHHTT--TBSEEEEECSSSSCCS--C----HHHHHHHHHTTCCEECSEEEEEEEESSSSEEEEEEEETTTC
T ss_pred             CCHHHHHHHHHHHh--hCCcEEEEEcCCccCC--C----HHHHHHHhcCCcEEEcCCeEEEEecCCceEEEEEEEEcCCC
Confidence            99999999999985  4789999998876532  2    3456667789999999999999887654   45543   56


Q ss_pred             c--EEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHH
Q 017664          221 E--TIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKN  298 (368)
Q Consensus       221 ~--~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~  298 (368)
                      +  ++++|.||+|+|+.|+.+++...++  .++++|++.||+++|+ +.|||||+|||+..+ ++++..|.+||+.||.|
T Consensus       235 ~~~~i~~D~vi~a~G~~p~~~~l~~~gl--~~~~~g~i~vd~~~~t-~~~~vya~GD~~~~~-~~~~~~A~~~g~~aa~~  310 (319)
T 3cty_A          235 EEKLIETDGVFIYVGLIPQTSFLKDSGV--KLDERGYIVVDSRQRT-SVPGVYAAGDVTSGN-FAQIASAVGDGCKAALS  310 (319)
T ss_dssp             CEEEECCSEEEECCCEEECCGGGTTSCC--CBCTTSCBCCCTTCBC-SSTTEEECSTTBTTC-CCCHHHHHHHHHHHHHH
T ss_pred             ceEEEecCEEEEeeCCccChHHHhhccc--cccCCccEeCCCCCcc-CCCCEEEeecccCcc-hhhHHHHHHHHHHHHHH
Confidence            4  6999999999999999998876655  6688899999999997 899999999999863 35789999999999999


Q ss_pred             HHHHHcCC
Q 017664          299 LKKLMMGR  306 (368)
Q Consensus       299 i~~~l~g~  306 (368)
                      |.+.|.++
T Consensus       311 i~~~l~~~  318 (319)
T 3cty_A          311 LYSDSISK  318 (319)
T ss_dssp             HHHHHTC-
T ss_pred             HHHHhhcc
Confidence            99999775

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=100.00  E-value=2.4e-36  Score=283.95  Aligned_cols=294  Identities=20%  Similarity=0.224  Sum_probs=216.5

Q ss_pred             CcEEEECCChHHHHHHHHhhc----CCcEEEEcCCCceeeeccceeeeecccccccceeeccccc--CceeEEEeEEEEe
Q 017664           17 KKVVVIGGGVGGSLLAYHIQS----FADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYL--SNVKIVVSTAVSI   90 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~~----g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   90 (368)
                      +||+|||||++|+++|..|++    |++|+|||+++.+.+...............+......+++  .+++++..++..+
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~v~~i   81 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEGTVEKI   81 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEECEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEeeEEEE
Confidence            589999999999999999864    8999999999987655432221111111122222223222  2688888888888


Q ss_pred             ecc--EEEecCCe----EEEecEEEEecCCCCCCCCchHHH--------HHHHHHHHHHHhc-CCeEEEEcCch------
Q 017664           91 TDT--EVVTAGGQ----TFVYDYVVVATGHVESVPKSRTER--------LSQYEKDFEKVKS-ANSVLIVGGGP------  149 (368)
Q Consensus        91 ~~~--~v~~~~g~----~~~~d~lvlAtG~~~~~p~~~~~~--------~~~~~~~~~~~~~-~~~v~VvG~g~------  149 (368)
                      +..  .+.+.++.    ++.||+||+|||+.|..|.+++..        ..+.....+.+.. .++++|||+|.      
T Consensus        82 ~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~l~~~~~~~vViG~G~f~~~~~  161 (409)
T 3h8l_A           82 DAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKGWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHN  161 (409)
T ss_dssp             ETTTTEEEEECTTSCEEEEECSEEEECCCCEECGGGSBTHHHHCEESSSTTHHHHHHHHHHHCCSEEEEEEECCBCCCCS
T ss_pred             eCCCCEEEEccCCcccceeeCCEEEECCCCCcCccCCCChhhcCcCcCCHHHHHHHHHHHHHhcCCeEEEEecccccCCC
Confidence            864  77776665    399999999999997655433211        1112222222222 26778999991      


Q ss_pred             -------------------hHHHHHHHHhhh--CCC----CeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecce
Q 017664          150 -------------------TGVELAGEIAVD--FPD----KKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQS  204 (368)
Q Consensus       150 -------------------~~~e~a~~l~~~--~~~----~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~  204 (368)
                                         .++|+|..+...  ..+    .+|+++++.+ .++.+++.+.+.+.+.+++.||++++++.
T Consensus       162 ~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~-~l~~~~~~~~~~~~~~l~~~gV~~~~~~~  240 (409)
T 3h8l_A          162 PKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGE-YLSDLSPNSRKAVASIYNQLGIKLVHNFK  240 (409)
T ss_dssp             SCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEEEEEECSSS-SSTTBCHHHHHHHHHHHHHHTCEEECSCC
T ss_pred             ccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCc-cccccCHHHHHHHHHHHHHCCCEEEcCCc
Confidence                               467877654421  123    4899999988 77778889999999999999999999999


Q ss_pred             eeecccCCCeEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccch
Q 017664          205 VTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQ  284 (368)
Q Consensus       205 v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~  284 (368)
                      |++++.+  .+.+.+|+++++|.+|+++|+.|+ +++...+.++ .+++|++.||+++|++++||||++|||+..+.+++
T Consensus       241 v~~i~~~--~v~~~~g~~~~~D~vi~a~G~~~~-~~l~~~~~~l-~~~~G~i~vd~~~~~~~~~~vfa~GD~~~~~~~~~  316 (409)
T 3h8l_A          241 IKEIREH--EIVDEKGNTIPADITILLPPYTGN-PALKNSTPDL-VDDGGFIPTDLNMVSIKYDNVYAVGDANSMTVPKL  316 (409)
T ss_dssp             EEEECSS--EEEETTSCEEECSEEEEECCEECC-HHHHTSCGGG-SCTTSCBCBBTTSBBSSCTTEEECGGGBTTCCSCC
T ss_pred             eEEECCC--eEEECCCCEEeeeEEEECCCCCcc-HHHHhccccC-cCCCCCEEeCcccccCCCCCEEEeehhccCCCCcH
Confidence            9988654  688899999999999999999987 5666663332 46789999999999988999999999998777789


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCccccccC
Q 017664          285 GYLAQKHALVTAKNLKKLMMGRNKGTMATYKPG  317 (368)
Q Consensus       285 ~~~a~~~g~~aa~~i~~~l~g~~~~~~~~~~~~  317 (368)
                      +..|..||+.||+||.+.+.+..  +...|.|.
T Consensus       317 ~~~A~~q~~~aa~~i~~~l~~~~--~~~~~~~~  347 (409)
T 3h8l_A          317 GYLAVMTGRIAAQHLANRLGVPT--KVDKYYPT  347 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCC--CCCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCC--CccccCCE
Confidence            99999999999999999984432  22455553

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=100.00  E-value=3.9e-37  Score=279.80  Aligned_cols=282  Identities=18%  Similarity=0.200  Sum_probs=206.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccceeee-eccccc----ccce-eeccccc--CceeEEE
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLRAV-VEPSFA----VRSV-INHGDYL--SNVKIVV   84 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~~~-~~~~~~----~~~~-~~~~~~~--~~~~~~~   84 (368)
                      ++++||+||||||||+++|..|++ |++|+|+|+.. .+..+...... ..+.+.    ...+ ....++.  .+++++.
T Consensus         3 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (320)
T 1trb_A            3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGME-KGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIF   81 (320)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS-TTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEEC
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEccCC-CCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE
Confidence            356899999999999999999985 99999999753 33222111000 000110    0000 0001111  2567776


Q ss_pred             eEEEEeecc----EEEecCCeEEEecEEEEecCCCCCCCCchHHH------HHHHHHHHHHHhcCCeEEEEcCchhHHHH
Q 017664           85 STAVSITDT----EVVTAGGQTFVYDYVVVATGHVESVPKSRTER------LSQYEKDFEKVKSANSVLIVGGGPTGVEL  154 (368)
Q Consensus        85 ~~~~~~~~~----~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~~~------~~~~~~~~~~~~~~~~v~VvG~g~~~~e~  154 (368)
                      ..+..++..    .+ +.++..+.||+||+|||+.|..|+++...      +..+.........+++++|||+|++|+|+
T Consensus        82 ~~v~~i~~~~~~~~v-~~~~~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~  160 (320)
T 1trb_A           82 DHINKVDLQNRPFRL-NGDNGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATSDGFFYRNQKVAVIGGGNTAVEE  160 (320)
T ss_dssp             CCEEEEECSSSSEEE-EESSCEEEEEEEEECCCEEECCCCCHHHHHTBTTTEESCHHHHGGGGTTSEEEEECSSHHHHHH
T ss_pred             eeeeEEEecCCEEEE-EeCCCEEEcCEEEECCCCCcCCCCCCChHHhCCceeEecccCCccccCCCeEEEECCCHHHHHH
Confidence            667777642    34 56778899999999999998877765432      11112222234568999999999999999


Q ss_pred             HHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCC----C--cEEec
Q 017664          155 AGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSS----G--ETIDT  225 (368)
Q Consensus       155 a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~----g--~~i~~  225 (368)
                      |..|.+  .+.+|+++++.+.+.  .++.+.+.+.+.+++.||++++++.+.+++.+++   .+.+.+    |  +++++
T Consensus       161 A~~l~~--~g~~Vtlv~~~~~~~--~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~  236 (320)
T 1trb_A          161 ALYLSN--IASEVHLIHRRDGFR--AEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDV  236 (320)
T ss_dssp             HHHHTT--TSSEEEEECSSSSCC--CCHHHHHHHHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEEC
T ss_pred             HHHHHh--cCCeEEEEEeCCccc--cCHHHHHHHHHhcccCCeEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEc
Confidence            999985  588999999987753  3556777888899999999999999999987653   355543    4  58999


Q ss_pred             CEEEEccCCCCCchhhhccccccccCCCCcEEeCCCe-----eecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHH
Q 017664          226 DCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENL-----RVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLK  300 (368)
Q Consensus       226 d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~-----~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~  300 (368)
                      |.+|+|+|++|+.+++. .++  .++ +|++.||+++     ++ +.|||||+|||+..+ ++++..|..+|+.||.+|.
T Consensus       237 D~vv~a~G~~p~~~~~~-~~l--~~~-~G~i~vd~~~~~~~~~t-~~~~vya~GD~~~~~-~~~~~~A~~~g~~aa~~i~  310 (320)
T 1trb_A          237 AGLFVAIGHSPNTAIFE-GQL--ELE-NGYIKVQSGIHGNATQT-SIPGVFAAGDVMDHI-YRQAITSAGTGCMAALDAE  310 (320)
T ss_dssp             SEEEECSCEEESCGGGT-TTS--CEE-TTEECCCCSSSSCTTBC-SSTTEEECGGGGCSS-SCCHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCChHHhc-ccc--ccc-CceEEECCCcccccccC-CCCCEEEcccccCCc-chhhhhhhccHHHHHHHHH
Confidence            99999999999988876 334  566 8999999997     55 899999999999864 4578999999999999999


Q ss_pred             HHHcCCC
Q 017664          301 KLMMGRN  307 (368)
Q Consensus       301 ~~l~g~~  307 (368)
                      +.|.+++
T Consensus       311 ~~l~~~~  317 (320)
T 1trb_A          311 RYLDGLA  317 (320)
T ss_dssp             HHHTC--
T ss_pred             HHHHhcc
Confidence            9998764

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=100.00  E-value=7.6e-37  Score=277.05  Aligned_cols=282  Identities=18%  Similarity=0.175  Sum_probs=202.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEE-EcCCCceeeeccceeeee-ccccc-----ccceeeccccc--CceeEE
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVL-IDEKEYFEITWASLRAVV-EPSFA-----VRSVINHGDYL--SNVKIV   83 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~l-ie~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~--~~~~~~   83 (368)
                      ++++||+|||||+|||++|..|+ +|++|+| +|+ +.+++.+....... .+.+.     .+......++.  .++++.
T Consensus         2 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   80 (315)
T 3r9u_A            2 NAMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHE   80 (315)
T ss_dssp             CSCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEE
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEE
Confidence            35689999999999999999998 4999999 999 44444332211100 01110     01111111111  156666


Q ss_pred             EeEEEEe-ec--c--EE-EecCCeEEEecEEEEecCCCCCCCCchH------HHHHHHHHHHHHHhcCCeEEEEcCchhH
Q 017664           84 VSTAVSI-TD--T--EV-VTAGGQTFVYDYVVVATGHVESVPKSRT------ERLSQYEKDFEKVKSANSVLIVGGGPTG  151 (368)
Q Consensus        84 ~~~~~~~-~~--~--~v-~~~~g~~~~~d~lvlAtG~~~~~p~~~~------~~~~~~~~~~~~~~~~~~v~VvG~g~~~  151 (368)
                      ...+..+ +.  +  .+ ...++ .+.||+||+|||+.|..|+++.      ..+............+++++|+|+|+++
T Consensus        81 ~~~v~~i~~~~~~~~~v~~~~~~-~~~~d~lvlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~~  159 (315)
T 3r9u_A           81 MVGVEQILKNSDGSFTIKLEGGK-TELAKAVIVCTGSAPKKAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTA  159 (315)
T ss_dssp             CCCEEEEEECTTSCEEEEETTSC-EEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHHHGGGGTTSEEEEECCBHHH
T ss_pred             EEEEEEEecCCCCcEEEEEecCC-EEEeCEEEEeeCCCCCCCCCCChhhcCCCeEEeeecccccccCcCEEEEECCCHHH
Confidence            6666666 33  2  32 22344 8999999999999866655432      2222233333344568999999999999


Q ss_pred             HHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEc--CCCc--EEe
Q 017664          152 VELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIET--SSGE--TID  224 (368)
Q Consensus       152 ~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~--~~g~--~i~  224 (368)
                      +|+|..+.+  .+.+|+++++.+.+.  .+   ...+.+.+++.||++++++.+.++..+++   .+.+  .+|+  +++
T Consensus       160 ~e~a~~l~~--~g~~v~~~~~~~~~~--~~---~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~  232 (315)
T 3r9u_A          160 LEEALYLAN--ICSKIYLIHRRDEFR--AA---PSTVEKVKKNEKIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLN  232 (315)
T ss_dssp             HHHHHHHHT--TSSEEEEECSSSSCB--SC---HHHHHHHHHCTTEEEECSCEEEEEEEETTEEEEEEEECTTSCEEEEC
T ss_pred             HHHHHHHHh--hCCEEEEEEeCCCCC--CC---HHHHHHHHhcCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEee
Confidence            999999985  488999999988762  22   23445566789999999999999987663   3444  3775  899


Q ss_pred             cCEEEEccCCCCCchhhhc-cccc-cccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHH
Q 017664          225 TDCHFMCTGKAMASSWLRE-TILK-DSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKL  302 (368)
Q Consensus       225 ~d~vi~a~G~~p~~~~~~~-~~l~-~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~  302 (368)
                      +|.+|+++|++|+.+++.. ..++ +.++++|++.||+++|| +.|||||+|||++.+ ++++..|+.||+.||.||.+.
T Consensus       233 ~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~~~~t-~~~~v~a~GD~~~~~-~~~~~~A~~~g~~aa~~i~~~  310 (315)
T 3r9u_A          233 VPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQT-SVAGLFAAGDLRKDA-PKQVICAAGDGAVAALSAMAY  310 (315)
T ss_dssp             CSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBC-SSTTEEECGGGBTTC-CCCHHHHHHHHHHHHHHHHHH
T ss_pred             cCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCCCccc-CCCCEEEeecccCCc-hhhhhhHHhhHHHHHHHHHHH
Confidence            9999999999999988876 2233 46788899999999999 899999999998643 568899999999999999998


Q ss_pred             HcCC
Q 017664          303 MMGR  306 (368)
Q Consensus       303 l~g~  306 (368)
                      |.++
T Consensus       311 l~~~  314 (315)
T 3r9u_A          311 IESL  314 (315)
T ss_dssp             HHHC
T ss_pred             HHhc
Confidence            8764

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=100.00  E-value=1e-36  Score=275.97  Aligned_cols=279  Identities=20%  Similarity=0.216  Sum_probs=200.4

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCC-cEEEEcCCCceeeeccceeeee-cccc----ccccee-eccccc--CceeEEEe
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFA-DVVLIDEKEYFEITWASLRAVV-EPSF----AVRSVI-NHGDYL--SNVKIVVS   85 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~-~v~lie~~~~~~~~~~~~~~~~-~~~~----~~~~~~-~~~~~~--~~~~~~~~   85 (368)
                      ++||+||||||+|+++|..|+ +|+ +|+|+|++. ++..+....... .+.+    ....+. ...++.  .+++++..
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~   79 (311)
T 2q0l_A            1 MIDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGM-PGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEMT   79 (311)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCSSEEEECSSS-TTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEECS
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCcEEEEcCCC-CCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEEE
Confidence            369999999999999999997 499 999999964 332221100000 0000    000000 001111  15666666


Q ss_pred             EEEEeec--c--EEEecCCeEEEecEEEEecCCCCCCCCchHHH------HHHHHHHHHHHhcCCeEEEEcCchhHHHHH
Q 017664           86 TAVSITD--T--EVVTAGGQTFVYDYVVVATGHVESVPKSRTER------LSQYEKDFEKVKSANSVLIVGGGPTGVELA  155 (368)
Q Consensus        86 ~~~~~~~--~--~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~~~------~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a  155 (368)
                      ++..++.  +  .+.+.++..++||+||+|||+.|..|+++...      +..+.........+++++|+|+|++|+|+|
T Consensus        80 ~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A  159 (311)
T 2q0l_A           80 AVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGFFYKNKEVAVLGGGDTAVEEA  159 (311)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEECCCCCBTHHHHBTTTEESCHHHHGGGGTTSEEEEECCSHHHHHHH
T ss_pred             EEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCCCCCCCChhhccCCcEEEeecCChhhcCCCEEEEECCCHHHHHHH
Confidence            6666653  3  56677888899999999999987777654321      111222223345679999999999999999


Q ss_pred             HHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHH-cCCcEEEecceeeecccCCC---eEEcC---CCc--EEecC
Q 017664          156 GEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLT-SKKVEVILNQSVTLNTISDG---LIETS---SGE--TIDTD  226 (368)
Q Consensus       156 ~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~-~~gv~i~~~~~v~~i~~~~~---~v~~~---~g~--~i~~d  226 (368)
                      ..|.+  .+.+|+++++.+.+.  .+    ..+.+.+. +.||++++++.+.++..+++   .+.+.   +|+  ++++|
T Consensus       160 ~~l~~--~g~~Vtlv~~~~~~~--~~----~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D  231 (311)
T 2q0l_A          160 IYLAN--ICKKVYLIHRRDGFR--CA----PITLEHAKNNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVP  231 (311)
T ss_dssp             HHHHT--TSSEEEEECSSSSCC--SC----HHHHHHHHTCTTEEEETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECS
T ss_pred             HHHHh--cCCEEEEEeeCCccC--CC----HHHHHHHhhCCCeEEEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecC
Confidence            99985  488999999987752  22    23445554 57999999999998876633   35554   665  79999


Q ss_pred             EEEEccCCCCCchhhhccc--cccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHc
Q 017664          227 CHFMCTGKAMASSWLRETI--LKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMM  304 (368)
Q Consensus       227 ~vi~a~G~~p~~~~~~~~~--l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~  304 (368)
                      .+|+++|++|+.+++...+  .++.++++|++.||+++|+ +.|||||+|||+..+ ++++..|.+||+.||.||.+.|.
T Consensus       232 ~vi~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd~~~~t-~~~~vya~GD~~~~~-~~~~~~A~~~g~~aa~~i~~~l~  309 (311)
T 2q0l_A          232 GFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSMKT-NVQGLFAAGDIRIFA-PKQVVCAASDGATAALSVISYLE  309 (311)
T ss_dssp             EEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBC-SSTTEEECSTTBTTC-CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecCccChhhhhcccccceeEeccCCCEEeCCcccc-CCCCeEEcccccCcc-hHHHHHHHHhHHHHHHHHHHHHh
Confidence            9999999999998887653  1236678899999999998 899999999999863 45889999999999999999886


Q ss_pred             C
Q 017664          305 G  305 (368)
Q Consensus       305 g  305 (368)
                      +
T Consensus       310 ~  310 (311)
T 2q0l_A          310 H  310 (311)
T ss_dssp             C
T ss_pred             h
Confidence            5

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=100.00  E-value=3.9e-37  Score=281.74  Aligned_cols=283  Identities=16%  Similarity=0.180  Sum_probs=202.4

Q ss_pred             cCCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC----ceeeeccceeeee-cccccc-----cceeeccccc--
Q 017664           11 AGLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE----YFEITWASLRAVV-EPSFAV-----RSVINHGDYL--   77 (368)
Q Consensus        11 ~~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~----~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~--   77 (368)
                      +.+.+++||+|||||++||++|..|+ +|++|+|||+++    ..+..+....... .+.+..     +......++.  
T Consensus        17 ~~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (338)
T 3itj_A           17 RGSHVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTK   96 (338)
T ss_dssp             ----CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHH
Confidence            34446789999999999999999998 599999999965    3443332211100 011110     0000011111  


Q ss_pred             CceeEEEeEEEEeecc----EEEe---cCCeEEEecEEEEecCCCCCCCCchHHH------HHHHHHHHHH--HhcCCeE
Q 017664           78 SNVKIVVSTAVSITDT----EVVT---AGGQTFVYDYVVVATGHVESVPKSRTER------LSQYEKDFEK--VKSANSV  142 (368)
Q Consensus        78 ~~~~~~~~~~~~~~~~----~v~~---~~g~~~~~d~lvlAtG~~~~~p~~~~~~------~~~~~~~~~~--~~~~~~v  142 (368)
                      .++++....+..++..    .+.+   .++..+.||+||+|||+.|..|+++...      +.........  ...++++
T Consensus        97 ~gv~i~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v  176 (338)
T 3itj_A           97 FGTEIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKRMHLPGEETYWQKGISACAVCDGAVPIFRNKPL  176 (338)
T ss_dssp             TTCEEECSCEEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEE
T ss_pred             cCCEEEEeEEEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcCCCCCCCchhccCccEEEchhcccchhhcCCCEE
Confidence            2677777667777643    3333   3667899999999999997766654322      1111222222  3468999


Q ss_pred             EEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHc-CCcEEEecceeeecccCCC---eEEcC
Q 017664          143 LIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTS-KKVEVILNQSVTLNTISDG---LIETS  218 (368)
Q Consensus       143 ~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~---~v~~~  218 (368)
                      +|||+|++|+|+|..|.+  .+.+|+++++.+.+.+      ...+.+.+.+ .||++++++.+.+++.+++   .+.+.
T Consensus       177 ~vvG~G~~g~e~a~~l~~--~g~~v~~v~~~~~~~~------~~~~~~~l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~  248 (338)
T 3itj_A          177 AVIGGGDSACEEAQFLTK--YGSKVFMLVRKDHLRA------STIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIK  248 (338)
T ss_dssp             EEECSSHHHHHHHHHHTT--TSSEEEEECSSSSCCS------CHHHHHHHHHCTTEEEECSEEEEEEEESSSSEEEEEEE
T ss_pred             EEECCCHHHHHHHHHHHh--cCCEEEEEEcCCccCC------CHHHHHHHHhcCCeEEeecceeEEEEcccCcEEEEEEE
Confidence            999999999999999985  4889999999887643      3445566655 4999999999999987664   36555


Q ss_pred             C-----CcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEe-CCCeeecCCCCeEEecccCCCCccchHHHHHHHH
Q 017664          219 S-----GETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMV-DENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHA  292 (368)
Q Consensus       219 ~-----g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~v-d~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g  292 (368)
                      +     ++++++|.||+|+|+.|+.+++.. ++  .++++|++.+ |+++++ +.|||||+|||+.. .++.+..|+.||
T Consensus       249 ~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~l--~~~~~G~i~v~~~~~~t-~~~~vya~GD~~~~-~~~~~~~A~~~g  323 (338)
T 3itj_A          249 NTKKNEETDLPVSGLFYAIGHTPATKIVAG-QV--DTDEAGYIKTVPGSSLT-SVPGFFAAGDVQDS-KYRQAITSAGSG  323 (338)
T ss_dssp             ETTTTEEEEEECSEEEECSCEEECCGGGBT-TB--CBCTTSCBCCCTTSSBC-SSTTEEECGGGGCS-SCCCHHHHHHHH
T ss_pred             ECCCCceEEEEeCEEEEEeCCCCChhHhhC-ce--EecCCCcEEEcCccccc-CCCCEEEeeccCCC-Cccceeeehhhh
Confidence            4     468999999999999999988876 44  6788999985 778887 89999999999975 345789999999


Q ss_pred             HHHHHHHHHHHcCC
Q 017664          293 LVTAKNLKKLMMGR  306 (368)
Q Consensus       293 ~~aa~~i~~~l~g~  306 (368)
                      +.||.||.+.|.++
T Consensus       324 ~~aa~~i~~~l~~~  337 (338)
T 3itj_A          324 CMAALDAEKYLTSL  337 (338)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999999875

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=100.00  E-value=1.4e-36  Score=278.06  Aligned_cols=286  Identities=17%  Similarity=0.210  Sum_probs=206.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceee----eeccccc---ccce-eeccccc--CceeE
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRA----VVEPSFA---VRSV-INHGDYL--SNVKI   82 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~----~~~~~~~---~~~~-~~~~~~~--~~~~~   82 (368)
                      ++++||+|||||+||+++|..|+ +|++|+|||+++.+++.|.....    ...+.+.   ...+ ....+..  .++++
T Consensus         3 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   82 (335)
T 2zbw_A            3 ADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVY   82 (335)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEE
T ss_pred             CCcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEE
Confidence            45689999999999999999997 59999999999887654421100    0000000   0000 0001111  13444


Q ss_pred             E-EeEEEEeecc----EEEecCCeEEEecEEEEecCCC---CCCCCchHHH------HHHHHHHHHHHhcCCeEEEEcCc
Q 017664           83 V-VSTAVSITDT----EVVTAGGQTFVYDYVVVATGHV---ESVPKSRTER------LSQYEKDFEKVKSANSVLIVGGG  148 (368)
Q Consensus        83 ~-~~~~~~~~~~----~v~~~~g~~~~~d~lvlAtG~~---~~~p~~~~~~------~~~~~~~~~~~~~~~~v~VvG~g  148 (368)
                      . +..+..++..    .+.+.++..+.||+||+|||+.   |..|+++...      +....... ....+++++|||+|
T Consensus        83 ~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~~~~i~g~~~~~~~~~~~~~~~~-~~~~~~~v~viG~G  161 (335)
T 2zbw_A           83 SLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYAVKSK-AEFQGKRVLIVGGG  161 (335)
T ss_dssp             EESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEECCCCCTTTTTTBTTTEESSCSCG-GGGTTCEEEEECSS
T ss_pred             EeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCCCCCCCCChhhccCcEEEEecCch-hhcCCCEEEEECCC
Confidence            3 3355555432    4666777789999999999994   5544433211      10100000 12257999999999


Q ss_pred             hhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcC---CC--c
Q 017664          149 PTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETS---SG--E  221 (368)
Q Consensus       149 ~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~---~g--~  221 (368)
                      ++|+|+|..|.+  .+.+|+++++.+.+.+  .+...+.+.+.+++.||++++++.+.+++.+++  .+.+.   +|  +
T Consensus       162 ~~g~e~a~~l~~--~g~~V~~v~~~~~~~~--~~~~~~~l~~~l~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~  237 (335)
T 2zbw_A          162 DSAVDWALNLLD--TARRITLIHRRPQFRA--HEASVKELMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEEL  237 (335)
T ss_dssp             HHHHHHHHHTTT--TSSEEEEECSSSSCCS--CHHHHHHHHHHHHTTSSEEETTEEEEEEEESSSEEEEEEEETTTCCEE
T ss_pred             HHHHHHHHHHHh--hCCEEEEEEcCCccCc--cHHHHHHHHhccccCCeEEecCCcceeEccCCCeeEEEEEECCCCceE
Confidence            999999999984  4789999999887654  246677888889999999999999999887544  46654   66  5


Q ss_pred             EEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCC-ccchHHHHHHHHHHHHHHHH
Q 017664          222 TIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIP-EIKQGYLAQKHALVTAKNLK  300 (368)
Q Consensus       222 ~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~-~~~~~~~a~~~g~~aa~~i~  300 (368)
                      ++++|.+|+++|++|+.+++...++  ..+ +|++.||+++|+ +.|||||+|||+..+ .++++..|..||+.+|+||.
T Consensus       238 ~i~~D~vi~a~G~~p~~~~l~~~~~--~~~-~g~i~vd~~~~t-~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~  313 (335)
T 2zbw_A          238 ALEVDAVLILAGYITKLGPLANWGL--ALE-KNKIKVDTTMAT-SIPGVYACGDIVTYPGKLPLIVLGFGEAAIAANHAA  313 (335)
T ss_dssp             EEECSEEEECCCEEEECGGGGGSCC--CEE-TTEEECCTTCBC-SSTTEEECSTTEECTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             EEecCEEEEeecCCCCchHhhhcce--ecc-CCeeeeCCCCCC-CCCCEEEeccccccCcchhhhhhhHHHHHHHHHHHH
Confidence            8999999999999999888877655  444 689999999998 899999999999754 34688999999999999999


Q ss_pred             HHHcCCCC
Q 017664          301 KLMMGRNK  308 (368)
Q Consensus       301 ~~l~g~~~  308 (368)
                      +.+.+...
T Consensus       314 ~~l~~~~~  321 (335)
T 2zbw_A          314 AYANPALK  321 (335)
T ss_dssp             HHHCTTSC
T ss_pred             HHhhhhhc
Confidence            99987654

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=100.00  E-value=1.9e-36  Score=279.91  Aligned_cols=289  Identities=20%  Similarity=0.236  Sum_probs=205.3

Q ss_pred             CcCCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceee----eeccccc---ccce-eeccccc--C
Q 017664           10 AAGLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRA----VVEPSFA---VRSV-INHGDYL--S   78 (368)
Q Consensus        10 ~~~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~----~~~~~~~---~~~~-~~~~~~~--~   78 (368)
                      ...|++++||+||||||+|+++|..|+ +|++|+|||+++.+++.+.....    ...+.+.   ...+ ....+..  .
T Consensus         8 ~~~~~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   87 (360)
T 3ab1_A            8 ATDHHDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERY   87 (360)
T ss_dssp             -----CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTT
T ss_pred             ccccCCCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence            344566789999999999999999997 59999999999877654421100    0000000   0000 0000000  1


Q ss_pred             ceeEEE-eEEEEeec--c---EEEecCCeEEEecEEEEecCCC---CCCCCchH--HHH-----HHHHHHHHHHhcCCeE
Q 017664           79 NVKIVV-STAVSITD--T---EVVTAGGQTFVYDYVVVATGHV---ESVPKSRT--ERL-----SQYEKDFEKVKSANSV  142 (368)
Q Consensus        79 ~~~~~~-~~~~~~~~--~---~v~~~~g~~~~~d~lvlAtG~~---~~~p~~~~--~~~-----~~~~~~~~~~~~~~~v  142 (368)
                      ++++.. ..+..++.  +   .+.+.++..+.||+||+|||+.   |..|+++.  ..+     ....... ....++++
T Consensus        88 ~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~~~~i~g~~~~~~~~~v~~~~~~~-~~~~~~~v  166 (360)
T 3ab1_A           88 NPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYAVKSV-EDFKGKRV  166 (360)
T ss_dssp             CCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBCCCGGGCCCTTTBTTTEESSCSCG-GGGTTCEE
T ss_pred             CCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCCCCCCCCCchhhCcCceEEEecCCH-HHcCCCcE
Confidence            344433 35555543  2   5777788889999999999994   54444332  111     0100000 12247899


Q ss_pred             EEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEc--
Q 017664          143 LIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIET--  217 (368)
Q Consensus       143 ~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~--  217 (368)
                      +|||+|++|+|+|..|.+  .+.+|+++++.+.+.+.  +...+.+.+.+++.||++++++.+.+++.+++   .+.+  
T Consensus       167 vVvG~G~~g~e~A~~l~~--~g~~V~lv~~~~~~~~~--~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~  242 (360)
T 3ab1_A          167 VIVGGGDSALDWTVGLIK--NAASVTLVHRGHEFQGH--GKTAHEVERARANGTIDVYLETEVASIEESNGVLTRVHLRS  242 (360)
T ss_dssp             EEECSSHHHHHHHHHTTT--TSSEEEEECSSSSCSSC--SHHHHSSHHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEE
T ss_pred             EEECCCHHHHHHHHHHHh--cCCEEEEEEcCCCCCCC--HHHHHHHHHHhhcCceEEEcCcCHHHhccCCCceEEEEEEe
Confidence            999999999999999885  48899999998876542  45667778888899999999999999887644   4555  


Q ss_pred             CCC--cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCC-ccchHHHHHHHHHH
Q 017664          218 SSG--ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIP-EIKQGYLAQKHALV  294 (368)
Q Consensus       218 ~~g--~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~-~~~~~~~a~~~g~~  294 (368)
                      .+|  +++++|.+|+|+|+.|+.+++...++  ..+ +|++.||+++|+ +.|+|||+|||+..+ .++++..|..||+.
T Consensus       243 ~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~--~~~-~g~i~vd~~~~t-~~~~vya~GD~~~~~~~~~~~~~A~~~g~~  318 (360)
T 3ab1_A          243 SDGSKWTVEADRLLILIGFKSNLGPLARWDL--ELY-ENALVVDSHMKT-SVDGLYAAGDIAYYPGKLKIIQTGLSEATM  318 (360)
T ss_dssp             TTCCEEEEECSEEEECCCBCCSCGGGGGSSC--CEE-TTEEECCTTSBC-SSTTEEECSTTEECTTCCCSHHHHHHHHHH
T ss_pred             cCCCeEEEeCCEEEECCCCCCCHHHHHhhcc--ccc-cCeeeecCCCcC-CCCCEEEecCccCCCCccceeehhHHHHHH
Confidence            367  58999999999999999888876655  444 689999999998 899999999999754 35688999999999


Q ss_pred             HHHHHHHHHcCCC
Q 017664          295 TAKNLKKLMMGRN  307 (368)
Q Consensus       295 aa~~i~~~l~g~~  307 (368)
                      ||+||.+.+.+..
T Consensus       319 aa~~i~~~l~~~~  331 (360)
T 3ab1_A          319 AVRHSLSYIKPGE  331 (360)
T ss_dssp             HHHHHHHHHSCC-
T ss_pred             HHHHHHhhcCCcc
Confidence            9999999998764

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=100.00  E-value=6.5e-36  Score=270.59  Aligned_cols=277  Identities=22%  Similarity=0.265  Sum_probs=200.0

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccceee---eecccc-cccce-eeccccc--CceeEEEe-E
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLRA---VVEPSF-AVRSV-INHGDYL--SNVKIVVS-T   86 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~~---~~~~~~-~~~~~-~~~~~~~--~~~~~~~~-~   86 (368)
                      ++||+||||||+|+++|..|++ |++|+|||+.  .+..+.....   ...... ....+ ....+++  .+++++.. +
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~--~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   78 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQS   78 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC--CCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCE
Confidence            3799999999999999999985 9999999864  3322221100   000000 00000 0111111  25677766 6


Q ss_pred             EEEeec-------cEEEecCCeEEEecEEEEecCCCCCCCCchH------HHHHHHHHHHHHHhcCCeEEEEcCchhHHH
Q 017664           87 AVSITD-------TEVVTAGGQTFVYDYVVVATGHVESVPKSRT------ERLSQYEKDFEKVKSANSVLIVGGGPTGVE  153 (368)
Q Consensus        87 ~~~~~~-------~~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~------~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e  153 (368)
                      +..++.       ..+.+.++..+.||+||+|||+.|..|+++.      ..+..+.........+++++|+|+|++|+|
T Consensus        79 v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e  158 (310)
T 1fl2_A           79 ASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVE  158 (310)
T ss_dssp             EEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGGGGBTCEEEEECCSHHHHH
T ss_pred             EEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChhhcccceeEEeccCcHhhcCCCEEEEECCCHHHHH
Confidence            777753       2567778888999999999999865554322      112222222234456899999999999999


Q ss_pred             HHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHc-CCcEEEecceeeecccCCC---eEEcC---CCc--EEe
Q 017664          154 LAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTS-KKVEVILNQSVTLNTISDG---LIETS---SGE--TID  224 (368)
Q Consensus       154 ~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~---~v~~~---~g~--~i~  224 (368)
                      +|..|.+  .+.+|+++++.+.+.  .+    ..+.+.+++ .||++++++.+.++..+++   .+++.   +|+  +++
T Consensus       159 ~A~~l~~--~g~~Vtlv~~~~~~~--~~----~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~  230 (310)
T 1fl2_A          159 AAIDLAG--IVEHVTLLEFAPEMK--AD----QVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIE  230 (310)
T ss_dssp             HHHHHHT--TBSEEEEECSSSSCC--SC----HHHHHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEE
T ss_pred             HHHHHHH--hCCEEEEEEeCcccC--cc----HHHHHHHhhCCCeEEecCCceEEEEcCCCcEEEEEEEECCCCcEEEEE
Confidence            9999984  578999999988752  22    345566776 6999999999999886644   35543   353  789


Q ss_pred             cCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHc
Q 017664          225 TDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMM  304 (368)
Q Consensus       225 ~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~  304 (368)
                      +|.+|+|+|++|+.+++... +  .++++|++.||+++|+ +.|+|||+|||+..+. +++..|..||+.||.+|.+.|.
T Consensus       231 ~D~vi~a~G~~p~~~~l~~~-l--~~~~~g~i~vd~~~~t-~~~~vya~GD~~~~~~-~~~~~A~~~g~~aa~~i~~~l~  305 (310)
T 1fl2_A          231 LAGIFVQIGLLPNTNWLEGA-V--ERNRMGEIIIDAKCET-NVKGVFAAGDCTTVPY-KQIIIATGEGAKASLSAFDYLI  305 (310)
T ss_dssp             CSEEEECSCEEESCGGGTTT-S--CBCTTSCBCCCTTCBC-SSTTEEECSTTBSCSS-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCEEEEeeCCccCchHHhcc-c--cccCCCcEEcCCCCcc-CCCCEEEeecccCCcc-hhhhhhHhhHHHHHHHHHHHHH
Confidence            99999999999998888652 3  6778899999999997 8999999999998753 4788999999999999999987


Q ss_pred             CCC
Q 017664          305 GRN  307 (368)
Q Consensus       305 g~~  307 (368)
                      ++.
T Consensus       306 ~~~  308 (310)
T 1fl2_A          306 RTK  308 (310)
T ss_dssp             HSC
T ss_pred             Hhc
Confidence            753

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=100.00  E-value=4.4e-36  Score=274.72  Aligned_cols=284  Identities=19%  Similarity=0.219  Sum_probs=201.4

Q ss_pred             cCCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeee-eccccc----ccce-eeccccc--Ccee
Q 017664           11 AGLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAV-VEPSFA----VRSV-INHGDYL--SNVK   81 (368)
Q Consensus        11 ~~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~-~~~~~~----~~~~-~~~~~~~--~~~~   81 (368)
                      +.+++++||+||||||+|+++|..|+ .|++|+|||+.. .+..+...... ..+.+.    ...+ ....++.  .+++
T Consensus         9 ~~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~   87 (335)
T 2a87_A            9 RAHHPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTS-FGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGAD   87 (335)
T ss_dssp             -CCCCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSS-CSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCE
T ss_pred             cccCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCE
Confidence            34456789999999999999999997 499999999763 33322111000 000110    0000 0111111  2566


Q ss_pred             EEEeEEEEeec---cEE-EecCCeEEEecEEEEecCCCCCCCCchHHH------HHHHHHHHHHHhcCCeEEEEcCchhH
Q 017664           82 IVVSTAVSITD---TEV-VTAGGQTFVYDYVVVATGHVESVPKSRTER------LSQYEKDFEKVKSANSVLIVGGGPTG  151 (368)
Q Consensus        82 ~~~~~~~~~~~---~~v-~~~~g~~~~~d~lvlAtG~~~~~p~~~~~~------~~~~~~~~~~~~~~~~v~VvG~g~~~  151 (368)
                      ++...+..++.   ..+ .+.+++.+.||+||+|||+.|..|+++...      ++.+.........+++++|||+|++|
T Consensus        88 ~~~~~v~~i~~~~~~~v~~~~~g~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g  167 (335)
T 2a87_A           88 LRMEDVESVSLHGPLKSVVTADGQTHRARAVILAMGAAARYLQVPGEQELLGRGVSSCATCDGFFFRDQDIAVIGGGDSA  167 (335)
T ss_dssp             EECCCEEEEECSSSSEEEEETTSCEEEEEEEEECCCEEECCCCCTHHHHTBTTTEESCHHHHGGGGTTCEEEEECSSHHH
T ss_pred             EEEeeEEEEEeCCcEEEEEeCCCCEEEeCEEEECCCCCccCCCCCchHhccCCceEEeeccchhhcCCCEEEEECCCHHH
Confidence            76666666664   256 677788899999999999997777654322      11112222234568999999999999


Q ss_pred             HHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcC---CC--cEEe
Q 017664          152 VELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETS---SG--ETID  224 (368)
Q Consensus       152 ~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~---~g--~~i~  224 (368)
                      +|+|..|.+  .+.+|+++++.+.+..  .+.+   ..+.+++.||++++++.+.+++.+++  .+.+.   +|  ++++
T Consensus       168 ~e~a~~l~~--~g~~V~l~~~~~~~~~--~~~~---~~~~~~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~  240 (335)
T 2a87_A          168 MEEATFLTR--FARSVTLVHRRDEFRA--SKIM---LDRARNNDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTGAETTLP  240 (335)
T ss_dssp             HHHHHHHTT--TCSEEEEECSSSSCSS--CTTH---HHHHHHCTTEEEECSEEEEEEECSSSCCEEEEEEETTSCCEEEC
T ss_pred             HHHHHHHHH--hCCeEEEEEcCCcCCc--cHHH---HHHHhccCCcEEEeCceeEEEecCCcEeEEEEEEcCCCceEEee
Confidence            999999984  5889999999877532  1122   12445789999999999999887654  35543   34  5899


Q ss_pred             cCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHc
Q 017664          225 TDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMM  304 (368)
Q Consensus       225 ~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~  304 (368)
                      +|.+|+|+|++|+.+++. .++  .++++|++.||++++.++.|||||+|||+..+ ++++..|..||+.||.||.+.|.
T Consensus       241 ~D~vi~a~G~~p~~~~~~-~~l--~~~~~G~i~vd~~~~~t~~~~iya~GD~~~~~-~~~~~~A~~~g~~aA~~i~~~l~  316 (335)
T 2a87_A          241 VTGVFVAIGHEPRSGLVR-EAI--DVDPDGYVLVQGRTTSTSLPGVFAAGDLVDRT-YRQAVTAAGSGCAAAIDAERWLA  316 (335)
T ss_dssp             CSCEEECSCEEECCTTTB-TTB--CBCTTSCBCCSTTSSBCSSTTEEECGGGTCCS-CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCEEEEccCCccChhHhh-ccc--ccCCCccEEeCCCCCccCCCCEEEeeecCCcc-HHHHHHHHHhHHHHHHHHHHHhh
Confidence            999999999999988876 333  56788999999974333899999999999864 45789999999999999999987


Q ss_pred             CC
Q 017664          305 GR  306 (368)
Q Consensus       305 g~  306 (368)
                      ++
T Consensus       317 ~~  318 (335)
T 2a87_A          317 EH  318 (335)
T ss_dssp             HH
T ss_pred             cC
Confidence            65

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=100.00  E-value=3.3e-36  Score=274.84  Aligned_cols=279  Identities=18%  Similarity=0.187  Sum_probs=201.9

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeecccee----eeeccccc----ccceeeccccc--CceeEE
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLR----AVVEPSFA----VRSVINHGDYL--SNVKIV   83 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~----~~~~~~~~----~~~~~~~~~~~--~~~~~~   83 (368)
                      +++||+|||||+||+++|..|+ +|++|+|||+++.+++.|....    ....+.+.    .+......++.  .++++.
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (332)
T 3lzw_A            6 KVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTIC   85 (332)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEE
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEE
Confidence            3579999999999999999997 5999999999998775542100    00000110    00001111111  145655


Q ss_pred             -EeEEEEeec--c---EEEecCCeEEEecEEEEecCC---CCCCCCchHHH------HHHHHHHHHHHhcCCeEEEEcCc
Q 017664           84 -VSTAVSITD--T---EVVTAGGQTFVYDYVVVATGH---VESVPKSRTER------LSQYEKDFEKVKSANSVLIVGGG  148 (368)
Q Consensus        84 -~~~~~~~~~--~---~v~~~~g~~~~~d~lvlAtG~---~~~~p~~~~~~------~~~~~~~~~~~~~~~~v~VvG~g  148 (368)
                       ..++..++.  +   .+.+.+++ +.||+||+|||+   .|..|+++...      ++. .........+++++|+|+|
T Consensus        86 ~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~~~~~~g~~~~~g~~~~~-~~~~~~~~~~~~v~vvG~g  163 (332)
T 3lzw_A           86 LEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHY-FVDDLQKFAGRRVAILGGG  163 (332)
T ss_dssp             CSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTSCCEECCCCCTTGGGGBTTTEES-SCSCGGGGBTCEEEEECSS
T ss_pred             ccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCCcCCCCCCCCCChhhccCceEEE-ecCCHHHcCCCEEEEECCC
Confidence             356666653  2   56676665 999999999999   66555443211      111 0001112247999999999


Q ss_pred             hhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCC-----Cc
Q 017664          149 PTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSS-----GE  221 (368)
Q Consensus       149 ~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~-----g~  221 (368)
                      .+|+|+|..|.+  .+.+|+++++.+++.+.      ....+.+++.||++++++.+.+++.+++  .+.+.+     ++
T Consensus       164 ~~~~e~a~~l~~--~~~~v~~~~~~~~~~~~------~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~  235 (332)
T 3lzw_A          164 DSAVDWALMLEP--IAKEVSIIHRRDKFRAH------EHSVENLHASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKE  235 (332)
T ss_dssp             HHHHHHHHHHTT--TBSEEEEECSSSSCSSC------HHHHHHHHHSSCEEETTEEEEEEECSSSCCEEEEEETTSCCEE
T ss_pred             HhHHHHHHHHHh--hCCeEEEEEecCcCCcc------HHHHHHHhcCCeEEEeCceeeEEecCCceEEEEEEecCCCceE
Confidence            999999999985  47899999998876432      2234557889999999999999887654  455544     45


Q ss_pred             EEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCC-ccchHHHHHHHHHHHHHHHH
Q 017664          222 TIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIP-EIKQGYLAQKHALVTAKNLK  300 (368)
Q Consensus       222 ~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~-~~~~~~~a~~~g~~aa~~i~  300 (368)
                      ++++|.+|+++|+.|+.+++...++  .. ++|++.||+++|+ +.|||||+|||+..+ .++++..|..||+.||+||.
T Consensus       236 ~~~~D~vv~a~G~~p~~~~~~~~~~--~~-~~g~i~vd~~~~t-~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~  311 (332)
T 3lzw_A          236 ILEIDDLIVNYGFVSSLGPIKNWGL--DI-EKNSIVVKSTMET-NIEGFFAAGDICTYEGKVNLIASGFGEAPTAVNNAK  311 (332)
T ss_dssp             EEECSEEEECCCEECCCGGGGGSSC--CE-ETTEEECCTTSBC-SSTTEEECGGGEECTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             EEECCEEEEeeccCCCchHHhhcCc--cc-cCCeEEeCCCCce-ecCCEEEccceecCCCCcceEeeehhhHHHHHHHHH
Confidence            7999999999999999998877666  44 5799999999998 899999999998653 45689999999999999999


Q ss_pred             HHHcCCC
Q 017664          301 KLMMGRN  307 (368)
Q Consensus       301 ~~l~g~~  307 (368)
                      +.+.++.
T Consensus       312 ~~l~~~~  318 (332)
T 3lzw_A          312 AYMDPKA  318 (332)
T ss_dssp             HHHCTTS
T ss_pred             HhhChhh
Confidence            9998764

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=100.00  E-value=1e-35  Score=271.96  Aligned_cols=279  Identities=18%  Similarity=0.218  Sum_probs=197.6

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcC----CCceeeeccceeeee-cccccc----cce-eeccccc--Ccee
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDE----KEYFEITWASLRAVV-EPSFAV----RSV-INHGDYL--SNVK   81 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~----~~~~~~~~~~~~~~~-~~~~~~----~~~-~~~~~~~--~~~~   81 (368)
                      +++||+||||||+|+++|..|+ .|++|+|+|+    ....+..+....... .+.+..    ..+ ....++.  .+++
T Consensus         7 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~   86 (333)
T 1vdc_A            7 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTT   86 (333)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCE
Confidence            4589999999999999999998 4999999998    333332221110000 011100    000 0011111  2567


Q ss_pred             EEEeEEEEeecc----EEEecCCeEEEecEEEEecCCCCCCCCchH----------HHHHHHHHHHHHH--hcCCeEEEE
Q 017664           82 IVVSTAVSITDT----EVVTAGGQTFVYDYVVVATGHVESVPKSRT----------ERLSQYEKDFEKV--KSANSVLIV  145 (368)
Q Consensus        82 ~~~~~~~~~~~~----~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~----------~~~~~~~~~~~~~--~~~~~v~Vv  145 (368)
                      ++...+..++..    ++.+ ++..++||+||+|||+.|..|+++.          ..++.+.......  ..+++++|+
T Consensus        87 ~~~~~v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv  165 (333)
T 1vdc_A           87 IFTETVTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAKRLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVI  165 (333)
T ss_dssp             EECCCCCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEECCCCCBTCSSSSSCCBTTTEESCHHHHTTSGGGTTSEEEEE
T ss_pred             EEEeEEEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcCCCCCCCccccccccccCcEEEeccCccchhhcCCCeEEEE
Confidence            766666666642    4555 7788999999999999866554332          1111112222222  568999999


Q ss_pred             cCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHH-HHHHcCCcEEEecceeeecccCC---C--eEEcC-
Q 017664          146 GGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIAL-DWLTSKKVEVILNQSVTLNTISD---G--LIETS-  218 (368)
Q Consensus       146 G~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~-~~l~~~gv~i~~~~~v~~i~~~~---~--~v~~~-  218 (368)
                      |+|++|+|+|..|.+  .+.+|+++++.+.+..      ...+. +.+++.||++++++.+.+++.++   .  .+.+. 
T Consensus       166 G~G~~g~e~A~~l~~--~g~~V~lv~~~~~~~~------~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~  237 (333)
T 1vdc_A          166 GGGDSAMEEANFLTK--YGSKVYIIHRRDAFRA------SKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKN  237 (333)
T ss_dssp             CCSHHHHHHHHHHTT--TSSEEEEECSSSSCCS------CHHHHHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEE
T ss_pred             CCChHHHHHHHHHHh--cCCeEEEEecCCcCCc------cHHHHHHHHhCCCeeEecCCceEEEeCCCCccceeeEEEEe
Confidence            999999999999984  4789999999876532      22333 45678999999999999988765   2  25553 


Q ss_pred             --CC--cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCe-eecCCCCeEEecccCCCCccchHHHHHHHHH
Q 017664          219 --SG--ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENL-RVRGFKNVFAIGDITDIPEIKQGYLAQKHAL  293 (368)
Q Consensus       219 --~g--~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~-~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~  293 (368)
                        +|  +++++|.+|+++|++|+.+++. .++  .++++|++.||+++ ++ +.|+|||+|||+..+ ++++..|..||+
T Consensus       238 ~~~g~~~~i~~D~vi~a~G~~p~~~~~~-~~l--~~~~~G~i~vd~~~~~t-~~~~vya~GD~~~~~-~~~~~~A~~~g~  312 (333)
T 1vdc_A          238 VVTGDVSDLKVSGLFFAIGHEPATKFLD-GGV--ELDSDGYVVTKPGTTQT-SVPGVFAAGDVQDKK-YRQAITAAGTGC  312 (333)
T ss_dssp             TTTCCEEEEECSEEEECSCEEESCGGGT-TSS--CBCTTSCBCCCTTSCBC-SSTTEEECGGGGCSS-CCCHHHHHHHHH
T ss_pred             cCCCceEEEecCEEEEEeCCccchHHhh-ccc--cccCCCCEEechhhccc-CCCCEEEeeeccCCC-chhHHHHHHhHH
Confidence              45  5799999999999999998876 333  56788999999975 65 899999999999864 457899999999


Q ss_pred             HHHHHHHHHHcCCC
Q 017664          294 VTAKNLKKLMMGRN  307 (368)
Q Consensus       294 ~aa~~i~~~l~g~~  307 (368)
                      .||.+|.+.|.+++
T Consensus       313 ~aa~~i~~~l~~~~  326 (333)
T 1vdc_A          313 MAALDAEHYLQEIG  326 (333)
T ss_dssp             HHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999998765

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=100.00  E-value=2.9e-34  Score=277.01  Aligned_cols=278  Identities=21%  Similarity=0.247  Sum_probs=200.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeecccee---eeecccc-cccce-eecccc--cCceeEEEe
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLR---AVVEPSF-AVRSV-INHGDY--LSNVKIVVS   85 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~---~~~~~~~-~~~~~-~~~~~~--~~~~~~~~~   85 (368)
                      ...+||+||||||||+++|.+|+ +|++|+|+|+.  +|+.+....   ....... ....+ ....+.  ..+++++..
T Consensus       210 ~~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~  287 (521)
T 1hyu_A          210 RDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGER--FGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDS  287 (521)
T ss_dssp             SCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS--TTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECS
T ss_pred             cCcccEEEECCcHHHHHHHHHHHhCCCeEEEEECC--CCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcC
Confidence            34689999999999999999997 59999999874  333222110   0000000 00000 001111  125777766


Q ss_pred             -EEEEeec-------cEEEecCCeEEEecEEEEecCCCCCCCCchHH------HHHHHHHHHHHHhcCCeEEEEcCchhH
Q 017664           86 -TAVSITD-------TEVVTAGGQTFVYDYVVVATGHVESVPKSRTE------RLSQYEKDFEKVKSANSVLIVGGGPTG  151 (368)
Q Consensus        86 -~~~~~~~-------~~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~~------~~~~~~~~~~~~~~~~~v~VvG~g~~~  151 (368)
                       ++..++.       ..+.+.+|..+.||+||+|||+.|..|++++.      .+..+.........+++++|||+|++|
T Consensus       288 ~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~V~ViGgG~~g  367 (521)
T 1hyu_A          288 QSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSG  367 (521)
T ss_dssp             CCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTTTTTTTTEECCTTCCGGGGBTSEEEEECCSHHH
T ss_pred             CEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCCCCCCChhhhcCceEEEeecCchhhcCCCeEEEECCCHHH
Confidence             6777753       25777788889999999999998655443321      111111111233468999999999999


Q ss_pred             HHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHc-CCcEEEecceeeecccCCC---eEEcC---CCc--E
Q 017664          152 VELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTS-KKVEVILNQSVTLNTISDG---LIETS---SGE--T  222 (368)
Q Consensus       152 ~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~---~v~~~---~g~--~  222 (368)
                      +|+|..|.+.  +.+|+++++.+.+..  +    ..+.+.+++ .||++++++.++++..+++   .+.+.   +|+  +
T Consensus       368 ~E~A~~L~~~--g~~Vtlv~~~~~l~~--~----~~l~~~l~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~  439 (521)
T 1hyu_A          368 VEAAIDLAGI--VEHVTLLEFAPEMKA--D----QVLQDKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHS  439 (521)
T ss_dssp             HHHHHHHHHH--BSEEEEECSSSSCCS--C----HHHHHHHTTCTTEEEECSEEEEEEEECSSSEEEEEEEETTTCCEEE
T ss_pred             HHHHHHHHhh--CCEEEEEEeCcccCc--C----HHHHHHHhcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeCCCCceEE
Confidence            9999999863  789999999887642  1    446667777 6999999999999887644   34443   353  7


Q ss_pred             EecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHH
Q 017664          223 IDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKL  302 (368)
Q Consensus       223 i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~  302 (368)
                      +++|.+++++|++|+.+++.. .  +.++++|++.||+++|| +.|||||+|||+..+ .+++..|+.+|+.||.+|.++
T Consensus       440 i~~D~vi~a~G~~pn~~~l~~-~--l~~~~~G~I~Vd~~~~t-s~p~VfA~GD~~~~~-~~~~~~A~~~g~~aa~~i~~~  514 (521)
T 1hyu_A          440 VALAGIFVQIGLLPNTHWLEG-A--LERNRMGEIIIDAKCET-SVKGVFAAGDCTTVP-YKQIIIATGEGAKASLSAFDY  514 (521)
T ss_dssp             EECSEEEECCCEEESCGGGTT-T--SCBCTTSCBCCCTTCBC-SSTTEEECSTTBCCS-SCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEcCEEEECcCCCCCchHHhh-h--hccCCCCcEEeCCCCCC-CCCCEEEeecccCCC-cceeeehHHhHHHHHHHHHHH
Confidence            899999999999999988875 2  36788899999999998 899999999999875 357899999999999999998


Q ss_pred             HcCC
Q 017664          303 MMGR  306 (368)
Q Consensus       303 l~g~  306 (368)
                      |.++
T Consensus       515 L~~~  518 (521)
T 1hyu_A          515 LIRT  518 (521)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            8664

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=100.00  E-value=4.9e-35  Score=277.03  Aligned_cols=276  Identities=18%  Similarity=0.128  Sum_probs=187.1

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccc-eeeeecccccccceeeccccc--CceeEEEeEEEE
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWAS-LRAVVEPSFAVRSVINHGDYL--SNVKIVVSTAVS   89 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~   89 (368)
                      .+.+||+|||||||||++|..|++ |++|+|||+++.+|+.+.. +..   ............+++  .+++++....+.
T Consensus       120 ~~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~gip~---~~~~~~~~~~~~~~l~~~gv~~~~~~~v~  196 (456)
T 2vdc_G          120 ELGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYGIPG---FKLEKSVVERRVKLLADAGVIYHPNFEVG  196 (456)
T ss_dssp             SCCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHTSCT---TTSCHHHHHHHHHHHHHTTCEEETTCCBT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeecCCC---ccCCHHHHHHHHHHHHHCCcEEEeCCEec
Confidence            457899999999999999999985 9999999999877643221 100   001111111111111  145554433221


Q ss_pred             eeccEEEecCCeEEEecEEEEecCCC-C---CCCCchHHHHHH---HHHHH------H---------HHhcCCeEEEEcC
Q 017664           90 ITDTEVVTAGGQTFVYDYVVVATGHV-E---SVPKSRTERLSQ---YEKDF------E---------KVKSANSVLIVGG  147 (368)
Q Consensus        90 ~~~~~v~~~~g~~~~~d~lvlAtG~~-~---~~p~~~~~~~~~---~~~~~------~---------~~~~~~~v~VvG~  147 (368)
                         ..+.+.+. .+.||+||+|||+. |   .+|+.....+..   +....      .         ....+++|+|||+
T Consensus       197 ---~~v~~~~~-~~~~d~vvlAtG~~~~~~~~ipG~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGg  272 (456)
T 2vdc_G          197 ---RDASLPEL-RRKHVAVLVATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGG  272 (456)
T ss_dssp             ---TTBCHHHH-HSSCSEEEECCCCCEECCTTCSCCTTTTEEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECS
T ss_pred             ---cEEEhhHh-HhhCCEEEEecCCCCCCCCCCCCCcCCCcEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECC
Confidence               12222222 25699999999997 3   344433222111   11100      0         0134789999999


Q ss_pred             chhHHHHHHHHhhhCCCCeEEEEecCccc-ccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEc-------
Q 017664          148 GPTGVELAGEIAVDFPDKKVILVHRGPKL-LEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIET-------  217 (368)
Q Consensus       148 g~~~~e~a~~l~~~~~~~~v~~i~~~~~~-l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~-------  217 (368)
                      |++|+|+|..+.+ ....+|++++|++.. ++..+.     ..+.+++.||++++++.+.++..++.  .+++       
T Consensus       273 G~~a~d~A~~~~r-~Ga~~Vtiv~r~~~~~~p~~~~-----e~~~~~~~Gv~~~~~~~~~~i~~~g~v~~v~~~~~~~~~  346 (456)
T 2vdc_G          273 GDTAMDCVRTAIR-QGATSVKCLYRRDRKNMPGSQR-----EVAHAEEEGVEFIWQAAPEGFTGDTVVTGVRAVRIHLGV  346 (456)
T ss_dssp             SHHHHHHHHHHHH-TTCSEEEEECSSCSTTCSSCHH-----HHHHHHHTTCEEECCSSSCCEEEEEEEETTEEEEEEEEE
T ss_pred             ChhHHHHHHHHHH-cCCCEEEEEEeCCccCCCCCHH-----HHHHHHHCCCEEEeCCCceEEeCCCcEEEEEEEEEEecc
Confidence            9999999998875 223469999998765 443322     24567888999999999887764321  1121       


Q ss_pred             --C---------CC--cEEecCEEEEccCCCCCch--hhhccccccccCCCCcEEeCCC-eeecCCCCeEEecccCCCCc
Q 017664          218 --S---------SG--ETIDTDCHFMCTGKAMASS--WLRETILKDSLDGRGRLMVDEN-LRVRGFKNVFAIGDITDIPE  281 (368)
Q Consensus       218 --~---------~g--~~i~~d~vi~a~G~~p~~~--~~~~~~l~~~~~~~g~i~vd~~-~~~~~~~~ifa~GD~~~~~~  281 (368)
                        .         +|  +++++|.||+|+|+.|+..  ++...++  .++++|++.||++ +|| +.|+|||+|||+..+ 
T Consensus       347 ~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~~~gl--~~~~~G~i~vd~~~~~T-s~~~VfA~GD~~~g~-  422 (456)
T 2vdc_G          347 ADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDEPEL--KVTRWGTLLVDHRTKMT-NMDGVFAAGDIVRGA-  422 (456)
T ss_dssp             EEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHSTTS--CBCTTSSBCCCTTTCBC-SSTTEEECGGGGSSC-
T ss_pred             cCCcCCccccccCCcEEEEECCEEEECCCCCCCcchhhcccCCe--eECCCCCEEECCCCCcC-CCCCEEEeccccCCc-
Confidence              1         23  4799999999999999865  6665554  6788999999997 997 899999999998765 


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHcCCC
Q 017664          282 IKQGYLAQKHALVTAKNLKKLMMGRN  307 (368)
Q Consensus       282 ~~~~~~a~~~g~~aa~~i~~~l~g~~  307 (368)
                       +++..|+.||+.||.+|.++|.++.
T Consensus       423 -~~v~~A~~~G~~aA~~i~~~L~~~~  447 (456)
T 2vdc_G          423 -SLVVWAIRDGRDAAEGIHAYAKAKA  447 (456)
T ss_dssp             -CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHHHHHHHHHhhcCC
Confidence             4789999999999999999998753

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=100.00  E-value=2.6e-34  Score=266.39  Aligned_cols=293  Identities=17%  Similarity=0.247  Sum_probs=197.2

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCC-cEEEEcCCCceeeecccee---eeecccc------------------------
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFA-DVVLIDEKEYFEITWASLR---AVVEPSF------------------------   65 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~-~v~lie~~~~~~~~~~~~~---~~~~~~~------------------------   65 (368)
                      +++||+|||||++|+++|..|+ .|. +|+|||+++ +|..|....   ....+.+                        
T Consensus         3 ~~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~   81 (369)
T 3d1c_A            3 QHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFN   81 (369)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHC
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccccCcccccccCcchhcccCCchhhhhcccccccccccc
Confidence            3589999999999999999998 488 999999997 443221100   0000000                        


Q ss_pred             ---cc-cceee-ccccc--CceeEEEe-EEEEeecc----EEEecCCeEEEecEEEEecCCC--CCCCCchHHHHHHHHH
Q 017664           66 ---AV-RSVIN-HGDYL--SNVKIVVS-TAVSITDT----EVVTAGGQTFVYDYVVVATGHV--ESVPKSRTERLSQYEK  131 (368)
Q Consensus        66 ---~~-~~~~~-~~~~~--~~~~~~~~-~~~~~~~~----~v~~~~g~~~~~d~lvlAtG~~--~~~p~~~~~~~~~~~~  131 (368)
                         .. ..+.. ...+.  .+++++.. .+..++..    .+.+.++ .+.||+||+|||+.  |.+|+  ...+ +...
T Consensus        82 ~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~p~ip~--~~~~-~~~~  157 (369)
T 3d1c_A           82 EEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYNFPKKPF--KYGI-HYSE  157 (369)
T ss_dssp             CSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTTSBCCCS--SSCE-EGGG
T ss_pred             ccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCCccCCCC--Ccee-chhh
Confidence               00 00000 00111  14566544 46656532    5666555 68999999999997  55664  1111 1111


Q ss_pred             HHH-HHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-------cCchhHHHHHHHHHcCC-cEEEec
Q 017664          132 DFE-KVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF-------VGSRASQIALDWLTSKK-VEVILN  202 (368)
Q Consensus       132 ~~~-~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~-------~~~~~~~~~~~~l~~~g-v~i~~~  202 (368)
                      ... .....++++|||+|++|+|+|..|.+  .+.+|+++++.+.+++.       +++...+.+.+.+++.| |+++++
T Consensus       158 ~~~~~~~~~~~vvVvG~G~~g~e~a~~l~~--~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~g~v~~~~~  235 (369)
T 3d1c_A          158 IEDFDNFNKGQYVVIGGNESGFDAAYQLAK--NGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNVH  235 (369)
T ss_dssp             CSCGGGSCSSEEEEECCSHHHHHHHHHHHH--TTCEEEEECC----------CTTSCCHHHHHHHHHHHHTTCCEEEECS
T ss_pred             cCChhhcCCCEEEEECCCcCHHHHHHHHHh--cCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHHHhhCCcEEEecC
Confidence            111 11246799999999999999999986  47899999998876631       34556688888999997 999999


Q ss_pred             ceeeecccCCC--eEEcCCCcEEe-cCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCC
Q 017664          203 QSVTLNTISDG--LIETSSGETID-TDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDI  279 (368)
Q Consensus       203 ~~v~~i~~~~~--~v~~~~g~~i~-~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~  279 (368)
                      +.|.+++.+++  .+.+.+|++++ +|.+|+++|++|+.+++....+  . +++|++.||++++.++.|||||+|||+..
T Consensus       236 ~~v~~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~~~~~~~~~~~~--~-~~~g~i~v~~~~~~t~~~~v~a~GD~~~~  312 (369)
T 3d1c_A          236 YTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIVQQLF--V-TTNQDIKLTTHDESTRYPNIFMIGATVEN  312 (369)
T ss_dssp             CCEEEEEEETTEEEEEESSSCCEEESSCCEECCCBCGGGSHHHHHHS--C-CTTSCCCBCTTSBBSSSTTEEECSTTCCC
T ss_pred             cEEEEEEecCCceEEEecCCeEeccCCceEEeeccCCccchhhhhhc--c-CCCCCEEechhhcccCCCCeEEecccccc
Confidence            99998865444  57788887665 6999999999999877665444  3 67899999997665689999999999987


Q ss_pred             Cccc--hHHHHHHHHHHHHHHHHHHHcCCCC-CCccccccC
Q 017664          280 PEIK--QGYLAQKHALVTAKNLKKLMMGRNK-GTMATYKPG  317 (368)
Q Consensus       280 ~~~~--~~~~a~~~g~~aa~~i~~~l~g~~~-~~~~~~~~~  317 (368)
                      +...  ....+.+||+.+|++|...+...+. ..+..|.|.
T Consensus       313 ~~~~~~~~~~~~~~a~~~a~~l~~~~~~p~~~~~~~~~~~~  353 (369)
T 3d1c_A          313 DNAKLCYIYKFRARFAVLAHLLTQREGLPAKQEVIENYQKN  353 (369)
T ss_dssp             SSCCCCSHHHHGGGHHHHHHHHHHHTTCCCCHHHHHHHHHT
T ss_pred             CCeeEEEEehhhHHHHHHHHHHhcccCCCCcchHHHHHHhc
Confidence            5433  2356788999999999987654332 134566553

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=100.00  E-value=6.3e-34  Score=262.19  Aligned_cols=279  Identities=18%  Similarity=0.220  Sum_probs=184.8

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceee------------eeccccc--c------cceee-
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRA------------VVEPSFA--V------RSVIN-   72 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~------------~~~~~~~--~------~~~~~-   72 (368)
                      +++||+|||||++|+++|..|+ +|++|+|||+++.++..|.....            .......  .      ..+.. 
T Consensus         2 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (357)
T 4a9w_A            2 DSVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAY   81 (357)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHH
Confidence            3579999999999999999998 59999999999887655432100            0000000  0      00000 


Q ss_pred             ccccc--CceeEEE-eEEEEeec--c--E-EEecCCeEEEecEEEEecCC--CCCCCCchHHH------HHHHHHHHHHH
Q 017664           73 HGDYL--SNVKIVV-STAVSITD--T--E-VVTAGGQTFVYDYVVVATGH--VESVPKSRTER------LSQYEKDFEKV  136 (368)
Q Consensus        73 ~~~~~--~~~~~~~-~~~~~~~~--~--~-v~~~~g~~~~~d~lvlAtG~--~~~~p~~~~~~------~~~~~~~~~~~  136 (368)
                      ..++.  .++++.. .++..++.  +  . +.+.++ .+.||+||+|||.  .|.+|.++...      ++.........
T Consensus        82 l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  160 (357)
T 4a9w_A           82 LAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTPAP  160 (357)
T ss_dssp             HHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGGGBCCCCCTTGGGCCSEEEEGGGCCCSGG
T ss_pred             HHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCCCCCCCCCCCccccCCcEEEeccCCChhh
Confidence            00000  1445543 35555543  2  3 666666 8999999999996  45455443211      11111111123


Q ss_pred             hcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC-ccccccc--CchhHHHHHHHHH--------------------
Q 017664          137 KSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRG-PKLLEFV--GSRASQIALDWLT--------------------  193 (368)
Q Consensus       137 ~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~-~~~l~~~--~~~~~~~~~~~l~--------------------  193 (368)
                      ..+++++|||+|++|+|+|..|.+.  + +|+++.+. +.+++..  ...+...+.+.++                    
T Consensus       161 ~~~~~v~VvG~G~~g~e~a~~l~~~--~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (357)
T 4a9w_A          161 FAGMRVAIIGGGNSGAQILAEVSTV--A-ETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDLPPGGFGDIVM  237 (357)
T ss_dssp             GTTSEEEEECCSHHHHHHHHHHTTT--S-EEEEECSSCCCBCCTTCCTHHHHTC----------------------CBCC
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHhh--C-CEEEEECCCCeecchhhcCccHHHHHHHHHhccccccCCCcccccccCccc
Confidence            3579999999999999999999853  4 69999987 4554432  1222222222222                    


Q ss_pred             --------cCCcEEEecceeeecccCCCeEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCC--ee
Q 017664          194 --------SKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDEN--LR  263 (368)
Q Consensus       194 --------~~gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~--~~  263 (368)
                              +.|+ +..+..+.+++.  ..+.+.+|+++++|.+|+++|++|+.+++...++  . +++|++.||++  ++
T Consensus       238 ~~~~~~~~~~g~-i~~~~~v~~~~~--~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl--~-~~~G~i~vd~~~l~~  311 (357)
T 4a9w_A          238 VPPVLDARARGV-LAAVPPPARFSP--TGMQWADGTERAFDAVIWCTGFRPALSHLKGLDL--V-TPQGQVEVDGSGLRA  311 (357)
T ss_dssp             CHHHHHHHHTTC-CCEECCCSEEET--TEEECTTSCEEECSEEEECCCBCCCCGGGTTTTC--B-CTTSCBCBCTTSCBB
T ss_pred             ChhHHHHHhcCc-eEEecCcceEeC--CeeEECCCCEecCCEEEECCCcCCCCcccCcccc--c-CCCCCccccCCcccC
Confidence                    3344 445555555543  3788999999999999999999999999887766  4 77899999999  66


Q ss_pred             ecCCCCeEEec--ccCCCCccchHHHHHHHHHHHHHHHHHHHcC
Q 017664          264 VRGFKNVFAIG--DITDIPEIKQGYLAQKHALVTAKNLKKLMMG  305 (368)
Q Consensus       264 ~~~~~~ifa~G--D~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g  305 (368)
                      + +.|||||+|  ||+. +.+++...|.+||+.+|+||.+.|.|
T Consensus       312 t-~~~~vya~Gd~d~~~-~~~~~~~~A~~~g~~~a~~i~~~l~g  353 (357)
T 4a9w_A          312 L-AVPSVWLLGYGDWNG-MASATLIGVTRYAREAVRQVTAYCAD  353 (357)
T ss_dssp             S-SCTTEEECSSCGGGS-TTCSSTTTHHHHHHHHHHHHHHHTC-
T ss_pred             C-CCCCeEEeccccccc-cchhhhhhhHHHHHHHHHHHHHHHHh
Confidence            6 899999999  5665 34457788999999999999999987

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.97  E-value=1.9e-31  Score=254.52  Aligned_cols=285  Identities=15%  Similarity=0.171  Sum_probs=184.4

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc-C-----CcEEEEcCCCceeeeccceeeeec--------------cccc--------
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS-F-----ADVVLIDEKEYFEITWASLRAVVE--------------PSFA--------   66 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~-g-----~~v~lie~~~~~~~~~~~~~~~~~--------------~~~~--------   66 (368)
                      ..+||+||||||+|+++|..|++ |     .+|+|||+++.+++....+.....              +...        
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~  108 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLH  108 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhh
Confidence            45699999999999999999974 7     999999999987744322210000              0000        


Q ss_pred             ----------------c-ccee----ecccccCceeEEE-eEEEEeecc---------EEEecCCe----EEEecEEEEe
Q 017664           67 ----------------V-RSVI----NHGDYLSNVKIVV-STAVSITDT---------EVVTAGGQ----TFVYDYVVVA  111 (368)
Q Consensus        67 ----------------~-~~~~----~~~~~~~~~~~~~-~~~~~~~~~---------~v~~~~g~----~~~~d~lvlA  111 (368)
                                      . ..+.    ...+.+ ++.+.. .++..++..         .+.+.++.    .+.||+||+|
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlA  187 (463)
T 3s5w_A          109 KHDRLVDFINLGTFYPCRMEFNDYLRWVASHF-QEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVS  187 (463)
T ss_dssp             HTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTC-TTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEEC
T ss_pred             hcCceeecccccCCCCCHHHHHHHHHHHHHHc-CCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEEC
Confidence                            0 0000    000011 234433 345555432         45555654    7999999999


Q ss_pred             cCCCCCCCCc-h---H--HHHHHHHHH--HHHH----hcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc
Q 017664          112 TGHVESVPKS-R---T--ERLSQYEKD--FEKV----KSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF  179 (368)
Q Consensus       112 tG~~~~~p~~-~---~--~~~~~~~~~--~~~~----~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~  179 (368)
                      ||+.|.+|+. .   .  ..++.....  ...+    ..+++|+|||+|.+|+|+|..|.+.+++.+|++++|.+.+++.
T Consensus       188 tG~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~  267 (463)
T 3s5w_A          188 PGGTPRIPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPA  267 (463)
T ss_dssp             CCCEECCCGGGGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBC
T ss_pred             CCCCCCCcchhhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCc
Confidence            9999888872 1   1  111111111  1112    1588999999999999999999987778999999999876542


Q ss_pred             c--------------------CchhHHHHHHHHHc--------------------------CCcEEEecceeeecccCCC
Q 017664          180 V--------------------GSRASQIALDWLTS--------------------------KKVEVILNQSVTLNTISDG  213 (368)
Q Consensus       180 ~--------------------~~~~~~~~~~~l~~--------------------------~gv~i~~~~~v~~i~~~~~  213 (368)
                      .                    +++....+.+.+..                          .||++++++.|++++.+++
T Consensus       268 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~~  347 (463)
T 3s5w_A          268 DDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQ  347 (463)
T ss_dssp             CCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEETT
T ss_pred             cCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecCC
Confidence            1                    11111222222222                          6999999999998887655


Q ss_pred             --eEEcC---CCc--EEecCEEEEccCCCCC--chhhhccccccccCCCCcEEeCCCeeecC----CCCeEEecccCCC-
Q 017664          214 --LIETS---SGE--TIDTDCHFMCTGKAMA--SSWLRETILKDSLDGRGRLMVDENLRVRG----FKNVFAIGDITDI-  279 (368)
Q Consensus       214 --~v~~~---~g~--~i~~d~vi~a~G~~p~--~~~~~~~~l~~~~~~~g~i~vd~~~~~~~----~~~ifa~GD~~~~-  279 (368)
                        .+.+.   +|+  ++++|.||+|||++|+  .+++.....  ..   |++.||+++|+..    .|+||++|||... 
T Consensus       348 ~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~l~~l~~--~~---g~i~v~~~~~~~~~~~~~~~Ifa~G~~~~~~  422 (463)
T 3s5w_A          348 GIELALRDAGSGELSVETYDAVILATGYERQLHRQLLEPLAE--YL---GDHEIGRDYRLQTDERCKVAIYAQGFSQASH  422 (463)
T ss_dssp             EEEEEEEETTTCCEEEEEESEEEECCCEECCC-CTTTGGGGG--GB---C--CCCTTSBCCBCTTBCSEEEESSCCHHHH
T ss_pred             EEEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccchhHHHHH--Hh---CCcccCcccccccCCCCCCeEEEcCCCcccC
Confidence              45554   665  4999999999999998  666655432  12   7899999999854    4569999999752 


Q ss_pred             --CccchHHHHHHHHHHHHHHHHHHHcC
Q 017664          280 --PEIKQGYLAQKHALVTAKNLKKLMMG  305 (368)
Q Consensus       280 --~~~~~~~~a~~~g~~aa~~i~~~l~g  305 (368)
                        ..+.....|++++++++..+.+...+
T Consensus       423 g~~~~~l~~~a~r~~~i~~~~~~~~~~~  450 (463)
T 3s5w_A          423 GLSDTLLSVLPVRAEEISGSLYQHLKPG  450 (463)
T ss_dssp             CTTTTSSTTHHHHHHHHHHHHHHHHC--
T ss_pred             CcCccchhHHHHHHHHHHHHHHhhcCCc
Confidence              23456778999999887766655333

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=99.97  E-value=5.7e-32  Score=256.37  Aligned_cols=277  Identities=14%  Similarity=0.088  Sum_probs=186.6

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc--------CCcEEEEcCCCceeeeccceeeeecccc--cccceeeccccc--CceeE
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS--------FADVVLIDEKEYFEITWASLRAVVEPSF--AVRSVINHGDYL--SNVKI   82 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~--------g~~v~lie~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~   82 (368)
                      +++||+||||||||+++|..|++        +.+|+|||+++.++..+.   ....+..  .........+++  .++++
T Consensus         2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~---~gv~p~~~~~~~~~~~~~~~~~~~~v~~   78 (456)
T 1lqt_A            2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR---SGVAPDHPKIKSISKQFEKTAEDPRFRF   78 (456)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH---HTSCTTCTGGGGGHHHHHHHHTSTTEEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccc---cccCCCCCCHHHHHHHHHHHHhcCCCEE
Confidence            46799999999999999998865        899999999977653321   1111111  011111111221  25666


Q ss_pred             EEeEEEEeeccEEEecCCeEEEecEEEEecCCC-CC---CCCchHHHHHHHHHHHH----------HH--hcCCeEEEEc
Q 017664           83 VVSTAVSITDTEVVTAGGQTFVYDYVVVATGHV-ES---VPKSRTERLSQYEKDFE----------KV--KSANSVLIVG  146 (368)
Q Consensus        83 ~~~~~~~~~~~~v~~~~g~~~~~d~lvlAtG~~-~~---~p~~~~~~~~~~~~~~~----------~~--~~~~~v~VvG  146 (368)
                      +...  .++ +.+.+.++ .+.||+||+|||+. |.   +|+.+...+.+......          ..  ..+++++|||
T Consensus        79 ~~~v--~v~-~~v~~~~~-~~~~d~lViAtG~~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIG  154 (456)
T 1lqt_A           79 FGNV--VVG-EHVQPGEL-SERYDAVIYAVGAQSDRMLNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIG  154 (456)
T ss_dssp             EESC--CBT-TTBCHHHH-HHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEEC
T ss_pred             EeeE--EEC-CEEEECCC-eEeCCEEEEeeCCCCCCCCCCCCCCCCCcEEHHHHHhhhhcCcccccchhhcCCCEEEEEC
Confidence            5442  232 33444444 47899999999997 44   44433222222222211          11  1478999999


Q ss_pred             CchhHHHHHHHHhhh-------------------CCCCeEEEEecCcccccccC-------------------chh----
Q 017664          147 GGPTGVELAGEIAVD-------------------FPDKKVILVHRGPKLLEFVG-------------------SRA----  184 (368)
Q Consensus       147 ~g~~~~e~a~~l~~~-------------------~~~~~v~~i~~~~~~l~~~~-------------------~~~----  184 (368)
                      +|++|+|+|..|.+.                   ....+|+++.|+..+...+.                   +++    
T Consensus       155 ~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~elrel~~lp~~~~~~~~~~~~~~~  234 (456)
T 1lqt_A          155 NGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGIT  234 (456)
T ss_dssp             CSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGGGCTTEEEECCGGGGTTCC
T ss_pred             CCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHHHHhhcCCCceeeeChHHhccch
Confidence            999999999998852                   12359999999876533221                   111    


Q ss_pred             --------------HHHHHHHHHc------CCcEEEecceeeecccCCC--eEEcC----------------CC--cEEe
Q 017664          185 --------------SQIALDWLTS------KKVEVILNQSVTLNTISDG--LIETS----------------SG--ETID  224 (368)
Q Consensus       185 --------------~~~~~~~l~~------~gv~i~~~~~v~~i~~~~~--~v~~~----------------~g--~~i~  224 (368)
                                    .+.+.+.+++      +||++++++.+.++..++.  .+++.                +|  ++++
T Consensus       235 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~  314 (456)
T 1lqt_A          235 DEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGKRKVERIVLGRNELVSDGSGRVAAKDTGEREELP  314 (456)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEECSSSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEE
T ss_pred             hhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEecCCcEeEEEEEEEEecCCCcccccccCCCceEEEE
Confidence                          2344555556      7999999999998876533  34443                34  4699


Q ss_pred             cCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHc
Q 017664          225 TDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMM  304 (368)
Q Consensus       225 ~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~  304 (368)
                      +|.||+++|++|+. +   .++  .++++|++.+|+++|+++.|+|||+|||+..|.. ....|..+|+.+|.+|...+.
T Consensus       315 ~d~vi~a~G~~p~~-l---~gl--~~d~~g~i~vn~~~rvt~~pgvya~GD~~~gp~~-~i~~a~~~g~~~a~~i~~~l~  387 (456)
T 1lqt_A          315 AQLVVRSVGYRGVP-T---PGL--PFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTG-VIGTNKKDAQDTVDTLIKNLG  387 (456)
T ss_dssp             CSEEEECSCEECCC-C---TTS--CCBTTTTBCCEETTEETTCSSEEECTHHHHCSCS-CTTHHHHHHHHHHHHHHHHHH
T ss_pred             cCEEEEccccccCC-C---CCC--cccCCCCeeECCCCcCCCCCCEEEEeccCCCCch-hHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999987 2   233  5677899999999996689999999999865431 345799999999999999886


Q ss_pred             C
Q 017664          305 G  305 (368)
Q Consensus       305 g  305 (368)
                      +
T Consensus       388 ~  388 (456)
T 1lqt_A          388 N  388 (456)
T ss_dssp             H
T ss_pred             h
Confidence            5

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=99.97  E-value=1.5e-31  Score=276.09  Aligned_cols=272  Identities=16%  Similarity=0.193  Sum_probs=186.6

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc-CC-cEEEEcCCCceeeeccceeeeecccc--cccceeeccccc--CceeEEEeEEE
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS-FA-DVVLIDEKEYFEITWASLRAVVEPSF--AVRSVINHGDYL--SNVKIVVSTAV   88 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~-g~-~v~lie~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~   88 (368)
                      ..+||+||||||||++||.+|++ |+ +|+|||+++.+|+.+.   ..+ +.+  .........+++  .+++++.+..+
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~---~~i-p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v  261 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLST---SEI-PQFRLPYDVVNFEIELMKDLGVKIICGKSL  261 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHH---HTS-CTTTSCHHHHHHHHHHHHTTTCEEEESCCB
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCcccc---ccC-CcccCCHHHHHHHHHHHHHCCcEEEcccEe
Confidence            46799999999999999999984 88 7999999987764321   000 111  111111111111  25666665444


Q ss_pred             EeeccEEEecCCeEEEecEEEEecCCC-CCCCC----ch-HHHHHHHHHHHHH----------------HhcCCeEEEEc
Q 017664           89 SITDTEVVTAGGQTFVYDYVVVATGHV-ESVPK----SR-TERLSQYEKDFEK----------------VKSANSVLIVG  146 (368)
Q Consensus        89 ~~~~~~v~~~~g~~~~~d~lvlAtG~~-~~~p~----~~-~~~~~~~~~~~~~----------------~~~~~~v~VvG  146 (368)
                      .  .+.+.+.++..+.||+||||||+. |..++    .+ ...+.+...++..                ...+++|+|||
T Consensus       262 ~--~~~v~~~~~~~~~~d~vvlAtGa~~p~~l~~~~G~~~~~gv~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVIG  339 (1025)
T 1gte_A          262 S--ENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLG  339 (1025)
T ss_dssp             S--TTSBCHHHHHHTTCCEEEECCCCCEECCCGGGTTCCTTTTEEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEEC
T ss_pred             c--cceEEhhhcCccCCCEEEEecCCCCCCCCCCCCCCCCCCCEEEhHHHHHHHHhhcccccccccccccccCCcEEEEC
Confidence            2  123444444557899999999994 65432    22 1122222211111                11357999999


Q ss_pred             CchhHHHHHHHHhhhCCC-CeEEEEecCcc-cccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEc----
Q 017664          147 GGPTGVELAGEIAVDFPD-KKVILVHRGPK-LLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIET----  217 (368)
Q Consensus       147 ~g~~~~e~a~~l~~~~~~-~~v~~i~~~~~-~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~----  217 (368)
                      +|++|+|+|..+.+  .+ .+|+++++.++ .++..+++     .+.+++.||++++++.+.++..+++   .+++    
T Consensus       340 gG~~g~e~A~~~~~--~G~~~Vtvv~r~~~~~~~~~~~e-----~~~~~~~Gv~~~~~~~~~~i~~~~g~v~~v~~~~~~  412 (1025)
T 1gte_A          340 AGDTAFDCATSALR--CGARRVFLVFRKGFVNIRAVPEE-----VELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTE  412 (1025)
T ss_dssp             SSHHHHHHHHHHHH--TTCSEEEEECSSCGGGCCSCHHH-----HHHHHHTTCEEECSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CChHHHHHHHHHHH--cCCCEEEEEEecChhhCCCCHHH-----HHHHHHcCCEEEeCCCceEEEccCCeEEEEEEEEeE
Confidence            99999999999885  35 48999999873 44443332     2567788999999999888865444   2332    


Q ss_pred             --CCC---------cEEecCEEEEccCCCCC-chhhhc-cccccccCCCCcEEeCC-CeeecCCCCeEEecccCCCCccc
Q 017664          218 --SSG---------ETIDTDCHFMCTGKAMA-SSWLRE-TILKDSLDGRGRLMVDE-NLRVRGFKNVFAIGDITDIPEIK  283 (368)
Q Consensus       218 --~~g---------~~i~~d~vi~a~G~~p~-~~~~~~-~~l~~~~~~~g~i~vd~-~~~~~~~~~ifa~GD~~~~~~~~  283 (368)
                        ++|         +++++|.||+|+|++|+ ..++.. .++  .++++|+|.||+ ++|| +.|+|||+|||+..+.  
T Consensus       413 ~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl--~~~~~G~I~vd~~~~~T-s~~~VfA~GD~~~~~~--  487 (1025)
T 1gte_A          413 QDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPI--KFNRWDLPEVDPETMQT-SEPWVFAGGDIVGMAN--  487 (1025)
T ss_dssp             ECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHTTTS--CBCTTSSBCCCTTTCBC-SSTTEEECSGGGCSCC--
T ss_pred             EcCCCCcccCCCceEEEECCEEEECCCCCCCchhhhhcccCc--eECCCCCEEECCCCCcc-CCCCEEEeCCCCCCch--
Confidence              122         37899999999999764 555554 244  678889999997 8998 8999999999997644  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHc
Q 017664          284 QGYLAQKHALVTAKNLKKLMM  304 (368)
Q Consensus       284 ~~~~a~~~g~~aa~~i~~~l~  304 (368)
                      +...|+.||+.||++|.++|.
T Consensus       488 ~~~~A~~~G~~aA~~i~~~L~  508 (1025)
T 1gte_A          488 TTVESVNDGKQASWYIHKYIQ  508 (1025)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            789999999999999998875

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=99.97  E-value=3.5e-31  Score=251.25  Aligned_cols=278  Identities=16%  Similarity=0.127  Sum_probs=182.9

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc-C--CcEEEEcCCCceeeeccceeeeeccccc--ccceeeccccc--CceeEEEeEE
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS-F--ADVVLIDEKEYFEITWASLRAVVEPSFA--VRSVINHGDYL--SNVKIVVSTA   87 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~-g--~~v~lie~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~   87 (368)
                      .++||+||||||||+++|..|++ +  .+|+|||+++..+..+.   ....+.+.  ........+++  .+++++....
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~---~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~   81 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVR---FGVAPDHPEVKNVINTFTQTARSDRCAFYGNVE   81 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHH---HTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCC
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceee---cccCCCCccHHHHHHHHHHHHHhCCcEEEeeeE
Confidence            45799999999999999999974 6  99999999987653321   11111111  11111111222  1455544322


Q ss_pred             EEeeccEEEecCCeEEEecEEEEecCCCC-C---CCCchHHHHHHHHHHHHH------------HhcCCeEEEEcCchhH
Q 017664           88 VSITDTEVVTAGGQTFVYDYVVVATGHVE-S---VPKSRTERLSQYEKDFEK------------VKSANSVLIVGGGPTG  151 (368)
Q Consensus        88 ~~~~~~~v~~~~g~~~~~d~lvlAtG~~~-~---~p~~~~~~~~~~~~~~~~------------~~~~~~v~VvG~g~~~  151 (368)
                      +  . +.+.+.+ ..+.||+||+|||+.| .   +|+.+...+.++..+...            ...+++++|||+|++|
T Consensus        82 v--~-~~V~~~~-~~~~~d~lVlAtGs~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~~g  157 (460)
T 1cjc_A           82 V--G-RDVTVQE-LQDAYHAVVLSYGAEDHQALDIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVA  157 (460)
T ss_dssp             B--T-TTBCHHH-HHHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHH
T ss_pred             E--e-eEEEecc-ceEEcCEEEEecCcCCCCCCCCCCCCCCcEEEHHHHHHHhhcCccccccccCCCCCEEEEECCCHHH
Confidence            1  1 2333333 2468999999999983 4   444332222222222111            1147899999999999


Q ss_pred             HHHHHHHhh-------------------hCCCCeEEEEecCccc--------------ccccC-----c-----------
Q 017664          152 VELAGEIAV-------------------DFPDKKVILVHRGPKL--------------LEFVG-----S-----------  182 (368)
Q Consensus       152 ~e~a~~l~~-------------------~~~~~~v~~i~~~~~~--------------l~~~~-----~-----------  182 (368)
                      +|+|..|.+                   +....+|+++.|++..              ++..+     .           
T Consensus       158 ~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~~~~~~~~~~~~~~~~~~  237 (460)
T 1cjc_A          158 LDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKE  237 (460)
T ss_dssp             HHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTT
T ss_pred             HHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCCCceeEechhhhcchhhhhhh
Confidence            999999883                   2223479999988754              22110     0           


Q ss_pred             --h----hHHHHHHHHHc--------------CCcEEEecceeeecccC--C-C--eEEcC---------------CC--
Q 017664          183 --R----ASQIALDWLTS--------------KKVEVILNQSVTLNTIS--D-G--LIETS---------------SG--  220 (368)
Q Consensus       183 --~----~~~~~~~~l~~--------------~gv~i~~~~~v~~i~~~--~-~--~v~~~---------------~g--  220 (368)
                        .    +.+.+.+.+++              +||++++++.+.++..+  + .  .+++.               +|  
T Consensus       238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~g~~  317 (460)
T 1cjc_A          238 AARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDV  317 (460)
T ss_dssp             SCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEE
T ss_pred             ccHHHHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEEcCCCCceEEEEEEEEEEEccccCCCcccCCCce
Confidence              1    22334455555              89999999999888765  3 2  23332               34  


Q ss_pred             cEEecCEEEEccCCCCCchhhhcccccc-ccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHH
Q 017664          221 ETIDTDCHFMCTGKAMASSWLRETILKD-SLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNL  299 (368)
Q Consensus       221 ~~i~~d~vi~a~G~~p~~~~~~~~~l~~-~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i  299 (368)
                      +++++|.||+++|++|+. +   .  ++ +++++|++.+|+++|+.+.|+|||+|||+..|. .....|+.+|+.+|.+|
T Consensus       318 ~~i~~d~Vi~a~G~~p~~-l---~--gl~~~d~~g~i~vn~~~rt~~~p~vya~Gd~~~g~~-~~i~~a~~~g~~aa~~i  390 (460)
T 1cjc_A          318 EDLPCGLVLSSIGYKSRP-I---D--PSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGPT-GVITTTMTDSFLTGQIL  390 (460)
T ss_dssp             EEEECSEEEECCCEECCC-C---C--TTSCCBTTTTBCCEETTEETTCTTEEECTHHHHCTT-CCHHHHHHHHHHHHHHH
T ss_pred             EEEEcCEEEECCCCCCCC-C---C--CCcccccCCCeeECCCCcCcCCCCEEEEEeCCcCCC-ccHHHHHHHHHHHHHHH
Confidence            589999999999999986 3   2  33 467788999999999943799999999996543 13568999999999999


Q ss_pred             HHHHcCC
Q 017664          300 KKLMMGR  306 (368)
Q Consensus       300 ~~~l~g~  306 (368)
                      ...+.+.
T Consensus       391 ~~~l~~~  397 (460)
T 1cjc_A          391 LQDLKAG  397 (460)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhC
Confidence            9988654

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.97  E-value=9.1e-32  Score=267.96  Aligned_cols=270  Identities=16%  Similarity=0.113  Sum_probs=188.4

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccc---cCceeEEEeEE
Q 017664           12 GLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDY---LSNVKIVVSTA   87 (368)
Q Consensus        12 ~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~   87 (368)
                      +..+++||+|||||+|||+||+.|+ +|++|+|||+++.+++.+......................   +.++++.... 
T Consensus       387 ~~~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~gv~~~~~~-  465 (690)
T 3k30_A          387 AKESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAVLAELPNVEIYRES-  465 (690)
T ss_dssp             CCSSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHHHHTSTTCGGGGHHHHHHHHHHHTCTTEEEESSC-
T ss_pred             cccccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeeeccCCCchhHHHHHHHHHHHHHHHcCCCEEEECC-
Confidence            3445789999999999999999998 4999999999988775533211111100000101111111   1134433321 


Q ss_pred             EEeeccEEEecCCeEEEecEEEEecCCCC--------CCC---CchHHHHHHHHHHHH-HHhcCCeEEEEc--CchhHHH
Q 017664           88 VSITDTEVVTAGGQTFVYDYVVVATGHVE--------SVP---KSRTERLSQYEKDFE-KVKSANSVLIVG--GGPTGVE  153 (368)
Q Consensus        88 ~~~~~~~v~~~~g~~~~~d~lvlAtG~~~--------~~p---~~~~~~~~~~~~~~~-~~~~~~~v~VvG--~g~~~~e  153 (368)
                            .+...++..+.||+||+|||+.|        ..|   +.+...+.+...... ....+++++|||  +|.+|+|
T Consensus       466 ------~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~~~~~v~~~~~~l~~~~~~g~~VvViG~ggG~~g~e  539 (690)
T 3k30_A          466 ------PMTGDDIVEFGFEHVITATGATWRTDGVARFHTTALPIAEGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGV  539 (690)
T ss_dssp             ------CCCHHHHHHTTCCEEEECCCEEECSSCCSSSCSSCCCBCTTSEEECHHHHHTTCCCSSSEEEEEECSCSSHHHH
T ss_pred             ------eecHHHHhhcCCCEEEEcCCCccccccccccCCCCCCCCCCCcEEcHHHHhCCCCCCCCEEEEEcCCCCccHHH
Confidence                  22233445678999999999983        233   333222222222222 234578899999  9999999


Q ss_pred             HHHHHhhhCCCCeEEEEecCcccccccC-chhHHHHHHHHHcCCcEEEecceeeecccCCCeEE---cCCCcEEecCEEE
Q 017664          154 LAGEIAVDFPDKKVILVHRGPKLLEFVG-SRASQIALDWLTSKKVEVILNQSVTLNTISDGLIE---TSSGETIDTDCHF  229 (368)
Q Consensus       154 ~a~~l~~~~~~~~v~~i~~~~~~l~~~~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~---~~~g~~i~~d~vi  229 (368)
                      +|..|.+  .+.+|+++++.+.+++... +.....+.+.+++.||++++++.|++++.++..+.   +.+++++++|.||
T Consensus       540 ~A~~L~~--~g~~Vtlv~~~~~l~~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~~~~~~~~~~i~aD~VV  617 (690)
T 3k30_A          540 VAELLAQ--KGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGAGGVTVRDTYASIERELECDAVV  617 (690)
T ss_dssp             HHHHHHH--TTCEEEEEESSSSTTGGGGGGTCHHHHHHHHHHTTCEEEESEEEEEEETTEEEEEETTTCCEEEEECSEEE
T ss_pred             HHHHHHh--CCCeeEEEecccccccccccchhHHHHHHHHHHCCCEEEcCcEEEEEECCeEEEEEccCCeEEEEECCEEE
Confidence            9999986  4889999999988776543 56678889999999999999999998876543443   3356689999999


Q ss_pred             EccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCCC
Q 017664          230 MCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRN  307 (368)
Q Consensus       230 ~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~  307 (368)
                      +|+|++|+.+++.....      .+.       ++ +.|+||++|||++.+   ....|.+||+.||.||.+.|.+++
T Consensus       618 ~A~G~~p~~~l~~~l~~------~~~-------~t-~~~~VyaiGD~~~~~---~~~~A~~~g~~aa~~i~~~l~g~~  678 (690)
T 3k30_A          618 MVTARLPREELYLDLVA------RRD-------AG-EIASVRGIGDAWAPG---TIAAAVWSGRRAAEEFDAVLPSND  678 (690)
T ss_dssp             EESCEEECCHHHHHHHH------HHH-------HT-SCSEEEECGGGTSCB---CHHHHHHHHHHHHHHTTCCCCCTT
T ss_pred             ECCCCCCChHHHHHHhh------hhc-------cc-CCCCEEEEeCCCchh---hHHHHHHHHHHHHHHHHhhccCCC
Confidence            99999999887765332      111       44 799999999999754   456799999999999998877764

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.96  E-value=1.6e-29  Score=240.65  Aligned_cols=260  Identities=14%  Similarity=0.150  Sum_probs=176.0

Q ss_pred             CcEEEECCChHHHHHHHHhh----cCCc---EEEEcCCCceeeeccceee------------e----ec----------c
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ----SFAD---VVLIDEKEYFEITWASLRA------------V----VE----------P   63 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~----~g~~---v~lie~~~~~~~~~~~~~~------------~----~~----------~   63 (368)
                      +||+||||||||+++|..|+    .|.+   |+|||+++.+|+.|.....            .    ..          .
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~   82 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA   82 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence            69999999999999999885    4889   9999999887765532100            0    00          0


Q ss_pred             ccc--c------cceeecc-------cccC--cee--EE-EeEEEEee--cc----EEEecC---C--eEEEecEEEEec
Q 017664           64 SFA--V------RSVINHG-------DYLS--NVK--IV-VSTAVSIT--DT----EVVTAG---G--QTFVYDYVVVAT  112 (368)
Q Consensus        64 ~~~--~------~~~~~~~-------~~~~--~~~--~~-~~~~~~~~--~~----~v~~~~---g--~~~~~d~lvlAt  112 (368)
                      .+.  .      ..+....       ++..  +++  +. +..+..++  ..    .|.+.+   +  .++.||+||+||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAt  162 (464)
T 2xve_A           83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT  162 (464)
T ss_dssp             TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECC
T ss_pred             CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECC
Confidence            000  0      0000000       0000  232  32 34555554  22    555544   4  578999999999


Q ss_pred             C--CCCCCCCchHHH------HHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchh
Q 017664          113 G--HVESVPKSRTER------LSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRA  184 (368)
Q Consensus       113 G--~~~~~p~~~~~~------~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~  184 (368)
                      |  +.|.+|.+++..      ++...........+++|+|||+|++|+|+|..|.+  .+.+|+++++++.+++...   
T Consensus       163 G~~s~p~~p~ipG~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eiA~~l~~--~g~~V~li~~~~~~~~~~~---  237 (464)
T 2xve_A          163 GHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYK--YGAKKLISCYRTAPMGYKW---  237 (464)
T ss_dssp             CSSSSBCCCCCBTTTTCCSEEEEGGGCCCGGGGTTSEEEEECCSTTHHHHHHHHHH--TTCSEEEEECSSCCCCCCC---
T ss_pred             CCCCCCccCCCCCcccCCceEEehhhhCCHhHcCCCEEEEEcCCCCHHHHHHHHHH--hCCeEEEEEECCCCCCCCC---
Confidence            9  667666543211      11111111122358999999999999999999996  4889999999887654321   


Q ss_pred             HHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCC---C
Q 017664          185 SQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDE---N  261 (368)
Q Consensus       185 ~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~---~  261 (368)
                               ..||+++  ..|.+++  ++.+.+.||+++++|.||+|||++|+.+++... +++..+.++++ ++.   .
T Consensus       238 ---------~~~V~~~--~~V~~i~--~~~V~~~dG~~i~~D~Vi~atG~~p~~~~l~~~-~gl~~~~~~~v-~~~~~~~  302 (464)
T 2xve_A          238 ---------PENWDER--PNLVRVD--TENAYFADGSSEKVDAIILCTGYIHHFPFLNDD-LRLVTNNRLWP-LNLYKGV  302 (464)
T ss_dssp             ---------CTTEEEC--SCEEEEC--SSEEEETTSCEEECSEEEECCCBCCCCTTBCTT-TCCCCCSSSCC-SSEETTT
T ss_pred             ---------CCceEEc--CCeEEEe--CCEEEECCCCEEeCCEEEECCCCCCCCCCcCcc-cccccCCCccc-ccccceE
Confidence                     2588887  6777765  337889999999999999999999999988752 23355555565 342   2


Q ss_pred             eeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHH
Q 017664          262 LRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLK  300 (368)
Q Consensus       262 ~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~  300 (368)
                      +++ +.|+||++|||+..+   ....|..||+.+|++|.
T Consensus       303 ~~t-~~p~i~aiGd~~~~~---~~~~a~~qa~~~a~~l~  337 (464)
T 2xve_A          303 VWE-DNPKFFYIGMQDQWY---SFNMFDAQAWYARDVIM  337 (464)
T ss_dssp             EES-SSTTEEECSCSCCSS---CHHHHHHHHHHHHHHHT
T ss_pred             ecC-CCCCEEEEeCccccc---chHHHHHHHHHHHHHHc
Confidence            555 799999999998643   56889999999999997

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.96  E-value=3.5e-31  Score=264.77  Aligned_cols=272  Identities=18%  Similarity=0.141  Sum_probs=181.9

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccC-ceeEE---EeEE
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLS-NVKIV---VSTA   87 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~   87 (368)
                      ..+++||+|||||||||+||..|+ +|++|+|||+++.+++.+......  +.+.  .+....+++. .++..   ...+
T Consensus       386 ~~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~~~~~--pg~~--~~~~~~~~~~~~i~~~~~~~~~~  461 (729)
T 1o94_A          386 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAAL--PGLG--EWSYHRDYRETQITKLLKKNKES  461 (729)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTS--TTCG--GGHHHHHHHHHHHHHHHHHSTTC
T ss_pred             ccCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeeecccC--CChH--HHHHHHHHHHHHHHHhhcccCCc
Confidence            345689999999999999999998 599999999998876443221100  0000  0000000000 00000   0001


Q ss_pred             EEee-ccEEEecCCeEEEecEEEEecCCC--------CCCC---Cch--HHHHHHHHHHHH-HHhcCCeEEEEc--Cchh
Q 017664           88 VSIT-DTEVVTAGGQTFVYDYVVVATGHV--------ESVP---KSR--TERLSQYEKDFE-KVKSANSVLIVG--GGPT  150 (368)
Q Consensus        88 ~~~~-~~~v~~~~g~~~~~d~lvlAtG~~--------~~~p---~~~--~~~~~~~~~~~~-~~~~~~~v~VvG--~g~~  150 (368)
                      +.+. ...+.+.++..+.||+||+|||+.        |..|   +.+  ...+.+...... ....+++|+|||  +|++
T Consensus       462 v~i~~~~~v~~~~~~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~~~~l~~~~~~gk~VvVIG~GgG~~  541 (729)
T 1o94_A          462 QLALGQKPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFM  541 (729)
T ss_dssp             EEECSCCCCCHHHHHTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECHHHHHHCCSCCCSEEEEEECCCSSH
T ss_pred             eEEEeCeEEehhhccccCCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEEHHHHhcCCCCCCCeEEEEcCCCCch
Confidence            1222 123444445568899999999997        3333   332  222323333222 223478999999  9999


Q ss_pred             HHHHHHHHhhhCCCCeEEEEecCcccccc--cCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEE--cCCC-cE---
Q 017664          151 GVELAGEIAVDFPDKKVILVHRGPKLLEF--VGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIE--TSSG-ET---  222 (368)
Q Consensus       151 ~~e~a~~l~~~~~~~~v~~i~~~~~~l~~--~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~--~~~g-~~---  222 (368)
                      |+|+|..|.+  .+.+|+++++.+ +++.  ++.. ...+.+.++++||++++++.+.++..++..+.  ..++ ++   
T Consensus       542 g~e~A~~l~~--~G~~Vtlv~~~~-l~~~~~~~~~-~~~~~~~l~~~GV~i~~~~~v~~i~~~~v~~~~~~~~~~~~~~~  617 (729)
T 1o94_A          542 APSLAEKLAT--AGHEVTIVSGVH-LANYMHFTLE-YPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYR  617 (729)
T ss_dssp             HHHHHHHHHH--TTCEEEEEESSC-TTHHHHHTTC-HHHHHHHHHHTTCEEECSEEEEEEETTEEEEEETTCSCSCCCCC
T ss_pred             HHHHHHHHHH--cCCEEEEEeccc-cccccccccc-HHHHHHHHHhCCCEEEcCcEEEEEECCeEEEEEecCCceEEecc
Confidence            9999999986  478999999988 6542  3333 56778889999999999999998875422332  1232 22   


Q ss_pred             ---------------EecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHH
Q 017664          223 ---------------IDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYL  287 (368)
Q Consensus       223 ---------------i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~  287 (368)
                                     +++|.||+|+|++|+.+++.....          .+|+++|| +.|+|||+|||+..   .++..
T Consensus       618 ~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~~~l~~----------~vd~~~~t-~~~~VyAiGD~~~~---~~~~~  683 (729)
T 1o94_A          618 GPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWNELKA----------RESEWAEN-DIKGIYLIGDAEAP---RLIAD  683 (729)
T ss_dssp             CTTSCSSCCCCCCEEEECSEEEEESCEEECCHHHHHHHH----------TGGGTGGG-TCCEEEECGGGTSC---CCHHH
T ss_pred             cccccccccCCcceeeeCCEEEECCCCCCChHHHHHHhh----------hccccccc-CCCCeEEEeCccch---hhHHH
Confidence                           999999999999999887754321          26788887 89999999999963   35778


Q ss_pred             HHHHHHHHHHHHHHHHcCC
Q 017664          288 AQKHALVTAKNLKKLMMGR  306 (368)
Q Consensus       288 a~~~g~~aa~~i~~~l~g~  306 (368)
                      |++||+.||.+|.+.+.+.
T Consensus       684 A~~~G~~aA~~i~~~l~~~  702 (729)
T 1o94_A          684 ATFTGHRVAREIEEANPQI  702 (729)
T ss_dssp             HHHHHHHHHHTTTSSCTTS
T ss_pred             HHHHHHHHHHHhhhhcccC
Confidence            9999999999998766543

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=99.96  E-value=9.3e-30  Score=261.05  Aligned_cols=269  Identities=16%  Similarity=0.105  Sum_probs=184.9

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccce-eeeecccccccceeecc-c--ccCceeEEEe-EEE
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASL-RAVVEPSFAVRSVINHG-D--YLSNVKIVVS-TAV   88 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~-~~~   88 (368)
                      ..+||+||||||||++||.+|+ .|++|+|||+++.+++.+... ...+......+...... +  -+.+++++.. .+.
T Consensus       127 ~~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~V~  206 (965)
T 2gag_A          127 VHTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTTVF  206 (965)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEEEE
T ss_pred             cCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCEEE
Confidence            3579999999999999999997 599999999998877544311 01111100000000000 0  0124555433 344


Q ss_pred             Eeecc-E------------EEe------cCCeEEEecEEEEecCCCCCCCCc---hHHHHHH---HHHHHHH--HhcCCe
Q 017664           89 SITDT-E------------VVT------AGGQTFVYDYVVVATGHVESVPKS---RTERLSQ---YEKDFEK--VKSANS  141 (368)
Q Consensus        89 ~~~~~-~------------v~~------~~g~~~~~d~lvlAtG~~~~~p~~---~~~~~~~---~~~~~~~--~~~~~~  141 (368)
                      .++.. .            +.+      .++..+.||+||||||+.|..|++   +.+.+..   +......  ...+++
T Consensus       207 ~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~~~ipG~~~~gv~~~~~~~~~l~~~~~~~gk~  286 (965)
T 2gag_A          207 GSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERPIVFENNDRPGIMLAGAVRSYLNRYGVRAGAR  286 (965)
T ss_dssp             EEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECCCCCBTCCSTTEEEHHHHHHHHHTTCEESCSS
T ss_pred             eeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCCCCCCCCCCCCEEEhHHHHHHHHhcCCCCCCe
Confidence            44322 1            111      122468999999999998655443   2222222   2222221  123589


Q ss_pred             EEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeeccc--CCC--eEEc
Q 017664          142 VLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTI--SDG--LIET  217 (368)
Q Consensus       142 v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~--~~~--~v~~  217 (368)
                      ++|||+|++|+|+|..|.+  .+.+|+++++.+.+++.         .+.+++.||++++++.+.+++.  ++.  .+++
T Consensus       287 vvViGgG~~g~E~A~~L~~--~G~~Vtvv~~~~~~~~~---------~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~~  355 (965)
T 2gag_A          287 IAVATTNDSAYELVRELAA--TGGVVAVIDARSSISAA---------AAQAVADGVQVISGSVVVDTEADENGELSAIVV  355 (965)
T ss_dssp             EEEEESSTTHHHHHHHHGG--GTCCSEEEESCSSCCHH---------HHHHHHTTCCEEETEEEEEEEECTTSCEEEEEE
T ss_pred             EEEEcCCHHHHHHHHHHHH--cCCcEEEEECCCccchh---------HHHHHhCCeEEEeCCEeEEEeccCCCCEEEEEE
Confidence            9999999999999999985  37779999998876421         5678899999999999999886  333  4554


Q ss_pred             CC-------C--cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeee----cCCCCeEEecccCCCCccch
Q 017664          218 SS-------G--ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRV----RGFKNVFAIGDITDIPEIKQ  284 (368)
Q Consensus       218 ~~-------g--~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~----~~~~~ifa~GD~~~~~~~~~  284 (368)
                      .+       |  +++++|.|++++|++|+.+++...        ++++.+|++++.    ++.|+|||+|||++.+.  .
T Consensus       356 ~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~~--------~g~i~vd~~~~~~v~~ts~p~IyAaGD~a~~~~--l  425 (965)
T 2gag_A          356 AELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQR--------QGKLDWDTTIHAFVPADAVANQHLAGAMTGRLD--T  425 (965)
T ss_dssp             EEECTTCCEEEEEEEECSEEEEECCEEECCHHHHHT--------TCCEEEETTTTEEEECSCCTTEEECGGGGTCCS--H
T ss_pred             EeccccCCCCceEEEEcCEEEECCCcCcChHHHHhC--------CCcEEEcCcccccccCCCCCCEEEEEecCCchh--H
Confidence            43       5  689999999999999998876533        467888887762    48999999999998754  3


Q ss_pred             HHHHHHHHHHHHHHHHHHHcC
Q 017664          285 GYLAQKHALVTAKNLKKLMMG  305 (368)
Q Consensus       285 ~~~a~~~g~~aa~~i~~~l~g  305 (368)
                       ..|..||+.||.+|...+..
T Consensus       426 -~~A~~~G~~aA~~i~~~lg~  445 (965)
T 2gag_A          426 -ASALSTGAATGAAAATAAGF  445 (965)
T ss_dssp             -HHHHHHHHHHHHHHHHHTTC
T ss_pred             -HHHHHHHHHHHHHHHHHcCC
Confidence             48999999999999988753

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.96  E-value=2e-29  Score=239.41  Aligned_cols=263  Identities=17%  Similarity=0.211  Sum_probs=174.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhc-CC--cEEEEcCCCceeeeccceeee---------------------------ecc
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQS-FA--DVVLIDEKEYFEITWASLRAV---------------------------VEP   63 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~-g~--~v~lie~~~~~~~~~~~~~~~---------------------------~~~   63 (368)
                      ++.+||+||||||+|+++|..|++ |.  +|+|||+++.++..|......                           ...
T Consensus         4 ~~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~   83 (447)
T 2gv8_A            4 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSP   83 (447)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCC
T ss_pred             CCCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCc
Confidence            456899999999999999999985 88  999999998766544221100                           000


Q ss_pred             ccc-------cc--------------------ceee-cccccC--ceeE-EEeEEEEeec--c--EEEecC---Ce---E
Q 017664           64 SFA-------VR--------------------SVIN-HGDYLS--NVKI-VVSTAVSITD--T--EVVTAG---GQ---T  102 (368)
Q Consensus        64 ~~~-------~~--------------------~~~~-~~~~~~--~~~~-~~~~~~~~~~--~--~v~~~~---g~---~  102 (368)
                      .+.       ..                    .+.. ..++..  +..+ .+.++..++.  .  .|.+.+   |.   .
T Consensus        84 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~~  163 (447)
T 2gv8_A           84 LYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISK  163 (447)
T ss_dssp             CCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEE
T ss_pred             hhhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeEE
Confidence            000       00                    0000 000000  1122 2345555543  2  455544   55   7


Q ss_pred             EEecEEEEecCC--CCCCCCchHHH-H--------HHHHHHH-HHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCe-EEE
Q 017664          103 FVYDYVVVATGH--VESVPKSRTER-L--------SQYEKDF-EKVKSANSVLIVGGGPTGVELAGEIAVDFPDKK-VIL  169 (368)
Q Consensus       103 ~~~d~lvlAtG~--~~~~p~~~~~~-~--------~~~~~~~-~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~-v~~  169 (368)
                      +.||+||+|||.  .|.+|.+++.. .        .+..... .....+++|+|||+|++|+|+|..|.+  .+.+ |++
T Consensus       164 ~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~~~~~~~~k~VvVvG~G~sg~e~A~~l~~--~~~~~V~l  241 (447)
T 2gv8_A          164 DIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTP--VAKHPIYQ  241 (447)
T ss_dssp             EEESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHTT--TSCSSEEE
T ss_pred             EEeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEecccCChhhcCCCEEEEEccCcCHHHHHHHHHH--HhCCcEEE
Confidence            999999999999  57666654321 1        1111111 112358999999999999999999985  4677 999


Q ss_pred             EecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCCcE-EecCEEEEccCCCCCchh-----hhc
Q 017664          170 VHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGET-IDTDCHFMCTGKAMASSW-----LRE  243 (368)
Q Consensus       170 i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~-i~~d~vi~a~G~~p~~~~-----~~~  243 (368)
                      +++++.+               +++.||.+  ...|+++..+++.|.+.||++ +++|.||+|||++|+.++     +..
T Consensus       242 ~~r~~~~---------------l~~~~i~~--~~~v~~~~~~~~~v~~~dG~~~~~~D~vi~atG~~~~~~~l~~~~l~~  304 (447)
T 2gv8_A          242 SLLGGGD---------------IQNESLQQ--VPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKS  304 (447)
T ss_dssp             ECTTCCS---------------CBCSSEEE--ECCEEEEETTTTEEEETTTEEECCCSEEEECCCBCCCCCCHHHHSCCS
T ss_pred             EeCCCCc---------------CCCCCeEE--ecCeEEEecCCCEEEECCCCEeccCCEEEECCCCCcCCCCCccccccc
Confidence            9988754               44567774  567787765555889999976 789999999999999988     554


Q ss_pred             cccccccCCCCcEEeCCCeee--cCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHH
Q 017664          244 TILKDSLDGRGRLMVDENLRV--RGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLK  300 (368)
Q Consensus       244 ~~l~~~~~~~g~i~vd~~~~~--~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~  300 (368)
                      ....+  ..++.+.++.+.++  ++.|++|++||+....   ....|..||+.+|++|.
T Consensus       305 ~~~~i--~~~~~~~~~~~~~v~~~~~p~l~~~G~~~~~~---~~~~a~~qa~~~a~~~~  358 (447)
T 2gv8_A          305 PETKL--IDDGSHVHNVYQHIFYIPDPTLAFVGLALHVV---PFPTSQAQAAFLARVWS  358 (447)
T ss_dssp             TTTCC--CSSSSSCCSEETTTEETTCTTEEESSCCBSSC---HHHHHHHHHHHHHHHHT
T ss_pred             ccCce--ecCCCcccccccccccCCCCcEEEEecccccc---CchHHHHHHHHHHHHHc
Confidence            32222  22444555544331  4799999999998653   57889999999999997

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.96  E-value=2.3e-29  Score=241.39  Aligned_cols=247  Identities=17%  Similarity=0.131  Sum_probs=175.6

Q ss_pred             CCcEEEECCChHHHHHHHHhhcCCcEEEEcCCCceeeeccceeeee-c-ccccccceeecc-cccCceeEE-EeEEEEee
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYFEITWASLRAVV-E-PSFAVRSVINHG-DYLSNVKIV-VSTAVSIT   91 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~g~~v~lie~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~   91 (368)
                      ++||+|||||++|+++|.+|++.++|+|||+++.+++.+....... . +....+...... ++..++++. ...+..++
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~v~~~~~~~v~~i~  187 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQYLTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKLNENTKIYLETSALGVF  187 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTTCCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTCCTTEEEETTEEECCCE
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHHhcCCEEEcCCEEEEEE
Confidence            4699999999999999999973399999999998876543321111 0 000001111111 112245543 33455554


Q ss_pred             cc--E--EEe-cCCe--EEEecEEEEecCCCCCCCCch---HHHHH---HHHHHHHH--HhcCCeEEEEcCchhHHHHHH
Q 017664           92 DT--E--VVT-AGGQ--TFVYDYVVVATGHVESVPKSR---TERLS---QYEKDFEK--VKSANSVLIVGGGPTGVELAG  156 (368)
Q Consensus        92 ~~--~--v~~-~~g~--~~~~d~lvlAtG~~~~~p~~~---~~~~~---~~~~~~~~--~~~~~~v~VvG~g~~~~e~a~  156 (368)
                      ..  .  +.. .+++  .+.||+||+|||+.|..|+++   ...+.   .+....+.  ...+++++|+|+|++++|   
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~vvViGgG~~gle---  264 (493)
T 1y56_A          188 DKGEYFLVPVVRGDKLIEILAKRVVLATGAIDSTMLFENNDMPGVFRRDFALEVMNVWEVAPGRKVAVTGSKADEVI---  264 (493)
T ss_dssp             ECSSSEEEEEEETTEEEEEEESCEEECCCEEECCCCCTTTTSTTEEEHHHHHHHHHTSCBCSCSEEEEESTTHHHHH---
T ss_pred             cCCcEEEEEEecCCeEEEEECCEEEECCCCCccCCCCCCCCCCCEEEcHHHHHHHHhcccCCCCEEEEECCCHHHHH---
Confidence            32  1  221 3453  689999999999986555433   22222   22222221  123589999999999987   


Q ss_pred             HHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCC
Q 017664          157 EIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGK  234 (368)
Q Consensus       157 ~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~  234 (368)
                                                       +.+++.||++++++.|.+++.++.  .+.+.+|+++++|.||+++|.
T Consensus       265 ---------------------------------~~l~~~GV~v~~~~~v~~i~~~~~v~~v~~~~g~~i~aD~Vv~a~G~  311 (493)
T 1y56_A          265 ---------------------------------QELERWGIDYVHIPNVKRVEGNEKVERVIDMNNHEYKVDALIFADGR  311 (493)
T ss_dssp             ---------------------------------HHHHHHTCEEEECSSEEEEECSSSCCEEEETTCCEEECSEEEECCCE
T ss_pred             ---------------------------------HHHHhCCcEEEeCCeeEEEecCCceEEEEeCCCeEEEeCEEEECCCc
Confidence                                             456778999999999999886654  577888999999999999999


Q ss_pred             CCCchhhhccccccccCCCCcEE-eCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHH
Q 017664          235 AMASSWLRETILKDSLDGRGRLM-VDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLM  303 (368)
Q Consensus       235 ~p~~~~~~~~~l~~~~~~~g~i~-vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l  303 (368)
                      +|+.+++...++.+.++++|++. ||+++|  +.|+||++|||++.+   ++..|..||+.||.||...+
T Consensus       312 ~p~~~l~~~~g~~~~~~~~g~i~~vd~~~~--s~~~vya~GD~~~~~---~~~~A~~~g~~aa~~i~~~l  376 (493)
T 1y56_A          312 RPDINPITQAGGKLRFRRGYYSPVLDEYHR--IKDGIYVAGSAVSIK---PHYANYLEGKLVGAYILKEF  376 (493)
T ss_dssp             EECCHHHHHTTCCEEEETTEEEECCCTTSE--EETTEEECSTTTCCC---CHHHHHHHHHHHHHHHHHHT
T ss_pred             CcCchHHHhcCCCccccCCceeeccccccC--cCCCEEEEeccCCcc---CHHHHHHHHHHHHHHHHHHc
Confidence            99999998887755556788887 899999  589999999999764   57889999999999999876

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.95  E-value=1.1e-27  Score=231.27  Aligned_cols=286  Identities=18%  Similarity=0.186  Sum_probs=182.2

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-c-CCcEEEEcCCCceeeeccce-----eeeec-----cccc---------ccceeec
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-S-FADVVLIDEKEYFEITWASL-----RAVVE-----PSFA---------VRSVINH   73 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~-g~~v~lie~~~~~~~~~~~~-----~~~~~-----~~~~---------~~~~~~~   73 (368)
                      .++||+|||||++|+++|..|+ + |.+|+|+|+++.+|+.|...     .....     ..+.         ...+...
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~   86 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQ   86 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCH
Confidence            4579999999999999999998 5 99999999998776544211     00000     0000         0000000


Q ss_pred             cc---c----c--Cce--eEE-EeEEEEee--cc----EEEecCCeEEEecEEEEecCC--CCCCCCchHHH------HH
Q 017664           74 GD---Y----L--SNV--KIV-VSTAVSIT--DT----EVVTAGGQTFVYDYVVVATGH--VESVPKSRTER------LS  127 (368)
Q Consensus        74 ~~---~----~--~~~--~~~-~~~~~~~~--~~----~v~~~~g~~~~~d~lvlAtG~--~~~~p~~~~~~------~~  127 (368)
                      .+   +    .  .++  .+. ..++..++  .+    .|.+.+|+.+.||+||+|||.  .|..|++++..      ++
T Consensus        87 ~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~~  166 (540)
T 3gwf_A           87 PEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFEGETIH  166 (540)
T ss_dssp             HHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCCCCTTGGGCCSEEEE
T ss_pred             HHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCCCCCCccccCCCEEE
Confidence            00   0    0  022  222 23444443  33    678888888999999999994  56665543211      22


Q ss_pred             HHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc-cccccCchhHHHHHHHH--------------
Q 017664          128 QYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK-LLEFVGSRASQIALDWL--------------  192 (368)
Q Consensus       128 ~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~-~l~~~~~~~~~~~~~~l--------------  192 (368)
                      ...........+++|+|||+|.+|+|+|..|.+  .+.+|++++|.+. ++|..++++...+++.+              
T Consensus       167 ~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~--~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~  244 (540)
T 3gwf_A          167 TAAWPEGKSLAGRRVGVIGTGSTGQQVITSLAP--EVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYDRIWERAKNS  244 (540)
T ss_dssp             GGGCCSSCCCTTSEEEEECCSHHHHHHHHHHTT--TCSEEEEEESSCCCEEECCCCBCCHHHHHHHHHTHHHHHHHHHTS
T ss_pred             eecCCCccccccceEEEECCCchHHHHHHHHHh--hCCEEEEEECCCCccccCccCCCCHHHHHHHHhccHHHHHHHHhc
Confidence            222111222457999999999999999999985  4889999999987 44443333222221111              


Q ss_pred             --------------------------------------------------------------------------------
Q 017664          193 --------------------------------------------------------------------------------  192 (368)
Q Consensus       193 --------------------------------------------------------------------------------  192 (368)
                                                                                                      
T Consensus       245 ~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dp~~~~~l~P~~  324 (540)
T 3gwf_A          245 AVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAEIIEDPETARKLMPKG  324 (540)
T ss_dssp             SSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHHHHHHHHHHHCCSHHHHHHHCCCS
T ss_pred             cccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCCCC
Confidence                                                                                            


Q ss_pred             ----------------HcCCcEEEe--cceeeecccCCCeEEcCCCcEEecCEEEEccCCCCCchhhhccccc----ccc
Q 017664          193 ----------------TSKKVEVIL--NQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILK----DSL  250 (368)
Q Consensus       193 ----------------~~~gv~i~~--~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~----~~~  250 (368)
                                      .+.+|+++.  ...|.++..+  ++++.||+++++|.||+|||+.++..++....+.    ..+
T Consensus       325 ~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~~--gv~~~dG~~~~~DvIV~ATGf~~~~~~~~~~~i~g~~G~~l  402 (540)
T 3gwf_A          325 LFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAK--GVVTEDGVLHELDVLVFATGFDAVDGNYRRIEIRGRDGLHI  402 (540)
T ss_dssp             CCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECSS--EEEETTCCEEECSEEEECCCBSCSSHHHHTSEEECGGGCBH
T ss_pred             CCccccCCCccHHHHhcCCCEEEEeCCCCCccEEecC--eEEcCCCCEEECCEEEECCccCccccCcCcceEECCCCcCH
Confidence                            145888885  6778776543  7999999999999999999999876444432210    011


Q ss_pred             CC--CCcEEeCCCeeecCCCCeEEe-cccCCCCccchHHHHHHHHHHHHHHHHHHHcCC
Q 017664          251 DG--RGRLMVDENLRVRGFKNVFAI-GDITDIPEIKQGYLAQKHALVTAKNLKKLMMGR  306 (368)
Q Consensus       251 ~~--~g~i~vd~~~~~~~~~~ifa~-GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~  306 (368)
                      ++  ++.+.....+.+.+.||+|++ |......  .....+..|++.+++.|.....++
T Consensus       403 ~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~~~--s~~~~~e~q~~~i~~~i~~~~~~~  459 (540)
T 3gwf_A          403 NDHWDGQPTSYLGVSTANFPNWFMVLGPNGPFT--NLPPSIETQVEWISDTIGYAERNG  459 (540)
T ss_dssp             HHHTSSSCCCBTTTBCTTCTTEEESSCSSCBCS--CHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhhccChhhccccccCCCCceEEEecCCCCCc--cHHHHHHHHHHHHHHHHHHHHHCC
Confidence            11  122333344677789999998 7765422  256788899999999887665443

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.95  E-value=7.1e-28  Score=239.34  Aligned_cols=254  Identities=19%  Similarity=0.221  Sum_probs=173.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccceeeeecccccccceeeccccc--CceeEEEeEEEEe
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYL--SNVKIVVSTAVSI   90 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   90 (368)
                      .+++||+||||||||++||..|++ |++|+|||+++.+++.+.............+......+++  .+++++....+..
T Consensus       371 ~~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~  450 (671)
T 1ps9_A          371 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA  450 (671)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcEecH
Confidence            446899999999999999999984 9999999999888755432111111000000011111111  1455544432211


Q ss_pred             eccEEEecCCeEE-EecEEEEecCCCCCCCCchH---HHHHHHHHHHH-HHhcCCeEEEEcCchhHHHHHHHHhhhC---
Q 017664           91 TDTEVVTAGGQTF-VYDYVVVATGHVESVPKSRT---ERLSQYEKDFE-KVKSANSVLIVGGGPTGVELAGEIAVDF---  162 (368)
Q Consensus        91 ~~~~v~~~~g~~~-~~d~lvlAtG~~~~~p~~~~---~~~~~~~~~~~-~~~~~~~v~VvG~g~~~~e~a~~l~~~~---  162 (368)
                                ..+ .||+||+|||+.|..|++++   ..+.+...... ....+++++|||+|++|+|+|..|.+..   
T Consensus       451 ----------~~~~~~d~lviAtG~~p~~~~i~G~~~~~v~~~~~~l~~~~~~~~~VvVIGgG~~g~E~A~~l~~~G~~v  520 (671)
T 1ps9_A          451 ----------DQLQAFDETILASGIVPRTPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGEST  520 (671)
T ss_dssp             ----------SSSCCSSEEEECCCEEECCCCCBTTTSTTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             ----------HHhhcCCEEEEccCCCcCCCCCCCCCCCcEeeHHHHhhCCCCCCCeEEEECCChhHHHHHHHHHhcCCCc
Confidence                      123 89999999999976665432   22222222222 1235789999999999999999987421   


Q ss_pred             --------------------------------CCCeEEEEecCccccc-ccCchhHHHHHHHHHcCCcEEEecceeeecc
Q 017664          163 --------------------------------PDKKVILVHRGPKLLE-FVGSRASQIALDWLTSKKVEVILNQSVTLNT  209 (368)
Q Consensus       163 --------------------------------~~~~v~~i~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~  209 (368)
                                                      ...+|+++++.+..+. .+++.....+.+.++++||++++++.+.+++
T Consensus       521 tv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~~~~~~~~~~l~~~GV~v~~~~~v~~i~  600 (671)
T 1ps9_A          521 SQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKID  600 (671)
T ss_dssp             GGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEE
T ss_pred             ccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchhhccccccccHHHHHHHHHhcCCEEEeCcEEEEEe
Confidence                                            0146778877665443 4566777788899999999999999999887


Q ss_pred             cCCCeEEc-CCC--cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHH
Q 017664          210 ISDGLIET-SSG--ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGY  286 (368)
Q Consensus       210 ~~~~~v~~-~~g--~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~  286 (368)
                      .+  .+.+ .+|  +++++|.||+++|++|+.+++....                  . ..++||++|||+.... +.+.
T Consensus       601 ~~--~v~~~~~G~~~~i~~D~Vi~a~G~~p~~~l~~~l~------------------~-~g~~v~aiGD~~~~~~-~~~~  658 (671)
T 1ps9_A          601 DD--GLHVVINGETQVLAVDNVVICAGQEPNRALAQPLI------------------D-SGKTVHLIGGCDVAME-LDAR  658 (671)
T ss_dssp             TT--EEEEEETTEEEEECCSEEEECCCEEECCTTHHHHH------------------T-TTCCEEECGGGTCCSS-CCHH
T ss_pred             CC--eEEEecCCeEEEEeCCEEEECCCccccHHHHHHHH------------------h-cCCCEEEECCcCccCc-hhHH
Confidence            43  3433 567  5799999999999999987765321                  1 2479999999997643 3588


Q ss_pred             HHHHHHHHHHHHH
Q 017664          287 LAQKHALVTAKNL  299 (368)
Q Consensus       287 ~a~~~g~~aa~~i  299 (368)
                      .|++||+.+|.||
T Consensus       659 ~A~~~g~~aA~~i  671 (671)
T 1ps9_A          659 RAIAQGTRLALEI  671 (671)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999999985

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.93  E-value=5.2e-26  Score=219.86  Aligned_cols=283  Identities=18%  Similarity=0.205  Sum_probs=172.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeee-----e---------ccc----cc-ccceeec
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAV-----V---------EPS----FA-VRSVINH   73 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~-----~---------~~~----~~-~~~~~~~   73 (368)
                      +.++||+|||||++|+++|.+|+ .|.+|+|||+++.+|+.|..-..-     .         .+.    .. ...+...
T Consensus         7 ~~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~   86 (545)
T 3uox_A            7 SPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQ   86 (545)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBH
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCH
Confidence            34689999999999999999998 599999999998877554211000     0         000    00 0000000


Q ss_pred             c---ccc----C--ce--eE-EEeEEEEe--ecc----EEEecCCeEEEecEEEEecC--CCCCCCCchHH------HHH
Q 017664           74 G---DYL----S--NV--KI-VVSTAVSI--TDT----EVVTAGGQTFVYDYVVVATG--HVESVPKSRTE------RLS  127 (368)
Q Consensus        74 ~---~~~----~--~~--~~-~~~~~~~~--~~~----~v~~~~g~~~~~d~lvlAtG--~~~~~p~~~~~------~~~  127 (368)
                      .   .++    .  ++  .+ ...++..+  +..    .|.+.+|+++.||+||+|||  +.|..|++++.      .++
T Consensus        87 ~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~h  166 (545)
T 3uox_A           87 PEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIKGIDSFKGESFH  166 (545)
T ss_dssp             HHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---CCCTTGGGCCSEEEE
T ss_pred             HHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCCCCCCccccCCCeEE
Confidence            0   000    0  11  11 12233333  333    78888999999999999999  66665554321      122


Q ss_pred             HHHHHHH-------HHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc-ccccCchhHHHH-----------
Q 017664          128 QYEKDFE-------KVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL-LEFVGSRASQIA-----------  188 (368)
Q Consensus       128 ~~~~~~~-------~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~-l~~~~~~~~~~~-----------  188 (368)
                      .......       ....+++|+|||+|.+|+|+|..|.+  .+.+|++++|.+.. ++..++++....           
T Consensus       167 ~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~--~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~p~~  244 (545)
T 3uox_A          167 SSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAE--TAKELYVFQRTPNWCTPLGNSPMSKEKMDSLRNRYPTI  244 (545)
T ss_dssp             GGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTT--TBSEEEEEESSCCCCEECCCCBCCHHHHHHHHHTHHHH
T ss_pred             cccccccccccccccccCCCeEEEECCCccHHHHHHHHHh--hCCEEEEEEcCCCccccCCcCCCCHHHHHHHHhhhHHH
Confidence            2221111       22357999999999999999999985  47899999999873 333222111100           


Q ss_pred             --------------------------------------------------------------------------------
Q 017664          189 --------------------------------------------------------------------------------  188 (368)
Q Consensus       189 --------------------------------------------------------------------------------  188 (368)
                                                                                                      
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~  324 (545)
T 3uox_A          245 LEYVKSTDTAFPYHRDPRKGTDVSESERDAFFEELYRQPGYGIWLSGFRDLLLNKESNKFLADFVAKKIRQRVKDPVVAE  324 (545)
T ss_dssp             HHHHTTSSSSSSCCCBSSCGGGSCHHHHHHHHHHHHHSSSTHHHHTSBTTTTTCHHHHHHHHHHHHHHHHHHCSCHHHHH
T ss_pred             HHHHhhcccccccccccchhhhCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence                                                                                            


Q ss_pred             --------------------HHHHHcCCcEEEe--cceeeecccCCCeEEcCCCcEEecCEEEEccCCCCCchhhhcccc
Q 017664          189 --------------------LDWLTSKKVEVIL--NQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETIL  246 (368)
Q Consensus       189 --------------------~~~l~~~gv~i~~--~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l  246 (368)
                                          .+.+.+.||+++.  ...|+++..+  ++++.+| ++++|.||+|||+.+++.++....+
T Consensus       325 ~l~P~~~~~g~kR~~~~~~y~~al~~~nV~lv~~~~~~I~~it~~--gv~~~dG-~~~~D~IV~ATGf~~~~~~~~~~~i  401 (545)
T 3uox_A          325 KLIPKDHPFGAKRVPMETNYYETYNRDNVHLVDIREAPIQEVTPE--GIKTADA-AYDLDVIIYATGFDAVTGSLDRIDI  401 (545)
T ss_dssp             HTSCSSSCTTSSCCCEESSHHHHTTSTTEEEEETTTSCEEEEETT--EEEESSC-EEECSEEEECCCCBSSSCSCTTSEE
T ss_pred             hCCCCCCCCCCCccCCCccHHHHhcCCCEEEEecCCCCceEEccC--eEEeCCC-eeecCEEEECCccccccccCCCceE
Confidence                                1112233788876  6778776543  7899999 9999999999999976544332211


Q ss_pred             ccccCCCCcEEeC----------CCeeecCCCCeEEecccCCC-CccchHHHHHHHHHHHHHHHHHHHcC
Q 017664          247 KDSLDGRGRLMVD----------ENLRVRGFKNVFAIGDITDI-PEIKQGYLAQKHALVTAKNLKKLMMG  305 (368)
Q Consensus       247 ~~~~~~~g~i~vd----------~~~~~~~~~~ifa~GD~~~~-~~~~~~~~a~~~g~~aa~~i~~~l~g  305 (368)
                         ...+| ..++          ..+.+.+.||+|.+.--... ........+..|++.+++.|.....+
T Consensus       402 ---~g~~G-~~l~~~w~~~~~~y~g~~~~gfPN~f~~~gp~~~~~~~s~~~~~e~~~~~i~~~i~~~~~~  467 (545)
T 3uox_A          402 ---RGKDN-VRLIDAWAEGPSTYLGLQARGFPNFFTLVGPHNGSTFCNVGVCGGLQAEWVLRMISYMKDN  467 (545)
T ss_dssp             ---ECGGG-CBHHHHTTTSCCCBTTTBCTTCTTEEECSSGGGTGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---ECCCC-ccHHHhhccccceeeccccCCCCcEEEEeCCCCCCccccHHHHHHHHHHHHHHHHHHHHHC
Confidence               11122 2222          23456689999997433221 12234567889999999988765543

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.93  E-value=2.4e-25  Score=215.94  Aligned_cols=286  Identities=17%  Similarity=0.210  Sum_probs=177.6

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccce--e---ee--------e-ccc------ccc----
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASL--R---AV--------V-EPS------FAV----   67 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~--~---~~--------~-~~~------~~~----   67 (368)
                      .+..+||+|||||++|+++|..|+ .|.+|+|+|+++.+|+.|..-  .   ..        . .+.      ...    
T Consensus        13 ~~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~   92 (542)
T 1w4x_A           13 PPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYAS   92 (542)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCB
T ss_pred             CCCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCC
Confidence            344689999999999999999998 499999999998876544210  0   00        0 000      000    


Q ss_pred             -cceeec----ccccC-ceeEE-EeEEEEee--c----cEEEecCCeEEEecEEEEecCC--CCCCCCchHH------HH
Q 017664           68 -RSVINH----GDYLS-NVKIV-VSTAVSIT--D----TEVVTAGGQTFVYDYVVVATGH--VESVPKSRTE------RL  126 (368)
Q Consensus        68 -~~~~~~----~~~~~-~~~~~-~~~~~~~~--~----~~v~~~~g~~~~~d~lvlAtG~--~~~~p~~~~~------~~  126 (368)
                       ..+..+    .+.+. +..+. ..++..++  .    ..|.+.+|+++++|+||+|||.  .|.+|.+++.      .+
T Consensus        93 ~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~~p~i~G~~~f~G~~~  172 (542)
T 1w4x_A           93 QPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPNFPGLKDFAGNLY  172 (542)
T ss_dssp             HHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCCCCCCTTGGGCCSEEE
T ss_pred             HHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCceE
Confidence             000000    00000 11222 22344332  2    1577778888999999999995  4666554321      12


Q ss_pred             HHHHHHHH-HHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc-ccccCchh----H---------------
Q 017664          127 SQYEKDFE-KVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL-LEFVGSRA----S---------------  185 (368)
Q Consensus       127 ~~~~~~~~-~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~-l~~~~~~~----~---------------  185 (368)
                      ++.....+ ....+++|+|||+|.+|+|++..+.+.  +.+|+++.|.+.. ++..+..+    .               
T Consensus       173 hs~~~~~~~~~~~gk~V~VIG~G~sg~e~a~~l~~~--~~~vtv~~r~~~~~~p~~~~~~~~~~~~~~~~~~p~l~~~~~  250 (542)
T 1w4x_A          173 HTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQ--AAELFVFQRTPHFAVPARNAPLDPEFLADLKKRYAEFREESR  250 (542)
T ss_dssp             EGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHH--BSEEEEEESSCCCEEECCCCBCCHHHHHHHHTTHHHHHHHHH
T ss_pred             ECCCCCCchhccCCCEEEEECCCccHHHHHHHHhhc--CceEEEEEcCCcccccCCCCCCCHHHHHHHHhhCHHHHHHHH
Confidence            22211101 123579999999999999999999864  7899999988765 23211100    0               


Q ss_pred             --------------------------------------------------------HHHHH-------------------
Q 017664          186 --------------------------------------------------------QIALD-------------------  190 (368)
Q Consensus       186 --------------------------------------------------------~~~~~-------------------  190 (368)
                                                                              +.+.+                   
T Consensus       251 ~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~  330 (542)
T 1w4x_A          251 NTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVAERLVPKG  330 (542)
T ss_dssp             TSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHHHHHHHHHCSSHHHHHHHSCCS
T ss_pred             hhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCHHHHHhcCCCC
Confidence                                                                    00001                   


Q ss_pred             ----------------HHHcCCcEEE--ecceeeecccCCCeEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCC
Q 017664          191 ----------------WLTSKKVEVI--LNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDG  252 (368)
Q Consensus       191 ----------------~l~~~gv~i~--~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~  252 (368)
                                      .+.+.+|+++  .+..|+++..  ++|++.| +++++|.||+|||+.++..++....+   ...
T Consensus       331 ~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~--~gv~~~d-~~~~~D~ii~atG~~~~~~~~~~~~i---~g~  404 (542)
T 1w4x_A          331 YPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITP--RGVRTSE-REYELDSLVLATGFDALTGALFKIDI---RGV  404 (542)
T ss_dssp             SCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECS--SEEEESS-CEEECSEEEECCCCCCTTHHHHTSEE---ECG
T ss_pred             CCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEcC--CeEEeCC-eEEecCEEEEcCCccccccCcCceee---ECC
Confidence                            1112356665  2556776653  4788888 89999999999999987666654322   122


Q ss_pred             CCcEEeC---------CCeeecCCCCeEEe-cccCCCCccchHHHHHHHHHHHHHHHHHHHcCC
Q 017664          253 RGRLMVD---------ENLRVRGFKNVFAI-GDITDIPEIKQGYLAQKHALVTAKNLKKLMMGR  306 (368)
Q Consensus       253 ~g~i~vd---------~~~~~~~~~~ifa~-GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~  306 (368)
                      +|....+         ..+.+.+.||+|++ |+.+..........+..|++.++++|.....++
T Consensus       405 ~G~~l~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~~~~~~~~~~e~q~~~ia~~i~~~~~~~  468 (542)
T 1w4x_A          405 GNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIAYMFKNG  468 (542)
T ss_dssp             GGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGGGSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCHHHhhcCchheecccccCCCCceEEEcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHCC
Confidence            3433332         23666689999998 998643333356889999999999999877654

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.92  E-value=2.3e-25  Score=215.62  Aligned_cols=283  Identities=18%  Similarity=0.186  Sum_probs=171.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeecccee-----eeec-----ccccc---------cceeec
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLR-----AVVE-----PSFAV---------RSVINH   73 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~-----~~~~-----~~~~~---------~~~~~~   73 (368)
                      ..++||+|||||++|+++|..|+ .|.+|+|||+++.+|+.|..-.     ..+.     ..+..         ..+...
T Consensus        19 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~   98 (549)
T 4ap3_A           19 TTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQ   98 (549)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBH
T ss_pred             CCCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCH
Confidence            34679999999999999999998 5999999999988775442110     0000     00000         000000


Q ss_pred             c---ccc------Cce--eEE-EeEEEEe--ecc----EEEecCCeEEEecEEEEecC--CCCCCCCchHHH------HH
Q 017664           74 G---DYL------SNV--KIV-VSTAVSI--TDT----EVVTAGGQTFVYDYVVVATG--HVESVPKSRTER------LS  127 (368)
Q Consensus        74 ~---~~~------~~~--~~~-~~~~~~~--~~~----~v~~~~g~~~~~d~lvlAtG--~~~~~p~~~~~~------~~  127 (368)
                      .   +++      .++  .+. ..++..+  +..    .|.+.+|+++.||+||+|||  +.|..|++++..      ++
T Consensus        99 ~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~~  178 (549)
T 4ap3_A           99 PEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPAFDGLDRFTGDIVH  178 (549)
T ss_dssp             HHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCCCCTTGGGCCSEEEE
T ss_pred             HHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCceEE
Confidence            0   000      011  222 2234444  333    77888898899999999999  556665543211      22


Q ss_pred             HHHHH-HHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc-ccccCchhHHHHH----------------
Q 017664          128 QYEKD-FEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL-LEFVGSRASQIAL----------------  189 (368)
Q Consensus       128 ~~~~~-~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~-l~~~~~~~~~~~~----------------  189 (368)
                      ..... ......+++|+|||+|.+|+|+|..|.+.  +.+|++++|.+.. +|..++++.....                
T Consensus       179 ~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~--~~~Vtv~~r~~~~ilp~~~~~~~~~~~~~l~~~~~~~~~~~r~  256 (549)
T 4ap3_A          179 TARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQ--AEQLFVFQRSANYSIPAGNVPLDDATRAEQKANYAERRRLSRE  256 (549)
T ss_dssp             GGGCCTTCCCCBTCEEEEECCSHHHHHHHHHHHHH--BSEEEEEESSCCCEEECC----CHHHHHHHHHTHHHHHHHHHH
T ss_pred             eccccccccccCCCEEEEECCCchHHHHHHHHHhh--CCEEEEEECCCCccccCcCCCCCHHHHHHHHhccHHHHHHHHh
Confidence            22111 11123589999999999999999999964  7899999999873 3322211111100                


Q ss_pred             ------------------------------------------------------------------------H-------
Q 017664          190 ------------------------------------------------------------------------D-------  190 (368)
Q Consensus       190 ------------------------------------------------------------------------~-------  190 (368)
                                                                                              +       
T Consensus       257 ~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~l~P~~~  336 (549)
T 4ap3_A          257 SGGGSPHRPHPKSALEVSEEERRAVYEERWKLGGVLFSKAFPDQLTDPAANDTARAFWEEKIRAVVDDPAVAELLTPKDH  336 (549)
T ss_dssp             SSSSSSCCCCSSCTTSSCHHHHHHHHHHHHHHCHHHHTTSSTTTTTCHHHHHHHHHHHHHHHHHHCSCHHHHHHHSCSSC
T ss_pred             hccccccccCccchhcCCHHHHHHHHHHHHhhcchHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCCCCC
Confidence                                                                                    0       


Q ss_pred             ---------------HHHcCCcEEE--ecceeeecccCCCeEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCC
Q 017664          191 ---------------WLTSKKVEVI--LNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGR  253 (368)
Q Consensus       191 ---------------~l~~~gv~i~--~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~  253 (368)
                                     .+.+.+|+++  ....|+++..  .++++.+| ++++|.||+|||+.++..++....+    ..+
T Consensus       337 ~~~~kR~~~~~~y~~al~~~~V~lvd~~~~~I~~it~--~gv~~~dG-~~~~D~iI~ATGf~~~~~~~~~~~i----~g~  409 (549)
T 4ap3_A          337 AIGAKRIVLDSGYYETYNRDNVELVDLRSTPIVGMDE--TGIVTTGA-HYDLDMIVLATGFDAMTGSLDKLEI----VGR  409 (549)
T ss_dssp             CBTTBCCEEESSTGGGGGSTTEEEEETTTSCEEEEET--TEEEESSC-EEECSEEEECCCEEESSTTGGGSEE----ECG
T ss_pred             CCCccccCCCccHHHHhcCCCEEEEeCCCCCceEEeC--CcEEeCCC-ceecCEEEECCcccccccccCceeE----ECC
Confidence                           0123378877  2466776654  37899999 9999999999999987544433221    111


Q ss_pred             CcEEeC----------CCeeecCCCCeEEecc-cCCCCccchHHHHHHHHHHHHHHHHHHHcC
Q 017664          254 GRLMVD----------ENLRVRGFKNVFAIGD-ITDIPEIKQGYLAQKHALVTAKNLKKLMMG  305 (368)
Q Consensus       254 g~i~vd----------~~~~~~~~~~ifa~GD-~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g  305 (368)
                      +...++          ..+.+.+.||+|.+.- -...........+..|++.+++.|.....+
T Consensus       410 ~G~~l~~~w~~~~~~y~g~~~~gfPN~f~~~Gp~~~~~~~s~~~~~e~~~~~i~~~i~~~~~~  472 (549)
T 4ap3_A          410 GGRTLKETWAAGPRTYLGLGIDGFPNFFNLTGPGSPSVLANMVLHSELHVDWVADAIAYLDAR  472 (549)
T ss_dssp             GGCBHHHHTTTSCCCBTTTBCTTCTTEEETTCTTSCGGGSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHhhccchhhccccccCCCCcEEEEeCCCCCCcCccHHHHHHHHHHHHHHHHHHHHHC
Confidence            122232          2355668999999633 322122235567889999999888765544

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.90  E-value=7.9e-23  Score=169.66  Aligned_cols=156  Identities=21%  Similarity=0.221  Sum_probs=131.4

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------cc-----CchhHHHHHHHHHcCCcEEEecceee
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE---------FV-----GSRASQIALDWLTSKKVEVILNQSVT  206 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~---------~~-----~~~~~~~~~~~l~~~gv~i~~~~~v~  206 (368)
                      +++|||+|++|+++|..|.+  .+.+|+++++.+..++         .+     ++++.+.+.+.+++.|++++++ +++
T Consensus         3 ~vvIIGgG~~Gl~~A~~l~~--~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~   79 (180)
T 2ywl_A            3 DVIVVGGGPSGLSAALFLAR--AGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVK   79 (180)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCC
T ss_pred             eEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEE
Confidence            68999999999999999986  4789999999876552         22     3567888889999999999999 999


Q ss_pred             ecccCCC--eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccch
Q 017664          207 LNTISDG--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQ  284 (368)
Q Consensus       207 ~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~  284 (368)
                      +++.+++  .+.+++| ++++|.+|+|+|..|+  +.+..++  +++ +|++.||+++|+ +.|+|||+|||+..+. ++
T Consensus        80 ~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~--~~~~~g~--~~~-~g~i~vd~~~~t-~~~~i~a~GD~~~~~~-~~  151 (180)
T 2ywl_A           80 GVRDMGGVFEVETEEG-VEKAERLLLCTHKDPT--LPSLLGL--TRR-GAYIDTDEGGRT-SYPRVYAAGVARGKVP-GH  151 (180)
T ss_dssp             EEEECSSSEEEECSSC-EEEEEEEEECCTTCCH--HHHHHTC--CEE-TTEECCCTTCBC-SSTTEEECGGGGTCCS-CC
T ss_pred             EEEEcCCEEEEEECCC-EEEECEEEECCCCCCC--ccccCCC--Ccc-CceEEeCCCCCc-CCCCEEEeecccCcch-hh
Confidence            8876654  6788888 8999999999999974  3444444  566 899999999999 8999999999998754 36


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCC
Q 017664          285 GYLAQKHALVTAKNLKKLMMGRN  307 (368)
Q Consensus       285 ~~~a~~~g~~aa~~i~~~l~g~~  307 (368)
                      +..|.+||+.||.||.+.+.+++
T Consensus       152 ~~~A~~~g~~aa~~i~~~~~~~~  174 (180)
T 2ywl_A          152 AIISAGDGAYVAVHLVSDLRGEP  174 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHhHHHHHHHHHHHhhhcc
Confidence            88999999999999999888763

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=99.87  E-value=9.3e-21  Score=181.76  Aligned_cols=195  Identities=12%  Similarity=0.169  Sum_probs=118.3

Q ss_pred             eEEEecEEEEecCCCCCCCCch---HHHHHHHHHHH------HHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEe
Q 017664          101 QTFVYDYVVVATGHVESVPKSR---TERLSQYEKDF------EKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVH  171 (368)
Q Consensus       101 ~~~~~d~lvlAtG~~~~~p~~~---~~~~~~~~~~~------~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~  171 (368)
                      .++.++.||+|||..|.+|+..   ..-+++.....      .....+|+|+|||+|.||+|++..|.++..+.+|+++.
T Consensus       199 ~~~~ar~vVlatG~~P~iP~~~~~~g~v~Hss~y~~~~~~~~~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~  278 (501)
T 4b63_A          199 SARRTRKVVIAIGGTAKMPSGLPQDPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIM  278 (501)
T ss_dssp             EEEEEEEEEECCCCEECCCTTSCCCTTEEEGGGHHHHHHHHSCCTTSCCEEEEECCSHHHHHHHHHHHHHSTTCEEEEEC
T ss_pred             EEEEeCEEEECcCCCCCCCCCCCCCcceeeccccccchhhccccccCCcEEEEECCcHHHHHHHHHHHhcCCCceEEEEe
Confidence            4688999999999998888742   22222222111      12246899999999999999999998777788999999


Q ss_pred             cCcccccc---------cCchhHHHH-------------------------------H-----HHHH-----cCCcEEEe
Q 017664          172 RGPKLLEF---------VGSRASQIA-------------------------------L-----DWLT-----SKKVEVIL  201 (368)
Q Consensus       172 ~~~~~l~~---------~~~~~~~~~-------------------------------~-----~~l~-----~~gv~i~~  201 (368)
                      |++.+.+.         +.++..+.+                               .     +.+.     .....+..
T Consensus       279 R~~~~~p~~~s~~~~~~f~p~~~~~f~~l~~~~r~~~~~~~~~~~~~~v~~~li~~i~~~~y~~~~~~~~~~~~~~~l~~  358 (501)
T 4b63_A          279 RDSAMRPSDDSPFVNEIFNPERVDKFYSQSAAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQWQHRILP  358 (501)
T ss_dssp             SSSSCCBCCCCTTGGGGGSTTHHHHHHTSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCSCGGGCSSEEEC
T ss_pred             CCCccccccccccchhhcCHHHHHHHHhCCHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhccCCCcccccceeecC
Confidence            98765431         122211111                               0     1111     01123444


Q ss_pred             cceeeecccCC----------------CeEEcCCCcEEecCEEEEccCCCCCc-hhhhccccccccCCCCcEEeCCCeee
Q 017664          202 NQSVTLNTISD----------------GLIETSSGETIDTDCHFMCTGKAMAS-SWLRETILKDSLDGRGRLMVDENLRV  264 (368)
Q Consensus       202 ~~~v~~i~~~~----------------~~v~~~~g~~i~~d~vi~a~G~~p~~-~~~~~~~l~~~~~~~g~i~vd~~~~~  264 (368)
                      +..+..++...                ..+.+.+|+++++|.||+|||++++. +++....-.+..+.+|.+.|+.+++.
T Consensus       359 ~~~v~~~~~~~~~~~~~v~~~~~~~~~~~v~~~dg~~~~~D~VI~ATGy~~~~p~~L~~~~~~l~~d~~g~~~v~rdy~~  438 (501)
T 4b63_A          359 ERKITRVEHHGPQSRMRIHLKSSKPESEGAANDVKETLEVDALMVATGYNRNAHERLLSKVQHLRPTGQDQWKPHRDYRV  438 (501)
T ss_dssp             SEEEEEEECCSSSSCEEEEEEESCC--------CCCEEEESEEEECCCEECCTHHHHTGGGGGGSSTTCCSCCBCTTSBB
T ss_pred             CcceeeeeecCCCCeEEEEeeeeEEeCCeeEeCCCeEEECCEEEECcCCCCCCcchhcchhhhcCcCcCCCeeeCCCcEE
Confidence            44443332211                14557788999999999999999874 34333222235677788899987665


Q ss_pred             c-------CCCCeEEecccC---CCCccchHHHHHHHHHHH
Q 017664          265 R-------GFKNVFAIGDIT---DIPEIKQGYLAQKHALVT  295 (368)
Q Consensus       265 ~-------~~~~ifa~GD~~---~~~~~~~~~~a~~~g~~a  295 (368)
                      .       ..++||+.|-+-   +...+.+...|.+.|+++
T Consensus       439 ~~~~~~~~~~~~i~~qg~~~~thG~~~~~Ls~~a~R~~~I~  479 (501)
T 4b63_A          439 EMDPSKVSSEAGIWLQGCNERTHGLSDSLLSVLAVRGGEMV  479 (501)
T ss_dssp             CCCTTTBCTTCEEEECSCCHHHHCTTTTSSTTHHHHHHHHH
T ss_pred             eecCCccCCCceEEecCCCcccCCcchhhHHHHHHHHHHHH
Confidence            2       246799998543   222333556788877643

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.60  E-value=2.9e-15  Score=129.07  Aligned_cols=156  Identities=19%  Similarity=0.159  Sum_probs=108.6

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc-----------------ccccc-------CchhHHHHHHHHHcC
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK-----------------LLEFV-------GSRASQIALDWLTSK  195 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~-----------------~l~~~-------~~~~~~~~~~~l~~~  195 (368)
                      .+|+|||+|++|+++|..|++  .+.+|+++++...                 +...+       ...+...+.+.+++.
T Consensus         4 ~dVvVVGgG~aGl~aA~~la~--~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~~   81 (232)
T 2cul_A            4 YQVLIVGAGFSGAETAFWLAQ--KGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGL   81 (232)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--TTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTC
T ss_pred             CCEEEECcCHHHHHHHHHHHH--CCCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHcC
Confidence            479999999999999999986  4889999998721                 11111       125567777888887


Q ss_pred             -CcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCCCCCch--------------------h---hhcccccc
Q 017664          196 -KVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGKAMASS--------------------W---LRETILKD  248 (368)
Q Consensus       196 -gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~~p~~~--------------------~---~~~~~l~~  248 (368)
                       |++++ +++|+++..+++   .+.+.+|+++++|.||+|+|..++..                    +   +...++  
T Consensus        82 ~gv~i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~~l~~~g~--  158 (232)
T 2cul_A           82 RPLHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLGF--  158 (232)
T ss_dssp             TTEEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHHHTTC--
T ss_pred             CCcEEE-EeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCHHHHhCCC--
Confidence             99999 568888876555   47788888899999999999854321                    1   111111  


Q ss_pred             ccCCC--------Cc-------EEeCC------CeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHH
Q 017664          249 SLDGR--------GR-------LMVDE------NLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLM  303 (368)
Q Consensus       249 ~~~~~--------g~-------i~vd~------~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l  303 (368)
                      .++..        |.       ..+..      .+..++.|+||++|||+ ...  +...|..||+.+|.+|.+.|
T Consensus       159 ~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~~g--~~~~~~~~g~~~a~~i~~~l  231 (232)
T 2cul_A          159 RFVEREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-REG--DYARMSEEGKRLAEHLLHEL  231 (232)
T ss_dssp             CEEEEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-SCC--CHHHHHHHHHHHHHHHHHHC
T ss_pred             eEEccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-cCc--cHHHHHHHHHHHHHHHHhhc
Confidence            11100        00       11111      22324899999999999 544  67788999999999998765

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.58  E-value=2.3e-16  Score=150.14  Aligned_cols=181  Identities=16%  Similarity=0.084  Sum_probs=103.2

Q ss_pred             eEEEecEEEEecCCCCCCCCc-------hHHHHHHHHHH------HHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeE
Q 017664          101 QTFVYDYVVVATGHVESVPKS-------RTERLSQYEKD------FEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKV  167 (368)
Q Consensus       101 ~~~~~d~lvlAtG~~~~~p~~-------~~~~~~~~~~~------~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v  167 (368)
                      ..+.+|.+|+|||..+..+..       .+..+.-....      .+........+++|+|  +++++..+..  .+..+
T Consensus       161 g~~~a~~VVlAtGg~~~~~~~~~~~~~~tGdgi~~a~~aGa~~~d~e~~q~~p~~~~~ggg--~~~~ae~~~~--~G~~~  236 (472)
T 2e5v_A          161 LVEDVDKLVLATGGYSYLYEYSSTQSTNIGDGMAIAFKAGTILADMEFVQFHPTVTSLDGE--VFLLTETLRG--EGAQI  236 (472)
T ss_dssp             EECCCSEEEECCCCCGGGSSSBSSCTTCSCHHHHHHHHTTCCEECTTCEEEEEEEECGGGC--CEECCTHHHH--TTCEE
T ss_pred             CeEEeeeEEECCCCCcccCccccCCCCCchHHHHHHHHcCCCEeCCcceEEEeEEEccCCC--ceeeehhhcC--CceEE
Confidence            357799999999998544332       23333222221      0101111233445665  6666666653  35555


Q ss_pred             EEEecCcccccccCchh--------HHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCCcEEe-cCEEEEccCCCCCc
Q 017664          168 ILVHRGPKLLEFVGSRA--------SQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETID-TDCHFMCTGKAMAS  238 (368)
Q Consensus       168 ~~i~~~~~~l~~~~~~~--------~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~i~-~d~vi~a~G~~p~~  238 (368)
                       +..+++++++.+++..        ...+.+.+++.|. ++.+...  +.   .   +  .++++ .+.++.+.|..|+ 
T Consensus       237 -v~~~g~rf~~~~~~~~el~~rd~v~~~i~~~~~~~~~-v~ld~~~--~~---~---~--~~~~~~~~~~~~~~G~dp~-  303 (472)
T 2e5v_A          237 -INENGERFLFNYDKRGELAPRDILSRAIYIEMLKGHK-VFIDLSK--IE---D---F--ERKFPVVAKYLARHGHNYK-  303 (472)
T ss_dssp             -EETTCCCGGGGTCTTGGGSCHHHHHHHHHHHHHHTCC-EEEECTT--CT---T---H--HHHCHHHHHHHHHTTCCTT-
T ss_pred             -ECCCCCCCCccCCcccCcCchhHHHHHHHHHHHhCCc-EEEeccc--hH---H---H--HHHhHHHHHHHHHhCcCcc-
Confidence             7778888887666544        5566666766664 3333211  00   0   0  01233 4677888899988 


Q ss_pred             hhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCc---cchHHHHHHHHHHHHHHHHH
Q 017664          239 SWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPE---IKQGYLAQKHALVTAKNLKK  301 (368)
Q Consensus       239 ~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~---~~~~~~a~~~g~~aa~~i~~  301 (368)
                      +++.....  .....|.|.||+++|| +.|++||+|||++...   ..++..+..++.+.++.+..
T Consensus       304 ~~i~v~p~--~~~~~GGI~vd~~~~t-~ipgLyAaGd~a~~~~hg~~rl~~~sl~~~~v~G~~a~~  366 (472)
T 2e5v_A          304 VKIPIFPA--AHFVDGGIRVNIRGES-NIVNLYAIGEVSDSGLHGANRLASNSLLEGLVFGINLPR  366 (472)
T ss_dssp             SCEECEEE--EEEESCEEECCTTCBC-SSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHGGG
T ss_pred             cceEeehh--hceeCCCeEECCCCcc-ccCCEEecchhcccccCCCCCCCcccHHHHHHHHHHHHH
Confidence            55443222  1223689999999999 7999999999987211   12444555554444444443

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.39  E-value=2.1e-13  Score=126.85  Aligned_cols=39  Identities=18%  Similarity=0.316  Sum_probs=34.1

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCcee
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFE   51 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~   51 (368)
                      |++++||+|||||++|+++|..|+ +|.+|+|+|+++..+
T Consensus         1 MM~~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g   40 (401)
T 2gqf_A            1 MSQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIG   40 (401)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCCCCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCc
Confidence            345689999999999999999997 599999999998653

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.35  E-value=3.4e-12  Score=123.69  Aligned_cols=141  Identities=18%  Similarity=0.219  Sum_probs=81.7

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC-ceeeeccc--------------e---ee--------------ee
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE-YFEITWAS--------------L---RA--------------VV   61 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~-~~~~~~~~--------------~---~~--------------~~   61 (368)
                      ..+||||||||+||++||..|+ .|.+|+|||++. .++...+.              +   ..              ..
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l  106 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRIL  106 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEE
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhh
Confidence            4689999999999999999997 599999999984 22210000              0   00              00


Q ss_pred             ----ccccc-----------ccceeecccccCceeEEEeEEEEee--cc---EEEecCCeEEEecEEEEecCCCCCCCCc
Q 017664           62 ----EPSFA-----------VRSVINHGDYLSNVKIVVSTAVSIT--DT---EVVTAGGQTFVYDYVVVATGHVESVPKS  121 (368)
Q Consensus        62 ----~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~v~~~~g~~~~~d~lvlAtG~~~~~p~~  121 (368)
                          .+...           ...+....+...++++++..+..+.  ..   .|.+.+|..+.+|.||+|||..+..+.+
T Consensus       107 ~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~~~~i  186 (651)
T 3ces_A          107 NASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIH  186 (651)
T ss_dssp             STTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTCCEEE
T ss_pred             hcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEEEEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCccCccc
Confidence                00000           0000000001136788788888774  33   3567788889999999999998654433


Q ss_pred             hHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEe
Q 017664          122 RTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVH  171 (368)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~  171 (368)
                      .+..  ..        .+.+   +| +.++.+++..|.+  .+.+|+.+.
T Consensus       187 ~G~~--~~--------~~gr---iG-g~~a~eLA~~L~~--lG~~v~~~~  220 (651)
T 3ces_A          187 IGLD--NY--------SGGR---AG-DPPSIPLSRRLRE--LPLRVGRLK  220 (651)
T ss_dssp             CC---------------------------CCHHHHHHHT--TTCCEEEEC
T ss_pred             cCcc--cC--------CCCC---cc-chhhhHHHHHHHh--cCCeEEEec
Confidence            2111  10        1222   46 7888999998874  478887774

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.34  E-value=3.2e-14  Score=134.00  Aligned_cols=95  Identities=15%  Similarity=0.112  Sum_probs=72.2

Q ss_pred             CchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccC--------CCCCchhhhcccccccc
Q 017664          181 GSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTG--------KAMASSWLRETILKDSL  250 (368)
Q Consensus       181 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G--------~~p~~~~~~~~~l~~~~  250 (368)
                      +..+...+...+++.| +++++++|++|+.+++  .|.+.+|+++++|.||+|+|        +.|+.+......+... 
T Consensus       203 ~~g~~~l~~~~~~~~g-~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~~~~-  280 (431)
T 3k7m_X          203 SNGSADLVDAMSQEIP-EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVIEEG-  280 (431)
T ss_dssp             TTCTHHHHHHHHTTCS-CEESSCCEEEEECSSSSEEEEETTSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHHHHC-
T ss_pred             CCcHHHHHHHHHhhCC-ceEeCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHHHhC-
Confidence            4455566666777778 9999999999987655  67788888899999999999        7777655544444322 


Q ss_pred             CCCCcEEeCCCeeecCCCCeEEecccCC
Q 017664          251 DGRGRLMVDENLRVRGFKNVFAIGDITD  278 (368)
Q Consensus       251 ~~~g~i~vd~~~~~~~~~~ifa~GD~~~  278 (368)
                      .....+.|+..+++ ..+++|+.||+..
T Consensus       281 ~~~~~~kv~~~~~~-~~~~i~~~~d~~~  307 (431)
T 3k7m_X          281 HGGQGLKILIHVRG-AEAGIECVGDGIF  307 (431)
T ss_dssp             CCCCEEEEEEEEES-CCTTEEEEBSSSS
T ss_pred             CCcceEEEEEEECC-CCcCceEcCCCCE
Confidence            22345899999998 5799999999854

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.21  E-value=8.7e-11  Score=113.45  Aligned_cols=47  Identities=15%  Similarity=0.218  Sum_probs=40.0

Q ss_pred             CCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCCCC
Q 017664          259 DENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNK  308 (368)
Q Consensus       259 d~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~  308 (368)
                      +++|+++..||+|.+|.+.+...   -..|..||.+|+.|.+..+.|+++
T Consensus       381 ~~tLe~k~~~gLf~AGqinGt~G---yeEAaaqGl~AG~nAa~~~~~~~~  427 (637)
T 2zxi_A          381 YPTLETKKIRGLFHAGNFNGTTG---YEEAAGQGIVAGINAALRAFGKEP  427 (637)
T ss_dssp             CTTSBBSSSBTEEECGGGGTBCS---HHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CccccccCCCCEEEeeecCCcch---HHHHHHHHHHHHHHHHHHhcCCCC
Confidence            35799988999999999998633   347999999999999999998864

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.20  E-value=8.5e-11  Score=104.18  Aligned_cols=165  Identities=13%  Similarity=0.068  Sum_probs=108.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc--------------------------------------c
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF--------------------------------------V  180 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~--------------------------------------~  180 (368)
                      ..+|+|||+|++|+.+|..+++ .++.+|+++++.+.+...                                      .
T Consensus        39 ~~dVvIIGgG~aGl~aA~~la~-~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~  117 (284)
T 1rp0_A           39 ETDVVVVGAGSAGLSAAYEISK-NPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKH  117 (284)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHT-STTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred             ccCEEEECccHHHHHHHHHHHH-cCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecC
Confidence            4579999999999999999985 248899999987643210                                      1


Q ss_pred             CchhHHHHHHHHHc-CCcEEEecceeeecccCCC---eEEcC---------CC-----cEEecCEEEEccCCCCCch---
Q 017664          181 GSRASQIALDWLTS-KKVEVILNQSVTLNTISDG---LIETS---------SG-----ETIDTDCHFMCTGKAMASS---  239 (368)
Q Consensus       181 ~~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~---~v~~~---------~g-----~~i~~d~vi~a~G~~p~~~---  239 (368)
                      ...+...+.+.+.+ .|+++++++.|.++..+++   .+.+.         +|     .++++|.+|+|+|..+...   
T Consensus       118 ~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~  197 (284)
T 1rp0_A          118 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATG  197 (284)
T ss_dssp             HHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHH
T ss_pred             HHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHH
Confidence            12334455566655 7999999999998876555   33331         32     5799999999999776532   


Q ss_pred             --hhhccccccccCCCCcEEeCC-------CeeecCCCCeEEecccCCC----C-ccchHHHHHHHHHHHHHHHHHHHcC
Q 017664          240 --WLRETILKDSLDGRGRLMVDE-------NLRVRGFKNVFAIGDITDI----P-EIKQGYLAQKHALVTAKNLKKLMMG  305 (368)
Q Consensus       240 --~~~~~~l~~~~~~~g~i~vd~-------~~~~~~~~~ifa~GD~~~~----~-~~~~~~~a~~~g~~aa~~i~~~l~g  305 (368)
                        .+...++...+.....+.++.       ..++ ..|++|++||++..    + ..++...+..+|+.+|.+|.+.|..
T Consensus       198 ~~~~~~~g~~~~v~~~~g~~~~~~~~~~v~~~~~-~~p~i~a~G~~~~~~~g~~~~gp~~~~~~~sG~~~a~~i~~~l~~  276 (284)
T 1rp0_A          198 VKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTRE-VVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGL  276 (284)
T ss_dssp             HHHHHHTTSSSCCCCCEEECHHHHHHHHHHHCEE-EETTEEECTHHHHHHHTCEECCSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHhhhccCCCCcCCcCCchhhhhhHHHhhcccc-ccCCEEEEeeehhhhcCCCCcChHHHHHHHhHHHHHHHHHHHhhh
Confidence              111111111222222233332       3344 47999999998632    1 0113456789999999999998854

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=99.12  E-value=8.3e-11  Score=113.97  Aligned_cols=46  Identities=20%  Similarity=0.309  Sum_probs=39.2

Q ss_pred             CCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCCCC
Q 017664          260 ENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNK  308 (368)
Q Consensus       260 ~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~  308 (368)
                      ++|+++..||+|++|++++...   -..|..||.+|+.|++..+.|+++
T Consensus       371 ~tle~k~~~gLf~AGqi~g~~G---y~eA~a~G~~AG~naa~~~~~~~~  416 (641)
T 3cp8_A          371 STMETRPVENLFFAGQINGTSG---YEEAAAQGLMAGINAVRKILGKEL  416 (641)
T ss_dssp             TTSBBSSSBTEEECSGGGTBCC---HHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             CcccccCcCCEEEEEeecCCcc---HHHHHHHHHHHHHHHHHHhcCCCC
Confidence            4789977999999999998743   248999999999999999988764

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.12  E-value=3.9e-10  Score=104.35  Aligned_cols=38  Identities=29%  Similarity=0.423  Sum_probs=33.8

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCcee
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFE   51 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~   51 (368)
                      |+++||+||||||||+++|+.|+ +|++|+|+|+.+.++
T Consensus         2 Me~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~   40 (397)
T 3oz2_A            2 METYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIG   40 (397)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTT
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            34699999999999999999998 599999999987654

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.11  E-value=6.1e-10  Score=103.90  Aligned_cols=54  Identities=17%  Similarity=0.230  Sum_probs=46.3

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                      ..+.+.+.+.+++.|++++++++|+.+..+++  .+.+.+| ++.+|.||+|+|..+
T Consensus       132 ~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~VIlAtG~~S  187 (417)
T 3v76_A          132 KDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-TVDAASLVVASGGKS  187 (417)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-EEEESEEEECCCCSS
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-EEEeeEEEECCCCcc
Confidence            36777888889999999999999999887655  6778887 899999999999875

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.05  E-value=1.6e-09  Score=100.82  Aligned_cols=53  Identities=17%  Similarity=0.046  Sum_probs=44.8

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCCCC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                      .+...+.+.+++.|++++++++|+.+..+++   .+.+.+| ++.+|.||+|+|...
T Consensus       175 ~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s  230 (405)
T 2gag_B          175 HVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGHS  230 (405)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchhH
Confidence            6677788889999999999999999887654   4777777 799999999999763

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.04  E-value=2.2e-09  Score=102.92  Aligned_cols=54  Identities=15%  Similarity=0.091  Sum_probs=47.1

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      ..+.+.+.+.+++.|++|+++++|++|..+++   .|++.||+++++|.||.+++..
T Consensus       221 ~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~  277 (501)
T 4dgk_A          221 GALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVV  277 (501)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC--
T ss_pred             cchHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHH
Confidence            36788889999999999999999999998877   5889999999999999988754

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.01  E-value=5.6e-09  Score=95.62  Aligned_cols=62  Identities=8%  Similarity=0.055  Sum_probs=49.4

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCC--cEEecCEEEEccCCCCCchhhhcc
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSG--ETIDTDCHFMCTGKAMASSWLRET  244 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g--~~i~~d~vi~a~G~~p~~~~~~~~  244 (368)
                      ..+...+.+.+++.|++++++++|++++.+++   .+.+.+|  .++++|.||+|+|.. ...++...
T Consensus       150 ~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~-s~~l~~~~  216 (369)
T 3dme_A          150 HALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLH-APGLARRI  216 (369)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGG-HHHHHHTE
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcc-hHHHHHHh
Confidence            46778888899999999999999999987643   5777777  489999999999976 33444444

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.01  E-value=1.9e-09  Score=101.55  Aligned_cols=54  Identities=17%  Similarity=0.199  Sum_probs=46.5

Q ss_pred             chhHHHHHHHHHcCCcEEEecc---eeeecccCCC---eEEcCCCcEEecCEEEEccCCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQ---SVTLNTISDG---LIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~---~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      ..+...+.+.+++.|+++++++   +|+++..+++   .|++.+|+++.+|.||+|+|..
T Consensus       161 ~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~  220 (438)
T 3dje_A          161 RNALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGAS  220 (438)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGG
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCC
Confidence            3567788888999999999999   9999887655   3889999889999999999965

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.00  E-value=2.2e-10  Score=110.09  Aligned_cols=51  Identities=14%  Similarity=0.009  Sum_probs=45.3

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCCcEEecCEEEEccC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTG  233 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G  233 (368)
                      .+.+.+.+.+++.|++++++++|++|..+++.+++.+|+++++|.||.++.
T Consensus       223 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~~v~~~~G~~~~ad~vI~t~P  273 (513)
T 4gde_A          223 GIWIAVANTLPKEKTRFGEKGKVTKVNANNKTVTLQDGTTIGYKKLVSTMA  273 (513)
T ss_dssp             HHHHHHHHTSCGGGEEESGGGCEEEEETTTTEEEETTSCEEEEEEEEECSC
T ss_pred             HHHHHHHHHHHhcCeeeecceEEEEEEccCCEEEEcCCCEEECCEEEECCC
Confidence            566777778888999999999999999888889999999999999999865

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.99  E-value=6.3e-10  Score=106.86  Aligned_cols=56  Identities=16%  Similarity=0.154  Sum_probs=48.7

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCCCCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGKAMA  237 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~~p~  237 (368)
                      ..+.+.+.+.+++.|++++++++|+.+..+++   .+.+.+|+++++|.||+|+|..+.
T Consensus       220 ~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~i~Ad~VVlA~G~~s~  278 (549)
T 3nlc_A          220 VTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSAR  278 (549)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCEEECSCEEECCCTTCH
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChh
Confidence            46677788889999999999999999987665   578899999999999999999864

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.99  E-value=1.2e-09  Score=100.80  Aligned_cols=54  Identities=13%  Similarity=0.054  Sum_probs=45.6

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                      ..+...+.+.+++.|++++.+++|++++.+++  .+.+.+| ++.+|.||+|+|...
T Consensus       164 ~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~s  219 (382)
T 1ryi_A          164 YFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWS  219 (382)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGT
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCcEEEEEEECCEEEEEcCCc-eEEcCEEEECCChhH
Confidence            46778888889999999999999999877655  5677777 799999999999763

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.95  E-value=1.2e-09  Score=102.37  Aligned_cols=61  Identities=11%  Similarity=0.064  Sum_probs=50.0

Q ss_pred             CchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCCcEEecCEEEEccCCCCCchhh
Q 017664          181 GSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWL  241 (368)
Q Consensus       181 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~  241 (368)
                      ...+.+.+.+.+++.|++++++++|++++.+++.+.+.+|+++++|.||+|+|......++
T Consensus       188 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~vV~~~g~~~~ad~Vv~a~~~~~~~~ll  248 (421)
T 3nrn_A          188 CKAVIDELERIIMENKGKILTRKEVVEINIEEKKVYTRDNEEYSFDVAISNVGVRETVKLI  248 (421)
T ss_dssp             HHHHHHHHHHHHHTTTCEEESSCCEEEEETTTTEEEETTCCEEECSEEEECSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCeEEEEEEECCEEEEeCCcEEEeCEEEECCCHHHHHHhc
Confidence            3477888999999999999999999999887664456678899999999999976444444

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.95  E-value=1.3e-09  Score=100.54  Aligned_cols=53  Identities=15%  Similarity=0.109  Sum_probs=45.5

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      ..+...+.+.+++.|++++++++|++++.+++  .|.+.+| ++.+|.||+|+|..
T Consensus       154 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~VV~A~G~~  208 (381)
T 3nyc_A          154 DALHQGYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAG-SYRAAVLVNAAGAW  208 (381)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCCCEEEEETTEEEEECSSE-EEEESEEEECCGGG
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCC-EEEcCEEEECCChh
Confidence            46677888889999999999999999887665  6778887 79999999999975

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.91  E-value=2e-08  Score=92.59  Aligned_cols=54  Identities=11%  Similarity=0.153  Sum_probs=46.3

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCCcEEecCEEEEccCCCCC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMA  237 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~  237 (368)
                      .+.+.+.+.+++.|++++.+++|+.++.+. .+.+.+|+++++|.||.|+|..+.
T Consensus       108 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~v~~~~g~~~~ad~vV~AdG~~s~  161 (379)
T 3alj_A          108 HLHDALVNRARALGVDISVNSEAVAADPVG-RLTLQTGEVLEADLIVGADGVGSK  161 (379)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCCEEEEETTT-EEEETTSCEEECSEEEECCCTTCH
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEEEEEEeCC-EEEECCCCEEEcCEEEECCCccHH
Confidence            567778888888999999999999887744 788888989999999999998753

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.90  E-value=2e-08  Score=92.75  Aligned_cols=69  Identities=16%  Similarity=0.140  Sum_probs=52.8

Q ss_pred             CeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCC
Q 017664          165 KKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       165 ~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                      ....++.+....+.  +..+...+.+.+++.|++++++++|++++.+++  .+.+.+| ++++|.||+|+|...
T Consensus       135 ~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~  205 (389)
T 2gf3_A          135 NYNAIFEPNSGVLF--SENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWN  205 (389)
T ss_dssp             TEEEEEETTCEEEE--HHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGH
T ss_pred             CceEEEeCCCcEEe--HHHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCeEEEEeCCC-EEEeCEEEEecCccH
Confidence            45666666544332  346778888899999999999999999887655  5666666 799999999999763

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.89  E-value=1.6e-08  Score=93.29  Aligned_cols=54  Identities=15%  Similarity=0.017  Sum_probs=45.1

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCCC--e-EEcCCCcEEecCEEEEccCCCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG--L-IETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~-v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                      ..+...+.+.+++.|++++.+++|++++.+++  . +.+.+| ++.+|.||+|+|...
T Consensus       149 ~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s  205 (382)
T 1y56_B          149 FEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWA  205 (382)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhH
Confidence            45677788889999999999999999887655  3 777777 799999999999763

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.89  E-value=2.5e-09  Score=91.68  Aligned_cols=101  Identities=17%  Similarity=0.057  Sum_probs=62.9

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc-eeeecccee----------eeec----c--cccccceeecccc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY-FEITWASLR----------AVVE----P--SFAVRSVINHGDY   76 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~-~~~~~~~~~----------~~~~----~--~~~~~~~~~~~~~   76 (368)
                      +++||+|||||++|+++|..|+ .|.+|+|||++.. .+ .+....          ....    +  ....+.+....+.
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G-~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~   80 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVM-MPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEG   80 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTT-CCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCC-cccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHc
Confidence            4689999999999999999998 4999999999832 22 110000          0000    0  0000000011111


Q ss_pred             cCceeEEEeEEEEeec--c---EEEecCCeEEEecEEEEecCCCC
Q 017664           77 LSNVKIVVSTAVSITD--T---EVVTAGGQTFVYDYVVVATGHVE  116 (368)
Q Consensus        77 ~~~~~~~~~~~~~~~~--~---~v~~~~g~~~~~d~lvlAtG~~~  116 (368)
                      ..+++++...+..+..  .   .+.+.++..+++|+||+|+|..+
T Consensus        81 ~~gv~i~~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s  125 (232)
T 2cul_A           81 LRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFL  125 (232)
T ss_dssp             CTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred             CCCcEEEEeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCCh
Confidence            1367777666766653  2   36677888899999999999974

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.89  E-value=2.1e-08  Score=99.70  Aligned_cols=54  Identities=7%  Similarity=0.058  Sum_probs=45.9

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCc-EEecCEEEEccCCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGE-TIDTDCHFMCTGKA  235 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~-~i~~d~vi~a~G~~  235 (368)
                      ..+...+.+.+++.|++++++++|++++.+++  .+.+.+|+ ++.+|.||+|+|..
T Consensus       412 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~  468 (689)
T 3pvc_A          412 SDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHR  468 (689)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGG
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcc
Confidence            46778888889999999999999999987765  67788886 89999999999976

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.89  E-value=5.3e-10  Score=107.71  Aligned_cols=42  Identities=26%  Similarity=0.402  Sum_probs=35.9

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeec
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITW   54 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~   54 (368)
                      |++++||+|||||++||+||..|++ |++|+|+|+++..|+..
T Consensus         1 m~~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~   43 (520)
T 1s3e_A            1 MSNKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRT   43 (520)
T ss_dssp             --CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTC
T ss_pred             CCCCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCce
Confidence            3456899999999999999999984 99999999999887553

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.87  E-value=3.9e-08  Score=97.65  Aligned_cols=54  Identities=7%  Similarity=0.174  Sum_probs=46.8

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      ..+...+.+.+++.|++++++++|+++..+++  .|.+.+|.++.+|.||+|+|..
T Consensus       417 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~  472 (676)
T 3ps9_A          417 AELTRNVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQ  472 (676)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGG
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcc
Confidence            46778888889999999999999999987666  6777787789999999999976

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=98.87  E-value=2e-09  Score=88.48  Aligned_cols=101  Identities=15%  Similarity=0.095  Sum_probs=61.8

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecc--cc-cccceeeccccc--CceeEEEeEEEE
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEP--SF-AVRSVINHGDYL--SNVKIVVSTAVS   89 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~--~~~~~~~~~~~~   89 (368)
                      ++|++|||||++|+.+|..|+ .|.+|+|+|+++........+......  .. ..+......+.+  .+++++..++..
T Consensus         1 ~~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~~v~~   80 (180)
T 2ywl_A            1 MWDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPGVVKG   80 (180)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEECCCCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeCEEEE
Confidence            368999999999999999998 499999999987322110000000000  00 000000011111  256776666666


Q ss_pred             eecc----EEEecCCeEEEecEEEEecCCCCC
Q 017664           90 ITDT----EVVTAGGQTFVYDYVVVATGHVES  117 (368)
Q Consensus        90 ~~~~----~v~~~~g~~~~~d~lvlAtG~~~~  117 (368)
                      ++..    .+.+.++ .+++|.||+|+|..|.
T Consensus        81 i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~  111 (180)
T 2ywl_A           81 VRDMGGVFEVETEEG-VEKAERLLLCTHKDPT  111 (180)
T ss_dssp             EEECSSSEEEECSSC-EEEEEEEEECCTTCCH
T ss_pred             EEEcCCEEEEEECCC-EEEECEEEECCCCCCC
Confidence            6532    5667777 8999999999999973

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.82  E-value=3.2e-08  Score=92.13  Aligned_cols=53  Identities=17%  Similarity=0.149  Sum_probs=43.2

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCCC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMA  237 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~  237 (368)
                      .+.+.+.+.+++  ++++.+++|+.++.+++  .+.+.+|+++++|+||.|.|....
T Consensus       128 ~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~  182 (407)
T 3rp8_A          128 ELQREMLDYWGR--DSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSA  182 (407)
T ss_dssp             HHHHHHHHHHCG--GGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCCTTCS
T ss_pred             HHHHHHHHhCCc--CEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECCCcChH
Confidence            455666666666  89999999999987766  678889999999999999997643

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.81  E-value=5.6e-08  Score=90.21  Aligned_cols=51  Identities=8%  Similarity=-0.010  Sum_probs=40.2

Q ss_pred             hHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCC
Q 017664          184 ASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       184 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                      +.+.+.+.+  .|++++.+++|++++.+++  .+.+.+|+++++|+||.|.|...
T Consensus       101 l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S  153 (397)
T 2vou_A          101 IYGGLYELF--GPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGAS  153 (397)
T ss_dssp             HHHHHHHHH--CSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred             HHHHHHHhC--CCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcch
Confidence            334444443  4899999999999887655  67888998999999999999764

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.80  E-value=9.5e-09  Score=96.11  Aligned_cols=54  Identities=19%  Similarity=0.126  Sum_probs=43.6

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCCC----eEEcCCCc--EEecCEEEEccCCCC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISDG----LIETSSGE--TIDTDCHFMCTGKAM  236 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~----~v~~~~g~--~i~~d~vi~a~G~~p  236 (368)
                      .+...+.+.+++.|++++.+++|+.++.+++    .+.+.+|+  ++.+|.||.|+|...
T Consensus       107 ~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s  166 (421)
T 3nix_A          107 NFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGR  166 (421)
T ss_dssp             HHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGGC
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCch
Confidence            4556677777888999999999998887654    45668887  799999999999753

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.80  E-value=1.3e-08  Score=95.36  Aligned_cols=59  Identities=15%  Similarity=0.080  Sum_probs=47.2

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCCCCCchhh
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGKAMASSWL  241 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~~p~~~~~  241 (368)
                      ..+.+.+.+.+++.|++++++++|++|..+++   .|.++ |+++++|.||+|++......++
T Consensus       196 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~~-g~~~~ad~VV~a~~~~~~~~ll  257 (425)
T 3ka7_A          196 KGIIDALETVISANGGKIHTGQEVSKILIENGKAAGIIAD-DRIHDADLVISNLGHAATAVLC  257 (425)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEET-TEEEECSEEEECSCHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCEEEECCceeEEEEECCEEEEEEEC-CEEEECCEEEECCCHHHHHHhc
Confidence            46788888999999999999999999987766   25554 7789999999999865433333

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.78  E-value=1.3e-08  Score=99.12  Aligned_cols=54  Identities=22%  Similarity=0.256  Sum_probs=43.6

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcC-CC--cEEecCEEEEccCCCC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETS-SG--ETIDTDCHFMCTGKAM  236 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~-~g--~~i~~d~vi~a~G~~p  236 (368)
                      .+...+.+.+++.|++++.+++|+.+..+++   .|.+. +|  +++++|.||.|+|...
T Consensus       129 ~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S  188 (591)
T 3i3l_A          129 EFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVIDAGGSGG  188 (591)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEESEEEECCGGGC
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcCEEEECCCCcc
Confidence            4566777888889999999999999886533   56665 66  5899999999999764

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.76  E-value=6.5e-09  Score=97.61  Aligned_cols=97  Identities=24%  Similarity=0.285  Sum_probs=76.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc--cc---------CchhHHHHHHHHHcCCcEEEecceeee
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE--FV---------GSRASQIALDWLTSKKVEVILNQSVTL  207 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~--~~---------~~~~~~~~~~~l~~~gv~i~~~~~v~~  207 (368)
                      .|+|+|||+|+.|+.+|..|++..++.+|+++++++.+.-  .+         ..++...+.+.+++.||+++.+ +|+.
T Consensus         2 ~K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~-~v~~   80 (430)
T 3hyw_A            2 AKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINE-KAES   80 (430)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECS-CEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEe-EEEE
Confidence            3789999999999999999997767789999999876421  10         1111122345567789999876 6888


Q ss_pred             cccCCCeEEcCCCcEEecCEEEEccCCCC
Q 017664          208 NTISDGLIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       208 i~~~~~~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                      |+.++..|.+++|+++++|.+|+|||.++
T Consensus        81 Id~~~~~V~~~~g~~i~YD~LViAtG~~~  109 (430)
T 3hyw_A           81 IDPDANTVTTQSGKKIEYDYLVIATGPKL  109 (430)
T ss_dssp             EETTTTEEEETTCCEEECSEEEECCCCEE
T ss_pred             EECCCCEEEECCCCEEECCEEEEeCCCCc
Confidence            88887799999999999999999999864

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.76  E-value=3.2e-08  Score=93.32  Aligned_cols=55  Identities=18%  Similarity=0.250  Sum_probs=46.6

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCCCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                      ..+.+.+.+.+++.||+++++++|+.+..+++   .|.+.+|+++.+|.||+|+|..+
T Consensus       134 ~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~VVlAtGg~s  191 (447)
T 2i0z_A          134 QSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKS  191 (447)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred             HHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECCEEEECCCCCc
Confidence            46677888888999999999999998876554   57788888899999999999775

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.73  E-value=7.9e-08  Score=88.24  Aligned_cols=53  Identities=21%  Similarity=0.246  Sum_probs=44.4

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      ..+...+.+.+++.|++++.+++|++++.+++  .+.+.+| ++.+|.||+|+|..
T Consensus       149 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~a~~vV~a~G~~  203 (372)
T 2uzz_A          149 ELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADG-EYQAKKAIVCAGTW  203 (372)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-EEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEEECCC-eEEcCEEEEcCCcc
Confidence            35677788888999999999999999887655  6777777 49999999999965

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.72  E-value=3.2e-08  Score=89.92  Aligned_cols=43  Identities=19%  Similarity=0.212  Sum_probs=35.6

Q ss_pred             HHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCC
Q 017664          192 LTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGK  234 (368)
Q Consensus       192 l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~  234 (368)
                      .++.|++++++++|++++.+++  .+.+.+|+++.+|.||+|+..
T Consensus       119 ~~~~g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV~A~p~  163 (342)
T 3qj4_A          119 LKESGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVLTMPV  163 (342)
T ss_dssp             HHHHTCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEEECSCH
T ss_pred             HHhcCCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCH
Confidence            3344899999999999987665  677888887899999999873

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.71  E-value=5.1e-10  Score=109.68  Aligned_cols=59  Identities=10%  Similarity=0.090  Sum_probs=45.5

Q ss_pred             HcCCcEEEecceeeecccCCC-----eEEc---CCCc--EEecCEEEEccCCCCCchhhhccccccccC
Q 017664          193 TSKKVEVILNQSVTLNTISDG-----LIET---SSGE--TIDTDCHFMCTGKAMASSWLRETILKDSLD  251 (368)
Q Consensus       193 ~~~gv~i~~~~~v~~i~~~~~-----~v~~---~~g~--~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~  251 (368)
                      ++.|+++++++.|+++..+++     .|+.   .+|+  ++++|.||+|+|..+++.++..++++...+
T Consensus       271 ~~~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~~sgiG~~~~  339 (623)
T 3pl8_A          271 PEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGR  339 (623)
T ss_dssp             EEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHHTTTSSCCSS
T ss_pred             cCCCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHHhcCCCcccc
Confidence            345899999999999876532     3443   3454  788999999999999999998888766433

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.71  E-value=2.3e-07  Score=85.91  Aligned_cols=52  Identities=12%  Similarity=0.060  Sum_probs=42.9

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      .+...+.+.+++.|++++++++|++++.+++  .+.+.+| ++.+|.||+|+|..
T Consensus       154 ~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~~g-~i~a~~VV~A~G~~  207 (397)
T 2oln_A          154 GTLAALFTLAQAAGATLRAGETVTELVPDADGVSVTTDRG-TYRAGKVVLACGPY  207 (397)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEESSC-EEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHcCCEEECCCEEEEEEEcCCeEEEEECCC-EEEcCEEEEcCCcC
Confidence            4567778888899999999999999877655  5566665 79999999999975

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.71  E-value=7.5e-08  Score=88.90  Aligned_cols=99  Identities=19%  Similarity=0.270  Sum_probs=78.5

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---cc---------CchhHHHHHHHHHcCCcEEEeccee
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE---FV---------GSRASQIALDWLTSKKVEVILNQSV  205 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~---~~---------~~~~~~~~~~~l~~~gv~i~~~~~v  205 (368)
                      +.-+|+|||+|+.|+.+|..|.  ..+.+|+++++.+.+..   .+         ..++.....+.+++.||+++++++|
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~--~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V   85 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAAL--GKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFA   85 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHT--TTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCE
T ss_pred             CCCCEEEEcCcHHHHHHHHHHh--CCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEE
Confidence            3568999999999999999994  56889999998875321   10         1122223456778899999999999


Q ss_pred             eecccCCCeEEcCCCcEEecCEEEEccCCCCCc
Q 017664          206 TLNTISDGLIETSSGETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       206 ~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~  238 (368)
                      +.+..++..+.+.+|+++.+|.+|+|||.+|..
T Consensus        86 ~~id~~~~~v~~~~g~~~~yd~lvlAtG~~p~~  118 (385)
T 3klj_A           86 TSIDPNNKLVTLKSGEKIKYEKLIIASGSIANK  118 (385)
T ss_dssp             EEEETTTTEEEETTSCEEECSEEEECCCEEECC
T ss_pred             EEEECCCCEEEECCCCEEECCEEEEecCCCcCC
Confidence            999887779999999999999999999987653

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.71  E-value=1.4e-07  Score=87.50  Aligned_cols=55  Identities=11%  Similarity=0.206  Sum_probs=45.9

Q ss_pred             hhHHHHHHHHHcC-CcEEEecceeeecccCCC----eEEcCCCcEEecCEEEEccCCCCC
Q 017664          183 RASQIALDWLTSK-KVEVILNQSVTLNTISDG----LIETSSGETIDTDCHFMCTGKAMA  237 (368)
Q Consensus       183 ~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~----~v~~~~g~~i~~d~vi~a~G~~p~  237 (368)
                      .+.+.+.+.+++. |++++.+++|+.++.+++    .+.+.+|+++++|.||.|+|....
T Consensus       108 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG~~s~  167 (399)
T 2x3n_A          108 SLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIASY  167 (399)
T ss_dssp             HHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCCTTCH
T ss_pred             HHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCCCChH
Confidence            5667788888887 999999999999877654    466788889999999999998753

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.70  E-value=3e-08  Score=92.12  Aligned_cols=100  Identities=20%  Similarity=0.288  Sum_probs=76.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc--c--------cCchhHHHHHHHHHcCCcEEEecceeeec
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE--F--------VGSRASQIALDWLTSKKVEVILNQSVTLN  208 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~--~--------~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  208 (368)
                      +|||+|||+|+.|+.+|..|++..++.+|+++++++.+..  .        .+.+....-.+.+.++||+++.+ .++.|
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~-~v~~i   80 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHD-SALGI   80 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECS-CEEEE
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEe-EEEEE
Confidence            6899999999999999999987666789999998875321  0        11111111124556789999865 67888


Q ss_pred             ccCCCeEEcCCCcEEecCEEEEccCCCCCch
Q 017664          209 TISDGLIETSSGETIDTDCHFMCTGKAMASS  239 (368)
Q Consensus       209 ~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  239 (368)
                      +.++..+.+.+|+++++|.+|+|+|.+++.+
T Consensus        81 d~~~~~v~~~~g~~i~yd~LviAtG~~~~~~  111 (401)
T 3vrd_B           81 DPDKKLVKTAGGAEFAYDRCVVAPGIDLLYD  111 (401)
T ss_dssp             ETTTTEEEETTSCEEECSEEEECCCEEECGG
T ss_pred             EccCcEEEecccceeecceeeeccCCccccC
Confidence            8877789999999999999999999887654

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.62  E-value=4.5e-08  Score=93.53  Aligned_cols=133  Identities=17%  Similarity=0.200  Sum_probs=93.1

Q ss_pred             EecEEEEecCCCCCCCCchHHHHHH---------HHHH---------HHH--HhcCCeEEEEcCchhHHHHHHHHhhhCC
Q 017664          104 VYDYVVVATGHVESVPKSRTERLSQ---------YEKD---------FEK--VKSANSVLIVGGGPTGVELAGEIAVDFP  163 (368)
Q Consensus       104 ~~d~lvlAtG~~~~~p~~~~~~~~~---------~~~~---------~~~--~~~~~~v~VvG~g~~~~e~a~~l~~~~~  163 (368)
                      .||.+++++|.+|..|++....+..         ....         ...  .....+|+|||+|++|+.+|..|.+  .
T Consensus        37 ~~~~l~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~aA~~La~--~  114 (497)
T 2bry_A           37 SFQGLCRALGVESGGGLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAAVELAL--L  114 (497)
T ss_dssp             HHHHHHHHHTCCTTCHHHHHHHHHHTCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCSHHHHHHHHHHHH--T
T ss_pred             HHHHHHHHhCCCCCCCcEeehhhHHHHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECccHHHHHHHHHHHH--C
Confidence            3678999999998776543322211         1111         000  1235789999999999999999986  4


Q ss_pred             CCeEEEEecCcccccc-----c----------------------------CchhHHHHHHHHHcCCcEEEecceeeeccc
Q 017664          164 DKKVILVHRGPKLLEF-----V----------------------------GSRASQIALDWLTSKKVEVILNQSVTLNTI  210 (368)
Q Consensus       164 ~~~v~~i~~~~~~l~~-----~----------------------------~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~  210 (368)
                      +.+|+++++.+.+...     .                            ...+...+.+.+++.|+++++++.|.+++.
T Consensus       115 G~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~  194 (497)
T 2bry_A          115 GARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQP  194 (497)
T ss_dssp             TCEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEC
T ss_pred             CCeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEE
Confidence            8899999987643110     0                            034556677788889999999999998876


Q ss_pred             C---C-C-eEEc--C-CC--cEEecCEEEEccCCCCCc
Q 017664          211 S---D-G-LIET--S-SG--ETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       211 ~---~-~-~v~~--~-~g--~~i~~d~vi~a~G~~p~~  238 (368)
                      +   + . .+.+  . +|  +++++|.||.|+|..+..
T Consensus       195 ~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~  232 (497)
T 2bry_A          195 PPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVP  232 (497)
T ss_dssp             CCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCC
T ss_pred             ecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCccc
Confidence            4   1 2 5555  4 66  579999999999987643

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.62  E-value=2.5e-08  Score=87.07  Aligned_cols=38  Identities=21%  Similarity=0.214  Sum_probs=34.0

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeee
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEIT   53 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~   53 (368)
                      .+||+|||||||||+||..|+ +|++|+|+|+++..|+.
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~   40 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGR   40 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCc
Confidence            479999999999999999998 49999999999877643

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.61  E-value=5.2e-07  Score=85.01  Aligned_cols=52  Identities=15%  Similarity=0.112  Sum_probs=43.9

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeeccc---------------CCC---eEEcCCCcEE--ecCEEEEccCCC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTI---------------SDG---LIETSSGETI--DTDCHFMCTGKA  235 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~---------------~~~---~v~~~~g~~i--~~d~vi~a~G~~  235 (368)
                      .+...+.+.+++.|++++++++|++++.               +++   .+.+.+| ++  .+|.||+|+|..
T Consensus       182 ~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~  253 (448)
T 3axb_A          182 KVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVW  253 (448)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcC
Confidence            6778888999999999999999998876               443   4677777 58  999999999965

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.60  E-value=2e-07  Score=94.74  Aligned_cols=53  Identities=28%  Similarity=0.272  Sum_probs=45.1

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      ..+...+.+.+++.|++++++++|++++.+++   .+.+.+| ++.+|.||+|+|..
T Consensus       151 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~  206 (830)
T 1pj5_A          151 ARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFW  206 (830)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGG
T ss_pred             HHHHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccc
Confidence            36778888899999999999999999987655   4677777 79999999999976

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.60  E-value=6.1e-08  Score=91.16  Aligned_cols=100  Identities=20%  Similarity=0.208  Sum_probs=77.5

Q ss_pred             CeEEEEcCchhHHHHHHHHhhh-CCCCeEEEEecCcccc--cc---------cCchhHHHHHHHHHcCCcEEEecceeee
Q 017664          140 NSVLIVGGGPTGVELAGEIAVD-FPDKKVILVHRGPKLL--EF---------VGSRASQIALDWLTSKKVEVILNQSVTL  207 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~-~~~~~v~~i~~~~~~l--~~---------~~~~~~~~~~~~l~~~gv~i~~~~~v~~  207 (368)
                      ++|+|||+|+.|+.+|..|.++ ..+.+|+++++++.+.  +.         ...++...+.+.+++.||+++. ..++.
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~   83 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIA-QSAEQ   83 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEEC-SCEEE
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEE-eEEEE
Confidence            6899999999999999999862 2578999999987642  11         0111222245778889999985 58888


Q ss_pred             cccCCCeEEcCCCcEEecCEEEEccCCCCCchh
Q 017664          208 NTISDGLIETSSGETIDTDCHFMCTGKAMASSW  240 (368)
Q Consensus       208 i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~  240 (368)
                      ++.++..+.+++|+++.+|.+|+|+|.+|+.+.
T Consensus        84 id~~~~~V~~~~g~~i~~d~lviAtG~~~~~~~  116 (437)
T 3sx6_A           84 IDAEAQNITLADGNTVHYDYLMIATGPKLAFEN  116 (437)
T ss_dssp             EETTTTEEEETTSCEEECSEEEECCCCEECGGG
T ss_pred             EEcCCCEEEECCCCEEECCEEEECCCCCcCccc
Confidence            887777899999999999999999999887543

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.58  E-value=1.7e-07  Score=88.47  Aligned_cols=54  Identities=19%  Similarity=0.099  Sum_probs=42.2

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCCCe---EEcC---CCc--EEecCEEEEccCCCC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISDGL---IETS---SGE--TIDTDCHFMCTGKAM  236 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~---v~~~---~g~--~i~~d~vi~a~G~~p  236 (368)
                      .+.+.+.+.+++.|++++.+++|+.+..+++.   +.+.   +|+  ++++|.||.|+|...
T Consensus       101 ~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s  162 (453)
T 3atr_A          101 LYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSR  162 (453)
T ss_dssp             HHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGGC
T ss_pred             HHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCch
Confidence            45667777888899999999999988776552   4443   675  799999999999643

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.58  E-value=7.7e-08  Score=92.36  Aligned_cols=54  Identities=15%  Similarity=0.081  Sum_probs=43.1

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCCC-----eEEcCCCc--EEecCEEEEccCCCC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISDG-----LIETSSGE--TIDTDCHFMCTGKAM  236 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-----~v~~~~g~--~i~~d~vi~a~G~~p  236 (368)
                      .+...+.+.+++.|++++.+++|+.+..+++     .+...+|+  ++++|.||.|+|...
T Consensus       112 ~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S  172 (512)
T 3e1t_A          112 RFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRT  172 (512)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEEEECCCcch
Confidence            4566777888889999999999999887665     23445674  899999999999853

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.58  E-value=1.7e-07  Score=82.87  Aligned_cols=37  Identities=30%  Similarity=0.447  Sum_probs=32.9

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-c-CCcEEEEcCCCcee
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-S-FADVVLIDEKEYFE   51 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~-g~~v~lie~~~~~~   51 (368)
                      .++||+|||||++|+++|..|+ + |.+|+|+|+++..+
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~g   76 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPG   76 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCC
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCC
Confidence            4579999999999999999997 4 89999999998654

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.57  E-value=2.7e-07  Score=89.38  Aligned_cols=53  Identities=21%  Similarity=0.280  Sum_probs=43.8

Q ss_pred             hhHHHHHHHHHcC-CcEEEecceeeecccCC-C---eEEcCCCcEEecCEEEEccCCCC
Q 017664          183 RASQIALDWLTSK-KVEVILNQSVTLNTISD-G---LIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       183 ~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~-~---~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                      .+...+.+.+++. |++++.+ +|+.+..++ +   .+.+.+|+++++|.||.|+|...
T Consensus       195 ~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S  252 (550)
T 2e4g_A          195 LVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRG  252 (550)
T ss_dssp             HHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGC
T ss_pred             HHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCch
Confidence            5677788888888 9999999 899887643 3   57788888899999999999754

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.56  E-value=7.2e-08  Score=89.83  Aligned_cols=99  Identities=12%  Similarity=0.062  Sum_probs=77.1

Q ss_pred             CeEEEEcCchhHHHHHHHHhh-hCCCCeEEEEecCccccc-----------ccCchhHHHHHHHHHcCCcEEEecceeee
Q 017664          140 NSVLIVGGGPTGVELAGEIAV-DFPDKKVILVHRGPKLLE-----------FVGSRASQIALDWLTSKKVEVILNQSVTL  207 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~-~~~~~~v~~i~~~~~~l~-----------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~  207 (368)
                      ++|+|||+|++|+.+|..|.+ ...+.+|+++++++.+..           ....++...+.+.+++.|++++.+ .++.
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~   80 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEG-TVEK   80 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEEC-EEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEe-eEEE
Confidence            579999999999999999986 335789999998875421           112244455677888899999987 8888


Q ss_pred             cccCCCeEEcCCCc----EEecCEEEEccCCCCCch
Q 017664          208 NTISDGLIETSSGE----TIDTDCHFMCTGKAMASS  239 (368)
Q Consensus       208 i~~~~~~v~~~~g~----~i~~d~vi~a~G~~p~~~  239 (368)
                      ++.++..+.+.+++    ++++|.+|+|+|.+|+.+
T Consensus        81 i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~~  116 (409)
T 3h8l_A           81 IDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATE  116 (409)
T ss_dssp             EETTTTEEEEECTTSCEEEEECSEEEECCCCEECGG
T ss_pred             EeCCCCEEEEccCCcccceeeCCEEEECCCCCcCcc
Confidence            87776677776665    499999999999987654

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.56  E-value=3.7e-07  Score=85.06  Aligned_cols=98  Identities=20%  Similarity=0.362  Sum_probs=76.3

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhH-------------HHHHHHHHcCCcEEEecceee
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRAS-------------QIALDWLTSKKVEVILNQSVT  206 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~-------------~~~~~~l~~~gv~i~~~~~v~  206 (368)
                      ++++|||+|+.|+.+|..|.++....+|+++++.+.+. ...+.+.             ....+.+++.|++++.++++.
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~-y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~v~   81 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLP-YDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVT   81 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSS-BCSGGGGTHHHHTSSSSCCBSSCTTHHHHTTCEEEESCCEE
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCC-cCCccccHHHhCCCCCHHHhcCCHHHHHHCCCEEEeCCEEE
Confidence            58999999999999999999754445699999876532 1111111             122356778899999999999


Q ss_pred             ecccCCCeEEcCCCcEEecCEEEEccCCCCCc
Q 017664          207 LNTISDGLIETSSGETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       207 ~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~  238 (368)
                      .+..+...+.+.+|+++.+|.+|+|||..|..
T Consensus        82 ~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~  113 (410)
T 3ef6_A           82 ALDVQTRTISLDDGTTLSADAIVIATGSRART  113 (410)
T ss_dssp             EEETTTTEEEETTSCEEECSEEEECCCEEECC
T ss_pred             EEECCCCEEEECCCCEEECCEEEEccCCcccC
Confidence            98877778999999999999999999987654

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.53  E-value=6.2e-07  Score=87.13  Aligned_cols=55  Identities=13%  Similarity=0.048  Sum_probs=43.5

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCC-C---eEEc--CCCc--EEecCEEEEccCCCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISD-G---LIET--SSGE--TIDTDCHFMCTGKAM  236 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~---~v~~--~~g~--~i~~d~vi~a~G~~p  236 (368)
                      ..+...+.+.+++.||+++++++++++..++ +   .+++  .+|+  ++.+|.||+|+|-..
T Consensus       250 ~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s  312 (566)
T 1qo8_A          250 PEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYG  312 (566)
T ss_dssp             HHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCcc
Confidence            3566778888899999999999999987666 5   3444  3675  689999999999654

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.52  E-value=1e-06  Score=85.66  Aligned_cols=54  Identities=17%  Similarity=0.169  Sum_probs=43.1

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCC-C---eEEcC--CCc--EEecCEEEEccCCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISD-G---LIETS--SGE--TIDTDCHFMCTGKA  235 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~---~v~~~--~g~--~i~~d~vi~a~G~~  235 (368)
                      ..+...+.+.+++.||+++++++++++..++ +   .++..  +|+  ++.+|.||+|+|..
T Consensus       255 ~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~  316 (571)
T 1y0p_A          255 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGF  316 (571)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCc
Confidence            4567788888999999999999999987665 4   24433  675  68999999999964

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.52  E-value=3.6e-07  Score=87.36  Aligned_cols=53  Identities=17%  Similarity=0.188  Sum_probs=43.2

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCc---EEecCEEEEccCCC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGE---TIDTDCHFMCTGKA  235 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~---~i~~d~vi~a~G~~  235 (368)
                      .+.+.+.+.+++.|++++.+++++.++.+++  .+.+.+++   ++++|+||.|.|..
T Consensus       107 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~  164 (500)
T 2qa1_A          107 VTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGR  164 (500)
T ss_dssp             HHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTT
T ss_pred             HHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcc
Confidence            5567777888888999999999999987665  55566654   79999999999975

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.51  E-value=3.6e-07  Score=81.87  Aligned_cols=96  Identities=19%  Similarity=0.140  Sum_probs=75.2

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC--cccc--------ccc----CchhHHHHHHHHHcCCcEEEeccee
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRG--PKLL--------EFV----GSRASQIALDWLTSKKVEVILNQSV  205 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~--~~~l--------~~~----~~~~~~~~~~~l~~~gv~i~~~~~v  205 (368)
                      .+|+|||+|+.|+.+|..|.+  .+.+|+++++.  ....        +.+    ..++.+.+.+.+++.|++++. +.+
T Consensus        16 ~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v   92 (323)
T 3f8d_A           16 FDVIIVGLGPAAYGAALYSAR--YMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLL-DIV   92 (323)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEE-SCE
T ss_pred             cCEEEECccHHHHHHHHHHHH--CCCcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEE-EEE
Confidence            589999999999999999986  37899999986  1110        111    235666777888899999999 888


Q ss_pred             eecccCCC--eEEcCCCcEEecCEEEEccCCCCCc
Q 017664          206 TLNTISDG--LIETSSGETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       206 ~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~  238 (368)
                      ..+..+++  .+.+.+|+++.+|.+|+|+|..|..
T Consensus        93 ~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~  127 (323)
T 3f8d_A           93 EKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRK  127 (323)
T ss_dssp             EEEEEC--CEEEEESSSCEEEEEEEEECCCCEECC
T ss_pred             EEEEecCCEEEEEECCCCEEEcCEEEECcCCCCcc
Confidence            88877655  6788888899999999999988654

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.51  E-value=2.1e-07  Score=83.84  Aligned_cols=95  Identities=16%  Similarity=0.142  Sum_probs=77.0

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc---------------ccc----CchhHHHHHHHHHcCCcEEE
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL---------------EFV----GSRASQIALDWLTSKKVEVI  200 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l---------------~~~----~~~~~~~~~~~l~~~gv~i~  200 (368)
                      .+|+|||+|+.|+.+|..|.+  .+.+|+++++.+.+.               +.+    ..++...+.+.+++.|++++
T Consensus         8 ~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (332)
T 3lzw_A            8 YDITIIGGGPVGLFTAFYGGM--RQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTIC   85 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHH--CCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEE
Confidence            579999999999999999986  478999999876432               111    24566777788888999999


Q ss_pred             ecceeeecccCCC---eEEcCCCcEEecCEEEEccCC---CCC
Q 017664          201 LNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGK---AMA  237 (368)
Q Consensus       201 ~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~---~p~  237 (368)
                      +++.|..+..+++   .+.+.+|+ +.+|.+|+|+|.   .|.
T Consensus        86 ~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~  127 (332)
T 3lzw_A           86 LEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGNGAFKPR  127 (332)
T ss_dssp             CSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTSCCEEC
T ss_pred             ccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCCcCCCC
Confidence            9999999887654   77888886 999999999998   554

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.51  E-value=2.5e-07  Score=85.81  Aligned_cols=36  Identities=31%  Similarity=0.425  Sum_probs=32.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCc
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEY   49 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~   49 (368)
                      ++++||+|||||++|+++|..|++ |.+|+|+|+.+.
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   60 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDND   60 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSS
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            456899999999999999999985 999999999864

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.51  E-value=4e-07  Score=85.36  Aligned_cols=100  Identities=20%  Similarity=0.203  Sum_probs=75.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---ccCc----------hhHHHHHHHHHcCCcEEEeccee
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE---FVGS----------RASQIALDWLTSKKVEVILNQSV  205 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~---~~~~----------~~~~~~~~~l~~~gv~i~~~~~v  205 (368)
                      ..+++|||+|+.|+.+|..|.+.....+|+++++.+.+..   ....          .+.....+.+++.|++++.++.|
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v   83 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV   83 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCEE
Confidence            4689999999999999999987433348999998754210   0010          11112246678899999999999


Q ss_pred             eecccCCCeEEcCCCcEEecCEEEEccCCCCCc
Q 017664          206 TLNTISDGLIETSSGETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       206 ~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~  238 (368)
                      ..+..++..+.+.+|+++++|.+|+|||.+|..
T Consensus        84 ~~i~~~~~~v~~~~g~~~~~d~lviAtG~~p~~  116 (431)
T 1q1r_A           84 TAINRDRQQVILSDGRALDYDRLVLATGGRPRP  116 (431)
T ss_dssp             EEEETTTTEEEETTSCEEECSEEEECCCEEECC
T ss_pred             EEEECCCCEEEECCCCEEECCEEEEcCCCCccC
Confidence            988876668888889899999999999988754

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.51  E-value=6.4e-07  Score=85.56  Aligned_cols=53  Identities=15%  Similarity=0.321  Sum_probs=43.4

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCc---EEecCEEEEccCCC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGE---TIDTDCHFMCTGKA  235 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~---~i~~d~vi~a~G~~  235 (368)
                      .+...+.+.+++.|++++.+++++.++.+++  .+.+.+++   ++++|+||.|.|..
T Consensus       108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~  165 (499)
T 2qa2_A          108 TTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGR  165 (499)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTT
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCcc
Confidence            5567777888888999999999999987665  56666664   79999999999975

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.50  E-value=1.2e-07  Score=90.47  Aligned_cols=39  Identities=28%  Similarity=0.378  Sum_probs=34.4

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCcee
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFE   51 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~   51 (368)
                      ....+||+|||||++|+++|..|+ .|.+|+|||+++.++
T Consensus        89 ~~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g  128 (497)
T 2bry_A           89 ACTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFS  128 (497)
T ss_dssp             TTTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCC
T ss_pred             ccCCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccC
Confidence            345789999999999999999998 599999999998764

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.49  E-value=4.7e-07  Score=82.22  Aligned_cols=93  Identities=10%  Similarity=0.043  Sum_probs=75.7

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc---------------------cccC-----------chhHHH
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL---------------------EFVG-----------SRASQI  187 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l---------------------~~~~-----------~~~~~~  187 (368)
                      .+++|||+|+.|+.+|..|.+  .+.+|+++++.+.+.                     +.+.           ..+.+.
T Consensus         4 ~~vvIIG~G~aGl~~A~~l~~--~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (357)
T 4a9w_A            4 VDVVVIGGGQSGLSAGYFLRR--SGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAY   81 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--SSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHH
Confidence            479999999999999999986  478999999876421                     1000           356677


Q ss_pred             HHHHHHcCCcEEEecceeeecccCCC--e-EEcCCCcEEecCEEEEccCCC
Q 017664          188 ALDWLTSKKVEVILNQSVTLNTISDG--L-IETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       188 ~~~~l~~~gv~i~~~~~v~~i~~~~~--~-v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      +.+.+++.|++++.+++|..++.+++  . +.+++| ++++|.+|+|+|..
T Consensus        82 l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~  131 (357)
T 4a9w_A           82 LAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTW  131 (357)
T ss_dssp             HHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSG
T ss_pred             HHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCC
Confidence            78888899999999999999887766  4 888888 89999999999953

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.47  E-value=2.1e-07  Score=89.28  Aligned_cols=54  Identities=13%  Similarity=0.073  Sum_probs=42.0

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccC-CC---eEEcC-CCc--EEecC-EEEEccCCCC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTIS-DG---LIETS-SGE--TIDTD-CHFMCTGKAM  236 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~-~~---~v~~~-~g~--~i~~d-~vi~a~G~~p  236 (368)
                      .+...+.+.+++.|++++++++++++..+ ++   .|+.. +++  ++.+| .||+|+|-..
T Consensus       203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~  264 (510)
T 4at0_A          203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFA  264 (510)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence            67788888999999999999999998876 44   34433 332  68896 9999999653

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.46  E-value=1.9e-07  Score=90.60  Aligned_cols=53  Identities=15%  Similarity=0.176  Sum_probs=43.9

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEc--CCC-cEEecCEEEEccCCC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISDG--LIET--SSG-ETIDTDCHFMCTGKA  235 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~--~~g-~~i~~d~vi~a~G~~  235 (368)
                      .+...+.+.+++.|++++.+++|+.++.+++  .+.+  .+| +++.+|+||.|.|..
T Consensus       149 ~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~~  206 (570)
T 3fmw_A          149 RTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGGR  206 (570)
T ss_dssp             HHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCSS
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCCC
Confidence            5567777888888999999999999987765  5555  678 789999999999965

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.44  E-value=4e-07  Score=84.63  Aligned_cols=98  Identities=16%  Similarity=0.195  Sum_probs=75.9

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---cc----------CchhHHHHHHHHHcCCcEEEecceee
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE---FV----------GSRASQIALDWLTSKKVEVILNQSVT  206 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~---~~----------~~~~~~~~~~~l~~~gv~i~~~~~v~  206 (368)
                      ++++|||+|+.|+.+|..|+++....+|+++++.+....   .+          ...+.....+.+++.+++++. +++.
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~-~~v~   80 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELIS-DRMV   80 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEEC-CCEE
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEE-EEEE
Confidence            689999999999999999997544448999998763210   00          112223345677889999999 8999


Q ss_pred             ecccCCCeEEcCCCcEEecCEEEEccCCCCCc
Q 017664          207 LNTISDGLIETSSGETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       207 ~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~  238 (368)
                      .+..++..+.+.+|+++.+|.+|+|||.+|..
T Consensus        81 ~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~  112 (404)
T 3fg2_P           81 SIDREGRKLLLASGTAIEYGHLVLATGARNRM  112 (404)
T ss_dssp             EEETTTTEEEESSSCEEECSEEEECCCEEECC
T ss_pred             EEECCCCEEEECCCCEEECCEEEEeeCCCccC
Confidence            88877778999999999999999999987653

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.44  E-value=3.4e-07  Score=88.68  Aligned_cols=54  Identities=11%  Similarity=0.015  Sum_probs=43.2

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCC---C--cEEecCEEEEccCCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSS---G--ETIDTDCHFMCTGKA  235 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~---g--~~i~~d~vi~a~G~~  235 (368)
                      ..+...+.+.+++.|++++++++|+.+..+++   .+.+.+   |  .++.+|.||.|+|..
T Consensus       170 ~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~  231 (561)
T 3da1_A          170 ARLTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPW  231 (561)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcc
Confidence            46677788888999999999999999887665   355432   3  479999999999965

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.44  E-value=8.4e-07  Score=82.57  Aligned_cols=99  Identities=17%  Similarity=0.179  Sum_probs=74.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHH----------HHHHcCCcEEEecceeeec
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIAL----------DWLTSKKVEVILNQSVTLN  208 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~----------~~l~~~gv~i~~~~~v~~i  208 (368)
                      ..+++|||+|+.|+.+|..|.+.....+|+++++.+.+. ...+.+...+.          +.+++.|++++.++.+..+
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i   85 (408)
T 2gqw_A            7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERP-YDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSF   85 (408)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCC-BCSGGGGTHHHHHCCGGGSBCCCTTSCSCEEEETCCEEEE
T ss_pred             CCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCc-ccCCCCCHHHhCCCchhhhhHHHHHHCCCEEEcCCEEEEE
Confidence            468999999999999999999764445799999876532 11111111111          1456789999999999988


Q ss_pred             ccCCCeEEcCCCcEEecCEEEEccCCCCCc
Q 017664          209 TISDGLIETSSGETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       209 ~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~  238 (368)
                      ..++..+.+.+|+++++|.+|+|||.+|..
T Consensus        86 ~~~~~~v~~~~g~~~~~d~lviAtG~~~~~  115 (408)
T 2gqw_A           86 DPQAHTVALSDGRTLPYGTLVLATGAAPRA  115 (408)
T ss_dssp             ETTTTEEEETTSCEEECSEEEECCCEEECC
T ss_pred             ECCCCEEEECCCCEEECCEEEECCCCCCCC
Confidence            876668888889899999999999987654

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.44  E-value=4.8e-07  Score=84.40  Aligned_cols=100  Identities=20%  Similarity=0.220  Sum_probs=77.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---c----------cCchhHHHHHHHHHcCCcEEEeccee
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE---F----------VGSRASQIALDWLTSKKVEVILNQSV  205 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~---~----------~~~~~~~~~~~~l~~~gv~i~~~~~v  205 (368)
                      ..+++|||+|+.|+.+|..|+++....+|+++++.+.+..   .          ....+.....+.+++.|++++.++.+
T Consensus         9 ~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v   88 (415)
T 3lxd_A            9 RADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQFWEDKAVEMKLGAEV   88 (415)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBSSCHHHHHHTTEEEEETCCE
T ss_pred             CCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhccCCHHHHHHCCcEEEeCCEE
Confidence            4689999999999999999997544446999998764211   0          01122223456778899999999999


Q ss_pred             eecccCCCeEEcCCCcEEecCEEEEccCCCCCc
Q 017664          206 TLNTISDGLIETSSGETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       206 ~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~  238 (368)
                      ..+..++..+.+.+|+++.+|.+|+|||..|..
T Consensus        89 ~~id~~~~~v~~~~g~~~~~d~lvlAtG~~~~~  121 (415)
T 3lxd_A           89 VSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRR  121 (415)
T ss_dssp             EEEETTTTEEEETTSCEEEEEEEEECCCEECCC
T ss_pred             EEEECCCCEEEECCCCEEEeeEEEEccCCccCC
Confidence            988877778999999999999999999987654

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.44  E-value=2.9e-07  Score=88.84  Aligned_cols=54  Identities=7%  Similarity=-0.007  Sum_probs=43.4

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCCC------eEEcCCC---cEEecCEEEEccCCCC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISDG------LIETSSG---ETIDTDCHFMCTGKAM  236 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~------~v~~~~g---~~i~~d~vi~a~G~~p  236 (368)
                      .+...+.+.+++.|++++++++++.++.+++      .+.+.++   .++.+|+||.|.|...
T Consensus       121 ~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~S  183 (535)
T 3ihg_A          121 KLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGADGNRS  183 (535)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCCCeEEEEeCEEEECCCCcc
Confidence            5667788888889999999999999876543      4555555   6899999999999753

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.43  E-value=4.5e-07  Score=85.51  Aligned_cols=100  Identities=16%  Similarity=0.240  Sum_probs=72.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc------ccc------CchhHHHHHHHH-HcCCcEEEeccee
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL------EFV------GSRASQIALDWL-TSKKVEVILNQSV  205 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l------~~~------~~~~~~~~~~~l-~~~gv~i~~~~~v  205 (368)
                      .++++|||+|+.|+.+|..|++..++.+|+++++.+.+.      +..      ...+.....+.+ ++.|++++.++.+
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~v   82 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEV   82 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------CTHHHHTTCEEETTCEE
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCEE
Confidence            468999999999999999999866688999999887431      110      111112222333 6789999999999


Q ss_pred             eecccCCCeEEcCCC-cEEecCEEEEccCCCCCc
Q 017664          206 TLNTISDGLIETSSG-ETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       206 ~~i~~~~~~v~~~~g-~~i~~d~vi~a~G~~p~~  238 (368)
                      ..+..++..+.+.++ .++.+|.+|+|||.+|..
T Consensus        83 ~~i~~~~~~v~~~~g~~~~~~d~lviAtG~~p~~  116 (449)
T 3kd9_A           83 IEVDTGYVRVRENGGEKSYEWDYLVFANGASPQV  116 (449)
T ss_dssp             EEECSSEEEEECSSSEEEEECSEEEECCCEEECC
T ss_pred             EEEecCCCEEEECCceEEEEcCEEEECCCCCCCC
Confidence            888765557778777 489999999999987754

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.40  E-value=4.3e-07  Score=83.27  Aligned_cols=97  Identities=24%  Similarity=0.427  Sum_probs=72.4

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc-----------ccC-chhHHHHHHHHHcCCcEEEeccee
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE-----------FVG-SRASQIALDWLTSKKVEVILNQSV  205 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~-----------~~~-~~~~~~~~~~l~~~gv~i~~~~~v  205 (368)
                      .+.+++|||+|+.|+.+|..+++  .+ +|+++++++....           ..+ .++.....+.+++.|++++.++.+
T Consensus         7 ~~~~vvIIGgG~AGl~aA~~l~~--~g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v   83 (367)
T 1xhc_A            7 HGSKVVIVGNGPGGFELAKQLSQ--TY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEA   83 (367)
T ss_dssp             --CEEEEECCSHHHHHHHHHHTT--TS-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCE
T ss_pred             CCCcEEEECCcHHHHHHHHHHhh--cC-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhCCcEEEECCEE
Confidence            47789999999999999999975  35 9999998764211           001 112222346677889999999998


Q ss_pred             eecccCCCeEEcCCCcEEecCEEEEccCCCCCc
Q 017664          206 TLNTISDGLIETSSGETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       206 ~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~  238 (368)
                      ..+..+...+. .+|+++++|.+|+|||.+|..
T Consensus        84 ~~id~~~~~V~-~~g~~~~~d~lViATGs~p~~  115 (367)
T 1xhc_A           84 KLIDRGRKVVI-TEKGEVPYDTLVLATGARARE  115 (367)
T ss_dssp             EEEETTTTEEE-ESSCEEECSEEEECCCEEECC
T ss_pred             EEEECCCCEEE-ECCcEEECCEEEECCCCCCCC
Confidence            88876655676 677889999999999988764

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.39  E-value=8.1e-07  Score=80.10  Aligned_cols=98  Identities=24%  Similarity=0.223  Sum_probs=75.8

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc----cc------------cccc-----CchhHHHHHHHHHcCC
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP----KL------------LEFV-----GSRASQIALDWLTSKK  196 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~----~~------------l~~~-----~~~~~~~~~~~l~~~g  196 (368)
                      ..++|+|||+|+.|+.+|..|.+  .+.+|+++++.+    ..            .+.+     ..++...+.+.+++.|
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~--~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   98 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLAR--AEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFG   98 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH--TTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH--CCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcC
Confidence            35789999999999999999996  378999999843    11            1111     2356677888889999


Q ss_pred             cEEEecceeeecccCCC--eEEc---CCCcEEecCEEEEccCCCCCc
Q 017664          197 VEVILNQSVTLNTISDG--LIET---SSGETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       197 v~i~~~~~v~~i~~~~~--~v~~---~~g~~i~~d~vi~a~G~~p~~  238 (368)
                      ++++.++ +..+..+++  .+.+   .++.++.+|.+|+|+|..|..
T Consensus        99 v~i~~~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~  144 (338)
T 3itj_A           99 TEIITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKR  144 (338)
T ss_dssp             CEEECSC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEECC
T ss_pred             CEEEEeE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcCC
Confidence            9999988 888877665  3444   466789999999999987654

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.39  E-value=1.4e-06  Score=83.22  Aligned_cols=54  Identities=19%  Similarity=0.220  Sum_probs=43.8

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEc---CCCc--EEecCEEEEccCCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIET---SSGE--TIDTDCHFMCTGKA  235 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~---~~g~--~i~~d~vi~a~G~~  235 (368)
                      ..+...+.+.+++.|++++++++|+++..+++  .+.+   .+|+  ++.+|.||.|+|..
T Consensus       149 ~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~  209 (501)
T 2qcu_A          149 ARLVLANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPW  209 (501)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTTCCEEEEEESCEEECCGGG
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEECCCCCEEEEECCEEEECCChh
Confidence            45677788888999999999999998876555  5655   3565  79999999999976

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.39  E-value=9.5e-07  Score=79.71  Aligned_cols=94  Identities=17%  Similarity=0.161  Sum_probs=74.9

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc---------------ccc----CchhHHHHHHHHHcCCcEEE
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL---------------EFV----GSRASQIALDWLTSKKVEVI  200 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l---------------~~~----~~~~~~~~~~~l~~~gv~i~  200 (368)
                      .+++|||+|+.|+.+|..|.+  .+.+|+++++.+.+.               +.+    ..++...+.+.+++.+++++
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   83 (335)
T 2zbw_A            6 TDVLIVGAGPTGLFAGFYVGM--RGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVYS   83 (335)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEEE
Confidence            579999999999999999985  478999999876431               011    13455667777888899999


Q ss_pred             ecceeeecccCCC--eEEcCCCcEEecCEEEEccCCC
Q 017664          201 LNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       201 ~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      .++.|..++.+++  .+.+.+|+++.+|.+|+|+|..
T Consensus        84 ~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~  120 (335)
T 2zbw_A           84 LGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVG  120 (335)
T ss_dssp             ESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTS
T ss_pred             eCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCC
Confidence            9999998876654  5777888889999999999984

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.39  E-value=4.6e-06  Score=81.02  Aligned_cols=55  Identities=16%  Similarity=0.169  Sum_probs=42.7

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCC-C---eEEcC--CCc--EEecCEEEEccCCCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISD-G---LIETS--SGE--TIDTDCHFMCTGKAM  236 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~---~v~~~--~g~--~i~~d~vi~a~G~~p  236 (368)
                      ..+...+.+.+++.||+++++++++++..++ +   ++...  +|+  ++.+|.||+|+|..+
T Consensus       255 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~  317 (572)
T 1d4d_A          255 AHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFA  317 (572)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             HHHHHHHHHHHHHcCCeEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCc
Confidence            3566778888999999999999999987655 4   34443  664  689999999999654

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.38  E-value=1.2e-06  Score=77.40  Aligned_cols=96  Identities=19%  Similarity=0.177  Sum_probs=73.1

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc---------ccc----CchhHHHHHHHHHcC-CcEEEeccee
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL---------EFV----GSRASQIALDWLTSK-KVEVILNQSV  205 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l---------~~~----~~~~~~~~~~~l~~~-gv~i~~~~~v  205 (368)
                      .+++|||+|+.|+.+|..|.+  .+.+|+++++++...         +..    ..++...+.+.+++. +++++.. ++
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v   79 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGR--ARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEG-RV   79 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEES-CE
T ss_pred             CCEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEe-EE
Confidence            479999999999999999986  378999999753211         111    124556677777776 7888754 78


Q ss_pred             eecccCCC--eEEcCCCcEEecCEEEEccCCCCCc
Q 017664          206 TLNTISDG--LIETSSGETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       206 ~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~  238 (368)
                      ..+..+++  .+.+.+|+++.+|.+|+|+|..|..
T Consensus        80 ~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~  114 (297)
T 3fbs_A           80 TDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDEL  114 (297)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEEEEEECCCCEEEC
T ss_pred             EEEEEcCCeEEEEECCCCEEEcCEEEECCCCCCCC
Confidence            88876654  7888899899999999999987654

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.37  E-value=1.4e-06  Score=79.45  Aligned_cols=95  Identities=21%  Similarity=0.267  Sum_probs=76.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc-------c--------cc----CchhHHHHHHHHHcCCcEE
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL-------E--------FV----GSRASQIALDWLTSKKVEV  199 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l-------~--------~~----~~~~~~~~~~~l~~~gv~i  199 (368)
                      ..+|+|||+|+.|+.+|..|.+  .+.+|+++++.+.+.       +        .+    ...+.+.+.+.+++.++++
T Consensus        14 ~~dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   91 (360)
T 3ab1_A           14 MRDLTIIGGGPTGIFAAFQCGM--NNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDV   91 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEE
Confidence            4689999999999999999985  478999999875431       1        11    1355666778888899999


Q ss_pred             EecceeeecccCCC---eEEcCCCcEEecCEEEEccCCC
Q 017664          200 ILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       200 ~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      +.++.|..+..+++   .+.+.+|+++.+|.+|+|+|..
T Consensus        92 ~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~  130 (360)
T 3ab1_A           92 VLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLG  130 (360)
T ss_dssp             ECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTC
T ss_pred             EcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCC
Confidence            99999998876543   6788888899999999999984

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.37  E-value=6.1e-07  Score=84.68  Aligned_cols=99  Identities=19%  Similarity=0.272  Sum_probs=74.9

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc--c-c----cCc------hhHHHHHHHHHcCCcEEEecceee
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL--E-F----VGS------RASQIALDWLTSKKVEVILNQSVT  206 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l--~-~----~~~------~~~~~~~~~l~~~gv~i~~~~~v~  206 (368)
                      ++++|||+|+.|+.+|..|+++.++.+|+++++++.+.  + .    ...      .+.....+.+++.|++++.++.|.
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~   82 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVV   82 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            58999999999999999999876789999999887542  1 0    000      111113467788999999999999


Q ss_pred             ecccCCCeEEc---CCCcEEecCEEEEccCCCCCc
Q 017664          207 LNTISDGLIET---SSGETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       207 ~i~~~~~~v~~---~~g~~i~~d~vi~a~G~~p~~  238 (368)
                      .+..+++.+.+   .+++++.+|.+|+|||.+|..
T Consensus        83 ~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~  117 (452)
T 3oc4_A           83 AMDVENQLIAWTRKEEQQWYSYDKLILATGASQFS  117 (452)
T ss_dssp             EEETTTTEEEEEETTEEEEEECSEEEECCCCCBCC
T ss_pred             EEECCCCEEEEEecCceEEEEcCEEEECCCcccCC
Confidence            98877765443   356689999999999998764

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.34  E-value=1e-06  Score=81.76  Aligned_cols=33  Identities=27%  Similarity=0.458  Sum_probs=30.2

Q ss_pred             CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      .+|+||||||+||++|..|+ +|++|+|+||.+.
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~   35 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA   35 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            58999999999999999998 4999999998764

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.33  E-value=2.2e-06  Score=76.43  Aligned_cols=95  Identities=19%  Similarity=0.212  Sum_probs=73.3

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCC-eEEEEecCcc-----------ccccc-----CchhHHHHHHHHHcCCcEEEecc
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDK-KVILVHRGPK-----------LLEFV-----GSRASQIALDWLTSKKVEVILNQ  203 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~-~v~~i~~~~~-----------~l~~~-----~~~~~~~~~~~l~~~gv~i~~~~  203 (368)
                      +++|||+|+.|+.+|..+.+  .+. +|+++++...           ..+.+     ...+.+.+.+.+++.|++++. +
T Consensus         3 dvvIIG~G~aGl~aA~~l~~--~g~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~-~   79 (311)
T 2q0l_A            3 DCAIIGGGPAGLSAGLYATR--GGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEM-T   79 (311)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEEC-S
T ss_pred             eEEEECccHHHHHHHHHHHH--CCCCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEE-E
Confidence            68999999999999999986  377 9999998521           01111     134566677788889999998 7


Q ss_pred             eeeecccCCC--eEEcCCCcEEecCEEEEccCCCCCc
Q 017664          204 SVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       204 ~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~  238 (368)
                      ++..+..+++  .+.+.+|+++++|.+|+|+|..|..
T Consensus        80 ~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~  116 (311)
T 2q0l_A           80 AVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKR  116 (311)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCCC
Confidence            7887776655  6767888899999999999977643

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.32  E-value=2e-06  Score=76.66  Aligned_cols=96  Identities=26%  Similarity=0.242  Sum_probs=73.6

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc--ccc--------cc----cCchhHHHHHHHHHcCCcEEEecceee
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP--KLL--------EF----VGSRASQIALDWLTSKKVEVILNQSVT  206 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~--~~l--------~~----~~~~~~~~~~~~l~~~gv~i~~~~~v~  206 (368)
                      +++|||+|+.|+.+|..+.+  .+.+|+++++..  ...        ..    ..+.+...+.+.+++.|++++.++++.
T Consensus         3 dvvIIG~G~aGl~aA~~l~~--~g~~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~   80 (310)
T 1fl2_A            3 DVLIVGSGPAGAAAAIYSAR--KGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSAS   80 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHT--TTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEE
T ss_pred             CEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCEEE
Confidence            68999999999999999985  478999997531  110        00    113556677788889999999999998


Q ss_pred             ecccCC----C-eEEcCCCcEEecCEEEEccCCCCCc
Q 017664          207 LNTISD----G-LIETSSGETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       207 ~i~~~~----~-~v~~~~g~~i~~d~vi~a~G~~p~~  238 (368)
                      .+..+.    . .+.+.+|+++++|.+|+|+|..|..
T Consensus        81 ~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~  117 (310)
T 1fl2_A           81 KLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRN  117 (310)
T ss_dssp             EEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EEEecccCCceEEEEECCCCEEEeCEEEECcCCCcCC
Confidence            886531    2 6778888899999999999987643

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.32  E-value=1.1e-06  Score=83.35  Aligned_cols=100  Identities=16%  Similarity=0.219  Sum_probs=65.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc------cc-c------Cchh-------HHHHHHHHHcCCcE
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL------EF-V------GSRA-------SQIALDWLTSKKVE  198 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l------~~-~------~~~~-------~~~~~~~l~~~gv~  198 (368)
                      .++|+|||+|+.|+.+|..|+++.++.+|+++++++.+.      +. .      ...+       ........++.|++
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~   82 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVE   82 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcE
Confidence            368999999999999999999876789999999987631      11 0      0111       11222233358999


Q ss_pred             EEecceeeecccCCCeEEcC---CCc--EEecCEEEEccCCCCCc
Q 017664          199 VILNQSVTLNTISDGLIETS---SGE--TIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       199 i~~~~~v~~i~~~~~~v~~~---~g~--~i~~d~vi~a~G~~p~~  238 (368)
                      ++.++.+..++.++..+.+.   +|+  ++.+|.+|+|||.+|..
T Consensus        83 ~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~  127 (472)
T 3iwa_A           83 ALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANR  127 (472)
T ss_dssp             EECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECC
T ss_pred             EEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcCC
Confidence            99999999988777755443   365  89999999999987654

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.28  E-value=1.1e-06  Score=85.28  Aligned_cols=99  Identities=20%  Similarity=0.265  Sum_probs=73.0

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc------cc-----cC--c-hhHHHHHHHHHcCCcEEEeccee
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL------EF-----VG--S-RASQIALDWLTSKKVEVILNQSV  205 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l------~~-----~~--~-~~~~~~~~~l~~~gv~i~~~~~v  205 (368)
                      ++|+|||+|+.|+.+|..|.++.++.+|+++++.+.+.      +.     ..  . .+........++.|++++.+++|
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V   81 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHEV   81 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTSSSCCGGGGBCCCHHHHHHHHCCEEETTEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcCCcCChHHhhccCHHHHHHhcCcEEEECCEE
Confidence            58999999999999999999876688999999987631      10     00  0 11222334445589999999999


Q ss_pred             eecccCCCeEEcC---CCc--EEecCEEEEccCCCCCc
Q 017664          206 TLNTISDGLIETS---SGE--TIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       206 ~~i~~~~~~v~~~---~g~--~i~~d~vi~a~G~~p~~  238 (368)
                      ..+..+++.+.+.   +|+  ++.+|.+|+|||.+|..
T Consensus        82 ~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~  119 (565)
T 3ntd_A           82 VAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIV  119 (565)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECC
T ss_pred             EEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCCC
Confidence            9998777644433   354  79999999999987654

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.28  E-value=5.8e-07  Score=84.84  Aligned_cols=55  Identities=9%  Similarity=-0.109  Sum_probs=45.7

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccC--CC---eEEcCCCcEEecCEEEEccCCCCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTIS--DG---LIETSSGETIDTDCHFMCTGKAMA  237 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~--~~---~v~~~~g~~i~~d~vi~a~G~~p~  237 (368)
                      ..+.+.+.+.+++.|++++++++|++|..+  ++   .|.+ +|+++.+|.||+++|..+.
T Consensus       242 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~  301 (453)
T 2bcg_G          242 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFPE  301 (453)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccch
Confidence            478888899999999999999999998766  55   4555 5788999999999997753

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.27  E-value=2.1e-06  Score=83.82  Aligned_cols=101  Identities=15%  Similarity=0.206  Sum_probs=77.5

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc------c-----cc---CchhHHHHHHHHHcCCcEEEecc
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL------E-----FV---GSRASQIALDWLTSKKVEVILNQ  203 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l------~-----~~---~~~~~~~~~~~l~~~gv~i~~~~  203 (368)
                      ..++|+|||+|+.|+.+|..|.++.++.+|+++++++.+.      +     ..   ...+...+....++.|++++.++
T Consensus        35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~~~~  114 (588)
T 3ics_A           35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIRVLS  114 (588)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEECSE
T ss_pred             cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEEECC
Confidence            3578999999999999999999876789999999987631      0     00   11133445566678899999999


Q ss_pred             eeeecccCCCeEEc---CCCc--EEecCEEEEccCCCCCc
Q 017664          204 SVTLNTISDGLIET---SSGE--TIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       204 ~v~~i~~~~~~v~~---~~g~--~i~~d~vi~a~G~~p~~  238 (368)
                      .|..+..+++.+.+   .+|+  ++.+|.+|+|||.+|..
T Consensus       115 ~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~  154 (588)
T 3ics_A          115 EVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIV  154 (588)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECC
T ss_pred             EEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCCCCC
Confidence            99998877775443   3565  78999999999987654

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.26  E-value=1e-06  Score=83.10  Aligned_cols=98  Identities=18%  Similarity=0.139  Sum_probs=73.1

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc----------c-cc----CchhHHHHHHHHHcCCcEEEeccee
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL----------E-FV----GSRASQIALDWLTSKKVEVILNQSV  205 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l----------~-~~----~~~~~~~~~~~l~~~gv~i~~~~~v  205 (368)
                      +++|||+|+.|+.+|..+++..++.+|+++++.+.+.          . ..    ...+.....+.+++.|++++.++.+
T Consensus         2 dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v   81 (452)
T 2cdu_A            2 KVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRHQV   81 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGHHHHHTTCBGGGCGGGGBSCCHHHHHHTTCEEEESEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccchhhhcCCcccCCHHHhhhcCHHHHHHcCCEEEeCCEE
Confidence            6999999999999999999765689999999887421          0 00    1112222346677899999999999


Q ss_pred             eecccCCCeEEcCC-----CcEEecCEEEEccCCCCCc
Q 017664          206 TLNTISDGLIETSS-----GETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       206 ~~i~~~~~~v~~~~-----g~~i~~d~vi~a~G~~p~~  238 (368)
                      ..+..+++.+.+.+     ++++++|.+|+|||.+|..
T Consensus        82 ~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~~  119 (452)
T 2cdu_A           82 TNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTV  119 (452)
T ss_dssp             EEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEECC
T ss_pred             EEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcCC
Confidence            88876655555432     4679999999999988754

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.25  E-value=1.9e-06  Score=83.20  Aligned_cols=97  Identities=11%  Similarity=0.153  Sum_probs=76.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------------------c----------------cC
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE---------------------F----------------VG  181 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~---------------------~----------------~~  181 (368)
                      ..+|+|||+|++|+.+|..|.+  .+.+|+++++++.+..                     .                ..
T Consensus        21 ~~dVvIIGaG~aGl~aA~~L~~--~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~   98 (549)
T 4ap3_A           21 SYDVVVVGAGIAGLYAIHRFRS--QGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQ   98 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBH
T ss_pred             CCCEEEECchHHHHHHHHHHHh--CCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCH
Confidence            3579999999999999999986  5789999998653210                     0                01


Q ss_pred             chhHHHHHHHHHcCCc--EEEecceeeecccCCC----eEEcCCCcEEecCEEEEccC--CCCC
Q 017664          182 SRASQIALDWLTSKKV--EVILNQSVTLNTISDG----LIETSSGETIDTDCHFMCTG--KAMA  237 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv--~i~~~~~v~~i~~~~~----~v~~~~g~~i~~d~vi~a~G--~~p~  237 (368)
                      +++.+.+.+.+++.++  +++++++|+.++.+++    .|.+.+|+++.+|.+|+|+|  ..|.
T Consensus        99 ~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~  162 (549)
T 4ap3_A           99 PEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNAN  162 (549)
T ss_dssp             HHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECC
T ss_pred             HHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCC
Confidence            2455667777888888  8999999998876544    78899999999999999999  4444

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.25  E-value=4.8e-06  Score=74.75  Aligned_cols=97  Identities=15%  Similarity=0.166  Sum_probs=73.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc-----------ccccc-----CchhHHHHHHHHHcCCcEEEec
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK-----------LLEFV-----GSRASQIALDWLTSKKVEVILN  202 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~-----------~l~~~-----~~~~~~~~~~~l~~~gv~i~~~  202 (368)
                      ..+++|||+|+.|+.+|..+.+  .+.+|+++++...           ..+.+     ...+...+.+.+++.|++++. 
T Consensus         8 ~~dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-   84 (325)
T 2q7v_A            8 DYDVVIIGGGPAGLTAAIYTGR--AQLSTLILEKGMPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEM-   84 (325)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEE-
T ss_pred             cCCEEEECCCHHHHHHHHHHHH--cCCcEEEEeCCCCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEe-
Confidence            3579999999999999999986  4789999998721           01111     124556677788889999987 


Q ss_pred             ceeeecccC--CC---eEEcCCCcEEecCEEEEccCCCCCc
Q 017664          203 QSVTLNTIS--DG---LIETSSGETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       203 ~~v~~i~~~--~~---~v~~~~g~~i~~d~vi~a~G~~p~~  238 (368)
                      ..+..+..+  ++   .+.+.+|+++.+|.+|+|+|..|..
T Consensus        85 ~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~  125 (325)
T 2q7v_A           85 DEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRK  125 (325)
T ss_dssp             CCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECC
T ss_pred             eeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCC
Confidence            577777655  32   5667788899999999999987653

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.23  E-value=3.4e-06  Score=81.27  Aligned_cols=94  Identities=12%  Similarity=0.083  Sum_probs=74.3

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc--------c-------------c----------------Cc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE--------F-------------V----------------GS  182 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~--------~-------------~----------------~~  182 (368)
                      .+|+|||+|++|+.+|..|.++ .+.+|+++++++.+..        .             +                .+
T Consensus         9 ~dVvIIGaG~aGl~aA~~L~~~-~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~   87 (540)
T 3gwf_A            9 VDAVVIGAGFGGIYAVHKLHHE-LGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQP   87 (540)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT-TCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHc-CCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHH
Confidence            5799999999999999999832 5789999998653210        0             0                12


Q ss_pred             hhHHHHHHHHHcCCc--EEEecceeeecccCCC----eEEcCCCcEEecCEEEEccCC
Q 017664          183 RASQIALDWLTSKKV--EVILNQSVTLNTISDG----LIETSSGETIDTDCHFMCTGK  234 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv--~i~~~~~v~~i~~~~~----~v~~~~g~~i~~d~vi~a~G~  234 (368)
                      ++.+.+.+.+++.|+  +++++++|..++.+++    .|.+.+|+++.+|.+|+|+|.
T Consensus        88 ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~  145 (540)
T 3gwf_A           88 EILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGL  145 (540)
T ss_dssp             HHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCS
T ss_pred             HHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcc
Confidence            455667777888898  8999999998876544    788899999999999999994

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.23  E-value=2.4e-06  Score=80.42  Aligned_cols=99  Identities=19%  Similarity=0.229  Sum_probs=73.6

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc--c---------cc--CchhHHHHHHHHHcCCcEEEecceee
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL--E---------FV--GSRASQIALDWLTSKKVEVILNQSVT  206 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l--~---------~~--~~~~~~~~~~~l~~~gv~i~~~~~v~  206 (368)
                      ++++|||+|+.|+.+|..+++..++.+|+++++++.+.  +         ..  ..++.....+.+++.|++++.++.+.
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~   80 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT   80 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccccchhhhcCccCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            36999999999999999999765689999999886431  0         00  11222233466778899999999998


Q ss_pred             ecccCCCeEEcC---CCc--EEecCEEEEccCCCCCc
Q 017664          207 LNTISDGLIETS---SGE--TIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       207 ~i~~~~~~v~~~---~g~--~i~~d~vi~a~G~~p~~  238 (368)
                      .+..+++.+.+.   +|+  ++.+|.+|+|||.+|..
T Consensus        81 ~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~  117 (447)
T 1nhp_A           81 AIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFE  117 (447)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECC
T ss_pred             EEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcCC
Confidence            887766655553   365  48999999999988754

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.22  E-value=5.6e-06  Score=76.71  Aligned_cols=95  Identities=16%  Similarity=0.192  Sum_probs=73.2

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc--------------c---c-----------------------
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL--------------E---F-----------------------  179 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l--------------~---~-----------------------  179 (368)
                      .+|+|||+|++|+.+|..+++  .+.+|+++++.+.+.              .   .                       
T Consensus         5 ~dViIIGgG~aGl~aA~~la~--~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (401)
T 2gqf_A            5 SENIIIGAGAAGLFCAAQLAK--LGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWD   82 (401)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHh--CCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHH
Confidence            479999999999999999986  478999999875320              0   0                       


Q ss_pred             ------------------------cCchhHHHHHHHHHcCCcEEEecceeeecccC----CC--eEEcCCCcEEecCEEE
Q 017664          180 ------------------------VGSRASQIALDWLTSKKVEVILNQSVTLNTIS----DG--LIETSSGETIDTDCHF  229 (368)
Q Consensus       180 ------------------------~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~----~~--~v~~~~g~~i~~d~vi  229 (368)
                                              ....+.+.+.+.+++.|+++++++.++.+..+    ++  .+.+.+| ++++|.||
T Consensus        83 ~~~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~i~ad~VV  161 (401)
T 2gqf_A           83 FISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST-QWQCKNLI  161 (401)
T ss_dssp             HHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE-EEEESEEE
T ss_pred             HHHHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC-EEECCEEE
Confidence                                    11233455677788899999999999988755    33  5667766 79999999


Q ss_pred             EccCCCCC
Q 017664          230 MCTGKAMA  237 (368)
Q Consensus       230 ~a~G~~p~  237 (368)
                      +|+|..+.
T Consensus       162 lAtG~~s~  169 (401)
T 2gqf_A          162 VATGGLSM  169 (401)
T ss_dssp             ECCCCSSC
T ss_pred             ECCCCccC
Confidence            99998863

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.22  E-value=6.2e-06  Score=75.31  Aligned_cols=95  Identities=21%  Similarity=0.255  Sum_probs=71.5

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCC-eEEEEecCc------c------c-cc-------cc------------------
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDK-KVILVHRGP------K------L-LE-------FV------------------  180 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~-~v~~i~~~~------~------~-l~-------~~------------------  180 (368)
                      .+|+|||+|++|+.+|..|.+  .+. +|+++++++      .      . .+       .+                  
T Consensus         5 ~~vvIIGaG~aGl~aA~~l~~--~g~~~v~lie~~~~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   82 (369)
T 3d1c_A            5 HKVAIIGAGAAGIGMAITLKD--FGITDVIILEKGTVGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNE   82 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCCEEEECSSSTTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCC
T ss_pred             CcEEEECcCHHHHHHHHHHHH--cCCCcEEEEecCCCCCccccCcccccccCcchhcccCCchhhhhccccccccccccc
Confidence            479999999999999999986  366 899999874      0      0 00       00                  


Q ss_pred             ---C-chhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCCC
Q 017664          181 ---G-SRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMA  237 (368)
Q Consensus       181 ---~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~  237 (368)
                         . ..+...+.+.+++.|++++.++.|..+..+++  .+.+.++ ++.+|.+|+|+|..+.
T Consensus        83 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~  144 (369)
T 3d1c_A           83 EHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYNF  144 (369)
T ss_dssp             SSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTTS
T ss_pred             cCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCCc
Confidence               0 12344556677889999999999998876644  6777777 5999999999998754

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.21  E-value=5e-06  Score=74.87  Aligned_cols=96  Identities=18%  Similarity=0.124  Sum_probs=73.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEec----Cccc------------cccc-----CchhHHHHHHHHHcCCc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHR----GPKL------------LEFV-----GSRASQIALDWLTSKKV  197 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~----~~~~------------l~~~-----~~~~~~~~~~~l~~~gv  197 (368)
                      ..+++|||+|+.|+.+|..|.+  .+.+|+++++    ....            .+.+     ...+...+.+.+++.|+
T Consensus         8 ~~~vvIIG~G~aGl~~A~~l~~--~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv   85 (333)
T 1vdc_A            8 NTRLCIVGSGPAAHTAAIYAAR--AELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGT   85 (333)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEECcCHHHHHHHHHHHH--CCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCC
Confidence            3579999999999999999986  3789999987    2211            1111     12456667778888999


Q ss_pred             EEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCCCc
Q 017664          198 EVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       198 ~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~  238 (368)
                      +++.++ +..+..+++  .+.+ +|+++.+|.+|+|+|..|..
T Consensus        86 ~~~~~~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~~  126 (333)
T 1vdc_A           86 TIFTET-VTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAKR  126 (333)
T ss_dssp             EEECCC-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEECC
T ss_pred             EEEEeE-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcCC
Confidence            999987 877776554  6777 77889999999999987653

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.21  E-value=4.6e-06  Score=74.21  Aligned_cols=97  Identities=16%  Similarity=0.174  Sum_probs=65.8

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc------ccc-------cCchhHHHHHHHHHcCC-cEEEeccee
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL------LEF-------VGSRASQIALDWLTSKK-VEVILNQSV  205 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~------l~~-------~~~~~~~~~~~~l~~~g-v~i~~~~~v  205 (368)
                      -.|+|||+|+.|+.+|..+++  .+.+|+++++...-      .+.       ..+++.+...+.+.+.+ +.++....+
T Consensus         7 yDVvIIGaGpAGlsAA~~lar--~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (304)
T 4fk1_A            7 IDCAVIGAGPAGLNASLVLGR--ARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEKTVV   84 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEECCEE
T ss_pred             cCEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEeeEEE
Confidence            369999999999999988875  47899999975310      010       11234444555555554 555544443


Q ss_pred             eecccCCC--eEEcCCCcEEecCEEEEccCCCCCc
Q 017664          206 TLNTISDG--LIETSSGETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       206 ~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~  238 (368)
                      .....+++  .+.+.+|+++++|.+|+|||.+|..
T Consensus        85 ~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~~  119 (304)
T 4fk1_A           85 MITKQSTGLFEIVTKDHTKYLAERVLLATGMQEEF  119 (304)
T ss_dssp             EEEECTTSCEEEEETTCCEEEEEEEEECCCCEEEC
T ss_pred             EeeecCCCcEEEEECCCCEEEeCEEEEccCCcccc
Confidence            33233333  7888999999999999999987653

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.20  E-value=1.7e-06  Score=82.48  Aligned_cols=100  Identities=20%  Similarity=0.360  Sum_probs=73.5

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---cCchh--------HHH--------------------
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF---VGSRA--------SQI--------------------  187 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~---~~~~~--------~~~--------------------  187 (368)
                      ..+++|||+|+.|+.+|..|.++.++.+|+++++.+.+...   ....+        ...                    
T Consensus        11 ~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (493)
T 1m6i_A           11 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSF   90 (493)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGG
T ss_pred             cCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccccccchHh
Confidence            45799999999999999999876678899999988643100   00000        000                    


Q ss_pred             HH-----HHHHcCCcEEEecceeeecccCCCeEEcCCCcEEecCEEEEccCCCCCc
Q 017664          188 AL-----DWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       188 ~~-----~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~  238 (368)
                      +.     ..+++.||+++.++.+..+..++..|.+.+|+++.+|.+|+|||.+|..
T Consensus        91 ~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~~g~~i~yd~lviATGs~p~~  146 (493)
T 1m6i_A           91 YVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRS  146 (493)
T ss_dssp             SBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             hcchhhhhhhhcCCeEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCC
Confidence            00     0012568999999999988776668889999999999999999988753

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.19  E-value=5.1e-06  Score=78.22  Aligned_cols=98  Identities=17%  Similarity=0.206  Sum_probs=72.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCC--eEEEEecCccccc---cc---------------------------------
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDK--KVILVHRGPKLLE---FV---------------------------------  180 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~--~v~~i~~~~~~l~---~~---------------------------------  180 (368)
                      ..+|+|||+|++|+.+|..|.+  .+.  +|+++++.+.+..   ..                                 
T Consensus         6 ~~dV~IIGaG~aGl~aA~~L~~--~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~   83 (447)
T 2gv8_A            6 IRKIAIIGAGPSGLVTAKALLA--EKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSP   83 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT--TTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCC
T ss_pred             CCEEEEECccHHHHHHHHHHHh--cCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCc
Confidence            5789999999999999999985  466  9999998753210   00                                 


Q ss_pred             ------------------------------CchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCC---Cc---E
Q 017664          181 ------------------------------GSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSS---GE---T  222 (368)
Q Consensus       181 ------------------------------~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~---g~---~  222 (368)
                                                    ...+.+.+.+.+++.+..++.+++|+.++.+++  .|.+.+   |+   +
T Consensus        84 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~~  163 (447)
T 2gv8_A           84 LYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISK  163 (447)
T ss_dssp             CCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEE
T ss_pred             hhhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeEE
Confidence                                          012344556666667788999999998876655  566554   66   7


Q ss_pred             EecCEEEEccCC--CCCc
Q 017664          223 IDTDCHFMCTGK--AMAS  238 (368)
Q Consensus       223 i~~d~vi~a~G~--~p~~  238 (368)
                      +.+|.||+|+|.  .|..
T Consensus       164 ~~~d~VVvAtG~~s~p~~  181 (447)
T 2gv8_A          164 DIFDAVSICNGHYEVPYI  181 (447)
T ss_dssp             EEESEEEECCCSSSSBCB
T ss_pred             EEeCEEEECCCCCCCCCC
Confidence            999999999998  5543

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.19  E-value=1.4e-06  Score=81.79  Aligned_cols=98  Identities=13%  Similarity=0.120  Sum_probs=70.4

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-----------cC---chhHHHHHHHHHcCCcEEEecceee
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF-----------VG---SRASQIALDWLTSKKVEVILNQSVT  206 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~-----------~~---~~~~~~~~~~l~~~gv~i~~~~~v~  206 (368)
                      ||+|||+|+.|+.+|..+++..+..+|+++++++.....           ..   ..+.....+.+++.+++++.+++|.
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~   81 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYHEVI   81 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHHTTSSCCGGGTBCCCHHHHHHHHCCEEEETEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHHcCCccchhhhhhcCHHHHHHhcCCEEEeCCeEE
Confidence            699999999999999999876556789999987643100           00   0011112355677899999999999


Q ss_pred             ecccCCCeEEc-----CCCcEEecCEEEEccCCCCCc
Q 017664          207 LNTISDGLIET-----SSGETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       207 ~i~~~~~~v~~-----~~g~~i~~d~vi~a~G~~p~~  238 (368)
                      .+..+...+.+     .++.++.+|.+|+|||.+|..
T Consensus        82 ~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~  118 (437)
T 4eqs_A           82 AINDERQTVSVLNRKTNEQFEESYDKLILSPGASANS  118 (437)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEECSEEEECCCEEECC
T ss_pred             EEEccCcEEEEEeccCCceEEEEcCEEEECCCCcccc
Confidence            88877663332     223478899999999998764

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.19  E-value=3.4e-06  Score=79.78  Aligned_cols=99  Identities=12%  Similarity=0.162  Sum_probs=71.6

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhC-CCCe---EEEEecCccccc-------------------------------------
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDF-PDKK---VILVHRGPKLLE-------------------------------------  178 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~-~~~~---v~~i~~~~~~l~-------------------------------------  178 (368)
                      ++|+|||+|++|+.+|..|.+.. .+.+   |+++++++.+..                                     
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~   82 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA   82 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence            58999999999999999998511 3667   999998754210                                     


Q ss_pred             cc---------------CchhHHHHHHHHHcCCcE--EEecceeeecccCCC----eEEcCC---C--cEEecCEEEEcc
Q 017664          179 FV---------------GSRASQIALDWLTSKKVE--VILNQSVTLNTISDG----LIETSS---G--ETIDTDCHFMCT  232 (368)
Q Consensus       179 ~~---------------~~~~~~~~~~~l~~~gv~--i~~~~~v~~i~~~~~----~v~~~~---g--~~i~~d~vi~a~  232 (368)
                      .+               ...+.+.+.+.+++.|++  +++++.|..++.+++    .|.+.+   |  .++.+|.||+|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAt  162 (464)
T 2xve_A           83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT  162 (464)
T ss_dssp             TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECC
T ss_pred             CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECC
Confidence            00               023345566677778988  889999998876543    565544   4  578999999999


Q ss_pred             C--CCCCc
Q 017664          233 G--KAMAS  238 (368)
Q Consensus       233 G--~~p~~  238 (368)
                      |  ..|..
T Consensus       163 G~~s~p~~  170 (464)
T 2xve_A          163 GHFSTPYV  170 (464)
T ss_dssp             CSSSSBCC
T ss_pred             CCCCCCcc
Confidence            9  56654

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.18  E-value=1.3e-06  Score=79.88  Aligned_cols=46  Identities=13%  Similarity=0.244  Sum_probs=39.0

Q ss_pred             cCCCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCC-Cceeeeccc
Q 017664           11 AGLVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEK-EYFEITWAS   56 (368)
Q Consensus        11 ~~~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~-~~~~~~~~~   56 (368)
                      +.+...+||+|||||++||+||+.|++ |++|+|+|++ +.+|+.+..
T Consensus        39 ~~~~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t   86 (376)
T 2e1m_A           39 NPPGPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKT   86 (376)
T ss_dssp             SSCCSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCE
T ss_pred             CCCCCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceee
Confidence            445567899999999999999999984 9999999999 888765443

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.16  E-value=2.9e-06  Score=75.67  Aligned_cols=96  Identities=17%  Similarity=0.117  Sum_probs=70.4

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc-------c---------ccc-----CchhHHHHHHHHHcCCcE
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL-------L---------EFV-----GSRASQIALDWLTSKKVE  198 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~-------l---------~~~-----~~~~~~~~~~~l~~~gv~  198 (368)
                      ..|+|||+|+.|+.+|..+++  .+.+|+++++....       +         +.+     .+++...+.+.+++.+++
T Consensus         5 yDvvIIG~GpAGl~AA~~la~--~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~   82 (314)
T 4a5l_A            5 HDVVIIGSGPAAHTAAIYLGR--SSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTT   82 (314)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred             CcEEEECCCHHHHHHHHHHHH--CCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcE
Confidence            369999999999999999885  47899999875410       0         111     134566777888899999


Q ss_pred             EEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCCCc
Q 017664          199 VILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       199 i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~  238 (368)
                      +..... ........  .+.+.++.++.+|.+|+|||.+|..
T Consensus        83 ~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~~  123 (314)
T 4a5l_A           83 IITETI-DHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKR  123 (314)
T ss_dssp             EECCCE-EEEECSSSSEEEEETTCCEEEEEEEEECCCEEECC
T ss_pred             EEEeEE-EEeecCCCceEEEECCCeEEEEeEEEEcccccccc
Confidence            886654 33333333  6677888899999999999987654

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.16  E-value=1.6e-06  Score=80.40  Aligned_cols=44  Identities=16%  Similarity=0.224  Sum_probs=38.3

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-c-CCcEEEEcCCCceeeeccc
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-S-FADVVLIDEKEYFEITWAS   56 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~-g~~v~lie~~~~~~~~~~~   56 (368)
                      |.+++||+|||||++||+||+.|+ + |.+|+|+|+++.+|+....
T Consensus         4 m~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~   49 (399)
T 1v0j_A            4 MTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYS   49 (399)
T ss_dssp             CCCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCE
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeee
Confidence            455789999999999999999997 5 8999999999988866543

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.16  E-value=1e-05  Score=72.22  Aligned_cols=97  Identities=13%  Similarity=0.198  Sum_probs=71.9

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc---cc--------ccc----CchhHHHHHHHHHcCCcEEEecce
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK---LL--------EFV----GSRASQIALDWLTSKKVEVILNQS  204 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~---~l--------~~~----~~~~~~~~~~~l~~~gv~i~~~~~  204 (368)
                      -.|+|||+|+.|+.+|..+++  .+.+|+++++...   .+        |.+    .+++.....+...+.+..+..+..
T Consensus         7 yDvvIIG~GpAGl~aA~~l~~--~g~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (312)
T 4gcm_A            7 FDIAIIGAGPAGMTAAVYASR--ANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDI   84 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEECCC
T ss_pred             CCEEEECCCHHHHHHHHHHHH--CCCCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccceee
Confidence            368999999999999999985  4889999987531   11        111    134555666777788888888777


Q ss_pred             eeecccCCCeEEcCCCcEEecCEEEEccCCCCCc
Q 017664          205 VTLNTISDGLIETSSGETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       205 v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~  238 (368)
                      ............+.+++++++|.+|+|||.+|..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~d~liiAtGs~~~~  118 (312)
T 4gcm_A           85 KSVEDKGEYKVINFGNKELTAKAVIIATGAEYKK  118 (312)
T ss_dssp             CEEEECSSCEEEECSSCEEEEEEEEECCCEEECC
T ss_pred             eeeeeeecceeeccCCeEEEeceeEEcccCccCc
Confidence            6655544446667778899999999999987754

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.15  E-value=3.1e-06  Score=81.63  Aligned_cols=97  Identities=19%  Similarity=0.158  Sum_probs=74.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc-------------------------c------c------cC
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL-------------------------E------F------VG  181 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l-------------------------~------~------~~  181 (368)
                      ..+|+|||+|++|+.+|..|.+  .+.+|+++++++.+.                         +      .      ..
T Consensus         9 ~~dVvIIGaG~aGl~aA~~L~~--~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~   86 (545)
T 3uox_A            9 ALDAVVIGAGVTGIYQAFLINQ--AGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQ   86 (545)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBH
T ss_pred             CCCEEEECccHHHHHHHHHHHh--CCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCH
Confidence            3579999999999999999986  578999999875321                         0      0      11


Q ss_pred             chhHHHHHHHHHcCCc--EEEecceeeecccCCC----eEEcCCCcEEecCEEEEccC--CCCC
Q 017664          182 SRASQIALDWLTSKKV--EVILNQSVTLNTISDG----LIETSSGETIDTDCHFMCTG--KAMA  237 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv--~i~~~~~v~~i~~~~~----~v~~~~g~~i~~d~vi~a~G--~~p~  237 (368)
                      +++...+.+.+++.++  .++.+++|..++.++.    .|.+.+|+++.+|.+|+|+|  ..|.
T Consensus        87 ~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~  150 (545)
T 3uox_A           87 PEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASR  150 (545)
T ss_dssp             HHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC--
T ss_pred             HHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCc
Confidence            3455666677777777  7889999998876543    78889999999999999999  4554

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.15  E-value=5.3e-06  Score=73.86  Aligned_cols=95  Identities=19%  Similarity=0.182  Sum_probs=70.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEE-EecCcc---c--------ccccC-----chhHHHHHHHHHcCCcEEEe
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVIL-VHRGPK---L--------LEFVG-----SRASQIALDWLTSKKVEVIL  201 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~-i~~~~~---~--------l~~~~-----~~~~~~~~~~l~~~gv~i~~  201 (368)
                      .++|+|||+|+.|+.+|..|.++  +.+|++ +++...   .        .+.++     .++...+.+.+++.|++++.
T Consensus         4 ~~~vvIIG~G~aGl~aA~~l~~~--g~~v~li~e~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   81 (315)
T 3r9u_A            4 MLDVAIIGGGPAGLSAGLYATRG--GLKNVVMFEKGMPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEM   81 (315)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHH--TCSCEEEECSSSTTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEEC
T ss_pred             CceEEEECCCHHHHHHHHHHHHC--CCCeEEEEeCCCCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEEE
Confidence            35899999999999999999864  788888 887321   0        11222     35667778888899999998


Q ss_pred             cceeeecccCC--C--eE-EcCCCcEEecCEEEEccCCCCCc
Q 017664          202 NQSVTLNTISD--G--LI-ETSSGETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       202 ~~~v~~i~~~~--~--~v-~~~~g~~i~~d~vi~a~G~~p~~  238 (368)
                      + .+..+ .++  +  .+ ...++ ++.+|.+|+|+|..|..
T Consensus        82 ~-~v~~i-~~~~~~~~~v~~~~~~-~~~~d~lvlAtG~~~~~  120 (315)
T 3r9u_A           82 V-GVEQI-LKNSDGSFTIKLEGGK-TELAKAVIVCTGSAPKK  120 (315)
T ss_dssp             C-CEEEE-EECTTSCEEEEETTSC-EEEEEEEEECCCEEECC
T ss_pred             E-EEEEE-ecCCCCcEEEEEecCC-EEEeCEEEEeeCCCCCC
Confidence            8 77777 444  3  32 33344 89999999999987654

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.14  E-value=3e-06  Score=80.55  Aligned_cols=99  Identities=13%  Similarity=0.217  Sum_probs=72.0

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc------cc------c-CchhHHHHHHHH-HcCCcEEEeccee
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL------EF------V-GSRASQIALDWL-TSKKVEVILNQSV  205 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l------~~------~-~~~~~~~~~~~l-~~~gv~i~~~~~v  205 (368)
                      .+++|||+|+.|+.+|..+++..++.+|+++++.+...      +.      . ...+.....+.+ ++.|++++.++.+
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gv~~~~~~~v  116 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHEV  116 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHHHHHHTTCCEEESSEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHHHHHhhcCCEEEeCCEE
Confidence            58999999999999999998755688999999876531      10      0 111112223445 4459999999999


Q ss_pred             eecccCCCeEEc---CCCc--EEecCEEEEccCCCCCc
Q 017664          206 TLNTISDGLIET---SSGE--TIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       206 ~~i~~~~~~v~~---~~g~--~i~~d~vi~a~G~~p~~  238 (368)
                      ..+..+++.+.+   .+|+  ++.+|.+|+|||.+|..
T Consensus       117 ~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~  154 (480)
T 3cgb_A          117 TKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVM  154 (480)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECC
T ss_pred             EEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCcccC
Confidence            888776665544   3466  79999999999988754

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.12  E-value=1.9e-06  Score=80.44  Aligned_cols=41  Identities=12%  Similarity=0.261  Sum_probs=36.1

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhc-C-CcEEEEcCCCceeeec
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQS-F-ADVVLIDEKEYFEITW   54 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~-g-~~v~lie~~~~~~~~~   54 (368)
                      ++++||+|||||++||+||++|++ | .+|+|+|+++..|+..
T Consensus         4 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~   46 (424)
T 2b9w_A            4 SKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKC   46 (424)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcc
Confidence            456899999999999999999984 8 8999999999887543

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.12  E-value=7.5e-06  Score=73.19  Aligned_cols=96  Identities=18%  Similarity=0.220  Sum_probs=71.7

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc-----------ccccc-----CchhHHHHHHHHHcCCcEEEecc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK-----------LLEFV-----GSRASQIALDWLTSKKVEVILNQ  203 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~-----------~l~~~-----~~~~~~~~~~~l~~~gv~i~~~~  203 (368)
                      .+++|||+|+.|+.+|..|.+  .+.+|+++++...           ..+.+     .+.+.+.+.+.+++.|++++.++
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (320)
T 1trb_A            6 SKLLILGSGPAGYTAAVYAAR--ANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH   83 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHHT--TTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC
T ss_pred             CCEEEECcCHHHHHHHHHHHH--CCCcEEEEccCCCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEee
Confidence            579999999999999999985  4788999985420           01111     13456667778888999999886


Q ss_pred             eeeecccCCCeEE-cCCCcEEecCEEEEccCCCCCc
Q 017664          204 SVTLNTISDGLIE-TSSGETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       204 ~v~~i~~~~~~v~-~~~g~~i~~d~vi~a~G~~p~~  238 (368)
                       +..++.+++.+. +.+++++.+|.+|+|+|..|..
T Consensus        84 -v~~i~~~~~~~~v~~~~~~~~~~~lv~AtG~~~~~  118 (320)
T 1trb_A           84 -INKVDLQNRPFRLNGDNGEYTCDALIIATGASARY  118 (320)
T ss_dssp             -EEEEECSSSSEEEEESSCEEEEEEEEECCCEEECC
T ss_pred             -eeEEEecCCEEEEEeCCCEEEcCEEEECCCCCcCC
Confidence             777776555222 6677889999999999987654

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.11  E-value=1.1e-05  Score=72.76  Aligned_cols=97  Identities=15%  Similarity=0.158  Sum_probs=73.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc---c--------cccc-----CchhHHHHHHHHHcCCcEEEec
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK---L--------LEFV-----GSRASQIALDWLTSKKVEVILN  202 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~---~--------l~~~-----~~~~~~~~~~~l~~~gv~i~~~  202 (368)
                      ..+++|||+|+.|+.+|..|.+  .+.+|+++++...   .        .+.+     .+++...+.+.+++.|++++.+
T Consensus        14 ~~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~   91 (335)
T 2a87_A           14 VRDVIVIGSGPAGYTAALYAAR--AQLAPLVFEGTSFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRME   91 (335)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHH--TTCCCEEECCSSCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEEECC
T ss_pred             cCCEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEEEEe
Confidence            4679999999999999999986  3788999985311   0        1111     1355666777888899999998


Q ss_pred             ceeeecccCCC-eE-EcCCCcEEecCEEEEccCCCCCc
Q 017664          203 QSVTLNTISDG-LI-ETSSGETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       203 ~~v~~i~~~~~-~v-~~~~g~~i~~d~vi~a~G~~p~~  238 (368)
                      + +..++..+. .+ .+.+|+++.+|.+|+|+|..|..
T Consensus        92 ~-v~~i~~~~~~~v~~~~~g~~~~~d~lviAtG~~~~~  128 (335)
T 2a87_A           92 D-VESVSLHGPLKSVVTADGQTHRARAVILAMGAAARY  128 (335)
T ss_dssp             C-EEEEECSSSSEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             e-EEEEEeCCcEEEEEeCCCCEEEeCEEEECCCCCccC
Confidence            7 777766332 57 77888899999999999987653

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.11  E-value=9.9e-06  Score=77.77  Aligned_cols=97  Identities=27%  Similarity=0.265  Sum_probs=75.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc--ccc--------c----ccCchhHHHHHHHHHcCCcEEEecce
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP--KLL--------E----FVGSRASQIALDWLTSKKVEVILNQS  204 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~--~~l--------~----~~~~~~~~~~~~~l~~~gv~i~~~~~  204 (368)
                      ..+++|||+|+.|+.+|..+++  .+.+|.++++..  ...        .    ...+.+...+.+.+++.|++++.+++
T Consensus       212 ~~dVvIIGgG~AGl~aA~~la~--~G~~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~~~  289 (521)
T 1hyu_A          212 AYDVLIVGSGPAGAAAAVYSAR--KGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQS  289 (521)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECSCC
T ss_pred             cccEEEECCcHHHHHHHHHHHh--CCCeEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcCCE
Confidence            4579999999999999999986  478999997531  110        0    11235667778888999999999999


Q ss_pred             eeecccC---C-C-eEEcCCCcEEecCEEEEccCCCCC
Q 017664          205 VTLNTIS---D-G-LIETSSGETIDTDCHFMCTGKAMA  237 (368)
Q Consensus       205 v~~i~~~---~-~-~v~~~~g~~i~~d~vi~a~G~~p~  237 (368)
                      +..+..+   + . .+.+.+|+++.+|.+|+|+|..|.
T Consensus       290 v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~  327 (521)
T 1hyu_A          290 ASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWR  327 (521)
T ss_dssp             EEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEEC
T ss_pred             EEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence            9888643   1 2 678888989999999999998754

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.10  E-value=2.2e-05  Score=70.44  Aligned_cols=163  Identities=15%  Similarity=0.113  Sum_probs=100.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------------------------cc-----------
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE---------------------------FV-----------  180 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~---------------------------~~-----------  180 (368)
                      ...|+|||+|+.|+.+|..+.++.++.+|.++++.+.+..                           .+           
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~~~~~~  158 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKH  158 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccccCCeEEEec
Confidence            5689999999999999999987546889999998753210                           00           


Q ss_pred             CchhHHHHHHHHHc-CCcEEEecceeeecccCC-----------------C-----eEEc------C--------CCcEE
Q 017664          181 GSRASQIALDWLTS-KKVEVILNQSVTLNTISD-----------------G-----LIET------S--------SGETI  223 (368)
Q Consensus       181 ~~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~-----------------~-----~v~~------~--------~g~~i  223 (368)
                      ...+...+.+.+++ .|++++.++.+..+..++                 +     .+..      .        +..++
T Consensus       159 ~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i  238 (344)
T 3jsk_A          159 AALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTI  238 (344)
T ss_dssp             HHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEE
T ss_pred             HHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEE
Confidence            11223455566666 599999999988775433                 1     2222      1        23479


Q ss_pred             ecCEEEEccCCCCCc-h----hhhccccccccCCCCcE--------EeCCCeeecCCCCeEEecccCCC----C--ccch
Q 017664          224 DTDCHFMCTGKAMAS-S----WLRETILKDSLDGRGRL--------MVDENLRVRGFKNVFAIGDITDI----P--EIKQ  284 (368)
Q Consensus       224 ~~d~vi~a~G~~p~~-~----~~~~~~l~~~~~~~g~i--------~vd~~~~~~~~~~ifa~GD~~~~----~--~~~~  284 (368)
                      .++.||.|||..... .    .+...++...+...+.+        .|+.+-+.  +|++|++|=.+..    |  .| .
T Consensus       239 ~Ak~VV~ATG~~s~v~~~~~~~l~~~~~~~~~~g~~~~~~~~~e~~~v~~t~~v--~~gl~~~gm~~~~~~g~~rmgp-~  315 (344)
T 3jsk_A          239 NAPVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRGLDMQSAEDAIVNNTREI--VPGLIVGGMELSEIDGANRMGP-T  315 (344)
T ss_dssp             ECSEEEECCCSSSSSSCHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHTCEEE--ETTEEECGGGHHHHHTCEECCS-C
T ss_pred             EcCEEEECCCCCchhhHHHHHHHhhcCcccccCCCcccccccchhhhcccCceE--cCCEEEechhhHhhcCCCCCCc-c
Confidence            999999999976431 1    12222221001111111        12234444  7999999975432    1  11 1


Q ss_pred             HHHHHHHHHHHHHHHHHHHc
Q 017664          285 GYLAQKHALVTAKNLKKLMM  304 (368)
Q Consensus       285 ~~~a~~~g~~aa~~i~~~l~  304 (368)
                      .-.-..+|+.||+-|+..|.
T Consensus       316 fg~m~~sg~~~a~~~~~~~~  335 (344)
T 3jsk_A          316 FGAMALSGVKAAHEAIRVFD  335 (344)
T ss_dssp             CHHHHHHHHHHHHHHHHHHH
T ss_pred             cceeeecCHHHHHHHHHHHH
Confidence            23446788999999988774

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.08  E-value=1.2e-05  Score=71.86  Aligned_cols=96  Identities=21%  Similarity=0.163  Sum_probs=71.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc---c--------cccc----CchhHHHHHHHHHcCCcEEEecc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK---L--------LEFV----GSRASQIALDWLTSKKVEVILNQ  203 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~---~--------l~~~----~~~~~~~~~~~l~~~gv~i~~~~  203 (368)
                      ..+++|||+|+.|+.+|..+.+  .+.+|+++++...   .        .+.+    ...+...+.+.+++.|++++. .
T Consensus        16 ~~dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~   92 (319)
T 3cty_A           16 DFDVVIVGAGAAGFSAAVYAAR--SGFSVAILDKAVAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREG-V   92 (319)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSTTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEET-C
T ss_pred             CCcEEEECcCHHHHHHHHHHHh--CCCcEEEEeCCCCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEE-e
Confidence            4579999999999999999986  4789999998421   0        1111    124556677788889999988 6


Q ss_pred             eeeecccCCC--eEEcCCCcEEecCEEEEccCCCCCc
Q 017664          204 SVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       204 ~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~  238 (368)
                      .+..++.+++  .+.+ +++++.+|.+|+|+|..|..
T Consensus        93 ~v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~~~~~  128 (319)
T 3cty_A           93 EVRSIKKTQGGFDIET-NDDTYHAKYVIITTGTTHKH  128 (319)
T ss_dssp             CEEEEEEETTEEEEEE-SSSEEEEEEEEECCCEEECC
T ss_pred             eEEEEEEeCCEEEEEE-CCCEEEeCEEEECCCCCccc
Confidence            7887776554  5655 55689999999999987643

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.07  E-value=2.8e-06  Score=78.22  Aligned_cols=44  Identities=20%  Similarity=0.273  Sum_probs=38.1

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccc
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWAS   56 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~   56 (368)
                      +...+|++|||||++|+++|++|+ +|.+|+|+|+++.+|+.+..
T Consensus        26 ~~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~   70 (397)
T 3hdq_A           26 ESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYD   70 (397)
T ss_dssp             CCCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCC
T ss_pred             cCCCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccce
Confidence            445789999999999999999997 59999999999988866543

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=98.07  E-value=1.7e-06  Score=83.13  Aligned_cols=40  Identities=25%  Similarity=0.440  Sum_probs=36.0

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cC-CcEEEEcCCCceeeec
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SF-ADVVLIDEKEYFEITW   54 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g-~~v~lie~~~~~~~~~   54 (368)
                      +.+||+|||||++||+||+.|+ .| .+|+|+|+++.+|+..
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~   48 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRL   48 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCce
Confidence            4579999999999999999998 48 9999999999988654

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.07  E-value=2.4e-06  Score=79.47  Aligned_cols=38  Identities=21%  Similarity=0.415  Sum_probs=32.0

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCc-EEEEcCCCce
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFAD-VVLIDEKEYF   50 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~-v~lie~~~~~   50 (368)
                      |++++||+|||||++|+++|..|+ .|.+ |+|+|+.+..
T Consensus         1 M~~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~   40 (410)
T 3c96_A            1 MSEPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI   40 (410)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCc
Confidence            455789999999999999999998 4999 9999998753

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.04  E-value=4.8e-06  Score=78.72  Aligned_cols=99  Identities=10%  Similarity=0.023  Sum_probs=71.4

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCC---CeEEEEecCccccc-------c------------------------------
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPD---KKVILVHRGPKLLE-------F------------------------------  179 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~---~~v~~i~~~~~~l~-------~------------------------------  179 (368)
                      .+|+|||+|++|+.+|..|.+....   .+|+++++.+.+..       .                              
T Consensus        31 ~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~~~  110 (463)
T 3s5w_A           31 HDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLHKH  110 (463)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHHHT
T ss_pred             CCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhhhc
Confidence            3799999999999999999864212   79999998763210       0                              


Q ss_pred             --------------cCchhHHHHHHHHHcCCcEEEecceeeecccC---CC----eEEcCCCc----EEecCEEEEccCC
Q 017664          180 --------------VGSRASQIALDWLTSKKVEVILNQSVTLNTIS---DG----LIETSSGE----TIDTDCHFMCTGK  234 (368)
Q Consensus       180 --------------~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~---~~----~v~~~~g~----~i~~d~vi~a~G~  234 (368)
                                    ...++.+.+....++.+++++++++|..++.+   ++    .+.+.+|+    ++.+|.+|+|||.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~  190 (463)
T 3s5w_A          111 DRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGG  190 (463)
T ss_dssp             TCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCC
T ss_pred             CceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCC
Confidence                          00122344445556778999999999988765   33    45666665    8999999999998


Q ss_pred             CCCc
Q 017664          235 AMAS  238 (368)
Q Consensus       235 ~p~~  238 (368)
                      .|..
T Consensus       191 ~p~~  194 (463)
T 3s5w_A          191 TPRI  194 (463)
T ss_dssp             EECC
T ss_pred             CCCC
Confidence            7653

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.03  E-value=3.4e-06  Score=80.33  Aligned_cols=41  Identities=24%  Similarity=0.337  Sum_probs=36.4

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeee
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEIT   53 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~   53 (368)
                      +++.+||+|||||++||+||+.|++ |++|+|+|+++..|+.
T Consensus         8 ~~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~   49 (489)
T 2jae_A            8 VKGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGR   49 (489)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCc
Confidence            3457899999999999999999985 9999999999988764

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.01  E-value=3.8e-06  Score=80.33  Aligned_cols=42  Identities=26%  Similarity=0.330  Sum_probs=35.6

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeec
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITW   54 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~   54 (368)
                      |.+++||+|||||++||+||+.|++ |++|+|+|+++..|+..
T Consensus        10 ~~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~   52 (504)
T 1sez_A           10 HSSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKL   52 (504)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCce
Confidence            4567899999999999999999985 99999999999887654

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.01  E-value=3.9e-06  Score=80.09  Aligned_cols=53  Identities=4%  Similarity=-0.068  Sum_probs=45.3

Q ss_pred             hhHHHHHHHHHcCC-cEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCC
Q 017664          183 RASQIALDWLTSKK-VEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       183 ~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      .+.+.+.+.+++.| ++++++++|++|+.+++  .|.+.+|+++++|.||+|+|..
T Consensus       256 ~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~  311 (495)
T 2vvm_A          256 AFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLN  311 (495)
T ss_dssp             HHHHHHHHHHHTTTCEEEESSCCEEEEEECSSSEEEEETTCCEEEEEEEEECCCGG
T ss_pred             HHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHH
Confidence            56777888888888 99999999999987655  6778888889999999999964

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.00  E-value=4.2e-06  Score=76.42  Aligned_cols=36  Identities=28%  Similarity=0.326  Sum_probs=32.6

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      |.+++||+|||||++|+++|++|+ +|.+|+|+|++.
T Consensus         3 m~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~   39 (363)
T 1c0p_A            3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (363)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence            456789999999999999999997 599999999976

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=98.00  E-value=3.4e-06  Score=80.03  Aligned_cols=51  Identities=18%  Similarity=0.142  Sum_probs=42.5

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGK  234 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~  234 (368)
                      .+.+.+.+.+++.|++|+++++|++|+.+++   .|.+ ++.++++|.||+|++.
T Consensus       235 ~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~-~~~~~~ad~vv~a~p~  288 (477)
T 3nks_A          235 MLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSL-RDSSLEADHVISAIPA  288 (477)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEEC-SSCEEEESEEEECSCH
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEE-CCeEEEcCEEEECCCH
Confidence            6788888999999999999999999987654   4555 4557999999999875

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=98.00  E-value=4e-06  Score=79.56  Aligned_cols=42  Identities=29%  Similarity=0.425  Sum_probs=34.6

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeec
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITW   54 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~   54 (368)
                      ....+||+|||||++||+||+.|++ |++|+|+|+++..|+..
T Consensus        13 ~~~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~   55 (478)
T 2ivd_A           13 RTTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAV   55 (478)
T ss_dssp             ----CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTC
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCcee
Confidence            3456899999999999999999985 99999999999887543

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=97.98  E-value=5.2e-06  Score=78.34  Aligned_cols=96  Identities=21%  Similarity=0.266  Sum_probs=61.9

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeec-
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITD-   92 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   92 (368)
                      ..+++|||||++|+.+|..|+ .|.+|+++|+.+.+...       ..+.+.........+  .+++++.. .+..++. 
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~-------~~~~~~~~l~~~l~~--~Gv~i~~~~~V~~i~~~  237 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPT-------MDLEVSRAAERVFKK--QGLTIRTGVRVTAVVPE  237 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-------SCHHHHHHHHHHHHH--HTCEEECSCCEEEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccc-------cCHHHHHHHHHHHHH--CCCEEEECCEEEEEEEe
Confidence            468999999999999999997 59999999998764210       011110000000111  14555433 4444432 


Q ss_pred             -c--EEEecCCeEEEecEEEEecCCCCCCCC
Q 017664           93 -T--EVVTAGGQTFVYDYVVVATGHVESVPK  120 (368)
Q Consensus        93 -~--~v~~~~g~~~~~d~lvlAtG~~~~~p~  120 (368)
                       +  .+.+.++..+++|.||+|+|..|..+.
T Consensus       238 ~~~v~v~~~~g~~i~~D~vv~A~G~~p~~~~  268 (455)
T 2yqu_A          238 AKGARVELEGGEVLEADRVLVAVGRRPYTEG  268 (455)
T ss_dssp             TTEEEEEETTSCEEEESEEEECSCEEECCTT
T ss_pred             CCEEEEEECCCeEEEcCEEEECcCCCcCCCC
Confidence             2  345557888999999999999987654

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.98  E-value=1.2e-05  Score=76.75  Aligned_cols=97  Identities=13%  Similarity=0.164  Sum_probs=66.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc--ccc--------Cc-hhHHHHHHHH--HcCCcEEEeccee
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL--EFV--------GS-RASQIALDWL--TSKKVEVILNQSV  205 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l--~~~--------~~-~~~~~~~~~l--~~~gv~i~~~~~v  205 (368)
                      .++|+|||+|+.|+.+|..|.+  .+.+|++|++++.+.  |.+        ++ .+...+.+.+  ++.+++++.. .+
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~--~~~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~~-~v  118 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDT--KKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEA-EA  118 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCT--TTCEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHHTTCSSCEEEEEE-EE
T ss_pred             CCCEEEECCcHHHHHHHHHhhh--CCCcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHHHhhcCCeEEEEE-EE
Confidence            3589999999999999999874  478999999987642  111        11 1112233333  3457888765 56


Q ss_pred             eecccCCCeEEc--------------------CCCcEEecCEEEEccCCCCCc
Q 017664          206 TLNTISDGLIET--------------------SSGETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       206 ~~i~~~~~~v~~--------------------~~g~~i~~d~vi~a~G~~p~~  238 (368)
                      +.|..++..|.+                    .++.++++|.+|+|||..|+.
T Consensus       119 ~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~  171 (502)
T 4g6h_A          119 TSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNT  171 (502)
T ss_dssp             EEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECC
T ss_pred             EEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCccccc
Confidence            777665554432                    456789999999999998764

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=97.97  E-value=2.4e-06  Score=80.76  Aligned_cols=38  Identities=24%  Similarity=0.259  Sum_probs=33.4

Q ss_pred             cEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCC
Q 017664          197 VEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGK  234 (368)
Q Consensus       197 v~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~  234 (368)
                      ++++++++|++|+.+++  .|.+.+|+++++|.||+|++.
T Consensus       248 ~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vi~a~p~  287 (470)
T 3i6d_A          248 TKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPH  287 (470)
T ss_dssp             EEEECSCCEEEEEECSSSEEEEESSSCEEEESEEEECSCH
T ss_pred             CEEEeCCceEEEEEcCCeEEEEECCCCEEECCEEEECCCH
Confidence            79999999999987765  778889988999999999874

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=97.96  E-value=3.2e-06  Score=79.62  Aligned_cols=40  Identities=18%  Similarity=0.259  Sum_probs=35.6

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeec
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITW   54 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~   54 (368)
                      +++||+|||||++||+||.+|++ |++|+|+|+++..|+..
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~   44 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRT   44 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCce
Confidence            35799999999999999999984 99999999999887554

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=97.96  E-value=1.8e-05  Score=70.59  Aligned_cols=165  Identities=18%  Similarity=0.143  Sum_probs=100.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc--------------------------------------c
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF--------------------------------------V  180 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~--------------------------------------~  180 (368)
                      ..+|+|||+|++|+.+|..+.+..++.+|.++++.+.....                                      .
T Consensus        65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~g~~~~~~~  144 (326)
T 2gjc_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKH  144 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEECSSEEEESC
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccccCCCeEEEcc
Confidence            34799999999999999999875558899999986533100                                      0


Q ss_pred             CchhHHHHHHHHHc-CCcEEEecceeeecccC---C-C-----eEEc------C--------CCcEEec-----------
Q 017664          181 GSRASQIALDWLTS-KKVEVILNQSVTLNTIS---D-G-----LIET------S--------SGETIDT-----------  225 (368)
Q Consensus       181 ~~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~---~-~-----~v~~------~--------~g~~i~~-----------  225 (368)
                      ...+...+.+.+++ .|++++.++.+..+..+   + +     .+.+      .        ++.++.+           
T Consensus       145 ~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~  224 (326)
T 2gjc_A          145 AALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDL  224 (326)
T ss_dssp             HHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCS
T ss_pred             hHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeeccccccccc
Confidence            11233445566666 49999999999887654   2 2     2322      1        3457999           


Q ss_pred             ----CEEEEccCCCCC-chhhhccccccccCC--CC--c--------EEeCCCeeecCCCCeEEecccCC----CC--cc
Q 017664          226 ----DCHFMCTGKAMA-SSWLRETILKDSLDG--RG--R--------LMVDENLRVRGFKNVFAIGDITD----IP--EI  282 (368)
Q Consensus       226 ----d~vi~a~G~~p~-~~~~~~~~l~~~~~~--~g--~--------i~vd~~~~~~~~~~ifa~GD~~~----~~--~~  282 (368)
                          |.||.|||.... ..++......+....  .|  .        ..|+..-...-+|++|++|-.+.    .+  .|
T Consensus       225 ~~~~~~VV~ATG~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~g~  304 (326)
T 2gjc_A          225 SQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLNRMGP  304 (326)
T ss_dssp             STTCCEEEECCCCC--CCSHHHHHHHHHHSSCCCCCCCCBCHHHHHHHHHHHCEECTTSTTEEECTHHHHHHHTCCBCCS
T ss_pred             cccCCEEEECcCCCchHHHHHHhhccccccccccCceeccccccchhheeecCCCccccCCEEECChHHHHhcCCCCCCh
Confidence                999999997632 333333111000100  01  1        11222333124899999998652    21  11


Q ss_pred             chHHHHHHHHHHHHHHHHHHHc
Q 017664          283 KQGYLAQKHALVTAKNLKKLMM  304 (368)
Q Consensus       283 ~~~~~a~~~g~~aa~~i~~~l~  304 (368)
                       ..-...-+|+.||+.|+..|.
T Consensus       305 -~fg~m~~sg~~~a~~~~~~~~  325 (326)
T 2gjc_A          305 -TFGAMALSGVHAAEQILKHFA  325 (326)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHH
T ss_pred             -hhhhhhhhhHHHHHHHHHHhh
Confidence             223445778999999987663

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.94  E-value=1.1e-05  Score=74.42  Aligned_cols=99  Identities=12%  Similarity=0.040  Sum_probs=70.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc------c-c--CchhHH----HHHHHHHcCCcEEEeccee
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE------F-V--GSRASQ----IALDWLTSKKVEVILNQSV  205 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~------~-~--~~~~~~----~~~~~l~~~gv~i~~~~~v  205 (368)
                      ..+++|||+|+.|+.+|..+.+.....+|+++++++...+      . +  ......    ...+.+++.|++++.++.+
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v   83 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLAMAEPGAMAEQLNARILTHTRV   83 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCEECGGGGGGTTTTTCCHHHHEEECHHHHHHHTTCEEECSCCC
T ss_pred             CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCCCccCcccccHHHhCCCCHHHhhccCHHHHHHhCCcEEEeCCEE
Confidence            4679999999999999999986433467999987653211      0 1  011111    2345567889999999988


Q ss_pred             eecccCCCeEEcCCCcEEecCEEEEccCCCCCc
Q 017664          206 TLNTISDGLIETSSGETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       206 ~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~  238 (368)
                      ..+..++..+.+.++ ++++|.+|+|||.+|..
T Consensus        84 ~~i~~~~~~v~~~~~-~~~~d~lviAtG~~p~~  115 (384)
T 2v3a_A           84 TGIDPGHQRIWIGEE-EVRYRDLVLAWGAEPIR  115 (384)
T ss_dssp             CEEEGGGTEEEETTE-EEECSEEEECCCEEECC
T ss_pred             EEEECCCCEEEECCc-EEECCEEEEeCCCCcCC
Confidence            877765557777654 79999999999988754

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.94  E-value=1e-05  Score=76.40  Aligned_cols=92  Identities=12%  Similarity=0.044  Sum_probs=69.3

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc--------ccc--CchhHHHHHHHHHcCCcEEEecceeee
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL--------EFV--GSRASQIALDWLTSKKVEVILNQSVTL  207 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l--------~~~--~~~~~~~~~~~l~~~gv~i~~~~~v~~  207 (368)
                      ..++++|||+|++|+.+|..|.+..++.+|+++++.+.+.        |.+  ...+...+.+.+++.|++++.++.+. 
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~-   83 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVG-   83 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBT-
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEEe-
Confidence            3578999999999999999998764458999999887653        211  23556677788899999999987662 


Q ss_pred             cccCCCeEEcCCCcEEecCEEEEccCCCC
Q 017664          208 NTISDGLIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       208 i~~~~~~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                           ..+.+.+. ++.+|.+|+|||..|
T Consensus        84 -----~~V~~~~~-~~~~d~lVlAtGs~~  106 (460)
T 1cjc_A           84 -----RDVTVQEL-QDAYHAVVLSYGAED  106 (460)
T ss_dssp             -----TTBCHHHH-HHHSSEEEECCCCCE
T ss_pred             -----eEEEeccc-eEEcCEEEEecCcCC
Confidence                 12333333 478999999999874

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.93  E-value=8.1e-06  Score=76.89  Aligned_cols=88  Identities=18%  Similarity=0.151  Sum_probs=67.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc-------ccc--cCchhHHHHHHHHHcCCcEEEecceeeecc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL-------LEF--VGSRASQIALDWLTSKKVEVILNQSVTLNT  209 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~-------l~~--~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~  209 (368)
                      .++|+|||+|+.|+.+|..|.++  +.+|+++++.+.+       .|.  .+.++.....+.+++.|+++++++.+..  
T Consensus       122 ~~~V~IIGgGpAGl~aA~~L~~~--G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~--  197 (456)
T 2vdc_G          122 GLSVGVIGAGPAGLAAAEELRAK--GYEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNFEVGR--  197 (456)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHH--TCCEEEECSSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHHTTCEEETTCCBTT--
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCcEEEeCCEecc--
Confidence            57899999999999999999864  7899999988754       222  2445667777889999999999987631  


Q ss_pred             cCCCeEEcCCCcEEecCEEEEccCCC
Q 017664          210 ISDGLIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       210 ~~~~~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                          .+.++++ .+++|.+|+|||..
T Consensus       198 ----~v~~~~~-~~~~d~vvlAtG~~  218 (456)
T 2vdc_G          198 ----DASLPEL-RRKHVAVLVATGVY  218 (456)
T ss_dssp             ----TBCHHHH-HSSCSEEEECCCCC
T ss_pred             ----EEEhhHh-HhhCCEEEEecCCC
Confidence                1222233 35799999999986

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=97.92  E-value=7.1e-06  Score=75.78  Aligned_cols=34  Identities=29%  Similarity=0.472  Sum_probs=31.2

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEY   49 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~   49 (368)
                      ++||+|||||++|+++|..|++ |.+|+|+|+.+.
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   36 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            4799999999999999999985 999999999874

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=97.91  E-value=4.9e-06  Score=77.91  Aligned_cols=33  Identities=24%  Similarity=0.524  Sum_probs=30.2

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      ++||+||||||+|+++|..|+ +|++|+|+|+.+
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            479999999999999999998 599999999986

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=97.91  E-value=6.6e-06  Score=76.38  Aligned_cols=53  Identities=13%  Similarity=0.210  Sum_probs=41.0

Q ss_pred             chhHHHHHHHHHcCCcEEEecceee---------ecccCCC--eEEcCCCcEEecCEEEEccCCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVT---------LNTISDG--LIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~---------~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      ..+...+.+.+++.|++++.+++|+         .+..+++  .+.+.+| ++.+|.||+|+|..
T Consensus       172 ~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~~v~v~~~~g-~i~a~~VV~A~G~~  235 (405)
T 3c4n_A          172 GSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQIVVHETR-QIRAGVIIVAAGAA  235 (405)
T ss_dssp             HHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC-------CBCCE-EEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeCCeEEEEECCc-EEECCEEEECCCcc
Confidence            3567788888999999999999998         8876655  4566666 79999999999976

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=97.91  E-value=8.3e-06  Score=75.13  Aligned_cols=40  Identities=20%  Similarity=0.419  Sum_probs=35.7

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeecc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWA   55 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~   55 (368)
                      ++||+|||||++|+++|..|++ |++|+|+|+++..|+.+.
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~   43 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSY   43 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCccc
Confidence            4799999999999999999985 899999999998886543

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=97.91  E-value=7.3e-05  Score=72.65  Aligned_cols=94  Identities=19%  Similarity=0.188  Sum_probs=70.6

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc-cc-----------------------cc----------------
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK-LL-----------------------EF----------------  179 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~-~l-----------------------~~----------------  179 (368)
                      ..|+|||+|+.|+++|..+++  .+.+|.+++++.. +.                       ..                
T Consensus        29 yDVIVIGgG~AGl~AAlaLAr--~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l  106 (651)
T 3ces_A           29 FDVIIIGGGHAGTEAAMAAAR--MGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRIL  106 (651)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEE
T ss_pred             CCEEEECChHHHHHHHHHHHh--CCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhh
Confidence            479999999999999999985  5889999997631 10                       00                


Q ss_pred             --------------cC-chhHHHHHHHHHc-CCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCCCC
Q 017664          180 --------------VG-SRASQIALDWLTS-KKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       180 --------------~~-~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                                    .+ ..+...+.+.+++ .|++++ ++.|..+..+++   .|.+.+|+++.+|.||+|+|..+
T Consensus       107 ~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s  181 (651)
T 3ces_A          107 NASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFL  181 (651)
T ss_dssp             STTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTT
T ss_pred             hcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCc
Confidence                          00 1234556677777 699995 578888876555   57788888999999999999764

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=97.90  E-value=7.3e-06  Score=77.11  Aligned_cols=54  Identities=17%  Similarity=0.037  Sum_probs=46.2

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeeccc-CCC---eEEcCCCcEEecCEEEEccCCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTI-SDG---LIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~-~~~---~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      .++.+.+.+.+++.|++++++++|++|.. +++   .|++.+|++++||.||.++++.
T Consensus       256 ~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV  313 (475)
T ss_dssp             THHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence            47888999999999999999999999987 444   6888999899999999999988

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=97.90  E-value=8.8e-06  Score=76.25  Aligned_cols=56  Identities=14%  Similarity=-0.034  Sum_probs=45.8

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCCCe--EEcCCCcEEecCEEEEccCCCCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISDGL--IETSSGETIDTDCHFMCTGKAMA  237 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~--v~~~~g~~i~~d~vi~a~G~~p~  237 (368)
                      ..+.+.+.+.+++.|++++++++|++|..+++.  ....+|+++.+|.||+++|..+.
T Consensus       234 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~~g~~~~ad~VV~a~~~~~~  291 (433)
T 1d5t_A          234 GELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVPD  291 (433)
T ss_dssp             THHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEETTEEEECSEEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEEECCeEEECCEEEECCCCCcc
Confidence            477888888899999999999999999876652  22357788999999999998753

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=97.90  E-value=7.2e-06  Score=77.77  Aligned_cols=39  Identities=28%  Similarity=0.584  Sum_probs=34.5

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc-C--CcEEEEcCCCceeee
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS-F--ADVVLIDEKEYFEIT   53 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~-g--~~v~lie~~~~~~~~   53 (368)
                      +++||+|||||++||++|++|++ |  .+|+|+|+++..|+.
T Consensus         3 ~~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~   44 (475)
T 3lov_A            3 SSKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGK   44 (475)
T ss_dssp             CSCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTT
T ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCce
Confidence            35899999999999999999985 7  999999999887653

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=97.89  E-value=8.3e-06  Score=73.19  Aligned_cols=37  Identities=16%  Similarity=0.317  Sum_probs=32.9

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc---CCcEEEEcCCCcee
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYFE   51 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~~~   51 (368)
                      ..+||+|||||++|+++|..|++   |.+|+|||+++..+
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~G  117 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPG  117 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCC
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccC
Confidence            36899999999999999999974   99999999997654

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=97.89  E-value=8.6e-06  Score=77.45  Aligned_cols=43  Identities=21%  Similarity=0.114  Sum_probs=37.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhc-C-CcEEEEcCCCceeeeccc
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQS-F-ADVVLIDEKEYFEITWAS   56 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~-g-~~v~lie~~~~~~~~~~~   56 (368)
                      ++++||+|||||++||++|++|++ | .+|+|+|+++.+|+.+..
T Consensus         7 ~~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~   51 (484)
T 4dsg_A            7 LLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRS   51 (484)
T ss_dssp             CCSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCE
T ss_pred             ccCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeee
Confidence            356899999999999999999984 6 799999999988866543

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=97.88  E-value=6.3e-05  Score=69.32  Aligned_cols=96  Identities=16%  Similarity=0.180  Sum_probs=72.1

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc----------c-c------------------------------
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL----------L-E------------------------------  178 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~----------l-~------------------------------  178 (368)
                      .+|+|||+|++|+.+|..|.+.  +.+|+++++.+..          + +                              
T Consensus         3 ~dV~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~   80 (394)
T 1k0i_A            3 TQVAIIGAGPSGLLLGQLLHKA--GIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFA   80 (394)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHH--TCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEET
T ss_pred             ccEEEECCCHHHHHHHHHHHHC--CCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEEC
Confidence            4699999999999999999864  7899999976531          0 0                              


Q ss_pred             -------------c------cCchhHHHHHHHHHcCCcEEEecceeeecccCC-C--eEEc-CCCc--EEecCEEEEccC
Q 017664          179 -------------F------VGSRASQIALDWLTSKKVEVILNQSVTLNTISD-G--LIET-SSGE--TIDTDCHFMCTG  233 (368)
Q Consensus       179 -------------~------~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~--~v~~-~~g~--~i~~d~vi~a~G  233 (368)
                                   .      ....+.+.+.+.+++.|++++.+++|+.++.++ +  .+.+ .+|+  ++++|+||.|.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~AdG  160 (394)
T 1k0i_A           81 GQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDG  160 (394)
T ss_dssp             TEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCC
T ss_pred             CceEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEECCC
Confidence                         0      001234455666777899999999999887653 3  6666 6886  799999999999


Q ss_pred             CCCC
Q 017664          234 KAMA  237 (368)
Q Consensus       234 ~~p~  237 (368)
                      ....
T Consensus       161 ~~S~  164 (394)
T 1k0i_A          161 FHGI  164 (394)
T ss_dssp             TTCS
T ss_pred             CCcH
Confidence            7643

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.88  E-value=9e-06  Score=77.60  Aligned_cols=43  Identities=23%  Similarity=0.305  Sum_probs=37.3

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeec
Q 017664           12 GLVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITW   54 (368)
Q Consensus        12 ~~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~   54 (368)
                      .+..++||+|||||++||++|..|++ |.+|+|+|+++..|+..
T Consensus        29 ~~~~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~   72 (498)
T 2iid_A           29 ATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRV   72 (498)
T ss_dssp             CCSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTC
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCce
Confidence            34457899999999999999999985 99999999999887654

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=97.88  E-value=5.8e-05  Score=69.97  Aligned_cols=35  Identities=23%  Similarity=0.412  Sum_probs=31.1

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      .+|+|||+|.+|+-+|..|+++.++.+|+++++..
T Consensus        37 ~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~   71 (405)
T 3c4n_A           37 FDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGG   71 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSC
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            47999999999999999999866689999999763

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=97.87  E-value=9.7e-06  Score=74.19  Aligned_cols=39  Identities=15%  Similarity=0.301  Sum_probs=34.6

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeec
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITW   54 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~   54 (368)
                      ++|++|||||++|+++|.+|++ |.+|+|+|+++..|+..
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~   40 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNA   40 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGG
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcce
Confidence            3689999999999999999985 99999999998877553

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.87  E-value=1.3e-05  Score=75.73  Aligned_cols=96  Identities=25%  Similarity=0.257  Sum_probs=61.9

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeec-
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITD-   92 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   92 (368)
                      ..+++|||||+.|+.+|..|+ .|.+|+|+|+.+.+...   +    .+.+.........+  .+++++.. .+..++. 
T Consensus       169 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~---~----~~~~~~~l~~~l~~--~gV~i~~~~~v~~i~~~  239 (464)
T 2eq6_A          169 PKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQ---G----DPETAALLRRALEK--EGIRVRTKTKAVGYEKK  239 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT---S----CHHHHHHHHHHHHH--TTCEEECSEEEEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccc---c----CHHHHHHHHHHHHh--cCCEEEcCCEEEEEEEe
Confidence            478999999999999999997 49999999998764311   0    11110000000111  25666543 4445542 


Q ss_pred             -c--EEEec-C--Ce--EEEecEEEEecCCCCCCCC
Q 017664           93 -T--EVVTA-G--GQ--TFVYDYVVVATGHVESVPK  120 (368)
Q Consensus        93 -~--~v~~~-~--g~--~~~~d~lvlAtG~~~~~p~  120 (368)
                       +  .+.+. +  |+  .+++|.|++|+|..|..+.
T Consensus       240 ~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~  275 (464)
T 2eq6_A          240 KDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEG  275 (464)
T ss_dssp             TTEEEEEEEETTCCSCEEEEESEEEECSCEEESCTT
T ss_pred             CCEEEEEEeecCCCceeEEEcCEEEECCCcccCCCC
Confidence             2  34444 5  65  7999999999999988765

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.85  E-value=7.6e-05  Score=71.22  Aligned_cols=97  Identities=23%  Similarity=0.257  Sum_probs=69.6

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCC-CCeEEEEecCcccc---------c--------------------cc---------
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFP-DKKVILVHRGPKLL---------E--------------------FV---------  180 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~-~~~v~~i~~~~~~l---------~--------------------~~---------  180 (368)
                      .+++|||+|+.|+.+|..+++..+ +.+|+++++.+ +.         |                    .+         
T Consensus         3 ~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   81 (499)
T 1xdi_A            3 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKI   81 (499)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CB
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCCCcc
Confidence            469999999999999999997655 88999999874 10         0                    00         


Q ss_pred             Cc-h-----------hHHHHHHHHHcCCcEEEecceeeecccC----CC--eEEcCCCc--EEecCEEEEccCCCCCc
Q 017664          181 GS-R-----------ASQIALDWLTSKKVEVILNQSVTLNTIS----DG--LIETSSGE--TIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       181 ~~-~-----------~~~~~~~~l~~~gv~i~~~~~v~~i~~~----~~--~v~~~~g~--~i~~d~vi~a~G~~p~~  238 (368)
                      +. .           +...+.+.+++.|++++.++ +..+...    ++  .+.+.+|+  ++.+|.+|+|||..|..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p~~  158 (499)
T 1xdi_A           82 SLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGR-GELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRI  158 (499)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESE-EEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCC
Confidence            00 0           11224566788999999986 5555542    13  56667776  79999999999988754

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=97.84  E-value=0.00012  Score=70.90  Aligned_cols=96  Identities=18%  Similarity=0.191  Sum_probs=71.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc-cc-----------------------cc---------------
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK-LL-----------------------EF---------------  179 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~-~l-----------------------~~---------------  179 (368)
                      ...|+|||+|+.|+++|..+++  .+.+|.+++++.. +.                       ..               
T Consensus        27 ~yDVIVIGgG~AGl~AAlalAr--~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~  104 (637)
T 2zxi_A           27 EFDVVVIGGGHAGIEAALAAAR--MGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKM  104 (637)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHH--CCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceee
Confidence            3579999999999999999986  4889999997631 10                       00               


Q ss_pred             --------c-------C-chhHHHHHHHHHc-CCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCCCCC
Q 017664          180 --------V-------G-SRASQIALDWLTS-KKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGKAMA  237 (368)
Q Consensus       180 --------~-------~-~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~~p~  237 (368)
                              .       + ..+...+.+.+++ .|++++ ++.|+.+..+++   .|.+.+|+++.+|.||+|||..++
T Consensus       105 l~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~s~  181 (637)
T 2zxi_A          105 LNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLN  181 (637)
T ss_dssp             ESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTCBT
T ss_pred             cccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCCcc
Confidence                    0       0 1234556677777 599995 678888776655   578889999999999999997654

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=97.83  E-value=5.9e-05  Score=72.76  Aligned_cols=94  Identities=15%  Similarity=0.195  Sum_probs=69.5

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc--------c-------------ccC----------------c
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL--------E-------------FVG----------------S  182 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l--------~-------------~~~----------------~  182 (368)
                      .+|+|||+|++|+.+|..|.+.  +.+|+++++++.+.        |             .+.                +
T Consensus        17 ~dVvIIGaG~aGl~aA~~L~~~--G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~   94 (542)
T 1w4x_A           17 VDVLVVGAGFSGLYALYRLREL--GRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQP   94 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHH
T ss_pred             CCEEEECccHHHHHHHHHHHhC--CCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHH
Confidence            4799999999999999999863  78999999875321        0             001                1


Q ss_pred             hhHHHHHHHHHcCC--cEEEecceeeecccCCC----eEEcCCCcEEecCEEEEccCCC
Q 017664          183 RASQIALDWLTSKK--VEVILNQSVTLNTISDG----LIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       183 ~~~~~~~~~l~~~g--v~i~~~~~v~~i~~~~~----~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      ++.+.+....++.+  ++++++++|.+++.+++    .|.+.+|+++.+|.||+|+|..
T Consensus        95 ~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~  153 (542)
T 1w4x_A           95 EILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQL  153 (542)
T ss_dssp             HHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSC
T ss_pred             HHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCC
Confidence            23344445556655  67889999998876432    6788889899999999999953

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.83  E-value=9.1e-06  Score=76.59  Aligned_cols=90  Identities=16%  Similarity=0.076  Sum_probs=68.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHhh-hCC----CCeEEEEecCcccc--------c--ccCchhHHHHHHHHHcCCcEEEecc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAV-DFP----DKKVILVHRGPKLL--------E--FVGSRASQIALDWLTSKKVEVILNQ  203 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~-~~~----~~~v~~i~~~~~~l--------~--~~~~~~~~~~~~~l~~~gv~i~~~~  203 (368)
                      .++|+|||+|+.|+.+|..|.+ ..+    +.+|+++++.+.+.        |  ....++...+.+.+++.|++++.+.
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~~~v   82 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV   82 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCCCEEEeeE
Confidence            4689999999999999999986 433    78999999886542        1  1223567778888899999999885


Q ss_pred             eeeecccCCCeEEcCCCcEEecCEEEEccCCC
Q 017664          204 SVTLNTISDGLIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       204 ~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      .+      +..+.+.++ ++.+|.+|+|||..
T Consensus        83 ~v------~~~v~~~~~-~~~~d~lViAtG~~  107 (456)
T 1lqt_A           83 VV------GEHVQPGEL-SERYDAVIYAVGAQ  107 (456)
T ss_dssp             CB------TTTBCHHHH-HHHSSEEEECCCCC
T ss_pred             EE------CCEEEECCC-eEeCCEEEEeeCCC
Confidence            43      123445455 47899999999986

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.83  E-value=1.5e-05  Score=75.13  Aligned_cols=96  Identities=16%  Similarity=0.138  Sum_probs=63.0

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeec-
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITD-   92 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   92 (368)
                      ..+++|||||+.|+.+|..|+ .|.+|+|+|+.+.+...       ..+...........+  .+++++.. .+..++. 
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-------~~~~~~~~l~~~l~~--~Gv~i~~~~~v~~i~~~  237 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-------FDPMISETLVEVMNA--EGPQLHTNAIPKAVVKN  237 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-------SCHHHHHHHHHHHHH--HSCEEECSCCEEEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhh-------hhHHHHHHHHHHHHH--CCCEEEeCCEEEEEEEe
Confidence            468999999999999999997 49999999998754211       011110000000011  14555443 3444432 


Q ss_pred             ----cEEEecCCeEEEecEEEEecCCCCCCCC
Q 017664           93 ----TEVVTAGGQTFVYDYVVVATGHVESVPK  120 (368)
Q Consensus        93 ----~~v~~~~g~~~~~d~lvlAtG~~~~~p~  120 (368)
                          ..+.+.+|+.+++|.+++|+|..|+.+.
T Consensus       238 ~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~~~  269 (450)
T 1ges_A          238 TDGSLTLELEDGRSETVDCLIWAIGREPANDN  269 (450)
T ss_dssp             TTSCEEEEETTSCEEEESEEEECSCEEESCTT
T ss_pred             CCcEEEEEECCCcEEEcCEEEECCCCCcCCCC
Confidence                1567778888999999999999988764

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.81  E-value=1.4e-05  Score=76.77  Aligned_cols=97  Identities=18%  Similarity=0.138  Sum_probs=62.5

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEee--
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSIT--   91 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--   91 (368)
                      +.+++|||||+.|+-.|..+++ |.+|+|+++...+..    +    +++..........+  .++.+... .+..+.  
T Consensus       223 P~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~~----~----D~ei~~~l~~~l~~--~gi~~~~~~~v~~~~~~  292 (542)
T 4b1b_A          223 PGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLRG----F----DQQCAVKVKLYMEE--QGVMFKNGILPKKLTKM  292 (542)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSSTT----S----CHHHHHHHHHHHHH--TTCEEEETCCEEEEEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCeEEEecccccccc----c----chhHHHHHHHHHHh--hcceeecceEEEEEEec
Confidence            4689999999999999999985 999999998653321    0    11111110001111  24555433 222222  


Q ss_pred             cc--EEEecCCeEEEecEEEEecCCCCCCCCch
Q 017664           92 DT--EVVTAGGQTFVYDYVVVATGHVESVPKSR  122 (368)
Q Consensus        92 ~~--~v~~~~g~~~~~d~lvlAtG~~~~~p~~~  122 (368)
                      ..  .+.+.++..+.+|.|++|+|.+|+...+.
T Consensus       293 ~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~~L~  325 (542)
T 4b1b_A          293 DDKILVEFSDKTSELYDTVLYAIGRKGDIDGLN  325 (542)
T ss_dssp             TTEEEEEETTSCEEEESEEEECSCEEESCGGGC
T ss_pred             CCeEEEEEcCCCeEEEEEEEEcccccCCccccC
Confidence            12  56677888899999999999999887654

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.80  E-value=1.2e-05  Score=75.91  Aligned_cols=96  Identities=18%  Similarity=0.238  Sum_probs=60.2

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeecc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITDT   93 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   93 (368)
                      ..+++|||||+.|+.+|..|++ |.+|+|+|+.+.+...   +    .+...........+  .+++++.. .+..++..
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~---~----~~~~~~~l~~~l~~--~gv~i~~~~~v~~i~~~  241 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT---Y----DSELTAPVAESLKK--LGIALHLGHSVEGYENG  241 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT---S----CHHHHHHHHHHHHH--HTCEEETTCEEEEEETT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccc---c----CHHHHHHHHHHHHH--CCCEEEECCEEEEEEeC
Confidence            4689999999999999999984 9999999998865311   0    11110000000010  14555432 44444432


Q ss_pred             EEEe--cCC--eEEEecEEEEecCCCCCCCC
Q 017664           94 EVVT--AGG--QTFVYDYVVVATGHVESVPK  120 (368)
Q Consensus        94 ~v~~--~~g--~~~~~d~lvlAtG~~~~~p~  120 (368)
                      .+..  .+|  ..+++|.|++|+|.+|+.+.
T Consensus       242 ~v~v~~~~G~~~~i~~D~vv~a~G~~p~~~~  272 (458)
T 1lvl_A          242 CLLANDGKGGQLRLEADRVLVAVGRRPRTKG  272 (458)
T ss_dssp             EEEEECSSSCCCEECCSCEEECCCEEECCSS
T ss_pred             CEEEEECCCceEEEECCEEEECcCCCcCCCC
Confidence            1222  245  67999999999999987764

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.80  E-value=4.6e-05  Score=72.05  Aligned_cols=96  Identities=16%  Similarity=0.198  Sum_probs=68.2

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-------------------------------cCc-h----
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF-------------------------------VGS-R----  183 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~-------------------------------~~~-~----  183 (368)
                      .+++|||+|+.|+.+|..+.+  .+.+|+++++.+.+...                               ++. .    
T Consensus         5 ~DVvVIGgG~aGl~aA~~l~~--~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (466)
T 3l8k_A            5 YDVVVIGAGGAGYHGAFRLAK--AKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQDR   82 (466)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHh--CCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHHH
Confidence            469999999999999999986  48899999966543110                               000 0    


Q ss_pred             ------hH--HHHHHHHHcCCcEEEecceeeecccCCCeEEcCCCcE--EecCEEEEccCCCCCc
Q 017664          184 ------AS--QIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGET--IDTDCHFMCTGKAMAS  238 (368)
Q Consensus       184 ------~~--~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~--i~~d~vi~a~G~~p~~  238 (368)
                            +.  ..+.+.+++.|++++.+ .+..+..+.-.+.+.+|++  +.+|.+|+|||..|..
T Consensus        83 ~~~~~~l~~~~~~~~~~~~~~v~~~~g-~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~p~~  146 (466)
T 3l8k_A           83 KDYVQELRFKQHKRNMSQYETLTFYKG-YVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAK  146 (466)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTEEEESE-EEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECC
T ss_pred             HHhheeccccchHHHHHHhCCCEEEEe-EEEEecCCeEEEEcCCCcEEEEecCEEEECCCCCccC
Confidence                  00  33444556789999887 4555553322677788888  9999999999987654

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=97.80  E-value=1.1e-05  Score=78.05  Aligned_cols=35  Identities=20%  Similarity=0.421  Sum_probs=31.7

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCce
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYF   50 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~   50 (368)
                      .+||+||||||+|+++|..|+ .|.+|+|||+.+..
T Consensus        26 ~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~   61 (549)
T 2r0c_A           26 ETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGT   61 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            479999999999999999998 59999999998753

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.78  E-value=5.1e-05  Score=71.79  Aligned_cols=96  Identities=19%  Similarity=0.193  Sum_probs=66.9

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc---------c---------------------c--------cC
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL---------E---------------------F--------VG  181 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l---------~---------------------~--------~~  181 (368)
                      .+++|||+|+.|+.+|..+++  .+.+|+++++.+.+.         |                     .        .+
T Consensus         3 ~dvvIIGgG~aGl~aA~~l~~--~g~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~   80 (468)
T 2qae_A            3 YDVVVIGGGPGGYVASIKAAQ--LGMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVTMD   80 (468)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCEEC
T ss_pred             CCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCccC
Confidence            479999999999999999986  478999999885331         0                     0        00


Q ss_pred             -ch-----------hHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCC--cEEecCEEEEccCCCCCc
Q 017664          182 -SR-----------ASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSG--ETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       182 -~~-----------~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g--~~i~~d~vi~a~G~~p~~  238 (368)
                       +.           +...+.+.+++.|++++.++.+. +....-.+.+.+|  +++.+|.+|+|||..|..
T Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~-i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~  150 (468)
T 2qae_A           81 SAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSF-ETAHSIRVNGLDGKQEMLETKKTIIATGSEPTE  150 (468)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEE-EETTEEEEEETTSCEEEEEEEEEEECCCEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE-eeCCEEEEEecCCceEEEEcCEEEECCCCCcCC
Confidence             00           11112456677899999887543 3321115666777  689999999999988754

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=97.78  E-value=1.2e-05  Score=78.22  Aligned_cols=36  Identities=22%  Similarity=0.346  Sum_probs=32.0

Q ss_pred             CCcEEEECCChHHHHHHHHhh-c------CCcEEEEcCCCcee
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-S------FADVVLIDEKEYFE   51 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~------g~~v~lie~~~~~~   51 (368)
                      .+||+||||||||+++|..|+ .      |.+|+|||+.+..+
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g   77 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIG   77 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCC
Confidence            479999999999999999997 5      89999999987543

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.77  E-value=1.9e-05  Score=74.61  Aligned_cols=96  Identities=19%  Similarity=0.275  Sum_probs=62.6

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeec-
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITD-   92 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   92 (368)
                      ..+++|||||+.|+.+|..|+ .|.+|+++++.+.+...   +    .+...........  ..+++++.. .+..++. 
T Consensus       166 ~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~---~----~~~~~~~l~~~l~--~~gv~i~~~~~v~~i~~~  236 (463)
T 2r9z_A          166 PKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQ---F----DPLLSATLAENMH--AQGIETHLEFAVAALERD  236 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT---S----CHHHHHHHHHHHH--HTTCEEESSCCEEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccc---c----CHHHHHHHHHHHH--HCCCEEEeCCEEEEEEEe
Confidence            468999999999999999997 49999999998754211   0    1111000000001  124555433 3444432 


Q ss_pred             ---cEEEecCCe-EEEecEEEEecCCCCCCCC
Q 017664           93 ---TEVVTAGGQ-TFVYDYVVVATGHVESVPK  120 (368)
Q Consensus        93 ---~~v~~~~g~-~~~~d~lvlAtG~~~~~p~  120 (368)
                         ..+.+.+|+ .+.+|.|++|+|..|+.+.
T Consensus       237 ~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~~  268 (463)
T 2r9z_A          237 AQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRD  268 (463)
T ss_dssp             TTEEEEEETTCCEEEEESEEEECSCEEESCTT
T ss_pred             CCeEEEEEeCCcEEEEcCEEEECCCCCcCCCC
Confidence               256677888 8999999999999987754

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.77  E-value=0.00011  Score=69.50  Aligned_cols=97  Identities=18%  Similarity=0.200  Sum_probs=66.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc--------------------------ccccc----------C-
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK--------------------------LLEFV----------G-  181 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~--------------------------~l~~~----------~-  181 (368)
                      ..+++|||+|+.|+.+|..+++  .+.+|++++++..                          ..+..          + 
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~--~g~~V~lie~~~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~   81 (467)
T 1zk7_A            4 PVQVAVIGSGGAAMAAALKAVE--QGAQVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR   81 (467)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSTTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCCCCH
T ss_pred             cCCEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCCCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCccCH
Confidence            4689999999999999999986  4789999998730                          01111          0 


Q ss_pred             chhHH-------H-----HHHHHHcC-CcEEEecceeeecccCCCeEEcCCC--cEEecCEEEEccCCCCCc
Q 017664          182 SRASQ-------I-----ALDWLTSK-KVEVILNQSVTLNTISDGLIETSSG--ETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       182 ~~~~~-------~-----~~~~l~~~-gv~i~~~~~v~~i~~~~~~v~~~~g--~~i~~d~vi~a~G~~p~~  238 (368)
                      ..+..       .     ..+.+++. |++++.+. +..+....-.+.+.+|  +++++|.+|+|||.+|..
T Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~-~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~  152 (467)
T 1zk7_A           82 SKLLAQQQARVDELRHAKYEGILGGNPAITVVHGE-ARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAV  152 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEE-EEEEETTEEEEEETTSSEEEEECSEEEECCCEEECC
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEE-EEEccCCEEEEEeCCCceEEEEeCEEEEeCCCCCCC
Confidence            01111       1     12445666 99999875 5544432225667777  689999999999987754

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.76  E-value=6.4e-05  Score=71.13  Aligned_cols=97  Identities=21%  Similarity=0.209  Sum_probs=67.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-------------------------------------cC
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF-------------------------------------VG  181 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~-------------------------------------~~  181 (368)
                      ..+++|||+|+.|+.+|..+.+.  +.+|+++++.+.+...                                     .+
T Consensus         6 ~~dvvIIGaG~aGl~aA~~l~~~--g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~   83 (470)
T 1dxl_A            6 ENDVVIIGGGPGGYVAAIKAAQL--GFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEID   83 (470)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHH--TCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEEC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCccC
Confidence            45799999999999999999864  7899999988533100                                     00


Q ss_pred             c-h-----------hHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCC--cEEecCEEEEccCCCCCc
Q 017664          182 S-R-----------ASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSG--ETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       182 ~-~-----------~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g--~~i~~d~vi~a~G~~p~~  238 (368)
                      . .           +...+.+.+++.|++++.++.+. +..+.-.+.+.+|  +++.+|.+|+|||..|..
T Consensus        84 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~  153 (470)
T 1dxl_A           84 LAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF-VSPSEISVDTIEGENTVVKGKHIIIATGSDVKS  153 (470)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEE-EETTEEEECCSSSCCEEEECSEEEECCCEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-ecCCEEEEEeCCCceEEEEcCEEEECCCCCCCC
Confidence            0 0           11113455677899999988654 3221115556677  689999999999988754

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=97.74  E-value=0.00018  Score=69.85  Aligned_cols=96  Identities=17%  Similarity=0.260  Sum_probs=70.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc-cc-----------------------cc---------------
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK-LL-----------------------EF---------------  179 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~-~l-----------------------~~---------------  179 (368)
                      ...|+|||+|..|+++|..+++  .+.+|.++++... +.                       +.               
T Consensus        21 ~yDVIVIGgG~AGl~AAlaLAr--~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~   98 (641)
T 3cp8_A           21 MYDVIVVGAGHAGCEAALAVAR--GGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRM   98 (641)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEE
T ss_pred             cCCEEEECccHHHHHHHHHHHH--CCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhh
Confidence            4589999999999999999986  4889999997631 10                       00               


Q ss_pred             ---------------cC-chhHHHHHHHHHc-CCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCCCCC
Q 017664          180 ---------------VG-SRASQIALDWLTS-KKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGKAMA  237 (368)
Q Consensus       180 ---------------~~-~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~~p~  237 (368)
                                     .+ ..+...+.+.+++ .|++++. ..|..+..+++   .|.+.+|+++.+|.||+|+|..++
T Consensus        99 l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~-~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~s~  175 (641)
T 3cp8_A           99 LNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQ-DTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFLN  175 (641)
T ss_dssp             ECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEE-CCEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTCBT
T ss_pred             cccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEe-eEEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCCCC
Confidence                           00 0234556667777 4999965 47887766555   477888989999999999997644

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.74  E-value=1.8e-05  Score=72.69  Aligned_cols=34  Identities=21%  Similarity=0.473  Sum_probs=30.9

Q ss_pred             CcEEEECCChHHHHHHHHhh-c--CCcEEEEcCCCce
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-S--FADVVLIDEKEYF   50 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~--g~~v~lie~~~~~   50 (368)
                      +||+||||||+|+++|..|+ .  |.+|+|+|+++..
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            48999999999999999997 5  9999999998765

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=97.74  E-value=2e-05  Score=77.54  Aligned_cols=35  Identities=23%  Similarity=0.397  Sum_probs=31.5

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc--CCcEEEEcCCCc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS--FADVVLIDEKEY   49 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~--g~~v~lie~~~~   49 (368)
                      .++||+||||||+||++|..|++  |.+|+|||+.+.
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~   67 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEG   67 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            45799999999999999999975  999999999865

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.73  E-value=2.7e-05  Score=74.19  Aligned_cols=96  Identities=19%  Similarity=0.186  Sum_probs=67.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc----------ccCc---hhHHHHHHHHHcCCcEEEeccee
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE----------FVGS---RASQIALDWLTSKKVEVILNQSV  205 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~----------~~~~---~~~~~~~~~l~~~gv~i~~~~~v  205 (368)
                      ..+|+|||+|+.|+.+|..|.++   .+|+++++++.+..          .++.   ++...+.+.+ +.|++++.++.+
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~---~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v  183 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY---LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSA  183 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT---CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEE
T ss_pred             cCCEEEECccHHHHHHHHHHHhc---CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEE
Confidence            45799999999999999999863   89999998765411          0111   1222223333 569999999999


Q ss_pred             eecccCCCe--EEc-CCCc--EEecCEEEEccCCCCCc
Q 017664          206 TLNTISDGL--IET-SSGE--TIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       206 ~~i~~~~~~--v~~-~~g~--~i~~d~vi~a~G~~p~~  238 (368)
                      ..+..++..  +.. .+++  ++++|.+|+|||..|..
T Consensus       184 ~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~  221 (493)
T 1y56_A          184 LGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDST  221 (493)
T ss_dssp             CCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEECC
T ss_pred             EEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCccC
Confidence            887766552  222 4454  68999999999987654

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=97.72  E-value=2.1e-05  Score=70.16  Aligned_cols=36  Identities=25%  Similarity=0.354  Sum_probs=32.1

Q ss_pred             CCcEEEECCChHHHHHHHHhh-c--CCcEEEEcCCCcee
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-S--FADVVLIDEKEYFE   51 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~--g~~v~lie~~~~~~   51 (368)
                      .+||+|||||++|+++|..|+ .  |++|+|+|+++..+
T Consensus        65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~g  103 (326)
T 2gjc_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG  103 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccc
Confidence            459999999999999999997 4  89999999987664

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.72  E-value=0.00014  Score=68.41  Aligned_cols=95  Identities=21%  Similarity=0.229  Sum_probs=66.7

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc---------c--------------------c-------cCc-
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL---------E--------------------F-------VGS-  182 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l---------~--------------------~-------~~~-  182 (368)
                      .+++|||+|+.|+.+|..+++  .+.+|+++++.. +.         |                    .       .+. 
T Consensus         4 ~dvvIIGgG~aGl~aA~~l~~--~g~~V~lie~~~-~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~   80 (455)
T 1ebd_A            4 TETLVVGAGPGGYVAAIRAAQ--LGQKVTIVEKGN-LGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFA   80 (455)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHH
T ss_pred             CCEEEECCCHHHHHHHHHHHh--CCCeEEEEECCC-CCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccCHH
Confidence            479999999999999999986  378999999862 10         0                    0       000 


Q ss_pred             h-----------hHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCC-cEEecCEEEEccCCCCCc
Q 017664          183 R-----------ASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSG-ETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       183 ~-----------~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g-~~i~~d~vi~a~G~~p~~  238 (368)
                      .           +...+.+.+++.|++++.++.+. +....-.+.+.+| +++++|.+|+|||.+|..
T Consensus        81 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-id~~~v~V~~~~G~~~i~~d~lViATGs~p~~  147 (455)
T 1ebd_A           81 KVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYF-VDANTVRVVNGDSAQTYTFKNAIIATGSRPIE  147 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEE-EETTEEEEEETTEEEEEECSEEEECCCEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE-ccCCeEEEEeCCCcEEEEeCEEEEecCCCCCC
Confidence            0           11223456778899999988653 3221115666777 689999999999988754

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=97.71  E-value=2.2e-05  Score=77.27  Aligned_cols=34  Identities=26%  Similarity=0.510  Sum_probs=31.0

Q ss_pred             CCcEEEECCChHHHHHHHHhh---c--CCcEEEEcCCCc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ---S--FADVVLIDEKEY   49 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~---~--g~~v~lie~~~~   49 (368)
                      .+||||||||+|||+||..|+   +  |.+|+||||.+.
T Consensus        22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~   60 (643)
T 1jnr_A           22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV   60 (643)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred             cCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCC
Confidence            589999999999999999987   3  999999999874

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=97.71  E-value=2.1e-05  Score=75.83  Aligned_cols=53  Identities=19%  Similarity=0.390  Sum_probs=43.5

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCC-C---eEEcCCCcEEecCEEEEccCCCC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISD-G---LIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~---~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                      .+...+.+.+++.|++++.+ +|+.+..++ +   .+.+.+|+++++|.||.|+|...
T Consensus       166 ~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s  222 (538)
T 2aqj_A          166 LVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRG  222 (538)
T ss_dssp             HHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGC
T ss_pred             HHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCch
Confidence            56677888888899999999 788887643 3   57788888899999999999764

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.68  E-value=0.00021  Score=67.82  Aligned_cols=98  Identities=20%  Similarity=0.219  Sum_probs=67.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc--------------------------cc--ccC------c--
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL--------------------------LE--FVG------S--  182 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~--------------------------l~--~~~------~--  182 (368)
                      ..+++|||+|+.|+.+|..+.+  .+.+|+++++++.-                          ..  .+.      +  
T Consensus        11 ~~dVvVIGgG~aGl~aA~~l~~--~g~~V~liE~~~~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~   88 (479)
T 2hqm_A           11 HYDYLVIGGGSGGVASARRAAS--YGAKTLLVEAKALGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDKEH   88 (479)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TSCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSGGG
T ss_pred             cCCEEEEcCCHHHHHHHHHHHH--CCCcEEEEeCCCcCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCccccccccccc
Confidence            3579999999999999999986  48899999986410                          00  000      0  


Q ss_pred             -----------------hhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCCc--EEecCEEEEccCCCCCch
Q 017664          183 -----------------RASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGE--TIDTDCHFMCTGKAMASS  239 (368)
Q Consensus       183 -----------------~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~--~i~~d~vi~a~G~~p~~~  239 (368)
                                       .+...+.+.+++.|++++.++ +..+....-.+.+.+|+  ++.+|.+|+|||.+|..+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p  163 (479)
T 2hqm_A           89 LTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGW-ARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFP  163 (479)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-EEECTTSCEEEEESSSCCEEEEEEEEEECCCEEECCC
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCC
Confidence                             011123345677899999885 55443221156666776  899999999999887543

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.67  E-value=2.7e-05  Score=73.97  Aligned_cols=96  Identities=18%  Similarity=0.185  Sum_probs=61.3

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeecc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITDT   93 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   93 (368)
                      ..+++|||||+.|+-+|..|+ .|.+|+|+|+.+.+...       ..+...........+  .+++++.. .+..++..
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-------~~~~~~~~l~~~l~~--~gV~i~~~~~v~~i~~~  255 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-------ADRDLVKVWQKQNEY--RFDNIMVNTKTVAVEPK  255 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-------SCHHHHHHHHHHHGG--GEEEEECSCEEEEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc-------cCHHHHHHHHHHHHh--cCCEEEECCEEEEEEEc
Confidence            578999999999999999997 49999999998764311       111111000000111  25555533 44444321


Q ss_pred             ----EEEecC----CeEEEecEEEEecCCCCCCCC
Q 017664           94 ----EVVTAG----GQTFVYDYVVVATGHVESVPK  120 (368)
Q Consensus        94 ----~v~~~~----g~~~~~d~lvlAtG~~~~~p~  120 (368)
                          .+.+.+    ++.+.+|.+++|+|..|+.+.
T Consensus       256 ~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~~  290 (482)
T 1ojt_A          256 EDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKL  290 (482)
T ss_dssp             TTEEEEEEESSSCCSSCEEESCEEECCCEEECGGG
T ss_pred             CCeEEEEEeccCCCceEEEcCEEEECcCCCcCCCC
Confidence                455555    677899999999999987543

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.67  E-value=6.5e-05  Score=71.69  Aligned_cols=96  Identities=18%  Similarity=0.190  Sum_probs=62.8

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeec-
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITD-   92 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   92 (368)
                      ..+++|||||+.|+-+|..|++ |.+|+++++.+.+...       .++...........+  .+++++.. .+..++. 
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-------~d~~~~~~l~~~l~~--~gv~i~~~~~v~~i~~~  246 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-------FDESVINVLENDMKK--NNINIVTFADVVEIKKV  246 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT-------SCHHHHHHHHHHHHH--TTCEEECSCCEEEEEES
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCcc-------cchhhHHHHHHHHHh--CCCEEEECCEEEEEEEc
Confidence            5689999999999999999984 9999999998764311       011111000000111  25555533 3444432 


Q ss_pred             --c--EEEecCCeE-EEecEEEEecCCCCCCCC
Q 017664           93 --T--EVVTAGGQT-FVYDYVVVATGHVESVPK  120 (368)
Q Consensus        93 --~--~v~~~~g~~-~~~d~lvlAtG~~~~~p~  120 (368)
                        .  .+.+.+|+. +++|.+++|+|..|+.+.
T Consensus       247 ~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~~~  279 (500)
T 1onf_A          247 SDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTEN  279 (500)
T ss_dssp             STTCEEEEETTSCEEEEESEEEECCCBCCTTTT
T ss_pred             CCceEEEEECCCcEEEECCEEEECCCCCcCCCC
Confidence              1  566778877 999999999999987643

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.66  E-value=3.4e-05  Score=79.97  Aligned_cols=92  Identities=12%  Similarity=0.179  Sum_probs=68.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCC-eEEEEecCcccc-------c--ccCchhHHHHHHHHHcCCcEEEecceeeec
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDK-KVILVHRGPKLL-------E--FVGSRASQIALDWLTSKKVEVILNQSVTLN  208 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~-~v~~i~~~~~~l-------~--~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  208 (368)
                      .++|+|||+|+.|+.+|..|++.  +. +|+++++.+.+.       +  ..+.+..+...+.+++.||++++++.+.. 
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~--G~~~Vtv~E~~~~~GG~~~~~ip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-  263 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARL--GYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSE-  263 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHT--TCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBST-
T ss_pred             CCEEEEECccHHHHHHHHHHHhc--CCCcEEEEeCCCCCCccccccCCcccCCHHHHHHHHHHHHHCCcEEEcccEecc-
Confidence            56899999999999999999863  66 799999876542       1  12334556667888999999999987642 


Q ss_pred             ccCCCeEEcCCCcEEecCEEEEccCC-CCC
Q 017664          209 TISDGLIETSSGETIDTDCHFMCTGK-AMA  237 (368)
Q Consensus       209 ~~~~~~v~~~~g~~i~~d~vi~a~G~-~p~  237 (368)
                          ..+.+++++++.+|.+|+|||. .|.
T Consensus       264 ----~~v~~~~~~~~~~d~vvlAtGa~~p~  289 (1025)
T 1gte_A          264 ----NEITLNTLKEEGYKAAFIGIGLPEPK  289 (1025)
T ss_dssp             ----TSBCHHHHHHTTCCEEEECCCCCEEC
T ss_pred             ----ceEEhhhcCccCCCEEEEecCCCCCC
Confidence                1344445556789999999998 454

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=97.66  E-value=2.2e-05  Score=71.19  Aligned_cols=44  Identities=20%  Similarity=0.132  Sum_probs=34.5

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCCcEEecCEEEEccCCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      ..+...+.+.+++.|++++. ++|+.++..+         .+.+|.||+|+|..
T Consensus       142 ~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~---------~~~a~~VV~A~G~~  185 (351)
T 3g3e_A          142 KNYLQWLTERLTERGVKFFQ-RKVESFEEVA---------REGADVIVNCTGVW  185 (351)
T ss_dssp             HHHHHHHHHHHHHTTCEEEE-CCCCCHHHHH---------HTTCSEEEECCGGG
T ss_pred             HHHHHHHHHHHHHCCCEEEE-EEeCCHHHhh---------cCCCCEEEECCCcC
Confidence            46677888889999999998 8887665321         26799999999965

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=97.65  E-value=0.00015  Score=66.97  Aligned_cols=97  Identities=15%  Similarity=0.192  Sum_probs=68.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-------cCc-h---------------------------
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF-------VGS-R---------------------------  183 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~-------~~~-~---------------------------  183 (368)
                      ..+|+|||+|++|+.+|..|.+  .+.+|+++++.+.....       ..+ .                           
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~  103 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQ--NGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIAD  103 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHT--TTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEEC
T ss_pred             CCCEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEEC
Confidence            4689999999999999999985  58899999987532110       000 0                           


Q ss_pred             ----------------------hHHHHHHHHHc--CCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCCC
Q 017664          184 ----------------------ASQIALDWLTS--KKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMA  237 (368)
Q Consensus       184 ----------------------~~~~~~~~l~~--~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~  237 (368)
                                            -...+.+.|.+  .+++++.+++|+.++.+++  .+.+.+|+++++|+||.|.|....
T Consensus       104 ~~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  183 (398)
T 2xdo_A          104 EKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSK  183 (398)
T ss_dssp             SSSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSCTTCS
T ss_pred             CCCCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCCcchh
Confidence                                  00112222222  1357888999998877655  677888988999999999997643

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.64  E-value=3.8e-05  Score=75.92  Aligned_cols=43  Identities=30%  Similarity=0.371  Sum_probs=37.3

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeecc
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWA   55 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~   55 (368)
                      ..+.+||+|||||++||++|+.|. +|++|+|+|+.+..|+...
T Consensus       104 ~~~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~  147 (662)
T 2z3y_A          104 TKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVA  147 (662)
T ss_dssp             SSCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCC
T ss_pred             ccCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccc
Confidence            345789999999999999999997 5999999999998876543

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=97.63  E-value=3.3e-05  Score=74.38  Aligned_cols=36  Identities=22%  Similarity=0.396  Sum_probs=32.4

Q ss_pred             CCCcEEEECCChHHHHHHHHhhcCCcEEEEcCCCce
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYF   50 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~g~~v~lie~~~~~   50 (368)
                      ..+||||||||+||++||..|++|.+|+|+||.+..
T Consensus         7 ~~~DVvVVG~G~AGl~aAl~la~G~~V~vlEk~~~~   42 (540)
T 1chu_A            7 HSCDVLIIGSGAAGLSLALRLADQHQVIVLSKGPVT   42 (540)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTTTSCEEEECSSCTT
T ss_pred             CCCCEEEECccHHHHHHHHHHhcCCcEEEEECCCCC
Confidence            358999999999999999999779999999998754

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.62  E-value=4.3e-05  Score=69.32  Aligned_cols=47  Identities=15%  Similarity=0.242  Sum_probs=40.4

Q ss_pred             CCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCCCC
Q 017664          259 DENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNK  308 (368)
Q Consensus       259 d~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~  308 (368)
                      +++|+++..+|+|.+|...+...   -..|..||.+|+.|+++.+.|+++
T Consensus       320 ~~tle~k~~~~Lf~AGqi~G~~G---y~eAaa~Gl~AG~naa~~~~g~~p  366 (443)
T 3g5s_A          320 GETLEFREAEGLYAAGVLAGVEG---YLESAATGFLAGLNAARKALGLPP  366 (443)
T ss_dssp             CTTSEETTEEEEEECGGGGTBCS---HHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             ChhceecCCCCEEECccccccHH---HHHHHHhHHHHHHHHHHHhcCCCC
Confidence            36899988999999999998732   358999999999999999999864

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=97.62  E-value=3.8e-05  Score=76.90  Aligned_cols=40  Identities=23%  Similarity=0.297  Sum_probs=35.2

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceee
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEI   52 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~   52 (368)
                      ..+.+||+|||||++|+++|..|+ .|++|+|+|+.+..|+
T Consensus       333 ~~~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~gg  373 (776)
T 4gut_A          333 DYHNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGG  373 (776)
T ss_dssp             GGTSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCT
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceec
Confidence            345689999999999999999998 4999999999887765

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.61  E-value=3.7e-05  Score=72.79  Aligned_cols=41  Identities=17%  Similarity=0.313  Sum_probs=34.8

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc-CC-cEEEEcCCCceeeecc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS-FA-DVVLIDEKEYFEITWA   55 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~-g~-~v~lie~~~~~~~~~~   55 (368)
                      +.+||+|||||++|+++|+.|++ |. +|+|+|+++..|+.+.
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~   45 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMH   45 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCcee
Confidence            46799999999999999999984 88 8999999998876543

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.61  E-value=3.1e-05  Score=74.45  Aligned_cols=53  Identities=23%  Similarity=0.225  Sum_probs=42.2

Q ss_pred             hhHHHHHHHHHc-CCcEEEecceeeecccCC-C---eEEcCCCcEEecCEEEEccCCCC
Q 017664          183 RASQIALDWLTS-KKVEVILNQSVTLNTISD-G---LIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       183 ~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~-~---~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                      .+...+.+.+++ .|++++.+ +|+.++.++ +   .+.+.+|+++++|.||.|+|...
T Consensus       176 ~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S  233 (526)
T 2pyx_A          176 KFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKS  233 (526)
T ss_dssp             HHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGC
T ss_pred             HHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcch
Confidence            456777788888 89999999 588887653 3   56677877899999999999864

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.61  E-value=5.9e-05  Score=71.86  Aligned_cols=95  Identities=16%  Similarity=0.214  Sum_probs=63.2

Q ss_pred             CCcEEEECCChHHHHHHHHhh-c---CCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEe
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-S---FADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSI   90 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~---g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   90 (368)
                      ..+++|||+|+.|+-+|..|+ .   |.+|+++++.+.+...       ..+...........  ..+++++.. .+..+
T Consensus       191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~-------~d~~~~~~l~~~l~--~~GV~i~~~~~v~~i  261 (495)
T 2wpf_A          191 PRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRG-------FDETIREEVTKQLT--ANGIEIMTNENPAKV  261 (495)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTT-------SCHHHHHHHHHHHH--HTTCEEEESCCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccc-------cCHHHHHHHHHHHH--hCCCEEEeCCEEEEE
Confidence            468999999999999999886 5   9999999998764211       11111100000011  126666544 44444


Q ss_pred             ec-----cEEEecCCeEEEecEEEEecCCCCCCC
Q 017664           91 TD-----TEVVTAGGQTFVYDYVVVATGHVESVP  119 (368)
Q Consensus        91 ~~-----~~v~~~~g~~~~~d~lvlAtG~~~~~p  119 (368)
                      +.     ..+.+.+|+.+++|.+++|+|..|+.+
T Consensus       262 ~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~  295 (495)
T 2wpf_A          262 SLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTN  295 (495)
T ss_dssp             EECTTSCEEEEETTSCEEEESEEEECSCEEECCG
T ss_pred             EEcCCceEEEEECCCcEEEcCEEEECCCCccccc
Confidence            32     156777888899999999999998764

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.61  E-value=6.5e-05  Score=71.49  Aligned_cols=96  Identities=18%  Similarity=0.205  Sum_probs=63.4

Q ss_pred             CCcEEEECCChHHHHHHHHhh-c---CCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEe
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-S---FADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSI   90 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~---g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   90 (368)
                      ..+++|||+|+.|+-+|..|+ .   |.+|+++++.+.+...   +    .+...........  ..+++++.. .+..+
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~---~----d~~~~~~l~~~l~--~~GV~i~~~~~v~~i  257 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG---F----DSELRKQLTEQLR--ANGINVRTHENPAKV  257 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT---S----CHHHHHHHHHHHH--HTTEEEEETCCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccc---c----CHHHHHHHHHHHH--hCCCEEEeCCEEEEE
Confidence            468999999999999999886 5   9999999998764311   0    1111100000011  126666544 44444


Q ss_pred             ec-----cEEEecCCeEEEecEEEEecCCCCCCCC
Q 017664           91 TD-----TEVVTAGGQTFVYDYVVVATGHVESVPK  120 (368)
Q Consensus        91 ~~-----~~v~~~~g~~~~~d~lvlAtG~~~~~p~  120 (368)
                      ..     ..+.+.+|+.+.+|.|++|+|..|+...
T Consensus       258 ~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~  292 (490)
T 1fec_A          258 TKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQT  292 (490)
T ss_dssp             EECTTSCEEEEETTSCEEEESEEEECSCEEESCTT
T ss_pred             EEcCCCEEEEEECCCcEEEcCEEEEccCCCcCccc
Confidence            32     1566778888999999999999987653

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=97.61  E-value=0.00048  Score=66.96  Aligned_cols=97  Identities=22%  Similarity=0.227  Sum_probs=68.8

Q ss_pred             CeEEEEcCchhHHHHHHHHhhh----CCCCeEEEEecCccccc-------------------------------------
Q 017664          140 NSVLIVGGGPTGVELAGEIAVD----FPDKKVILVHRGPKLLE-------------------------------------  178 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~----~~~~~v~~i~~~~~~l~-------------------------------------  178 (368)
                      ..|+|||+|++|+-+|..|++.    .++.+|.++++.+.+..                                     
T Consensus        36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~~~  115 (584)
T 2gmh_A           36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFG  115 (584)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechhhee
Confidence            4689999999999888888763    22678888886532100                                     


Q ss_pred             --------cc---Cc--------------hhHHHHHHHHHcCCcEEEecceeeecccCC-C---eEEcC------CC---
Q 017664          179 --------FV---GS--------------RASQIALDWLTSKKVEVILNQSVTLNTISD-G---LIETS------SG---  220 (368)
Q Consensus       179 --------~~---~~--------------~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~---~v~~~------~g---  220 (368)
                              .+   +.              .+.+.+.+.+++.|++++.++.+.++..++ +   .|.+.      +|   
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~  195 (584)
T 2gmh_A          116 ILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPK  195 (584)
T ss_dssp             EECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEE
T ss_pred             eeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcc
Confidence                    00   00              234556677788899999999999887654 3   35554      33   


Q ss_pred             ------cEEecCEEEEccCCCC
Q 017664          221 ------ETIDTDCHFMCTGKAM  236 (368)
Q Consensus       221 ------~~i~~d~vi~a~G~~p  236 (368)
                            .++.+|+||.|.|...
T Consensus       196 ~~~~~g~~i~Ad~VV~AdG~~S  217 (584)
T 2gmh_A          196 TTFERGLELHAKVTIFAEGCHG  217 (584)
T ss_dssp             EEEECCCEEECSEEEECCCTTC
T ss_pred             cccCCceEEECCEEEEeeCCCc
Confidence                  6899999999999764

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.60  E-value=0.00029  Score=66.74  Aligned_cols=92  Identities=21%  Similarity=0.222  Sum_probs=65.4

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc----------------------------cc--c--------C
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL----------------------------EF--V--------G  181 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l----------------------------~~--~--------~  181 (368)
                      .+++|||+|+.|+.+|..+++  .+.+|+++++++.+.                            ..  .        +
T Consensus         6 ~dVvIIGgG~aGl~aA~~l~~--~G~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~   83 (478)
T 1v59_A            6 HDVVIIGGGPAGYVAAIKAAQ--LGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKIN   83 (478)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEEC
T ss_pred             CCEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCccC
Confidence            479999999999999999986  378999999854321                            00  0        0


Q ss_pred             c-h-----------hHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCC--cE------EecCEEEEccCCCC
Q 017664          182 S-R-----------ASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSG--ET------IDTDCHFMCTGKAM  236 (368)
Q Consensus       182 ~-~-----------~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g--~~------i~~d~vi~a~G~~p  236 (368)
                      . .           +...+.+.+++.||+++.++.+..   +++  .+.+.+|  ++      +.+|.+|+|||..|
T Consensus        84 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~---~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p  157 (478)
T 1v59_A           84 VANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFE---DETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEV  157 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEES---SSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc---cCCeEEEEecCCCcccccccceEEeCEEEECcCCCC
Confidence            0 0           111134566788999999987642   333  5666676  56      99999999999886

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.60  E-value=0.00048  Score=65.50  Aligned_cols=93  Identities=16%  Similarity=0.254  Sum_probs=65.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc----------------------------cc---------C
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE----------------------------FV---------G  181 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~----------------------------~~---------~  181 (368)
                      ..+++|||+|+.|+.+|..+++  .+.+|+++++++.+..                            .+         +
T Consensus        25 ~~dVvVIGgG~aGl~aA~~la~--~G~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  102 (491)
T 3urh_A           25 AYDLIVIGSGPGGYVCAIKAAQ--LGMKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPKLN  102 (491)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCCEEC
T ss_pred             cCCEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCCccC
Confidence            3689999999999999999986  4889999998654310                            00         0


Q ss_pred             ------------chhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCC--cEEecCEEEEccCCCC
Q 017664          182 ------------SRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSG--ETIDTDCHFMCTGKAM  236 (368)
Q Consensus       182 ------------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g--~~i~~d~vi~a~G~~p  236 (368)
                                  ..+...+...+++.+++++.+....   .+.+  .+.+.+|  +++.+|.+|+|||..|
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~---~~~~~~~v~~~~g~~~~~~~d~lViATGs~p  170 (491)
T 3urh_A          103 LQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKV---LGQGKVSVTNEKGEEQVLEAKNVVIATGSDV  170 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEE---CSSSEEEEECTTSCEEEEECSEEEECCCEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ecCCEEEEEeCCCceEEEEeCEEEEccCCCC
Confidence                        0011223445677899998877432   2233  5667777  5799999999999876

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.59  E-value=0.00018  Score=68.10  Aligned_cols=96  Identities=18%  Similarity=0.214  Sum_probs=66.3

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc--------------------------------------cC
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF--------------------------------------VG  181 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~--------------------------------------~~  181 (368)
                      .+++|||+|+.|+.+|..+.+  .+.+|+++++.+.+...                                      .+
T Consensus         7 ~dvvIIGgG~aGl~aA~~l~~--~g~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~   84 (474)
T 1zmd_A            7 ADVTVIGSGPGGYVAAIKAAQ--LGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEVRLN   84 (474)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCEEEC
T ss_pred             CCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCCccC
Confidence            479999999999999999986  37899999988632100                                      00


Q ss_pred             -ch-----------hHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCC-C-cEEecCEEEEccCCCCCc
Q 017664          182 -SR-----------ASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSS-G-ETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       182 -~~-----------~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~-g-~~i~~d~vi~a~G~~p~~  238 (368)
                       +.           +...+.+.+++.|++++.++.+. +....-.+.+.+ + +++.+|.+|+|||.+|..
T Consensus        85 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~  154 (474)
T 1zmd_A           85 LDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKI-TGKNQVTATKADGGTQVIDTKNILIATGSEVTP  154 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEE-EETTEEEEECTTSCEEEEEEEEEEECCCEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE-ecCCEEEEEecCCCcEEEEeCEEEECCCCCCCC
Confidence             00           11113456778899999887532 321111566666 4 579999999999988754

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=97.59  E-value=5.2e-05  Score=76.49  Aligned_cols=42  Identities=29%  Similarity=0.361  Sum_probs=36.7

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeec
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITW   54 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~   54 (368)
                      ....++|+|||||++||++|+.|. +|++|+|+|+.+.+|+..
T Consensus       275 ~~~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~~  317 (852)
T 2xag_A          275 TKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRV  317 (852)
T ss_dssp             SSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCCce
Confidence            345689999999999999999998 599999999999887653

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.58  E-value=0.00014  Score=68.76  Aligned_cols=93  Identities=17%  Similarity=0.164  Sum_probs=66.2

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc---------cc---------------------------cCc-
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL---------EF---------------------------VGS-  182 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l---------~~---------------------------~~~-  182 (368)
                      .+++|||+|+.|+.+|..+++  .+.+|+++++.. +.         |.                           .+. 
T Consensus         4 ~dvvIIGaG~aGl~aA~~l~~--~G~~V~liE~~~-~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~~~   80 (464)
T 2a8x_A            4 YDVVVLGAGPGGYVAAIRAAQ--LGLSTAIVEPKY-WGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDYG   80 (464)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEECHH
T ss_pred             CCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCC-CCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccCHH
Confidence            369999999999999999986  478999999862 10         00                           000 


Q ss_pred             -----------hhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCC--cEEecCEEEEccCCCCCc
Q 017664          183 -----------RASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSG--ETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       183 -----------~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g--~~i~~d~vi~a~G~~p~~  238 (368)
                                 .+...+.+.+++.|++++.++.+. +  +++  .+.+.+|  +++.+|.+|+|+|..|..
T Consensus        81 ~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~-i--d~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~  148 (464)
T 2a8x_A           81 IAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTF-A--DANTLLVDLNDGGTESVTFDNAIIATGSSTRL  148 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEE-S--SSSEEEEEETTSCCEEEEEEEEEECCCEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-e--cCCeEEEEeCCCceEEEEcCEEEECCCCCCCC
Confidence                       011123456778899999988653 2  333  5666777  689999999999988753

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=97.55  E-value=3.7e-05  Score=74.77  Aligned_cols=35  Identities=29%  Similarity=0.233  Sum_probs=31.7

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCce
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYF   50 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~   50 (368)
                      .+||||||||+||++||..|+ +|.+|+|+||.+..
T Consensus         7 ~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~   42 (588)
T 2wdq_A            7 EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPT   42 (588)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            579999999999999999998 49999999998653

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.53  E-value=0.00018  Score=71.18  Aligned_cols=85  Identities=19%  Similarity=0.250  Sum_probs=63.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc---------cccC--chhHHHHHHHHHcCCcEEEecceeee
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL---------EFVG--SRASQIALDWLTSKKVEVILNQSVTL  207 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l---------~~~~--~~~~~~~~~~l~~~gv~i~~~~~v~~  207 (368)
                      .++++|||+|+.|+.+|..+.+  .+.+|+++++++.+.         +...  .+....+.+.+++.|++++.++.+..
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~--~g~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~  450 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAA--RGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA  450 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcEecH
Confidence            3689999999999999999985  578999999876542         1111  12334566777888999999987642


Q ss_pred             cccCCCeEEcCCCcEE-ecCEEEEccCCCCCc
Q 017664          208 NTISDGLIETSSGETI-DTDCHFMCTGKAMAS  238 (368)
Q Consensus       208 i~~~~~~v~~~~g~~i-~~d~vi~a~G~~p~~  238 (368)
                      .             .+ .+|.+|+|||.+|..
T Consensus       451 ~-------------~~~~~d~lviAtG~~p~~  469 (671)
T 1ps9_A          451 D-------------QLQAFDETILASGIVPRT  469 (671)
T ss_dssp             S-------------SSCCSSEEEECCCEEECC
T ss_pred             H-------------HhhcCCEEEEccCCCcCC
Confidence            1             13 899999999988764

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=97.52  E-value=3.9e-05  Score=73.43  Aligned_cols=53  Identities=17%  Similarity=0.245  Sum_probs=43.5

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCC-C---eEEcCCCcEEecCEEEEccCCCC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISD-G---LIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~---~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                      .+...+.+.+++.|++++.+ +|+.++.++ +   .+.+.+|+++++|.||.|+|...
T Consensus       174 ~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S  230 (511)
T 2weu_A          174 EVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRG  230 (511)
T ss_dssp             HHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGC
T ss_pred             HHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcch
Confidence            56677778888899999999 898887643 3   57788888899999999999763

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.51  E-value=0.00036  Score=66.90  Aligned_cols=94  Identities=16%  Similarity=0.213  Sum_probs=66.9

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc---------------------------------ccc------
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL---------------------------------EFV------  180 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l---------------------------------~~~------  180 (368)
                      .+++|||+|+.|+.+|..+++  .+.+|+++++++.+.                                 +..      
T Consensus        44 ~dVvIIGgG~aGl~aA~~l~~--~G~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~  121 (523)
T 1mo9_A           44 YDAIFIGGGAAGRFGSAYLRA--MGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVG  121 (523)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCCC
T ss_pred             CCEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHHhhhhh
Confidence            579999999999999999986  378999999887321                                 000      


Q ss_pred             CchhHHHH----H---HHH-----HcCCcEEEecceeeecccCCCeEEcCCCcEEecCEEEEccCCCCCc
Q 017664          181 GSRASQIA----L---DWL-----TSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       181 ~~~~~~~~----~---~~l-----~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~  238 (368)
                      ...+...+    .   +.+     ++.|+++++...+..+..  ..+.+. ++++.+|.+|+|||.+|..
T Consensus       122 ~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~~v~~~-g~~~~~d~lViATGs~p~~  188 (523)
T 1mo9_A          122 IKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDN--HTVEAA-GKVFKAKNLILAVGAGPGT  188 (523)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEET--TEEEET-TEEEEBSCEEECCCEECCC
T ss_pred             HHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeC--CEEEEC-CEEEEeCEEEECCCCCCCC
Confidence            01111222    2   455     778999986666665543  356665 6789999999999988754

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=97.51  E-value=6.9e-05  Score=72.67  Aligned_cols=55  Identities=5%  Similarity=-0.052  Sum_probs=42.2

Q ss_pred             CchhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcC---CC--cEEecCEEEEccCCC
Q 017664          181 GSRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETS---SG--ETIDTDCHFMCTGKA  235 (368)
Q Consensus       181 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~---~g--~~i~~d~vi~a~G~~  235 (368)
                      +..+...+.+.+++.|++++++++|+.+..+++   .+++.   +|  .++.+|.||+|+|..
T Consensus       187 ~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~w  249 (571)
T 2rgh_A          187 DARLVIDNIKKAAEDGAYLVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPW  249 (571)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGG
T ss_pred             hHHHHHHHHHHHHHcCCeEEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChh
Confidence            345666777888899999999999999877655   35432   33  379999999999965

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.50  E-value=0.00028  Score=66.89  Aligned_cols=95  Identities=23%  Similarity=0.295  Sum_probs=65.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc-----------------------------c-------cC-
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE-----------------------------F-------VG-  181 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~-----------------------------~-------~~-  181 (368)
                      ..+++|||+|+.|+.+|..+.+  .+.+|+++++.. +..                             .       ++ 
T Consensus        20 ~~dVvIIGgG~aGl~aA~~la~--~G~~V~liE~~~-~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~   96 (478)
T 3dk9_A           20 SYDYLVIGGGSGGLASARRAAE--LGARAAVVESHK-LGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNW   96 (478)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCCCH
T ss_pred             CCCEEEECCCHHHHHHHHHHHh--CCCeEEEEecCC-CCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCccCH
Confidence            4689999999999999999986  488999999763 100                             0       00 


Q ss_pred             -----------chhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCCcEEecCEEEEccCCCCCc
Q 017664          182 -----------SRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       182 -----------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~  238 (368)
                                 ..+...+...+++.|++++.+.. ..+......+. .+++++.+|.+|+|||.+|..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~-~~~~~~~~~v~-~~g~~~~~d~lviAtG~~p~~  162 (478)
T 3dk9_A           97 RVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHA-AFTSDPKPTIE-VSGKKYTAPHILIATGGMPST  162 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCE-EECSCSSCEEE-ETTEEEECSCEEECCCEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEE-EEeeCCeEEEE-ECCEEEEeeEEEEccCCCCCC
Confidence                       01122334556778999998763 32222222455 566789999999999987754

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=97.49  E-value=5.4e-05  Score=73.95  Aligned_cols=35  Identities=17%  Similarity=0.188  Sum_probs=31.7

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      ..+||||||||+|||+||..|+ +|.+|+||||...
T Consensus        17 ~~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~   52 (621)
T 2h88_A           17 HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFP   52 (621)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCG
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            4579999999999999999998 5999999999864

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=97.49  E-value=8.8e-05  Score=72.94  Aligned_cols=46  Identities=9%  Similarity=0.070  Sum_probs=34.2

Q ss_pred             CCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCC
Q 017664          260 ENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGR  306 (368)
Q Consensus       260 ~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~  306 (368)
                      .+++| +.|++||+|||+.......+..+.-+|++++.++..++...
T Consensus       446 ~~~~t-~v~gl~a~Ge~~~~~~hg~~~~sl~~g~~ag~~a~~~~~~~  491 (662)
T 3gyx_A          446 YNRMT-TVEGLWTCADGVGASGHKFSSGSHAEGRIVGKQMVRWYLDH  491 (662)
T ss_dssp             CTTBC-SSBTEECCSSSBCSCCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCCC-ccCCeEeCccccccccCccHhHHHHHHHHHHHHHHHHHhhC
Confidence            56677 79999999999854332235667778999999988887554

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.49  E-value=4e-05  Score=75.68  Aligned_cols=34  Identities=24%  Similarity=0.366  Sum_probs=30.7

Q ss_pred             CCcEEEECCChHHHHHHHHhhc------CCcEEEEcCCCc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS------FADVVLIDEKEY   49 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~------g~~v~lie~~~~   49 (368)
                      ++||+||||||+||++|..|++      |.+|+|||+.+.
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~   47 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   47 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCC
Confidence            5799999999999999999865      999999998764

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=97.48  E-value=8.6e-05  Score=70.53  Aligned_cols=96  Identities=23%  Similarity=0.286  Sum_probs=63.3

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEE-eEEEEeecc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVV-STAVSITDT   93 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   93 (368)
                      ..+++|||+|+.|+.+|..|+ .|.+|+++++.+.+...   +    .+.+.........+  .+++++. ..+..+...
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~---~----~~~~~~~l~~~l~~--~Gv~i~~~~~V~~i~~~  261 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRN---F----DYDLRQLLNDAMVA--KGISIIYEATVSQVQST  261 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT---S----CHHHHHHHHHHHHH--HTCEEESSCCEEEEEEC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccccc---c----CHHHHHHHHHHHHH--CCCEEEeCCEEEEEEee
Confidence            568999999999999999887 49999999998754211   0    11110000000011  1555554 244444432


Q ss_pred             ----EEEecCCeEEEecEEEEecCCCCCCCC
Q 017664           94 ----EVVTAGGQTFVYDYVVVATGHVESVPK  120 (368)
Q Consensus        94 ----~v~~~~g~~~~~d~lvlAtG~~~~~p~  120 (368)
                          .+.+.+|+.+.+|.+++|+|..|..+.
T Consensus       262 ~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~~~  292 (484)
T 3o0h_A          262 ENCYNVVLTNGQTICADRVMLATGRVPNTTG  292 (484)
T ss_dssp             SSSEEEEETTSCEEEESEEEECCCEEECCTT
T ss_pred             CCEEEEEECCCcEEEcCEEEEeeCCCcCCCC
Confidence                577778888999999999999987654

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=97.48  E-value=7e-05  Score=73.66  Aligned_cols=35  Identities=23%  Similarity=0.262  Sum_probs=31.7

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEY   49 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~   49 (368)
                      ..+||||||||.|||+||..|++ |.+|+||||.+.
T Consensus         4 ~~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~   39 (660)
T 2bs2_A            4 QYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPV   39 (660)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCG
T ss_pred             ccccEEEECchHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            35799999999999999999984 999999999865

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=97.44  E-value=7.6e-05  Score=72.77  Aligned_cols=51  Identities=14%  Similarity=0.183  Sum_probs=39.0

Q ss_pred             CCcEEeCCCeeecCCCCeEEecccCC--CCc-----cchHHHHHHHHHHHHHHHHHHHc
Q 017664          253 RGRLMVDENLRVRGFKNVFAIGDITD--IPE-----IKQGYLAQKHALVTAKNLKKLMM  304 (368)
Q Consensus       253 ~g~i~vd~~~~~~~~~~ifa~GD~~~--~~~-----~~~~~~a~~~g~~aa~~i~~~l~  304 (368)
                      .|.|.||.+.|+ ..|++||+|+|++  ...     ......+.-.|+.|++++++.+.
T Consensus       359 ~GGi~vd~~~~~-~IpGLyAaGe~a~~g~hGanrl~gnsl~~~~vfGr~Ag~~aa~~~~  416 (602)
T 1kf6_A          359 MGGIETDQNCET-RIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAA  416 (602)
T ss_dssp             CCEEECCTTSBC-SSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEECCCCcc-ccCCEEEccccccccccCCCCCccHHHHHHHHHHHHHHHHHHHhhh
Confidence            488999999999 7999999999973  211     11234577789999999988763

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.44  E-value=9.8e-05  Score=73.36  Aligned_cols=87  Identities=24%  Similarity=0.281  Sum_probs=66.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc---------cc--cCchhHHHHHHHHHcC-CcEEEecceee
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL---------EF--VGSRASQIALDWLTSK-KVEVILNQSVT  206 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l---------~~--~~~~~~~~~~~~l~~~-gv~i~~~~~v~  206 (368)
                      .++|+|||+|+.|+.+|..|+++  +.+|+++++++.+.         +.  ....+...+.+.+++. |++++.++.+.
T Consensus       391 ~~~VvIIGgG~AGl~aA~~La~~--G~~V~liE~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~  468 (690)
T 3k30_A          391 DARVLVVGAGPSGLEAARALGVR--GYDVVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAVLAELPNVEIYRESPMT  468 (690)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH--TCEEEEECSSSSSCTHHHHHHTSTTCGGGGHHHHHHHHHHHTCTTEEEESSCCCC
T ss_pred             cceEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCCCCEeeeccCCCchhHHHHHHHHHHHHHHHcCCCEEEECCeec
Confidence            46899999999999999999974  88999999876432         11  1234556677788887 99999887653


Q ss_pred             ecccCCCeEEcCCCcEEecCEEEEccCCCCC
Q 017664          207 LNTISDGLIETSSGETIDTDCHFMCTGKAMA  237 (368)
Q Consensus       207 ~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~  237 (368)
                      .          .+++++.+|.+|+|||..|.
T Consensus       469 ~----------~~~~~~~~d~lvlAtG~~~~  489 (690)
T 3k30_A          469 G----------DDIVEFGFEHVITATGATWR  489 (690)
T ss_dssp             H----------HHHHHTTCCEEEECCCEEEC
T ss_pred             H----------HHHhhcCCCEEEEcCCCccc
Confidence            2          23346789999999998853

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=97.44  E-value=0.00059  Score=62.86  Aligned_cols=93  Identities=19%  Similarity=0.177  Sum_probs=65.6

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-------cCchh-----------------------------
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF-------VGSRA-----------------------------  184 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~-------~~~~~-----------------------------  184 (368)
                      +|+|||+|++|+-+|..|.+  .|.+|+++++.+.+...       +.+..                             
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~--~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~   80 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRK--HGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRF   80 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEE
T ss_pred             EEEEECcCHHHHHHHHHHHh--CCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeE
Confidence            79999999999999999986  48899999876432110       00000                             


Q ss_pred             ------------------------------HHHHHHHHH-cCCcEEEecceeeecccCC-C--eEEcCCCcEEecCEEEE
Q 017664          185 ------------------------------SQIALDWLT-SKKVEVILNQSVTLNTISD-G--LIETSSGETIDTDCHFM  230 (368)
Q Consensus       185 ------------------------------~~~~~~~l~-~~gv~i~~~~~v~~i~~~~-~--~v~~~~g~~i~~d~vi~  230 (368)
                                                    ...+.+.|. ..+..++.+++++.++..+ +  .+.+.||+++++|+||-
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~adlvVg  160 (412)
T 4hb9_A           81 YNERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGLANTIQWNKTFVRYEHIENGGIKIFFADGSHENVDVLVG  160 (412)
T ss_dssp             ECTTSCEEEC--------------CEEEEEHHHHHHHHHTTCTTTEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEE
T ss_pred             ecCCcceecccCCccccccccccccceEeeHHHHHHHHHhhccceEEEEEEEEeeeEcCCCeEEEEECCCCEEEeeEEEE
Confidence                                          011233332 2345678888888887543 3  68899999999999999


Q ss_pred             ccCCC
Q 017664          231 CTGKA  235 (368)
Q Consensus       231 a~G~~  235 (368)
                      |-|..
T Consensus       161 ADG~~  165 (412)
T 4hb9_A          161 ADGSN  165 (412)
T ss_dssp             CCCTT
T ss_pred             CCCCC
Confidence            99965

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.44  E-value=0.00039  Score=65.57  Aligned_cols=92  Identities=18%  Similarity=0.247  Sum_probs=64.8

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc---------------------------cc---------cC--
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL---------------------------EF---------VG--  181 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l---------------------------~~---------~~--  181 (368)
                      .+++|||+|+.|+.+|..+.+  .+.+|+++++.. +.                           +.         .+  
T Consensus         6 ~DVvVIGaG~aGl~aA~~la~--~G~~V~liEk~~-~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~   82 (463)
T 4dna_A            6 YDLFVIGGGSGGVRSGRLAAA--LGKKVAIAEEFR-YGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFDWA   82 (463)
T ss_dssp             EEEEEECCSHHHHHHHHHHHT--TTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEECHH
T ss_pred             CcEEEECcCHHHHHHHHHHHh--CCCEEEEEeCCC-CCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCcCHH
Confidence            479999999999999999985  488999999842 10                           00         00  


Q ss_pred             ----------chhHHHHHHHHHcCCcEEEecceeeecccCCCeEEc-CCCcEEecCEEEEccCCCCC
Q 017664          182 ----------SRASQIALDWLTSKKVEVILNQSVTLNTISDGLIET-SSGETIDTDCHFMCTGKAMA  237 (368)
Q Consensus       182 ----------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~-~~g~~i~~d~vi~a~G~~p~  237 (368)
                                ..+...+.+.+++.|++++.+. +..+  +...+.+ .+++++.+|.+|+|||..|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i--~~~~v~~~~~~~~~~~d~lviAtG~~p~  146 (463)
T 4dna_A           83 KLVAAKEQEIARLEGLYRKGLANAGAEILDTR-AELA--GPNTVKLLASGKTVTAERIVIAVGGHPS  146 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCEEEESC-EEES--SSSEEEETTTTEEEEEEEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEe--eCCEEEEecCCeEEEeCEEEEecCCCcc
Confidence                      0122234455677899999873 3333  2336666 57789999999999998776

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.41  E-value=0.00028  Score=64.71  Aligned_cols=88  Identities=15%  Similarity=0.203  Sum_probs=65.0

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc----------------------c-cc-----------------
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL----------------------L-EF-----------------  179 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~----------------------l-~~-----------------  179 (368)
                      .+|+|||+|+.|+.+|..|.+..++.+|+++++.+..                      . ..                 
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHH   80 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEES
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeC
Confidence            3699999999999999999976568999999986543                      0 00                 


Q ss_pred             ---------------cCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCCcEEecCEEEEccCCCC
Q 017664          180 ---------------VGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       180 ---------------~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                                     ....+.+.+.+.+++.|++++++++|+.++..         +++++|.||.|.|...
T Consensus        81 g~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~---------~~~~ad~vV~AdG~~S  143 (381)
T 3c4a_A           81 NEPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGEL---------PLADYDLVVLANGVNH  143 (381)
T ss_dssp             SSEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGC---------CGGGCSEEEECCGGGG
T ss_pred             CeeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchhc---------ccccCCEEEECCCCCc
Confidence                           00123455667777889999999999877642         1357888888888653

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=97.39  E-value=0.00042  Score=65.10  Aligned_cols=34  Identities=24%  Similarity=0.468  Sum_probs=30.7

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      .++|+|+|+|-.|...|..|. .|++|++||+++.
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~   37 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGD   37 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            467999999999999999997 5999999999864

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=97.39  E-value=0.0011  Score=63.68  Aligned_cols=36  Identities=22%  Similarity=0.454  Sum_probs=31.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhC-CCCeEEEEecCc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDF-PDKKVILVHRGP  174 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~-~~~~v~~i~~~~  174 (368)
                      ..+|+|||+|.+|+-+|..|++.. .+.+|+++++.+
T Consensus         5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   41 (538)
T 2aqj_A            5 IKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAA   41 (538)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence            468999999999999999999643 588999999854

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=97.39  E-value=0.00038  Score=64.52  Aligned_cols=96  Identities=18%  Similarity=0.206  Sum_probs=68.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCe-EEEEecCcccccc-----------------------------------cC-
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKK-VILVHRGPKLLEF-----------------------------------VG-  181 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~-v~~i~~~~~~l~~-----------------------------------~~-  181 (368)
                      ..+|+|||+|++|+-+|..|.+  .+.+ |+++++.+.+.+.                                   .+ 
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~--~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~   81 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQ--AGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQ   81 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECT
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--CCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEcC
Confidence            3579999999999999999986  4788 9999986532100                                   00 


Q ss_pred             -------------------------chhHHHHHHHHHc-CC-cEEEecceeeecccCCC-eEEcCC---C--cEEecCEE
Q 017664          182 -------------------------SRASQIALDWLTS-KK-VEVILNQSVTLNTISDG-LIETSS---G--ETIDTDCH  228 (368)
Q Consensus       182 -------------------------~~~~~~~~~~l~~-~g-v~i~~~~~v~~i~~~~~-~v~~~~---g--~~i~~d~v  228 (368)
                                               ..+.+.+.+.+++ .| ++++.+++|+.++.+++ .+.+.+   |  +++++|+|
T Consensus        82 ~g~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~~~~v~v~~~~~~~g~~~~~~ad~v  161 (410)
T 3c96_A           82 SGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVL  161 (410)
T ss_dssp             TSCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTEEEEEEEETTSCEEEEEESEE
T ss_pred             CCCEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEecCCccEEEEecCCCCCceEEecCEE
Confidence                                     0233445566655 35 68999999998876333 555554   7  57999999


Q ss_pred             EEccCCCC
Q 017664          229 FMCTGKAM  236 (368)
Q Consensus       229 i~a~G~~p  236 (368)
                      |.|.|...
T Consensus       162 V~AdG~~S  169 (410)
T 3c96_A          162 VGADGIHS  169 (410)
T ss_dssp             EECCCTTC
T ss_pred             EECCCccc
Confidence            99999764

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.38  E-value=0.0002  Score=68.08  Aligned_cols=95  Identities=22%  Similarity=0.220  Sum_probs=58.8

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEE-eEEEEeec-
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVV-STAVSITD-   92 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-   92 (368)
                      ..+++|||+|+.|+.+|..|+ .|.+|+++++.+.+....       .+.+.........   ..++++. ..+..+.. 
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~-------d~~~~~~l~~~l~---~~V~i~~~~~v~~i~~~  243 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQ-------DEEMKRYAEKTFN---EEFYFDAKARVISTIEK  243 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTCC-------CHHHHHHHHHHHH---TTSEEETTCEEEEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccccC-------CHHHHHHHHHHHh---hCcEEEECCEEEEEEEc
Confidence            578999999999999999998 499999999998653110       1111000000000   0133331 22333321 


Q ss_pred             -c--EEEec--CC--eEEEecEEEEecCCCCCCCC
Q 017664           93 -T--EVVTA--GG--QTFVYDYVVVATGHVESVPK  120 (368)
Q Consensus        93 -~--~v~~~--~g--~~~~~d~lvlAtG~~~~~p~  120 (368)
                       .  .+.+.  +|  ..+.+|.|++|+|..|..+.
T Consensus       244 ~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~  278 (492)
T 3ic9_A          244 EDAVEVIYFDKSGQKTTESFQYVLAATGRKANVDK  278 (492)
T ss_dssp             SSSEEEEEECTTCCEEEEEESEEEECSCCEESCSS
T ss_pred             CCEEEEEEEeCCCceEEEECCEEEEeeCCccCCCC
Confidence             1  34443  56  68999999999999987664

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.37  E-value=8e-05  Score=71.65  Aligned_cols=37  Identities=22%  Similarity=0.354  Sum_probs=33.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhcCCcEEEEcCCCce
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYF   50 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~g~~v~lie~~~~~   50 (368)
                      ...+|+||||||+||+.+|.+|..+.+|+|+|+++..
T Consensus        24 ~~~yD~IIVGsG~AG~v~A~rLseg~~VlvLEaG~~~   60 (536)
T 1ju2_A           24 EGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLP   60 (536)
T ss_dssp             EEEEEEEEECCSTTHHHHHHHHTTTSCEEEECSSBCG
T ss_pred             cCcccEEEECccHHHHHHHHHHhcCCcEEEEecCCCc
Confidence            3468999999999999999999889999999999753

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.36  E-value=0.0007  Score=64.04  Aligned_cols=95  Identities=15%  Similarity=0.185  Sum_probs=65.0

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc----------------------------------cccc-----
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL----------------------------------LEFV-----  180 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~----------------------------------l~~~-----  180 (368)
                      ..++|||+|+.|+.+|..+++.  +.+|+++++++.+                                  +..+     
T Consensus         4 ~DVvVIGgG~aGl~aA~~la~~--G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~   81 (476)
T 3lad_A            4 FDVIVIGAGPGGYVAAIKSAQL--GLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTG   81 (476)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHH--TCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECS
T ss_pred             CCEEEECcCHHHHHHHHHHHhC--CCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence            4699999999999999999864  7899999987510                                  0000     


Q ss_pred             ----C------------chhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCC--cEEecCEEEEccCCCCC
Q 017664          181 ----G------------SRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSG--ETIDTDCHFMCTGKAMA  237 (368)
Q Consensus       181 ----~------------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g--~~i~~d~vi~a~G~~p~  237 (368)
                          +            ..+...+...+++.|++++.+.... +....-.+.+.+|  +++.+|.+|+|||.+|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~-~~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~  155 (476)
T 3lad_A           82 EVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKL-LAGKKVEVTAADGSSQVLDTENVILASGSKPV  155 (476)
T ss_dssp             CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEE-CSTTCEEEECTTSCEEEECCSCEEECCCEEEC
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-ecCCEEEEEcCCCceEEEEcCEEEEcCCCCCC
Confidence                0            0011122345667899999887543 2222116677777  57999999999998865

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.35  E-value=0.00039  Score=66.61  Aligned_cols=96  Identities=20%  Similarity=0.094  Sum_probs=62.9

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc--------ccc---------c------------------------
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP--------KLL---------E------------------------  178 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~--------~~l---------~------------------------  178 (368)
                      ..++|||+|+.|+.+|..+++  .+.+|+++++.+        .+.         |                        
T Consensus        33 ~DVvVIGgGpaGl~aA~~la~--~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g~~~  110 (519)
T 3qfa_A           33 YDLIIIGGGSGGLAAAKEAAQ--YGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKV  110 (519)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBCC
T ss_pred             CCEEEECCCHHHHHHHHHHHh--CCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcCccc
Confidence            479999999999999999986  488999999742        000         0                        


Q ss_pred             ----ccCc------------hhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCCc--EEecCEEEEccCCCCCc
Q 017664          179 ----FVGS------------RASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGE--TIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       179 ----~~~~------------~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~--~i~~d~vi~a~G~~p~~  238 (368)
                          ..+.            .+...+...+++.+|+++.+. ...+....-.+.+.+|+  ++.+|.+|+|||.+|..
T Consensus       111 ~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~-a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs~p~~  187 (519)
T 3qfa_A          111 EETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAY-GQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRY  187 (519)
T ss_dssp             CSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSE-EEEEETTEEEEECTTCCCCEEEEEEEEECCCEEECC
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEeeCCEEEEEcCCCCEEEEECCEEEEECCCCcCC
Confidence                0000            001112234667899998765 33222221156666664  79999999999988754

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.33  E-value=0.00013  Score=70.13  Aligned_cols=36  Identities=36%  Similarity=0.549  Sum_probs=31.7

Q ss_pred             CCCcEEEECCChHHHHHHHHhh--cCCcEEEEcCCCce
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ--SFADVVLIDEKEYF   50 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~--~g~~v~lie~~~~~   50 (368)
                      ..+|+||||||+||+.+|.+|.  .+++|+|+|+++..
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~~   53 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEP   53 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBCC
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCCC
Confidence            3699999999999999999997  37899999998653

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.30  E-value=0.00015  Score=69.87  Aligned_cols=60  Identities=15%  Similarity=0.054  Sum_probs=43.0

Q ss_pred             HHHHH-HcCCcEEEecceeeecccCCC---eEEcCC---Cc--EE---ecCEEEEccCCCCCchhhhccccc
Q 017664          188 ALDWL-TSKKVEVILNQSVTLNTISDG---LIETSS---GE--TI---DTDCHFMCTGKAMASSWLRETILK  247 (368)
Q Consensus       188 ~~~~l-~~~gv~i~~~~~v~~i~~~~~---~v~~~~---g~--~i---~~d~vi~a~G~~p~~~~~~~~~l~  247 (368)
                      +.+.+ ++.|+++++++.|+++..+++   .|++.+   |+  ++   .++.||+|+|....+.++..++++
T Consensus       201 ~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~gV~~~~~~~g~~~~~~v~~~~~VIlaaG~~~sp~lL~~sGig  272 (546)
T 1kdg_A          201 YLQTALARPNFTFKTNVMVSNVVRNGSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIG  272 (546)
T ss_dssp             HHHHHHTCTTEEEECSCCEEEEEEETTEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHHHTTBS
T ss_pred             HHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEecCCCceeEEEEEeCCEEEEcCChhcCHHHHHHcCCC
Confidence            34444 456999999999999987655   555543   53  34   799999999986556676666653

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.27  E-value=0.0002  Score=67.94  Aligned_cols=95  Identities=17%  Similarity=0.127  Sum_probs=58.6

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeec-
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITD-   92 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   92 (368)
                      ..+++|||+|+.|+-+|..|+ .|.+|+++++...+.    .+    .+...........  ..+++++.. .+..+.. 
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~----~~----d~~~~~~l~~~l~--~~Gv~i~~~~~v~~i~~~  256 (483)
T 3dgh_A          187 PGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLR----GF----DQQMAELVAASME--ERGIPFLRKTVPLSVEKQ  256 (483)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSST----TS----CHHHHHHHHHHHH--HTTCCEEETEEEEEEEEC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCc----cc----CHHHHHHHHHHHH--hCCCEEEeCCEEEEEEEc
Confidence            468999999999999999987 499999999853221    00    1111000000001  125666544 3444432 


Q ss_pred             --c--EEEecCC-----eEEEecEEEEecCCCCCCCC
Q 017664           93 --T--EVVTAGG-----QTFVYDYVVVATGHVESVPK  120 (368)
Q Consensus        93 --~--~v~~~~g-----~~~~~d~lvlAtG~~~~~p~  120 (368)
                        .  .+.+.++     ..+.+|.+++|+|..|..+.
T Consensus       257 ~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~  293 (483)
T 3dgh_A          257 DDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDD  293 (483)
T ss_dssp             TTSCEEEEEEETTTCCEEEEEESEEEECSCEEECCGG
T ss_pred             CCCcEEEEEecCCCCceeEEEcCEEEECcccccCcCc
Confidence              1  3444443     27899999999999987654

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.27  E-value=0.00063  Score=70.04  Aligned_cols=98  Identities=17%  Similarity=0.127  Sum_probs=67.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---c-----c----CchhHHHHHHHHHcC-CcEEEeccee
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE---F-----V----GSRASQIALDWLTSK-KVEVILNQSV  205 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~---~-----~----~~~~~~~~~~~l~~~-gv~i~~~~~v  205 (368)
                      ..+++|||+|+.|+.+|..+.+  .+.+|+++++.+.+..   .     .    ..++...+.+.+++. +++++.++.+
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~--~G~~V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~V  205 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASR--SGARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTTV  205 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHh--CCCcEEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCEE
Confidence            4679999999999999999986  4789999998765321   0     1    112334445566664 9999999988


Q ss_pred             eecccCCC-----------eEEc------CCCcEEecCEEEEccCCCCCc
Q 017664          206 TLNTISDG-----------LIET------SSGETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       206 ~~i~~~~~-----------~v~~------~~g~~i~~d~vi~a~G~~p~~  238 (368)
                      ..+...+.           .+.+      .++.++.+|.+|+|||..|..
T Consensus       206 ~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~  255 (965)
T 2gag_A          206 FGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERP  255 (965)
T ss_dssp             EEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECC
T ss_pred             EeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCC
Confidence            77654321           1111      112378999999999987653

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.25  E-value=0.00029  Score=66.94  Aligned_cols=95  Identities=15%  Similarity=0.131  Sum_probs=58.2

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEee--
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSIT--   91 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--   91 (368)
                      ..+++|||+|+.|+-+|..|+ .|.+|+++++...+.    .+    ++.+.........  ..+++++.. .+..+.  
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l~----~~----d~~~~~~l~~~l~--~~gv~~~~~~~v~~i~~~  254 (488)
T 3dgz_A          185 PGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLR----GF----DQQMSSLVTEHME--SHGTQFLKGCVPSHIKKL  254 (488)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSST----TS----CHHHHHHHHHHHH--HTTCEEEETEEEEEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCcccc----cC----CHHHHHHHHHHHH--HCCCEEEeCCEEEEEEEc
Confidence            457999999999999999997 499999999864221    00    1111110000011  125666544 344443  


Q ss_pred             -cc--EEEecC---Ce--EEEecEEEEecCCCCCCCC
Q 017664           92 -DT--EVVTAG---GQ--TFVYDYVVVATGHVESVPK  120 (368)
Q Consensus        92 -~~--~v~~~~---g~--~~~~d~lvlAtG~~~~~p~  120 (368)
                       ..  .+.+.+   ++  .+.+|.+++|+|..|..+.
T Consensus       255 ~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~  291 (488)
T 3dgz_A          255 PTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRT  291 (488)
T ss_dssp             TTSCEEEEEEETTTTEEEEEEESEEEECSCEEESCGG
T ss_pred             CCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcccCc
Confidence             22  343333   54  4789999999999987654

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.22  E-value=0.00015  Score=71.42  Aligned_cols=35  Identities=26%  Similarity=0.588  Sum_probs=32.1

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-C--------CcEEEEcCCC-ce
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-F--------ADVVLIDEKE-YF   50 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g--------~~v~lie~~~-~~   50 (368)
                      .++|+|||||++||+||+.|++ |        ++|+|+|+++ .+
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            5789999999999999999974 6        9999999998 87

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=97.21  E-value=0.00024  Score=68.74  Aligned_cols=61  Identities=16%  Similarity=0.160  Sum_probs=43.0

Q ss_pred             HHHHHHHcCCcEEEecceeeecccC----CC---eEEc--CCCc--EEecC-EEEEccCCCCCchhhhccccc
Q 017664          187 IALDWLTSKKVEVILNQSVTLNTIS----DG---LIET--SSGE--TIDTD-CHFMCTGKAMASSWLRETILK  247 (368)
Q Consensus       187 ~~~~~l~~~gv~i~~~~~v~~i~~~----~~---~v~~--~~g~--~i~~d-~vi~a~G~~p~~~~~~~~~l~  247 (368)
                      .+...+++.|+++++++.|+++..+    ++   +|+.  .+|+  ++.+. -||+|+|.--.+.+|..+|++
T Consensus       232 yL~p~~~r~NL~V~t~a~V~rIl~d~~~~~~ra~GV~~~~~~G~~~~v~A~kEVILsAGa~~SPqLL~lSGIG  304 (583)
T 3qvp_A          232 WLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIG  304 (583)
T ss_dssp             HTTTTTTCTTEEEECSCEEEEEEEECSSSSCEEEEEEEESSTTCEEEEEEEEEEEECSCTTTHHHHHHHTTBS
T ss_pred             HHHHhhcCCCcEEEcCCEEEEEEeccCCCCCEEEEEEEEecCCcEEEEEECCEEEEeCCccCCHHHHHHcCCC
Confidence            3434456789999999999998765    33   4543  4564  56676 699999987556666666654

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=97.11  E-value=0.00034  Score=67.66  Aligned_cols=35  Identities=20%  Similarity=0.383  Sum_probs=31.5

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc-C-CcEEEEcCCCc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS-F-ADVVLIDEKEY   49 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~-g-~~v~lie~~~~   49 (368)
                      +.+|+||||||.||+.+|.+|.. + .+|+|||+++.
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            46999999999999999999984 4 79999999875

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.09  E-value=0.00022  Score=71.22  Aligned_cols=87  Identities=23%  Similarity=0.242  Sum_probs=57.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------ccC--chhHHHHHHHHHc------CCcEEEe
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE---------FVG--SRASQIALDWLTS------KKVEVIL  201 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~---------~~~--~~~~~~~~~~l~~------~gv~i~~  201 (368)
                      .++|+|||+|+.|+.+|..|.+  .+.+|+++++.+.+..         ...  ..+.+.+.+.++.      .++++..
T Consensus       389 ~~~VvIIGgGpAGl~aA~~L~~--~G~~Vtlie~~~~~GG~~~~~~~~pg~~~~~~~~~~~~~~i~~~~~~~~~~v~i~~  466 (729)
T 1o94_A          389 KDSVLIVGAGPSGSEAARVLME--SGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLALG  466 (729)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSTTTTHHHHTTSTTCGGGHHHHHHHHHHHHHHHHHSTTCEEECS
T ss_pred             CceEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCcCCeeeecccCCChHHHHHHHHHHHHHHHHhhcccCCceEEEe
Confidence            4689999999999999999986  4789999998765421         111  1122223333332      2566654


Q ss_pred             cceeeecccCCCeEEcCCCcEEecCEEEEccCCCCC
Q 017664          202 NQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMA  237 (368)
Q Consensus       202 ~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~  237 (368)
                      ++.          +.++++.++.+|.+|+|||..|.
T Consensus       467 ~~~----------v~~~~~~~~~~d~vviAtG~~~~  492 (729)
T 1o94_A          467 QKP----------MTADDVLQYGADKVIIATGARWN  492 (729)
T ss_dssp             CCC----------CCHHHHHTSCCSEEEECCCEEEC
T ss_pred             CeE----------EehhhccccCCCEEEEcCCCCcc
Confidence            432          22334456889999999998753

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.01  E-value=0.00061  Score=66.23  Aligned_cols=56  Identities=11%  Similarity=-0.043  Sum_probs=47.2

Q ss_pred             CchhHHHHHHHHHcCCcEEEecceeeecccCC--C---eEEcCCCcEEecCEEEEccCCCC
Q 017664          181 GSRASQIALDWLTSKKVEVILNQSVTLNTISD--G---LIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       181 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~--~---~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                      ..++.+.+.+.+++.|.++++++.|.+|..++  +   .+++.+|+++.||.||....+.|
T Consensus       377 ~g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~~lp  437 (650)
T 1vg0_A          377 QGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLS  437 (650)
T ss_dssp             TTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBC
T ss_pred             hhHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChhhcC
Confidence            34788899999999999999999999987665  4   56677899999999999776655

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=96.98  E-value=0.00057  Score=65.21  Aligned_cols=39  Identities=18%  Similarity=0.337  Sum_probs=34.1

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCce
Q 017664           12 GLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYF   50 (368)
Q Consensus        12 ~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~   50 (368)
                      .+...+|++|||+|++|+.+|.+|. ++.+|+|+|++...
T Consensus         7 ~~~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~   46 (507)
T 1coy_A            7 ADGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSW   46 (507)
T ss_dssp             CTTCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCS
T ss_pred             CcCCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            3456799999999999999999997 59999999998754

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=96.96  E-value=0.0049  Score=58.99  Aligned_cols=36  Identities=31%  Similarity=0.576  Sum_probs=30.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhC----------CCCeEEEEecCc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDF----------PDKKVILVHRGP  174 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~----------~~~~v~~i~~~~  174 (368)
                      ..+|+|||||+.|.-+|..|++..          .+.+|+++++.+
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~   52 (526)
T 2pyx_A            7 ITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPD   52 (526)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCC
Confidence            468999999999999999998622          578999999764

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=96.91  E-value=0.00056  Score=65.22  Aligned_cols=37  Identities=19%  Similarity=0.357  Sum_probs=33.1

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCcee
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFE   51 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~   51 (368)
                      ..+|++|||+|++|+++|.+|. .+.+|+|+|+++.+.
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~   41 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN   41 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            4689999999999999999997 599999999998654

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=96.87  E-value=0.0011  Score=64.69  Aligned_cols=32  Identities=22%  Similarity=0.127  Sum_probs=29.0

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCC
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEK   47 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~   47 (368)
                      ..+++|||||+.|+-+|..|+ .|.+|+++++.
T Consensus       286 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          286 PGKTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            457999999999999999997 49999999987

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=96.87  E-value=0.00069  Score=65.81  Aligned_cols=36  Identities=22%  Similarity=0.404  Sum_probs=32.4

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc--CCcEEEEcCCCce
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS--FADVVLIDEKEYF   50 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~--g~~v~lie~~~~~   50 (368)
                      ..+|+||||+|++|+++|.+|.+  +.+|+|+|++...
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            56899999999999999999974  8999999998754

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=96.86  E-value=0.00046  Score=66.61  Aligned_cols=35  Identities=20%  Similarity=0.312  Sum_probs=31.7

Q ss_pred             CCcEEEECCChHHHHHHHHhhc--CCcEEEEcCCCce
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS--FADVVLIDEKEYF   50 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~--g~~v~lie~~~~~   50 (368)
                      .+|+||||||.||+.+|.+|..  +.+|+|||+++..
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence            5899999999999999999974  8999999998754

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=96.85  E-value=0.0041  Score=59.32  Aligned_cols=35  Identities=40%  Similarity=0.564  Sum_probs=28.8

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhC-CCCeEEEEecCc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDF-PDKKVILVHRGP  174 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~-~~~~v~~i~~~~  174 (368)
                      .+|+|||||.+|+-+|..|++.. .+.+|+++++.+
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~   38 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGN   38 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC--
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCC
Confidence            47999999999999999998632 478999999864

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=96.75  E-value=0.0092  Score=58.07  Aligned_cols=50  Identities=18%  Similarity=0.143  Sum_probs=37.4

Q ss_pred             HHHHHHHHcCC-cEEEecceeeecccCCC---eEE---cCCCc--EEecCEEEEccCCC
Q 017664          186 QIALDWLTSKK-VEVILNQSVTLNTISDG---LIE---TSSGE--TIDTDCHFMCTGKA  235 (368)
Q Consensus       186 ~~~~~~l~~~g-v~i~~~~~v~~i~~~~~---~v~---~~~g~--~i~~d~vi~a~G~~  235 (368)
                      ..+.+.+++.| |+++.++.+.++..+++   .+.   +.+|+  .+.++.||+|+|-.
T Consensus       138 ~~L~~~~~~~gnv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~  196 (602)
T 1kf6_A          138 HTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGA  196 (602)
T ss_dssp             HHHHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCC
T ss_pred             HHHHHHHHhCCCcEEEeCCEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCC
Confidence            34455666777 99999999998876655   232   36776  78999999999963

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=96.75  E-value=0.004  Score=58.77  Aligned_cols=52  Identities=21%  Similarity=0.206  Sum_probs=36.8

Q ss_pred             HHHHHHHHHcCCcEEEecceeeecccCCCe---EEc-CCCcEEecCEEEEccCCCCC
Q 017664          185 SQIALDWLTSKKVEVILNQSVTLNTISDGL---IET-SSGETIDTDCHFMCTGKAMA  237 (368)
Q Consensus       185 ~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~---v~~-~~g~~i~~d~vi~a~G~~p~  237 (368)
                      ...+.+.+++.|++++.++.+ ++..+++.   +.. .++.++.+|.||+|||..+.
T Consensus       122 ~~~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~  177 (472)
T 2e5v_A          122 FNFLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGLVEDVDKLVLATGGYSY  177 (472)
T ss_dssp             HHHHHHHHHHTTCCEECCCEE-EEEEETTEEEEEEETTTEEECCCSEEEECCCCCGG
T ss_pred             HHHHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCCeEEeeeEEECCCCCcc
Confidence            344556667789999999999 88665552   333 22235789999999997653

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=96.69  E-value=0.0055  Score=60.15  Aligned_cols=95  Identities=24%  Similarity=0.367  Sum_probs=68.0

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc--------------------------------------c---
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL--------------------------------------E---  178 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l--------------------------------------~---  178 (368)
                      .+|+|||+|++|+-+|..|++. .+.+|.++++.+...                                      .   
T Consensus        33 ~dVlIVGaGpaGL~~A~~La~~-~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~~  111 (639)
T 2dkh_A           33 VDVLIVGCGPAGLTLAAQLAAF-PDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPDP  111 (639)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTC-TTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEECT
T ss_pred             CcEEEECcCHHHHHHHHHHHHh-CCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCCC
Confidence            4799999999999999999841 588899998753210                                      0   


Q ss_pred             ---c----------------------cC-chhHHHHHHHHHcCCc--EEEecceeeecccCC-----C-eEEcC------
Q 017664          179 ---F----------------------VG-SRASQIALDWLTSKKV--EVILNQSVTLNTISD-----G-LIETS------  218 (368)
Q Consensus       179 ---~----------------------~~-~~~~~~~~~~l~~~gv--~i~~~~~v~~i~~~~-----~-~v~~~------  218 (368)
                         .                      .+ ..+...+.+.+++.|+  +++.+++++.++.++     . .+.+.      
T Consensus       112 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~  191 (639)
T 2dkh_A          112 GQPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAH  191 (639)
T ss_dssp             TSTTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGG
T ss_pred             CCCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccC
Confidence               0                      00 1234456677788876  999999999887654     2 34433      


Q ss_pred             CC--cEEecCEEEEccCCC
Q 017664          219 SG--ETIDTDCHFMCTGKA  235 (368)
Q Consensus       219 ~g--~~i~~d~vi~a~G~~  235 (368)
                      +|  +++.+|+||.|.|..
T Consensus       192 ~G~~~~i~a~~vVgADG~~  210 (639)
T 2dkh_A          192 AGQIETVQARYVVGCDGAR  210 (639)
T ss_dssp             TTCEEEEEEEEEEECCCTT
T ss_pred             CCCeEEEEeCEEEECCCcc
Confidence            45  579999999999965

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=96.63  E-value=0.0014  Score=63.16  Aligned_cols=36  Identities=22%  Similarity=0.386  Sum_probs=32.3

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc--CCcEEEEcCCCce
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS--FADVVLIDEKEYF   50 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~--g~~v~lie~~~~~   50 (368)
                      ..+|++|||+|++|+++|.+|.+  +.+|+|+|+++..
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~   49 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD   49 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence            46899999999999999999973  8999999999754

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=96.61  E-value=0.0058  Score=58.86  Aligned_cols=91  Identities=18%  Similarity=0.302  Sum_probs=63.6

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc------------------------------c-----------
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL------------------------------E-----------  178 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l------------------------------~-----------  178 (368)
                      .+|+|||+|++|+-+|..|.+  .+.+|+++++.+...                              +           
T Consensus        27 ~dVlIVGaGpaGl~~A~~La~--~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~  104 (549)
T 2r0c_A           27 TDVLILGGGPVGMALALDLAH--RQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVT  104 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEES
T ss_pred             CCEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEec
Confidence            479999999999999999986  478899988754210                              0           


Q ss_pred             ---c-----cC-------------c---------hhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCC---C--c
Q 017664          179 ---F-----VG-------------S---------RASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSS---G--E  221 (368)
Q Consensus       179 ---~-----~~-------------~---------~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~---g--~  221 (368)
                         .     ++             +         .+.+.+.+.+++.   ++.+++++.++.+++  .+++.+   |  +
T Consensus       105 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~v~v~~~~~~~G~~~  181 (549)
T 2r0c_A          105 RVGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER---LRTRSRLDSFEQRDDHVRATITDLRTGATR  181 (549)
T ss_dssp             SBTSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG---EECSEEEEEEEECSSCEEEEEEETTTCCEE
T ss_pred             cCCCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh---cccCcEEEEEEEeCCEEEEEEEECCCCCEE
Confidence               0     00             0         1223444555555   888999998887665  444443   6  4


Q ss_pred             EEecCEEEEccCCC
Q 017664          222 TIDTDCHFMCTGKA  235 (368)
Q Consensus       222 ~i~~d~vi~a~G~~  235 (368)
                      ++.+|+||.|.|..
T Consensus       182 ~i~a~~vVgADG~~  195 (549)
T 2r0c_A          182 AVHARYLVACDGAS  195 (549)
T ss_dssp             EEEEEEEEECCCTT
T ss_pred             EEEeCEEEECCCCC
Confidence            79999999999965

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=96.51  E-value=0.0071  Score=56.68  Aligned_cols=37  Identities=30%  Similarity=0.504  Sum_probs=30.8

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhC----CCCeEEEEecCccc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDF----PDKKVILVHRGPKL  176 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~----~~~~v~~i~~~~~~  176 (368)
                      ++|+|||+|.+|+-+|..|.++.    ++.+|+++++++++
T Consensus         6 ~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~   46 (470)
T 3i6d_A            6 KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRV   46 (470)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCC
Confidence            57999999999999999999752    23899999987543

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=96.45  E-value=0.0095  Score=56.62  Aligned_cols=99  Identities=12%  Similarity=0.076  Sum_probs=64.9

Q ss_pred             eEEEEcCchhHHHHHHHHhhhC------------CCCeEEEEecCcccc-------cc----------------------
Q 017664          141 SVLIVGGGPTGVELAGEIAVDF------------PDKKVILVHRGPKLL-------EF----------------------  179 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~------------~~~~v~~i~~~~~~l-------~~----------------------  179 (368)
                      .|+|||+|++|+-+|..|.+..            .+....++++.+.+.       +.                      
T Consensus        41 Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~s~~s  120 (501)
T 4b63_A           41 DLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPRSSFT  120 (501)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTTCTTS
T ss_pred             cEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCCCccc
Confidence            5999999999999998887531            223456777655321       10                      


Q ss_pred             --------------------c--CchhHHHHHHHHHcCCcEEEecceeeecccCCC----------eEEcCCC-----cE
Q 017664          180 --------------------V--GSRASQIALDWLTSKKVEVILNQSVTLNTISDG----------LIETSSG-----ET  222 (368)
Q Consensus       180 --------------------~--~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~----------~v~~~~g-----~~  222 (368)
                                          +  -.++.++++...++.+..++.+++|++++..+.          .|++.++     ++
T Consensus       121 f~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~  200 (501)
T 4b63_A          121 FLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISA  200 (501)
T ss_dssp             HHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEE
T ss_pred             hHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEE
Confidence                                0  013444555555667777889999988864221          4554433     36


Q ss_pred             EecCEEEEccCCCCCch
Q 017664          223 IDTDCHFMCTGKAMASS  239 (368)
Q Consensus       223 i~~d~vi~a~G~~p~~~  239 (368)
                      +.++.+|+|+|..|..+
T Consensus       201 ~~ar~vVlatG~~P~iP  217 (501)
T 4b63_A          201 RRTRKVVIAIGGTAKMP  217 (501)
T ss_dssp             EEEEEEEECCCCEECCC
T ss_pred             EEeCEEEECcCCCCCCC
Confidence            88999999999877643

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=96.36  E-value=0.027  Score=54.64  Aligned_cols=49  Identities=12%  Similarity=0.085  Sum_probs=36.5

Q ss_pred             HHHHHHHHcCCcEEEecceeeecccC-CC---eEE---cCCCc--EEecCEEEEccCC
Q 017664          186 QIALDWLTSKKVEVILNQSVTLNTIS-DG---LIE---TSSGE--TIDTDCHFMCTGK  234 (368)
Q Consensus       186 ~~~~~~l~~~gv~i~~~~~v~~i~~~-~~---~v~---~~~g~--~i~~d~vi~a~G~  234 (368)
                      ..+.+.+++.||++++++.+.++..+ ++   .+.   +.+|+  .+.++.||+|||-
T Consensus       147 ~~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg  204 (588)
T 2wdq_A          147 HTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGG  204 (588)
T ss_dssp             HHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCC
T ss_pred             HHHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCC
Confidence            33455666789999999999988764 44   333   25665  6899999999995

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.36  E-value=0.0038  Score=48.27  Aligned_cols=38  Identities=24%  Similarity=0.272  Sum_probs=32.4

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           12 GLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        12 ~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      +...+.+++|+|+|..|...|..|+ .|++|+++|+++.
T Consensus         3 ~~~~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~   41 (140)
T 3fwz_A            3 AVDICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRT   41 (140)
T ss_dssp             CCCCCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             cccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            3344568999999999999999997 5999999999863

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=96.28  E-value=0.017  Score=55.77  Aligned_cols=34  Identities=32%  Similarity=0.409  Sum_probs=29.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      ...|+|||+|.+|+-+|..++++  +.+|+++++.+
T Consensus        32 ~~DVvVIGgGi~G~~~A~~La~r--G~~V~LlE~~~   65 (571)
T 2rgh_A           32 ELDLLIIGGGITGAGVAVQAAAS--GIKTGLIEMQD   65 (571)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCC
Confidence            45899999999999999999964  88999999764

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.15  E-value=0.0051  Score=48.40  Aligned_cols=39  Identities=36%  Similarity=0.469  Sum_probs=31.4

Q ss_pred             cCCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           11 AGLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        11 ~~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      |......+++|+|+|..|...|..|+ .|++|+++|+++.
T Consensus        14 ~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           14 SKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             ---CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             hcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            34445678999999999999999997 5999999998753

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=96.12  E-value=0.035  Score=55.57  Aligned_cols=39  Identities=13%  Similarity=0.184  Sum_probs=33.9

Q ss_pred             CCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccC
Q 017664          195 KKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTG  233 (368)
Q Consensus       195 ~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G  233 (368)
                      .|++|+++++|++|+.+++  .|.+.+|+++.+|.||+|+.
T Consensus       542 ~gl~I~l~t~V~~I~~~~~~v~V~~~~G~~i~Ad~VIvA~P  582 (776)
T 4gut_A          542 EGLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVP  582 (776)
T ss_dssp             TTSCEESSCCEEEEECSSSSEEEEETTCCEEEESEEEECCC
T ss_pred             hCCcEEcCCeeEEEEEcCCEEEEEECCCcEEEcCEEEECCC
Confidence            3789999999999987765  67788898999999999985

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=95.99  E-value=0.032  Score=54.34  Aligned_cols=49  Identities=8%  Similarity=0.053  Sum_probs=36.0

Q ss_pred             HHHHHHHHcCCcEEEecceeeecccCCC---eEEc---CCCc--EEecCEEEEccCC
Q 017664          186 QIALDWLTSKKVEVILNQSVTLNTISDG---LIET---SSGE--TIDTDCHFMCTGK  234 (368)
Q Consensus       186 ~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~---~~g~--~i~~d~vi~a~G~  234 (368)
                      ..+.+.+++.||+++.++.+.++..+++   ++..   .+|+  .+.++.||+|||-
T Consensus       159 ~~L~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG  215 (621)
T 2h88_A          159 HTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGG  215 (621)
T ss_dssp             HHHHHHHTTSCCEEEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCC
T ss_pred             HHHHHHHHhCCCEEEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCc
Confidence            3445556678999999999988876555   3332   4665  6899999999995

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=95.94  E-value=0.0065  Score=46.86  Aligned_cols=33  Identities=21%  Similarity=0.355  Sum_probs=29.9

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      +.+++|+|+|..|...|..|. +|++|+++|+++
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            468999999999999999997 599999999875

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.75  E-value=0.012  Score=46.06  Aligned_cols=34  Identities=15%  Similarity=0.173  Sum_probs=30.2

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      .+.+++|+|+|..|...|..|. .|++|+++|+++
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            3568999999999999999997 599999999974

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.73  E-value=0.033  Score=52.14  Aligned_cols=83  Identities=14%  Similarity=0.084  Sum_probs=60.8

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEc
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIET  217 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~  217 (368)
                      .++++.|+|.|.+|+.+|..|.+  .|.+|+..+.++..        .....+.|++.|++++.+.....+.        
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~--~G~~V~~~D~~~~~--------~~~~~~~L~~~gi~~~~g~~~~~~~--------   69 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAK--LGAIVTVNDGKPFD--------ENPTAQSLLEEGIKVVCGSHPLELL--------   69 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHH--TTCEEEEEESSCGG--------GCHHHHHHHHTTCEEEESCCCGGGG--------
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHh--CCCEEEEEeCCccc--------CChHHHHHHhCCCEEEECCChHHhh--------
Confidence            47899999999999999888875  58999999876531        1123456788899999876532110        


Q ss_pred             CCCcEEecCEEEEccCCCCCchhhh
Q 017664          218 SSGETIDTDCHFMCTGKAMASSWLR  242 (368)
Q Consensus       218 ~~g~~i~~d~vi~a~G~~p~~~~~~  242 (368)
                       ++   .+|.||+++|.+++.+.+.
T Consensus        70 -~~---~~d~vv~spgi~~~~p~~~   90 (451)
T 3lk7_A           70 -DE---DFCYMIKNPGIPYNNPMVK   90 (451)
T ss_dssp             -GS---CEEEEEECTTSCTTSHHHH
T ss_pred             -cC---CCCEEEECCcCCCCChhHH
Confidence             00   2799999999988776554

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=95.53  E-value=0.011  Score=52.68  Aligned_cols=67  Identities=22%  Similarity=0.192  Sum_probs=48.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-------c-CchhHHHHHHHHHcCCcEEEeccee
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF-------V-GSRASQIALDWLTSKKVEVILNQSV  205 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~-------~-~~~~~~~~~~~l~~~gv~i~~~~~v  205 (368)
                      ...|+|||+|+.|+-+|..|.++..+.+|+++++.+.+...       + ...+...+.+.+++.|+++..+...
T Consensus        65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~~~~~~~~~~l~~~~~~~~~e~Gv~~~~~~~~  139 (326)
T 3fpz_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDY  139 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCSTTCCCEEEETTTHHHHHHTTCCCEECSSE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEeCCccCCHHHHHHHHHHHHHHcCCEEEECCcc
Confidence            56799999999999999999876679999999987653210       1 1122234456677889888776543

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=95.48  E-value=0.018  Score=49.14  Aligned_cols=42  Identities=14%  Similarity=-0.043  Sum_probs=34.5

Q ss_pred             CeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCC
Q 017664          261 NLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGR  306 (368)
Q Consensus       261 ~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~  306 (368)
                      .+++ +.++||++||++..+   ....|+.+|+.||+.|++.|+++
T Consensus       289 ~~~~-~~~~v~l~GDa~~g~---gv~~A~~sG~~aA~~I~~~L~~e  330 (336)
T 3kkj_A          289 ALSD-ADLGIYVCGDWCLSG---RVEGAWLSGQEAARRLLEHLQLE  330 (336)
T ss_dssp             SEEE-TTTTEEECCGGGTTS---SHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             ceee-CCCCEEEEecccCCc---CHHHHHHHHHHHHHHHHHHhhcc
Confidence            3455 679999999998654   36789999999999999999875

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=95.45  E-value=0.079  Score=52.00  Aligned_cols=48  Identities=13%  Similarity=0.052  Sum_probs=34.7

Q ss_pred             HHHHHHHcCCcEEEecceeeecccCCC---eEE---cCCCc--EEecCEEEEccCC
Q 017664          187 IALDWLTSKKVEVILNQSVTLNTISDG---LIE---TSSGE--TIDTDCHFMCTGK  234 (368)
Q Consensus       187 ~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~---~~~g~--~i~~d~vi~a~G~  234 (368)
                      .+.+.+++.||+++.++.+.++..+++   .+.   +.+|+  .+.++.||+|||-
T Consensus       163 ~L~~~a~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG  218 (660)
T 2bs2_A          163 AVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGG  218 (660)
T ss_dssp             HHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCC
T ss_pred             HHHHHHHhCCCEEEECcEEEEEEecCCEEEEEEEEECCCCcEEEEEcCEEEEccCc
Confidence            344555667899999999988865544   332   25675  5899999999985

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.45  E-value=0.013  Score=44.71  Aligned_cols=33  Identities=30%  Similarity=0.353  Sum_probs=29.0

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      .++++|||+|..|...|..|. .|++|+++|+++
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            357999999999999999997 599999999865

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=95.44  E-value=0.03  Score=55.12  Aligned_cols=35  Identities=37%  Similarity=0.561  Sum_probs=28.1

Q ss_pred             CeEEEEcCchhHHHHHHHHhhh---CCCCeEEEEecCc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVD---FPDKKVILVHRGP  174 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~---~~~~~v~~i~~~~  174 (368)
                      ..|+|||+|++|+-+|..|++.   ..+.+|.++++.+
T Consensus         9 ~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~   46 (665)
T 1pn0_A            9 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS   46 (665)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             CcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCC
Confidence            3699999999999999999851   0478899998753

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=95.35  E-value=0.03  Score=53.64  Aligned_cols=32  Identities=41%  Similarity=0.747  Sum_probs=26.4

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      ..|+|||+|.+|+-+|..+++   +.+|.++++.+
T Consensus         9 ~DVvVVG~G~AGl~aAl~la~---G~~V~vlEk~~   40 (540)
T 1chu_A            9 CDVLIIGSGAAGLSLALRLAD---QHQVIVLSKGP   40 (540)
T ss_dssp             CSEEEECCSHHHHHHHHHHTT---TSCEEEECSSC
T ss_pred             CCEEEECccHHHHHHHHHHhc---CCcEEEEECCC
Confidence            468999999999999988873   77888888764

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.35  E-value=0.05  Score=45.41  Aligned_cols=79  Identities=15%  Similarity=0.209  Sum_probs=54.0

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEc
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIET  217 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~  217 (368)
                      .+++++|||+|.+|...+..|.+  .+.+|+++.+..          ...+.+..++.+++++....-    .       
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~--~GA~VtVvap~~----------~~~l~~l~~~~~i~~i~~~~~----~-------   86 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQ--EGAAITVVAPTV----------SAEINEWEAKGQLRVKRKKVG----E-------   86 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGG--GCCCEEEECSSC----------CHHHHHHHHTTSCEEECSCCC----G-------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEECCCC----------CHHHHHHHHcCCcEEEECCCC----H-------
Confidence            47999999999999999999986  478999987542          123455556667877643321    0       


Q ss_pred             CCCcEEecCEEEEccCCCCCchhh
Q 017664          218 SSGETIDTDCHFMCTGKAMASSWL  241 (368)
Q Consensus       218 ~~g~~i~~d~vi~a~G~~p~~~~~  241 (368)
                        +.--.+|+||.||+-......+
T Consensus        87 --~dL~~adLVIaAT~d~~~N~~I  108 (223)
T 3dfz_A           87 --EDLLNVFFIVVATNDQAVNKFV  108 (223)
T ss_dssp             --GGSSSCSEEEECCCCTHHHHHH
T ss_pred             --hHhCCCCEEEECCCCHHHHHHH
Confidence              1112389999999876443333

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.31  E-value=0.069  Score=47.57  Aligned_cols=81  Identities=12%  Similarity=-0.023  Sum_probs=58.8

Q ss_pred             CCeEEEEcCchhHHH-HHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEc
Q 017664          139 ANSVLIVGGGPTGVE-LAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIET  217 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e-~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~  217 (368)
                      .+++.++|.|-+|+. +|..|.+  .|.+|+..+..+..      .    ..+.|++.|++++.+.....+..       
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~--~G~~V~~~D~~~~~------~----~~~~L~~~gi~v~~g~~~~~l~~-------   64 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKE--AGFEVSGCDAKMYP------P----MSTQLEALGIDVYEGFDAAQLDE-------   64 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHH--TTCEEEEEESSCCT------T----HHHHHHHTTCEEEESCCGGGGGS-------
T ss_pred             CcEEEEEEECHHHHHHHHHHHHh--CCCEEEEEcCCCCc------H----HHHHHHhCCCEEECCCCHHHcCC-------
Confidence            578999999999997 7777764  58999999876531      1    34567788999987754321100       


Q ss_pred             CCCcEEecCEEEEccCCCCCchhhhc
Q 017664          218 SSGETIDTDCHFMCTGKAMASSWLRE  243 (368)
Q Consensus       218 ~~g~~i~~d~vi~a~G~~p~~~~~~~  243 (368)
                           -.+|.||.++|.+|+.+.+..
T Consensus        65 -----~~~d~vV~Spgi~~~~p~~~~   85 (326)
T 3eag_A           65 -----FKADVYVIGNVAKRGMDVVEA   85 (326)
T ss_dssp             -----CCCSEEEECTTCCTTCHHHHH
T ss_pred             -----CCCCEEEECCCcCCCCHHHHH
Confidence                 148999999999988766553

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=95.16  E-value=0.018  Score=42.49  Aligned_cols=33  Identities=24%  Similarity=0.375  Sum_probs=29.0

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cC-CcEEEEcCCC
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SF-ADVVLIDEKE   48 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g-~~v~lie~~~   48 (368)
                      +++++|+|+|..|...+..|. .| ++|+++++++
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            458999999999999999887 57 8999999874

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=94.95  E-value=0.027  Score=52.84  Aligned_cols=45  Identities=18%  Similarity=0.254  Sum_probs=38.3

Q ss_pred             cCCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeecc
Q 017664           11 AGLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWA   55 (368)
Q Consensus        11 ~~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~   55 (368)
                      ..|++.+||+|||+|.+|+++|..|+ +|.+|+++|+++.+|+...
T Consensus        15 ~~~~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~   60 (475)
T 3p1w_A           15 YFQGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETA   60 (475)
T ss_dssp             --CCCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGC
T ss_pred             ccccccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCcc
Confidence            45667899999999999999999997 5999999999998886543

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=94.91  E-value=0.024  Score=50.20  Aligned_cols=45  Identities=11%  Similarity=0.042  Sum_probs=32.8

Q ss_pred             eeccCCcCCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664            5 LWGSTAAGLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus         5 ~~~~~~~~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      -|-...+...++++|.|||.|.-|...|..|. .|++|+++|+++.
T Consensus        10 ~~~~~~~~~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A           10 HSSGLVPRGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             --------CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             cccccCcccccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            45555566667789999999999999999987 5999999998753

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.85  E-value=0.034  Score=44.85  Aligned_cols=34  Identities=18%  Similarity=0.144  Sum_probs=30.3

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-c-CCcEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-S-FADVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~-g~~v~lie~~~   48 (368)
                      ...+++|+|+|..|...|..|. . |++|+++|+++
T Consensus        38 ~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           38 GHAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             TTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            3568999999999999999997 6 99999999875

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=94.78  E-value=0.025  Score=43.37  Aligned_cols=33  Identities=27%  Similarity=0.341  Sum_probs=29.2

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      +.+++|+|+|..|...|..|. .|++|+++|+++
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            457999999999999999997 599999999864

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=94.71  E-value=0.037  Score=46.27  Aligned_cols=35  Identities=17%  Similarity=0.258  Sum_probs=30.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      .+.++|+|||||..|...+..|. .|.+|+|++++.
T Consensus        29 L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~   64 (223)
T 3dfz_A           29 LKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTV   64 (223)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSC
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            34679999999999999999887 599999999864

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=94.35  E-value=0.015  Score=55.79  Aligned_cols=48  Identities=8%  Similarity=0.142  Sum_probs=41.4

Q ss_pred             EEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcC
Q 017664          256 LMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMG  305 (368)
Q Consensus       256 i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g  305 (368)
                      |..|+++|+.+.+++|.|||+++...  -...|..+|..+|+.|++.+.+
T Consensus       497 i~~~~~~~~~~~~gly~~GegaG~a~--gi~~Aa~~G~~~a~~i~~~~~~  544 (549)
T 3nlc_A          497 IKRGKDFQSVNLKGFYPAGEGAGYAG--GILSAGIDGIKVAEAVARDIVA  544 (549)
T ss_dssp             CCCTTTTSCTTCBTEEECHHHHTSCC--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCceECCcCCEEEccccCChhh--HHHHHHHHHHHHHHHHHHHhhh
Confidence            67888999878999999999998755  5678999999999999988754

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=94.07  E-value=0.05  Score=47.38  Aligned_cols=37  Identities=27%  Similarity=0.297  Sum_probs=31.7

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      |++..+|.|||+|.-|...|..|. .|++|+++|+++.
T Consensus         1 Mm~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (283)
T 4e12_A            1 MTGITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTD   38 (283)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            344578999999999999999887 5999999998863

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=94.02  E-value=0.034  Score=51.86  Aligned_cols=35  Identities=23%  Similarity=0.231  Sum_probs=30.5

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      +.++|+|||.|.+|+++|..|. +|++|++.|..+.
T Consensus         4 ~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~   39 (439)
T 2x5o_A            4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (439)
T ss_dssp             TTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSS
T ss_pred             CCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCC
Confidence            3468999999999999998887 5999999998764

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=94.02  E-value=0.071  Score=50.32  Aligned_cols=38  Identities=21%  Similarity=0.289  Sum_probs=34.6

Q ss_pred             CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeec
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITW   54 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~   54 (368)
                      +||+|||||++||+||+.|+ +|++|+|+|+++.+|+..
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~   78 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRS   78 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcc
Confidence            79999999999999999998 499999999999887543

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=93.97  E-value=0.051  Score=49.62  Aligned_cols=34  Identities=26%  Similarity=0.235  Sum_probs=30.5

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      ..+|+|||+|.+|+.+|..|+ .|.+|+++|+++.
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            568999999999999999887 4999999999863

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=93.91  E-value=0.053  Score=50.69  Aligned_cols=34  Identities=35%  Similarity=0.289  Sum_probs=30.6

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      +.++|.|||.|.+|+++|..|+ +|++|++.|.++
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            4578999999999999999887 699999999876

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=93.85  E-value=0.059  Score=47.37  Aligned_cols=34  Identities=41%  Similarity=0.506  Sum_probs=29.8

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      ..+|.|||+|.-|...|..|. .|++|+++|+++.
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   49 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   49 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            467999999999999999886 5999999998753

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=93.85  E-value=0.037  Score=46.07  Aligned_cols=32  Identities=31%  Similarity=0.434  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           18 KVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        18 ~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      +|+|+|+|..|...|..|. +|++|+++|+++.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~   34 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDRE   34 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            6999999999999999997 5999999998753

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=93.77  E-value=0.034  Score=47.99  Aligned_cols=34  Identities=24%  Similarity=0.460  Sum_probs=30.1

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      +.++|+|||||..|...+..|. .|++|+|++++.
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            4678999999999999999887 599999999764

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=93.61  E-value=0.059  Score=48.76  Aligned_cols=34  Identities=21%  Similarity=0.181  Sum_probs=30.3

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~   48 (368)
                      ...+|+|||+|..|+.+|..|+. |.+|+++|+++
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  217 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRP  217 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            35689999999999999999874 99999999875

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=93.56  E-value=0.077  Score=47.34  Aligned_cols=34  Identities=38%  Similarity=0.494  Sum_probs=29.6

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCC-cEEEEcCCCc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFA-DVVLIDEKEY   49 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~-~v~lie~~~~   49 (368)
                      +.+|.|||+|..|.+.|..|. +|+ +|+++|.++.
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~   44 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG   44 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            368999999999999999887 577 9999998763

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=93.48  E-value=0.054  Score=51.18  Aligned_cols=35  Identities=23%  Similarity=0.374  Sum_probs=29.5

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL  176 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~  176 (368)
                      |+|+|||+|.+|+-+|..|++  .|.+|+++++++++
T Consensus         2 k~VvVIGaG~~GL~aA~~La~--~G~~V~VlEa~~~~   36 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQA--AGIPVLLLEQRDKP   36 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHH--TTCCEEEECCC---
T ss_pred             CCEEEECCcHHHHHHHHHHHH--CCCcEEEEccCCCC
Confidence            689999999999999999986  48999999988764

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=93.38  E-value=0.066  Score=48.18  Aligned_cols=35  Identities=29%  Similarity=0.346  Sum_probs=29.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      +++++|.|||+|..|...|..|. .|++|+++++++
T Consensus         2 m~~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            2 IESKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCcCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            34568999999999999999987 599999999874

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=93.18  E-value=0.15  Score=48.15  Aligned_cols=60  Identities=18%  Similarity=0.236  Sum_probs=45.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccc----------C--------chhHHHHHHHHHcCCcEEE
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFV----------G--------SRASQIALDWLTSKKVEVI  200 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~----------~--------~~~~~~~~~~l~~~gv~i~  200 (368)
                      .++|+|||+|.+|+.+|..|.+.  +.+|+++++++++....          .        +.....+.+.+++.|+++.
T Consensus        33 ~~~v~IiGaG~~Gl~aA~~l~~~--g~~v~vlE~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~  110 (498)
T 2iid_A           33 PKHVVIVGAGMAGLSAAYVLAGA--GHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRLN  110 (498)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHH--TCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEETTCHHHHHHHHHTTCCEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC--CCeEEEEECCCCCCCceeeeccCCCCchhhcCcccccchHHHHHHHHHHhCCCce
Confidence            57899999999999999999864  78999999887653321          0        0113566778888888764

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=93.06  E-value=0.086  Score=47.67  Aligned_cols=35  Identities=26%  Similarity=0.432  Sum_probs=30.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFA-DVVLIDEKE   48 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~-~v~lie~~~   48 (368)
                      ....+|||+|||.||+.+|..|. .|. +|+++|++.
T Consensus       186 l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          186 LDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            34679999999999999999886 488 999999974

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=92.95  E-value=0.091  Score=46.05  Aligned_cols=37  Identities=24%  Similarity=0.169  Sum_probs=30.6

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      |+++++|.|||.|.-|...|..|. .|++|+++|+++.
T Consensus        12 M~~~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           12 TTEQLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             ---CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             ccCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            344578999999999999999987 5999999998863

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=92.90  E-value=0.11  Score=46.14  Aligned_cols=36  Identities=42%  Similarity=0.659  Sum_probs=30.6

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFA-DVVLIDEKE   48 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~-~v~lie~~~   48 (368)
                      |.++.+|.|||+|..|.+.|..|. .|+ +|+++|+++
T Consensus         1 M~~~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            1 MIERRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            334568999999999999999886 587 999999875

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=92.82  E-value=0.31  Score=46.00  Aligned_cols=78  Identities=14%  Similarity=0.165  Sum_probs=56.9

Q ss_pred             cCCeEEEEcCchhHHH-HHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEE
Q 017664          138 SANSVLIVGGGPTGVE-LAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIE  216 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e-~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~  216 (368)
                      ..+++.|+|-|-+|+. +|..|.+  .|.+|+..+....           ...+.|++.|++++.+.....+        
T Consensus        21 ~~~~v~viGiG~sG~s~~A~~l~~--~G~~V~~~D~~~~-----------~~~~~l~~~gi~~~~g~~~~~~--------   79 (494)
T 4hv4_A           21 RVRHIHFVGIGGAGMGGIAEVLAN--EGYQISGSDLAPN-----------SVTQHLTALGAQIYFHHRPENV--------   79 (494)
T ss_dssp             -CCEEEEETTTSTTHHHHHHHHHH--TTCEEEEECSSCC-----------HHHHHHHHTTCEEESSCCGGGG--------
T ss_pred             cCCEEEEEEEcHhhHHHHHHHHHh--CCCeEEEEECCCC-----------HHHHHHHHCCCEEECCCCHHHc--------
Confidence            4689999999999996 7887775  5899998876532           1245678889999877543211        


Q ss_pred             cCCCcEEecCEEEEccCCCCCchhhh
Q 017664          217 TSSGETIDTDCHFMCTGKAMASSWLR  242 (368)
Q Consensus       217 ~~~g~~i~~d~vi~a~G~~p~~~~~~  242 (368)
                            ..+|.||+++|.+++.+.+.
T Consensus        80 ------~~~d~vV~Spgi~~~~p~~~   99 (494)
T 4hv4_A           80 ------LDASVVVVSTAISADNPEIV   99 (494)
T ss_dssp             ------TTCSEEEECTTSCTTCHHHH
T ss_pred             ------CCCCEEEECCCCCCCCHHHH
Confidence                  13899999999988765543

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=92.63  E-value=0.17  Score=46.39  Aligned_cols=37  Identities=11%  Similarity=0.180  Sum_probs=31.7

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL  176 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~  176 (368)
                      ...+|+|||+|++|+-+|..|.+  .+.+|+++++.+..
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~--~G~~V~v~E~~~~~   58 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQ--SGIDCDVYEAVKEI   58 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCCCC
Confidence            35689999999999999999986  48899999998654

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=92.62  E-value=0.11  Score=46.20  Aligned_cols=32  Identities=22%  Similarity=0.333  Sum_probs=29.3

Q ss_pred             CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      ++|.|||+|.-|.+.|..|. .|++|+++++++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            58999999999999999997 499999999976

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=92.61  E-value=0.15  Score=47.53  Aligned_cols=35  Identities=26%  Similarity=0.408  Sum_probs=31.1

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      ...+|.|||+|.-|...|..|. .|++|+++|+++.
T Consensus        53 ~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           53 DVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            4468999999999999999887 5999999999875

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=92.61  E-value=0.19  Score=45.94  Aligned_cols=57  Identities=21%  Similarity=0.287  Sum_probs=40.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccC--chhHHHHHHHHHcCCc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVG--SRASQIALDWLTSKKV  197 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~--~~~~~~~~~~l~~~gv  197 (368)
                      ..+|+|||+|++|+.+|..|.+  .+.+|+++++.+.......  -.+.....+.+++.|+
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~   63 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRD--AGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGV   63 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTC
T ss_pred             CCcEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCCCCccccccccChhHHHHHHHcCC
Confidence            4689999999999999999986  4899999998866322111  1123444556666665

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=92.55  E-value=0.13  Score=44.31  Aligned_cols=34  Identities=24%  Similarity=0.426  Sum_probs=29.9

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRG  173 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~  173 (368)
                      .+++|+|||+|.+|...+..|.+  .+.+|+++.+.
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~--~Ga~VtViap~   45 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMP--TGCKLTLVSPD   45 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGG--GTCEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHh--CCCEEEEEcCC
Confidence            47899999999999999999985  48899999864

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=92.55  E-value=0.11  Score=46.98  Aligned_cols=34  Identities=29%  Similarity=0.429  Sum_probs=30.4

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEY   49 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~   49 (368)
                      +++|+|||||..|..+++.+++ |++++++|+++.
T Consensus         1 MK~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            1 MKTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            4689999999999999999985 999999998764

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=92.53  E-value=0.12  Score=46.10  Aligned_cols=35  Identities=29%  Similarity=0.131  Sum_probs=29.2

Q ss_pred             CCCcEEEECCChHHHH-HHHHhh-cCCcEEEEcCCCc
Q 017664           15 EKKKVVVIGGGVGGSL-LAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~-aA~~L~-~g~~v~lie~~~~   49 (368)
                      .+++|.|||.|.+||+ +|..|. +|++|++.|.++.
T Consensus         3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            4568999999999997 666665 6999999998753

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=92.46  E-value=0.14  Score=45.53  Aligned_cols=35  Identities=37%  Similarity=0.517  Sum_probs=29.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFA-DVVLIDEKE   48 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~-~v~lie~~~   48 (368)
                      +...+|.|||+|..|...|..|. +|+ +|+++|.++
T Consensus         2 ~~~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            2 APKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            34568999999999999999887 576 899999875

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=92.45  E-value=0.14  Score=46.10  Aligned_cols=35  Identities=23%  Similarity=0.251  Sum_probs=30.6

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      ++++|.|||+|.-|.+.|..|. .|++|+++++++.
T Consensus        28 ~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~   63 (356)
T 3k96_A           28 FKHPIAILGAGSWGTALALVLARKGQKVRLWSYESD   63 (356)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHH
T ss_pred             cCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            3568999999999999999997 5899999999753

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=92.41  E-value=0.13  Score=45.57  Aligned_cols=36  Identities=36%  Similarity=0.435  Sum_probs=30.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCC-cEEEEcCCCc
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFA-DVVLIDEKEY   49 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~-~v~lie~~~~   49 (368)
                      ++..+|.|||+|..|.+.|..|. +++ +++++|.++.
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~   42 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEG   42 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence            45678999999999999999886 566 9999998763

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=92.39  E-value=0.11  Score=47.60  Aligned_cols=34  Identities=32%  Similarity=0.249  Sum_probs=30.2

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      ..+|+|||+|.+|+.++..++ .|.+|+++|+++.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~  206 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  206 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            568999999999999999887 4999999998753

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=92.32  E-value=0.52  Score=44.82  Aligned_cols=84  Identities=10%  Similarity=-0.131  Sum_probs=57.3

Q ss_pred             HHHhcCCeEEEEcCchhHHHH-HHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCC
Q 017664          134 EKVKSANSVLIVGGGPTGVEL-AGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISD  212 (368)
Q Consensus       134 ~~~~~~~~v~VvG~g~~~~e~-a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~  212 (368)
                      ......+++.++|-|-+|+-. |..|.+  .|.+|+..+....     + .    ..+.|++.|++++.+.....+.   
T Consensus        14 ~~~~~~~~i~~iGiGg~Gms~lA~~l~~--~G~~V~~sD~~~~-----~-~----~~~~L~~~gi~~~~G~~~~~~~---   78 (524)
T 3hn7_A           14 NLYFQGMHIHILGICGTFMGSLALLARA--LGHTVTGSDANIY-----P-P----MSTQLEQAGVTIEEGYLIAHLQ---   78 (524)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHH--TTCEEEEEESCCC-----T-T----HHHHHHHTTCEEEESCCGGGGC---
T ss_pred             ceeecCCEEEEEEecHhhHHHHHHHHHh--CCCEEEEECCCCC-----c-H----HHHHHHHCCCEEECCCCHHHcC---
Confidence            345568999999999999974 555553  5899999987642     1 1    3456778899998775432110   


Q ss_pred             CeEEcCCCcEEecCEEEEccCCCCCchhhh
Q 017664          213 GLIETSSGETIDTDCHFMCTGKAMASSWLR  242 (368)
Q Consensus       213 ~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~  242 (368)
                                -.+|.||.++|..++.+.+.
T Consensus        79 ----------~~~d~vV~Spgi~~~~p~l~   98 (524)
T 3hn7_A           79 ----------PAPDLVVVGNAMKRGMDVIE   98 (524)
T ss_dssp             ----------SCCSEEEECTTCCTTSHHHH
T ss_pred             ----------CCCCEEEECCCcCCCCHHHH
Confidence                      14899999999988776554

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=92.30  E-value=0.12  Score=46.57  Aligned_cols=34  Identities=35%  Similarity=0.410  Sum_probs=30.1

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCC-cEEEEcCC
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFA-DVVLIDEK   47 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~-~v~lie~~   47 (368)
                      ....+|+|+|||.+|..+|+.|. .|. +|+++|++
T Consensus       190 l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          190 IEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            35679999999999999999887 487 89999997

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=92.28  E-value=0.12  Score=46.62  Aligned_cols=39  Identities=15%  Similarity=0.157  Sum_probs=30.4

Q ss_pred             CcCCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           10 AAGLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        10 ~~~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      .+.|+++++|.|||.|.-|...|..|. .|++|+++++++
T Consensus        16 ~~~Mm~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~   55 (358)
T 4e21_A           16 ENLYFQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV   55 (358)
T ss_dssp             ------CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             chhhhcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            356777789999999999999999987 599999999875

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=92.25  E-value=0.14  Score=47.12  Aligned_cols=33  Identities=30%  Similarity=0.484  Sum_probs=29.5

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      .+|+|||+|++|+-+|..|++  .+.+|+++++.+
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~--~G~~V~v~E~~~   38 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNK--SGFKVKIVEKQK   38 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHT--TTCCEEEECSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCC
Confidence            479999999999999999985  588999999875

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=92.19  E-value=0.13  Score=46.86  Aligned_cols=34  Identities=26%  Similarity=0.243  Sum_probs=30.2

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      ...+|+|||+|.+|+.++..++ .|.+|+++|+.+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~  205 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA  205 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4578999999999999999887 499999999875

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=92.13  E-value=0.14  Score=46.40  Aligned_cols=93  Identities=16%  Similarity=0.224  Sum_probs=66.8

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc------cC---------------------------------
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF------VG---------------------------------  181 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~------~~---------------------------------  181 (368)
                      .|+|||+|++|+-+|..|++  .|.+|+++++.+.+...      +.                                 
T Consensus         6 DViIVGaGpaGl~~A~~La~--~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAK--YGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRP   83 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSSC
T ss_pred             CEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeCCCceE
Confidence            58999999999999999996  48999999986532100      00                                 


Q ss_pred             ------------------chhHHHHHHHHHcCCcEEEecceeeecccCCCe---EE-cCCC--cEEecCEEEEccCCC
Q 017664          182 ------------------SRASQIALDWLTSKKVEVILNQSVTLNTISDGL---IE-TSSG--ETIDTDCHFMCTGKA  235 (368)
Q Consensus       182 ------------------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~---v~-~~~g--~~i~~d~vi~a~G~~  235 (368)
                                        ..+...+.+.+++.|++++.++.+..+..+++.   +. ..++  .++.+|+||-|.|..
T Consensus        84 ~~~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~  161 (397)
T 3oz2_A           84 IILQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAADGFE  161 (397)
T ss_dssp             EEEECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECCCTT
T ss_pred             eeccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeecccccceEEEEeEEEeCCccc
Confidence                              112233556677889999999999887766652   22 2233  368999999999965

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=92.11  E-value=0.14  Score=45.61  Aligned_cols=32  Identities=13%  Similarity=0.346  Sum_probs=28.9

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCC
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEK   47 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~   47 (368)
                      .++|.|||+|.-|.+.|..|. .|++|++++++
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            458999999999999999997 58999999985

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=92.05  E-value=0.15  Score=48.96  Aligned_cols=36  Identities=25%  Similarity=0.425  Sum_probs=31.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhC-CCCeEEEEecCc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDF-PDKKVILVHRGP  174 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~-~~~~v~~i~~~~  174 (368)
                      ..+|+|||+|..|+-+|..|++.. .+.+|+++++.+
T Consensus        25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   61 (550)
T 2e4g_A           25 IDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPD   61 (550)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence            568999999999999999999744 688999999864

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=92.04  E-value=0.17  Score=44.63  Aligned_cols=37  Identities=19%  Similarity=0.158  Sum_probs=31.1

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      ++...+|.|||+|.-|...|..|. .|++|+++++++.
T Consensus        27 ~~~~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~   64 (316)
T 2uyy_A           27 TPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE   64 (316)
T ss_dssp             CCCSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGG
T ss_pred             CCCCCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            334578999999999999999887 5899999998753

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=91.94  E-value=0.1  Score=40.18  Aligned_cols=33  Identities=18%  Similarity=0.240  Sum_probs=29.1

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      ..+++|||+|..|...+..|. .|.+|+++++++
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            568999999999999999887 588899999874

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=91.93  E-value=0.12  Score=45.52  Aligned_cols=32  Identities=22%  Similarity=0.371  Sum_probs=28.6

Q ss_pred             CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      ++|.|||+|.-|.+.|..|. .|++|+++++++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            57999999999999999997 589999999975

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=91.93  E-value=0.13  Score=45.13  Aligned_cols=32  Identities=34%  Similarity=0.460  Sum_probs=28.9

Q ss_pred             CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      ++|.|||+|..|.+.|..|. .|++|+++++++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            47999999999999999987 599999999875

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=91.92  E-value=0.22  Score=45.16  Aligned_cols=36  Identities=22%  Similarity=0.298  Sum_probs=31.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL  176 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~  176 (368)
                      ..+|+|||+|++|+.+|..|.+  .+.+|+++++.+..
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~--~G~~v~viE~~~~~   46 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQ--NGWDVRLHEKSSEL   46 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--CCCCEEEEecCCCC
Confidence            4689999999999999999986  48899999987654

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=91.86  E-value=0.25  Score=47.76  Aligned_cols=35  Identities=26%  Similarity=0.405  Sum_probs=30.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK  175 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~  175 (368)
                      ..+|+|||||++|+-+|..|++  .+.+|+++++.+.
T Consensus        23 ~~DVvIVGgG~AGl~aA~~Lar--~G~~V~LiEr~~~   57 (591)
T 3i3l_A           23 RSKVAIIGGGPAGSVAGLTLHK--LGHDVTIYERSAF   57 (591)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHc--CCCCEEEEcCCCC
Confidence            5789999999999999999986  4889999998753

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=91.85  E-value=0.18  Score=45.92  Aligned_cols=37  Identities=22%  Similarity=0.421  Sum_probs=31.7

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCc
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEY   49 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~   49 (368)
                      ....++|+|||+|..|..++..+++ |++|.++|+++.
T Consensus        11 ~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~   48 (389)
T 3q2o_A           11 ILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKN   48 (389)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence            3456789999999999999999984 999999998653

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=91.84  E-value=0.091  Score=43.81  Aligned_cols=37  Identities=19%  Similarity=0.228  Sum_probs=30.8

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEE-EcCCCc
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVL-IDEKEY   49 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~l-ie~~~~   49 (368)
                      ++++++|.|||+|.-|.+.|..|. .|++|++ +++++.
T Consensus        20 ~m~mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~   58 (220)
T 4huj_A           20 FQSMTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPA   58 (220)
T ss_dssp             GGGSCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGG
T ss_pred             hhcCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHH
Confidence            344578999999999999999987 5999999 887653

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=91.74  E-value=0.16  Score=46.83  Aligned_cols=34  Identities=24%  Similarity=0.183  Sum_probs=30.7

Q ss_pred             CCcEEEECCChHHHHHHHHhhcCCcEEEEcCCCc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEY   49 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~g~~v~lie~~~~   49 (368)
                      .++|.|||+|..|+..|..|++|++|+++|+++.
T Consensus        36 ~mkIaVIGlG~mG~~lA~~La~G~~V~~~D~~~~   69 (432)
T 3pid_A           36 FMKITISGTGYVGLSNGVLIAQNHEVVALDIVQA   69 (432)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSEEEEECSCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHcCCeEEEEecCHH
Confidence            4689999999999999998888999999998854

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=91.69  E-value=0.18  Score=41.63  Aligned_cols=34  Identities=15%  Similarity=0.275  Sum_probs=29.6

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      ..+|.|||+|..|.+.|..|. .|++|+++++++.
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            468999999999999999987 5999999998764

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=91.67  E-value=0.19  Score=46.51  Aligned_cols=39  Identities=21%  Similarity=0.043  Sum_probs=33.3

Q ss_pred             cCCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           11 AGLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        11 ~~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      |.-.++.+|.|||.|+.||..|..|+ +|++|+.+|-++.
T Consensus        16 p~~~~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~   55 (444)
T 3vtf_A           16 PRGSHMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPS   55 (444)
T ss_dssp             CTTCCCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred             CCCCCCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence            44456779999999999999999887 6999999998753

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=91.59  E-value=0.2  Score=45.68  Aligned_cols=33  Identities=27%  Similarity=0.403  Sum_probs=30.3

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      ++||+|||||+||+.||..|+ +|.+|+|+|+++
T Consensus         1 m~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~   34 (443)
T 3g5s_A            1 MERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP   34 (443)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CCCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence            369999999999999999997 599999999876

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=91.50  E-value=0.2  Score=47.33  Aligned_cols=36  Identities=25%  Similarity=0.408  Sum_probs=31.1

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL  176 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~  176 (368)
                      ..|+|||+|.+|+-+|..|+++ .+.+|+++++++++
T Consensus        11 ~DVvIIGaGisGLsaA~~L~k~-~G~~V~VlE~~~~~   46 (513)
T 4gde_A           11 VDVLVIGAGPTGLGAAKRLNQI-DGPSWMIVDSNETP   46 (513)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHH-CCSCEEEEESSSSC
T ss_pred             CCEEEECCcHHHHHHHHHHHhh-CCCCEEEEECCCCC
Confidence            4699999999999999999863 58899999988765

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=91.48  E-value=0.19  Score=46.69  Aligned_cols=79  Identities=19%  Similarity=0.130  Sum_probs=54.9

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEc
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIET  217 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~  217 (368)
                      .+++++|+|.|.+|+..|..|.+  .|.+|+..+......     ..     ..++ .|++++.+.....      .+  
T Consensus         4 ~~~~v~viG~G~~G~~~a~~l~~--~G~~v~~~D~~~~~~-----~~-----~~l~-~G~~~~~g~~~~~------~~--   62 (439)
T 2x5o_A            4 QGKNVVIIGLGLTGLSCVDFFLA--RGVTPRVMDTRMTPP-----GL-----DKLP-EAVERHTGSLNDE------WL--   62 (439)
T ss_dssp             TTCCEEEECCHHHHHHHHHHHHT--TTCCCEEEESSSSCT-----TG-----GGSC-TTSCEEESSCCHH------HH--
T ss_pred             CCCEEEEEeecHHHHHHHHHHHh--CCCEEEEEECCCCcc-----hh-----HHhh-CCCEEEECCCcHH------Hh--
Confidence            46899999999999999988774  588999998765421     00     3345 7888876653210      00  


Q ss_pred             CCCcEEecCEEEEccCCCCCchhhh
Q 017664          218 SSGETIDTDCHFMCTGKAMASSWLR  242 (368)
Q Consensus       218 ~~g~~i~~d~vi~a~G~~p~~~~~~  242 (368)
                          . .+|.||+++|.+|+.+.+.
T Consensus        63 ----~-~~d~vV~s~gi~~~~p~~~   82 (439)
T 2x5o_A           63 ----M-AADLIVASPGIALAHPSLS   82 (439)
T ss_dssp             ----H-TCSEEEECTTSCTTCHHHH
T ss_pred             ----c-cCCEEEeCCCCCCCCHHHH
Confidence                1 3799999999887655444

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=91.46  E-value=0.17  Score=42.37  Aligned_cols=37  Identities=19%  Similarity=0.231  Sum_probs=29.6

Q ss_pred             CCCCCCcEEEECC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           12 GLVEKKKVVVIGG-GVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        12 ~~~~~~~vvIIGa-G~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      ...+.++|+|.|| |.-|...+..|. +|++|+++.+++
T Consensus        17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            3445678999997 999999999886 699999999875

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=91.41  E-value=0.18  Score=44.56  Aligned_cols=33  Identities=36%  Similarity=0.474  Sum_probs=29.0

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCC--cEEEEcCCC
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFA--DVVLIDEKE   48 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~--~v~lie~~~   48 (368)
                      +++|+|||+|..|.+.|..|. .|+  +|+++|+++
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            358999999999999999887 577  999999875

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=91.40  E-value=0.15  Score=46.87  Aligned_cols=34  Identities=21%  Similarity=0.253  Sum_probs=30.6

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      +.+|+|||.|..|...|..|. .|.+|++||+++.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~   38 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD   38 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            457999999999999999998 5999999999864

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=91.34  E-value=0.18  Score=45.59  Aligned_cols=33  Identities=36%  Similarity=0.380  Sum_probs=29.5

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      ..+|+|+|+|.+|++++..|+ .|.+|+++++++
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            478999999999999999887 589999999874

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=91.30  E-value=0.094  Score=48.69  Aligned_cols=45  Identities=22%  Similarity=0.369  Sum_probs=39.0

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccce
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASL   57 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~   57 (368)
                      |++.+|++|||||++|+++|..|+ +|.+|+|+|+++.+|+.....
T Consensus         3 ~~~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s~   48 (433)
T 1d5t_A            3 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI   48 (433)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCEE
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCcccccccc
Confidence            566789999999999999999998 499999999999888665443

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=91.25  E-value=0.19  Score=43.56  Aligned_cols=32  Identities=22%  Similarity=0.118  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           18 KVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        18 ~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      +|.|||+|..|.+.|..|. .|++|+++++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            6999999999999999987 5999999998763

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=91.22  E-value=0.14  Score=46.19  Aligned_cols=32  Identities=31%  Similarity=0.440  Sum_probs=28.7

Q ss_pred             CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      .+|.|||+|.-|.+.|..|. .|++|+++++++
T Consensus        16 ~kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           16 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            38999999999999999987 489999999875

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=91.16  E-value=0.16  Score=44.37  Aligned_cols=32  Identities=34%  Similarity=0.591  Sum_probs=29.0

Q ss_pred             CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      ++|.|||+|.-|.+.|..|. .|++|+++++++
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            57999999999999999997 599999999974

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=91.13  E-value=0.31  Score=46.45  Aligned_cols=35  Identities=37%  Similarity=0.524  Sum_probs=30.7

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL  176 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~  176 (368)
                      .+|+|||+|++|+-+|..|.+  .+.+|+++++.+..
T Consensus         6 ~dVlIVGaG~aGl~~A~~La~--~G~~v~viEr~~~~   40 (535)
T 3ihg_A            6 VDVLVVGAGLGGLSTAMFLAR--QGVRVLVVERRPGL   40 (535)
T ss_dssp             EEEEEECCSHHHHHHHHHHHT--TTCCEEEECSSSSC
T ss_pred             CcEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCCC
Confidence            479999999999999999985  48899999988654

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=91.09  E-value=0.22  Score=46.49  Aligned_cols=46  Identities=22%  Similarity=0.291  Sum_probs=39.4

Q ss_pred             cCCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccc
Q 017664           11 AGLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWAS   56 (368)
Q Consensus        11 ~~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~   56 (368)
                      ..|+..+||||||||++||+||..|+ +|++|+|+|+++.+|+....
T Consensus         6 ~~~~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   52 (453)
T 2bcg_G            6 ETIDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAAS   52 (453)
T ss_dssp             -CCCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred             hhccccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccc
Confidence            34556789999999999999999998 49999999999999876544

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=91.07  E-value=0.26  Score=46.57  Aligned_cols=37  Identities=38%  Similarity=0.690  Sum_probs=31.9

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL  176 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~  176 (368)
                      ...+|+|||+|++|+-+|..|.+  .+.+|+++++.+..
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~--~G~~v~vlE~~~~~   47 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRL--GGVDVMVLEQLPQR   47 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESCSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCCCC
Confidence            35679999999999999999986  48999999987654

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=91.04  E-value=0.3  Score=44.46  Aligned_cols=35  Identities=29%  Similarity=0.347  Sum_probs=30.6

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL  176 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~  176 (368)
                      .+|+|||+|++|+.+|..|.+  .+.+|+++++.+..
T Consensus         7 ~dVvIVGaG~aGl~~A~~L~~--~G~~V~viE~~~~~   41 (399)
T 2x3n_A            7 IDVLINGCGIGGAMLAYLLGR--QGHRVVVVEQARRE   41 (399)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSCCC
T ss_pred             CCEEEECcCHHHHHHHHHHHh--CCCcEEEEeCCCCC
Confidence            479999999999999999986  48899999987654

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=90.95  E-value=0.19  Score=44.33  Aligned_cols=34  Identities=26%  Similarity=0.261  Sum_probs=29.0

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFA-DVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~-~v~lie~~~   48 (368)
                      .+++|.|||.|.-|...|..|. .|+ +|+++|+++
T Consensus        23 ~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~   58 (312)
T 3qsg_A           23 NAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAAS   58 (312)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSC
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            3578999999999999999987 599 999999863

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=90.93  E-value=0.26  Score=42.59  Aligned_cols=34  Identities=21%  Similarity=0.190  Sum_probs=29.7

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      +++|+|.|+|+-|...+..|. +|++|+++.++..
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            467999999999999999886 6999999998753

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=90.89  E-value=0.22  Score=43.82  Aligned_cols=32  Identities=34%  Similarity=0.641  Sum_probs=29.2

Q ss_pred             CcEEEECCChHHHHHHHHhhcCCcEEEEcCCC
Q 017664           17 KKVVVIGGGVGGSLLAYHIQSFADVVLIDEKE   48 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~~g~~v~lie~~~   48 (368)
                      ++|.|||+|.-|.+.|..|..|.+|+++++++
T Consensus         3 mkI~IiGaGa~G~~~a~~L~~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLSLYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCceEEEECCH
Confidence            58999999999999999888889999999875

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=90.88  E-value=0.2  Score=46.98  Aligned_cols=36  Identities=22%  Similarity=0.130  Sum_probs=31.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-c-CC-cEEEEcCCCc
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-S-FA-DVVLIDEKEY   49 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~-g~-~v~lie~~~~   49 (368)
                      ...++|.|||+|.-|+..|..|. . |+ +|+++|+++.
T Consensus        16 ~~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           16 GPIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CSCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            34568999999999999999886 7 89 9999999875

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=90.87  E-value=0.58  Score=43.67  Aligned_cols=79  Identities=11%  Similarity=-0.001  Sum_probs=53.5

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEc
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIET  217 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~  217 (368)
                      .+++++|||+|.+|...+..|.+  .+.+|+++.+...          ..+.+..++.+++++.+..-    .       
T Consensus        11 ~~~~vlVvGgG~va~~k~~~L~~--~ga~V~vi~~~~~----------~~~~~l~~~~~i~~~~~~~~----~-------   67 (457)
T 1pjq_A           11 RDRDCLIVGGGDVAERKARLLLE--AGARLTVNALTFI----------PQFTVWANEGMLTLVEGPFD----E-------   67 (457)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHH--TTBEEEEEESSCC----------HHHHHHHTTTSCEEEESSCC----G-------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--CcCEEEEEcCCCC----------HHHHHHHhcCCEEEEECCCC----c-------
Confidence            47899999999999999999986  4889999986421          13344445567887754321    0       


Q ss_pred             CCCcEEecCEEEEccCCCC-Cchhh
Q 017664          218 SSGETIDTDCHFMCTGKAM-ASSWL  241 (368)
Q Consensus       218 ~~g~~i~~d~vi~a~G~~p-~~~~~  241 (368)
                        +..-.+|+||.+||... |....
T Consensus        68 --~~l~~~~lVi~at~~~~~n~~i~   90 (457)
T 1pjq_A           68 --TLLDSCWLAIAATDDDTVNQRVS   90 (457)
T ss_dssp             --GGGTTCSEEEECCSCHHHHHHHH
T ss_pred             --cccCCccEEEEcCCCHHHHHHHH
Confidence              11114899999999763 44333

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=90.85  E-value=0.27  Score=46.47  Aligned_cols=37  Identities=35%  Similarity=0.649  Sum_probs=31.6

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL  176 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~  176 (368)
                      ...+|+|||+|++|+-+|..|.+  .+.+|.++++.+..
T Consensus        10 ~~~dVlIVGaGpaGl~~A~~La~--~G~~v~vlE~~~~~   46 (500)
T 2qa1_A           10 SDAAVIVVGAGPAGMMLAGELRL--AGVEVVVLERLVER   46 (500)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESCCC-
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCCC
Confidence            45689999999999999999986  48999999987654

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=90.83  E-value=0.2  Score=45.22  Aligned_cols=34  Identities=26%  Similarity=0.434  Sum_probs=29.6

Q ss_pred             CCCcEEEECCChHHHHHHHHhhcCCcEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~g~~v~lie~~~   48 (368)
                      ++++|+|+|||..|-.+|..|++.++|++.+++.
T Consensus        15 ~~mkilvlGaG~vG~~~~~~L~~~~~v~~~~~~~   48 (365)
T 3abi_A           15 RHMKVLILGAGNIGRAIAWDLKDEFDVYIGDVNN   48 (365)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTTTSEEEEEESCH
T ss_pred             CccEEEEECCCHHHHHHHHHHhcCCCeEEEEcCH
Confidence            4568999999999999999999889999988764

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=90.82  E-value=0.3  Score=45.61  Aligned_cols=39  Identities=33%  Similarity=0.557  Sum_probs=34.5

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-CC--cEEEEcCCCceeeec
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-FA--DVVLIDEKEYFEITW   54 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g~--~v~lie~~~~~~~~~   54 (368)
                      ++||+|||||++||+||++|++ |.  +|+|+|+++..|+..
T Consensus         2 ~~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~   43 (477)
T 3nks_A            2 GRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWI   43 (477)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTC
T ss_pred             CceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCce
Confidence            4699999999999999999985 88  999999998877543

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=90.82  E-value=0.23  Score=45.93  Aligned_cols=34  Identities=24%  Similarity=0.297  Sum_probs=29.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      .++|+|||+|+.|+-+|..|++  .+.+|+++++.+
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~--~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQ--HDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHH--TTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHH--CCCeEEEEcCCC
Confidence            4689999999999999999996  489999999765

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=90.81  E-value=0.22  Score=42.22  Aligned_cols=37  Identities=19%  Similarity=0.213  Sum_probs=30.4

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      ....++|.|||+|.-|.+.|..|. .|++|+++++++.
T Consensus        16 ~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~   53 (245)
T 3dtt_A           16 YFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPK   53 (245)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            345678999999999999999987 5999999998753

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=90.75  E-value=0.22  Score=44.19  Aligned_cols=38  Identities=16%  Similarity=0.038  Sum_probs=29.2

Q ss_pred             cCCCCCCcEEEECCChHHHHHHHHhh-cC----CcEEEEcCCC
Q 017664           11 AGLVEKKKVVVIGGGVGGSLLAYHIQ-SF----ADVVLIDEKE   48 (368)
Q Consensus        11 ~~~~~~~~vvIIGaG~aGl~aA~~L~-~g----~~v~lie~~~   48 (368)
                      +.++++++|.|||+|.-|.+.|..|. .|    ++|+++++++
T Consensus        17 ~~~~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           17 NLYFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM   59 (322)
T ss_dssp             -----CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred             hhccCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence            34555668999999999999999987 47    7999999875

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=90.72  E-value=0.25  Score=43.59  Aligned_cols=33  Identities=42%  Similarity=0.618  Sum_probs=29.4

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCC-cEEEEcCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFA-DVVLIDEK   47 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~-~v~lie~~   47 (368)
                      +..+|.|||+|..|.+.|..|. .++ +|+++|.+
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            4578999999999999999886 588 99999987

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=90.64  E-value=0.26  Score=45.26  Aligned_cols=35  Identities=17%  Similarity=0.362  Sum_probs=30.5

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL  176 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~  176 (368)
                      ++|+|||+|.+|+-+|..|.+  .+.+|+++++++++
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~--~G~~V~vlE~~~~~   35 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLAR--NGHEIIVLEKSAMI   35 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHH--TTCEEEEECSSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCC
Confidence            379999999999999999986  47899999987654

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=90.64  E-value=0.19  Score=44.34  Aligned_cols=34  Identities=24%  Similarity=0.254  Sum_probs=29.1

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      ..+|.|||+|.-|...|..+. .|++|+++|.++.
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~   40 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPR   40 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            458999999999999998765 6999999998864

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=90.60  E-value=0.15  Score=42.89  Aligned_cols=35  Identities=17%  Similarity=0.199  Sum_probs=28.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      ..+.+++|+|+|..|...|..|. .|+ |+++|+++.
T Consensus         7 ~~~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~   42 (234)
T 2aef_A            7 AKSRHVVICGWSESTLECLRELRGSEV-FVLAEDENV   42 (234)
T ss_dssp             ---CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGG
T ss_pred             CCCCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHH
Confidence            34568999999999999999997 488 999998753

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=90.58  E-value=0.07  Score=47.46  Aligned_cols=47  Identities=13%  Similarity=0.275  Sum_probs=34.9

Q ss_pred             ceeeeccCCcCCCCCCcEEEECCChHHHHHHHHhhc-CC-cEEEEcCCC
Q 017664            2 CVWLWGSTAAGLVEKKKVVVIGGGVGGSLLAYHIQS-FA-DVVLIDEKE   48 (368)
Q Consensus         2 ~~~~~~~~~~~~~~~~~vvIIGaG~aGl~aA~~L~~-g~-~v~lie~~~   48 (368)
                      -|++|....-..-+..+|+|||+|-.|..+|..|.+ |. +++|+|...
T Consensus        20 ~wRll~~~g~~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           20 KWRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             HHHTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             HHhhcchhhHHHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            345554433233356799999999999999999985 64 799999764

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=90.58  E-value=0.21  Score=46.78  Aligned_cols=37  Identities=30%  Similarity=0.345  Sum_probs=30.9

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-c--CCcEEEEcCCCc
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-S--FADVVLIDEKEY   49 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~--g~~v~lie~~~~   49 (368)
                      |.++++|.|||.|..|+..|..|. .  |++|+++|+++.
T Consensus         2 M~~~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~   41 (467)
T 2q3e_A            2 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNES   41 (467)
T ss_dssp             CCCCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHH
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence            344468999999999999999886 5  799999998753

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=90.49  E-value=0.21  Score=41.42  Aligned_cols=35  Identities=29%  Similarity=0.303  Sum_probs=29.6

Q ss_pred             CCCCcEEEECC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           14 VEKKKVVVIGG-GVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        14 ~~~~~vvIIGa-G~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      .++++|+|.|| |..|...+..|. +|++|+++++++
T Consensus         2 ~~m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~   38 (227)
T 3dhn_A            2 EKVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHP   38 (227)
T ss_dssp             -CCCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCG
T ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCc
Confidence            34568999995 999999999886 599999999975

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=90.46  E-value=0.23  Score=46.31  Aligned_cols=33  Identities=27%  Similarity=0.223  Sum_probs=29.7

Q ss_pred             CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      ++|.|||+|..|+..|..|. .|++|+++|+++.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~   36 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRN   36 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHH
Confidence            58999999999999999987 5999999998853

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=90.42  E-value=0.23  Score=46.70  Aligned_cols=34  Identities=21%  Similarity=0.264  Sum_probs=30.3

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      .++|.|||+|..|+..|..|. .|++|+++|+++.
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~   42 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQA   42 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            568999999999999999987 5999999998753

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=90.40  E-value=0.25  Score=41.97  Aligned_cols=33  Identities=21%  Similarity=0.294  Sum_probs=29.2

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-CC-cEEEEcCCC
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-FA-DVVLIDEKE   48 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g~-~v~lie~~~   48 (368)
                      ..+|+|||+|-.|..+|..|.+ |. +++|+|++.
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            5689999999999999999975 86 899999875

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=90.40  E-value=0.39  Score=46.23  Aligned_cols=35  Identities=31%  Similarity=0.604  Sum_probs=30.2

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL  176 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~  176 (368)
                      ..|+|||+|++|+-+|..|.+  .+.+|+++++.+..
T Consensus        50 ~DVvIVGaG~aGL~~A~~La~--~G~~V~VlEr~~~~   84 (570)
T 3fmw_A           50 TDVVVVGGGPVGLMLAGELRA--GGVGALVLEKLVEP   84 (570)
T ss_dssp             -CEEEECCSHHHHHHHHHHHH--TTCCEEEEBSCSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHH--CCCCEEEEcCCCCC
Confidence            479999999999999999986  48899999987654

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=90.33  E-value=0.14  Score=45.27  Aligned_cols=44  Identities=16%  Similarity=-0.007  Sum_probs=32.9

Q ss_pred             eeccCCcCCCCCCcEEEECCChHHHHHHHHhh-cC-CcEEEEcCCC
Q 017664            5 LWGSTAAGLVEKKKVVVIGGGVGGSLLAYHIQ-SF-ADVVLIDEKE   48 (368)
Q Consensus         5 ~~~~~~~~~~~~~~vvIIGaG~aGl~aA~~L~-~g-~~v~lie~~~   48 (368)
                      +|......+...++|.|||.|.-|.+.|..|. .| ++|+++++++
T Consensus        13 ~~~~~~~~~~M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           13 LGTENLYFQSMMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             --CCCHHHHTSCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             cCcccCcccccCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            44443332233468999999999999999987 48 9999999875

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=90.27  E-value=0.3  Score=43.37  Aligned_cols=33  Identities=36%  Similarity=0.411  Sum_probs=29.0

Q ss_pred             CcEEEECCChHHHHHHHHhh-cCC-cEEEEcCCCc
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SFA-DVVLIDEKEY   49 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g~-~v~lie~~~~   49 (368)
                      .+|.|||+|..|.+.|..|. +|+ +|+++|.++.
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~   49 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEG   49 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHH
Confidence            58999999999999998887 577 8999998763

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=90.24  E-value=0.2  Score=46.75  Aligned_cols=34  Identities=15%  Similarity=0.138  Sum_probs=30.1

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      +.++|+|||+|..|...+..|. .|.+|+|++++.
T Consensus        11 ~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~   45 (457)
T 1pjq_A           11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (457)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC
Confidence            4578999999999999999887 599999999864

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=90.22  E-value=0.28  Score=40.64  Aligned_cols=34  Identities=29%  Similarity=0.221  Sum_probs=28.6

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      +..+|.|||+|..|.+.|..|. .|++|+++++++
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3468999999999999999887 589999999864

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=90.19  E-value=0.79  Score=34.82  Aligned_cols=76  Identities=16%  Similarity=0.290  Sum_probs=50.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcC
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETS  218 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~  218 (368)
                      .++++|+|.|..|..+|..|.+  .+.+|+++++++.        .    .+.+++.|+.++.+..-.     ...+...
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~--~g~~v~vid~~~~--------~----~~~~~~~g~~~i~gd~~~-----~~~l~~a   67 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLA--SDIPLVVIETSRT--------R----VDELRERGVRAVLGNAAN-----EEIMQLA   67 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHH--TTCCEEEEESCHH--------H----HHHHHHTTCEEEESCTTS-----HHHHHHT
T ss_pred             CCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCHH--------H----HHHHHHcCCCEEECCCCC-----HHHHHhc
Confidence            4689999999999999999985  4789999997653        1    233445788776543110     0011101


Q ss_pred             CCcEEecCEEEEccCCC
Q 017664          219 SGETIDTDCHFMCTGKA  235 (368)
Q Consensus       219 ~g~~i~~d~vi~a~G~~  235 (368)
                       + .-.+|.+|++++..
T Consensus        68 -~-i~~ad~vi~~~~~~   82 (140)
T 3fwz_A           68 -H-LECAKWLILTIPNG   82 (140)
T ss_dssp             -T-GGGCSEEEECCSCH
T ss_pred             -C-cccCCEEEEECCCh
Confidence             1 12589999998755

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=90.19  E-value=0.23  Score=43.40  Aligned_cols=35  Identities=26%  Similarity=0.215  Sum_probs=29.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      .++.+|.|||+|..|...|..|. .|++|+++++++
T Consensus         2 ~~~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            2 EKSIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             --CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            34568999999999999999887 589999999864

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=90.17  E-value=0.26  Score=44.61  Aligned_cols=34  Identities=29%  Similarity=0.370  Sum_probs=30.0

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      ...+|+|+|+|..|..+|..|+ .|.+|+++|+++
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            3478999999999999999887 599999999874

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=90.16  E-value=0.34  Score=37.67  Aligned_cols=40  Identities=20%  Similarity=0.335  Sum_probs=31.6

Q ss_pred             HHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 017664          134 EKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK  175 (368)
Q Consensus       134 ~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~  175 (368)
                      .......+++|+|+|..|..++..|.+  .+.+|+++++++.
T Consensus        14 ~~~~~~~~v~IiG~G~iG~~la~~L~~--~g~~V~vid~~~~   53 (155)
T 2g1u_A           14 SKKQKSKYIVIFGCGRLGSLIANLASS--SGHSVVVVDKNEY   53 (155)
T ss_dssp             ---CCCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCGG
T ss_pred             hcccCCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEECCHH
Confidence            334457899999999999999999985  4679999988754

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=90.08  E-value=0.31  Score=44.69  Aligned_cols=35  Identities=20%  Similarity=0.334  Sum_probs=30.6

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL  176 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~  176 (368)
                      .+|+|||+|.+|+-+|..|++  .+.+|+++++++++
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~--~G~~V~vlE~~~~~   35 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSK--AGHEVEVFERLPIT   35 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHH--TTCEEEEECSSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHh--CCCceEEEeCCCCC
Confidence            369999999999999999996  47999999987654

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=90.06  E-value=0.22  Score=48.80  Aligned_cols=33  Identities=24%  Similarity=0.497  Sum_probs=30.1

Q ss_pred             CCcEEEECCChHHHHHHHHhh-c------CCcEEEEcCCC
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-S------FADVVLIDEKE   48 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~------g~~v~lie~~~   48 (368)
                      .+||||||||+|||+||..|+ .      |.+|+||||..
T Consensus        22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~   61 (662)
T 3gyx_A           22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKAS   61 (662)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSC
T ss_pred             EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecC
Confidence            589999999999999999997 3      89999999975

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=90.04  E-value=0.3  Score=43.16  Aligned_cols=33  Identities=33%  Similarity=0.560  Sum_probs=28.1

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCC--cEEEEcCCC
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFA--DVVLIDEKE   48 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~--~v~lie~~~   48 (368)
                      +.+|.|||+|..|.+.|..|. ++.  ++.++|.++
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            468999999999999999887 455  899999864

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=90.00  E-value=0.29  Score=42.25  Aligned_cols=33  Identities=9%  Similarity=0.133  Sum_probs=29.3

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      +++|+|.|||+-|...+..|. +|++|+++.+++
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            357999999999999999986 699999999875

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=89.91  E-value=0.28  Score=43.18  Aligned_cols=32  Identities=34%  Similarity=0.526  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHhhc---CCcEEEEcCCCc
Q 017664           18 KVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEY   49 (368)
Q Consensus        18 ~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~   49 (368)
                      +|.|||+|..|.+.|..|..   +.+|+++|+++.
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~   36 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChh
Confidence            69999999999999998863   789999999763

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=89.88  E-value=0.28  Score=44.51  Aligned_cols=34  Identities=35%  Similarity=0.337  Sum_probs=30.1

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      ...+|+|||+|..|..+|..++ .|.+|+++|+++
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            4578999999999999999887 599999999874

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=89.75  E-value=0.37  Score=42.67  Aligned_cols=35  Identities=34%  Similarity=0.399  Sum_probs=29.5

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCC-cEEEEcCCCc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFA-DVVLIDEKEY   49 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~-~v~lie~~~~   49 (368)
                      +..+|.|||+|..|.+.|..|. ++. ++.++|.++.
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~   40 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQG   40 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChH
Confidence            3568999999999999999886 466 9999998763

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=89.71  E-value=0.09  Score=50.38  Aligned_cols=48  Identities=15%  Similarity=0.300  Sum_probs=36.1

Q ss_pred             CceeeeccCCcCCCCCCcEEEECCChHHHHHHHHhhc-CC-cEEEEcCCC
Q 017664            1 MCVWLWGSTAAGLVEKKKVVVIGGGVGGSLLAYHIQS-FA-DVVLIDEKE   48 (368)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~vvIIGaG~aGl~aA~~L~~-g~-~v~lie~~~   48 (368)
                      |.|++|.......-+..+|+|||+|-.|..+|..|.+ |. +++|+|...
T Consensus       311 m~wRllp~~g~ekL~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~  360 (615)
T 4gsl_A          311 MKWRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT  360 (615)
T ss_dssp             HHHHTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             HHHhhcchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence            4455665444333456799999999999999999985 64 899999764

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=89.69  E-value=0.34  Score=41.60  Aligned_cols=33  Identities=15%  Similarity=0.339  Sum_probs=29.7

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      .++++|||+|-+|-+++..|. .|.+|+|+.|+.
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~  151 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSS  151 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            578999999999999999987 489999999875

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=89.64  E-value=0.29  Score=44.87  Aligned_cols=31  Identities=26%  Similarity=0.340  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHhhcCCcEEEEcCCC
Q 017664           18 KVVVIGGGVGGSLLAYHIQSFADVVLIDEKE   48 (368)
Q Consensus        18 ~vvIIGaG~aGl~aA~~L~~g~~v~lie~~~   48 (368)
                      +|.|||+|..|+..|..|.+|++|+++|+++
T Consensus         2 kI~VIG~G~vG~~~A~~La~G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSLQNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhCCCEEEEEECCH
Confidence            6999999999999999887799999999875

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=89.60  E-value=0.33  Score=43.15  Aligned_cols=35  Identities=26%  Similarity=0.237  Sum_probs=29.2

Q ss_pred             eEEEEcCchhHHHHHHHHhh-hCCCCeEEEEecCcc
Q 017664          141 SVLIVGGGPTGVELAGEIAV-DFPDKKVILVHRGPK  175 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~-~~~~~~v~~i~~~~~  175 (368)
                      +|+|||+|.+|+-+|..|.+ ...+.+|+++++++.
T Consensus         3 dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~   38 (342)
T 3qj4_A            3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADD   38 (342)
T ss_dssp             EEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCC
Confidence            69999999999999999984 115789999998753

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=89.59  E-value=0.57  Score=35.80  Aligned_cols=35  Identities=31%  Similarity=0.462  Sum_probs=29.0

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      .+++++|+|+|..|..++..|..  .+.+|+++.|.+
T Consensus        20 ~~~~v~iiG~G~iG~~~a~~l~~--~g~~v~v~~r~~   54 (144)
T 3oj0_A           20 GGNKILLVGNGMLASEIAPYFSY--PQYKVTVAGRNI   54 (144)
T ss_dssp             CCCEEEEECCSHHHHHHGGGCCT--TTCEEEEEESCH
T ss_pred             cCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEcCCH
Confidence            38999999999999999988874  466788888764

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=89.56  E-value=0.46  Score=41.73  Aligned_cols=35  Identities=23%  Similarity=0.224  Sum_probs=30.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      .+..+|.|||.|.-|...|..|. .|++|+++++++
T Consensus         7 ~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~   42 (306)
T 3l6d_A            7 SFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP   42 (306)
T ss_dssp             CCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            34568999999999999999987 599999999875

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=89.50  E-value=0.32  Score=42.61  Aligned_cols=33  Identities=18%  Similarity=-0.045  Sum_probs=29.7

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      +++|.|||.|.-|...|..|. .|++|+++|+++
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            468999999999999999987 599999999875

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=89.43  E-value=0.51  Score=41.23  Aligned_cols=33  Identities=27%  Similarity=0.445  Sum_probs=29.3

Q ss_pred             CCcEEEEC-CChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           16 KKKVVVIG-GGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        16 ~~~vvIIG-aG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      ..+|.||| +|.-|.+.|..|+ .|++|+++++++
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~   55 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   55 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence            35799999 9999999999997 499999999875

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=89.37  E-value=0.34  Score=42.56  Aligned_cols=31  Identities=39%  Similarity=0.569  Sum_probs=27.8

Q ss_pred             cEEEECCChHHHHHHHHhh-cCC--cEEEEcCCC
Q 017664           18 KVVVIGGGVGGSLLAYHIQ-SFA--DVVLIDEKE   48 (368)
Q Consensus        18 ~vvIIGaG~aGl~aA~~L~-~g~--~v~lie~~~   48 (368)
                      +|.|||+|..|.+.|..|. +|+  +|+++|.++
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            7999999999999999887 577  999999875

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=89.37  E-value=0.34  Score=44.66  Aligned_cols=35  Identities=23%  Similarity=0.456  Sum_probs=30.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK  175 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~  175 (368)
                      ..+|+|||+|++|+.+|..+++  .+.+|+++++.+.
T Consensus        27 ~~dViIIGgG~AGl~aA~~La~--~G~~V~llEk~~~   61 (417)
T 3v76_A           27 KQDVVIIGAGAAGMMCAIEAGK--RGRRVLVIDHARA   61 (417)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCC
Confidence            4589999999999999999986  4889999998764

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=89.27  E-value=0.38  Score=42.51  Aligned_cols=36  Identities=28%  Similarity=0.494  Sum_probs=29.7

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCC--cEEEEcCCC
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFA--DVVLIDEKE   48 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~--~v~lie~~~   48 (368)
                      |.++.+|.|||+|..|.+.|..|. .+.  ++.|+|.++
T Consensus         2 ~~~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~   40 (318)
T 1ez4_A            2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (318)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCc
Confidence            455679999999999999999886 344  899999753

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=89.23  E-value=0.37  Score=41.53  Aligned_cols=34  Identities=12%  Similarity=0.170  Sum_probs=29.5

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      +.++++|+|+|-.|.++|..|. .|.+|++++++.
T Consensus       118 ~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A          118 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence            3568999999999999999887 589999999874

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=89.20  E-value=0.31  Score=42.28  Aligned_cols=33  Identities=18%  Similarity=0.201  Sum_probs=29.4

Q ss_pred             CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      ++|.|||.|.-|...|..|. .|++|+++++++.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            47999999999999999987 5999999998753

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=89.20  E-value=0.34  Score=42.84  Aligned_cols=35  Identities=14%  Similarity=0.161  Sum_probs=30.6

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      +.++|.|||.|.-|...|..|. .|++|+++++++.
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   65 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPA   65 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHH
Confidence            4568999999999999999987 5999999998753

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=89.19  E-value=0.38  Score=42.95  Aligned_cols=34  Identities=18%  Similarity=0.239  Sum_probs=29.3

Q ss_pred             eEEEEcCchhHHHHHHHHhhhC----CCCeEEEEecCc
Q 017664          141 SVLIVGGGPTGVELAGEIAVDF----PDKKVILVHRGP  174 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~----~~~~v~~i~~~~  174 (368)
                      +|+|||+|.+|+-+|..|+++.    ++.+|+++++..
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            6899999999999999999753    348999999874

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=89.18  E-value=0.34  Score=43.55  Aligned_cols=35  Identities=17%  Similarity=0.366  Sum_probs=30.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL  176 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~  176 (368)
                      .++|+|||+|.+|+-+|..|+ +  +.+|+++++.+.+
T Consensus         9 ~~dv~IIGaGi~Gls~A~~La-~--G~~V~vlE~~~~~   43 (381)
T 3nyc_A            9 EADYLVIGAGIAGASTGYWLS-A--HGRVVVLEREAQP   43 (381)
T ss_dssp             ECSEEEECCSHHHHHHHHHHT-T--TSCEEEECSSSST
T ss_pred             cCCEEEECCcHHHHHHHHHHh-C--CCCEEEEECCCCc
Confidence            578999999999999999998 3  8899999987543

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=89.15  E-value=0.34  Score=43.14  Aligned_cols=34  Identities=21%  Similarity=0.413  Sum_probs=29.7

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      .+++|.|||+|.-|.+.|..|. .|++|+++++++
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~   47 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK   47 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            4578999999999999999986 599999999874

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=89.12  E-value=0.35  Score=45.16  Aligned_cols=35  Identities=26%  Similarity=0.450  Sum_probs=31.6

Q ss_pred             CCCcEEEECCChHHHHHHHHhhcCCcEEEEcCCCc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEY   49 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~g~~v~lie~~~~   49 (368)
                      ...+++|+|||-.|..+|..|.++++|.++|++..
T Consensus       234 ~~~~v~I~GgG~ig~~lA~~L~~~~~v~iIE~d~~  268 (461)
T 4g65_A          234 PYRRIMIVGGGNIGASLAKRLEQTYSVKLIERNLQ  268 (461)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHTTTSEEEEEESCHH
T ss_pred             cccEEEEEcchHHHHHHHHHhhhcCceEEEecCHH
Confidence            35689999999999999999998899999999863

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=89.10  E-value=0.41  Score=42.43  Aligned_cols=33  Identities=33%  Similarity=0.497  Sum_probs=28.5

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCC--cEEEEcCCC
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFA--DVVLIDEKE   48 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~--~v~lie~~~   48 (368)
                      ..+|.|||+|..|.+.|..|. .+.  +++++|.++
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~   40 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNK   40 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecch
Confidence            568999999999999999887 465  899999864

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=89.06  E-value=0.37  Score=44.31  Aligned_cols=34  Identities=35%  Similarity=0.707  Sum_probs=29.7

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL  176 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~  176 (368)
                      +|+|||+|.+|+-+|..|.+  .+.+|+++++++++
T Consensus         3 dVvVIGaG~aGl~aA~~L~~--~G~~V~vlE~~~~~   36 (431)
T 3k7m_X            3 DAIVVGGGFSGLKAARDLTN--AGKKVLLLEGGERL   36 (431)
T ss_dssp             EEEEECCBHHHHHHHHHHHH--TTCCEEEECSSSSS
T ss_pred             CEEEECCcHHHHHHHHHHHH--cCCeEEEEecCCCc
Confidence            68999999999999999996  38899999986543

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=89.05  E-value=0.49  Score=44.26  Aligned_cols=35  Identities=23%  Similarity=0.190  Sum_probs=30.5

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      ...+|.|||+|.-|...|..|. .|++|+++|+++.
T Consensus        36 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~   71 (463)
T 1zcj_A           36 PVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPK   71 (463)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            3567999999999999999887 5999999998763

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=89.00  E-value=0.41  Score=43.96  Aligned_cols=36  Identities=17%  Similarity=0.405  Sum_probs=31.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCC-CeEEEEecCccc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPD-KKVILVHRGPKL  176 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~-~~v~~i~~~~~~  176 (368)
                      ..+|+|||+|.+|+-+|..|.++  + .+|+++++++++
T Consensus         6 ~~~v~IIGaG~aGl~aA~~L~~~--g~~~v~v~E~~~~~   42 (424)
T 2b9w_A            6 DSRIAIIGAGPAGLAAGMYLEQA--GFHDYTILERTDHV   42 (424)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHT--TCCCEEEECSSSCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhC--CCCcEEEEECCCCC
Confidence            56899999999999999999863  6 799999987654

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=88.99  E-value=0.41  Score=42.33  Aligned_cols=34  Identities=35%  Similarity=0.555  Sum_probs=28.5

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cC--CcEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SF--ADVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g--~~v~lie~~~   48 (368)
                      ++.+|+|||+|..|.+.|..|. ++  .++.++|.++
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~   41 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDT   41 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            4568999999999999999886 45  4899999764

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=88.96  E-value=0.53  Score=42.67  Aligned_cols=35  Identities=31%  Similarity=0.381  Sum_probs=31.0

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEY   49 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~   49 (368)
                      ..++|.|||+|.-|...+..+++ |++|.++|+.+.
T Consensus        11 ~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~   46 (377)
T 3orq_A           11 FGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED   46 (377)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            45789999999999999999985 999999998764

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=88.91  E-value=0.47  Score=44.29  Aligned_cols=35  Identities=37%  Similarity=0.603  Sum_probs=30.2

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      .+|+|||+|.+|+-+|..|.++.++.+|+++++++
T Consensus         5 ~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~   39 (475)
T 3lov_A            5 KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGE   39 (475)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSS
T ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            58999999999999999999764448999999864

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=88.80  E-value=0.42  Score=42.63  Aligned_cols=33  Identities=18%  Similarity=0.453  Sum_probs=29.7

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      .+|+|||+|.+|+-+|..|++  .+.+|+++++.+
T Consensus         5 ~dvvIIG~G~~Gl~~A~~La~--~G~~V~vlE~~~   37 (369)
T 3dme_A            5 IDCIVIGAGVVGLAIARALAA--GGHEVLVAEAAE   37 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCC
Confidence            479999999999999999996  488999999875

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=88.78  E-value=0.43  Score=43.37  Aligned_cols=34  Identities=32%  Similarity=0.606  Sum_probs=29.7

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK  175 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~  175 (368)
                      ..|+|||+|.+|+-+|..|++  .+.+|+++++.+.
T Consensus         5 ~DVvIIGaG~~Gl~~A~~La~--~G~~V~vlE~~~~   38 (397)
T 2oln_A            5 YDVVVVGGGPVGLATAWQVAE--RGHRVLVLERHTF   38 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCT
T ss_pred             CCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCC
Confidence            379999999999999999996  4889999998753

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=88.77  E-value=0.4  Score=42.02  Aligned_cols=33  Identities=33%  Similarity=0.434  Sum_probs=28.0

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCC--cEEEEcCCC
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFA--DVVLIDEKE   48 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~--~v~lie~~~   48 (368)
                      +.+|.|||||..|...|..|. ++.  ++.|+|.++
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~   49 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSE   49 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence            468999999999999998776 577  999999876

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=88.74  E-value=0.37  Score=41.78  Aligned_cols=33  Identities=24%  Similarity=0.284  Sum_probs=29.4

Q ss_pred             CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      ++|.|||.|.-|...|..|. .|++|+++++++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            47999999999999999987 5999999998753

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=88.69  E-value=0.6  Score=45.42  Aligned_cols=45  Identities=33%  Similarity=0.518  Sum_probs=39.4

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccc
Q 017664           12 GLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWAS   56 (368)
Q Consensus        12 ~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~   56 (368)
                      .|++++|++|||+|..|...|..|. .|.+|++||+++++|+.|..
T Consensus         4 ~~~~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~~   49 (650)
T 1vg0_A            4 NLPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWAS   49 (650)
T ss_dssp             CCCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred             cCCCcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCcccc
Confidence            3556899999999999999999987 59999999999999977643

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=88.68  E-value=0.45  Score=41.63  Aligned_cols=34  Identities=21%  Similarity=0.430  Sum_probs=29.5

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFA-DVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~-~v~lie~~~   48 (368)
                      ..++++|||+|.+|.++|..|. .|. +|+|++|..
T Consensus       140 ~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          140 DGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            4568999999999999999987 487 999999874

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=88.65  E-value=0.4  Score=44.50  Aligned_cols=34  Identities=21%  Similarity=0.265  Sum_probs=30.7

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      ..++.|||.|.-|+..|..|. .|++|+++|+++.
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            468999999999999999987 5999999999874

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=88.49  E-value=0.54  Score=42.58  Aligned_cols=62  Identities=15%  Similarity=0.196  Sum_probs=45.5

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC-cccccc--------------------------cCchhHHHHHH
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRG-PKLLEF--------------------------VGSRASQIALD  190 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~-~~~l~~--------------------------~~~~~~~~~~~  190 (368)
                      ...+|+|||+|.+|+-+|..|.+  .+.+|++++++ +++...                          .-+.....+.+
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~--~G~~V~VlE~~~~~vGGr~~t~~~~~~~~~~~~~~~~~~e~G~~~~~~~~~~~~~  120 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTR--AGHDVTILEANANRVGGRIKTFHAKKGEPSPFADPAQYAEAGAMRLPSFHPLTLA  120 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHH--TSCEEEEECSCSSCCBTTCCEECCCTTSCCSSSSTTCCEESSCCCEETTCHHHHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHH--CCCcEEEEeccccccCCceeeecccccccccccCCCcEEecCceeecchHHHHHH
Confidence            35789999999999999999986  37899999988 543210                          00223456778


Q ss_pred             HHHcCCcEEEe
Q 017664          191 WLTSKKVEVIL  201 (368)
Q Consensus       191 ~l~~~gv~i~~  201 (368)
                      .+++.|++.+.
T Consensus       121 ~~~~lGl~~~~  131 (376)
T 2e1m_A          121 LIDKLGLKRRL  131 (376)
T ss_dssp             HHHHTTCCEEE
T ss_pred             HHHHcCCCcce
Confidence            88899987654

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=88.47  E-value=0.39  Score=44.05  Aligned_cols=36  Identities=22%  Similarity=0.147  Sum_probs=31.5

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      +.....++|||.|+.|..+|..|+ .|.+|++.|+++
T Consensus       217 ~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp  253 (435)
T 3gvp_A          217 MFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP  253 (435)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             eecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            345679999999999999999998 599999999865

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=88.41  E-value=0.38  Score=44.89  Aligned_cols=35  Identities=26%  Similarity=0.219  Sum_probs=30.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      ...+.++|+|+|..|.++|..|+ .|.+|+++|+++
T Consensus       263 L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          263 IAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            35678999999999999999998 599999999864

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=88.37  E-value=0.45  Score=42.89  Aligned_cols=34  Identities=26%  Similarity=0.454  Sum_probs=29.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      ..+|+|||+|.+|+-+|..|++  .+.+|+++++..
T Consensus        17 ~~dvvIIGgG~~Gl~~A~~La~--~G~~V~llE~~~   50 (382)
T 1ryi_A           17 HYEAVVIGGGIIGSAIAYYLAK--ENKNTALFESGT   50 (382)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHh--CCCcEEEEeCCC
Confidence            3579999999999999999996  488999999864

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=88.36  E-value=0.47  Score=41.73  Aligned_cols=32  Identities=41%  Similarity=0.534  Sum_probs=27.8

Q ss_pred             CcEEEECCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SFA-DVVLIDEKE   48 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g~-~v~lie~~~   48 (368)
                      .+|.|||+|..|...|..|. .|+ +|+++|.++
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            58999999999999999886 465 899999765

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=88.35  E-value=0.52  Score=41.58  Aligned_cols=34  Identities=35%  Similarity=0.568  Sum_probs=28.5

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cC--CcEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SF--ADVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g--~~v~lie~~~   48 (368)
                      +..+|.|||+|..|.+.|..|. ++  .++.++|.++
T Consensus         5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~   41 (316)
T 1ldn_A            5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (316)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence            4568999999999999999886 34  3899999874

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=88.21  E-value=0.35  Score=44.83  Aligned_cols=32  Identities=19%  Similarity=0.255  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           18 KVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        18 ~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      +|.|||+|..|+..|..|. .|++|+++|+++.
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~   34 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSST   34 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            6999999999999999887 5999999998753

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=88.20  E-value=0.34  Score=45.31  Aligned_cols=52  Identities=13%  Similarity=0.092  Sum_probs=40.8

Q ss_pred             hhHHHHHHHHHcC--------CcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCC
Q 017664          183 RASQIALDWLTSK--------KVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGK  234 (368)
Q Consensus       183 ~~~~~~~~~l~~~--------gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~  234 (368)
                      .+.+.+.+.+.+.        |.+++++++|++|+.+++  .|.+.+|+++++|.||+|++.
T Consensus       207 ~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~  268 (472)
T 1b37_A          207 AVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASL  268 (472)
T ss_dssp             HHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCH
T ss_pred             HHHHHHHHhccccccccccccccEEEcCCEEEEEEEcCCcEEEEECCCCEEEcCEEEEecCH
Confidence            4455555555443        678999999999987665  678889989999999999874

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=88.20  E-value=0.45  Score=41.63  Aligned_cols=34  Identities=24%  Similarity=0.206  Sum_probs=30.2

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      ...++.|||+|..|..+|..|+ .|.+|+++++..
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4578999999999999999987 499999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	368
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	4e-11
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	3e-10
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	0.002
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	7e-09
d1d7ya2	121	c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu	1e-08
d1d7ya2	121	c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu	2e-05
d1m6ia2	137	c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF	2e-08
d1m6ia2	137	c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF	3e-04
d1xhca1	167	c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite	1e-07
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	2e-07
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	2e-07
d1xhca2	122	c.3.1.5 (A:104-225) NADH oxidase /nitrite reductas	4e-06
d1xhca2	122	c.3.1.5 (A:104-225) NADH oxidase /nitrite reductas	0.004
d1gesa2	116	c.3.1.5 (A:147-262) Glutathione reductase {Escheri	2e-05
d1aoga2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Trypa	3e-05
d1onfa2	117	c.3.1.5 (A:154-270) Glutathione reductase {Plasmod	4e-05
d1djqa3	233	c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehyd	4e-05
d1feca2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Crith	5e-05
d1feca2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Crith	5e-04
d1ps9a3	179	c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA redu	2e-04
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	2e-04
d1q1ra2	133	c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseud	5e-04
d1q1ra2	133	c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseud	0.003
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	6e-04
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	0.001
d1t2da1	150	c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria p	0.002
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	0.002
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	0.002

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 59.4 bits (142), Expect = 4e-11
 Identities = 33/185 (17%), Positives = 57/185 (30%), Gaps = 16/185 (8%)

Query: 138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL---------EFVGSRASQIA 188
           +   V++VGGG  G   A  I +  P  +V L+                       S   
Sbjct: 1   AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKH 60

Query: 189 LDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILK- 247
                      +++ S T       L++T+ G     D   +  G  +    + +   K 
Sbjct: 61  GYDGLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKI 120

Query: 248 -----DSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEI-KQGYLAQKHALVTAKNLKK 301
                 + D     +  +       K +  IGD +    + K GY A     V A  +  
Sbjct: 121 AQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIANPMPKSGYSANSQGKVAAAAVVV 180

Query: 302 LMMGR 306
           L+ G 
Sbjct: 181 LLKGE 185

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 57.0 bits (136), Expect = 3e-10
 Identities = 33/177 (18%), Positives = 61/177 (34%), Gaps = 19/177 (10%)

Query: 141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL---------EFVGSRASQIALDW 191
            V+++G G   V    E+        + +V    +                 A +I LD 
Sbjct: 5   PVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDC 64

Query: 192 LTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDS-L 250
             + +VE +L  +          +  S G T+      + TG A  +    + + + + L
Sbjct: 65  KRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGL 124

Query: 251 DGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYL--------AQKHALVTAKNL 299
                + VD   R     +V+A+GD+T       G          AQ   +  A++L
Sbjct: 125 ACDDGIFVDAYGR-TTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHL 180

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 19/165 (11%), Positives = 41/165 (24%), Gaps = 24/165 (14%)

Query: 16  KKKVVVIGGGVGGSLLAYHIQSFA---DVVLIDEKEYFEITWASLRAVVEPSFAVRSVIN 72
           K  VVV+G G+        ++       + ++ ++         L            +  
Sbjct: 3   KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRL 62

Query: 73  HGDYLSNVKIVVSTAVSITDTE---VVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQY 129
                  V+ ++       D +   V  + G+T  Y  +V+ATG       +        
Sbjct: 63  DCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAA 122

Query: 130 EKDFEKV------------------KSANSVLIVGGGPTGVELAG 156
               +                            + G    +E   
Sbjct: 123 GLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWS 167

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 7e-09
 Identities = 38/210 (18%), Positives = 66/210 (31%), Gaps = 49/210 (23%)

Query: 142 VLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL------------------------- 176
            L++GGG      A  I    P  +V++V   P+L                         
Sbjct: 7   FLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRF 66

Query: 177 -----------LEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDT 225
                       +      S   L  + +  V V+  + V    + D +++ + G  I  
Sbjct: 67  KQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITY 126

Query: 226 DCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQG 285
           +   + TG    +  L +T   +     G   V+  L+ R   N++  GD     +IK G
Sbjct: 127 EKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNAELQAR--SNIWVAGDAACFYDIKLG 184

Query: 286 YL-------AQKHALVTAKNLKKLMMGRNK 308
                    A     +  +N    M G  K
Sbjct: 185 RRRVEHHDHAVVSGRLAGEN----MTGAAK 210

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 50.5 bits (120), Expect = 1e-08
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 5/101 (4%)

Query: 134 EKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE-FVGSRASQIALDWL 192
             ++  + +LIVGGG  G+ELA           V LV   P+L+     +  +     + 
Sbjct: 25  AGLRPQSRLLIVGGGVIGLELAATA--RTAGVHVSLVETQPRLMSRAAPATLADFVARYH 82

Query: 193 TSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTG 233
            ++ V++   +SVT     DG++    G  I  D   +  G
Sbjct: 83  AAQGVDLRFERSVT--GSVDGVVLLDDGTRIAADMVVVGIG 121

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 41.6 bits (97), Expect = 2e-05
 Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 8/104 (7%)

Query: 11  AGLVEKKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYFEITWASLRAVVEPSFAVRSV 70
           AGL  + +++++GGGV G  LA   ++    V +   E      +         F  R  
Sbjct: 25  AGLRPQSRLLIVGGGVIGLELAATARTAGVHVSL--VETQPRLMSRAAPATLADFVARYH 82

Query: 71  INHGDYLSNVKIVVSTAV-SITDTEVVTAGGQTFVYDYVVVATG 113
              G     V +    +V    D  V+   G     D VVV  G
Sbjct: 83  AAQG-----VDLRFERSVTGSVDGVVLLDDGTRIAADMVVVGIG 121

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (119), Expect = 2e-08
 Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 5/113 (4%)

Query: 126 LSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDK--KVILVHRGPKLL-EFVGS 182
           +  +    +  +   S+ I+GGG  G ELA  +         +VI +      + + +  
Sbjct: 24  IGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPE 83

Query: 183 RASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTG 233
             S   ++ +  + V+V+ N  V    +S G  LI+   G  ++TD      G
Sbjct: 84  YLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVG 136

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 3e-04
 Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 14/109 (12%)

Query: 13  LVEKKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYFEITWASLRAVVEPSFA---VRS 69
             E K + +IGGG  GS LA  +               E+                 + +
Sbjct: 34  SREVKSITIIGGGFLGSELACALGRK------ARALGTEVIQLFPEKGNMGKILPEYLSN 87

Query: 70  VINHGDYLSNVKIVVSTAV-SITDTE----VVTAGGQTFVYDYVVVATG 113
                     VK++ +  V S+  +     +    G+    D++V A G
Sbjct: 88  WTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVG 136

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 49.0 bits (115), Expect = 1e-07
 Identities = 34/168 (20%), Positives = 61/168 (36%), Gaps = 10/168 (5%)

Query: 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEV 199
           + V+IVG GP G ELA +++  +   +V ++ + P         +  IA     ++    
Sbjct: 1   SKVVIVGNGPGGFELAKQLSQTY---EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPY 57

Query: 200 ILN-----QSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRG 254
            L+                LI+      I            +A+      + + S    G
Sbjct: 58  SLDWYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDLARRSGIHTG 117

Query: 255 RLMVDENLRVRGFKNVFAIGDITDIPE--IKQGYLAQKHALVTAKNLK 300
           R ++ ++      K+V+AIGD  +           A + A V A  LK
Sbjct: 118 RGILIDDNFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILK 165

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 49.1 bits (115), Expect = 2e-07
 Identities = 28/190 (14%), Positives = 57/190 (30%), Gaps = 30/190 (15%)

Query: 142 VLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL-------------EFVGSRASQIA 188
           V+++G    G E   E+    PD ++    +G  +                  +    + 
Sbjct: 3   VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMT 62

Query: 189 LDWLTSKKVEVILNQSVTL-----NTISDGLIETSSGETIDTDCHFMCTGKAMAS----S 239
            + + S+ V V  N  +T      + ++   + +      + D   +  G          
Sbjct: 63  GEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVR 122

Query: 240 WLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYL--------AQKH 291
                +          L+  +        +VFA+GD T I                A+K 
Sbjct: 123 PNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQ 182

Query: 292 ALVTAKNLKK 301
                KNL++
Sbjct: 183 GRFAVKNLEE 192

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 48.6 bits (114), Expect = 2e-07
 Identities = 26/191 (13%), Positives = 56/191 (29%), Gaps = 29/191 (15%)

Query: 138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKV 197
           + ++V+IVG G  GVE+A  +     +  + LV     +   +       A     +   
Sbjct: 2   ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPL--SKAYLAGKATAE 59

Query: 198 EVILNQSVTLNTISDGLIETSSGETIDTDCH------------FMCTGKAMASSWLRETI 245
            + L         +  L+  +    I+ D                          +    
Sbjct: 60  SLYLRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCE 119

Query: 246 LKDS--LDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYL--------AQKHALVT 295
           L  +  L     ++++E+++      + A+GD                    A + A   
Sbjct: 120 LASAAGLQVDNGIVINEHMQT-SDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKI 178

Query: 296 AKNLKKLMMGR 306
           A      + G+
Sbjct: 179 AAI----LCGK 185

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 43.5 bits (102), Expect = 4e-06
 Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 8/119 (6%)

Query: 115 VESVPKSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP 174
            E +   RT  +   ++  E ++++   +I+GGG  G+ELAG +        V L+HRG 
Sbjct: 10  KEYLLTLRT--IFDADRIKESIENSGEAIIIGGGFIGLELAGNL--AEAGYHVKLIHRGA 65

Query: 175 KLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTG 233
             L       S +  D L    V+  LN  +      +G+   ++   I+        G
Sbjct: 66  MFLGL-DEELSNMIKDMLEETGVKFFLNSELL-EANEEGV--LTNSGFIEGKVKICAIG 120

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 35.1 bits (80), Expect = 0.004
 Identities = 17/103 (16%), Positives = 30/103 (29%), Gaps = 13/103 (12%)

Query: 13  LVEKKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVIN 72
           +    + ++IGGG  G  LA ++      V               R  +           
Sbjct: 29  IENSGEAIIIGGGFIGLELAGNLAEAGYHV-----------KLIHRGAMFLGLDEELSNM 77

Query: 73  HGDYLS--NVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATG 113
             D L    VK  +++ +   + E V            + A G
Sbjct: 78  IKDMLEETGVKFFLNSELLEANEEGVLTNSGFIEGKVKICAIG 120

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 40.9 bits (95), Expect = 2e-05
 Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 5/104 (4%)

Query: 133 FEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWL 192
           F        V +VG G  GVE      ++    K  L       L       S+  ++ +
Sbjct: 15  FALPALPERVAVVGAGYIGVE--LGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVM 72

Query: 193 TSKKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTG 233
            ++  ++  N        +      +E   G +   DC     G
Sbjct: 73  NAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG 116

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 40.9 bits (95), Expect = 3e-05
 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 4/99 (4%)

Query: 133 FEKVKSANSVLIVGGGPTGVELAGEIAVD-FPDKKVILVHRGPKLLEFVGSRASQIALDW 191
           F   +    VL VGGG   VE AG        D +V L +RG  +L        +     
Sbjct: 14  FYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQ 73

Query: 192 LTSKKVEVILNQSVT-LNTISDG--LIETSSGETIDTDC 227
           LT+  ++++  ++   +   +DG   +   SG+ +D D 
Sbjct: 74  LTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDL 112

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 40.5 bits (94), Expect = 4e-05
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 5/97 (5%)

Query: 132 DFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDW 191
           +F  +K +  + IVG G   VEL   I     D  +    RG ++L         +  + 
Sbjct: 15  EFFNIKESKKIGIVGSGYIAVELINVIKRLGIDSYIF--ARGNRILRKFDESVINVLEND 72

Query: 192 LTSKKVEVILNQSVT-LNTISDG--LIETSSGETIDT 225
           +    + ++    V  +  +SD    I  S G   + 
Sbjct: 73  MKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEH 109

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 233

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 42.1 bits (97), Expect = 4e-05
 Identities = 26/173 (15%), Positives = 58/173 (33%), Gaps = 14/173 (8%)

Query: 16  KKKVVVIGGGVGGSLLAY----HIQSFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVI 71
           K  V+++G G  GS  A        +       ++        A+L  + E S+      
Sbjct: 49  KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRE 108

Query: 72  NHGDYLSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTE------R 125
                L  +K    + +++    +       +  D V++ATG  E    +  +       
Sbjct: 109 TQITKL--LKKNKESQLALGQKPMTADDVLQYGADKVIIATGASECTLWNELKARESEWA 166

Query: 126 LSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE 178
            +  +  +    +    LI     TG  +A EI     + ++ + ++   +  
Sbjct: 167 ENDIKGIYLIGDAEAPRLIADATFTGHRVAREIEEA--NPQIAIPYKRETIAW 217

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 40.2 bits (93), Expect = 5e-05
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 4/105 (3%)

Query: 133 FEKVKSANSVLIVGGGPTGVELAGEIAVD-FPDKKVILVHRGPKLLEFVGSRASQIALDW 191
           F   ++    L VGGG   +E AG          +V L +RG  +L    S   +   + 
Sbjct: 12  FYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQ 71

Query: 192 LTSKKVEVILNQSVT-LNTISDG--LIETSSGETIDTDCHFMCTG 233
           L +  + V  +++   +   +DG   +   SG   D D   +  G
Sbjct: 72  LRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIG 116

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 37.1 bits (85), Expect = 5e-04
 Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 1/98 (1%)

Query: 17  KKVVVIGGGVGGSLLA-YHIQSFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGD 75
           K+ + +GGG      A       A    +D     ++      + +      +   N  +
Sbjct: 19  KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGIN 78

Query: 76  YLSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATG 113
             ++      T  +     VV   G    YD V++A G
Sbjct: 79  VRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIG 116

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 21/148 (14%), Positives = 46/148 (31%), Gaps = 24/148 (16%)

Query: 16  KKKVVVIGGGVGGSLLAYHI---QSFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVIN 72
           KK + V+G G  G   A +         +     +   +   A      E  +       
Sbjct: 43  KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYR 102

Query: 73  HGDYLSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQYEKD 132
               ++ V + ++  V+    +          +D  ++A+G            +      
Sbjct: 103 RMIEVTGVTLKLNHTVTADQLQ---------AFDETILASG------------IPNRALA 141

Query: 133 FEKVKSANSVLIVGGGPTGVELAGEIAV 160
              + S  +V ++GG    +EL    A+
Sbjct: 142 QPLIDSGKTVHLIGGCDVAMELDARRAI 169

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 226 DCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQG 285
           +C      +A     +       ++  RG + VD+ +R     +++AIGDI   P +   
Sbjct: 151 NCIIAAGSRAPNGKLISAEKAGVAVTDRGFIEVDKQMRT-NVPHIYAIGDIVGQPMLA-- 207

Query: 286 YLAQKHALVTAKNL 299
           + A     V A+N 
Sbjct: 208 HKAVHEGHVAAENC 221

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 133

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 37.6 bits (86), Expect = 5e-04
 Identities = 20/128 (15%), Positives = 37/128 (28%), Gaps = 8/128 (6%)

Query: 111 ATGHVESVPKSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILV 170
           A G   +    RT  L   E    ++ + N ++++GGG  G+E+A           ++  
Sbjct: 9   AVGKANNFRYLRT--LEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDT 66

Query: 171 HRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG-----LIETSSGETIDT 225
                         S           V++     V    +S        +    G  +  
Sbjct: 67  AARVLE-RVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPA 125

Query: 226 DCHFMCTG 233
           D      G
Sbjct: 126 DLVIAGIG 133

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 133

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 5/104 (4%)

Query: 13  LVEKKKVVVIGGGVGGSLLAYHIQSFAD---VVLIDEKEYFEITWASLRAVVEPSFAVRS 69
           L+   ++VVIGGG  G  +A           ++    +    +T   + A  E       
Sbjct: 32  LIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAG 91

Query: 70  VINHGDYLSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATG 113
           V         V     +      T V+   G     D V+   G
Sbjct: 92  VDIRTGT--QVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG 133

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 39.0 bits (89), Expect = 6e-04
 Identities = 9/44 (20%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 18 KVVVIGGGVGGSLLAYHIQS--FADVVLIDEKEYFEITWASLRA 59
          ++V+IG G+ G+ LA  + +  + ++ ++D+        ++  A
Sbjct: 3  RIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPGGSTSHA 46

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 37.9 bits (87), Expect = 0.001
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 250 LDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNL 299
           +  RG + VD+  R     N+FAIGDI   P +   + A     V A+ +
Sbjct: 167 MTNRGLIEVDQQCRT-SVPNIFAIGDIVPGPALA--HKASYEGKVAAEAI 213

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 150

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 16 KKKVVVIGGGVGGSLLAYHI--QSFADVVLIDEKEYFEITWA---SLRAVVEPSFAVRSV 70
          K K+V++G G+ G ++A  I  ++  DVVL D  +      A   S   V+  S    S 
Sbjct: 3  KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 62

Query: 71 INHGDYLSNVKIVVSTAVSI 90
           N  D L+   +V+ TA   
Sbjct: 63 SNTYDDLAGADVVIVTAGFT 82

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE 48
           +K+VVV+G GV G   A  +      V ++    
Sbjct: 5  SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 30/170 (17%), Positives = 45/170 (26%), Gaps = 26/170 (15%)

Query: 142 VLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQ---------IALDWL 192
           + IVG GP     A   A    + K +L           G + +               L
Sbjct: 8   LCIVGSGPAAHTAAIYAARA--ELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGIL 65

Query: 193 TSKKVEVILNQSVTLNT------------ISDGLIETSSGETIDTDCHFMCTGKAMASSW 240
             +  +    QS    T             S      +  + I  D   +  G       
Sbjct: 66  GVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKGHE 125

Query: 241 LRETILKD--SLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLA 288
                L     LD  G ++            VFA GD+ D  + +Q   A
Sbjct: 126 PATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQD-KKYRQAITA 174

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	368
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.87
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.86
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.86
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.85
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.84
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.83
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.83
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.83
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.83
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	99.82
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.82
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	99.82
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.81
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.79
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.78
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	99.75
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.75
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.74
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.73
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.71
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.69
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.69
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.68
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.68
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.68
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.67
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.66
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.65
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	99.65
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.65
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.65
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.63
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.63
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.61
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.61
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.61
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.6
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.6
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.59
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.59
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.58
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.53
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.52
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.51
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.5
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.43
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.4
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.36
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.35
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.35
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.28
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.27
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.26
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.25
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.24
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	99.23
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.21
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.17
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	99.17
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.11
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	99.09
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.07
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.03
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.03
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.03
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.03
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.03
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.03
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.03
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	99.01
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.0
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	98.92
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.89
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.87
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.86
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.84
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.82
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.81
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.8
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.76
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.75
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.74
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.73
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.71
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.71
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.69
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	98.68
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.67
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.65
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.61
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.59
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.58
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.57
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.56
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.54
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.53
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.49
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.48
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.45
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.44
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.44
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.44
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.43
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.41
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.39
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.35
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.33
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.32
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.3
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.24
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.23
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.21
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.21
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.17
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.14
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.08
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.07
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.05
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.02
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	97.99
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	97.96
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	97.9
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	97.82
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.78
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	97.74
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.73
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	97.73
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	97.69
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	97.68
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.67
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	97.62
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	97.58
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	97.57
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	97.56
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	97.52
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.5
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.49
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	97.42
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	97.34
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.32
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	97.28
d1fcda2	141	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.15
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.12
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.03
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	97.02
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.74
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	96.64
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	96.61
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	96.56
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.48
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	96.45
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.33
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	96.27
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.25
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.23
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.13
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.1
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.06
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.04
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.02
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.01
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	95.95
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.87
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	95.79
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	95.75
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.73
d1xdia2	118	Dihydrolipoamide dehydrogenase {Mycobacterium tube	95.69
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	95.67
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.58
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	95.53
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	95.38
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	95.37
d1v59a3	123	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.28
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	95.24
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	95.23
d1lvla3	123	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.18
d1ojta3	128	Dihydrolipoamide dehydrogenase {Neisseria meningit	95.14
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	95.13
d1ebda3	115	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.13
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	95.02
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	95.02
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.0
d3grsa3	115	Glutathione reductase {Human (Homo sapiens) [TaxId	94.93
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	94.84
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	94.82
d3lada3	124	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.69
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	94.66
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	94.45
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	94.39
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	94.37
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	94.3
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	94.13
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	94.04
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	94.04
d1mo9a3	140	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.02
d1dxla3	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	94.02
d1nhpa3	126	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.01
d1gesa3	115	Glutathione reductase {Escherichia coli [TaxId: 56	93.89
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	93.84
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	93.78
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	93.77
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	93.75
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	93.74
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	93.52
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	93.46
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	93.45
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	93.39
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	93.38
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	93.26
d1onfa3	119	Glutathione reductase {Plasmodium falciparum [TaxI	93.19
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	93.11
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	93.08
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	92.92
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	92.84
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	92.8
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	92.78
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	92.75
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	92.74
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	92.72
d1feca3	128	Trypanothione reductase {Crithidia fasciculata [Ta	92.72
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	92.65
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	92.64
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	92.58
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	92.56
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	92.53
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	92.4
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	92.29
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	92.21
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	92.19
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	92.16
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	92.15
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	92.13
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	91.99
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	91.94
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	91.89
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	91.84
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	91.84
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	91.81
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	91.73
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	91.38
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	91.11
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	91.07
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	91.06
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	91.01
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	90.98
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	90.97
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	90.74
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	90.65
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	90.64
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	90.58
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	90.45
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	90.32
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	90.27
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	90.07
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	90.03
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	89.84
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	89.84
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	89.82
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	89.74
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	89.73
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	89.54
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	89.3
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	89.3
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	89.22
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	89.15
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	89.14
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	89.01
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	88.95
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	88.89
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	88.77
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	88.7
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	88.66
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	88.62
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	88.6
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	88.49
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	88.47
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	88.38
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	88.28
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	88.17
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	88.03
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	87.9
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	87.74
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	87.48
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	87.3
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	87.28
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	87.09
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	87.04
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	86.98
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	86.83
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	86.8
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	86.77
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	86.74
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	86.65
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	86.62
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	86.34
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	86.12
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	85.98
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	85.84
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	85.79
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	85.76
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	85.66
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	85.46
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	85.43
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	85.13
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	85.1
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	84.73
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	84.64
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	84.63
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	84.57
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	83.89
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	83.59
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	83.56
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	83.56
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	83.34
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	83.32
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	83.23
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	83.19
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	83.19
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	83.03
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	82.95
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	82.84
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	82.11
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	82.0
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	81.92
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	81.52
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	81.49
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	81.15
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	81.04
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	80.92

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.87  E-value=3.3e-22  Score=169.44  Aligned_cols=110  Identities=18%  Similarity=0.183  Sum_probs=82.1

Q ss_pred             HHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccC-----CCCCchhhhccccccccCCCCcEEeC
Q 017664          187 IALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTG-----KAMASSWLRETILKDSLDGRGRLMVD  259 (368)
Q Consensus       187 ~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G-----~~p~~~~~~~~~l~~~~~~~g~i~vd  259 (368)
                      .+...++..+++++...... ......  .....+..++++|.+|+|||     +.|+++.+..+.+++++|++|+|.||
T Consensus        98 ~~~~~~~~~~v~~i~~~~~~-~~~~~~~~~~~~~~~~~~~a~~VIiATGs~~~gr~p~~~~l~l~~~gv~~~~~G~i~vd  176 (221)
T d1dxla1          98 GIEGLFKKNKVTYVKGYGKF-VSPSEISVDTIEGENTVVKGKHIIIATGSDVKGRTPFTSGLNLDKIGVETDKLGRILVN  176 (221)
T ss_dssp             HHHHHHHHHTCEEEESCEEE-EETTEEEECCSSSCCEEEECSEEEECCCEEECCEEECCTTSCCTTTTCCBCSSSCBCCC
T ss_pred             HHHHhhhcCCeEEEEecccc-ccccccccccccccccccccceEEEeECCCccCccccCCCCChHhcCceEcCCCcEEeC
Confidence            34455666788877554321 111111  12233446899999999999     45777776666667789999999999


Q ss_pred             CCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHH
Q 017664          260 ENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLK  300 (368)
Q Consensus       260 ~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~  300 (368)
                      +++|| +.|+|||+|||...|.  +.+.|..+|+.||++|+
T Consensus       177 ~~~~T-~v~gi~A~GDv~~g~~--l~~~A~~~g~~aa~~i~  214 (221)
T d1dxla1         177 ERFST-NVSGVYAIGDVIPGPM--LAHKAEEDGVACVEYLA  214 (221)
T ss_dssp             TTCBC-SSTTEEECSTTSSSCC--CHHHHHHHHHHHHHHHT
T ss_pred             CCccc-CCCCEEEEeccCCCcc--cHHHHHHHHHHHHHHHc
Confidence            99999 8999999999997654  78999999999999996

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.86  E-value=4.9e-22  Score=165.47  Aligned_cols=155  Identities=25%  Similarity=0.356  Sum_probs=120.3

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccC--------------chhHHHHHHHHHcCCcEEEecceee
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVG--------------SRASQIALDWLTSKKVEVILNQSVT  206 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~--------------~~~~~~~~~~l~~~gv~i~~~~~v~  206 (368)
                      ||+|||+|++|+|+|..|++..++.+|+++++++.+. ..+              +.+.....+.++++||++++++.|+
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V~   80 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS-FLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT   80 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS-BCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCccc-ccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeecee
Confidence            6999999999999999999877888999999876541 111              1222223567889999999999999


Q ss_pred             ecccCCCeEE---cCCCc--EEecCEEEEccCCCC--------CchhhhccccccccCCCCcEEeCCCeeecCCCCeEEe
Q 017664          207 LNTISDGLIE---TSSGE--TIDTDCHFMCTGKAM--------ASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAI  273 (368)
Q Consensus       207 ~i~~~~~~v~---~~~g~--~i~~d~vi~a~G~~p--------~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~  273 (368)
                      +++.+++.+.   +.+|+  ++++|.+|+++|..|        +..++.. .+  .++++|++.||+++|| +.|+|||+
T Consensus        81 ~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~~~-~~--~~~~~G~i~vd~~~~T-~~~~IyA~  156 (198)
T d1nhpa1          81 AIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVRPNTAWLKG-TL--ELHPNGLIKTDEYMRT-SEPDVFAV  156 (198)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCEEESCGGGTT-TS--CBCTTSCBCCCTTCBC-SSTTEEEC
T ss_pred             eEeeccccceeeecccccccccccceeeEeecceeecccccccccccccc-cc--eeccCCceecCCcccc-cccceEEe
Confidence            9988776443   34453  678999999998764        3344433 22  5678999999999999 89999999


Q ss_pred             cccCCCCcc--------chHHHHHHHHHHHHHHHH
Q 017664          274 GDITDIPEI--------KQGYLAQKHALVTAKNLK  300 (368)
Q Consensus       274 GD~~~~~~~--------~~~~~a~~~g~~aa~~i~  300 (368)
                      |||+..+..        ..+..|.+||+.||+||.
T Consensus       157 GD~a~~~~~~~~~~~~~~~a~~A~~~g~~aa~ni~  191 (198)
T d1nhpa1         157 GDATLIKYNPADTEVNIALATNARKQGRFAVKNLE  191 (198)
T ss_dssp             GGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSS
T ss_pred             cceeecccccCCCcccccHHHHHHHHHHHHHHhhC
Confidence            999975321        257789999999999985

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.86  E-value=9.7e-22  Score=161.55  Aligned_cols=158  Identities=19%  Similarity=0.205  Sum_probs=115.1

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccc-CchhHHHHH----------HHHHcCCcEEEecceeeec
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFV-GSRASQIAL----------DWLTSKKVEVILNQSVTLN  208 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~-~~~~~~~~~----------~~l~~~gv~i~~~~~v~~i  208 (368)
                      .+|+|||+|++|+|+|..|.+......++++.+.  .++.+ .+.+...+.          +.....++++++++.+.++
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i   81 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDE--AERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSF   81 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESS--CSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEE
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEecc--cccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEecccccc
Confidence            4699999999999999999875444445554433  32211 122222221          2334679999999999988


Q ss_pred             ccCCCeEEcCCCcEEecCEEEEccCCCCCchhhhcccc-ccccCCCCcEEeCCCeeecCCCCeEEecccCCCCcc-----
Q 017664          209 TISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETIL-KDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEI-----  282 (368)
Q Consensus       209 ~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l-~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~-----  282 (368)
                      ..+...+.+.+|+++++|.+|+|+|..|+..++..... ...++.++.|.||+++|| +.|+|||+|||+..+.+     
T Consensus        82 ~~~~~~~~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~~~~~I~vd~~~~t-s~~~IyA~GD~a~~~~~~~g~~  160 (183)
T d1d7ya1          82 DPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLACDDGIFVDAYGRT-TCPDVYALGDVTRQRNPLSGRF  160 (183)
T ss_dssp             ETTTTEEEETTSCEEECSEEEECCCEEECCEEECCHHHHHTTCCBSSSEECCTTCBC-SSTTEEECGGGEEEECTTTCSE
T ss_pred             ccccceeEecCCcEeeeeeEEEEEEEEcccccccccccceeeEeeCCcEEeccceec-cccccchhhhhhccceeeCCce
Confidence            87777899999999999999999999987644332211 001233567999999998 79999999999865422     


Q ss_pred             ---chHHHHHHHHHHHHHHHH
Q 017664          283 ---KQGYLAQKHALVTAKNLK  300 (368)
Q Consensus       283 ---~~~~~a~~~g~~aa~~i~  300 (368)
                         .++..|.+||+.+|+||+
T Consensus       161 ~~~~~~~~A~~qg~~aa~nil  181 (183)
T d1d7ya1         161 ERIETWSNAQNQGIAVARHLV  181 (183)
T ss_dssp             EECCCHHHHHHHHHHHHHHHH
T ss_pred             echhHHHHHHHHHHHHHHHHc
Confidence               357889999999999997

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.85  E-value=1.4e-21  Score=165.64  Aligned_cols=110  Identities=23%  Similarity=0.262  Sum_probs=84.0

Q ss_pred             HHHHHHHHcCCcEEEecceeeecccCCC-eE-EcCCCcEEecCEEEEcc--------CCCCCchhhhccccccccCCCCc
Q 017664          186 QIALDWLTSKKVEVILNQSVTLNTISDG-LI-ETSSGETIDTDCHFMCT--------GKAMASSWLRETILKDSLDGRGR  255 (368)
Q Consensus       186 ~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~v-~~~~g~~i~~d~vi~a~--------G~~p~~~~~~~~~l~~~~~~~g~  255 (368)
                      ..+...++..+|+++.+.-.  +..... .+ ...++.++.+|.+|+++        |++|+++.+..+.+++++|++|+
T Consensus        95 ~~~~~~~~~~~V~~i~G~a~--f~~~~~~~v~~~~~~~~~~~~~iiIa~g~~p~~~~G~~p~~~~l~l~~~gv~~~~~G~  172 (223)
T d1ebda1          95 GGVEGLLKGNKVEIVKGEAY--FVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELVGRRPNTDELGLEQIGIKMTNRGL  172 (223)
T ss_dssp             HHHHHHHHTTTCEEEESEEE--EEETTEEEEEETTEEEEEECSEEEECCCEEECCBSCEEESCSSSSTTTTTCCBCTTSC
T ss_pred             hhHHHhhhccceeeeccEEE--EccCcccceeccccceEEecccEEEEcCCCccccccceecCCCCChHhcCceECCCCC
Confidence            33455667788888776421  222222 23 33344688999999985        78888887666666678899999


Q ss_pred             EEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHH
Q 017664          256 LMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLK  300 (368)
Q Consensus       256 i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~  300 (368)
                      |.||+++|| +.|+|||+|||++.+.  +.+.|..||+.||++|+
T Consensus       173 I~vd~~~~T-~~~gvyA~GDv~~~~~--~~~~A~~~g~~aa~~i~  214 (223)
T d1ebda1         173 IEVDQQCRT-SVPNIFAIGDIVPGPA--LAHKASYEGKVAAEAIA  214 (223)
T ss_dssp             BCCCTTCBC-SSTTEEECGGGSSSCC--CHHHHHHHHHHHHHHHT
T ss_pred             EeECCCCCC-CCCCEEEEeccCCCcc--cHHHHHHHHHHHHHHHc
Confidence            999999999 8999999999998764  78999999999999997

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.4e-21  Score=162.82  Aligned_cols=157  Identities=19%  Similarity=0.316  Sum_probs=121.7

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCch------------------------------------
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSR------------------------------------  183 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~------------------------------------  183 (368)
                      .+++|||+|++|+++|..|+++.+..+|+++.+.+.+ |...+.                                    
T Consensus         5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~-py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (213)
T d1m6ia1           5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL-PYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSF   83 (213)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC-CBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGG
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC-CccccccceecccccCchhhhhhhhhhcccchhhhhcCChhh
Confidence            4689999999999999999987777889999875432 110000                                    


Q ss_pred             -hHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCCcEEecCEEEEccCCCCC-chhhhccccccccCCCCcEEeCCC
Q 017664          184 -ASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMA-SSWLRETILKDSLDGRGRLMVDEN  261 (368)
Q Consensus       184 -~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~-~~~~~~~~l~~~~~~~g~i~vd~~  261 (368)
                       ........+++.||+++++++|+.++.++..|.++||+++++|.+|+|+|..|+ .++....++.+ .+..|.+.||++
T Consensus        84 ~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~~d~lViAtG~~~~~~~l~~~~gl~~-~~~~~~i~vd~~  162 (213)
T d1m6ia1          84 YVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTEPNVELAKTGGLEI-DSDFGGFRVNAE  162 (213)
T ss_dssp             SBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEEECCTTHHHHTCCB-CTTTCSEECCTT
T ss_pred             hhhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccceeeccceEEEeeeeecchhhhhhccchhh-hhhhhhhhhhHh
Confidence             111122345788999999999999987777999999999999999999997644 45666666532 234588999999


Q ss_pred             eeecCCCCeEEecccCCCCc-------cchHHHHHHHHHHHHHHHH
Q 017664          262 LRVRGFKNVFAIGDITDIPE-------IKQGYLAQKHALVTAKNLK  300 (368)
Q Consensus       262 ~~~~~~~~ifa~GD~~~~~~-------~~~~~~a~~~g~~aa~~i~  300 (368)
                      ||+ + |+|||+|||+..+.       +..+..|+.||+.||+||+
T Consensus       163 l~~-~-~~VyA~GD~a~~~~~~~g~~~i~~~~~A~~~gr~aa~ni~  206 (213)
T d1m6ia1         163 LQA-R-SNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMT  206 (213)
T ss_dssp             CEE-E-TTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHT
T ss_pred             cCc-C-CceEEeeeeeeeccccCCcEEeeEhHHHHHHHHHHHHHhc
Confidence            998 4 99999999987543       2356789999999999998

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.83  E-value=6.5e-21  Score=165.56  Aligned_cols=50  Identities=30%  Similarity=0.500  Sum_probs=45.8

Q ss_pred             cccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHH
Q 017664          248 DSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLK  300 (368)
Q Consensus       248 ~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~  300 (368)
                      ++++++|+|.||+++|| +.|+|||+|||++.|.  +++.|..||+.||+||+
T Consensus       205 l~~~~~G~I~Vn~~~~T-s~~~IyA~GDv~~~~~--l~~~A~~~G~~aa~~i~  254 (261)
T d1mo9a1         205 LDLGPKGEVLVNEYLQT-SVPNVYAVGDLIGGPM--EMFKARKSGCYAARNVM  254 (261)
T ss_dssp             CCBCTTSCBCCCTTSBC-SSTTEEECGGGGCSSC--SHHHHHHHHHHHHHHHT
T ss_pred             eeeccCCEEEeCCCccc-CCCCEEEEEEeCCCcc--cHHHHHHHHHHHHHHHC
Confidence            36788999999999999 8999999999997654  78999999999999997

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.83  E-value=1.3e-20  Score=152.34  Aligned_cols=150  Identities=25%  Similarity=0.394  Sum_probs=114.9

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCch-------------hHHHHHHHHHcCCcEEEecceee
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSR-------------ASQIALDWLTSKKVEVILNQSVT  206 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~-------------~~~~~~~~l~~~gv~i~~~~~v~  206 (368)
                      .||+|||+|++|+|+|..|++   +.+|+++++.+... ..++.             +.....+.+++.++++++++.++
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~---~~~Vtvv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~   76 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ---TYEVTVIDKEPVPY-YSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAK   76 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT---TSEEEEECSSSSCC-CCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEE
T ss_pred             CeEEEECCcHHHHHHHHHHHc---CCCEEEEecccccc-ccccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeecccc
Confidence            379999999999999999863   56999999876421 11111             12223456778899999999998


Q ss_pred             ecccCCCeEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCc--cch
Q 017664          207 LNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPE--IKQ  284 (368)
Q Consensus       207 ~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~--~~~  284 (368)
                      .++... .+.+.+++++++|.+++|+|.+| .+++...++  ..+  +.+.||+++|+ +.|+|||+|||+..+.  +..
T Consensus        77 ~i~~~~-~~~~~~~~~i~~D~li~a~G~~~-~~~~~~~gl--~~~--~~i~v~~~~~t-~~~~i~aiGD~~~~~~~~~~~  149 (167)
T d1xhca1          77 LIDRGR-KVVITEKGEVPYDTLVLATGAPN-VDLARRSGI--HTG--RGILIDDNFRT-SAKDVYAIGDCAEYSGIIAGT  149 (167)
T ss_dssp             EEETTT-TEEEESSCEEECSEEEECCCEEC-CHHHHHTTC--CBS--SSEECCTTSBC-SSTTEEECGGGEEBTTBCCCS
T ss_pred             cccccc-ccccccccccccceeEEEEEecC-CchhhhcCc--eeC--CceeeccccEe-cCCCeEEeeecccCCCeEECh
Confidence            776443 45556667899999999999875 467766665  333  35999999999 7999999999986543  346


Q ss_pred             HHHHHHHHHHHHHHHH
Q 017664          285 GYLAQKHALVTAKNLK  300 (368)
Q Consensus       285 ~~~a~~~g~~aa~~i~  300 (368)
                      ++.|++||+.+|+||.
T Consensus       150 ~~~a~~~a~~~a~~i~  165 (167)
T d1xhca1         150 AKAAMEQARVLADILK  165 (167)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcC
Confidence            7899999999999986

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.83  E-value=1.8e-21  Score=165.54  Aligned_cols=111  Identities=19%  Similarity=0.222  Sum_probs=80.7

Q ss_pred             HHHHHHHHcCCcEEEecceeeecccCCCeEEcCCC--cEEecCEEEEccCCCCCch-------hhhccccccccCCCCcE
Q 017664          186 QIALDWLTSKKVEVILNQSVTLNTISDGLIETSSG--ETIDTDCHFMCTGKAMASS-------WLRETILKDSLDGRGRL  256 (368)
Q Consensus       186 ~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g--~~i~~d~vi~a~G~~p~~~-------~~~~~~l~~~~~~~g~i  256 (368)
                      ..+...++..||+++.+........ .......++  ..+.++.+++++|.+|...       -+..+.+++.+|++|+|
T Consensus       103 ~~~~~~~~~~gV~vi~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~atG~~~~~~~~~~~~~~~~~~~~gv~l~~~G~i  181 (229)
T d3lada1         103 GGVASLIKANGVTLFEGHGKLLAGK-KVEVTAADGSSQVLDTENVILASGSKPVEIPRRPVTTDLLAADSGVTLDERGFI  181 (229)
T ss_dssp             HHHHHHHHHHTCEEEESEEEECSTT-CEEEECTTSCEEEECCSCEEECCCEEECCCTEEECCTTCCSSCCSCCBCTTSCB
T ss_pred             hhHHHHhhcCCeEEEEeEEcccccc-eeeccccCccceeeecccccccCCcccccccccccccccchHhcCeeecCCCcE
Confidence            3445567778999987765442211 113333332  4688999999999876432       11122345578999999


Q ss_pred             EeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHH
Q 017664          257 MVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLK  300 (368)
Q Consensus       257 ~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~  300 (368)
                      .||+++|| +.|+|||+|||...+.  +.+.|.++|+.||++|+
T Consensus       182 ~vd~~~~T-~vpgiyA~GDv~~g~~--l~~~A~~~G~~aa~~i~  222 (229)
T d3lada1         182 YVDDYCAT-SVPGVYAIGDVVRGAM--LAHKASEEGVVVAERIA  222 (229)
T ss_dssp             CCCTTSBC-SSTTEEECGGGSSSCC--CHHHHHHHHHHHHHHHH
T ss_pred             EecccccC-CCCCEEEEeCCcchHH--HHHHHHHHHHHHHHHHc
Confidence            99999999 8999999999987654  78899999999999998

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.83  E-value=1.1e-19  Score=148.88  Aligned_cols=168  Identities=22%  Similarity=0.275  Sum_probs=124.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCch----------hHHHHHHHHHcCCcEEEecceeeec
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSR----------ASQIALDWLTSKKVEVILNQSVTLN  208 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~----------~~~~~~~~l~~~gv~i~~~~~v~~i  208 (368)
                      +|||+|||+|++|+|+|..|++..+..+|+++++.+.+.......          ........+.+.++.++.++.+ .+
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~   80 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSAT-GI   80 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCCEE-EC
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeeeeE-ee
Confidence            689999999999999999999877778999999988654321111          1111124556778888776544 33


Q ss_pred             ccCCCeEEcCCCcEEecCEEEEccCCCCCchhhhcccccc-----ccCCCCcEEeCC-CeeecCCCCeEEecccCCC-Cc
Q 017664          209 TISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKD-----SLDGRGRLMVDE-NLRVRGFKNVFAIGDITDI-PE  281 (368)
Q Consensus       209 ~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~-----~~~~~g~i~vd~-~~~~~~~~~ifa~GD~~~~-~~  281 (368)
                      ......+.+.+++++++|.+|+|+|.+|+.+++.......     ....++++.+++ .++.++.++||++||++.. +.
T Consensus        81 ~~~~~~~~~~~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iGd~~~~~~~  160 (186)
T d1fcda1          81 DPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIANPM  160 (186)
T ss_dssp             CTTTTEEEETTSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCTTSSEEBCSSSCBBSSSTTEEECTTSEECTTC
T ss_pred             eeccceeecccceeeccceEEEEeccccchhhhhhhhhhheeccCcccccccccceeeeeecccccCceEeccccccCCC
Confidence            4344478888999999999999999999877666543211     112345565655 5777789999999999854 44


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHcCCC
Q 017664          282 IKQGYLAQKHALVTAKNLKKLMMGRN  307 (368)
Q Consensus       282 ~~~~~~a~~~g~~aa~~i~~~l~g~~  307 (368)
                      ++.++.|.+||+++|+||.+.+.|++
T Consensus       161 p~~~~~A~~q~~~~A~ni~~~~~G~e  186 (186)
T d1fcda1         161 PKSGYSANSQGKVAAAAVVVLLKGEE  186 (186)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             CchHhHHHHHHHHHHHHHHHHhcCCC
Confidence            67899999999999999999998863

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=6e-21  Score=163.15  Aligned_cols=110  Identities=15%  Similarity=0.128  Sum_probs=80.4

Q ss_pred             HHHHHHHcCCcEEEecceeeecccCCC-eEEcCCCc--EEecCEEEEccCCCCCch--------hhhccccccccCC-CC
Q 017664          187 IALDWLTSKKVEVILNQSVTLNTISDG-LIETSSGE--TIDTDCHFMCTGKAMASS--------WLRETILKDSLDG-RG  254 (368)
Q Consensus       187 ~~~~~l~~~gv~i~~~~~v~~i~~~~~-~v~~~~g~--~i~~d~vi~a~G~~p~~~--------~~~~~~l~~~~~~-~g  254 (368)
                      .+...+++++|+++.+....  ...+. .+...+++  .+.++.+++++|.+|...        .+.....++.++. .|
T Consensus       106 g~~~~l~~~~V~vi~G~~~~--~~~~~~~v~~~~~~~~~i~a~~ivi~~G~~p~~~~i~~~~~~~~~l~~~gv~l~~~~g  183 (235)
T d1h6va1         106 GYRVALREKKVVYENAYGKF--IGPHKIMATNNKGKEKVYSAERFLIATGERPRYLGIRDSCTRTIGLETVGVKINEKTG  183 (235)
T ss_dssp             HHHHHHHHHTCEEECCEEEE--EETTEEEEECTTSCEEEEEEEEEEECCCEEECCCSSEEESCTTSCCTTTTCCCCSSSC
T ss_pred             hhhhhhhccCceEEEeEEee--ccccceecccccccccccccccceeecCCCceeEEEeeccceeeccccceeeeccccC
Confidence            34556777889988776432  11221 45555554  688999999999887532        2222334456665 59


Q ss_pred             cEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHH
Q 017664          255 RLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLK  300 (368)
Q Consensus       255 ~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~  300 (368)
                      +|.||+++|| |.|+|||+|||+..+ +.+++.|+.+|+.||++|+
T Consensus       184 ~I~vd~~~~T-svpgIyA~GDv~~g~-~~l~~~A~~eG~~aa~~~~  227 (235)
T d1h6va1         184 KIPVTDEEQT-NVPYIYAIGDILEGK-LELTPVAIQAGRLLAQRLY  227 (235)
T ss_dssp             CBCCCTTSBC-SSTTEEECGGGBTTS-CCCHHHHHHHHHHHHHHHH
T ss_pred             ccccCCcccc-CCCCEEEEEeccCCC-cccHHHHHHHHHHHHHHHc
Confidence            9999999999 899999999998653 4578899999999999997

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.82  E-value=2.6e-20  Score=158.94  Aligned_cols=111  Identities=18%  Similarity=0.132  Sum_probs=81.0

Q ss_pred             HHHHHHHcCCcEEEecceeeecccC--C-C--eEEcCCCc--EEecCEEEEccCCCCCch---------hhhcccccccc
Q 017664          187 IALDWLTSKKVEVILNQSVTLNTIS--D-G--LIETSSGE--TIDTDCHFMCTGKAMASS---------WLRETILKDSL  250 (368)
Q Consensus       187 ~~~~~l~~~gv~i~~~~~v~~i~~~--~-~--~v~~~~g~--~i~~d~vi~a~G~~p~~~---------~~~~~~l~~~~  250 (368)
                      .+...++..||+++.+.........  . .  .+...+|+  ++++|.+|+++|..|...         -+..+..++++
T Consensus        99 ~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAtG~~p~~~~~~~~~~~~~l~l~~~gv~~  178 (233)
T d1xdia1          99 DITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSGSVPNTSGLGLERVGIQL  178 (233)
T ss_dssp             HHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCGGCEEECCSSSCTTTTTCCC
T ss_pred             ceehhhcccceeEEECcccccccccccccceEEEEecCCceeeeecceeeeecCcccccccccccccccccccchhhhcc
Confidence            3455677788888876432211111  1 1  45556664  799999999999887532         11122234578


Q ss_pred             CCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHH
Q 017664          251 DGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLK  300 (368)
Q Consensus       251 ~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~  300 (368)
                      +++|+|.||++||| +.|+|||+|||++.+  .+++.|..+|+.||.||+
T Consensus       179 ~~~G~I~vd~~~~T-~~~gIyA~GDv~~~~--~l~~~A~~~g~~aa~~~~  225 (233)
T d1xdia1         179 GRGNYLTVDRVSRT-LATGIYAAGDCTGLL--PLASVAAMQGRIAMYHAL  225 (233)
T ss_dssp             BTTTBCCCCSSSBC-SSTTEEECSGGGTSC--SCHHHHHHHHHHHHHHHT
T ss_pred             cCCCcCCcCCCccc-CCCCEEEEEEeCCCc--hhHHHHHHHHHHHHHHHc
Confidence            88999999999999 899999999999765  478899999999999998

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.1e-20  Score=159.92  Aligned_cols=171  Identities=21%  Similarity=0.281  Sum_probs=116.7

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeee--c-----cceee-----------------eecccccccce
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEIT--W-----ASLRA-----------------VVEPSFAVRSV   70 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~--~-----~~~~~-----------------~~~~~~~~~~~   70 (368)
                      .||+|||||||||++||.++++ |.+|+|||++..-|.-  .     ..+..                 .....+.....
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVI   82 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCCCCCCCHHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccccccccchhhhhh
Confidence            5899999999999999999985 9999999987642200  0     00000                 00000000000


Q ss_pred             eec------------ccc--cCceeEEEeEEEEeeccE-EEecCCeEEEecEEEEecCCCCCCCCchHHHHHHHHHHHHH
Q 017664           71 INH------------GDY--LSNVKIVVSTAVSITDTE-VVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQYEKDFEK  135 (368)
Q Consensus        71 ~~~------------~~~--~~~~~~~~~~~~~~~~~~-v~~~~g~~~~~d~lvlAtG~~~~~p~~~~~~~~~~~~~~~~  135 (368)
                      ...            ...  ..+++++.+.......+. ........+..+.+++|+|+.|.+|.               
T Consensus        83 ~~~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~~~~~~~~~~~~~~~~~~~~~~~iatG~~p~vp~---------------  147 (221)
T d3grsa1          83 KEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPH---------------  147 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEECSCSSCEEEETTEEEECSCEEECCCEEECCCC---------------
T ss_pred             hhhhheEEeeeccchhhhhccCceEEEEEeeeeccccceeeeeeccccccceeEEecCccccCCC---------------
Confidence            000            000  125778877776666542 22334567889999999999998875               


Q ss_pred             HhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeE
Q 017664          136 VKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLI  215 (368)
Q Consensus       136 ~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v  215 (368)
                                                                                                      
T Consensus       148 --------------------------------------------------------------------------------  147 (221)
T d3grsa1         148 --------------------------------------------------------------------------------  147 (221)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHH
Q 017664          216 ETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVT  295 (368)
Q Consensus       216 ~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~a  295 (368)
                                       |+.|+++.+..+.+++.++++|+|.||+++|| +.|+|||+|||++.+.  +.+.|..+|+.|
T Consensus       148 -----------------~r~p~~~~l~L~~~gv~~~~~G~I~vd~~~~T-~~~gvyA~GDv~~~~~--l~~~A~~~G~~a  207 (221)
T d3grsa1         148 -----------------ERVPNTKDLSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVCGKAL--LTPVAIAAGRKL  207 (221)
T ss_dssp             -----------------TEEESCTTTTGGGTTCCBCTTSCBCCCTTCBC-SSTTEEECGGGGTSSC--CHHHHHHHHHHH
T ss_pred             -----------------ccccCCCCcCchhcCcEECCCccEEeCCCccc-cCCcEEEEEEccCCcC--cHHHHHHHHHHH
Confidence                             12344444444445568899999999999999 8999999999997643  788899999999


Q ss_pred             HHHHHH
Q 017664          296 AKNLKK  301 (368)
Q Consensus       296 a~~i~~  301 (368)
                      |++|..
T Consensus       208 a~~~~~  213 (221)
T d3grsa1         208 AHRLFE  213 (221)
T ss_dssp             HHHHHS
T ss_pred             HHHHcC
Confidence            999983

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.81  E-value=9.4e-20  Score=149.63  Aligned_cols=156  Identities=18%  Similarity=0.175  Sum_probs=115.7

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEE--ecCccccccc-------------CchhHHHHHHHHHcCCcEEEec
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILV--HRGPKLLEFV-------------GSRASQIALDWLTSKKVEVILN  202 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i--~~~~~~l~~~-------------~~~~~~~~~~~l~~~gv~i~~~  202 (368)
                      ..++|+|||+|++|+|+|..|.+.  +.+++++  .+.+......             ...............+..+..+
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~--g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRAS--GWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGG   79 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHT--TCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHc--CCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeecc
Confidence            367999999999999999999864  4455444  4433211110             1111122245567788889888


Q ss_pred             ceeeecccCCCeEEcCCCcEEecCEEEEccCCCCC---chhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCC
Q 017664          203 QSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMA---SSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDI  279 (368)
Q Consensus       203 ~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~---~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~  279 (368)
                      ..+..+..+...+.+.+++++++|.+++++|.+|+   ..+.+..++    ..+|++.||+++|| +.|+|||+|||+..
T Consensus        80 ~~~~~~~~~~~~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~----~~~~~i~Vd~~~~t-s~~~vya~GD~~~~  154 (185)
T d1q1ra1          80 TQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCELASAAGL----QVDNGIVINEHMQT-SDPLIMAVGDCARF  154 (185)
T ss_dssp             CCEEEEETTTTEEEETTSCEEECSEEEECCCEEEEEECCHHHHHTTC----CBSSSEECCTTSBC-SSTTEEECGGGEEE
T ss_pred             ceeeeecccccEEEeeceeEEEeeeeeeeeecccCCCCchhHHhCCc----cccCccccCCcccc-chhhhhcchhhhcc
Confidence            88887777766888899999999999999998764   344444433    34678999999998 89999999999876


Q ss_pred             Cc--------cchHHHHHHHHHHHHHHHH
Q 017664          280 PE--------IKQGYLAQKHALVTAKNLK  300 (368)
Q Consensus       280 ~~--------~~~~~~a~~~g~~aa~~i~  300 (368)
                      +.        ..+++.|.+||+.||+||+
T Consensus       155 ~~~~~~~~~~~~~a~~A~~~g~~aa~~i~  183 (185)
T d1q1ra1         155 HSQLYDRWVRIESVPNALEQARKIAAILC  183 (185)
T ss_dssp             EETTTTEEEECCSHHHHHHHHHHHHHHHT
T ss_pred             ccccCCcccchhhHHHHHHHHHHHHHHcc
Confidence            43        2368899999999999996

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.79  E-value=1.6e-19  Score=153.50  Aligned_cols=76  Identities=22%  Similarity=0.330  Sum_probs=60.9

Q ss_pred             EEecCEEEEccC-CCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHH
Q 017664          222 TIDTDCHFMCTG-KAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLK  300 (368)
Q Consensus       222 ~i~~d~vi~a~G-~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~  300 (368)
                      ...++.++++.| ..|.......+.+++++|++|+|.||+++|| |.|+|||+|||++.|.  +.+.|..+|+.||+||+
T Consensus       146 ~~~~~~~~l~~~~~~~~~~~~~~e~~g~~~d~~G~I~vd~~~~T-svpgVyAaGDv~~~~~--l~~~A~~eG~~Aa~~i~  222 (229)
T d1ojta1         146 IVAFKNCIIAAGSRAPNGKLISAEKAGVAVTDRGFIEVDKQMRT-NVPHIYAIGDIVGQPM--LAHKAVHEGHVAAENCA  222 (229)
T ss_dssp             EEEEEEEEECCCEEEECGGGTTGGGTTCCCCTTSCCCCCTTSBC-SSTTEEECGGGTCSSC--CHHHHHHHHHHHHHHHT
T ss_pred             ceecceEEEEecccCCcccccchhhhCccCCCCCCEEcCCCccC-CCCCEEEEEecCCCcc--hHHHHHHHHHHHHHHHc
Confidence            455665666655 4465555444556668999999999999999 8999999999998754  78899999999999997

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=9.8e-19  Score=148.87  Aligned_cols=72  Identities=22%  Similarity=0.283  Sum_probs=61.4

Q ss_pred             EEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHH
Q 017664          227 CHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKK  301 (368)
Q Consensus       227 ~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~  301 (368)
                      ..+.++|++|+.+.+..+.++++++++|++.||+++|| +.|+|||+|||...+.  +++.|..+|+.||++|..
T Consensus       156 ~~~~~~G~~p~~~~l~l~~~gv~~~~~g~i~vd~~~~T-~~~~v~A~GD~~~g~~--l~~~a~~~G~~aa~~i~~  227 (233)
T d1v59a1         156 EVTPFVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNS-KFPHIKVVGDVTFGPM--LAHKAEEEGIAAVEMLKT  227 (233)
T ss_dssp             EECCCSCEEECCTTSCTTTTTCCBCTTSCBCCCTTSBC-SSTTEEECGGGSSSCC--CHHHHHHHHHHHHHHHHH
T ss_pred             ccceecccccCCCCcCchhcCeEEcCCCcEEECCeEec-CCCCEEEEcCCcccHH--HHHHHHHHHHHHHHHHcc
Confidence            33448888998887666666678899999999999998 8999999999997654  788999999999999973

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.75  E-value=5.6e-19  Score=151.24  Aligned_cols=77  Identities=23%  Similarity=0.256  Sum_probs=64.6

Q ss_pred             cEEecCEEEEccCCCCCch--------hhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHH
Q 017664          221 ETIDTDCHFMCTGKAMASS--------WLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHA  292 (368)
Q Consensus       221 ~~i~~d~vi~a~G~~p~~~--------~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g  292 (368)
                      +.+++|.+++++|.+|...        .+..+.+++.++++|+|.||+++|| +.|+|||+|||++.+.  +.+.|..+|
T Consensus       148 e~i~~~~i~ia~G~~p~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~T-s~~~iyA~GDv~~~~~--~~~~A~~eg  224 (240)
T d1feca1         148 ETLDTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDAYSKT-NVDNIYAIGDVTDRVM--LTPVAINEG  224 (240)
T ss_dssp             EEEEEEEEEECCCEEECCCCSBEESCTTSCGGGGTCCBCTTSCBCCCTTCBC-SSTTEEECGGGGCSCC--CHHHHHHHH
T ss_pred             EEEecceEEEecCCceeEccccccccCCCCccccCeEECCCCcEEcCcccCc-CCCCEEEEEECCCCcc--chhhHHHHH
Confidence            5799999999999887642        1223344567899999999999998 8999999999997754  788999999


Q ss_pred             HHHHHHHH
Q 017664          293 LVTAKNLK  300 (368)
Q Consensus       293 ~~aa~~i~  300 (368)
                      +.||++|.
T Consensus       225 ~~aa~~~~  232 (240)
T d1feca1         225 AAFVDTVF  232 (240)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999998

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.75  E-value=1.1e-18  Score=147.35  Aligned_cols=45  Identities=24%  Similarity=0.369  Sum_probs=41.4

Q ss_pred             CCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHH
Q 017664          253 RGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLK  300 (368)
Q Consensus       253 ~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~  300 (368)
                      +|++.||+++|| +.|+|||+|||++.+.  +++.|..+|+.||++|+
T Consensus       169 ~g~i~vd~~~~T-~~~~I~A~GDv~~~~~--l~~~a~~~g~~~a~~i~  213 (220)
T d1lvla1         169 GAAIAIDERCQT-SMHNVWAIGDVAGEPM--LAHRAMAQGEMVAEIIA  213 (220)
T ss_dssp             TTEECCCTTCBC-SSTTEEECGGGGCSSC--CHHHHHHHHHHHHHHHT
T ss_pred             CCcccccchhhc-CCCCEEEEEEeCCccc--chhhhhhhHHHHHHHHc
Confidence            588999999999 8999999999998754  89999999999999987

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.74  E-value=1.5e-17  Score=125.73  Aligned_cols=105  Identities=24%  Similarity=0.368  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc-ccCchhHHHHHHHHHcCCcEEEecc
Q 017664          125 RLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE-FVGSRASQIALDWLTSKKVEVILNQ  203 (368)
Q Consensus       125 ~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~  203 (368)
                      .+.++....+.+..+++++|||+|++|+|+|..|++  .+.+|+++++++++++ .+++++.+.+.+.++++||++++++
T Consensus        16 tl~Da~~l~~~~~~~~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~   93 (121)
T d1d7ya2          16 TLEDARRIQAGLRPQSRLLIVGGGVIGLELAATART--AGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFER   93 (121)
T ss_dssp             SHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEESC
T ss_pred             CHHHHHHHHHhhhcCCeEEEECcchhHHHHHHHhhc--ccceEEEEeeccccccccCCHHHHHHHHHHHHHCCcEEEeCC
Confidence            456666666667778999999999999999999996  5899999999999987 6799999999999999999999999


Q ss_pred             eeeecccCCCeEEcCCCcEEecCEEEEccC
Q 017664          204 SVTLNTISDGLIETSSGETIDTDCHFMCTG  233 (368)
Q Consensus       204 ~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G  233 (368)
                      .++++..  +.+.+.||+++++|++|+|+|
T Consensus        94 ~v~~~~~--~~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          94 SVTGSVD--GVVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             CEEEEET--TEEEETTSCEEECSEEEECSC
T ss_pred             EEEEEeC--CEEEECCCCEEECCEEEEeeC
Confidence            9987653  478999999999999999998

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=5.3e-18  Score=127.53  Aligned_cols=112  Identities=20%  Similarity=0.197  Sum_probs=95.1

Q ss_pred             CCCchHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCc
Q 017664          118 VPKSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKV  197 (368)
Q Consensus       118 ~p~~~~~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv  197 (368)
                      +|+.+  ...+.....+....+++++|||+|++|+|+|..+.+  .+.+|+++++++++++.+++++.+.+.+.++++||
T Consensus         2 iPG~e--~~~t~~~~~~l~~~p~~vvIiGgG~ig~E~A~~l~~--~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV   77 (116)
T d1gesa2           2 IPGVE--YGIDSDGFFALPALPERVAVVGAGYIGVELGGVING--LGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGP   77 (116)
T ss_dssp             STTGG--GSBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSC
T ss_pred             cCCcc--ccCCHHHHhChhhCCCEEEEECCChhhHHHHHHhhc--cccEEEEEeecchhhhhcchhhHHHHHHHHHHCCC
Confidence            56643  223334444444458999999999999999999985  58999999999999999999999999999999999


Q ss_pred             EEEecceeeecccCCC---eEEcCCCcEEecCEEEEccC
Q 017664          198 EVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTG  233 (368)
Q Consensus       198 ~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G  233 (368)
                      ++++++.++++..+++   .+.+++|+++++|.+|+|+|
T Consensus        78 ~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          78 QLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             EEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             EEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence            9999999999877644   67889999999999999998

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.71  E-value=3.3e-17  Score=123.48  Aligned_cols=98  Identities=23%  Similarity=0.291  Sum_probs=88.0

Q ss_pred             hcCCeEEEEcCchhHHHHHHHHhhhC-CCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCC-C-
Q 017664          137 KSANSVLIVGGGPTGVELAGEIAVDF-PDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISD-G-  213 (368)
Q Consensus       137 ~~~~~v~VvG~g~~~~e~a~~l~~~~-~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~-  213 (368)
                      ..+++++|||+|++|+|+|..+.+.. .+.+|+++++.+++++.+++++.+.+++.++++||++++++.+++++.++ + 
T Consensus        16 ~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~   95 (117)
T d1feca2          16 EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGT   95 (117)
T ss_dssp             SCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSC
T ss_pred             ccCCeEEEECCChHHHHHHHHhHhhcccccccceecccccccccccchhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCE
Confidence            45799999999999999998776532 47899999999999999999999999999999999999999999997653 3 


Q ss_pred             -eEEcCCCcEEecCEEEEccCC
Q 017664          214 -LIETSSGETIDTDCHFMCTGK  234 (368)
Q Consensus       214 -~v~~~~g~~i~~d~vi~a~G~  234 (368)
                       .+.+++|+++++|.||+|+|+
T Consensus        96 ~~v~~~~g~~i~~D~Vi~a~GR  117 (117)
T d1feca2          96 RHVVFESGAEADYDVVMLAIGR  117 (117)
T ss_dssp             EEEEETTSCEEEESEEEECSCE
T ss_pred             EEEEECCCCEEEcCEEEEecCC
Confidence             688999999999999999994

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.69  E-value=3.5e-17  Score=139.51  Aligned_cols=64  Identities=23%  Similarity=0.250  Sum_probs=50.1

Q ss_pred             CCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHH
Q 017664          233 GKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLK  300 (368)
Q Consensus       233 G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~  300 (368)
                      |..|+...+.....++.+ .+|+|.||+++|| +.|+|||+|||.+.+.  +.+.|..+|+.||++|+
T Consensus       168 ~~~~~~~~l~~~~~gv~~-~~G~I~vde~~~T-~~~~iyAvGDv~~~~~--l~~~A~~eg~~aa~~i~  231 (238)
T d1aoga1         168 GRSPRTKDLQLQNAGVMI-KNGGVQVDEYSRT-NVSNIYAIGDVTNRVM--LTPVAINEAAALVDTVF  231 (238)
T ss_dssp             CEEECCGGGCGGGTTCCE-ETTEECCCTTCBC-SSTTEEECGGGGTSCC--CHHHHHHHHHHHHHHHH
T ss_pred             ccccceeeecccccEEEE-cCCeEEecCCeee-ccCCEEEEEEecCCcc--chhhHHHHHHHHHHHHc
Confidence            334444444444444444 3799999999999 8999999999998754  78899999999999997

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.69  E-value=8.7e-17  Score=121.00  Aligned_cols=105  Identities=24%  Similarity=0.310  Sum_probs=88.9

Q ss_pred             HHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhC-CCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceee
Q 017664          128 QYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDF-PDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVT  206 (368)
Q Consensus       128 ~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~-~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~  206 (368)
                      +.+........+++++|||+|++|+|+|..+.... .+.+|+++++++++++.+++++.+.+.+.++++||+++++++++
T Consensus         9 t~~~~~~l~~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~v~~~~~v~   88 (117)
T d1aoga2           9 SSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPA   88 (117)
T ss_dssp             CHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESCCEE
T ss_pred             cHHHHhCchhcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcccchHHHHHHHHHHHhcCcEEEcCCEEE
Confidence            33333333445799999999999999998877543 24689999999999999999999999999999999999999999


Q ss_pred             ecccCC-C--eEEcCCCcEEecCEEEEcc
Q 017664          207 LNTISD-G--LIETSSGETIDTDCHFMCT  232 (368)
Q Consensus       207 ~i~~~~-~--~v~~~~g~~i~~d~vi~a~  232 (368)
                      +++... +  .+.+++|++++||.||+|.
T Consensus        89 ~ie~~~~~~~~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          89 KVELNADGSKSVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             EEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred             EEEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence            997543 3  6889999999999999984

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.68  E-value=7.3e-17  Score=121.10  Aligned_cols=112  Identities=18%  Similarity=0.224  Sum_probs=92.7

Q ss_pred             CCCCCchHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcC
Q 017664          116 ESVPKSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSK  195 (368)
Q Consensus       116 ~~~p~~~~~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~  195 (368)
                      |.+|+.+  ...+...... +..+++++|||+|++|+|+|..++  ..+.+|+++++++++++.+++++.+.+.+.++++
T Consensus         2 P~IpG~e--~~~ts~~~~~-l~~p~~v~IiGgG~iG~E~A~~l~--~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~   76 (117)
T d1onfa2           2 PPVKGIE--NTISSDEFFN-IKESKKIGIVGSGYIAVELINVIK--RLGIDSYIFARGNRILRKFDESVINVLENDMKKN   76 (117)
T ss_dssp             CSCTTGG--GCEEHHHHTT-CCCCSEEEEECCSHHHHHHHHHHH--TTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHT
T ss_pred             cccCCHh--HcCchhHHhc-cCCCCEEEEECCchHHHHHHHHHH--hccccceeeehhccccccccHHHHHHHHHHHHhC
Confidence            6677753  2223333322 345899999999999999999998  4699999999999999999999999999999999


Q ss_pred             CcEEEecceeeecccCC-C--eEEcCCCcEEe-cCEEEEcc
Q 017664          196 KVEVILNQSVTLNTISD-G--LIETSSGETID-TDCHFMCT  232 (368)
Q Consensus       196 gv~i~~~~~v~~i~~~~-~--~v~~~~g~~i~-~d~vi~a~  232 (368)
                      ||++++++.+++++..+ +  .+.+++|++++ +|.||||.
T Consensus        77 gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          77 NINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             TCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred             CCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence            99999999999997543 3  68899998875 79999984

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.5e-16  Score=123.21  Aligned_cols=110  Identities=22%  Similarity=0.308  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhh--CCCCeEEEEecCccccc-ccCchhHHHHHHHHHcCCcEEEe
Q 017664          125 RLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVD--FPDKKVILVHRGPKLLE-FVGSRASQIALDWLTSKKVEVIL  201 (368)
Q Consensus       125 ~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~--~~~~~v~~i~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~  201 (368)
                      ++.++....+.....++++|||+|++|+|+|..|.+.  ..+.+|+++++.+++++ .+++++.+.+.+.++++||++++
T Consensus        23 ~~~d~~~l~~~~~~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~~GV~~~~  102 (137)
T d1m6ia2          23 KIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMP  102 (137)
T ss_dssp             SHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEEC
T ss_pred             CHHHHHHHHHHhhcCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHhCCcEEEe
Confidence            4566666666667799999999999999999998642  24789999999999887 57999999999999999999999


Q ss_pred             cceeeecccCCC--eEEcCCCcEEecCEEEEccCC
Q 017664          202 NQSVTLNTISDG--LIETSSGETIDTDCHFMCTGK  234 (368)
Q Consensus       202 ~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~  234 (368)
                      ++.|.+++.+++  .+.++||+++++|.||+|+|.
T Consensus       103 ~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2         103 NAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGL  137 (137)
T ss_dssp             SCCEEEEEEETTEEEEEETTSCEEEESEEEECCCE
T ss_pred             CCEEEEEEecCCEEEEEECCCCEEECCEEEEeecC
Confidence            999999987766  788999999999999999983

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.68  E-value=2.7e-16  Score=129.45  Aligned_cols=158  Identities=19%  Similarity=0.190  Sum_probs=119.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc-----------------cc----ccCchhHHHHHHHHHcCCc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL-----------------LE----FVGSRASQIALDWLTSKKV  197 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~-----------------l~----~~~~~~~~~~~~~l~~~gv  197 (368)
                      .++|+|||||++|+++|..+.+  .+.++.++++....                 .+    ...+++...+.+++++.|+
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar--~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~   82 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAAR--AELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGT   82 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTC
T ss_pred             cceEEEECCCHHHHHHHHHHHH--cCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhcc
Confidence            5789999999999999999885  47888888754321                 00    1234566777778888999


Q ss_pred             EEEecceeeecccCCC-eEEcCCCcEEecCEEEEccCC-----CCCchhhhccccccccCCCCcEEeCC-CeeecCCCCe
Q 017664          198 EVILNQSVTLNTISDG-LIETSSGETIDTDCHFMCTGK-----AMASSWLRETILKDSLDGRGRLMVDE-NLRVRGFKNV  270 (368)
Q Consensus       198 ~i~~~~~v~~i~~~~~-~v~~~~g~~i~~d~vi~a~G~-----~p~~~~~~~~~l~~~~~~~g~i~vd~-~~~~~~~~~i  270 (368)
                      ++... .|..++..+. .....+..+..+|.+++++|.     .|+..++.. +  ++++++|+|.+|+ .++| +.|+|
T Consensus        83 ~i~~~-~V~~~~~~~~~~~v~~~~~~~~~~~~~~a~g~~~~g~~p~~~~~~~-~--veld~~G~i~~~~~~~~T-s~~GV  157 (192)
T d1vdca1          83 TIFTE-TVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKGHEPATKFLDG-G--VELDSDGYVVTKPGTTQT-SVPGV  157 (192)
T ss_dssp             EEECC-CCCEEECSSSSEEEECSSEEEEEEEEEECCCEEECCEEESCGGGTT-S--SCBCTTSCBCCCTTSCBC-SSTTE
T ss_pred             eeeee-eEEecccccCcEEecccceeeeeeeEEEEeeeeecccCchHHHhcC-c--eeecCCCeEEeCCCceEe-cCCCE
Confidence            99765 5666665544 233344457999999999985     366666553 2  3788999999996 6777 89999


Q ss_pred             EEecccCCCCccchHHHHHHHHHHHHHHHHHHHc
Q 017664          271 FAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMM  304 (368)
Q Consensus       271 fa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~  304 (368)
                      ||+|||.+.+. +++..|..+|..||.++.++|+
T Consensus       158 ~a~GDv~~~~~-r~~v~A~g~G~~aA~~~~~yl~  190 (192)
T d1vdca1         158 FAAGDVQDKKY-RQAITAAGTGCMAALDAEHYLQ  190 (192)
T ss_dssp             EECGGGGCSSC-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeeecCCccc-ceEEEEEechHHHHHHHHHHHh
Confidence            99999998643 4688999999999999998874

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.67  E-value=4.1e-17  Score=123.09  Aligned_cols=109  Identities=17%  Similarity=0.233  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEec
Q 017664          123 TERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILN  202 (368)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~  202 (368)
                      .+.+.+.....+.-..+++++|||+|++|+|+|..+++  .|.+|+++++.+++++.+++++.+.+++.++++||+++++
T Consensus         6 ~~~v~~s~~~l~l~~~p~~i~IiG~G~ig~E~A~~l~~--~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~Gv~i~~~   83 (119)
T d3lada2           6 QDVIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWAR--LGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLG   83 (119)
T ss_dssp             SSSEEEHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEET
T ss_pred             CCEEEchhHhhCcccCCCeEEEECCChHHHHHHHHHHH--cCCceEEEEeecccCCcccchhHHHHHHHHHhcCceeecC
Confidence            33444455554444568999999999999999999985  6999999999999999999999999999999999999999


Q ss_pred             ceeeecccCCC--eEEcCCC---cEEecCEEEEccC
Q 017664          203 QSVTLNTISDG--LIETSSG---ETIDTDCHFMCTG  233 (368)
Q Consensus       203 ~~v~~i~~~~~--~v~~~~g---~~i~~d~vi~a~G  233 (368)
                      +++++++.+++  .+.+.++   +++++|.|++|+|
T Consensus        84 ~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          84 ARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             CEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             cEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence            99999987766  4554333   5899999999998

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.66  E-value=2.4e-16  Score=119.45  Aligned_cols=113  Identities=22%  Similarity=0.354  Sum_probs=94.2

Q ss_pred             CCCCCch----HHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHH
Q 017664          116 ESVPKSR----TERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDW  191 (368)
Q Consensus       116 ~~~p~~~----~~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~  191 (368)
                      |.+|+.+    ...+.++....+....+++++|||||++|+|+|..|.+  .+.+|+++++++++++ +++++.+.+.+.
T Consensus         5 p~ipG~e~~~t~~~~~d~~~l~~~~~~~~~vvIiGgG~iG~E~A~~l~~--~g~~Vtlv~~~~~l~~-~d~~~~~~~~~~   81 (122)
T d1xhca2           5 PQIKGKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAE--AGYHVKLIHRGAMFLG-LDEELSNMIKDM   81 (122)
T ss_dssp             CCSBTGGGEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHH--TTCEEEEECSSSCCTT-CCHHHHHHHHHH
T ss_pred             cCCCCccceEccCCHHHHHHHHHHhhcCCcEEEECCcHHHHHHHHHhhc--ccceEEEEeccccccC-CCHHHHHHHHHH
Confidence            5566642    23466666666777778999999999999999999985  5899999999998876 799999999999


Q ss_pred             HHcCCcEEEecceeeecccCCCeEEcCCCcEEecCEEEEccCC
Q 017664          192 LTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGK  234 (368)
Q Consensus       192 l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~  234 (368)
                      ++++||++++++.+.+++.+  .+ +.+++++++|.+|+|+|.
T Consensus        82 l~~~GV~~~~~~~v~~~~~~--~v-~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          82 LEETGVKFFLNSELLEANEE--GV-LTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             HHHTTEEEECSCCEEEECSS--EE-EETTEEEECSCEEEECCE
T ss_pred             HHHCCcEEEeCCEEEEEeCC--EE-EeCCCEEECCEEEEEEEe
Confidence            99999999999999877643  44 446678999999999994

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.65  E-value=3.7e-16  Score=120.13  Aligned_cols=108  Identities=19%  Similarity=0.249  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc-ccCchhHHHHHHHHHcCCcEEEec
Q 017664          124 ERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE-FVGSRASQIALDWLTSKKVEVILN  202 (368)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~  202 (368)
                      ..+.+.....+....+++++|||+|++|+|+|..+.+  .+.+|+++++.+++++ .+++.+.+.+.+.++++||+++++
T Consensus        20 r~~~d~~~l~~~~~~~k~v~VIGgG~iG~E~A~~l~~--~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV~i~~~   97 (133)
T d1q1ra2          20 RTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIK--ANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTG   97 (133)
T ss_dssp             SSHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECS
T ss_pred             CCHHHHHHHHHhhccCCEEEEECCchHHHHHHHHHHh--hCcceeeeeecccccccccchhhhhhhhhcccccccEEEeC
Confidence            4455666666666678999999999999999999986  5899999999999987 468889999999999999999999


Q ss_pred             ceeeecccCCC-----eEEcCCCcEEecCEEEEccC
Q 017664          203 QSVTLNTISDG-----LIETSSGETIDTDCHFMCTG  233 (368)
Q Consensus       203 ~~v~~i~~~~~-----~v~~~~g~~i~~d~vi~a~G  233 (368)
                      +.++.++...+     .+.+++|+++++|.||+|+|
T Consensus        98 ~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          98 TQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             CCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             CeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            99998876532     57899999999999999998

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.65  E-value=1.9e-19  Score=153.43  Aligned_cols=166  Identities=17%  Similarity=0.120  Sum_probs=100.5

Q ss_pred             eccCC-cCCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeeccccc-----C
Q 017664            6 WGSTA-AGLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYL-----S   78 (368)
Q Consensus         6 ~~~~~-~~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~   78 (368)
                      |.++. ++....++|+|||||||||+||..|+ +|++|+|+|+++.+|+.+......................+     .
T Consensus        38 ~~p~~~~~~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (233)
T d1djqa3          38 WHPEKFRQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKK  117 (233)
T ss_dssp             CCSSCCCCCSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHHHHHTT
T ss_pred             CCCCccCcccCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccccccceeecccccchhHHHHHHHHhhc
Confidence            34433 33456789999999999999999998 59999999999998866543221111000000000000000     0


Q ss_pred             ceeEEEeEEEEeeccEEEecCCeEEEecEEEEecCCCCCCCCchHHHHHHHHHHH------HHHhcCCeEEEEcCchhHH
Q 017664           79 NVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQYEKDF------EKVKSANSVLIVGGGPTGV  152 (368)
Q Consensus        79 ~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~~~~~~~~~~~------~~~~~~~~v~VvG~g~~~~  152 (368)
                      ....    ......+.+...+...+.||++|+|||+.+..|..............      ......++++|+|+|++|+
T Consensus       118 ~~~~----~~~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~  193 (233)
T d1djqa3         118 NKES----QLALGQKPMTADDVLQYGADKVIIATGASECTLWNELKARESEWAENDIKGIYLIGDAEAPRLIADATFTGH  193 (233)
T ss_dssp             CTTC----EEECSCCCCCHHHHHTSCCSEEEECCCEECCHHHHHHHHTTHHHHHTTCCEEEECGGGTSCCCHHHHHHHHH
T ss_pred             ceee----eeecccccccchhhhhhccceeeeccCCCcccccccccccccccchhhhhhhhhccccCCceeEecCchHHH
Confidence            1110    11111122222333457899999999999766654433222211111      0113468899999999999


Q ss_pred             HHHHHHhhhCCCCeEEEEecCcccc
Q 017664          153 ELAGEIAVDFPDKKVILVHRGPKLL  177 (368)
Q Consensus       153 e~a~~l~~~~~~~~v~~i~~~~~~l  177 (368)
                      |+|.+|.+  .+.+|+++++++.++
T Consensus       194 e~A~~l~~--~g~~Vtli~r~~~~~  216 (233)
T d1djqa3         194 RVAREIEE--ANPQIAIPYKRETIA  216 (233)
T ss_dssp             HHHHTTTS--SCTTSCCCCCCCCCC
T ss_pred             HHHHHHHh--cCCceEEEEeccccc
Confidence            99999984  578899999987754

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=8.3e-16  Score=126.29  Aligned_cols=158  Identities=19%  Similarity=0.282  Sum_probs=116.1

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc------------cc----ccCchhHHHHHHHHHcCCcEEEe
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL------------LE----FVGSRASQIALDWLTSKKVEVIL  201 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~------------l~----~~~~~~~~~~~~~l~~~gv~i~~  201 (368)
                      +.++|+|||||++|+++|..+++  .+.+|+++++....            .+    ....++.+.....+.+.++++..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar--~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAAR--ANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIF   81 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHT--TTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEEC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHH--cCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEec
Confidence            46789999999999999999884  58899999875421            11    12334566677788889999876


Q ss_pred             cceeeecccCCC--eEEcCCCcEEecCEEEEccCCCCC-----chhhhccccccccCCCCcEEeCC-----CeeecCCCC
Q 017664          202 NQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMA-----SSWLRETILKDSLDGRGRLMVDE-----NLRVRGFKN  269 (368)
Q Consensus       202 ~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~-----~~~~~~~~l~~~~~~~g~i~vd~-----~~~~~~~~~  269 (368)
                      . .|..+...++  .+... ..+++++.+++++|..|.     ..++... +  ++ ++|++.+|+     .++| +.|+
T Consensus        82 ~-~V~~~~~~~~~~~v~~~-~~~~~~~~viva~G~~~~~~~~~~~~~~~~-~--e~-~~g~i~~~~~~~~~~~~T-~v~g  154 (190)
T d1trba1          82 D-HINKVDLQNRPFRLNGD-NGEYTCDALIIATGASARYHSPNTAIFEGQ-L--EL-ENGYIKVQSGIHGNATQT-SIPG  154 (190)
T ss_dssp             C-CEEEEECSSSSEEEEES-SCEEEEEEEEECCCEEECCEEESCGGGTTT-S--CE-ETTEECCCCSSSSCTTBC-SSTT
T ss_pred             c-eeEEEecCCCcEEEEEe-eeeEeeeeeeeecceeeeeecccceeecce-E--ec-CCcEEEEecCCccccccc-ccCe
Confidence            5 5776666655  44444 457999999999997653     2333221 1  23 368899984     4577 8999


Q ss_pred             eEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcC
Q 017664          270 VFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMG  305 (368)
Q Consensus       270 ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g  305 (368)
                      ||++|||++.+ .+++..|..+|..||.++.++|..
T Consensus       155 V~aaGDv~~~~-~~q~i~Aag~G~~AA~~a~~yl~~  189 (190)
T d1trba1         155 VFAAGDVMDHI-YRQAITSAGTGCMAALDAERYLDG  189 (190)
T ss_dssp             EEECGGGGCSS-SCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEeEEecCcc-eeEEEEEeccHHHHHHHHHHHHhh
Confidence            99999998753 457889999999999999988753

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.65  E-value=9e-17  Score=121.90  Aligned_cols=109  Identities=13%  Similarity=0.189  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecc
Q 017664          124 ERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQ  203 (368)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~  203 (368)
                      +++.+.....+....+++++|+|+|++|+|+|..+++  .|.+|+++++++++++.+++++.+.+.+.++++||++++++
T Consensus        11 ~~i~ts~~~l~l~~~p~~vvIiGgG~IG~E~A~~~~~--~G~~Vtive~~~~il~~~d~~~~~~l~~~l~~~gv~~~~~~   88 (125)
T d1ojta2          11 PRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYST--LGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNT   88 (125)
T ss_dssp             TTEECHHHHTTCCCCCSEEEEESCSHHHHHHHHHHHH--HTCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEECSC
T ss_pred             CcEEcHHHhhCccccCCeEEEECCCHHHHHHHHHhhc--CCCEEEEEEeeccccccchhhHHHHHHHHHHHcCcccccCc
Confidence            3345555555555668999999999999999999985  58999999999999999999999999999999999999999


Q ss_pred             eeeecccCCC--eEE--cCCC--cEEecCEEEEccCC
Q 017664          204 SVTLNTISDG--LIE--TSSG--ETIDTDCHFMCTGK  234 (368)
Q Consensus       204 ~v~~i~~~~~--~v~--~~~g--~~i~~d~vi~a~G~  234 (368)
                      .+.+++.+++  .+.  ..+|  +++++|.+++|+|+
T Consensus        89 ~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~GR  125 (125)
T d1ojta2          89 KTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR  125 (125)
T ss_dssp             EEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred             EEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecCC
Confidence            9999987665  333  3443  47999999999994

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=1.3e-16  Score=120.71  Aligned_cols=104  Identities=15%  Similarity=0.262  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEeccee
Q 017664          126 LSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSV  205 (368)
Q Consensus       126 ~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v  205 (368)
                      +.+++...+....+++++|||+|++|+|+|..|.+  .+.+|++++++++++|.+++++.+.+++.++++||++++++.+
T Consensus        10 v~ts~~~~~l~~~p~~~vIiG~G~ig~E~A~~l~~--lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV~i~~~~~v   87 (122)
T d1v59a2          10 IVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSR--LGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKV   87 (122)
T ss_dssp             EECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEE
T ss_pred             EEehHHhhCcccCCCeEEEECCCchHHHHHHHHHh--hCcceeEEEeccccchhhhhhhHHHHHHHHHhccceEEeCCEE
Confidence            33444444444458999999999999999999995  6999999999999999999999999999999999999999999


Q ss_pred             eecccCCC----eEEcCCC-----cEEecCEEEEc
Q 017664          206 TLNTISDG----LIETSSG-----ETIDTDCHFMC  231 (368)
Q Consensus       206 ~~i~~~~~----~v~~~~g-----~~i~~d~vi~a  231 (368)
                      ++++.+++    .+.+.++     +++++|.|++|
T Consensus        88 ~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          88 ISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             EEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             EEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            99876544    3343332     48999999986

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=9.6e-16  Score=128.67  Aligned_cols=108  Identities=19%  Similarity=0.189  Sum_probs=78.1

Q ss_pred             HHHHHHHHcCCcEEEecceeeecccCCCeEEcCCCcEEecCEEEEccCCCCCchhh------hccccccccCCCCcEEeC
Q 017664          186 QIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWL------RETILKDSLDGRGRLMVD  259 (368)
Q Consensus       186 ~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~------~~~~l~~~~~~~g~i~vd  259 (368)
                      ..+...+++.||++..........    .....+++.+.++.++++||..|..+.+      .....++.++++|++.+|
T Consensus        95 ~~~~~~l~~~gV~v~~~~~~~~~~----~~~~~~~~~~~~~~~iiatG~~p~ip~ip~~~~l~l~~~gv~~~~~~~i~~d  170 (217)
T d1gesa1          95 TSYENVLGKNNVDVIKGFARFVDA----KTLEVNGETITADHILIATGGRPSHPREPANDNINLEAAGVKTNEKGYIVVD  170 (217)
T ss_dssp             HHHHHHHHHTTCEEEESCCEEEET----TEEEETTEEEEEEEEEECCCEEECCCEEESCTTSCHHHHTCCBCTTSCBCCC
T ss_pred             HHHHHHHhCCeEEEEeeeccccee----eeecCCCceeeeeeeeeecCccccCCCCCCcCCcccccccEEEcCCccEeeC
Confidence            334556777889887665432211    1223456789999999999987653221      112234577889999999


Q ss_pred             CCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHH
Q 017664          260 ENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLK  300 (368)
Q Consensus       260 ~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~  300 (368)
                      +.+++ +.|+||++||+.....  +++.+.++|+.++.++.
T Consensus       171 ~~~~t-~~~~i~~iG~g~~g~e--la~~~~~~G~~v~~~~~  208 (217)
T d1gesa1         171 KYQNT-NIEGIYAVGDNTGAVE--LTPVAVAAGRRLSERLF  208 (217)
T ss_dssp             TTSBC-SSTTEEECSGGGTSCC--CHHHHHHHHHHHHHHHH
T ss_pred             chhcc-CCCcEEEECCCccHHH--HHHHHHHHHHHHHHHHh
Confidence            99999 7899999999987644  68889999999998876

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.61  E-value=5.8e-15  Score=111.76  Aligned_cols=106  Identities=16%  Similarity=0.192  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHh--cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc-ccCchhHHHHHHHHHcCCcEEEe
Q 017664          125 RLSQYEKDFEKVK--SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE-FVGSRASQIALDWLTSKKVEVIL  201 (368)
Q Consensus       125 ~~~~~~~~~~~~~--~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~  201 (368)
                      .+.+.....+...  ..++++|||+|++|+|+|..+.+  .+.+|+++++.+++++ .+++++...+.+.++++||++++
T Consensus        14 ~~~da~~i~~~~~~~~~k~vvViGgG~iG~E~A~~l~~--~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~gv~~~~   91 (123)
T d1nhpa2          14 GRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAK--AGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIAT   91 (123)
T ss_dssp             HHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEE
T ss_pred             CHHHHHHHHHHhhccCCCEEEEECChHHHHHHHHHhhc--cceEEEEEEecCcccccccchhhHHHHHHHhhcCCeEEEe
Confidence            4455555444442  47899999999999999999986  5899999999999887 57999999999999999999999


Q ss_pred             cceeeecccCCC-eEEcCCCcEEecCEEEEcc
Q 017664          202 NQSVTLNTISDG-LIETSSGETIDTDCHFMCT  232 (368)
Q Consensus       202 ~~~v~~i~~~~~-~v~~~~g~~i~~d~vi~a~  232 (368)
                      ++.+++++.++. ...+.||++++||++|+|.
T Consensus        92 ~~~v~~i~~~~~~~~v~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          92 GETVERYEGDGRVQKVVTDKNAYDADLVVVAV  123 (123)
T ss_dssp             SCCEEEEECSSBCCEEEESSCEEECSEEEECS
T ss_pred             CceEEEEEcCCCEEEEEeCCCEEECCEEEEEC
Confidence            999999987654 4456788899999999974

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.61  E-value=7.7e-16  Score=116.73  Aligned_cols=94  Identities=21%  Similarity=0.326  Sum_probs=83.8

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC----
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG----  213 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~----  213 (368)
                      .+++++|||+|++|+|+|..+++  .+.+|+++++.+++++.+++.+.+.+.+.++++||++++++.+.+++.+++    
T Consensus        21 ~~~~vvVvGgG~ig~E~A~~l~~--~g~~vt~i~~~~~~l~~~d~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~   98 (121)
T d1mo9a2          21 PGSTVVVVGGSKTAVEYGCFFNA--TGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQ   98 (121)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--cchhheEeeccchhhcccccchhhhhhhhhhccccEEEcCCEEEEEEecCCceEE
Confidence            47899999999999999999985  589999999999999999999999999999999999999999999987654    


Q ss_pred             ---eEEcCCCcEEecCEEEEccC
Q 017664          214 ---LIETSSGETIDTDCHFMCTG  233 (368)
Q Consensus       214 ---~v~~~~g~~i~~d~vi~a~G  233 (368)
                         .....+++++++|+||+|+|
T Consensus        99 ~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          99 AVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             EEEEEETTEEEEEECSCEEECCC
T ss_pred             EEEEEeCCCCEEEEcCEEEEEEC
Confidence               12345567899999999998

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.61  E-value=5.9e-16  Score=116.49  Aligned_cols=103  Identities=22%  Similarity=0.293  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceee
Q 017664          127 SQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVT  206 (368)
Q Consensus       127 ~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~  206 (368)
                      .+..........+++++|||+|++|+|+|..+.+  .+.+|+++++++++++.+++++.+.+.+.++++||++++++.++
T Consensus        10 ~~s~~~l~~~~~p~~v~IiGgG~ig~E~A~~l~~--~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI~i~~~~~v~   87 (117)
T d1ebda2          10 LDSTGALNLGEVPKSLVVIGGGYIGIELGTAYAN--FGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAK   87 (117)
T ss_dssp             ECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEEE
T ss_pred             EChhHhhChhhcCCeEEEECCCccceeeeeeecc--cccEEEEEEecceecccccchhHHHHHHHHHhcCCEEEcCCEEE
Confidence            3444555545568999999999999999999985  59999999999999999999999999999999999999999999


Q ss_pred             ecccCCC--eEEc-CCC--cEEecCEEEEc
Q 017664          207 LNTISDG--LIET-SSG--ETIDTDCHFMC  231 (368)
Q Consensus       207 ~i~~~~~--~v~~-~~g--~~i~~d~vi~a  231 (368)
                      +++.+++  .+.+ .+|  +++++|.||++
T Consensus        88 ~i~~~~~~~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          88 GAEEREDGVTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             EEEEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred             EEEEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence            9987655  3333 334  57999999974

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.3e-15  Score=115.85  Aligned_cols=112  Identities=24%  Similarity=0.260  Sum_probs=88.7

Q ss_pred             CCCchHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCc
Q 017664          118 VPKSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKV  197 (368)
Q Consensus       118 ~p~~~~~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv  197 (368)
                      +|+.+.  ..+.+.....-..+++++|||+|++|+|+|..+.+  .+.+|+++++++++++.+++++.+.+.+.++++||
T Consensus         3 IPG~e~--~~ts~~~~~l~~~pk~vvIvGgG~iG~E~A~~l~~--~G~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~Gv   78 (125)
T d3grsa2           3 IPGASL--GITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSA--LGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGV   78 (125)
T ss_dssp             STTGGG--SBCHHHHTTCCSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTC
T ss_pred             CCCccc--cCCHHHHhChhhcCCEEEEEcCCccHHHHHHHHhc--CCcEEEEEeeccccccchhhHHHHHHHHHHHHCCC
Confidence            566432  22333333333347999999999999999999985  68999999999999999999999999999999999


Q ss_pred             EEEecceeeecccCCC--e---EEcCCCc------EEecCEEEEccC
Q 017664          198 EVILNQSVTLNTISDG--L---IETSSGE------TIDTDCHFMCTG  233 (368)
Q Consensus       198 ~i~~~~~v~~i~~~~~--~---v~~~~g~------~i~~d~vi~a~G  233 (368)
                      ++++++++++++.+++  .   +...+|+      .+++|.+++|+|
T Consensus        79 ~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          79 EVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             EEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             EEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            9999999999976654  2   2233332      578999999987

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.60  E-value=2.5e-15  Score=129.23  Aligned_cols=120  Identities=9%  Similarity=0.081  Sum_probs=82.3

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCCC-----eEEcCCCcEEecCEEEEccCCCCCc---------hhhhccccc
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG-----LIETSSGETIDTDCHFMCTGKAMAS---------SWLRETILK  247 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-----~v~~~~g~~i~~d~vi~a~G~~p~~---------~~~~~~~l~  247 (368)
                      ..+.+.+.+.+++.||+++++++|+.++..++     .+...++.++.||.||+|||-...+         .+.+..++.
T Consensus       109 ~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtGG~S~p~~G~~g~g~~~a~~~~~~  188 (253)
T d2gqfa1         109 EQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGIP  188 (253)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTCC
T ss_pred             hHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCCcccccccCCCchHHHHHHhcccc
Confidence            35677888889999999999999998876443     2455677899999999999965322         233333332


Q ss_pred             ccc-C--CCCcEE---eCC-CeeecCCCCeEEecccCCCCcc---chHHHHHHHHHHHHHHHHH
Q 017664          248 DSL-D--GRGRLM---VDE-NLRVRGFKNVFAIGDITDIPEI---KQGYLAQKHALVTAKNLKK  301 (368)
Q Consensus       248 ~~~-~--~~g~i~---vd~-~~~~~~~~~ifa~GD~~~~~~~---~~~~~a~~~g~~aa~~i~~  301 (368)
                      +.- .  ..|.+.   +|+ +|+++..|++|.+|-+......   -.-++|+.+|..|+++|.+
T Consensus       189 i~~~~~~~~ggv~~~~i~~~t~es~~~~gl~~~ge~ldv~g~~gg~n~~~a~~s~~~~~~~~~~  252 (253)
T d2gqfa1         189 VIPPRAVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTGWLGGYNFQWAWSSAYACALSISR  252 (253)
T ss_dssp             EEEEEEEEEEEECGGGBCTTTCBBSSSTTEEECGGGBSCEECTTTHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccccccCCCCcccccCccchhhhcCCCcEEeeeEEEeeeecCCEehhhhHhHHHHHHHHHhc
Confidence            200 0  012232   443 6888889999999976653211   1346899999999999873

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.59  E-value=1.9e-15  Score=113.18  Aligned_cols=95  Identities=19%  Similarity=0.207  Sum_probs=81.8

Q ss_pred             hcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEE
Q 017664          137 KSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIE  216 (368)
Q Consensus       137 ~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~  216 (368)
                      ..+++++|+|+|++|+|+|..+++  .+.+|+++++.+++++.+++++.+.+.+.++++||+++++++|++++.......
T Consensus        19 ~~p~~vvIiGgG~~G~E~A~~l~~--~g~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~   96 (115)
T d1lvla2          19 ALPQHLVVVGGGYIGLELGIAYRK--LGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYENGCLLAN   96 (115)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHH--HTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEEEEEETTEEEEE
T ss_pred             cCCCeEEEECCCHHHHHHHHHHhh--cccceEEEeeeccccccccchhHHHHHHHHHhhcceEEcCcEEEEEcCCeEEEE
Confidence            457999999999999999999986  489999999999999999999999999999999999999999998863222233


Q ss_pred             cCC--CcEEecCEEEEccC
Q 017664          217 TSS--GETIDTDCHFMCTG  233 (368)
Q Consensus       217 ~~~--g~~i~~d~vi~a~G  233 (368)
                      ..+  ++++++|.|++|+|
T Consensus        97 ~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          97 DGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             CSSSCCCEECCSCEEECCC
T ss_pred             EcCCCeEEEEcCEEEEecC
Confidence            222  35899999999998

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.59  E-value=2.4e-15  Score=129.01  Aligned_cols=121  Identities=14%  Similarity=0.151  Sum_probs=82.4

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCCCCCc---------hhhhcccccccc
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGKAMAS---------SWLRETILKDSL  250 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~~p~~---------~~~~~~~l~~~~  250 (368)
                      .+.+.+.+.+++.||+++++++|+.+..+++   .+.+.+|+++++|.||+|+|-...+         .+....++.+.-
T Consensus       111 ~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vI~AtGg~S~p~~Gs~g~g~~~a~~~~~~~~~  190 (251)
T d2i0za1         111 SVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHTITE  190 (251)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSSSGGGSCSSHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCeEecCeEEEccCCccccccCCCcccchhcccceeeeee
Confidence            5667788889999999999999999987766   5788999999999999999965322         233333321100


Q ss_pred             CCCCcEEeC----CCeeecCCCCeEEecccCCCCcc---chHHHHHHHHHHHHHHHHHHH
Q 017664          251 DGRGRLMVD----ENLRVRGFKNVFAIGDITDIPEI---KQGYLAQKHALVTAKNLKKLM  303 (368)
Q Consensus       251 ~~~g~i~vd----~~~~~~~~~~ifa~GD~~~~~~~---~~~~~a~~~g~~aa~~i~~~l  303 (368)
                      ...+.+.++    ..+..+..|++|++|++......   .....|...|++++.++..+.
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~l~~~~~~gG~~~~~a~~~G~~a~~~~~~~~  250 (251)
T d2i0za1         191 LFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGGYNITSALVTGRIAGTTAGENA  250 (251)
T ss_dssp             EEEEEECGGGEETTTTEESSSBTEEECGGGBSCBCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeecccCccccCchhHHHhcCCCcEeeeeEEEccCCcchHHHHHHHHHHHHHHHHHHHhc
Confidence            000111111    23444578999999998643211   234678999999999987643

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.58  E-value=9.5e-16  Score=116.18  Aligned_cols=107  Identities=14%  Similarity=0.222  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecc
Q 017664          124 ERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQ  203 (368)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~  203 (368)
                      .++.+..........+++++|||+|++|+|+|..+.+  .|.+|+++++++++++.+++++...+.+.++++||++++++
T Consensus        10 ~~v~ts~~~l~l~~~p~~~viiG~G~iglE~A~~~~~--~G~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~   87 (123)
T d1dxla2          10 KKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGR--IGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKT   87 (123)
T ss_dssp             SSEECHHHHTTCSSCCSEEEESCCSHHHHHHHHHHHH--HTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSE
T ss_pred             CeEEeHHHhhCccccCCeEEEEccchHHHHHHHHHHh--cCCeEEEEEEccccCchhhhcchhhhhhhhhcccceEEcCC
Confidence            3444455544444568999999999999999999985  58999999999999999999999999999999999999999


Q ss_pred             eeeecccCCC--e--EEcC-CC--cEEecCEEEEcc
Q 017664          204 SVTLNTISDG--L--IETS-SG--ETIDTDCHFMCT  232 (368)
Q Consensus       204 ~v~~i~~~~~--~--v~~~-~g--~~i~~d~vi~a~  232 (368)
                      .+.+++.+++  .  +... +|  +++++|.+++|.
T Consensus        88 ~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          88 KVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             EEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             ceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            9999987655  2  3332 33  468999999874

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=1.1e-13  Score=112.67  Aligned_cols=159  Identities=25%  Similarity=0.271  Sum_probs=119.9

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc--cc--------cc----cCchhHHHHHHHHHcCCcEEEecceee
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK--LL--------EF----VGSRASQIALDWLTSKKVEVILNQSVT  206 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~--~l--------~~----~~~~~~~~~~~~l~~~gv~i~~~~~v~  206 (368)
                      .|+|||||++|+++|..+.+  .+.+|.+++++..  ..        +.    ..+.+...+...+++.+++......+.
T Consensus         3 DViIIGgGpaGl~AAi~aar--~G~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSAR--KGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSAS   80 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHT--TTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEE
T ss_pred             cEEEECcCHHHHHHHHHHHH--cCCeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccceee
Confidence            58999999999999998884  6889999986421  10        11    124555667777888999988887776


Q ss_pred             ecccCCC-----eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCc
Q 017664          207 LNTISDG-----LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPE  281 (368)
Q Consensus       207 ~i~~~~~-----~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~  281 (368)
                      .+.....     .....+++++.++.++.++|..++........+  .....|.+.+|...++ +.|+||++|||...+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~g~i~v~~~~~t-~~~gv~a~gd~~~~~~  157 (184)
T d1fl2a1          81 KLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEGAV--ERNRMGEIIIDAKCET-NVKGVFAAGDCTTVPY  157 (184)
T ss_dssp             EEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEESCGGGTTTS--CBCTTSCBCCCTTCBC-SSTTEEECSTTBSCSS
T ss_pred             eecccccccceeeeeeecceeeecccccccccccccccccccccc--cccccceeccCCceee-eCCCEEEEeeecCccc
Confidence            6544322     445566678999999999997755444433333  4566799999999998 8999999999998653


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHcC
Q 017664          282 IKQGYLAQKHALVTAKNLKKLMMG  305 (368)
Q Consensus       282 ~~~~~~a~~~g~~aa~~i~~~l~g  305 (368)
                       +....|..+|..+|.++.++|..
T Consensus       158 -~~~vva~g~G~~aA~~~~~~l~~  180 (184)
T d1fl2a1         158 -KQIIIATGEGAKASLSAFDYLIR  180 (184)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCcEEEEECcHHHHHHHHHHHhh
Confidence             46788999999999999988754

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=3.1e-16  Score=126.19  Aligned_cols=123  Identities=20%  Similarity=0.273  Sum_probs=78.2

Q ss_pred             cCCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeeccccc--CceeEEEeEE
Q 017664           11 AGLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYL--SNVKIVVSTA   87 (368)
Q Consensus        11 ~~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~   87 (368)
                      .+..++++|+|||||||||+||..|+ +|++|+|+|+.+.+|+.+.............+.+..+.+..  .++++...+.
T Consensus        38 ~~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~  117 (179)
T d1ps9a3          38 LPAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHT  117 (179)
T ss_dssp             CSCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCC
T ss_pred             CCCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCE
Confidence            34556789999999999999999997 69999999999998865331111111111111111111111  1455433221


Q ss_pred             EEeeccEEEecCCeEEEecEEEEecCCCCCCCCchHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHH
Q 017664           88 VSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVEL  154 (368)
Q Consensus        88 ~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~  154 (368)
                      +        +.+ ....||.+|+|||..|..++.+.            ...+++++|+|+|++++++
T Consensus       118 V--------t~~-~~~~~d~vilAtG~~~~~~~~pg------------~~~g~~v~vigggd~a~~~  163 (179)
T d1ps9a3         118 V--------TAD-QLQAFDETILASGIPNRALAQPL------------IDSGKTVHLIGGCDVAMEL  163 (179)
T ss_dssp             C--------CSS-SSCCSSEEEECCCEECCTTHHHH------------HTTTCCEEECGGGTCCSSC
T ss_pred             E--------ccc-ccccceeEEEeecCCCcccccch------------hccCCEEEEECCcHhhhhc
Confidence            1        112 23579999999999887665432            2358999999999988775

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=2e-14  Score=108.49  Aligned_cols=103  Identities=17%  Similarity=0.167  Sum_probs=82.5

Q ss_pred             HHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeee
Q 017664          128 QYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTL  207 (368)
Q Consensus       128 ~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~  207 (368)
                      +.+...+....+++++|||+|++|+|+|..+++  .+.+|+++.+. ++++.+|+++.+.+.+.++++||++++++.|++
T Consensus         9 tsd~~~~l~~~P~~vvIIGgG~iG~E~A~~l~~--lG~~Vtii~~~-~~l~~~D~~~~~~l~~~l~~~Gv~i~~~~~v~~   85 (122)
T d1h6va2           9 SSDDLFSLPYCPGKTLVVGASYVALECAGFLAG--IGLDVTVMVRS-ILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTK   85 (122)
T ss_dssp             CHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESS-SSSTTSCHHHHHHHHHHHHHTTEEEEESCEEEE
T ss_pred             cchHHhCcccCCCeEEEECCCccHHHHHHHHhh--cCCeEEEEEec-hhhccCCHHHHHHHHHHHHHCCCEEEECCEEEE
Confidence            344444444568999999999999999999985  68999999875 688999999999999999999999999999988


Q ss_pred             cccCC----C--eEEc--CCC-c--EEecCEEEEccC
Q 017664          208 NTISD----G--LIET--SSG-E--TIDTDCHFMCTG  233 (368)
Q Consensus       208 i~~~~----~--~v~~--~~g-~--~i~~d~vi~a~G  233 (368)
                      ++..+    +  .+..  .++ +  .+++|.|++|+|
T Consensus        86 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          86 IEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             EEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             EEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence            86432    1  3332  222 2  567999999998

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.50  E-value=7.4e-16  Score=136.63  Aligned_cols=106  Identities=14%  Similarity=-0.037  Sum_probs=68.0

Q ss_pred             CcEEEecceeeecccCCC--------eEE-----cCCCcEEecCEEEEccCCCCCchhhhc--cccccc---------cC
Q 017664          196 KVEVILNQSVTLNTISDG--------LIE-----TSSGETIDTDCHFMCTGKAMASSWLRE--TILKDS---------LD  251 (368)
Q Consensus       196 gv~i~~~~~v~~i~~~~~--------~v~-----~~~g~~i~~d~vi~a~G~~p~~~~~~~--~~l~~~---------~~  251 (368)
                      +.+++++++|++|+.+.+        .+.     ..+++.+++|.||+|++...-.. +..  ......         .+
T Consensus       243 ~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l~~-l~~~~~~~~~~~~~~~~~~~~~  321 (373)
T d1seza1         243 EDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKS-MKIAKRGNPFLLNFIPEVYGHN  321 (373)
T ss_dssp             TTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHT-SEEESSSSBCCCTTSCCCCCTT
T ss_pred             cceEecCCEEEEEEEeCCcccccccceEEecccCCCCceEEECCEEEECCchHHhhh-cccccCCCccchhhhccccccC
Confidence            678899999998875433        222     12345789999999986421100 000  000000         00


Q ss_pred             CCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCC
Q 017664          252 GRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGR  306 (368)
Q Consensus       252 ~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~  306 (368)
                      .++.+.+++.+++ +.|+||++||+.+.+   ....|+.+|+.||+.|.++|+..
T Consensus       322 ~~~~~~~~~~~~t-~~pglf~aGd~~~g~---~~~~A~~~G~~aA~~i~~~L~~~  372 (373)
T d1seza1         322 YDSVLDAIDKMEK-NLPGLFYAGNHRGGL---SVGKALSSGCNAADLVISYLESV  372 (373)
T ss_dssp             HHHHHHHHHHHHH-HSTTEEECCSSSSCS---SHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             CCcEeecccccCC-CCCCEEEEecCCCch---hHHHHHHHHHHHHHHHHHHHhcC
Confidence            1122334455677 689999999998765   46789999999999999999754

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.43  E-value=4.6e-14  Score=126.20  Aligned_cols=112  Identities=13%  Similarity=0.092  Sum_probs=67.2

Q ss_pred             HHHHHHcCCcEEEecceeeecccCCC--eEE--c--CCCcEEecCEEEEccCCC--------CCchhhhccccccccCCC
Q 017664          188 ALDWLTSKKVEVILNQSVTLNTISDG--LIE--T--SSGETIDTDCHFMCTGKA--------MASSWLRETILKDSLDGR  253 (368)
Q Consensus       188 ~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~--~--~~g~~i~~d~vi~a~G~~--------p~~~~~~~~~l~~~~~~~  253 (368)
                      ....+++.|++++++++|++|+.+++  .+.  .  .++++++||.||+|++..        |..+......+.....+.
T Consensus       241 ~~~l~~~~g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~~~l~~i~~~p~l~~~~~~ai~~~~~~~  320 (370)
T d2iida1         241 PTAMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVFTPY  320 (370)
T ss_dssp             HHHHHHHTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTTSEEESCCCHHHHHHHHHCCCTT
T ss_pred             HHHHHHhcCCccccCceEEEEEEeCCeEEEEEEecCCCeEEEEeeEEEecCCHHHHhhCccCCCCCHHHHHHHHhcCCcc
Confidence            34456778999999999999988776  332  2  345689999999998532        110000000000000001


Q ss_pred             CcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHH
Q 017664          254 GRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKK  301 (368)
Q Consensus       254 g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~  301 (368)
                      ......+.+.. ...+||++||++..+. .....|+.+|..||.+|..
T Consensus       321 ~~~~~~~~~~~-~~g~v~~aGd~~~~~~-~~~~~a~~sG~~aA~~i~~  366 (370)
T d2iida1         321 QFQHFSDPLTA-SQGRIYFAGEYTAQAH-GWIDSTIKSGLRAARDVNL  366 (370)
T ss_dssp             HHHHHHHHHHC-CBTTEEECSGGGSSSS-SCHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhhc-ccCCEEEecccccCCC-cccHHHHHHHHHHHHHHHh
Confidence            11112222333 3567999999876543 2356799999999999974

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.40  E-value=3.1e-15  Score=129.90  Aligned_cols=113  Identities=17%  Similarity=0.049  Sum_probs=75.2

Q ss_pred             HHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCCCchhhhcc--cccc----ccCCCCcEEeC----
Q 017664          192 LTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMASSWLRET--ILKD----SLDGRGRLMVD----  259 (368)
Q Consensus       192 l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~--~l~~----~~~~~g~i~vd----  259 (368)
                      .+..+..++.++.+..+...++  .+.+.+|+.+++|.++++.............  .++.    ..+..++..++    
T Consensus       220 ~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~~~~~~~~~~~~~  299 (347)
T d1b5qa1         220 GKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVGVNRYEY  299 (347)
T ss_dssp             CCBCCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSCBTTCCHHHH
T ss_pred             hhhcccccccccccccccccCccEEEEECCCCEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHHhcCCccccccch
Confidence            3556788999999998887766  7888999999999999986532100000000  0000    00112222222    


Q ss_pred             CCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcC
Q 017664          260 ENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMG  305 (368)
Q Consensus       260 ~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g  305 (368)
                      +.+++ +.++||++||+++...+..++.|..+|+.+|+.|++.++.
T Consensus       300 ~~~~~-~~~~v~~~GD~~~~~~~~~~~gA~~sG~~aA~~l~~~~~~  344 (347)
T d1b5qa1         300 DQLRA-PVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQK  344 (347)
T ss_dssp             HHHHC-CBTTEEECSGGGCSSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhccc-ccCCEEEEEccccCcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence            23455 5789999999987655557788999999999999988754

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.1e-13  Score=124.50  Aligned_cols=119  Identities=15%  Similarity=0.070  Sum_probs=74.4

Q ss_pred             HHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCCCchhh--------hccccccccCCCC
Q 017664          185 SQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMASSWL--------RETILKDSLDGRG  254 (368)
Q Consensus       185 ~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~--------~~~~l~~~~~~~g  254 (368)
                      .....+.+++.|+++++++.|.+|..+++  .+++.||+++++|.+|+|++...-..+.        ....+. .....+
T Consensus       210 ~~~~~~l~~~~g~~i~~~~~v~~I~~~~~~v~v~~~~g~~~~ad~vI~a~p~~~~~~~~~~p~l~~~~~~~~~-~~~~~~  288 (383)
T d2v5za1         210 GQVSERIMDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMIT-RVFPPG  288 (383)
T ss_dssp             HHHHHHHHHHHGGGEEESCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTT-SCCCTT
T ss_pred             hHHHHHHHHHcCCeEEecCcceEEEecCCeEEEEECCCCEEECCEEEECCCHHHHhhCccCCCCCHHHHHHHH-HhccCC
Confidence            34455566788999999999999988766  7889999999999999997642111100        000000 000111


Q ss_pred             cE-EeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcC
Q 017664          255 RL-MVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMG  305 (368)
Q Consensus       255 ~i-~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g  305 (368)
                      .. .....+.. ...+++.+|+............|+.+|+.+|+.|+..+..
T Consensus       289 ~~~~~~~~~~~-~~~~~~~~G~~~~~~~~g~~~ga~~~g~~~a~~i~~~~~~  339 (383)
T d2v5za1         289 ILTQYGRVLRQ-PVDRIYFAGTETATHWSGYMEGAVEAGERAAREILHAMGK  339 (383)
T ss_dssp             HHHHHGGGTTC-CBTTEEECSGGGCSSSTTSHHHHHHHHHHHHHHHHHHTTS
T ss_pred             ccchhhhhhcC-CcCceEeccccccccCCcchHHHHHHHHHHHHHHHHHhcc
Confidence            11 11112222 3567999998654433334566899999999999887643

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.35  E-value=3.4e-14  Score=125.18  Aligned_cols=114  Identities=12%  Similarity=-0.007  Sum_probs=69.1

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEc-CCC--cEEecCEEEEccCCCCCchhhhcccccc-----ccCC
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISDG--LIET-SSG--ETIDTDCHFMCTGKAMASSWLRETILKD-----SLDG  252 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~-~~g--~~i~~d~vi~a~G~~p~~~~~~~~~l~~-----~~~~  252 (368)
                      .+.....+..++.|++++++++|++|+.+++  .+.. .++  +++++|.||+|+|......++.+..-..     ....
T Consensus       220 g~~~~~~~l~~~~g~~i~~~~~V~~I~~~~~~~~v~~~~~~~~~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~  299 (347)
T d2ivda1         220 GLQVLIDALAASLGDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIYN  299 (347)
T ss_dssp             CTHHHHHHHHHHHGGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHHHHHHHHTTTCHHHHHHHHTCCB
T ss_pred             chHHHHHHHHHHhhcccccCCEEEEEEEeCCeEEEEEEcCCeEEEEECCEEEECCCHHHHHHhccCCCHHHHHHhhccee
Confidence            3445555556667899999999999988765  4433 333  4799999999987532223332211000     1111


Q ss_pred             CCcE---EeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHH
Q 017664          253 RGRL---MVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLK  300 (368)
Q Consensus       253 ~g~i---~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~  300 (368)
                      .|..   ...+...+ +.|++|++||......   ...+.++|+.+|+.|.
T Consensus       300 ~~~~~~~~~~~~~~~-~~p~~~~~G~~~~g~~---~~~~~~~g~~~a~~~~  346 (347)
T d2ivda1         300 LGHLERVAAIDAALQ-RLPGLHLIGNAYKGVG---LNDCIRNAAQLADALV  346 (347)
T ss_dssp             TTHHHHHHHHHHHHH-TSTTEEECSTTTSCCS---HHHHHHHHHHHHHHHC
T ss_pred             cCcccceeccccccc-CCCCEEEecccccCCC---HHHHHHHHHHHHHHhh
Confidence            1211   11112223 6899999999876543   4568899999999874

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.28  E-value=2.4e-12  Score=112.50  Aligned_cols=120  Identities=14%  Similarity=0.135  Sum_probs=75.5

Q ss_pred             hhHHHHHHHHHcCCc--EEEecceeeecccCC--C--eEEcCCCcEEecCEEEEccCCC--CCchhhhccc-cc---ccc
Q 017664          183 RASQIALDWLTSKKV--EVILNQSVTLNTISD--G--LIETSSGETIDTDCHFMCTGKA--MASSWLRETI-LK---DSL  250 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv--~i~~~~~v~~i~~~~--~--~v~~~~g~~i~~d~vi~a~G~~--p~~~~~~~~~-l~---~~~  250 (368)
                      ++.+++++.+++.++  .|+++++|++++.++  +  .|.+.+++++++|.+|.|+|..  |..+.+.... .+   ..+
T Consensus        86 e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~~~p~~~~~~i~g~~g~~l  165 (298)
T d1w4xa1          86 EILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTGALFKIDIRGVGNVAL  165 (298)
T ss_dssp             HHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCTTHHHHTSEEECGGGCBH
T ss_pred             hHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccccccCCcccccccccCCCeee
Confidence            567778888888888  589999999887433  3  8999999999999999999963  3322221111 00   001


Q ss_pred             C---CCCcEEeCCCeeecCCCCeEEecccCCC-CccchHHHHHHHHHHHHHHHHHHH
Q 017664          251 D---GRGRLMVDENLRVRGFKNVFAIGDITDI-PEIKQGYLAQKHALVTAKNLKKLM  303 (368)
Q Consensus       251 ~---~~g~i~vd~~~~~~~~~~ifa~GD~~~~-~~~~~~~~a~~~g~~aa~~i~~~l  303 (368)
                      .   .+| +..---+.+.+.||.|.++-..+. ........+..|+..+++.|....
T Consensus       166 ~~~W~~~-p~ty~G~~v~gfPN~f~~~Gp~s~~~~~~~~~~~e~q~~~i~~~i~~~~  221 (298)
T d1w4xa1         166 KEKWAAG-PRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIAYMF  221 (298)
T ss_dssp             HHHTTTS-CCCBTTTBCTTSTTEEESSCTTSSGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhchhh-HHHHHHHhcCCCCeEEEecCCCCccccccHHHHHHHHHHHHHHHHHHHH
Confidence            0   111 112223556689999997543332 222244567788888888776544

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.27  E-value=5.5e-11  Score=103.00  Aligned_cols=63  Identities=21%  Similarity=0.197  Sum_probs=52.0

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCCCchhhhcccc
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMASSWLRETIL  246 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l  246 (368)
                      ..+...+.+.+++.|++++++++|.+++.+++  .|.+++| ++.||.||+|+|.. ...++...++
T Consensus       150 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~V~t~~g-~i~a~~VViAaG~~-s~~l~~~lg~  214 (281)
T d2gf3a1         150 ENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAW-NSKLLSKLNL  214 (281)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGG-HHHHGGGGTE
T ss_pred             cccccccccccccccccccCCcEEEEEEEECCEEEEEECCc-EEEcCEEEECCCCc-chhhHHhcCC
Confidence            46677888899999999999999999988776  7888888 69999999999966 3456665555

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.26  E-value=4.8e-12  Score=108.04  Aligned_cols=43  Identities=19%  Similarity=0.276  Sum_probs=38.9

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeec
Q 017664           12 GLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITW   54 (368)
Q Consensus        12 ~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~   54 (368)
                      .|.+.+||||||||++||+||..|+ +|++|+|+|+++.+|+..
T Consensus         1 ~m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~~   44 (297)
T d2bcgg1           1 TIDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEA   44 (297)
T ss_dssp             CCCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGG
T ss_pred             CCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCcce
Confidence            4788999999999999999999997 599999999999987654

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.25  E-value=8.8e-12  Score=106.93  Aligned_cols=59  Identities=22%  Similarity=0.353  Sum_probs=41.3

Q ss_pred             CCcEEecCEEEEccCCCC-----CchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCC
Q 017664          219 SGETIDTDCHFMCTGKAM-----ASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDI  279 (368)
Q Consensus       219 ~g~~i~~d~vi~a~G~~p-----~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~  279 (368)
                      +++++++|.+|+|||.+|     +.+.+..+...+ .+.++++.+|+..++ ...++|++||++..
T Consensus       135 ~~~~i~a~~iiIATGs~P~~~~~~~~~~~l~~~~i-~ts~~~~~~d~~~~t-~Vig~gaiGdv~~~  198 (259)
T d1onfa1         135 NEEILEGRNILIAVGNKPVGRSPDTENLKLEKLNV-ETNNNYIVVDENQRT-SVNNIYAVGDCCMV  198 (259)
T ss_dssp             -----CBSSEEECCCCCBCCBCCTTTTSSCTTTTC-CBSSSCEEECTTCBC-SSSSEEECSTTEEE
T ss_pred             ceEEEeeeeEEEecCCCCcccccccccccccccee-eecccccccccCCce-eEeeEEEEEEeeeh
Confidence            345799999999999998     344443333333 345788999998888 79999999999754

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.24  E-value=1.6e-11  Score=108.83  Aligned_cols=39  Identities=28%  Similarity=0.327  Sum_probs=34.1

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceee
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEI   52 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~   52 (368)
                      .+.+||||||+|+|||+||..|+ +|++|+||||.+..+.
T Consensus        21 ~et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG   60 (322)
T d1d4ca2          21 KETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGG   60 (322)
T ss_dssp             CEECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCT
T ss_pred             CCcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence            34689999999999999999997 5999999999987653

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.23  E-value=3.9e-12  Score=100.37  Aligned_cols=133  Identities=12%  Similarity=-0.006  Sum_probs=96.9

Q ss_pred             EecCCCCC----CCCchH--HHHHHHHHHHHHHhcCC-eEEEE--cCchhHHHHHHHHhhhCCCCeEEEEecCccccccc
Q 017664          110 VATGHVES----VPKSRT--ERLSQYEKDFEKVKSAN-SVLIV--GGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFV  180 (368)
Q Consensus       110 lAtG~~~~----~p~~~~--~~~~~~~~~~~~~~~~~-~v~Vv--G~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~  180 (368)
                      -|||+.|.    +|+.+.  .++.+..+.+......+ .++|+  |+|++|+|+|..|++  .|.+|+++++.+.+++.+
T Consensus         3 ~atG~~~~~~~pipG~~~~~~~v~t~~d~l~~~~~~~~~vvi~d~ggg~ig~e~A~~la~--~G~~Vtlv~~~~~~~~~~   80 (156)
T d1djqa2           3 NTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLAT--AGHEVTIVSGVHLANYMH   80 (156)
T ss_dssp             CSSCCCTTTSSCCTTCCTTSTTEECHHHHHHTCSCCCSEEEEEECCCSSHHHHHHHHHHH--TTCEEEEEESSCTTTHHH
T ss_pred             cCCCCCCCCCCCCCCccCCCCEEECHHHHhcCccccCCceEEEecCCChHHHHHHHHHHH--cCCeEEEEecCCcccccc
Confidence            37998854    555543  23445555554443444 44554  999999999999996  589999999999988888


Q ss_pred             CchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCCcEEecCEEEEccCCCCCchhhhcccc
Q 017664          181 GSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETIL  246 (368)
Q Consensus       181 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l  246 (368)
                      ++.....+.+.|+++||++++++.+.+++.+  .+.+.+....+++.++.++|..|+........+
T Consensus        81 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~--~v~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~l  144 (156)
T d1djqa2          81 FTLEYPNMMRRLHELHVEELGDHFCSRIEPG--RMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWI  144 (156)
T ss_dssp             HTTCHHHHHHHHHHTTCEEEETEEEEEEETT--EEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEE
T ss_pred             chhHHHHHHHHHhhccceEEeccEEEEecCc--ceEEEeeeccccceeeeeeEEEecccCCccCcE
Confidence            8899999999999999999999999988754  343333334456777777777776655554443

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.21  E-value=1e-11  Score=100.39  Aligned_cols=106  Identities=29%  Similarity=0.323  Sum_probs=70.0

Q ss_pred             CCcEEEECCChHHHHHHHHhhc---CCcEEEEcCCCceeeeccceeeeecccccccceeeccc-ccCceeEEEeEEEEee
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGD-YLSNVKIVVSTAVSIT   91 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   91 (368)
                      .++|||||||++|+.+|.+|++   ..+|+|+|+++.+...+..................... ....+.+........+
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   81 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSATGID   81 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCCEEECC
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeeeeEeee
Confidence            3689999999999999999974   46899999998765443221111111111111111111 1125666666666665


Q ss_pred             c--cEEEecCCeEEEecEEEEecCCCCCCCCc
Q 017664           92 D--TEVVTAGGQTFVYDYVVVATGHVESVPKS  121 (368)
Q Consensus        92 ~--~~v~~~~g~~~~~d~lvlAtG~~~~~p~~  121 (368)
                      .  ..+.+.+++.++||+|++|||..|..+.+
T Consensus        82 ~~~~~~~~~~~~~i~~D~li~atG~~~~~~~i  113 (186)
T d1fcda1          82 PDKKLVKTAGGAEFGYDRCVVAPGIELIYDKI  113 (186)
T ss_dssp             TTTTEEEETTSCEEECSEEEECCCEEECCTTS
T ss_pred             eccceeecccceeeccceEEEEeccccchhhh
Confidence            4  37788889999999999999999766554

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.17  E-value=6.7e-11  Score=102.12  Aligned_cols=63  Identities=13%  Similarity=0.098  Sum_probs=51.2

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCCCchhhhcccc
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMASSWLRETIL  246 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l  246 (368)
                      ..+...+.+.++++|++++.+++|+.++.+++  .|++++| ++.||.||+|+|.. ...+++..++
T Consensus       151 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~vV~AaG~~-s~~l~~~~G~  215 (276)
T d1ryia1         151 YFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVW-SGMFFKQLGL  215 (276)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGG-THHHHHHTTC
T ss_pred             ccchhHHHHHHHHcCCEEecceEEEeEEeecceEEEecCCe-EEEcCEEEECCCcc-HHHHHhhcCC
Confidence            35667778889999999999999999987655  7888887 69999999999976 3456666665

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.17  E-value=1.1e-10  Score=95.44  Aligned_cols=159  Identities=14%  Similarity=0.174  Sum_probs=107.5

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCC-eEEEEecCccccc---------ccCchhHHHHHHHHHcCCcEEEecceeee
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDK-KVILVHRGPKLLE---------FVGSRASQIALDWLTSKKVEVILNQSVTL  207 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~-~v~~i~~~~~~l~---------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~  207 (368)
                      .++||+|||+|++|+++|..|.+  .|. +|+++++++.+..         ...............+.+..++....+..
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~--~G~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   80 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLAR--LGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSE   80 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHH--TTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBST
T ss_pred             CCCEEEEECChHHHHHHHHHHHH--CCCCeEEEEEecCcccchhhhhccccccccccccchhhhhhccceeEEeeEEecc
Confidence            47999999999999999999986  355 6999999887543         12233344555566778888888776642


Q ss_pred             cccCCCeEEcCCCcEEecCEEEEccCCCCCch--hhhccccccccCCCCcEEeCC-CeeecCCCCeEEecccCCCCccch
Q 017664          208 NTISDGLIETSSGETIDTDCHFMCTGKAMASS--WLRETILKDSLDGRGRLMVDE-NLRVRGFKNVFAIGDITDIPEIKQ  284 (368)
Q Consensus       208 i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~--~~~~~~l~~~~~~~g~i~vd~-~~~~~~~~~ifa~GD~~~~~~~~~  284 (368)
                      ...     ...+..+..+|.+++++|..+...  ..............+....+. .+++ +.+.+|+.||+++.+.  +
T Consensus        81 ~~~-----~~~~~~~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~g~vigg~~--~  152 (196)
T d1gtea4          81 NEI-----TLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPETMQT-SEPWVFAGGDIVGMAN--T  152 (196)
T ss_dssp             TSB-----CHHHHHHTTCCEEEECCCCCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBC-SSTTEEECSGGGCSCC--C
T ss_pred             cee-----eeehhhccccceeeEEeccccCCccccccccccccccccccceeccccccCC-CcccccccccccCCcc--h
Confidence            211     112223455889999999653322  221111111233445555555 4666 7999999999987654  7


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCC
Q 017664          285 GYLAQKHALVTAKNLKKLMMGR  306 (368)
Q Consensus       285 ~~~a~~~g~~aa~~i~~~l~g~  306 (368)
                      +..|..+|+.+|..+.+++.+.
T Consensus       153 av~a~~~g~~~a~~v~r~~~~~  174 (196)
T d1gtea4         153 TVESVNDGKQASWYIHKYIQAQ  174 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhehhHhhccHhh
Confidence            8889999999999998877654

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=4.3e-10  Score=84.57  Aligned_cols=104  Identities=19%  Similarity=0.179  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEeccee
Q 017664          126 LSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSV  205 (368)
Q Consensus       126 ~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v  205 (368)
                      +..+......++++++|+|||+|++|+|.|..|++  ...+|++++|++.+  ..++.+.+.+.+..+..++.+++++.+
T Consensus        14 V~yca~cD~~~~~~k~V~VvGgGdsA~e~A~~L~~--~a~~V~li~r~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~v   89 (126)
T d1trba2          14 VSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSN--IASEVHLIHRRDGF--RAEKILIKRLMDKVENGNIILHTNRTL   89 (126)
T ss_dssp             EESCHHHHGGGGTTSEEEEECSSHHHHHHHHHHTT--TSSEEEEECSSSSC--CCCHHHHHHHHHHHHTSSEEEECSCEE
T ss_pred             EEEEEecchHHhCCCEEEEECCCHHHHHHHHHHhh--cCCcEEEEeecccc--cchhHHHHHHHHhhcccceeEecceEE
Confidence            33344445567789999999999999999999985  57899999999875  345667777888888899999999999


Q ss_pred             eecccCCC---eEEcCCC------cEEecCEEEEccC
Q 017664          206 TLNTISDG---LIETSSG------ETIDTDCHFMCTG  233 (368)
Q Consensus       206 ~~i~~~~~---~v~~~~g------~~i~~d~vi~a~G  233 (368)
                      .++..++.   .+++.|.      +++++|.++++.|
T Consensus        90 ~~i~G~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          90 EEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             EEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred             EEEECCCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence            99988764   4544332      4699999999887

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.09  E-value=1.6e-09  Score=97.71  Aligned_cols=83  Identities=13%  Similarity=0.155  Sum_probs=52.0

Q ss_pred             EEecCEEEEccCCCCCc--hhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCcc---chHHHHHHHHHHHH
Q 017664          222 TIDTDCHFMCTGKAMAS--SWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEI---KQGYLAQKHALVTA  296 (368)
Q Consensus       222 ~i~~d~vi~a~G~~p~~--~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~---~~~~~a~~~g~~aa  296 (368)
                      ...++..+++.|.+...  +++....+.......+.+.-   +.....+++..+||+++.-.+   +-.+.|+.+|+.||
T Consensus       200 ~~~~~~~v~~~G~~G~l~k~li~~~~l~~~~~~~~G~~s---ip~l~~~G~lLVGDAAG~vnP~~g~GI~~Am~SG~lAA  276 (380)
T d2gmha1         200 ELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQGGFQS---IPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAA  276 (380)
T ss_dssp             EEECSEEEECCCTTCHHHHHHHHHTTTTTTSCCCCGGGG---CCCCEETTEEECTTTTCCCBTTTTBCHHHHHHHHHHHH
T ss_pred             cccccEEEEeeeCCCcchHHHHhhhhhcccccccccccc---ccccccCCeeEEeccccccchhhcCCeeeeeccHHHHH
Confidence            56688889999876432  23332222222222221110   111136899999999987443   34678999999999


Q ss_pred             HHHHHHHcCCC
Q 017664          297 KNLKKLMMGRN  307 (368)
Q Consensus       297 ~~i~~~l~g~~  307 (368)
                      +.|...|...+
T Consensus       277 eai~~al~~~~  287 (380)
T d2gmha1         277 ESIFNQLTSEN  287 (380)
T ss_dssp             HHHHHHHTCCC
T ss_pred             HHHHHHHHcCC
Confidence            99999886543

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.07  E-value=2.9e-09  Score=93.63  Aligned_cols=39  Identities=26%  Similarity=0.412  Sum_probs=34.6

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCcee
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFE   51 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~   51 (368)
                      +.+.+||||||||++||+||+.|+ +|.+|+||||.+..+
T Consensus        16 ~~e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~g   55 (317)
T d1qo8a2          16 PSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSG   55 (317)
T ss_dssp             CSEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSC
T ss_pred             CCCccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            445789999999999999999997 599999999998665

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=3e-10  Score=94.04  Aligned_cols=108  Identities=18%  Similarity=0.211  Sum_probs=69.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhc---CCcEEEEcCCCceeeeccceeeee---------------c-ccccccceeecc
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYFEITWASLRAVV---------------E-PSFAVRSVINHG   74 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~~~~~~~~~~~~~---------------~-~~~~~~~~~~~~   74 (368)
                      +.++++||||||++|+.+|..|++   ..+|++|++++.+.+....+....               . ............
T Consensus         2 p~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (213)
T d1m6ia1           2 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPP   81 (213)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCG
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCCh
Confidence            456789999999999999999974   457999999887654322211000               0 000000000000


Q ss_pred             c---------c--cCceeEEEe-EEEEeec--cEEEecCCeEEEecEEEEecCCCCCCCCc
Q 017664           75 D---------Y--LSNVKIVVS-TAVSITD--TEVVTAGGQTFVYDYVVVATGHVESVPKS  121 (368)
Q Consensus        75 ~---------~--~~~~~~~~~-~~~~~~~--~~v~~~~g~~~~~d~lvlAtG~~~~~p~~  121 (368)
                      +         .  ..++++... ++..++.  ++|.+++|+++.||+||+|+|..|..+.+
T Consensus        82 ~~~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~~d~lViAtG~~~~~~~l  142 (213)
T d1m6ia1          82 SFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTEPNVEL  142 (213)
T ss_dssp             GGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEEECCTT
T ss_pred             hhhhhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccceeeccceEEEeeeeecchhhh
Confidence            0         0  125666554 5777764  48999999999999999999988655443

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.03  E-value=3.8e-10  Score=100.25  Aligned_cols=118  Identities=13%  Similarity=0.048  Sum_probs=77.5

Q ss_pred             hhHHHHHHHHHcCCcEEEecceeeecccCCC---eE---EcCCCc--EEecCEEEEccCCCCCc------------h---
Q 017664          183 RASQIALDWLTSKKVEVILNQSVTLNTISDG---LI---ETSSGE--TIDTDCHFMCTGKAMAS------------S---  239 (368)
Q Consensus       183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v---~~~~g~--~i~~d~vi~a~G~~p~~------------~---  239 (368)
                      .+...+.+.+++.|++++.++.+.++..+++   .+   ...+|+  .+.++.||+|||--...            +   
T Consensus       159 ~i~~~l~~~~~~~gv~i~~~~~~~~li~~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~tGdg~~  238 (336)
T d2bs2a2         159 TMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTA  238 (336)
T ss_dssp             HHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCHHHH
T ss_pred             HHHHHHHHHHHhccccccceeeeeecccccccccceeEEeccCCcEEEEecCeEEEeccccccccccccccccccchhhh
Confidence            4566677888899999999999987766665   12   235665  57899999999843210            0   


Q ss_pred             hhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCc-------cchHHHHHHHHHHHHHHHHHH
Q 017664          240 WLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPE-------IKQGYLAQKHALVTAKNLKKL  302 (368)
Q Consensus       240 ~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~-------~~~~~~a~~~g~~aa~~i~~~  302 (368)
                      .....++ ..+..-+++.+|+..++ +.|++|++|+++....       ......+...+..+++.+..+
T Consensus       239 ~~~~~G~-~~l~~~~~iq~~~~~~t-~~~gl~a~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~ge~~~~~  306 (336)
T d2bs2a2         239 IALETGI-AQLGNMGGIRTDYRGEA-KLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEH  306 (336)
T ss_dssp             HHHTTSS-SCEECCCEEECCTTSBC-SSBTEEECGGGEECCSSTTCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhh-hhhccccceeechhhcc-cCCcceeccccccccccccccchhhccchhhhhcchhHHHHHhh
Confidence            1011111 12345678999999999 7999999999754311       123445666666677666543

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.03  E-value=5.2e-10  Score=97.88  Aligned_cols=66  Identities=23%  Similarity=0.158  Sum_probs=52.7

Q ss_pred             CchhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCCCCCchhhhcccccc
Q 017664          181 GSRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGKAMASSWLRETILKD  248 (368)
Q Consensus       181 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~  248 (368)
                      +..+...+.+.+++.|++++.+++|++++.+++   .|.+++| +++||.||+|+|.. ..++++..++.+
T Consensus       147 p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~~g-~i~a~~VV~aaG~~-s~~l~~~~g~~l  215 (305)
T d1pj5a2         147 AARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFW-GAKIGAMIGMAV  215 (305)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGG-HHHHHHTTTCCC
T ss_pred             hhhhhhhHHhhhhcccccccCCceEEEEEEeCCEEEEEeccce-eEECCEEEEecchh-HHHHHHHcCCcc
Confidence            346677788888999999999999999988777   4778887 69999999999976 345666555543

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=3.5e-10  Score=85.03  Aligned_cols=104  Identities=28%  Similarity=0.318  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHH-cCCcEEEe
Q 017664          123 TERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLT-SKKVEVIL  201 (368)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~-~~gv~i~~  201 (368)
                      +..+..+......++++++|+|+|+|++|+|.|..|++  ...+|++++|++.+-      ....+.+.++ ..+|++++
T Consensus        14 gkGV~yca~cD~~~~~gk~V~VvGgG~sA~~~A~~L~~--~a~~V~li~r~~~~~------~~~~~~~~~~~~~~I~v~~   85 (126)
T d1fl2a2          14 TKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAG--IVEHVTLLEFAPEMK------ADQVLQDKLRSLKNVDIIL   85 (126)
T ss_dssp             TTTEESCHHHHGGGGBTCEEEEECCSHHHHHHHHHHHT--TBSEEEEECSSSSCC------SCHHHHHHHHTCTTEEEES
T ss_pred             CCCEEEEEecChhhcCCceEEEEeCCHHHHHHHHhhhc--cCCceEEEecccccc------cccccccccccccceeEEc
Confidence            34455555555677899999999999999999999995  478999999998652      2233444444 46799999


Q ss_pred             cceeeecccCCC---eEEcC---CC--cEEecCEEEEccCC
Q 017664          202 NQSVTLNTISDG---LIETS---SG--ETIDTDCHFMCTGK  234 (368)
Q Consensus       202 ~~~v~~i~~~~~---~v~~~---~g--~~i~~d~vi~a~G~  234 (368)
                      ++.+.++..+++   .+++.   +|  +++++|.++++.|.
T Consensus        86 ~~~v~~i~G~~~~v~~v~l~~~~tge~~~l~vdgvFv~IGl  126 (126)
T d1fl2a2          86 NAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGL  126 (126)
T ss_dssp             SEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred             CcceEEEEccccceeeEEEEECCCCCEEEEECCEEEEEeCC
Confidence            999999988754   34442   34  47999999999883

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.03  E-value=1.6e-10  Score=95.33  Aligned_cols=100  Identities=19%  Similarity=0.217  Sum_probs=64.7

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCC-ceeeeccc----------eeeeeccccc-----ccceeecccccC
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKE-YFEITWAS----------LRAVVEPSFA-----VRSVINHGDYLS   78 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~-~~~~~~~~----------~~~~~~~~~~-----~~~~~~~~~~~~   78 (368)
                      .||||||||||||+.||.++++ |.+++||+++. ..+.....          +....+..-+     ........+...
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~   81 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLR   81 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCT
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhc
Confidence            5899999999999999998874 99999999873 22211110          0000110000     000011111234


Q ss_pred             ceeEEEeEEEEee--cc---EEEecCCeEEEecEEEEecCCC
Q 017664           79 NVKIVVSTAVSIT--DT---EVVTAGGQTFVYDYVVVATGHV  115 (368)
Q Consensus        79 ~~~~~~~~~~~~~--~~---~v~~~~g~~~~~d~lvlAtG~~  115 (368)
                      +..+++.++.++.  .+   .|.+.+|..+.++.|||+||..
T Consensus        82 nL~i~q~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTF  123 (230)
T d2cula1          82 PLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSF  123 (230)
T ss_dssp             TEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred             CHHHHhccceeeEecccceeeEEeccccEEEEeEEEEccCcc
Confidence            7788888887774  22   4678899999999999999987

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.03  E-value=1.3e-10  Score=103.32  Aligned_cols=42  Identities=24%  Similarity=0.392  Sum_probs=36.0

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhhc-C--CcEEEEcCCCceeeec
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQS-F--ADVVLIDEKEYFEITW   54 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~~-g--~~v~lie~~~~~~~~~   54 (368)
                      |+..++|+|||||+|||+||+.|++ +  .+|+|+||++.+|+.|
T Consensus         1 m~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W   45 (335)
T d2gv8a1           1 LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVW   45 (335)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTC
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcc
Confidence            5667899999999999999999863 3  6999999999887554

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.03  E-value=1.2e-09  Score=95.60  Aligned_cols=39  Identities=31%  Similarity=0.330  Sum_probs=34.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceee
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEI   52 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~   52 (368)
                      .+.+||||||||++|+++|..|+ +|.+|+||||++..+.
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG   53 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGG   53 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence            45789999999999999999998 5999999999987653

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=2.4e-10  Score=90.43  Aligned_cols=117  Identities=18%  Similarity=0.233  Sum_probs=80.3

Q ss_pred             CCCCCchHHHHHHHHHHHH-HHhcCCeEEEEcCchhHHHHHHHHhhhCCCC-----------------------------
Q 017664          116 ESVPKSRTERLSQYEKDFE-KVKSANSVLIVGGGPTGVELAGEIAVDFPDK-----------------------------  165 (368)
Q Consensus       116 ~~~p~~~~~~~~~~~~~~~-~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~-----------------------------  165 (368)
                      |.+|+.+..++.+..++++ ....+++++|||+|++|+|+|..+.+.  +.                             
T Consensus         5 p~IpG~d~~~V~~a~d~L~~~~~~gkrVvVIGgG~~g~d~a~~~~r~--G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (162)
T d1ps9a2           5 PPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQP--GESTSQNIAGFCNEWGIDSSLQQAGGLSPQG   82 (162)
T ss_dssp             CCCBTTTSTTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCC--SSCGGGCHHHHHHHTTBCTTCCSGGGBCTTC
T ss_pred             CCCCCCCCCCeEEHHHHhhCccccCCceEEEcCchhHHHHHHHHHHc--CCccceeHhhhhhhccCCcchhhhccccccc
Confidence            5567766666655544433 334589999999999999999998852  22                             


Q ss_pred             --------eEEEEecC-cccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCC-cEEecCEEEEccCC
Q 017664          166 --------KVILVHRG-PKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSG-ETIDTDCHFMCTGK  234 (368)
Q Consensus       166 --------~v~~i~~~-~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g-~~i~~d~vi~a~G~  234 (368)
                              +++.+... ..+...............++..|+++++++.+.++..+.-.+..++. ++++||.||+|+|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~gv~~~~~g~e~~i~aD~Vv~A~Gq  161 (162)
T d1ps9a2          83 MQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAGQ  161 (162)
T ss_dssp             CCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECCCE
T ss_pred             ceeccccceEEEEEeccchhccccchhhhHHHHHHHhhCCeEEEeeeEEEEEcCCCCEEecCCeEEEEECCEEEECCCC
Confidence                    23444332 22333455666777888999999999999999987643223333322 36899999999994

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.00  E-value=4.1e-10  Score=84.10  Aligned_cols=91  Identities=22%  Similarity=0.303  Sum_probs=63.9

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeec
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITD   92 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   92 (368)
                      ...+++|||||+.|+-+|..|+ +|.+|+++|+++.+...      ...+...........  ..+++++.. .+..+..
T Consensus        29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~------~~~~~~~~~~~~~l~--~~GV~i~~~~~v~~~~~  100 (121)
T d1d7ya2          29 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR------AAPATLADFVARYHA--AQGVDLRFERSVTGSVD  100 (121)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT------TSCHHHHHHHHHHHH--TTTCEEEESCCEEEEET
T ss_pred             cCCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccc------cCCHHHHHHHHHHHH--HCCcEEEeCCEEEEEeC
Confidence            3578999999999999999998 59999999999864211      111111110000111  126777544 4566777


Q ss_pred             cEEEecCCeEEEecEEEEecC
Q 017664           93 TEVVTAGGQTFVYDYVVVATG  113 (368)
Q Consensus        93 ~~v~~~~g~~~~~d~lvlAtG  113 (368)
                      ..+.+.||+.+++|.+++|+|
T Consensus       101 ~~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2         101 GVVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             TEEEETTSCEEECSEEEECSC
T ss_pred             CEEEECCCCEEECCEEEEeeC
Confidence            788999999999999999998

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.92  E-value=6.2e-10  Score=88.37  Aligned_cols=99  Identities=25%  Similarity=0.316  Sum_probs=64.2

Q ss_pred             cEEEECCChHHHHHHHHhhcCCcEEEEcCCCceeeeccceeeeecccccccceee-ccccc--CceeEEE-eEEEEeecc
Q 017664           18 KVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVIN-HGDYL--SNVKIVV-STAVSITDT   93 (368)
Q Consensus        18 ~vvIIGaG~aGl~aA~~L~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~-~~~~~~~~~   93 (368)
                      +|+|||||++|+.+|..|+++.+|+|+++++...+....+............... ..+++  .+++++. ..+..++..
T Consensus         2 rVvIIGgG~~G~e~A~~l~~~~~Vtvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~   81 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQTYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLIDRG   81 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTSEEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEEETT
T ss_pred             eEEEECCcHHHHHHHHHHHcCCCEEEEeccccccccccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeeccccccccc
Confidence            7999999999999999999899999999988655443332222222111111111 11111  1455543 345666643


Q ss_pred             -EEEecCCeEEEecEEEEecCCCC
Q 017664           94 -EVVTAGGQTFVYDYVVVATGHVE  116 (368)
Q Consensus        94 -~v~~~~g~~~~~d~lvlAtG~~~  116 (368)
                       .+...++.++.||++++|+|..|
T Consensus        82 ~~~~~~~~~~i~~D~li~a~G~~~  105 (167)
T d1xhca1          82 RKVVITEKGEVPYDTLVLATGAPN  105 (167)
T ss_dssp             TTEEEESSCEEECSEEEECCCEEC
T ss_pred             cccccccccccccceeEEEEEecC
Confidence             45566777899999999999865

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.89  E-value=2.1e-09  Score=86.59  Aligned_cols=105  Identities=18%  Similarity=0.189  Sum_probs=63.7

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-CCcE--EEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEee
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-FADV--VLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSIT   91 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v--~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   91 (368)
                      +.+|+|||||++|+.+|..|++ |.++  ++++++....+....+.....................+++++.. .+..++
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~   82 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFD   82 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEEE
T ss_pred             CCCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEeccccccc
Confidence            4569999999999999999974 6554  44444443333322222211111111111111111235666544 556665


Q ss_pred             c--cEEEecCCeEEEecEEEEecCCCCCCCC
Q 017664           92 D--TEVVTAGGQTFVYDYVVVATGHVESVPK  120 (368)
Q Consensus        92 ~--~~v~~~~g~~~~~d~lvlAtG~~~~~p~  120 (368)
                      .  ..+.+.+|++++||.+++|+|..|..+.
T Consensus        83 ~~~~~~~~~~g~~~~~D~vi~a~G~~p~~~~  113 (183)
T d1d7ya1          83 PQAHTVALSDGRTLPYGTLVLATGAAPRAVL  113 (183)
T ss_dssp             TTTTEEEETTSCEEECSEEEECCCEEECCEE
T ss_pred             cccceeEecCCcEeeeeeEEEEEEEEccccc
Confidence            4  3788899999999999999999986544

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=8.5e-09  Score=82.02  Aligned_cols=88  Identities=18%  Similarity=0.195  Sum_probs=69.1

Q ss_pred             hcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------c--cCchhHHHHHHHHHcCCcEEEeccee
Q 017664          137 KSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE---------F--VGSRASQIALDWLTSKKVEVILNQSV  205 (368)
Q Consensus       137 ~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~---------~--~~~~~~~~~~~~l~~~gv~i~~~~~v  205 (368)
                      ..+|+|+|||+|++|+++|..+++  .+.+|+++++.+.+..         .  ...++.+.+.+++++.||++++++.|
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~--~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~V  118 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAA--RGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTV  118 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCC
T ss_pred             CCCcEEEEECccHHHHHHHHHHHh--hccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEE
Confidence            357999999999999999999985  5899999999876521         1  12355677888889999999999987


Q ss_pred             eecccCCCeEEcCCCcEEecCEEEEccCCCCCc
Q 017664          206 TLNTISDGLIETSSGETIDTDCHFMCTGKAMAS  238 (368)
Q Consensus       206 ~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~  238 (368)
                      +.           + ....+|.+|+|||..|..
T Consensus       119 t~-----------~-~~~~~d~vilAtG~~~~~  139 (179)
T d1ps9a3         119 TA-----------D-QLQAFDETILASGIPNRA  139 (179)
T ss_dssp             CS-----------S-SSCCSSEEEECCCEECCT
T ss_pred             cc-----------c-ccccceeEEEeecCCCcc
Confidence            52           1 124689999999987654

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=2.5e-09  Score=93.51  Aligned_cols=112  Identities=15%  Similarity=0.160  Sum_probs=69.7

Q ss_pred             HHHHHHcCCcEEEecceeeecccCCC----------eEE---cCCCc--EEecCEEEEccCCCCC-------ch------
Q 017664          188 ALDWLTSKKVEVILNQSVTLNTISDG----------LIE---TSSGE--TIDTDCHFMCTGKAMA-------SS------  239 (368)
Q Consensus       188 ~~~~l~~~gv~i~~~~~v~~i~~~~~----------~v~---~~~g~--~i~~d~vi~a~G~~p~-------~~------  239 (368)
                      +.+.+++.+++++.++.+..+..+++          .+.   ..+++  .+.++.||+|||-...       .+      
T Consensus       144 ~~~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~~~~~~~t~~~~~TGDG  223 (305)
T d1chua2         144 VSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDG  223 (305)
T ss_dssp             HHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGSSSBSCGGGCSCHH
T ss_pred             HHHHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeeccccceeccCCCCceeccc
Confidence            45667888999999999876654432          222   23443  5789999999984321       11      


Q ss_pred             --hhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCC--c---c--chHHHHHHHHHHHHHHHHHH
Q 017664          240 --WLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIP--E---I--KQGYLAQKHALVTAKNLKKL  302 (368)
Q Consensus       240 --~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~--~---~--~~~~~a~~~g~~aa~~i~~~  302 (368)
                        +....  +..+..-+++.+|++.++ +.|++|++|+++...  .   .  ...-...-.++.+.+++.+.
T Consensus       224 ~~mA~~a--Ga~l~~m~~iq~~~~g~t-~~~g~~a~G~~~~~~~~G~~~~~~N~~gerfv~~~~~~~d~~~~  292 (305)
T d1chua2         224 IAMAWRA--GCRVANCGGVMVDDHGRT-DVEGLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAEDITRR  292 (305)
T ss_dssp             HHHHHHT--TCCEECSCEEECCTTCBC-SSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             Eeecccc--ceeeEecceeEECCcccC-CCCCceecccEEEeeecCcCceeEcCCccchhccchhHHHHHHh
Confidence              11122  335566689999999998 799999999964321  1   1  11112223456677777654

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.84  E-value=5.8e-09  Score=78.40  Aligned_cols=102  Identities=19%  Similarity=0.243  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHH--HHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEe
Q 017664          124 ERLSQYEKDFE--KVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVIL  201 (368)
Q Consensus       124 ~~~~~~~~~~~--~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~  201 (368)
                      +.+..+..+..  .++++|+|+|||+|++|+|.|.+|++  ...+|++++|++.+-.  +   .....+..+..+|++++
T Consensus        17 kGVsyca~CDg~a~~frgk~V~VvGgGdsA~e~A~~L~~--~a~~V~li~r~~~~ra--~---~~~~~~l~~~~nI~v~~   89 (130)
T d1vdca2          17 RGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTK--YGSKVYIIHRRDAFRA--S---KIMQQRALSNPKIDVIW   89 (130)
T ss_dssp             TTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTT--TSSEEEEECSSSSCCS--C---HHHHHHHHTCTTEEEEC
T ss_pred             CcEEEEEEecCchHHhCCCEEEEEcCchHHHHHHHHHhC--CCCcEEEEEecccccc--c---hhhhhccccCCceEEEe
Confidence            44544555443  47889999999999999999999985  5789999999987521  2   22233444567799999


Q ss_pred             cceeeecccCCC-----eEEc---CCC--cEEecCEEEEcc
Q 017664          202 NQSVTLNTISDG-----LIET---SSG--ETIDTDCHFMCT  232 (368)
Q Consensus       202 ~~~v~~i~~~~~-----~v~~---~~g--~~i~~d~vi~a~  232 (368)
                      ++.+.++..++.     .+.+   .+|  +++++|.++++.
T Consensus        90 ~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVaI  130 (130)
T d1vdca2          90 NSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAI  130 (130)
T ss_dssp             SEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred             ccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence            999999987643     2332   233  589999999874

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=1.7e-09  Score=80.07  Aligned_cols=89  Identities=17%  Similarity=0.179  Sum_probs=59.6

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeecc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITDT   93 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   93 (368)
                      +.+++|||||+.|+.+|..|+ .|.+|+|+|+.+......       .+...........+  .+++++.. .+..+...
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~~-------d~~~~~~~~~~l~~--~GV~~~~~~~v~~i~~~   91 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSF-------DPMISETLVEVMNA--EGPQLHTNAIPKAVVKN   91 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTS-------CHHHHHHHHHHHHH--HSCEEECSCCEEEEEEC
T ss_pred             CCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhhc-------chhhHHHHHHHHHH--CCCEEEeCCEEEEEEEc
Confidence            468999999999999999998 499999999998653111       11111111111111  25666544 33344321


Q ss_pred             -----EEEecCCeEEEecEEEEecC
Q 017664           94 -----EVVTAGGQTFVYDYVVVATG  113 (368)
Q Consensus        94 -----~v~~~~g~~~~~d~lvlAtG  113 (368)
                           ++.+++|+++++|.+++|+|
T Consensus        92 ~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          92 TDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             TTSCEEEEETTSCEEEESEEEECSC
T ss_pred             CCcEEEEEECCCCEEEcCEEEEecC
Confidence                 57788999999999999998

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.81  E-value=7.7e-12  Score=105.73  Aligned_cols=175  Identities=13%  Similarity=0.140  Sum_probs=88.6

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-C-------CcEEEEcCCCceeeeccceeeeecccccc-cc-eeeccc--ccCceeEE
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-F-------ADVVLIDEKEYFEITWASLRAVVEPSFAV-RS-VINHGD--YLSNVKIV   83 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g-------~~v~lie~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~--~~~~~~~~   83 (368)
                      +++|+|||||||||+||++|.+ |       ++|+|+|+.+..|+.+.   ....+.... .. ......  ...++++.
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~---~gi~p~~~~~~~~~~~~~~~~~~~g~~~~   78 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR---SGVAPDHPKIKSISKQFEKTAEDPRFRFF   78 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH---HTSCTTCTGGGGGHHHHHHHHTSTTEEEE
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeee---eccCcccccchhhhhhhhhhhccCCceEE
Confidence            4699999999999999999963 4       68999999999886442   111111110 00 001111  11244444


Q ss_pred             EeEEEEeeccEEEecCCeEEEecEEEEecCCCC---CCCCchHHHHH-------------HHHHHHHHHhcCCeEEEEcC
Q 017664           84 VSTAVSITDTEVVTAGGQTFVYDYVVVATGHVE---SVPKSRTERLS-------------QYEKDFEKVKSANSVLIVGG  147 (368)
Q Consensus        84 ~~~~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~---~~p~~~~~~~~-------------~~~~~~~~~~~~~~v~VvG~  147 (368)
                      ....  +... +.. +.....||++++|||..+   ..|+.......             ...........+++++|+|+
T Consensus        79 ~~~~--v~~~-~~~-~~~~~~~~~v~~atGa~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vv~g~  154 (239)
T d1lqta2          79 GNVV--VGEH-VQP-GELSERYDAVIYAVGAQSRGVPTPGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGVIGTN  154 (239)
T ss_dssp             ESCC--BTTT-BCH-HHHHHHSSEEEECCCCCEECCCCTTSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSCSCTTHH
T ss_pred             EEEE--eccc-cch-hhhhccccceeeecCCCccccccccccccccccchhhhhhhhccccccccceeecCCCEEEEeCC
Confidence            3322  1111 000 111235999999999872   22322111000             00000111224678888888


Q ss_pred             chhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecc
Q 017664          148 GPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQ  203 (368)
Q Consensus       148 g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~  203 (368)
                      ++.+++++..+.... +...    ..... ............+.+.++++++.+..
T Consensus       155 g~~a~d~a~~~v~vi-g~g~----~~~~~-~~~~~~~~~~~~~~l~~~~v~~v~~~  204 (239)
T d1lqta2         155 KKDAQDTVDTLIKNL-GNAK----EGAEC-KSFPEDHADQVADWLAARQPKLVTSA  204 (239)
T ss_dssp             HHHHHHHHHHHHHHH-HHHH----HTTCS-CCC--CHHHHHHHHHHHHCTTCEEHH
T ss_pred             CchHHHHHHHHHhhc-cCCc----ccccc-ccccccchhHHHHHHHhcCCCccCcc
Confidence            999999887654211 1000    00000 01122334555666777777776544

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.80  E-value=1.8e-09  Score=87.56  Aligned_cols=104  Identities=13%  Similarity=0.105  Sum_probs=60.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeecc--ceeeeec--ccccccce-eecccc--cCceeEEEe
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWA--SLRAVVE--PSFAVRSV-INHGDY--LSNVKIVVS   85 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~--~~~~~~~--~~~~~~~~-~~~~~~--~~~~~~~~~   85 (368)
                      .+.+||+||||||+||+||.+|++ |.+|+|||+++..+....  .+.....  .......+ ......  ..++.+..+
T Consensus         3 ~k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (190)
T d1trba1           3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD   82 (190)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEecc
Confidence            356799999999999999999985 999999998875432111  0000000  00000000 000000  014455555


Q ss_pred             EEEEeecc---EEEecCCeEEEecEEEEecCCCCC
Q 017664           86 TAVSITDT---EVVTAGGQTFVYDYVVVATGHVES  117 (368)
Q Consensus        86 ~~~~~~~~---~v~~~~g~~~~~d~lvlAtG~~~~  117 (368)
                      .+..++..   .........+..+.+++++|..+.
T Consensus        83 ~V~~~~~~~~~~~v~~~~~~~~~~~viva~G~~~~  117 (190)
T d1trba1          83 HINKVDLQNRPFRLNGDNGEYTCDALIIATGASAR  117 (190)
T ss_dssp             CEEEEECSSSSEEEEESSCEEEEEEEEECCCEEEC
T ss_pred             eeEEEecCCCcEEEEEeeeeEeeeeeeeecceeee
Confidence            66666533   233334567899999999998743

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.76  E-value=4.8e-09  Score=79.58  Aligned_cols=91  Identities=22%  Similarity=0.238  Sum_probs=59.9

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeec
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITD   92 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   92 (368)
                      ...+++|||||+.|+.+|..|+ .|.+|+++|+++.+....      ..+... +.+.... ...+++++.. .+..++.
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~------~~~~~~-~~~~~~~-~~~GV~i~~~~~v~~i~~  105 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERV------TAPPVS-AFYEHLH-REAGVDIRTGTQVCGFEM  105 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT------SCHHHH-HHHHHHH-HHHTCEEECSCCEEEEEE
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccc------cchhhh-hhhhhcc-cccccEEEeCCeEEEEEE
Confidence            4578999999999999999998 599999999998652110      011110 0000000 0125666543 3444432


Q ss_pred             -------cEEEecCCeEEEecEEEEecC
Q 017664           93 -------TEVVTAGGQTFVYDYVVVATG  113 (368)
Q Consensus        93 -------~~v~~~~g~~~~~d~lvlAtG  113 (368)
                             ..+.+++|+.+++|.+++|+|
T Consensus       106 ~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2         106 STDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             CTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             eCCCceEEEEECCCCCEEECCEEEEeeC
Confidence                   147789999999999999998

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.75  E-value=4.8e-09  Score=89.38  Aligned_cols=35  Identities=20%  Similarity=0.389  Sum_probs=31.5

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      ...+|+||||||+||++|..|+ +|++|+|+||++.
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            4578999999999999999997 5999999999764

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.74  E-value=4.7e-10  Score=94.04  Aligned_cols=36  Identities=22%  Similarity=0.231  Sum_probs=32.4

Q ss_pred             CcEEEECCChHHHHHHHHhhc---CCcEEEEcCCCceee
Q 017664           17 KKVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYFEI   52 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~~~~   52 (368)
                      ++|+|||||||||+||.+|++   +++|+|+|+.+..|+
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG   40 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFG   40 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCT
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCc
Confidence            589999999999999999863   789999999998774

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=8.6e-08  Score=83.72  Aligned_cols=116  Identities=15%  Similarity=0.128  Sum_probs=70.8

Q ss_pred             HHHHHHcCCcEEEecceeeecccCCC---eE---EcCCCc--EEecCEEEEccCC-----CCCc--hhhhccc------c
Q 017664          188 ALDWLTSKKVEVILNQSVTLNTISDG---LI---ETSSGE--TIDTDCHFMCTGK-----AMAS--SWLRETI------L  246 (368)
Q Consensus       188 ~~~~l~~~gv~i~~~~~v~~i~~~~~---~v---~~~~g~--~i~~d~vi~a~G~-----~p~~--~~~~~~~------l  246 (368)
                      +.+..+..+|+++.++.+.++..+++   ++   ...+|+  .+.++.||+|||-     ..++  .....++      +
T Consensus       141 l~~~~~~~~v~i~~~~~v~~Ll~d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~tGDG~~mA~~a  220 (311)
T d1kf6a2         141 FQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSH  220 (311)
T ss_dssp             HHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTT
T ss_pred             HHHHHccCcceeEeeeEeeeeEecCCcceeEEEEEcCCCcEEEEECCEEEEcCCCccccccccCCCCCcCcHHHHHHHhc
Confidence            34445567899999999998877766   22   246675  5679999999983     2211  1111111      1


Q ss_pred             ccccCCCCcEEeCCCeeecCCCCeEEecccCCCCc-------cchHHHHHHHHHHHHHHHHHHHc
Q 017664          247 KDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPE-------IKQGYLAQKHALVTAKNLKKLMM  304 (368)
Q Consensus       247 ~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~-------~~~~~~a~~~g~~aa~~i~~~l~  304 (368)
                      +..+..-+++.++++..+ ..+++|+.+++..-..       ........-.++.+++++.....
T Consensus       221 Ga~l~dme~iq~~p~~~~-~~~~~~~~~~~~~~g~~g~n~~~~~~~~e~~~~~~~~~~~~~~~~~  284 (311)
T d1kf6a2         221 GVPLRDMGGIETDQNCET-RIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAA  284 (311)
T ss_dssp             TCCEESCCEEECCTTSBC-SSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceeecccccccccchh-cccCCCcCcceeeeeeEeccccccccccceeecChHHHHHHHHhhc
Confidence            223333467888888877 6899999999764311       11223344446666666665543

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.71  E-value=1.1e-08  Score=83.45  Aligned_cols=102  Identities=18%  Similarity=0.264  Sum_probs=64.4

Q ss_pred             CcEEEECCChHHHHHHHHhhc---CCcEEEEcCCCceeeeccceeeeeccccccc--ceeecccc--cCceeEE-EeEEE
Q 017664           17 KKVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYFEITWASLRAVVEPSFAVR--SVINHGDY--LSNVKIV-VSTAV   88 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~-~~~~~   88 (368)
                      ++|+|||||++|+.+|..|++   +.+|+++|+++...+....+...+...+...  ......+.  ..++++. +.++.
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V~   80 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT   80 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEE
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeecee
Confidence            479999999999999999974   7789999999877654443333322222111  11111111  1267764 44677


Q ss_pred             Eeecc--EEEe---cCC--eEEEecEEEEecCCCCCC
Q 017664           89 SITDT--EVVT---AGG--QTFVYDYVVVATGHVESV  118 (368)
Q Consensus        89 ~~~~~--~v~~---~~g--~~~~~d~lvlAtG~~~~~  118 (368)
                      .++..  .+..   .+|  ..+.||++++|+|+.|..
T Consensus        81 ~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~  117 (198)
T d1nhpa1          81 AIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFE  117 (198)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECC
T ss_pred             eEeeccccceeeecccccccccccceeeEeecceeec
Confidence            77753  4432   333  357899999999988543

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.71  E-value=3.6e-08  Score=87.19  Aligned_cols=97  Identities=16%  Similarity=0.156  Sum_probs=71.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc----------------------------------------
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE----------------------------------------  178 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~----------------------------------------  178 (368)
                      -|+|+|||+|++|+-+|..|+++..+.+|+++++++.+..                                        
T Consensus         4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~y   83 (335)
T d2gv8a1           4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY   83 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred             CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCcccccccccccccccccccccccccc
Confidence            4799999999999999999886544569999999865410                                        


Q ss_pred             ------------------------cc--CchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCC---c---EEe
Q 017664          179 ------------------------FV--GSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSG---E---TID  224 (368)
Q Consensus       179 ------------------------~~--~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g---~---~i~  224 (368)
                                              .+  .+.+.+.+.+..++.+..+++++.|+.++.+++  .|++.++   +   +..
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~~~~~~  163 (335)
T d2gv8a1          84 RDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDI  163 (335)
T ss_dssp             TTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEE
T ss_pred             hhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEEEecCCCCeEEEEE
Confidence                                    00  013445566666777888999999999988776  4554332   1   456


Q ss_pred             cCEEEEccCCC
Q 017664          225 TDCHFMCTGKA  235 (368)
Q Consensus       225 ~d~vi~a~G~~  235 (368)
                      +|.||+|+|..
T Consensus       164 ~d~VI~AtG~~  174 (335)
T d2gv8a1         164 FDAVSICNGHY  174 (335)
T ss_dssp             ESEEEECCCSS
T ss_pred             eeEEEEccccc
Confidence            99999999964

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.69  E-value=5.4e-09  Score=78.09  Aligned_cols=88  Identities=19%  Similarity=0.202  Sum_probs=60.4

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeecc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITDT   93 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   93 (368)
                      ..+++|||||+.|+-+|..|+ .|.+|+|+|+++.+..    +    ++...........+  .+++++.. .+..++.+
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~----~----d~~~~~~~~~~l~~--~GV~~~~~~~v~~~~~~  101 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG----L----DEELSNMIKDMLEE--TGVKFFLNSELLEANEE  101 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT----C----CHHHHHHHHHHHHH--TTEEEECSCCEEEECSS
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC----C----CHHHHHHHHHHHHH--CCcEEEeCCEEEEEeCC
Confidence            368999999999999999998 5999999999986521    1    11111111111111  26776644 56666666


Q ss_pred             EEEecCCeEEEecEEEEecCC
Q 017664           94 EVVTAGGQTFVYDYVVVATGH  114 (368)
Q Consensus        94 ~v~~~~g~~~~~d~lvlAtG~  114 (368)
                      .+. .++..+++|.+++|+|.
T Consensus       102 ~v~-~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2         102 GVL-TNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             EEE-ETTEEEECSCEEEECCE
T ss_pred             EEE-eCCCEEECCEEEEEEEe
Confidence            554 46788999999999994

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.68  E-value=6.6e-08  Score=74.83  Aligned_cols=91  Identities=20%  Similarity=0.266  Sum_probs=64.5

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC---eE
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG---LI  215 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v  215 (368)
                      .++|+|||||++|+|+|..+.+ .....|++++|.+..-.    .........+.+.+++++.+..+.++..+++   .+
T Consensus        45 ~~kVvVIGGGdtA~D~A~~a~r-~GA~~V~vi~rr~~~~~----~a~~~~~~~a~~~~~~~~~~~~~~ei~~~~~~~~~v  119 (153)
T d1gtea3          45 RGAVIVLGAGDTAFDCATSALR-CGARRVFLVFRKGFVNI----RAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAV  119 (153)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHH-TTCSEEEEECSSCGGGC----CSCHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEE
T ss_pred             CCEEEEECCChhHHHHHHHHHH-cCCcceeEEEeCChhhh----ccchhheeecccccceeEeccccEEEEecCCceEEE
Confidence            5799999999999999998775 34567999998765321    2223444455667899999888877765544   11


Q ss_pred             E------cCCC---------cEEecCEEEEccCC
Q 017664          216 E------TSSG---------ETIDTDCHFMCTGK  234 (368)
Q Consensus       216 ~------~~~g---------~~i~~d~vi~a~G~  234 (368)
                      .      .++|         .+++||.||+|.|.
T Consensus       120 ~~~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG~  153 (153)
T d1gtea3         120 QFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS  153 (153)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred             EEEEeeECCCCCEecCCCCEEEEECCEEEECcCc
Confidence            1      1222         36899999999983

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.67  E-value=1.5e-08  Score=74.82  Aligned_cols=89  Identities=19%  Similarity=0.271  Sum_probs=56.1

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeecc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITDT   93 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   93 (368)
                      +.+++|||||+.|+-+|..|++ |.+|+|+|+.+.+...   +    .+...........+  .+++++.. .+..++..
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~---~----d~~~~~~l~~~l~~--~gV~i~~~~~V~~i~~~   91 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT---Y----DSELTAPVAESLKK--LGIALHLGHSVEGYENG   91 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT---S----CHHHHHHHHHHHHH--HTCEEETTCEEEEEETT
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccccc---c----cchhHHHHHHHHHh--hcceEEcCcEEEEEcCC
Confidence            4689999999999999999984 9999999999865311   1    11111110001111  14555433 45566555


Q ss_pred             EEEe--c--CCeEEEecEEEEecC
Q 017664           94 EVVT--A--GGQTFVYDYVVVATG  113 (368)
Q Consensus        94 ~v~~--~--~g~~~~~d~lvlAtG  113 (368)
                      ....  .  +++++++|.+++|+|
T Consensus        92 ~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          92 CLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             EEEEECSSSCCCEECCSCEEECCC
T ss_pred             eEEEEEcCCCeEEEEcCEEEEecC
Confidence            3222  2  235799999999998

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.65  E-value=9.4e-09  Score=83.38  Aligned_cols=101  Identities=16%  Similarity=0.162  Sum_probs=59.2

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccc---eeeeec--ccccc----cce-eecccc--cCcee
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWAS---LRAVVE--PSFAV----RSV-INHGDY--LSNVK   81 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~---~~~~~~--~~~~~----~~~-~~~~~~--~~~~~   81 (368)
                      .++||+||||||+||+||.+|++ |.+++|+|+..........   ......  ..+..    ..+ ....+.  .-+++
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~   83 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTT   83 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhcce
Confidence            35899999999999999999975 9999999987643221110   000000  00000    000 000000  01556


Q ss_pred             EEEeEEEEeecc---EEEecCCeEEEecEEEEecCCC
Q 017664           82 IVVSTAVSITDT---EVVTAGGQTFVYDYVVVATGHV  115 (368)
Q Consensus        82 ~~~~~~~~~~~~---~v~~~~g~~~~~d~lvlAtG~~  115 (368)
                      +..+.+..++..   .....+...+.+|.+++++|..
T Consensus        84 i~~~~V~~~~~~~~~~~v~~~~~~~~~~~~~~a~g~~  120 (192)
T d1vdca1          84 IFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAV  120 (192)
T ss_dssp             EECCCCCEEECSSSSEEEECSSEEEEEEEEEECCCEE
T ss_pred             eeeeeEEecccccCcEEecccceeeeeeeEEEEeeee
Confidence            666666665532   2334456678999999999975

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.61  E-value=5.6e-08  Score=72.02  Aligned_cols=90  Identities=22%  Similarity=0.244  Sum_probs=57.4

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeec
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITD   92 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   92 (368)
                      .+.+++|||||+.|+-+|..|++ |.+|+++++++.+-..       .++.+.......+.+  .+++++.. ++..+..
T Consensus        21 ~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~-------~d~ei~~~l~~~l~~--~Gv~i~~~~~v~~i~~   91 (119)
T d3lada2          21 VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA-------VDEQVAKEAQKILTK--QGLKILLGARVTGTEV   91 (119)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-------SCHHHHHHHHHHHHH--TTEEEEETCEEEEEEE
T ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCc-------ccchhHHHHHHHHHh--cCceeecCcEEEEEEE
Confidence            34789999999999999999984 9999999999865311       111111111111111  25666544 3444542


Q ss_pred             c----EEEecCC---eEEEecEEEEecC
Q 017664           93 T----EVVTAGG---QTFVYDYVVVATG  113 (368)
Q Consensus        93 ~----~v~~~~g---~~~~~d~lvlAtG  113 (368)
                      .    ++...++   +++.+|++++|+|
T Consensus        92 ~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          92 KNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             CSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             eCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence            2    4544433   5799999999998

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.59  E-value=3.6e-08  Score=73.51  Aligned_cols=90  Identities=24%  Similarity=0.200  Sum_probs=57.6

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeec
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITD   92 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   92 (368)
                      +..+++|||||+.|+-+|..|+ .|.+|+++|+.+.+-.      ...++...........  ..+++++.. .+..++.
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~------~~~d~~~~~~~~~~l~--~~gv~~~~~~~v~~i~~  100 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLG------VYLDKEFTDVLTEEME--ANNITIATGETVERYEG  100 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT------TTCCHHHHHHHHHHHH--TTTEEEEESCCEEEEEC
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccc------cccchhhHHHHHHHhh--cCCeEEEeCceEEEEEc
Confidence            4568999999999999999997 5999999999875421      1111111110000111  126666544 3445543


Q ss_pred             c---EEEecCCeEEEecEEEEec
Q 017664           93 T---EVVTAGGQTFVYDYVVVAT  112 (368)
Q Consensus        93 ~---~v~~~~g~~~~~d~lvlAt  112 (368)
                      .   .....+++.+++|.+++|.
T Consensus       101 ~~~~~~v~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2         101 DGRVQKVVTDKNAYDADLVVVAV  123 (123)
T ss_dssp             SSBCCEEEESSCEEECSEEEECS
T ss_pred             CCCEEEEEeCCCEEECCEEEEEC
Confidence            2   3446688899999999983

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.58  E-value=4.7e-08  Score=72.28  Aligned_cols=89  Identities=18%  Similarity=0.225  Sum_probs=59.3

Q ss_pred             CCcEEEECCChHHHHHHHHhh----cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEe
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ----SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSI   90 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~----~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   90 (368)
                      +.+++|||||+.|+-+|..|.    .|.+|+++|+.+.+...   +    ++...........+  .+++++.. .+..+
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~---~----d~~~~~~~~~~l~~--~GI~v~~~~~v~~i   88 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG---F----DSELRKQLTEQLRA--NGINVRTHENPAKV   88 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT---S----CHHHHHHHHHHHHH--TTEEEEETCCEEEE
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceeccccccccc---c----cchhhHHHHHHHhh--CcEEEEcCCEEEEE
Confidence            468999999999999997654    38899999998765311   1    11111110001111  26777644 45555


Q ss_pred             ecc-----EEEecCCeEEEecEEEEecC
Q 017664           91 TDT-----EVVTAGGQTFVYDYVVVATG  113 (368)
Q Consensus        91 ~~~-----~v~~~~g~~~~~d~lvlAtG  113 (368)
                      ...     .+.+++|..+++|.+++|+|
T Consensus        89 ~~~~~g~~~v~~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2          89 TKNADGTRHVVFESGAEADYDVVMLAIG  116 (117)
T ss_dssp             EECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             EECCCCEEEEEECCCCEEEcCEEEEecC
Confidence            422     57889999999999999998

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=3.6e-08  Score=75.08  Aligned_cols=91  Identities=20%  Similarity=0.202  Sum_probs=59.4

Q ss_pred             CCcEEEECCChHHHHHHHHhh-----cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEE
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-----SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVS   89 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-----~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   89 (368)
                      ..+++|||||+.|+-+|..|.     .|.+|+++++++.....      ...............  ..+++++.. .+..
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~------~~~~~~~~~~~~~l~--~~GV~~~~~~~V~~  108 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGK------ILPEYLSNWTMEKVR--REGVKVMPNAIVQS  108 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTT------TSCHHHHHHHHHHHH--TTTCEEECSCCEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcc------cCCHHHHHHHHHHHH--hCCcEEEeCCEEEE
Confidence            468999999999999988774     38999999998864210      011111100000111  126777644 3445


Q ss_pred             eecc----EEEecCCeEEEecEEEEecCC
Q 017664           90 ITDT----EVVTAGGQTFVYDYVVVATGH  114 (368)
Q Consensus        90 ~~~~----~v~~~~g~~~~~d~lvlAtG~  114 (368)
                      ++..    .+.+++|+.+.+|.+++|+|.
T Consensus       109 i~~~~~~~~v~l~~G~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2         109 VGVSSGKLLIKLKDGRKVETDHIVAAVGL  137 (137)
T ss_dssp             EEEETTEEEEEETTSCEEEESEEEECCCE
T ss_pred             EEecCCEEEEEECCCCEEECCEEEEeecC
Confidence            5432    688899999999999999993

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.56  E-value=3.5e-08  Score=85.33  Aligned_cols=34  Identities=29%  Similarity=0.472  Sum_probs=31.2

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEY   49 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~   49 (368)
                      ++||+||||||+||++|..|++ |++|+|+|+.+.
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            5699999999999999999985 999999999864

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=2.4e-08  Score=88.48  Aligned_cols=40  Identities=30%  Similarity=0.411  Sum_probs=36.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeee
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEIT   53 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~   53 (368)
                      .++.||||||||+|||+||+.|+ +|++|+|+|+++.+|+.
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr   43 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGR   43 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTT
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCccc
Confidence            45678999999999999999998 49999999999998864

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=2.2e-08  Score=87.06  Aligned_cols=39  Identities=15%  Similarity=0.283  Sum_probs=35.7

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeec
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITW   54 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~   54 (368)
                      ++|+||||||++|++||++|+ +|.+|+|+|+++++|+..
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~   40 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNA   40 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGG
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccce
Confidence            579999999999999999998 499999999999998754

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.49  E-value=9.8e-08  Score=69.20  Aligned_cols=79  Identities=18%  Similarity=0.164  Sum_probs=55.8

Q ss_pred             HHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCe
Q 017664          135 KVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGL  214 (368)
Q Consensus       135 ~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~  214 (368)
                      ..+.+|+|+|||+|.||.++|.+|++  ..++++++.+.+.....              ..++..  ...+.+++.....
T Consensus        28 ~~f~gK~VlVVG~g~Sa~dia~~l~~--~ak~v~~~~~r~~~~~~--------------~~~~~~--~~~i~~~~~~~~~   89 (107)
T d2gv8a2          28 ELFVGESVLVVGGASSANDLVRHLTP--VAKHPIYQSLLGGGDIQ--------------NESLQQ--VPEITKFDPTTRE   89 (107)
T ss_dssp             GGGTTCCEEEECSSHHHHHHHHHHTT--TSCSSEEEECTTCCSCB--------------CSSEEE--ECCEEEEETTTTE
T ss_pred             hhcCCCeEEEECCCCCHHHHHHHHHH--hcCEEEEEEecCccccc--------------ccccee--cCCeeEEecCCCE
Confidence            34568999999999999999999985  45666666665543211              122322  2345555555558


Q ss_pred             EEcCCCcEEe-cCEEEEc
Q 017664          215 IETSSGETID-TDCHFMC  231 (368)
Q Consensus       215 v~~~~g~~i~-~d~vi~a  231 (368)
                      +.+.||+.++ .|.||+|
T Consensus        90 v~~~dG~~~~~vD~Ii~C  107 (107)
T d2gv8a2          90 IYLKGGKVLSNIDRVIYC  107 (107)
T ss_dssp             EEETTTEEECCCSEEEEC
T ss_pred             EEEcCCCEEeCCCEEEEC
Confidence            9999999887 7999987

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.48  E-value=1.1e-07  Score=76.23  Aligned_cols=32  Identities=22%  Similarity=0.289  Sum_probs=29.4

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCC
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEK   47 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~   47 (368)
                      .|||+||||||+|++||.++.+ |.+|+|||++
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            3799999999999999999974 9999999985

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.45  E-value=5.9e-08  Score=84.86  Aligned_cols=40  Identities=20%  Similarity=0.448  Sum_probs=36.2

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeec
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITW   54 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~   54 (368)
                      ++++|+|||||++||+||+.|++ |++|+|+|+++++|+..
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~   41 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNS   41 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGG
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCee
Confidence            35789999999999999999985 89999999999999754

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.44  E-value=1.3e-07  Score=69.63  Aligned_cols=90  Identities=20%  Similarity=0.232  Sum_probs=57.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEee
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSIT   91 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   91 (368)
                      .+..+++|||||+.|+-+|..|++ |.+|+|+|+.+.+..      . .++...........+  .+++++.. .+..++
T Consensus        20 ~~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~------~-~d~~~~~~~~~~l~~--~gV~i~~~~~v~~i~   90 (117)
T d1onfa2          20 KESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR------K-FDESVINVLENDMKK--NNINIVTFADVVEIK   90 (117)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT------T-SCHHHHHHHHHHHHH--TTCEEECSCCEEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHHHhccccceeeehhccccc------c-ccHHHHHHHHHHHHh--CCCEEEECCEEEEEE
Confidence            345789999999999999999985 999999999886521      0 111111111111111  25666543 344443


Q ss_pred             ---cc--EEEecCCeEE-EecEEEEec
Q 017664           92 ---DT--EVVTAGGQTF-VYDYVVVAT  112 (368)
Q Consensus        92 ---~~--~v~~~~g~~~-~~d~lvlAt  112 (368)
                         ..  ++.+.+|+.+ .||.|++|.
T Consensus        91 ~~~~~~~~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          91 KVSDKNLSIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             ESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred             EcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence               12  5788898877 589999983

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.44  E-value=1.1e-07  Score=76.07  Aligned_cols=108  Identities=19%  Similarity=0.293  Sum_probs=61.5

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeec--cceeeeec-cccccccee-ecccc--cCceeEEEe-E
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITW--ASLRAVVE-PSFAVRSVI-NHGDY--LSNVKIVVS-T   86 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~--~~~~~~~~-~~~~~~~~~-~~~~~--~~~~~~~~~-~   86 (368)
                      ...||||||||++|+.+|..|++ +.+++|++..+....++  ..+..... ......... .....  ......... .
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQ   81 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeeccce
Confidence            45689999999999999999985 77777665554332211  11111000 000000000 00000  012222222 2


Q ss_pred             EEEee--ccEEEecCCeEEEecEEEEecCCCCCCCCch
Q 017664           87 AVSIT--DTEVVTAGGQTFVYDYVVVATGHVESVPKSR  122 (368)
Q Consensus        87 ~~~~~--~~~v~~~~g~~~~~d~lvlAtG~~~~~p~~~  122 (368)
                      ...++  ...+...++.++.+|.+++++|..|..|...
T Consensus        82 ~~~~~~~~~~v~~~~~~~i~~d~~i~~~G~~~~~~~~~  119 (185)
T d1q1ra1          82 VTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCE  119 (185)
T ss_dssp             EEEEETTTTEEEETTSCEEECSEEEECCCEEEEEECCH
T ss_pred             eeeecccccEEEeeceeEEEeeeeeeeeecccCCCCch
Confidence            33333  3478888899999999999999998777753

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.44  E-value=7.7e-08  Score=81.38  Aligned_cols=38  Identities=26%  Similarity=0.251  Sum_probs=33.5

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           12 GLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        12 ~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      .|..++||||||||++||++|++|+ +|++|+|+||+..
T Consensus         2 ~~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~   40 (268)
T d1c0pa1           2 MMHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLP   40 (268)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CCCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            3556789999999999999999998 5999999999763

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.43  E-value=1.8e-07  Score=68.97  Aligned_cols=88  Identities=16%  Similarity=0.227  Sum_probs=57.5

Q ss_pred             CCcEEEECCChHHHHHHHHhh----cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEe
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ----SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSI   90 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~----~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   90 (368)
                      +.+++|||||+.|+-+|..|+    ++.+|+|+|+.+.+-.   .    .++..........++  .+++++.. .+..+
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~---~----~d~~~~~~l~~~l~~--~GV~v~~~~~v~~i   90 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILR---G----FDHTLREELTKQLTA--NGIQILTKENPAKV   90 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSST---T----SCHHHHHHHHHHHHH--TTCEEEESCCEEEE
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhc---c----cchHHHHHHHHHHHh--cCcEEEcCCEEEEE
Confidence            468999999999999997664    3678999999876421   1    111111111111111  26777654 45555


Q ss_pred             ec-----cEEEecCCeEEEecEEEEec
Q 017664           91 TD-----TEVVTAGGQTFVYDYVVVAT  112 (368)
Q Consensus        91 ~~-----~~v~~~~g~~~~~d~lvlAt  112 (368)
                      +.     ..+.+++|+++++|.+++|.
T Consensus        91 e~~~~~~~~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          91 ELNADGSKSVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             EECTTSCEEEEETTSCEEEESEEEECS
T ss_pred             EEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence            42     16888999999999999983

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.41  E-value=1.9e-07  Score=68.88  Aligned_cols=88  Identities=26%  Similarity=0.272  Sum_probs=54.7

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeec
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITD   92 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   92 (368)
                      .+.+++|||||+.|+-+|..|+ .|.+|+|+|+.+.+...   +    ++...........+  .+++++.. .+..++.
T Consensus        21 ~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~---~----d~~~~~~l~~~l~~--~GI~i~~~~~v~~i~~   91 (117)
T d1ebda2          21 VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG---F----EKQMAAIIKKRLKK--KGVEVVTNALAKGAEE   91 (117)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT---S----CHHHHHHHHHHHHH--TTCEEEESEEEEEEEE
T ss_pred             cCCeEEEECCCccceeeeeeecccccEEEEEEecceeccc---c----cchhHHHHHHHHHh--cCCEEEcCCEEEEEEE
Confidence            3478999999999999999987 59999999999875311   1    11111111111111  26776544 4455543


Q ss_pred             c----EEEe-cCC--eEEEecEEEEe
Q 017664           93 T----EVVT-AGG--QTFVYDYVVVA  111 (368)
Q Consensus        93 ~----~v~~-~~g--~~~~~d~lvlA  111 (368)
                      .    .+.. .+|  +++++|.|++.
T Consensus        92 ~~~~~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          92 REDGVTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             ETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred             cCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence            2    3333 344  56899999873

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.39  E-value=7.3e-08  Score=77.98  Aligned_cols=40  Identities=18%  Similarity=0.247  Sum_probs=34.5

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc-CC-cEEEEcCCCceeeec
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS-FA-DVVLIDEKEYFEITW   54 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~-g~-~v~lie~~~~~~~~~   54 (368)
                      .+++|+||||||+||+||.+|++ |+ +|+|+|+++..+..+
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~   44 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLS   44 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHH
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchh
Confidence            35799999999999999999984 88 599999999877543

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.35  E-value=9.9e-08  Score=81.92  Aligned_cols=40  Identities=28%  Similarity=0.337  Sum_probs=35.0

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-c-CCcEEEEcCCCceeeec
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-S-FADVVLIDEKEYFEITW   54 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~-g~~v~lie~~~~~~~~~   54 (368)
                      ..+||+||||||+||+||++|+ + |++|+|+|+++.+|..+
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~   73 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGA   73 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCce
Confidence            4689999999999999999984 4 99999999998887543

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.33  E-value=2.6e-07  Score=68.54  Aligned_cols=35  Identities=20%  Similarity=0.249  Sum_probs=31.8

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCce
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYF   50 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~   50 (368)
                      ..+++|||||+.|+-.|..|+ .|.+|+++++.+.+
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~   57 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPL   57 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcchhheEeeccchh
Confidence            478999999999999999998 59999999998765

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.32  E-value=5.7e-07  Score=66.67  Aligned_cols=33  Identities=18%  Similarity=0.095  Sum_probs=29.7

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCC
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKE   48 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~   48 (368)
                      +.+++|||||+.|+-+|..|++ |.+|+|+++++
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~   53 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSI   53 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCCeEEEEEech
Confidence            4589999999999999999985 99999999764

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.30  E-value=9.2e-06  Score=66.36  Aligned_cols=93  Identities=20%  Similarity=0.139  Sum_probs=63.5

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc-c---------cc--------cc---Cch---hHHHHHHHHH-c
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK-L---------LE--------FV---GSR---ASQIALDWLT-S  194 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~-~---------l~--------~~---~~~---~~~~~~~~l~-~  194 (368)
                      -.|+|||+|+.|+|.|...++  .+.++.+++.+.. +         ..        ..   .+.   ....+.+.++ .
T Consensus         3 YDVIVIGgG~AG~eAA~~aAR--~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~   80 (230)
T d2cula1           3 YQVLIVGAGFSGAETAFWLAQ--KGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGL   80 (230)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--TTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTC
T ss_pred             CcEEEECcCHHHHHHHHHHHH--CCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhh
Confidence            368999999999999998885  5888989876421 0         00        00   111   2222344444 4


Q ss_pred             CCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCCC
Q 017664          195 KKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       195 ~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~~  235 (368)
                      .+++++.... ..+..+++   .|++.+|.++.+..||++||.-
T Consensus        81 ~nL~i~q~~V-~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTF  123 (230)
T d2cula1          81 RPLHLFQATA-TGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSF  123 (230)
T ss_dssp             TTEEEEECCE-EEEEEETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred             cCHHHHhccc-eeeEecccceeeEEeccccEEEEeEEEEccCcc
Confidence            5889887654 44444444   6889999999999999999963

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.24  E-value=5.6e-07  Score=66.93  Aligned_cols=89  Identities=18%  Similarity=0.213  Sum_probs=54.3

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeec-
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITD-   92 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   92 (368)
                      ..+++|||||+.|+-+|..+++ |.+|+++|+.+.+...       .++...........+  .++++... .+..+.. 
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~-------~d~~~~~~l~~~l~~--~gv~~~~~~~v~~v~~~   96 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-------ADRDLVKVWQKQNEY--RFDNIMVNTKTVAVEPK   96 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-------SCHHHHHHHHHHHGG--GEEEEECSCEEEEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccccc-------chhhHHHHHHHHHHH--cCcccccCcEEEEEEEc
Confidence            5789999999999999999885 9999999998865311       111111111111111  14444332 3333332 


Q ss_pred             -c--EEEec--CC--eEEEecEEEEecC
Q 017664           93 -T--EVVTA--GG--QTFVYDYVVVATG  113 (368)
Q Consensus        93 -~--~v~~~--~g--~~~~~d~lvlAtG  113 (368)
                       .  .+.+.  ++  +.+++|.|++|+|
T Consensus        97 ~~g~~v~~~~~~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          97 EDGVYVTFEGANAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             TTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred             CCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence             1  33332  22  4799999999998

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.23  E-value=2.6e-06  Score=70.52  Aligned_cols=129  Identities=13%  Similarity=0.102  Sum_probs=80.1

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc----------ccCchhHHHHHHHHHcCCcEEEecceeeecc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE----------FVGSRASQIALDWLTSKKVEVILNQSVTLNT  209 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~----------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~  209 (368)
                      .+|+|||+|++|+.+|..|.+...+.+|+++++.+.+..          .....+.......+++.|++++.++.|..-.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   81 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGRDV   81 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBTTTB
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEeeEEeCccc
Confidence            389999999999999999987667889999999876521          1233445666778889999999988763110


Q ss_pred             cCCCeEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCC
Q 017664          210 ISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITD  278 (368)
Q Consensus       210 ~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~  278 (368)
                         ....+    .-.+|.+++|+|..+.........   ..+...........+....+..+..|+...
T Consensus        82 ---~~~~l----~~~~d~v~~a~Ga~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  140 (230)
T d1cjca2          82 ---TVQEL----QDAYHAVVLSYGAEDKSRPIDPSV---PFDPKLGVVPNMEGRVVDVPGLYCSGWVKR  140 (230)
T ss_dssp             ---CHHHH----HHHSSEEEECCCCCEECCCCCTTS---CCBTTTTBCCEETTEETTCTTEEECTHHHH
T ss_pred             ---cHHHH----HhhhceEEEEeecccccccccccc---cccccccccccccceeeccccccccccccc
Confidence               00001    124899999999865322111111   011111122222223335778888877543

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.21  E-value=3.6e-07  Score=81.52  Aligned_cols=112  Identities=17%  Similarity=0.189  Sum_probs=68.0

Q ss_pred             HcCCcEEEecceeeecccCCC-----eEE---cCCCc--EEecCEEEEccCCCCCchhhhcccccc--------------
Q 017664          193 TSKKVEVILNQSVTLNTISDG-----LIE---TSSGE--TIDTDCHFMCTGKAMASSWLRETILKD--------------  248 (368)
Q Consensus       193 ~~~gv~i~~~~~v~~i~~~~~-----~v~---~~~g~--~i~~d~vi~a~G~~p~~~~~~~~~l~~--------------  248 (368)
                      .+.|+++++++.|.+|..++.     .|+   ..+|+  ++.++.||++.|..-.+.++..++...              
T Consensus       229 ~~~~~~l~~~a~V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a~~vilaaGa~~tp~lL~~Sg~~~~~~~~~~~~~~~~~  308 (379)
T d2f5va1         229 PEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPTNPPELLP  308 (379)
T ss_dssp             EEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEEEEEEEEECSCHHHHHHHHHHTTSSCCSSCCTTSCCSSST
T ss_pred             cCCCCEEecCCEEEEEEEeCCCCEEEEEEEEECCCCEEEEEeceEEEeccCccCCHHHHhhcccccccccccccCccccc
Confidence            456899999999999876532     343   44565  677999999999753333333332210              


Q ss_pred             -------ccCCC-CcEEeCCCeeecCCCCeEEecccCCCC--ccchHHHHHHHHHHHHHHHHHHHc
Q 017664          249 -------SLDGR-GRLMVDENLRVRGFKNVFAIGDITDIP--EIKQGYLAQKHALVTAKNLKKLMM  304 (368)
Q Consensus       249 -------~~~~~-g~i~vd~~~~~~~~~~ifa~GD~~~~~--~~~~~~~a~~~g~~aa~~i~~~l~  304 (368)
                             -.+.. ..-.||+++++.+.+|+|++|...-..  ......+...=+..+|+.|.+.++
T Consensus       309 ~~g~h~mG~~~~~~~~vvd~~~~v~g~~nlyv~d~sv~p~~~~~nPt~t~~alA~r~a~~i~~~~~  374 (379)
T d2f5va1         309 SLGSHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCEYIKQNFT  374 (379)
T ss_dssp             TTTBTCBCSCTTTTTCSBCTTCBBTTCSSEEECSGGGCCSCCCSCSHHHHHHHHHHHHHHHHHHCC
T ss_pred             ccceeecccCCCCCCccCCCCCcccccCCEEEeCCcccCCccccCcHHHHHHHHHHHHHHHHHhhc
Confidence                   00110 113688999998899999877643211  111223455556678888886543

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.21  E-value=9.4e-07  Score=65.46  Aligned_cols=35  Identities=20%  Similarity=0.334  Sum_probs=32.0

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCce
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYF   50 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~   50 (368)
                      +.+++|||||+.|+-+|..|+ .|.+|+|+|+++.+
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~   58 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI   58 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEecccc
Confidence            568999999999999999997 59999999999865

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=1.2e-06  Score=65.15  Aligned_cols=35  Identities=14%  Similarity=0.136  Sum_probs=31.9

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCce
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYF   50 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~   50 (368)
                      +++++|||||+.|+-+|..|+ .|.+|+++++++.+
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~   57 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKV   57 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeecccc
Confidence            468999999999999999987 59999999999865

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.14  E-value=6.7e-07  Score=76.30  Aligned_cols=98  Identities=20%  Similarity=0.181  Sum_probs=56.5

Q ss_pred             cCCcEEEecceeeecccCCC--eEEcCCC----cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCC
Q 017664          194 SKKVEVILNQSVTLNTISDG--LIETSSG----ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGF  267 (368)
Q Consensus       194 ~~gv~i~~~~~v~~i~~~~~--~v~~~~g----~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~  267 (368)
                      ..++.+..+++++.+..+++  .+.+.++    +++++|++|.|-|.....   ......   ...   ...........
T Consensus       118 ~~~~~~~~~~~v~~~~~~~~~v~v~~~~g~~~~~~~~ad~vi~ADG~~S~v---r~~~~~---~~~---~~~~~~~~~~~  188 (288)
T d3c96a1         118 LGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIHSAV---RAHLHP---DQR---PLRDPLPHWGR  188 (288)
T ss_dssp             HCTTSEEESEEEEEEEEETTEEEEEEEETTSCEEEEEESEEEECCCTTCHH---HHHHCT---TCC---CCCCCCSCCCB
T ss_pred             ccCeeeecCcEEEEeeecCCcEEEEEEcCCCCeEEEeeceeeccCCcccee---eeeecc---ccc---ccccccccccc
Confidence            35677888888877766555  4555544    479999999999976322   111100   000   00111112245


Q ss_pred             CCeEEecccCCCCcc---chHHHHHHHHHHHHHHHH
Q 017664          268 KNVFAIGDITDIPEI---KQGYLAQKHALVTAKNLK  300 (368)
Q Consensus       268 ~~ifa~GD~~~~~~~---~~~~~a~~~g~~aa~~i~  300 (368)
                      .++..+||++....|   .-...|...+...+..+.
T Consensus       189 ~~~~~~gda~h~~~p~~g~G~~~ai~d~~~l~~~l~  224 (288)
T d3c96a1         189 GRITLLGDAAHLMYPMGANGASQAILDGIELAAALA  224 (288)
T ss_dssp             TTEEECTHHHHCCCSSTTCTHHHHHHHHHHHHHHHH
T ss_pred             CcceecccccceeCCccccchhhhhhhHHHHHHHHh
Confidence            689999998754333   223456666776666654

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.08  E-value=5.8e-07  Score=79.47  Aligned_cols=37  Identities=22%  Similarity=0.293  Sum_probs=32.5

Q ss_pred             CCCcEEEECCChHHHHHHHHhh------cCCcEEEEcCCCcee
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ------SFADVVLIDEKEYFE   51 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~------~g~~v~lie~~~~~~   51 (368)
                      ..+||+||||||+||++|..|+      +|++|+|+|+.+...
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~   48 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV   48 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence            4589999999999999999983      499999999987654

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.07  E-value=9.3e-07  Score=76.95  Aligned_cols=40  Identities=23%  Similarity=0.241  Sum_probs=35.0

Q ss_pred             CCCcEEEECCChHHHHHHHHhh---cCCcEEEEcCCCceeeec
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ---SFADVVLIDEKEYFEITW   54 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~---~g~~v~lie~~~~~~~~~   54 (368)
                      ..+||+||||||+||+||++|+   .|++|+|+|+++.+|...
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   91 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGS   91 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCccee
Confidence            3679999999999999999996   289999999999887543

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.05  E-value=1.3e-05  Score=67.35  Aligned_cols=96  Identities=16%  Similarity=0.113  Sum_probs=70.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc------cCchhH---------------------------
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF------VGSRAS---------------------------  185 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~------~~~~~~---------------------------  185 (368)
                      .+||+|||+|++|+-+|..|.+  .+.+|+++++++.....      +.+...                           
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~--~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~   81 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRD--AGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALT   81 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTT
T ss_pred             CCcEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEeccC
Confidence            5799999999999999999986  48999999986542110      011100                           


Q ss_pred             -----------------HHHH-HHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCC
Q 017664          186 -----------------QIAL-DWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       186 -----------------~~~~-~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                                       ..+. ..-...++.++.++.+..++..++  .+.++||+++++|++|.|.|...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG~~s  152 (265)
T d2voua1          82 GERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGAS  152 (265)
T ss_dssp             CCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred             CceecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCceEEEECCCCEEEEEEEeccccccc
Confidence                             1111 122345678888999988877655  78889999999999999999764

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.02  E-value=3e-06  Score=62.72  Aligned_cols=35  Identities=26%  Similarity=0.272  Sum_probs=32.0

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCce
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYF   50 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~   50 (368)
                      +.+++|||||+.|+-+|..+++ |.+|+|+++++.+
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~   60 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI   60 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEcccc
Confidence            5689999999999999999985 9999999999865

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.99  E-value=5.7e-06  Score=68.12  Aligned_cols=37  Identities=22%  Similarity=0.310  Sum_probs=30.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhh-------------------CCCCeEEEEecCcc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVD-------------------FPDKKVILVHRGPK  175 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~-------------------~~~~~v~~i~~~~~  175 (368)
                      +++|+|||+|++|+++|..+.+.                   ....+|+++.|+..
T Consensus        39 gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~   94 (225)
T d1cjca1          39 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP   94 (225)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence            79999999999999999988742                   23468999998764

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=97.96  E-value=1.2e-06  Score=76.85  Aligned_cols=37  Identities=27%  Similarity=0.228  Sum_probs=33.5

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCcee
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFE   51 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~   51 (368)
                      +++||+|||+|+|||+||..+. +|.+|+|+||.+..+
T Consensus         6 ~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~g   43 (330)
T d1neka2           6 REFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTR   43 (330)
T ss_dssp             EEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence            5789999999999999999997 599999999987665

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.90  E-value=3.4e-06  Score=74.54  Aligned_cols=36  Identities=25%  Similarity=0.452  Sum_probs=31.5

Q ss_pred             CCcEEEECCChHHHHHHHHhh-----cCCcEEEEcCCCcee
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-----SFADVVLIDEKEYFE   51 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-----~g~~v~lie~~~~~~   51 (368)
                      .+||||||||+|||+||..|+     +|.+|+||||++..+
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~g   61 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVER   61 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTT
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCC
Confidence            589999999999999998874     499999999987543

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=97.82  E-value=6.2e-06  Score=73.30  Aligned_cols=37  Identities=19%  Similarity=0.387  Sum_probs=32.8

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCce
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYF   50 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~   50 (368)
                      ...+|+||||+|++|+.+|.+|. +|++|+|+|++..+
T Consensus         5 ~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~~   42 (370)
T d3coxa1           5 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSW   42 (370)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            45789999999999999999997 59999999997543

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.78  E-value=1.6e-05  Score=64.90  Aligned_cols=37  Identities=16%  Similarity=0.309  Sum_probs=30.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHhh-------------------hCCCCeEEEEecCcc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAV-------------------DFPDKKVILVHRGPK  175 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~-------------------~~~~~~v~~i~~~~~  175 (368)
                      +++|+|||+|++|+++|..+.+                   +....+|+++.|+..
T Consensus        39 gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~   94 (216)
T d1lqta1          39 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP   94 (216)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             CceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECCh
Confidence            6999999999999999987762                   234568999988743

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=0.00018  Score=62.50  Aligned_cols=116  Identities=13%  Similarity=0.059  Sum_probs=62.1

Q ss_pred             HHHHHHcCCcEEEecceeeecccC-CC------eEEcCCCc--EEecCEEEEccCCCCC-------ch--------hhhc
Q 017664          188 ALDWLTSKKVEVILNQSVTLNTIS-DG------LIETSSGE--TIDTDCHFMCTGKAMA-------SS--------WLRE  243 (368)
Q Consensus       188 ~~~~l~~~gv~i~~~~~v~~i~~~-~~------~v~~~~g~--~i~~d~vi~a~G~~p~-------~~--------~~~~  243 (368)
                      +.+..++.+++++..+.+...... ++      .....+|+  .+.++.+|+|||--..       +.        +...
T Consensus       149 L~~~~~~~~v~~~~~~~~~~l~~~~~~~~~g~~~~~~~~g~~~~~~a~~vIlAtGG~~~ly~~ttn~~~~tGdG~~~a~~  228 (330)
T d1neka2         149 LYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIR  228 (330)
T ss_dssp             HHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEEETTTCCEEEEEESCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHT
T ss_pred             HHHHHHhcCCeEEEEEEEEEeeeeccccceeeeeEEccCCcEEEEeccEEEEcCCCccccccCcCCCCccEeHHHHHHHH
Confidence            344555677888777776655442 22      23345564  5779999999994311       11        1111


Q ss_pred             cccccccCCCCcEEeC---------CCeeecCCCCeEEecccCCCC-------ccchHHHHHHHHHHHHHHHHHHHc
Q 017664          244 TILKDSLDGRGRLMVD---------ENLRVRGFKNVFAIGDITDIP-------EIKQGYLAQKHALVTAKNLKKLMM  304 (368)
Q Consensus       244 ~~l~~~~~~~g~i~vd---------~~~~~~~~~~ifa~GD~~~~~-------~~~~~~~a~~~g~~aa~~i~~~l~  304 (368)
                      .+.. ..|..+++..+         +..+..-.|++|++|+|+...       .......+.-.|+.|++.+...+.
T Consensus       229 aGa~-l~d~~~~~~~~~~~~~~~~~~~g~~~v~~gl~a~Ge~a~~g~HganrL~~nsl~~~~v~g~~ag~~~~~~~~  304 (330)
T d1neka2         229 AGVP-VQDMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESIA  304 (330)
T ss_dssp             TTCC-EESECCBEEBCTTCEEEEECSSSCEEEEEEEEECSSSEECSSSTTSCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCC-ccccccccccccccceeecccCCCceecccccccCcccccccccccccccccHHHHHHHHHHHHHHHHHHhh
Confidence            1111 12223333332         221111268999999987531       112334566677777777776654

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.73  E-value=6.2e-06  Score=72.83  Aligned_cols=38  Identities=24%  Similarity=0.406  Sum_probs=33.2

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHhhcCCcEEEEcCCCc
Q 017664           12 GLVEKKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEY   49 (368)
Q Consensus        12 ~~~~~~~vvIIGaG~aGl~aA~~L~~g~~v~lie~~~~   49 (368)
                      .+...||+||||||+||+.+|.+|+.+.+|+|||+++.
T Consensus        22 ~~~~~YD~IIVGsG~aG~vlA~rLae~~kVLvLEaG~~   59 (351)
T d1ju2a1          22 ELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSL   59 (351)
T ss_dssp             CSEEEEEEEEECCSTTHHHHHHHHTTTSCEEEECSSBC
T ss_pred             cccCCccEEEECccHHHHHHHHHhcCCCCEEEEecCCC
Confidence            34456899999999999999999987799999999964

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=97.73  E-value=1e-05  Score=71.76  Aligned_cols=34  Identities=21%  Similarity=0.408  Sum_probs=30.8

Q ss_pred             CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCce
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYF   50 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~   50 (368)
                      .||||||+|++|+.+|.+|. +|++|+|+|++..+
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~~   37 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLW   37 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCCC
Confidence            48999999999999999997 59999999998654

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=97.69  E-value=1.2e-05  Score=71.13  Aligned_cols=35  Identities=20%  Similarity=0.383  Sum_probs=31.7

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      +.||+||||+|+||+.+|.+|. .|.+|+|+|++..
T Consensus         1 t~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~   36 (360)
T d1kdga1           1 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   36 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccCC
Confidence            3689999999999999999997 5999999999864

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=97.68  E-value=5.8e-05  Score=61.98  Aligned_cols=36  Identities=25%  Similarity=0.526  Sum_probs=29.7

Q ss_pred             hcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          137 KSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       137 ~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      .++|+|+|||+|.||+|+|.++.+.  +.+++++.+.+
T Consensus        30 ~~gK~V~VvG~G~Sa~dia~~~~~~--~~~~~~~~~~~   65 (235)
T d1w4xa2          30 FSGQRVGVIGTGSSGIQVSPQIAKQ--AAELFVFQRTP   65 (235)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHH--BSEEEEEESSC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhh--hcccccccccc
Confidence            4689999999999999999999863  56777666554

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.67  E-value=1.6e-05  Score=65.68  Aligned_cols=91  Identities=15%  Similarity=0.039  Sum_probs=65.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhh-----CCCCeEEEEecCcccc--------c--ccCchhHHHHHHHHHcCCcEEEecc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVD-----FPDKKVILVHRGPKLL--------E--FVGSRASQIALDWLTSKKVEVILNQ  203 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~-----~~~~~v~~i~~~~~~l--------~--~~~~~~~~~~~~~l~~~gv~i~~~~  203 (368)
                      +.+|+|||+|++|+.+|..|.++     ..+.+|+++++.+.+.        |  .......+.....+.+.|+++++++
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~~   81 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV   81 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEEE
Confidence            46899999999999999999865     2346899999987542        2  1234556777788899999999998


Q ss_pred             eeeecccCCCeEEcCCCcEEecCEEEEccCCCC
Q 017664          204 SVTLNTISDGLIETSSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       204 ~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p  236 (368)
                      .+.....      .+ .-...+|.++++||..+
T Consensus        82 ~v~~~~~------~~-~~~~~~~~v~~atGa~~  107 (239)
T d1lqta2          82 VVGEHVQ------PG-ELSERYDAVIYAVGAQS  107 (239)
T ss_dssp             CBTTTBC------HH-HHHHHSSEEEECCCCCE
T ss_pred             Eeccccc------hh-hhhccccceeeecCCCc
Confidence            7632110      00 01235899999999764

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.62  E-value=0.00013  Score=62.92  Aligned_cols=39  Identities=33%  Similarity=0.489  Sum_probs=34.0

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL  176 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~  176 (368)
                      ....|+|||+|++|+.+|..|+++..+.+|+++++.+.+
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~   87 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP   87 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Confidence            356799999999999999999976779999999987653

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.58  E-value=0.00017  Score=55.04  Aligned_cols=37  Identities=24%  Similarity=0.192  Sum_probs=29.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCc-EEEEcCCCce
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFAD-VVLIDEKEYF   50 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~-v~lie~~~~~   50 (368)
                      ....+|||||||..|+-+|..+. .|.+ |+++.+.+..
T Consensus        43 ~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~   81 (153)
T d1gtea3          43 SIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFV   81 (153)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGG
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChh
Confidence            34568999999999999998765 5664 8899887654

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.57  E-value=0.00042  Score=58.12  Aligned_cols=36  Identities=25%  Similarity=0.357  Sum_probs=30.6

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCC-CeEEEEecCcccc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPD-KKVILVHRGPKLL  177 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~-~~v~~i~~~~~~l  177 (368)
                      -+|+|||+|++|+-+|..|.+  .+ .+|+++++.+.+.
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~--~Gi~~V~V~Er~~~~~   38 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQ--AGIGKVTLLESSSEIR   38 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCSEEEEEESSSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHh--CCCCeEEEEeCCCCCC
Confidence            479999999999999999886  46 4899999987653

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=97.56  E-value=2.5e-05  Score=69.73  Aligned_cols=36  Identities=22%  Similarity=0.408  Sum_probs=31.8

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhc--CCcEEEEcCCCc
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQS--FADVVLIDEKEY   49 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~--g~~v~lie~~~~   49 (368)
                      .+.+|+||||||+||+.+|.+|.+  +.+|+|+|+++.
T Consensus        15 ~~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~   52 (385)
T d1cf3a1          15 GRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSY   52 (385)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCC
T ss_pred             CCeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence            356999999999999999999974  589999999864

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=97.52  E-value=3.1e-05  Score=69.21  Aligned_cols=36  Identities=22%  Similarity=0.405  Sum_probs=31.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhc-C-CcEEEEcCCCc
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQS-F-ADVVLIDEKEY   49 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~-g-~~v~lie~~~~   49 (368)
                      .+.||+||||||+||+.+|.+|.+ + .+|+|||+++.
T Consensus        22 ~~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          22 GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             CCeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            346999999999999999999984 4 79999999964

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.50  E-value=4.7e-05  Score=63.98  Aligned_cols=35  Identities=23%  Similarity=0.387  Sum_probs=29.7

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL  176 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~  176 (368)
                      ..++|||+|+.|+++|..+++  .+.+|+++++.+.+
T Consensus        43 yDvvVIGgG~aG~~aA~~~a~--~G~kv~vve~~~~l   77 (261)
T d1mo9a1          43 YDAIFIGGGAAGRFGSAYLRA--MGGRQLIVDRWPFL   77 (261)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCcc
Confidence            359999999999999999985  58899999987643

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.49  E-value=9.4e-06  Score=67.21  Aligned_cols=96  Identities=26%  Similarity=0.311  Sum_probs=57.6

Q ss_pred             hcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccc---------C--chhHHHHHHHHH---cCCcEEEec
Q 017664          137 KSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFV---------G--SRASQIALDWLT---SKKVEVILN  202 (368)
Q Consensus       137 ~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~---------~--~~~~~~~~~~l~---~~gv~i~~~  202 (368)
                      ...++|+|||+|++|+.+|..|++  .+.+|+++++++++....         .  ..........+.   ..++.....
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~--~G~~v~l~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLME--SGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLA  124 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHHHHHTTCTTCEEE
T ss_pred             cCCceEEEEcccHHHHHHHHHHHH--hccceeeEeeccccCCccccccccceeecccccchhHHHHHHHHhhcceeeeee
Confidence            357999999999999999999986  588999999887653210         0  111222222232   222221111


Q ss_pred             ceeeecccCCCeEEcCCCcEEecCEEEEccCCCCCchhh
Q 017664          203 QSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWL  241 (368)
Q Consensus       203 ~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~  241 (368)
                      .       ....+...+..++.+|.+|+|||..+.....
T Consensus       125 ~-------~~~~~~~~~~~~~~~d~vviAtG~~~~~~~~  156 (233)
T d1djqa3         125 L-------GQKPMTADDVLQYGADKVIIATGASECTLWN  156 (233)
T ss_dssp             C-------SCCCCCHHHHHTSCCSEEEECCCEECCHHHH
T ss_pred             c-------ccccccchhhhhhccceeeeccCCCcccccc
Confidence            0       1111222223456799999999988765443

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.42  E-value=0.00024  Score=54.42  Aligned_cols=36  Identities=17%  Similarity=0.177  Sum_probs=29.9

Q ss_pred             CCcEEEE--CCChHHHHHHHHhh-cCCcEEEEcCCCcee
Q 017664           16 KKKVVVI--GGGVGGSLLAYHIQ-SFADVVLIDEKEYFE   51 (368)
Q Consensus        16 ~~~vvII--GaG~aGl~aA~~L~-~g~~v~lie~~~~~~   51 (368)
                      ...++|+  |||+.|+.+|..|+ +|.+|+|+++.+.+.
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~   77 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLAN   77 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTT
T ss_pred             CCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccc
Confidence            3455665  99999999999998 599999999987653

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.34  E-value=0.0033  Score=54.57  Aligned_cols=41  Identities=22%  Similarity=0.271  Sum_probs=32.3

Q ss_pred             CCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCC
Q 017664          266 GFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGR  306 (368)
Q Consensus       266 ~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~  306 (368)
                      ..|++|++||+++.........+...|+++++++.+.+...
T Consensus       284 ~~~gl~~~g~~~~~~g~rf~~~~~~~g~~a~~~~~~~i~~~  324 (356)
T d1jnra2         284 TVKGLFAIGDCAGANPHKFSSGSFTEGRIAAKAAVRFILEQ  324 (356)
T ss_dssp             SSBTEEECGGGBCSCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccchhcCCccccCccccccccchhHHHHHHHHHcC
Confidence            47899999999876554556678888999999998877543

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.32  E-value=1.5e-05  Score=66.02  Aligned_cols=31  Identities=35%  Similarity=0.411  Sum_probs=25.7

Q ss_pred             CcEEEECCChHHHHHHHHhh-cCCcEEEEcCC
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEK   47 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~   47 (368)
                      ++|+|||||++||++|++|+ +|++|+++|+.
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~~   32 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDV   32 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEE
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEEeee
Confidence            36999999999999999997 48776666653

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.28  E-value=0.00056  Score=57.90  Aligned_cols=95  Identities=15%  Similarity=0.224  Sum_probs=63.0

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc-------cc--------------------------------
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE-------FV--------------------------------  180 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~-------~~--------------------------------  180 (368)
                      .+|+|||+|++|+-+|..|.+.  |.+|+++++.+...+       .+                                
T Consensus         3 ~~V~IvGaGp~Gl~~A~~L~~~--G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~   80 (292)
T d1k0ia1           3 TQVAIIGAGPSGLLLGQLLHKA--GIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFA   80 (292)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHH--TCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEET
T ss_pred             CCEEEECcCHHHHHHHHHHHHC--CCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccceEEEec
Confidence            3799999999999999999964  889999998752100       00                                


Q ss_pred             ---------------------CchhHHHHHHHHHcCCcEEEecceeeec-ccCCC--eEEc-CCCc--EEecCEEEEccC
Q 017664          181 ---------------------GSRASQIALDWLTSKKVEVILNQSVTLN-TISDG--LIET-SSGE--TIDTDCHFMCTG  233 (368)
Q Consensus       181 ---------------------~~~~~~~~~~~l~~~gv~i~~~~~v~~i-~~~~~--~v~~-~~g~--~i~~d~vi~a~G  233 (368)
                                           ...+...+.+.+++.+..++.+...... ..+++  .+.. .+|+  ++.+|+||-|.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~i~a~~vVgADG  160 (292)
T d1k0ia1          81 GQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDG  160 (292)
T ss_dssp             TEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCC
T ss_pred             ccccccccccccccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCceEEEEecCCcEEEEEeCEEEECCC
Confidence                                 0123333556666667766666654433 33333  4443 4553  578999999999


Q ss_pred             CCC
Q 017664          234 KAM  236 (368)
Q Consensus       234 ~~p  236 (368)
                      ...
T Consensus       161 ~~S  163 (292)
T d1k0ia1         161 FHG  163 (292)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            774

>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.15  E-value=0.0011  Score=49.54  Aligned_cols=108  Identities=17%  Similarity=0.143  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHhcCCeEEEE-cCch-----hHHHHH----HHHhhhCCCCeEEEEecCccc--ccccCchhHHHHHHH
Q 017664          124 ERLSQYEKDFEKVKSANSVLIV-GGGP-----TGVELA----GEIAVDFPDKKVILVHRGPKL--LEFVGSRASQIALDW  191 (368)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~v~Vv-G~g~-----~~~e~a----~~l~~~~~~~~v~~i~~~~~~--l~~~~~~~~~~~~~~  191 (368)
                      .....+.+..+.+..+.++++. .+.+     ...|.+    ..++++....++.++...+..  .+.+.+.+.+.+.+.
T Consensus        18 ~~~~~L~~~l~~~~~Gg~vv~t~p~~P~kCpgAP~e~a~l~~~~lr~~g~r~kv~i~~~~~~~~~~~~~~~~~~~~~~~~   97 (141)
T d1fcda2          18 EQTAILRKQLEDMADGGTVVIAPPAAPFRCPPGPYERASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFG   97 (141)
T ss_dssp             HHHHHHHHHHHHSCTTCCEEEECCCSSCSSTTHHHHHHHHHHHHHGGGCSCCCEEEECSCSSCTTHHHHHHHHHHHHCST
T ss_pred             HHHHHHHHHHHhcccCCeEEEecCCCCccCCchHHHHHHHHHHHHHHcCCCCcEEEEecCCCCccCCcccHHHHHHHHHH
Confidence            4455566666666556666543 3332     234444    444554455678887665542  112223445566667


Q ss_pred             HHcCCcEEEecce--eeecccCCCeEEcCCCcEEecCEEEEc
Q 017664          192 LTSKKVEVILNQS--VTLNTISDGLIETSSGETIDTDCHFMC  231 (368)
Q Consensus       192 l~~~gv~i~~~~~--v~~i~~~~~~v~~~~g~~i~~d~vi~a  231 (368)
                      +++.||+++.+..  +.++...+..+++.+|+++++|++++.
T Consensus        98 ~~~~~I~~~~~~~~~~v~vd~~~~~~~~~~Ge~v~yD~l~vv  139 (141)
T d1fcda2          98 TENAMIEWHPGPDSAVVKVDGGEMMVETAFGDEFKADVINLI  139 (141)
T ss_dssp             TSSCSEEEECSSTTCEEEEEETTTEEEETTCCEEECSEEEEC
T ss_pred             HHhcCceeeecCCceEEeecCCcEEEEeCCCcEEeeeEEEeC
Confidence            7889999998865  445555555899999999999999885

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.12  E-value=0.0006  Score=55.20  Aligned_cols=33  Identities=30%  Similarity=0.444  Sum_probs=28.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRG  173 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~  173 (368)
                      ...++|||+|+.|+++|..+++  .+.+|++++++
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~--~G~~V~liE~~   37 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQ--LGIPTVLVEGQ   37 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHH--HTCCEEEECSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHH--CCCcEEEEecC
Confidence            3579999999999999999986  48999999865

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.00028  Score=48.82  Aligned_cols=35  Identities=23%  Similarity=0.231  Sum_probs=30.8

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      +.++|+|+|.|-+|+++|..|. +|.+|++.|.+..
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            4568999999999999999997 5999999998653

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=0.00047  Score=53.01  Aligned_cols=28  Identities=25%  Similarity=0.124  Sum_probs=23.1

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhc-CCcE
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQS-FADV   41 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~-g~~v   41 (368)
                      ...++|+|||||..|+-+|..+.+ |.++
T Consensus        27 ~~gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          27 PVGNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CCCSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             ccCCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            345799999999999999998875 6543

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.74  E-value=0.00052  Score=53.49  Aligned_cols=34  Identities=18%  Similarity=0.083  Sum_probs=30.8

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      .++|+|||||..|..+|.+|. +|++|+|+||+..
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            468999999999999999998 5999999999864

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=96.64  E-value=0.0056  Score=51.16  Aligned_cols=162  Identities=13%  Similarity=0.028  Sum_probs=91.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc----------c--cC-------------------------
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE----------F--VG-------------------------  181 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~----------~--~~-------------------------  181 (368)
                      ...|+|||+|++|+.+|..|++ ..+.+|+++++++.+..          .  ..                         
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~-~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  111 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISK-NPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKH  111 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHT-STTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred             CCCEEEECCCHHHHHHHHHHHH-ccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCCceecCCccceecc
Confidence            5679999999999999999874 36999999998764310          0  00                         


Q ss_pred             --chhHHHHHHHHHcCCcEEEecceeeecccCCC---eE--------------EcCCCcEEecCEEEEccCCCCCc-hhh
Q 017664          182 --SRASQIALDWLTSKKVEVILNQSVTLNTISDG---LI--------------ETSSGETIDTDCHFMCTGKAMAS-SWL  241 (368)
Q Consensus       182 --~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v--------------~~~~g~~i~~d~vi~a~G~~p~~-~~~  241 (368)
                        ..+...+.+.++..++.+..++.+..+...++   .+              ...++.++.++.++.++|..... ...
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gv~~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~~~~~~~~  191 (278)
T d1rp0a1         112 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATG  191 (278)
T ss_dssp             HHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHH
T ss_pred             cHHHHHHHHHHHHHhCCCEEEeCCcceeeeecCCeEEEEEeccceeeeeecccccccceeeccceEEECcCCCcccccch
Confidence              01122234455677888888877765544333   11              11234579999999999975321 111


Q ss_pred             -hccc-cccccCCCCcEEeCC---------CeeecCCCCeEEecccCCC------CccchHHHHHHHHHHHHHHHHHHH
Q 017664          242 -RETI-LKDSLDGRGRLMVDE---------NLRVRGFKNVFAIGDITDI------PEIKQGYLAQKHALVTAKNLKKLM  303 (368)
Q Consensus       242 -~~~~-l~~~~~~~g~i~vd~---------~~~~~~~~~ifa~GD~~~~------~~~~~~~~a~~~g~~aa~~i~~~l  303 (368)
                       .... ........+....+.         .... ..|++|+.|-....      ..+ ......-+|+.+|+.+.+.|
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~e~~vv~~~~~-~~~g~~~~G~~v~~~~~~~R~~~-~~g~~~~sG~~aA~~~~~~l  268 (278)
T d1rp0a1         192 VKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTRE-VVPGMIVTGMEVAEIDGAPRMGP-TFGAMMISGQKAGQLALKAL  268 (278)
T ss_dssp             HHHHHHTTSSSCCCCCEEECHHHHHHHHHHHCEE-EETTEEECTHHHHHHHTCEECCS-CCHHHHHHHHHHHHHHHHHT
T ss_pred             hhhcccccceeecccccccccccCCceEEEeeeE-EeeCeEEeeeEEeeeccCCccCC-ccchhhccchHHHHHHHHHc
Confidence             1111 000111122223221         1111 26888888743211      011 11234567888888888766

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.0062  Score=48.77  Aligned_cols=94  Identities=22%  Similarity=0.268  Sum_probs=60.9

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc-------------------------------cc----ccCc---
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL-------------------------------LE----FVGS---  182 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~-------------------------------l~----~~~~---  182 (368)
                      .++|||+|+.|+++|..+++  .+.+|.++++...-                               ..    .++.   
T Consensus         5 DviIIG~GpaG~~aA~~aar--~G~kV~vIEk~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAE--LGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVI   82 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCCCCCCCHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCEEEEEeccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccccccccchhhhhh
Confidence            58999999999999999885  58899999865310                               00    0000   


Q ss_pred             ---------hhHHHHHHHHHcCCcEEEecceeeecccCCC-eEEcCCCcEEecCEEEEccCCCCCch
Q 017664          183 ---------RASQIALDWLTSKKVEVILNQSVTLNTISDG-LIETSSGETIDTDCHFMCTGKAMASS  239 (368)
Q Consensus       183 ---------~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~v~~~~g~~i~~d~vi~a~G~~p~~~  239 (368)
                               .+.....+.+++.||+++.+.-..  ..... .+.. ...++.++.+++++|..|..+
T Consensus        83 ~~~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~~--~~~~~~~~~~-~~~~~~~~~~~iatG~~p~vp  146 (221)
T d3grsa1          83 KEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAF--TSDPKPTIEV-SGKKYTAPHILIATGGMPSTP  146 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEE--CSCSSCEEEE-TTEEEECSCEEECCCEEECCC
T ss_pred             hhhhheEEeeeccchhhhhccCceEEEEEeeee--ccccceeeee-eccccccceeEEecCccccCC
Confidence                     111223456788999998775322  11111 3332 335789999999999887643

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.56  E-value=0.0069  Score=42.61  Aligned_cols=74  Identities=19%  Similarity=0.236  Sum_probs=46.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEeEEEEe--
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVSTAVSI--   90 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   90 (368)
                      -+.++|+|||+|.+|+-.|..|.+ ..+++++.+.+.......                       +..... ....+  
T Consensus        30 f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~~~~~~~-----------------------~~~~~~-~i~~~~~   85 (107)
T d2gv8a2          30 FVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQNE-----------------------SLQQVP-EITKFDP   85 (107)
T ss_dssp             GTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCSCBCS-----------------------SEEEEC-CEEEEET
T ss_pred             cCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCccccccc-----------------------cceecC-CeeEEec
Confidence            356899999999999999999985 555566555443211100                       000110 11222  


Q ss_pred             eccEEEecCCeEEE-ecEEEEe
Q 017664           91 TDTEVVTAGGQTFV-YDYVVVA  111 (368)
Q Consensus        91 ~~~~v~~~~g~~~~-~d~lvlA  111 (368)
                      +...+.+.||..+. .|++|+|
T Consensus        86 ~~~~v~~~dG~~~~~vD~Ii~C  107 (107)
T d2gv8a2          86 TTREIYLKGGKVLSNIDRVIYC  107 (107)
T ss_dssp             TTTEEEETTTEEECCCSEEEEC
T ss_pred             CCCEEEEcCCCEEeCCCEEEEC
Confidence            23468888998876 6999886

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.48  E-value=0.00096  Score=52.20  Aligned_cols=33  Identities=27%  Similarity=0.281  Sum_probs=30.0

Q ss_pred             CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      +++.|||+|..|++.|..|. +|++|+++++++.
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~   35 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQ   35 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            58999999999999999997 5999999999753

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=96.45  E-value=0.0061  Score=44.32  Aligned_cols=38  Identities=29%  Similarity=0.443  Sum_probs=33.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCcee
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFE   51 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~   51 (368)
                      -+.++|+|||+|.+.+-.|..|.+ ..+|+|+-+.+.+.
T Consensus        28 ~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~   66 (126)
T d1fl2a2          28 FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK   66 (126)
T ss_dssp             GBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC
T ss_pred             cCCceEEEEeCCHHHHHHHHhhhccCCceEEEecccccc
Confidence            346899999999999999999986 77999999887653

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.33  E-value=0.0014  Score=48.41  Aligned_cols=33  Identities=30%  Similarity=0.336  Sum_probs=29.9

Q ss_pred             CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      ++|+|+|+|.-|...|..|. .|++|+++|+++.
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~   34 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   34 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChh
Confidence            47999999999999999997 5999999999864

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=96.27  E-value=0.0013  Score=48.04  Aligned_cols=37  Identities=32%  Similarity=0.468  Sum_probs=33.1

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCcee
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFE   51 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~   51 (368)
                      +.++|+|||+|-+.+-.|..|.+ ..+|+++-|.+.+.
T Consensus        26 ~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~   63 (126)
T d1trba2          26 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR   63 (126)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccccc
Confidence            56899999999999999999986 78999999988654

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.25  E-value=0.0016  Score=55.93  Aligned_cols=39  Identities=23%  Similarity=0.348  Sum_probs=33.9

Q ss_pred             HhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664          136 VKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL  176 (368)
Q Consensus       136 ~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~  176 (368)
                      ...+|+|+|||+|++|+-+|..|.++  |.+|+++++++++
T Consensus        27 ~~~pkkV~IIGaG~aGLsaA~~L~~~--G~~V~vlE~~~~~   65 (370)
T d2iida1          27 TSNPKHVVIVGAGMAGLSAAYVLAGA--GHQVTVLEASERP   65 (370)
T ss_dssp             CSSCCEEEEECCBHHHHHHHHHHHHH--TCEEEEECSSSSS
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHC--CCCEEEEeCCCCC
Confidence            44579999999999999999999974  8899999987654

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.23  E-value=0.0022  Score=54.16  Aligned_cols=36  Identities=22%  Similarity=0.362  Sum_probs=32.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL  176 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~  176 (368)
                      +|||+|||+|++|+-+|..|++  .+.+|+++++++++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~--~G~~V~vlE~~~~~   36 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKI--HGLNVTVFEAEGKA   36 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT--TSCEEEEECSSSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHh--CCCCEEEEeCCCCC
Confidence            5899999999999999999985  58899999988764

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.13  E-value=0.0026  Score=48.41  Aligned_cols=34  Identities=35%  Similarity=0.405  Sum_probs=30.3

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~   48 (368)
                      .+-+|+|||+|.+|+.|+..+++ |.+|+++|.+.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            46799999999999999998875 99999999864

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.10  E-value=0.011  Score=42.03  Aligned_cols=74  Identities=12%  Similarity=0.034  Sum_probs=52.0

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEc
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIET  217 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~  217 (368)
                      .+++++|||+|.+|..-|..|.+  .+.+|+++.+...          ..+...+++.+++++....-            
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~--~ga~v~v~~~~~~----------~~~~~~~~~~~i~~~~~~~~------------   66 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLE--AGARLTVNALTFI----------PQFTVWANEGMLTLVEGPFD------------   66 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHH--TTBEEEEEESSCC----------HHHHHHHTTTSCEEEESSCC------------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCC----------hHHHHHHhcCCceeeccCCC------------
Confidence            47999999999999999999985  5889999875432          34555666777887754321            


Q ss_pred             CCCcEEecCEEEEccCCCC
Q 017664          218 SSGETIDTDCHFMCTGKAM  236 (368)
Q Consensus       218 ~~g~~i~~d~vi~a~G~~p  236 (368)
                       +.....++.++.+++-..
T Consensus        67 -~~dl~~~~lv~~at~d~~   84 (113)
T d1pjqa1          67 -ETLLDSCWLAIAATDDDT   84 (113)
T ss_dssp             -GGGGTTCSEEEECCSCHH
T ss_pred             -HHHhCCCcEEeecCCCHH
Confidence             111234788888887553

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.06  E-value=0.0027  Score=48.59  Aligned_cols=33  Identities=21%  Similarity=0.099  Sum_probs=29.8

Q ss_pred             CcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCc
Q 017664           17 KKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEY   49 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~   49 (368)
                      ++|+|||+|.-|...|..|.+ |++|++++|++.
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            479999999999999999974 999999999764

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.04  E-value=0.0031  Score=43.22  Aligned_cols=80  Identities=18%  Similarity=0.113  Sum_probs=54.0

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEc
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIET  217 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~  217 (368)
                      ++|+++|+|.|-+|..+|..|.+  .+.+|++.+.+...      +...    .+ +.++.++.+..-            
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~--~g~~v~~~D~~~~~------~~~~----~~-~~~~~~~~~~~~------------   58 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLA--RGVTPRVMDTRMTP------PGLD----KL-PEAVERHTGSLN------------   58 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHH--TTCCCEEEESSSSC------TTGG----GS-CTTSCEEESBCC------------
T ss_pred             CCCEEEEEeECHHHHHHHHHHHH--CCCEEEEeeCCcCc------hhHH----HH-hhccceeecccc------------
Confidence            57899999999999999998885  48899999875432      1111    11 234444433210            


Q ss_pred             CCCcEEecCEEEEccCCCCCchhhhc
Q 017664          218 SSGETIDTDCHFMCTGKAMASSWLRE  243 (368)
Q Consensus       218 ~~g~~i~~d~vi~a~G~~p~~~~~~~  243 (368)
                       +...-.+|.+|+++|..++.++++.
T Consensus        59 -~~~~~~~d~vi~SPGi~~~~~~~~~   83 (93)
T d2jfga1          59 -DEWLMAADLIVASPGIALAHPSLSA   83 (93)
T ss_dssp             -HHHHHHCSEEEECTTSCTTSHHHHH
T ss_pred             -hhhhccCCEEEECCCCCCCCHHHHH
Confidence             0012358999999999988877664

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.02  E-value=0.0034  Score=48.45  Aligned_cols=33  Identities=27%  Similarity=0.255  Sum_probs=29.7

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      +-+|+|||+|.+|+.||..+. .|.+|+++|.+.
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~   62 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA   62 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence            569999999999999998776 599999999875

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.01  E-value=0.0034  Score=47.01  Aligned_cols=38  Identities=26%  Similarity=0.455  Sum_probs=32.1

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHhh-cC--CcEEEEcCCCc
Q 017664           12 GLVEKKKVVVIGGGVGGSLLAYHIQ-SF--ADVVLIDEKEY   49 (368)
Q Consensus        12 ~~~~~~~vvIIGaG~aGl~aA~~L~-~g--~~v~lie~~~~   49 (368)
                      .|+++++|.|||+|..|.++|+.|. ++  .++.|+|.++.
T Consensus         1 sm~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~   41 (146)
T d1ez4a1           1 SMPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKD   41 (146)
T ss_dssp             CBTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccc
Confidence            3677889999999999999999887 34  58999998753

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=95.95  E-value=0.011  Score=47.53  Aligned_cols=36  Identities=22%  Similarity=0.341  Sum_probs=28.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCc
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEY   49 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~   49 (368)
                      -+.++|+|||+|.+|+-+|..|.+ +.+++++-+...
T Consensus        30 ~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~   66 (235)
T d1w4xa2          30 FSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH   66 (235)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhhhccccccccccc
Confidence            357899999999999999999974 777776655543

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.87  E-value=0.0024  Score=47.06  Aligned_cols=33  Identities=27%  Similarity=0.306  Sum_probs=29.8

Q ss_pred             CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      ++++|||+|..|...|..|. .|++|+++|+++.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~   34 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEE   34 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHH
Confidence            46899999999999999997 5999999999863

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=95.79  E-value=0.0058  Score=46.19  Aligned_cols=39  Identities=38%  Similarity=0.451  Sum_probs=31.5

Q ss_pred             cCCCCCCcEEEECCChHHHHHHHHhh-cC-CcEEEEcCCCc
Q 017664           11 AGLVEKKKVVVIGGGVGGSLLAYHIQ-SF-ADVVLIDEKEY   49 (368)
Q Consensus        11 ~~~~~~~~vvIIGaG~aGl~aA~~L~-~g-~~v~lie~~~~   49 (368)
                      +.|.++++|.|||+|..|.++|..|. .+ .++.|+|.++.
T Consensus         2 ~~~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~   42 (154)
T d1pzga1           2 ALVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG   42 (154)
T ss_dssp             CCCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             ccccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccc
Confidence            34567889999999999999998776 34 48999997763

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.75  E-value=0.0057  Score=52.21  Aligned_cols=38  Identities=21%  Similarity=0.414  Sum_probs=33.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE  178 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~  178 (368)
                      .|+|+|||+|.+|+-+|..|++  .+.+|+++++++++..
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k--~G~~V~viEk~~~iGG   39 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAE--KGHQVHIIDQRDHIGG   39 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSSSSG
T ss_pred             CCEEEEECCcHHHHHHHHHHHh--CCCCEEEEECCCCCcC
Confidence            5899999999999999999985  4889999999987653

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.73  E-value=0.0026  Score=47.93  Aligned_cols=33  Identities=24%  Similarity=0.491  Sum_probs=29.3

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEK   47 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~   47 (368)
                      +.++++|||||..|+.-|..|.+ |.+|+||.++
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            56899999999999999998874 9999999754

>d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.69  E-value=0.00054  Score=49.59  Aligned_cols=50  Identities=20%  Similarity=0.156  Sum_probs=37.1

Q ss_pred             ccccCCCeEEEeecCCcce--------eEecCcc-----ccCccceeeeccccchhHHHHHcCCCC
Q 017664          313 TYKPGYPIALVSLGRREGV--------AHFPFLT-----ISGRIPGWIKSRDLFVGKTRKQLGLKP  365 (368)
Q Consensus       313 ~~~~~~~~~~~~~g~~~~~--------~~~~~~~-----~~~~~~~~~k~~~~~~~~~~~~lG~~~  365 (368)
                      .|+ .|+++.+|++++++.        ..+++..     ..+...|++|+  ++++++++|||+|+
T Consensus         8 vft-~PeiA~vGlte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~vKl--v~d~~~~~ilGa~i   70 (118)
T d1xdia2           8 VFT-RPEIAAVGVPQSVIDAGSVAARTIMLPLRTNARAKMSEMRHGFVKI--FCRRSTGVVIGGVV   70 (118)
T ss_dssp             ECS-SSEEEEEESCHHHHHHTSSCEEEEEEESTTSHHHHHTTCSSCEEEE--EEETTTCBEEEEEE
T ss_pred             ecC-CChheeehhhHHHHHhCcccceeeeecccchhhhhhcccchhheEE--EEecCCCceEEEEE
Confidence            343 688999999877663        2233322     35667899999  99999999999986

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=95.67  E-value=0.0032  Score=49.45  Aligned_cols=38  Identities=29%  Similarity=0.349  Sum_probs=32.4

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           12 GLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        12 ~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      .++.+.+|+|||+|.-|.+.|..|. +|++|++..+++.
T Consensus         3 ~~~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~   41 (189)
T d1n1ea2           3 ELLYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEE   41 (189)
T ss_dssp             CCCCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHH
T ss_pred             ccceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHH
Confidence            3455678999999999999999998 4889999998754

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.58  E-value=0.0056  Score=43.58  Aligned_cols=34  Identities=15%  Similarity=0.138  Sum_probs=30.2

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      +.++|+|||+|..|..-|..|. .|.+|+++++..
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~   45 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            4679999999999999999887 499999998765

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.53  E-value=0.0089  Score=43.00  Aligned_cols=39  Identities=13%  Similarity=0.262  Sum_probs=32.2

Q ss_pred             cCCCCCCcEEEECCCh-----------HHHHHHHHhhc-CCcEEEEcCCCc
Q 017664           11 AGLVEKKKVVVIGGGV-----------GGSLLAYHIQS-FADVVLIDEKEY   49 (368)
Q Consensus        11 ~~~~~~~~vvIIGaG~-----------aGl~aA~~L~~-g~~v~lie~~~~   49 (368)
                      |+..+.++|+|||+||           ++..|++.|++ |++++++..++.
T Consensus         2 p~~~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~   52 (127)
T d1a9xa3           2 PKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA   52 (127)
T ss_dssp             CCCSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred             CCCCCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence            4445678999999986           77888888885 999999999874

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.38  E-value=0.014  Score=41.12  Aligned_cols=41  Identities=22%  Similarity=0.231  Sum_probs=35.0

Q ss_pred             CCcCCCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCc
Q 017664            9 TAAGLVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEY   49 (368)
Q Consensus         9 ~~~~~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~   49 (368)
                      .+|..+..++|.|||||.=|...|...++ |+++.++|+++.
T Consensus         4 ~~~~~~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2           4 GTALRPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             CCTTSTTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCCCCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            34555566799999999999999999886 999999999875

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.0075  Score=51.62  Aligned_cols=37  Identities=22%  Similarity=0.418  Sum_probs=32.6

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL  176 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~  176 (368)
                      +..+|+|||+|.+|+-+|..|.+  .|.+|+++++++++
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~--~G~~V~VlEa~~r~   40 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQS--FGMDVTLLEARDRV   40 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHH--TTCEEEEECSSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCCCC
Confidence            45789999999999999999986  48899999988765

>d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.28  E-value=0.00087  Score=48.84  Aligned_cols=47  Identities=26%  Similarity=0.337  Sum_probs=36.0

Q ss_pred             CCCeEEEeecCCccee--------EecCc-----cccCccceeeeccccchhHHHHHcCCCC
Q 017664          317 GYPIALVSLGRREGVA--------HFPFL-----TISGRIPGWIKSRDLFVGKTRKQLGLKP  365 (368)
Q Consensus       317 ~~~~~~~~~g~~~~~~--------~~~~~-----~~~~~~~~~~k~~~~~~~~~~~~lG~~~  365 (368)
                      .|+++.+|++++++..        .+++.     ...+...|++|+  ++++++++|||+|+
T Consensus        11 ~PeiA~VGlte~eA~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kl--i~d~~~~~ilGa~i   70 (123)
T d1v59a3          11 HPEVAWVGKTEEQLKEAGIDYKIGKFPFAANSRAKTNQDTEGFVKI--LIDSKTERILGAHI   70 (123)
T ss_dssp             SSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEE--EEETTTCBEEEEEE
T ss_pred             CCccEEEECCHHHHHhcccCceEEEEecccccchhccCCCcEEEEE--EEECCCCEEEEEEE
Confidence            5889999998776632        23332     145677899999  99999999999986

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.24  E-value=0.0071  Score=47.96  Aligned_cols=33  Identities=18%  Similarity=0.233  Sum_probs=29.4

Q ss_pred             CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      ++|.|||.|..|+..|..|+ +|++|+.+|.++.
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~   34 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSST   34 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHH
Confidence            36999999999999999987 6999999998753

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.23  E-value=0.0086  Score=53.77  Aligned_cols=56  Identities=11%  Similarity=-0.037  Sum_probs=45.6

Q ss_pred             chhHHHHHHHHHcCCcEEEecceeeecccC--CC---eEEcCCCcEEecCEEEEccCCCCC
Q 017664          182 SRASQIALDWLTSKKVEVILNQSVTLNTIS--DG---LIETSSGETIDTDCHFMCTGKAMA  237 (368)
Q Consensus       182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~--~~---~v~~~~g~~i~~d~vi~a~G~~p~  237 (368)
                      .++.+.+-+...-.|-.+.+++.|..+..+  ++   .+.+.+|+++.++.+|....+.|.
T Consensus       376 gEipQ~FcR~~AV~Gg~Y~L~~~i~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~psy~p~  436 (491)
T d1vg0a1         376 GELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSE  436 (491)
T ss_dssp             THHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCT
T ss_pred             chHHHHHHHHHHhcCcEEEcCCccceEEEecCCCeEEEEEccCCcEEecCeEEECHHhCCc
Confidence            477788888888899999999999988653  33   567889999999999998776654

>d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.18  E-value=0.00095  Score=48.60  Aligned_cols=47  Identities=15%  Similarity=0.278  Sum_probs=36.2

Q ss_pred             CCCeEEEeecCCccee--------EecCcc-----ccCccceeeeccccchhHHHHHcCCCC
Q 017664          317 GYPIALVSLGRREGVA--------HFPFLT-----ISGRIPGWIKSRDLFVGKTRKQLGLKP  365 (368)
Q Consensus       317 ~~~~~~~~~g~~~~~~--------~~~~~~-----~~~~~~~~~k~~~~~~~~~~~~lG~~~  365 (368)
                      .|+++.+|+++++|..        .+++..     ..+...|++|+  ++++++++|||+|+
T Consensus        11 ~PeiA~VGlte~eA~~~g~~~~v~~~~~~~~~ra~~~~~~~g~vkl--v~d~~t~~ILG~~i   70 (123)
T d1lvla3          11 DPEVVVVGKTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGFVRV--VARRDNHLILGWQA   70 (123)
T ss_dssp             SSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEE--EEETTTCBEEEEEE
T ss_pred             CCccEEEECCHHHHhhcchhhhcceeeccccccceecCcchhheee--eeecccccceEEEE
Confidence            5889999999877643        223221     35677899999  99999999999986

>d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.14  E-value=0.0012  Score=48.43  Aligned_cols=48  Identities=21%  Similarity=0.243  Sum_probs=37.0

Q ss_pred             CCCeEEEeecCCccee--------EecCcc-----ccCccceeeeccccchhHHHHHcCCCCC
Q 017664          317 GYPIALVSLGRREGVA--------HFPFLT-----ISGRIPGWIKSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       317 ~~~~~~~~~g~~~~~~--------~~~~~~-----~~~~~~~~~k~~~~~~~~~~~~lG~~~~  366 (368)
                      .|+++.+|+++++|..        .+++..     ..+...|++|+  ++++++++|||+|+.
T Consensus        11 ~PeiA~VGlte~~A~~~g~~~~v~~~~~~~~~ra~~~~~~~g~~Kl--i~d~~~g~iLGa~iv   71 (128)
T d1ojta3          11 SPEVAWVGETELSAKASARKITKANFPWAASGRAIANGCDKPFTKL--IFDAETGRIIGGGIV   71 (128)
T ss_dssp             SSCEEEEECCHHHHHHHTCCEEEEEEEGGGCHHHHHTTCCSCEEEE--EEETTTCBEEEEEEE
T ss_pred             CCceeeeeccHHHHHHcCCCcccceeeccchhhHHhcCCccceEEE--EEeCCCCeEEEEEEE
Confidence            6899999998877642        333322     35677899999  999999999999863

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=95.13  E-value=0.011  Score=48.25  Aligned_cols=35  Identities=26%  Similarity=0.324  Sum_probs=30.6

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      ..++|+|||+|.+|+-+|..|++  .+.+|+++++..
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~--~G~~V~vier~~   39 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILAR--KGYSVHILARDL   39 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHH--CCCCEEEEeCCC
Confidence            35789999999999999999996  477999999853

>d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.13  E-value=0.001  Score=47.77  Aligned_cols=48  Identities=17%  Similarity=0.209  Sum_probs=36.4

Q ss_pred             CCCeEEEeecCCccee--------EecCcc-----ccCccceeeeccccchhHHHHHcCCCCC
Q 017664          317 GYPIALVSLGRREGVA--------HFPFLT-----ISGRIPGWIKSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       317 ~~~~~~~~~g~~~~~~--------~~~~~~-----~~~~~~~~~k~~~~~~~~~~~~lG~~~~  366 (368)
                      .|+++.+|++++++..        .+++..     ..+...|++|+  ++++++++|||+|+.
T Consensus         9 ~PeiA~VGlte~ea~~~g~~~~v~~~~~~~~~ra~~~~~~~G~vKl--i~~~~~~~iLG~~iv   69 (115)
T d1ebda3           9 DPECASVGYFEQQAKDEGIDVIAAKFPFAANGRALALNDTDGFLKL--VVRKEDGVIIGAQII   69 (115)
T ss_dssp             SSCEEEEECCHHHHHTTTCCEEEEEEEGGGCHHHHHHTCCCCEEEE--EEETTTTEEEEEEEE
T ss_pred             CCceEEEeCCHHHHhhhhhhhhccceecccceeeeecCCCcEEEEE--EEeCCcceEEEEEEE
Confidence            6899999999887642        223222     35567899999  999999999999863

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.02  E-value=0.008  Score=47.35  Aligned_cols=33  Identities=24%  Similarity=0.286  Sum_probs=29.8

Q ss_pred             CcEEEECCChHHHHHHHHhhcCCcEEEEcCCCc
Q 017664           17 KKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEY   49 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~~g~~v~lie~~~~   49 (368)
                      ++|.|||.|..|+..|..+++|++|+.+|-++.
T Consensus         1 MkI~ViGlG~vGl~~a~~~a~g~~V~g~Din~~   33 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLSLQNEVTIVDILPS   33 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTSEEEEECSCHH
T ss_pred             CEEEEECCChhHHHHHHHHHCCCcEEEEECCHH
Confidence            469999999999999988888999999998864

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.02  E-value=0.01  Score=48.69  Aligned_cols=34  Identities=18%  Similarity=0.478  Sum_probs=29.6

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCC-CeEEEEecCccc
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPD-KKVILVHRGPKL  176 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~-~~v~~i~~~~~~  176 (368)
                      +|+|||+|++|+-+|..|.++  + .+|+++++++++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~--G~~~V~vlE~~~~~   36 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEA--GITDLLILEATDHI   36 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHT--TCCCEEEECSSSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhC--CCCcEEEEECCCCC
Confidence            699999999999999999863  6 479999998765

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.00  E-value=0.0095  Score=46.77  Aligned_cols=34  Identities=41%  Similarity=0.506  Sum_probs=30.2

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      -++|.|||+|.-|...|..++ .|++|+++|+++.
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            468999999999999998776 6999999999874

>d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.00079  Score=48.41  Aligned_cols=48  Identities=21%  Similarity=0.278  Sum_probs=36.3

Q ss_pred             CCCeEEEeecCCcceeE----------ecCc-----cccCccceeeeccccchhHHHHHcCCCCC
Q 017664          317 GYPIALVSLGRREGVAH----------FPFL-----TISGRIPGWIKSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       317 ~~~~~~~~~g~~~~~~~----------~~~~-----~~~~~~~~~~k~~~~~~~~~~~~lG~~~~  366 (368)
                      .|+++.+|+++++|..+          +++.     ...+...|++|+  ++++++++|||+|+.
T Consensus        11 ~PeiA~VGltE~eA~~~~~~~~v~~~~~~~~~~~~a~~~~~~~g~~k~--i~~~~~~~ilG~~iv   73 (115)
T d3grsa3          11 HPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKM--VCANKEEKVVGIHMQ   73 (115)
T ss_dssp             SSCEEEEECCHHHHHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEE--EEETTTTEEEEEEEE
T ss_pred             cCccEEEecCcHHHHHHhCCcccceeEeeeeecchhhcccccceeEEE--EEecCCceEEEEEEe
Confidence            58999999998877433          1111     135666799999  999999999999863

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=94.84  E-value=0.02  Score=49.08  Aligned_cols=38  Identities=34%  Similarity=0.547  Sum_probs=31.6

Q ss_pred             CeEEEEcCchhHHHHHHHHhh---hCCCCeEEEEecCcccc
Q 017664          140 NSVLIVGGGPTGVELAGEIAV---DFPDKKVILVHRGPKLL  177 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~---~~~~~~v~~i~~~~~~l  177 (368)
                      -.|+|||+|++|+-+|..|++   +..|.+|+++++.+.+.
T Consensus         8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~   48 (360)
T d1pn0a1           8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV   48 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence            469999999999999999974   24688999999887653

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=94.82  E-value=0.012  Score=49.04  Aligned_cols=34  Identities=26%  Similarity=0.564  Sum_probs=30.5

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL  176 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~  176 (368)
                      +|+|||+|++|+.+|..|.+  .+.+|+++++++++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~--~G~~V~vlE~~~~~   35 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRS--RGTDAVLLESSARL   35 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHT--TTCCEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCC
Confidence            69999999999999999996  48899999998765

>d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.69  E-value=0.0013  Score=47.86  Aligned_cols=47  Identities=28%  Similarity=0.330  Sum_probs=35.0

Q ss_pred             CCCeEEEeecCCccee--------EecCcc-----ccCccceeeeccccchhHHHHHcCCCC
Q 017664          317 GYPIALVSLGRREGVA--------HFPFLT-----ISGRIPGWIKSRDLFVGKTRKQLGLKP  365 (368)
Q Consensus       317 ~~~~~~~~~g~~~~~~--------~~~~~~-----~~~~~~~~~k~~~~~~~~~~~~lG~~~  365 (368)
                      .|+++.+|++++++..        .+++..     ..+...|++|+  ++++++++|||+|+
T Consensus        11 ~PeiA~VGlte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~vKl--v~d~~t~~ILGa~i   70 (124)
T d3lada3          11 HPEIAGVGKTEQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKV--IADAKTDRVLGVHV   70 (124)
T ss_dssp             SSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEEE--EEETTTCBEEEEEE
T ss_pred             cCceeEeehhHHHHhhcccccEEEEEECccCcchhhcCCCCeEEEE--EEECCCCEEEEEEE
Confidence            5889999998776532        222221     34667899999  99999999999986

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=94.66  E-value=0.023  Score=42.53  Aligned_cols=35  Identities=26%  Similarity=0.485  Sum_probs=30.7

Q ss_pred             CCCcEEEEC-CChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           15 EKKKVVVIG-GGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        15 ~~~~vvIIG-aG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      +..+|.||| .|.-|.+.|..|+ .|++|.++|++..
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~   44 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   44 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc
Confidence            456899999 6999999999998 5999999998753

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=94.45  E-value=0.028  Score=39.80  Aligned_cols=35  Identities=14%  Similarity=0.356  Sum_probs=30.0

Q ss_pred             CCCcEEEECCC-----------hHHHHHHHHhhc-CCcEEEEcCCCc
Q 017664           15 EKKKVVVIGGG-----------VGGSLLAYHIQS-FADVVLIDEKEY   49 (368)
Q Consensus        15 ~~~~vvIIGaG-----------~aGl~aA~~L~~-g~~v~lie~~~~   49 (368)
                      ..++|+|||+|           +++..|++.|++ |++++++..|+.
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            46789999998           478888889985 999999999874

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.39  E-value=0.019  Score=48.37  Aligned_cols=36  Identities=28%  Similarity=0.426  Sum_probs=31.8

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE  178 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~  178 (368)
                      .++|||+|.+|+-+|..|++  .+.+|+++++++++..
T Consensus         3 dv~IIGaG~sGl~~A~~L~~--~g~~V~iiEk~~~iGG   38 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKK--LNKKVLVIEKRNHIGG   38 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGG--GTCCEEEECSSSSSSG
T ss_pred             cEEEECCcHHHHHHHHHHHh--CCCcEEEEECCCCccc
Confidence            58999999999999999986  3789999999987654

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.37  E-value=0.022  Score=42.53  Aligned_cols=34  Identities=24%  Similarity=0.426  Sum_probs=29.9

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRG  173 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~  173 (368)
                      .+++++|||||..|.+-+..|.+  .|.+|+++.+.
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~--~GA~VtVvap~   45 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMP--TGCKLTLVSPD   45 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGG--GTCEEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCC
Confidence            48999999999999999999986  48999999643

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.30  E-value=0.019  Score=46.33  Aligned_cols=36  Identities=28%  Similarity=0.424  Sum_probs=31.5

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL  177 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l  177 (368)
                      -.|+|||+|.+|+-+|..|++  .|.+|+++++++++.
T Consensus         6 yDviViGaG~~Gl~~A~~La~--~G~~V~vlE~~~~~G   41 (297)
T d2bcgg1           6 YDVIVLGTGITECILSGLLSV--DGKKVLHIDKQDHYG   41 (297)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHH--CCCCEEEEcCCCCCC
Confidence            358999999999999999996  488999999988654

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=94.13  E-value=0.017  Score=44.92  Aligned_cols=35  Identities=26%  Similarity=0.428  Sum_probs=29.8

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      +-.+|.|||+|.-|...|..+. .|++|+++|+++.
T Consensus         3 ~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (186)
T d1wdka3           3 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH   38 (186)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            3467999999999999987654 6999999999864

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=94.04  E-value=0.023  Score=43.09  Aligned_cols=32  Identities=22%  Similarity=0.268  Sum_probs=28.7

Q ss_pred             CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      ++|.|||.|.-|.+.|..|+ +|++|+++|+++
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            36999999999999999997 599999999875

>d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.02  E-value=0.0033  Score=46.77  Aligned_cols=48  Identities=29%  Similarity=0.447  Sum_probs=35.7

Q ss_pred             CCCeEEEeecCCcceeE--------ecCcc---------------------ccCccceeeeccccchhHHHHHcCCCCC
Q 017664          317 GYPIALVSLGRREGVAH--------FPFLT---------------------ISGRIPGWIKSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       317 ~~~~~~~~~g~~~~~~~--------~~~~~---------------------~~~~~~~~~k~~~~~~~~~~~~lG~~~~  366 (368)
                      .|+++.||+++++|...        ++...                     ..+...|++|+  ++++++++|||+|+.
T Consensus        11 ~PeiA~VGlTe~eA~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~vKl--v~d~~t~~IlGa~iv   87 (140)
T d1mo9a3          11 HYEVSFLGMGEEEARAAGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKI--VIDAKTRKVLGAHHV   87 (140)
T ss_dssp             SSEEEEEECCHHHHHHTTCCEEEEEESCCSTTTTCSSCSCCTTTHHHHHSTTTGGGGCEEEE--EEETTTCBEEEEEEE
T ss_pred             CCccEEEECCHHHHHHcCCCeEEEEEeecccccceeeeeeccchhhhhhhhhcCCCCceEEE--EEecCCCcEEEEEEE
Confidence            68999999998877432        22111                     23456789999  999999999999863

>d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.02  E-value=0.0023  Score=46.50  Aligned_cols=47  Identities=23%  Similarity=0.309  Sum_probs=35.6

Q ss_pred             CCCeEEEeecCCccee--------EecCcc-----ccCccceeeeccccchhHHHHHcCCCC
Q 017664          317 GYPIALVSLGRREGVA--------HFPFLT-----ISGRIPGWIKSRDLFVGKTRKQLGLKP  365 (368)
Q Consensus       317 ~~~~~~~~~g~~~~~~--------~~~~~~-----~~~~~~~~~k~~~~~~~~~~~~lG~~~  365 (368)
                      .|+++.+|+++++|..        .+++..     ..+...|++|+  ++++++++|||+|+
T Consensus        11 ~PeiA~vGlte~~A~~~g~~~~~~~~~~~~~~ra~~~~~~~G~~Kl--v~d~~~~~ilG~~i   70 (123)
T d1dxla3          11 NPEVASVGKTEEQVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKI--IAEKETDKILGVHI   70 (123)
T ss_dssp             SSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHSCCCCEEEE--EEETTTCBEEEEEE
T ss_pred             CCceEEEECCHHHHHHcCCCEEEEEEeccccchhhhcCCCcceEEE--EEECCCCEEEEEEE
Confidence            5889999998776642        223221     35667899999  99999999999986

>d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.01  E-value=0.0028  Score=46.25  Aligned_cols=48  Identities=15%  Similarity=0.164  Sum_probs=35.2

Q ss_pred             CCCeEEEeecCCccee--------EecC----ccccCccceeeeccccchhHHHHHcCCCCC
Q 017664          317 GYPIALVSLGRREGVA--------HFPF----LTISGRIPGWIKSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       317 ~~~~~~~~~g~~~~~~--------~~~~----~~~~~~~~~~~k~~~~~~~~~~~~lG~~~~  366 (368)
                      +++++.+|+++++|..        .+..    ....+...+++|+  ++++++++|||+|+.
T Consensus        12 d~eiasvGlte~eA~~~g~~~~~~~~~~~~~~~~~~~~~~g~~Kl--i~d~~t~~IlG~~iv   71 (126)
T d1nhpa3          12 DYKFASTGINEVMAQKLGKETKAVTVVEDYLMDFNPDKQKAWFKL--VYDPETTQILGAQLM   71 (126)
T ss_dssp             TEEEEEEECCHHHHHHHTCCCEEEEEEEESSCTTCTTCCEEEEEE--EECTTTCBEEEEEEE
T ss_pred             CccEEEecccHHHHHHCCCCEEEEEEecCcchhhcCCCcceeEEE--EEECCCCCEEEEEEE
Confidence            4688999998887632        1111    1234666789999  999999999999863

>d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=93.89  E-value=0.0017  Score=46.55  Aligned_cols=48  Identities=25%  Similarity=0.344  Sum_probs=35.7

Q ss_pred             CCCeEEEeecCCcceeE----------ecCc-----cccCccceeeeccccchhHHHHHcCCCCC
Q 017664          317 GYPIALVSLGRREGVAH----------FPFL-----TISGRIPGWIKSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       317 ~~~~~~~~~g~~~~~~~----------~~~~-----~~~~~~~~~~k~~~~~~~~~~~~lG~~~~  366 (368)
                      .|+++.||+++++|..+          +++.     ...+...|++|+  ++++++++|||+|+.
T Consensus        11 ~PeiA~VGlte~eA~~~~~~~~v~~~~~~~~~~~~a~~~~~~~g~~k~--v~~~~~~~IlGa~iv   73 (115)
T d1gesa3          11 HPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKL--VCVGSEEKIVGIHGI   73 (115)
T ss_dssp             SSCEEEEECCHHHHHHHHCGGGEEEEEEEEECHHHHTSSSCCEEEEEE--EEETTTTEEEEEEEE
T ss_pred             CCccEEEeCCHHHHHHHcCCcccceeeeecccccccceeccccceEEE--EEecCCcEEEEEEEE
Confidence            58899999998776432          1221     134566789999  999999999999863

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=93.84  E-value=0.05  Score=40.95  Aligned_cols=35  Identities=31%  Similarity=0.391  Sum_probs=29.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCC--cEEEEcCCC
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFA--DVVLIDEKE   48 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~--~v~lie~~~   48 (368)
                      ..+++|.|||+|..|.++|+.|. ++.  ++.|+|.++
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            34679999999999999999987 454  899999875

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.78  E-value=0.03  Score=41.68  Aligned_cols=37  Identities=32%  Similarity=0.459  Sum_probs=30.2

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cC--CcEEEEcCCCc
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SF--ADVVLIDEKEY   49 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g--~~v~lie~~~~   49 (368)
                      .+...+|.|||+|..|.++|+.|. ++  .++.|+|.++.
T Consensus         3 ~~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~   42 (148)
T d1ldna1           3 NNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANES   42 (148)
T ss_dssp             TTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccc
Confidence            445678999999999999999886 34  47999998753

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=93.77  E-value=0.03  Score=42.68  Aligned_cols=34  Identities=26%  Similarity=0.156  Sum_probs=29.5

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      ...+|+|+|+|+.|+.++..++ .|.+|+++|+++
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            3457999999999999998887 599999999875

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.75  E-value=0.03  Score=42.76  Aligned_cols=34  Identities=29%  Similarity=0.244  Sum_probs=29.0

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFA-DVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~-~v~lie~~~   48 (368)
                      ....|+|+|+|+.|+.++..++ .|. +|+++|+++
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            3457999999999999998887 587 799999875

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.74  E-value=0.028  Score=44.98  Aligned_cols=35  Identities=34%  Similarity=0.455  Sum_probs=30.1

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL  176 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~  176 (368)
                      -.++|||+|+.|+.+|..+++  .+.+|.++++.+.+
T Consensus         6 yDviVIG~GpAGl~aA~~aa~--~G~kV~lie~~~~~   40 (233)
T d1v59a1           6 HDVVIIGGGPAGYVAAIKAAQ--LGFNTACVEKRGKL   40 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSS
T ss_pred             cCEEEECCCHHHHHHHHHHHH--CCCcEEEEEecCCc
Confidence            468999999999999999985  58999999977543

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.52  E-value=0.042  Score=41.79  Aligned_cols=36  Identities=25%  Similarity=0.157  Sum_probs=30.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      .....|+|+|+|+.|+.++..++ .|.+|+++++++.
T Consensus        26 ~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          26 GPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CCCCEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            34568999999999999988776 5999999998764

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.46  E-value=0.046  Score=39.63  Aligned_cols=39  Identities=26%  Similarity=0.407  Sum_probs=34.3

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCcee
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFE   51 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~   51 (368)
                      .-+.++|+|||+|-+.+-.|.+|.+ -.+|++|-|.+.+.
T Consensus        31 ~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~r   70 (130)
T d1vdca2          31 IFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR   70 (130)
T ss_dssp             GGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCC
T ss_pred             HhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccccc
Confidence            4467899999999999999999986 78899999988764

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.45  E-value=0.036  Score=41.98  Aligned_cols=35  Identities=20%  Similarity=0.080  Sum_probs=29.8

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      ....+|+|+|+|+.|+.++..++ .|.+|+++++++
T Consensus        26 ~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          26 RPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            34567999999999999998777 599999999875

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.39  E-value=0.032  Score=43.61  Aligned_cols=37  Identities=30%  Similarity=0.525  Sum_probs=32.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL  177 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l  177 (368)
                      -++|.|||+|..|..+|..++.  .|.+|+++++.+..+
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~--~G~~V~l~D~~~~~l   40 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAA--TGHTVVLVDQTEDIL   40 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHH
T ss_pred             eEEEEEECcCHHHHHHHHHHHh--CCCcEEEEECChHHH
Confidence            3799999999999999998885  589999999887644

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=93.38  E-value=0.038  Score=45.07  Aligned_cols=36  Identities=28%  Similarity=0.471  Sum_probs=30.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL  176 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~  176 (368)
                      ...|+|||+|++|+-+|..+++  .+.+|.++++++.+
T Consensus         4 ~~DViIIGaG~aGl~aA~~la~--~G~~V~vlEk~~~~   39 (253)
T d2gqfa1           4 YSENIIIGAGAAGLFCAAQLAK--LGKSVTVFDNGKKI   39 (253)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCC
Confidence            3579999999999999999986  47899999988653

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.26  E-value=0.045  Score=43.37  Aligned_cols=35  Identities=34%  Similarity=0.451  Sum_probs=30.4

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL  176 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~  176 (368)
                      -.++|||+|++|+.+|..+++  .+.+|.++++++.+
T Consensus         4 yDvvVIGgGpaGl~aA~~aa~--~G~kV~vie~~~~~   38 (221)
T d1dxla1           4 NDVVIIGGGPGGYVAAIKAAQ--LGFKTTCIEKRGAL   38 (221)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH--HTCCEEEEECSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHH--CCCcEEEEEecCCC
Confidence            468999999999999999986  48899999987654

>d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=93.19  E-value=0.0032  Score=45.40  Aligned_cols=48  Identities=21%  Similarity=0.267  Sum_probs=34.0

Q ss_pred             CCCeEEEeecCCcceeEe------------cCc-------cccCccceeeeccccchhHHHHHcCCCCC
Q 017664          317 GYPIALVSLGRREGVAHF------------PFL-------TISGRIPGWIKSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       317 ~~~~~~~~~g~~~~~~~~------------~~~-------~~~~~~~~~~k~~~~~~~~~~~~lG~~~~  366 (368)
                      .|+++.||+++++|....            ...       ...+...+++|+  ++++++++|||+|+.
T Consensus        11 ~PeiA~VGlte~~A~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~kl--i~~~~~~~IlGa~iv   77 (119)
T d1onfa3          11 HPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKL--VCVGKDELIKGLHII   77 (119)
T ss_dssp             SSCEEEEECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEE--EEETTTTEEEEEEEE
T ss_pred             CCccEEEECCHHHHHHhcccccccccccccCccccchhhhhhccCCCceEEE--EEecCCCcEEEEEEe
Confidence            689999999887764321            110       122344589999  999999999999863

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.11  E-value=0.042  Score=42.39  Aligned_cols=31  Identities=23%  Similarity=0.309  Sum_probs=27.7

Q ss_pred             CcEEEECCChHHHHHHHHhh-cCCcEEEEcCC
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEK   47 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~   47 (368)
                      ++|.|||+|.-|.+.|..|. +|++|++..+.
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            47999999999999999997 59999999764

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.08  E-value=0.043  Score=46.68  Aligned_cols=59  Identities=19%  Similarity=0.238  Sum_probs=42.3

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-----------cC------chhHHHHHHHHHcCCcEEEe
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF-----------VG------SRASQIALDWLTSKKVEVIL  201 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~-----------~~------~~~~~~~~~~l~~~gv~i~~  201 (368)
                      .|+|||+|.+|+-+|..|.+  .|.+|+++++++++...           ++      ......+.+.+++.|++...
T Consensus         1 DViVIGaG~aGL~aA~~L~~--~G~~V~VlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~   76 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHD--SGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGLETYK   76 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHH--TTCCEEEEESSSSSBTTCCEECCTTTSCEESSCCEECTTCHHHHHHHHHTTCCEEE
T ss_pred             CEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCCcceeeEEECCCCcEEeCCceEeCCCChHHHHHHHHcCCccee
Confidence            38999999999999999996  48899999987754210           00      01234566777888876543

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=92.92  E-value=0.056  Score=42.72  Aligned_cols=32  Identities=22%  Similarity=0.424  Sum_probs=28.3

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      .++|||+|+.|+++|..+++  .+.+|.+++++.
T Consensus         4 DvvVIG~G~aG~~aA~~a~~--~G~kV~iiE~~~   35 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAM--YGQKCALIEAKE   35 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHT--TTCCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCEEEEEeccC
Confidence            58999999999999999984  589999999753

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=92.84  E-value=0.051  Score=40.28  Aligned_cols=33  Identities=33%  Similarity=0.392  Sum_probs=27.7

Q ss_pred             CcEEEECCChHHHHHHHHhh-cC--CcEEEEcCCCc
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SF--ADVVLIDEKEY   49 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g--~~v~lie~~~~   49 (368)
                      ++|.|||+|..|.++|+.|. ++  .++.|+|.++.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~   37 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEA   37 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccc
Confidence            58999999999999999886 44  48999998653

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=92.80  E-value=0.056  Score=39.81  Aligned_cols=33  Identities=39%  Similarity=0.495  Sum_probs=27.6

Q ss_pred             CcEEEECCChHHHHHHHHhh-cC-CcEEEEcCCCc
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SF-ADVVLIDEKEY   49 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g-~~v~lie~~~~   49 (368)
                      .+|.|||+|..|.++|..|. ++ .++.++|.++.
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~   36 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEG   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccc
Confidence            58999999999999999886 34 48999997663

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=92.78  E-value=0.051  Score=43.94  Aligned_cols=34  Identities=38%  Similarity=0.704  Sum_probs=29.7

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL  176 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~  176 (368)
                      .|+|||+|++|+-+|..|++  .+.+|.++++++.+
T Consensus         4 DViIIGaG~aGl~aA~~la~--~G~~V~liEk~~~~   37 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAE--EGANVLLLDKGNKL   37 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCC
Confidence            58999999999999999986  48899999987643

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=92.75  E-value=0.064  Score=39.50  Aligned_cols=33  Identities=33%  Similarity=0.497  Sum_probs=26.8

Q ss_pred             CcEEEECCChHHHHHHHHhh-cC--CcEEEEcCCCc
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SF--ADVVLIDEKEY   49 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g--~~v~lie~~~~   49 (368)
                      .+|.|||+|..|.++|+.|. ++  .++.|+|.++.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            58999999999999999886 43  48999997764

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=92.74  E-value=0.067  Score=40.67  Aligned_cols=35  Identities=23%  Similarity=0.242  Sum_probs=30.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK  175 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~  175 (368)
                      .|+|+|+|+|.+|..+|..|.+  .+.+|++++|+..
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~--~g~~V~v~dr~~~   36 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTD--SGIKVTVACRTLE   36 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHT--TTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCEEEEEECChH
Confidence            5899999999999999999985  4789999998753

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=92.72  E-value=0.033  Score=43.22  Aligned_cols=36  Identities=14%  Similarity=0.192  Sum_probs=31.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL  176 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~  176 (368)
                      -++|.|||+|.+|..+|..++.  .|.+|+++++.+..
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~--~G~~V~l~D~~~~~   39 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSAS--KGTPILMKDINEHG   39 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHH--TTCCEEEECSSHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHh--CCCeEEEEECCHHH
Confidence            5789999999999999988884  58999999988653

>d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=92.72  E-value=0.0035  Score=45.76  Aligned_cols=51  Identities=10%  Similarity=0.057  Sum_probs=35.2

Q ss_pred             ccccCCCeEEEeecCCcceeE--------ecCcc------ccCccceeeeccccchhHHHHHcCCCCC
Q 017664          313 TYKPGYPIALVSLGRREGVAH--------FPFLT------ISGRIPGWIKSRDLFVGKTRKQLGLKPT  366 (368)
Q Consensus       313 ~~~~~~~~~~~~~g~~~~~~~--------~~~~~------~~~~~~~~~k~~~~~~~~~~~~lG~~~~  366 (368)
                      -|+ .|+++.||+++++|..+        .++..      ..+...+++|+  ++++++++|||+|+.
T Consensus         8 VfT-~PeiA~VGlte~eA~~~g~~~~v~~~~~~~~~~a~~~~~~~~~~~kl--v~~~~~g~iLGa~iv   72 (128)
T d1feca3           8 VFS-IPPMGVCGYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRI--VTNHADGEVLGVHML   72 (128)
T ss_dssp             ECC-SSCEEEEECCHHHHHHHCSEEEEEEEEECCHHHHHHSCTTCCEEEEE--EEETTTTEEEEEEEE
T ss_pred             ecC-CCcceEEECCHHHHhhhhcCcceeecccchHHHHHhccccccceEEE--eecCCCCceeEEEEE
Confidence            343 68999999998776432        22211      12334567888  999999999999863

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=92.65  E-value=0.057  Score=41.11  Aligned_cols=34  Identities=12%  Similarity=0.170  Sum_probs=30.0

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      +.++|+|+|+|-++-++++.|. .|.+|+|+.|+.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            4578999999999999999997 488999999875

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=92.64  E-value=0.08  Score=39.39  Aligned_cols=34  Identities=15%  Similarity=0.142  Sum_probs=29.9

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      +-.+||+|.|.-|...+..|. +|.+|+++|.++.
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~   37 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPE   37 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEeccch
Confidence            446999999999999999997 5999999998763

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.58  E-value=0.064  Score=34.79  Aligned_cols=33  Identities=24%  Similarity=0.205  Sum_probs=29.7

Q ss_pred             CcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCc
Q 017664           17 KKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEY   49 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~   49 (368)
                      +.|.|+|||.=|...+...++ |+++.++|+++.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            579999999999999998876 999999998864

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=92.56  E-value=0.07  Score=37.68  Aligned_cols=36  Identities=22%  Similarity=0.493  Sum_probs=27.7

Q ss_pred             cCCeEEEEcCch-----------hHHHHHHHHhhhCCCCeEEEEecCcc
Q 017664          138 SANSVLIVGGGP-----------TGVELAGEIAVDFPDKKVILVHRGPK  175 (368)
Q Consensus       138 ~~~~v~VvG~g~-----------~~~e~a~~l~~~~~~~~v~~i~~~~~  175 (368)
                      ..++++|+|+|+           ++.+++..|++  .+.++.+++.++.
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~--~g~~~IliN~NPe   49 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALRE--DGYETIMVNCNPE   49 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHH--TTCEEEEECCCTT
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHh--cCCeEEEEecChh
Confidence            357899999987           45677777775  5888999987764

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=92.53  E-value=0.14  Score=38.40  Aligned_cols=73  Identities=18%  Similarity=0.231  Sum_probs=48.4

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEc
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIET  217 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~  217 (368)
                      ..++++|||+|.+|..++..|..+ .-.++++..|...           ...+..++.|.+...-....           
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~-g~~~i~v~nRt~~-----------ka~~l~~~~~~~~~~~~~~~-----------   79 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDR-GVRAVLVANRTYE-----------RAVELARDLGGEAVRFDELV-----------   79 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHH-CCSEEEEECSSHH-----------HHHHHHHHHTCEECCGGGHH-----------
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhc-CCcEEEEEcCcHH-----------HHHHHHHhhhcccccchhHH-----------
Confidence            578999999999999999999864 3347888887632           23344444455543222111           


Q ss_pred             CCCcEEecCEEEEccCCC
Q 017664          218 SSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       218 ~~g~~i~~d~vi~a~G~~  235 (368)
                        ..--++|.||.||+..
T Consensus        80 --~~l~~~Divi~atss~   95 (159)
T d1gpja2          80 --DHLARSDVVVSATAAP   95 (159)
T ss_dssp             --HHHHTCSEEEECCSSS
T ss_pred             --HHhccCCEEEEecCCC
Confidence              0123599999999854

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=92.40  E-value=0.055  Score=43.24  Aligned_cols=34  Identities=38%  Similarity=0.505  Sum_probs=29.6

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL  176 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~  176 (368)
                      .++|||+|+.|+.+|..+++  .+.+|.++++.+.+
T Consensus         8 DviIIG~GPaGlsaA~~aa~--~G~~V~viE~~~~~   41 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAAD--EGLKVAIVERYKTL   41 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSCS
T ss_pred             CEEEECcCHHHHHHHHHHHH--CCCeEEEEeccCCC
Confidence            58999999999999999985  58899999987643

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=92.29  E-value=0.079  Score=36.03  Aligned_cols=38  Identities=16%  Similarity=0.041  Sum_probs=32.8

Q ss_pred             cCCCCCCcEEEECCChHHHHH-HHHhh-cCCcEEEEcCCC
Q 017664           11 AGLVEKKKVVVIGGGVGGSLL-AYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        11 ~~~~~~~~vvIIGaG~aGl~a-A~~L~-~g~~v~lie~~~   48 (368)
                      |.|.+.+++-+||-|=+||++ |..|. +|++|+--|...
T Consensus         3 ~~~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~   42 (96)
T d1p3da1           3 PEMRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD   42 (96)
T ss_dssp             CCCTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred             ccchhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            667778899999999999999 77776 699999999874

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=92.21  E-value=0.064  Score=44.00  Aligned_cols=32  Identities=28%  Similarity=0.538  Sum_probs=28.8

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      .|+|||+|.+|+-+|.+|+++  +.+|+++++..
T Consensus         6 DvvIIGaGi~Gls~A~~La~~--G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKE--NKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCC
Confidence            599999999999999999974  78999999864

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=92.19  E-value=0.062  Score=39.59  Aligned_cols=32  Identities=38%  Similarity=0.497  Sum_probs=27.2

Q ss_pred             CcEEEECCChHHHHHHHHhh-cC--CcEEEEcCCC
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SF--ADVVLIDEKE   48 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g--~~v~lie~~~   48 (368)
                      .+|.|||+|..|.++|+.|. ++  .++.|+|.++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            57999999999999999886 44  4899999765

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.16  E-value=0.052  Score=41.99  Aligned_cols=33  Identities=24%  Similarity=0.301  Sum_probs=28.5

Q ss_pred             CcEEEE-CCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           17 KKVVVI-GGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        17 ~~vvII-GaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      ++|.|| |+|.-|.+.|..|. .|++|++..|++.
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e   35 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREE   35 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            368999 67999999999997 5999999999853

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=92.15  E-value=0.06  Score=41.41  Aligned_cols=35  Identities=26%  Similarity=0.230  Sum_probs=29.3

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCC-cEEEEcCCCc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFA-DVVLIDEKEY   49 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~-~v~lie~~~~   49 (368)
                      ...+|+|+|+|+.|+.++..++ .|. +|+++|+++.
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~   64 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN   64 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             CCCEEEEECCCccchhheecccccccccccccccccc
Confidence            3568999999999999998887 587 7999998763

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.13  E-value=0.13  Score=38.49  Aligned_cols=34  Identities=26%  Similarity=0.339  Sum_probs=28.6

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cC--CcEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SF--ADVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g--~~v~lie~~~   48 (368)
                      +..+|.|||+|..|.++|+.|. ++  .++.|+|.++
T Consensus        18 ~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          18 SRCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            3468999999999999999887 33  4899999875

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.99  E-value=0.063  Score=42.44  Aligned_cols=33  Identities=36%  Similarity=0.531  Sum_probs=28.7

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      ..++|||+|+.|+++|..+++  .+.+|.++++..
T Consensus         4 ~DviVIG~GpaGl~aA~~aar--~G~kV~vIEk~~   36 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQ--LGQKVTIVEKGN   36 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHH--CCCEEEEEecCC
Confidence            468999999999999998885  588999998764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=91.94  E-value=0.089  Score=40.17  Aligned_cols=34  Identities=24%  Similarity=0.199  Sum_probs=29.0

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFA-DVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~-~v~lie~~~   48 (368)
                      ....|+|+|+|+.|+.++..++ .|. +|+++|+++
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            4568999999999999999888 476 799999875

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=91.89  E-value=0.079  Score=44.38  Aligned_cols=35  Identities=20%  Similarity=0.303  Sum_probs=30.4

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL  176 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~  176 (368)
                      -.|+|||+|++|+-+|..|.+  .+.+++++++++.+
T Consensus         8 ~dV~IIGAG~sGl~~a~~L~~--~G~~v~i~Ek~~~i   42 (298)
T d1w4xa1           8 VDVLVVGAGFSGLYALYRLRE--LGRSVHVIETAGDV   42 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSS
T ss_pred             CCEEEECccHHHHHHHHHHHh--CCCCEEEEEcCCCc
Confidence            469999999999999999986  47899999987654

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.84  E-value=0.083  Score=41.40  Aligned_cols=35  Identities=17%  Similarity=0.237  Sum_probs=29.6

Q ss_pred             CCCCcEEEECC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           14 VEKKKVVVIGG-GVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        14 ~~~~~vvIIGa-G~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      |.+++|+|+|| |..|.+.+.+|. +|++|+++.|++
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~   37 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcCh
Confidence            34678999995 999999998775 699999998864

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=91.84  E-value=0.094  Score=39.72  Aligned_cols=34  Identities=18%  Similarity=0.164  Sum_probs=29.4

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFA-DVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~-~v~lie~~~   48 (368)
                      +.++|+|+|+|-++-++++.|. .|. +++|+.|+.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            4578999999999999999998 475 799998875

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=91.81  E-value=0.2  Score=42.76  Aligned_cols=38  Identities=26%  Similarity=0.244  Sum_probs=34.3

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCce
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYF   50 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~   50 (368)
                      |..++|+||||+|+||+++|.+|. +|++|+|+|++...
T Consensus         1 md~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~   39 (379)
T d2f5va1           1 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID   39 (379)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             CCCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence            567899999999999999999998 59999999998654

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.73  E-value=0.12  Score=36.12  Aligned_cols=35  Identities=34%  Similarity=0.396  Sum_probs=29.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK  175 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~  175 (368)
                      ..+|.|+|||+.|..++....  ..|.++.++++.+.
T Consensus        11 ~~kigIlGgGQL~rMla~aA~--~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQ--RLGVEVIAVDRYAD   45 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHH--TTTCEEEEEESSTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHH--HCCCEEEEEcCCCC
Confidence            467999999999999998876  47999999997754

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=91.38  E-value=0.11  Score=39.18  Aligned_cols=36  Identities=31%  Similarity=0.129  Sum_probs=29.8

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      ....+|+|+|+|+.|+.++..++ .|.+++++++++.
T Consensus        29 ~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~   65 (168)
T d1uufa2          29 GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA   65 (168)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCCEEEEeccchHHHHHHHHhhcccccchhhccchh
Confidence            34568999999999999998877 5999999987653

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=91.11  E-value=0.14  Score=38.92  Aligned_cols=36  Identities=19%  Similarity=0.170  Sum_probs=29.2

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFA-DVVLIDEKE   48 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~-~v~lie~~~   48 (368)
                      ......|+|+|+|+-|+.++..++ .|. +|++.|.++
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~   63 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDING   63 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccch
Confidence            344568999999999999999888 477 577788775

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=91.07  E-value=0.11  Score=39.59  Aligned_cols=34  Identities=18%  Similarity=0.281  Sum_probs=30.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      .|++.|+|+|..|.-+|..|.+  .|.+|++++|.+
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~--~G~~V~~~~r~~   34 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLAL--KGQSVLAWDIDA   34 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHH--CCCEEEEEECCH
Confidence            3789999999999999999996  478999998765

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=91.06  E-value=0.059  Score=38.79  Aligned_cols=35  Identities=23%  Similarity=0.158  Sum_probs=26.5

Q ss_pred             CCCcEEEECCChHHHHHHHHhh--cCCcEE-EEcCCCc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ--SFADVV-LIDEKEY   49 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~--~g~~v~-lie~~~~   49 (368)
                      ++++++|+|||-+|.+.+.++.  ++++++ .||.++.
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~   39 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPE   39 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTT
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchH
Confidence            4679999999999999998876  366654 5665543

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.01  E-value=0.38  Score=34.40  Aligned_cols=32  Identities=22%  Similarity=0.420  Sum_probs=28.2

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      +|+|+|+|..|..+|..|.+  .+.+|.+++.++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~--~g~~v~vid~d~   33 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSE--KGHDIVLIDIDK   33 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHH--CCCCcceecCCh
Confidence            68999999999999999985  478999998765

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=90.98  E-value=0.11  Score=38.06  Aligned_cols=33  Identities=33%  Similarity=0.492  Sum_probs=27.7

Q ss_pred             CcEEEECCChHHHHHHHHhh-cC--CcEEEEcCCCc
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SF--ADVVLIDEKEY   49 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g--~~v~lie~~~~   49 (368)
                      .+|.|||+|..|.++|..|. ++  .++.|+|.++.
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~   36 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccc
Confidence            36999999999999999886 33  58999998764

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=90.97  E-value=0.11  Score=43.36  Aligned_cols=33  Identities=27%  Similarity=0.608  Sum_probs=28.0

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      +|+|||+|.+|+-+|..|+++ ...+|+++++++
T Consensus         3 dViIIGaGi~G~s~A~~La~~-G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTR-GWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHc-CCCcEEEEeCCC
Confidence            699999999999999999863 225799999874

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=90.74  E-value=0.11  Score=42.63  Aligned_cols=32  Identities=28%  Similarity=0.427  Sum_probs=28.6

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      .|+|||+|.+|+-+|..|++  .+.+|+++++.+
T Consensus         5 DvvIIGaGi~Gls~A~~La~--~G~~V~viE~~~   36 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAK--QGVKTLLVDAFD   36 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCC
Confidence            48999999999999999996  488999999864

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.65  E-value=0.098  Score=38.44  Aligned_cols=33  Identities=27%  Similarity=0.403  Sum_probs=27.4

Q ss_pred             CcEEEECCChHHHHHHHHhh-cC--CcEEEEcCCCc
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SF--ADVVLIDEKEY   49 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g--~~v~lie~~~~   49 (368)
                      ++|.|||+|..|.++|+.|. ++  .++.|+|.++.
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~   36 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAED   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccc
Confidence            47999999999999999886 34  47999997753

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=90.64  E-value=0.13  Score=40.60  Aligned_cols=32  Identities=28%  Similarity=0.391  Sum_probs=28.2

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      .++|||+|+.|+.+|..+++  .+.+|.++++..
T Consensus         5 DviIIGgGpAGl~aA~~aar--~G~~V~viE~~~   36 (229)
T d3lada1           5 DVIVIGAGPGGYVAAIKSAQ--LGLKTALIEKYK   36 (229)
T ss_dssp             SEEEECCSHHHHHHHHHHHH--HTCCEEEEECCB
T ss_pred             CEEEECcCHHHHHHHHHHHH--CCCeEEEEeccc
Confidence            58999999999999999986  488999998754

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.58  E-value=0.12  Score=40.12  Aligned_cols=37  Identities=27%  Similarity=0.166  Sum_probs=29.1

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 017664           12 GLVEKKKVVVIGGGVGGSLLAYHIQ-SFA-DVVLIDEKE   48 (368)
Q Consensus        12 ~~~~~~~vvIIGaG~aGl~aA~~L~-~g~-~v~lie~~~   48 (368)
                      ......+|+|+|+|+.|+.++..++ .|. +|+++|.++
T Consensus        22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          22 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            3445668999999999999998776 454 788888765

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=90.45  E-value=0.16  Score=38.69  Aligned_cols=37  Identities=19%  Similarity=0.133  Sum_probs=30.2

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cC-CcEEEEcCCCc
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SF-ADVVLIDEKEY   49 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g-~~v~lie~~~~   49 (368)
                      ......|+|+|+|+.|+.++..++ .| .+|+++|.++.
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD   65 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence            334556999999999999999887 46 58999998764

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.32  E-value=0.14  Score=38.70  Aligned_cols=32  Identities=19%  Similarity=0.246  Sum_probs=27.1

Q ss_pred             CcEEEECCChHHHHHHHHhhc-CC--cEEEEcCCC
Q 017664           17 KKVVVIGGGVGGSLLAYHIQS-FA--DVVLIDEKE   48 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~~-g~--~v~lie~~~   48 (368)
                      ++|.|||.|.-|.+.|+.|++ |+  +|..+|+++
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            469999999999999999974 54  788889875

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=90.27  E-value=0.22  Score=35.82  Aligned_cols=75  Identities=13%  Similarity=0.226  Sum_probs=48.7

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCC
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSS  219 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~  219 (368)
                      |+++|+|.|..|..+|..|.+  .+.+|.+++.++.            ..+.+++.+...+.+.. .    +...+... 
T Consensus         1 k~~iIiG~G~~G~~la~~L~~--~g~~vvvid~d~~------------~~~~~~~~~~~~~~gd~-~----~~~~l~~a-   60 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHR--MGHEVLAVDINEE------------KVNAYASYATHAVIANA-T----EENELLSL-   60 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH--TTCCCEEEESCHH------------HHHHTTTTCSEEEECCT-T----CTTHHHHH-
T ss_pred             CEEEEECCCHHHHHHHHHHHH--CCCeEEEecCcHH------------HHHHHHHhCCcceeeec-c----cchhhhcc-
Confidence            679999999999999999986  4889999987653            22334566766654421 0    11111100 


Q ss_pred             CcEEecCEEEEccCCC
Q 017664          220 GETIDTDCHFMCTGKA  235 (368)
Q Consensus       220 g~~i~~d~vi~a~G~~  235 (368)
                      | --++|.+|++++..
T Consensus        61 ~-i~~a~~vi~~~~~~   75 (134)
T d2hmva1          61 G-IRNFEYVIVAIGAN   75 (134)
T ss_dssp             T-GGGCSEEEECCCSC
T ss_pred             C-CccccEEEEEcCch
Confidence            1 23589999998755

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.07  E-value=0.15  Score=44.31  Aligned_cols=38  Identities=32%  Similarity=0.552  Sum_probs=31.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHhh----hCCCCeEEEEecCccc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAV----DFPDKKVILVHRGPKL  176 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~----~~~~~~v~~i~~~~~~  176 (368)
                      .-.|+|||+|++|+-+|..|++    ...+.+|.+++++..+
T Consensus        32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~p   73 (380)
T d2gmha1          32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI   73 (380)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSST
T ss_pred             cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCC
Confidence            3579999999999999998875    1358899999998654

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.03  E-value=0.14  Score=38.57  Aligned_cols=34  Identities=21%  Similarity=0.135  Sum_probs=28.9

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      ....|+|+|+|+.|+.++..++ .|.+|++++.++
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            3567999999999999988777 589999999765

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.84  E-value=0.14  Score=37.69  Aligned_cols=33  Identities=36%  Similarity=0.447  Sum_probs=27.3

Q ss_pred             CcEEEECC-ChHHHHHHHHhh-cC--CcEEEEcCCCc
Q 017664           17 KKVVVIGG-GVGGSLLAYHIQ-SF--ADVVLIDEKEY   49 (368)
Q Consensus        17 ~~vvIIGa-G~aGl~aA~~L~-~g--~~v~lie~~~~   49 (368)
                      .+|.|||| |..|.++|..|. ++  .++.|+|.++.
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHS   37 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhh
Confidence            36999996 999999999887 44  48999998753

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.84  E-value=0.13  Score=41.04  Aligned_cols=33  Identities=36%  Similarity=0.541  Sum_probs=28.7

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK  175 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~  175 (368)
                      .++|||+|+.|+.+|..+++  .+.+|.+++..+.
T Consensus         5 DviVIG~GpaGl~aA~~aa~--~G~kV~viE~~~~   37 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAK--FDKKVMVLDFVTP   37 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGG--GCCCEEEECCCCC
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCC
Confidence            58999999999999999985  5899999996543

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=89.82  E-value=0.2  Score=36.69  Aligned_cols=35  Identities=17%  Similarity=0.292  Sum_probs=28.9

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK  175 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~  175 (368)
                      ||.|||+|..|..+|..+.......++.+++..+.
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~   36 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccc
Confidence            68999999999999998886544568999987654

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=89.74  E-value=0.18  Score=37.36  Aligned_cols=34  Identities=38%  Similarity=0.540  Sum_probs=27.3

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-C-CcEEEEcCCCc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-F-ADVVLIDEKEY   49 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g-~~v~lie~~~~   49 (368)
                      +.+|.|||+|..|.++|..|.. + .++.|+|.++.
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~   38 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKN   38 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCC
Confidence            3589999999999999987753 2 38999997653

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.73  E-value=0.14  Score=38.42  Aligned_cols=33  Identities=21%  Similarity=0.189  Sum_probs=29.3

Q ss_pred             CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      ++|-+||-|.-|...|.+|. +|++|.++|+++.
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~   35 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQS   35 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchh
Confidence            46999999999999999997 5999999998753

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=89.54  E-value=0.18  Score=41.79  Aligned_cols=35  Identities=20%  Similarity=0.257  Sum_probs=30.1

Q ss_pred             CCCcEEEECC-ChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           15 EKKKVVVIGG-GVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        15 ~~~~vvIIGa-G~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      ++.+|+|+|| |..|...+.+|. +|++|+++.|+..
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            4667999996 999999999886 6999999998653

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=89.30  E-value=0.2  Score=38.13  Aligned_cols=34  Identities=18%  Similarity=0.160  Sum_probs=30.2

Q ss_pred             CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      +.+|-|||-|.-|...|.+|. +|++|.++|+++.
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~   36 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   36 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            457999999999999999997 5999999998863

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=89.30  E-value=0.36  Score=35.99  Aligned_cols=37  Identities=24%  Similarity=0.227  Sum_probs=30.9

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      ...+|.|||+|..|..+|..+..+....++.+++..+
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            3579999999999999999998765566899988654

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=89.22  E-value=0.21  Score=37.74  Aligned_cols=36  Identities=17%  Similarity=0.134  Sum_probs=28.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhc--CCcEEEEcCCCc
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQS--FADVVLIDEKEY   49 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~--g~~v~lie~~~~   49 (368)
                      .....|+|+|+|+.|+.++..++.  +.+|+.+|+++.
T Consensus        27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~   64 (175)
T d1cdoa2          27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD   64 (175)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCCCEEEEEecCCccchHHHHHHHHhhchheeecchHH
Confidence            344569999999999999988873  567888998763

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.15  E-value=0.3  Score=35.77  Aligned_cols=34  Identities=29%  Similarity=0.338  Sum_probs=27.5

Q ss_pred             eEEEEcC-chhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          141 SVLIVGG-GPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       141 ~v~VvG~-g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      ||.|+|+ |..|..+|..+..+..-.++.+++..+
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            6899995 999999999888644446899988764

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.14  E-value=0.15  Score=37.24  Aligned_cols=32  Identities=31%  Similarity=0.439  Sum_probs=26.8

Q ss_pred             CcEEEECCChHHHHHHHHhh-c--CCcEEEEcCCC
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-S--FADVVLIDEKE   48 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~--g~~v~lie~~~   48 (368)
                      .+|.|||+|..|.++|..|. +  -.++.|+|.++
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            47999999999999998876 3  35899999775

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=89.01  E-value=0.2  Score=41.17  Aligned_cols=35  Identities=17%  Similarity=0.211  Sum_probs=30.5

Q ss_pred             CCCcEEEECC-ChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           15 EKKKVVVIGG-GVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        15 ~~~~vvIIGa-G~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      .+++|+|+|| |.-|-..+.+|. +|++|++++|++.
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   38 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            4678999997 999999999885 6999999998754

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.95  E-value=0.18  Score=37.03  Aligned_cols=31  Identities=29%  Similarity=0.386  Sum_probs=25.9

Q ss_pred             cEEEECC-ChHHHHHHHHhhc-C--CcEEEEcCCC
Q 017664           18 KVVVIGG-GVGGSLLAYHIQS-F--ADVVLIDEKE   48 (368)
Q Consensus        18 ~vvIIGa-G~aGl~aA~~L~~-g--~~v~lie~~~   48 (368)
                      +|.|||| |..|.++|..|.. +  -++.|+|.++
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            6999996 9999999998873 4  4799999764

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.89  E-value=1.4  Score=34.40  Aligned_cols=36  Identities=22%  Similarity=0.254  Sum_probs=28.3

Q ss_pred             CCCcEEEECCChHHHHHHHHhh---------------------cC-CcEEEEcCCCce
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ---------------------SF-ADVVLIDEKEYF   50 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~---------------------~g-~~v~lie~~~~~   50 (368)
                      ...+|+|||+|-.+|=+|+.|.                     .+ .+|+++-|....
T Consensus        38 ~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~~   95 (216)
T d1lqta1          38 SGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPL   95 (216)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGG
T ss_pred             cCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECChH
Confidence            4679999999999999997653                     23 369999887653

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=88.77  E-value=0.22  Score=37.11  Aligned_cols=37  Identities=27%  Similarity=0.207  Sum_probs=33.0

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      |-..+.++|+|=|..|-.+|.+|+ .|.+|+|.|.+|.
T Consensus        20 ~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi   57 (163)
T d1v8ba1          20 LISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPI   57 (163)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred             eecCCEEEEecccccchhHHHHHHhCCCEEEEEecCch
Confidence            445789999999999999999999 5999999998873

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=88.70  E-value=0.26  Score=36.70  Aligned_cols=33  Identities=18%  Similarity=0.231  Sum_probs=29.6

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK  175 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~  175 (368)
                      ||+|+|+|.+|.-+|..|.+  .+.+|+++.|.++
T Consensus         2 kI~IiGaG~iG~~~a~~L~~--~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCK--QGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHH--CCCceEEEEcCHH
Confidence            68999999999999999986  5889999998765

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.66  E-value=0.22  Score=42.52  Aligned_cols=36  Identities=28%  Similarity=0.289  Sum_probs=29.9

Q ss_pred             CCCCCcEEEEC-CChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           13 LVEKKKVVVIG-GGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        13 ~~~~~~vvIIG-aG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      |.+.++|+|.| +|+-|-..+.+|. +|++|+++|+..
T Consensus        12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          12 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            44566799998 5999999999886 699999998653

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.62  E-value=0.18  Score=37.67  Aligned_cols=32  Identities=25%  Similarity=0.278  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           18 KVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        18 ~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      +|-|||-|.-|...|..|. +|++|.++|+++.
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~   34 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPE   34 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            6899999999999999987 5999999998753

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.60  E-value=0.22  Score=37.19  Aligned_cols=36  Identities=25%  Similarity=0.217  Sum_probs=32.0

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      +...+.++|||-|..|-.+|..|+ .|.+|++.|..+
T Consensus        21 ~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          21 MIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             eecCCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            345678999999999999999999 599999999875

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=88.49  E-value=1.9  Score=28.71  Aligned_cols=78  Identities=8%  Similarity=0.069  Sum_probs=54.1

Q ss_pred             hcCCeEEEEcCchhHHHH-HHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeE
Q 017664          137 KSANSVLIVGGGPTGVEL-AGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLI  215 (368)
Q Consensus       137 ~~~~~v~VvG~g~~~~e~-a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v  215 (368)
                      .+.+++.++|-|-+|+-. |..|.+  .|.+|+-.+....           ...+.+++.|++++.+.....+.      
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~--~G~~VsGSD~~~~-----------~~~~~L~~~Gi~v~~g~~~~~i~------   66 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLN--EGYQISGSDIADG-----------VVTQRLAQAGAKIYIGHAEEHIE------   66 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHH--HTCEEEEEESCCS-----------HHHHHHHHTTCEEEESCCGGGGT------
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHh--CCCEEEEEeCCCC-----------hhhhHHHHCCCeEEECCccccCC------
Confidence            457899999988888764 777775  4889988775532           23356667899998877543221      


Q ss_pred             EcCCCcEEecCEEEEccCCCCCchhh
Q 017664          216 ETSSGETIDTDCHFMCTGKAMASSWL  241 (368)
Q Consensus       216 ~~~~g~~i~~d~vi~a~G~~p~~~~~  241 (368)
                              .+|.+|++.+...+.+.+
T Consensus        67 --------~~d~vV~S~AI~~~npel   84 (96)
T d1p3da1          67 --------GASVVVVSSAIKDDNPEL   84 (96)
T ss_dssp             --------TCSEEEECTTSCTTCHHH
T ss_pred             --------CCCEEEECCCcCCCCHHH
Confidence                    258999998877654433

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=88.47  E-value=0.2  Score=36.98  Aligned_cols=33  Identities=27%  Similarity=0.148  Sum_probs=28.6

Q ss_pred             CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY   49 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~   49 (368)
                      ++|-|||.|-.|.+.|..|+ +|+++++.++.+.
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~   34 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRS   34 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCC
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchh
Confidence            36999999999999999997 5899999987653

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=88.38  E-value=0.26  Score=36.80  Aligned_cols=35  Identities=23%  Similarity=0.337  Sum_probs=29.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFA-DVVLIDEKE   48 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~-~v~lie~~~   48 (368)
                      .+..+++|||+|-.|-.++.+|. +|. +++|+-|..
T Consensus        22 l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~   58 (159)
T d1gpja2          22 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY   58 (159)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             cccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcH
Confidence            45678999999999999999997 476 588988863

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=88.28  E-value=0.25  Score=37.54  Aligned_cols=34  Identities=15%  Similarity=0.427  Sum_probs=29.1

Q ss_pred             CCCcEEEECCChHHHHHHHHhhcCCcEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~g~~v~lie~~~   48 (368)
                      +.++++|+|+|-++-++++.|.+..+|.|+.|+.
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~~~~i~I~nR~~   50 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAKDNNIIIANRTV   50 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSSEEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHccccceeeehhhh
Confidence            5678999999999999999998644999998874

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=88.17  E-value=0.22  Score=41.41  Aligned_cols=33  Identities=33%  Similarity=0.516  Sum_probs=29.2

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      -.|+|||+|.+|+-+|..+++  .+.+|.++++.+
T Consensus        17 ~DVlVIG~G~aGl~aA~~la~--~G~~V~lvEK~~   49 (308)
T d1y0pa2          17 VDVVVVGSGGAGFSAAISATD--SGAKVILIEKEP   49 (308)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCC
Confidence            479999999999999999996  488999999764

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=88.03  E-value=0.17  Score=38.38  Aligned_cols=34  Identities=15%  Similarity=0.283  Sum_probs=29.4

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      +.++++|+|+|-++-++++.|. .+.+|+|+.|+.
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            4678999999999999999887 477999999874

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=87.90  E-value=0.2  Score=35.80  Aligned_cols=32  Identities=19%  Similarity=0.215  Sum_probs=27.2

Q ss_pred             CcEEEECCChHHHHHHHHhhcCCcEEEEcCCCc
Q 017664           17 KKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEY   49 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~~g~~v~lie~~~~   49 (368)
                      +.+||+|.|..|...+..|+ +.+|.++|.++.
T Consensus         1 kHivI~G~g~~g~~l~~~L~-~~~i~vi~~d~~   32 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELR-GSEVFVLAEDEN   32 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSC-GGGEEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHc-CCCCEEEEcchH
Confidence            35899999999999999995 667889988764

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.74  E-value=0.31  Score=38.79  Aligned_cols=34  Identities=29%  Similarity=0.491  Sum_probs=26.9

Q ss_pred             eEEEEcCchhHHHHHHHHhhhC-CCCeEEEEecCc
Q 017664          141 SVLIVGGGPTGVELAGEIAVDF-PDKKVILVHRGP  174 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~-~~~~v~~i~~~~  174 (368)
                      +|+|||+|+.|+.+|...++.. .+.+|.++++..
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            7999999999999998776532 346899999753

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=87.48  E-value=0.3  Score=41.69  Aligned_cols=32  Identities=13%  Similarity=0.267  Sum_probs=28.9

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      .|+|||+|..|.-+|..|++  .+.+|.+++++.
T Consensus         4 ~VIVVGsG~aG~v~A~rLae--aG~~VlvLEaG~   35 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGE--AGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCCEEEEESSC
T ss_pred             eEEEeCcCHHHHHHHHHHHH--CcCeEEEEecCC
Confidence            58999999999999999996  489999999974

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=87.30  E-value=1.2  Score=32.42  Aligned_cols=79  Identities=10%  Similarity=0.159  Sum_probs=51.9

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCC
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSS  219 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~  219 (368)
                      .+++|+|.|..|..++..|.+  .+.++.+++..+        +......+.+...|+.++.+..-..     ..+.-. 
T Consensus         4 nHiII~G~g~~g~~l~~~L~~--~~~~v~vId~d~--------~~~~~~~~~~~~~~~~vi~Gd~~d~-----~~L~~a-   67 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQ--RGQNVTVISNLP--------EDDIKQLEQRLGDNADVIPGDSNDS-----SVLKKA-   67 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHH--TTCCEEEEECCC--------HHHHHHHHHHHCTTCEEEESCTTSH-----HHHHHH-
T ss_pred             CEEEEECCCHHHHHHHHHHHH--cCCCEEEEeccc--------hhHHHHHHHhhcCCcEEEEccCcch-----HHHHHh-
Confidence            579999999999999999986  478898887654        2234444556667898887643110     001000 


Q ss_pred             CcEEecCEEEEccCCC
Q 017664          220 GETIDTDCHFMCTGKA  235 (368)
Q Consensus       220 g~~i~~d~vi~a~G~~  235 (368)
                      | --++|.+|.+++..
T Consensus        68 ~-i~~a~~vi~~~~~d   82 (153)
T d1id1a_          68 G-IDRCRAILALSDND   82 (153)
T ss_dssp             T-TTTCSEEEECSSCH
T ss_pred             c-cccCCEEEEccccH
Confidence            0 12489999988754

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.28  E-value=0.45  Score=35.42  Aligned_cols=36  Identities=22%  Similarity=0.255  Sum_probs=29.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      ..+|.|||+|..|..+|..+.......++.+++..+
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            357999999999999999988655556899988654

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=87.09  E-value=0.32  Score=39.35  Aligned_cols=31  Identities=32%  Similarity=0.605  Sum_probs=27.8

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRG  173 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~  173 (368)
                      .++|||+|+.|+.+|..+++  .+.+|.++++.
T Consensus         3 DviVIG~G~aG~~aA~~aa~--~G~~V~liE~~   33 (259)
T d1onfa1           3 DLIVIGGGSGGMAAARRAAR--HNAKVALVEKS   33 (259)
T ss_dssp             SEEEECCSHHHHHHHHHHHH--TTCCEEEEESS
T ss_pred             eEEEECCCHHHHHHHHHHHH--CCCeEEEEecC
Confidence            48999999999999999986  58999999975

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=87.04  E-value=0.36  Score=36.52  Aligned_cols=36  Identities=14%  Similarity=0.089  Sum_probs=29.1

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFA-DVVLIDEKE   48 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~-~v~lie~~~   48 (368)
                      ......|+|+|+|+.|+.++..++ .|. +|+++|.++
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~   62 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK   62 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence            334567999999999999999887 465 788888875

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=86.98  E-value=0.32  Score=36.88  Aligned_cols=32  Identities=31%  Similarity=0.313  Sum_probs=28.9

Q ss_pred             CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      ++|-|||-|.-|...|.+|. +|++|.+.|+++
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~   34 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCH
Confidence            46999999999999999997 599999999875

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=86.83  E-value=0.44  Score=34.90  Aligned_cols=38  Identities=21%  Similarity=0.281  Sum_probs=31.8

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK  175 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~  175 (368)
                      +..+|.|||+|..|..+|..|..+....++.++++.+.
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~   41 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKD   41 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccc
Confidence            45789999999999999999987655678999987653

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=86.80  E-value=0.94  Score=34.11  Aligned_cols=34  Identities=24%  Similarity=0.412  Sum_probs=27.9

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      ++++++|+|+|-++--++..|.+  .+ +|+++.|..
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~--~~-~i~I~nR~~   50 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAK--DN-NIIIANRTV   50 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTS--SS-EEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHcc--cc-ceeeehhhh
Confidence            58999999999998888877763  33 899998875

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=86.77  E-value=0.45  Score=34.82  Aligned_cols=37  Identities=16%  Similarity=0.257  Sum_probs=30.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK  175 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~  175 (368)
                      .|+|.|||+|..|..+|..+..+....++.+++..+.
T Consensus         1 ~kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~   37 (146)
T d1hyha1           1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEA   37 (146)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccc
Confidence            3799999999999999998886655568888886543

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=86.74  E-value=0.35  Score=36.88  Aligned_cols=35  Identities=14%  Similarity=0.272  Sum_probs=28.9

Q ss_pred             CCCcEEEECCChHHHHHHHHhhc-CC-cEEEEcCCCc
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQS-FA-DVVLIDEKEY   49 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~~-g~-~v~lie~~~~   49 (368)
                      +.++|+|+|+|-+|-++++.|.+ |. +++|+.|.+.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~   53 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE   53 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence            45799999999999999988874 54 7899998753

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=86.65  E-value=0.31  Score=40.83  Aligned_cols=34  Identities=32%  Similarity=0.540  Sum_probs=29.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      .-.|+|||+|.+|+-+|..+++  .+.+|.++++.+
T Consensus        23 t~DVvVIG~G~aGl~aA~~la~--~G~~V~llEk~~   56 (322)
T d1d4ca2          23 TTDVVIIGSGGAGLAAAVSARD--AGAKVILLEKEP   56 (322)
T ss_dssp             ECSEEEECSSHHHHHHHHHHHT--TTCCEEEECSSS
T ss_pred             cceEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCC
Confidence            3469999999999999999985  588999999764

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=86.62  E-value=1.1  Score=33.64  Aligned_cols=74  Identities=14%  Similarity=0.178  Sum_probs=47.0

Q ss_pred             hcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCC-cEEEecceeeecccCCCeE
Q 017664          137 KSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKK-VEVILNQSVTLNTISDGLI  215 (368)
Q Consensus       137 ~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~~~~v  215 (368)
                      ..+++++|+|+|-++--++..|.+  .+.+|+++.|+..        -.+.+.+.+...+ +...        .      
T Consensus        16 ~~~k~vlIlGaGGaarai~~aL~~--~~~~i~I~nR~~~--------~a~~l~~~~~~~~~~~~~--------~------   71 (171)
T d1p77a1          16 RPNQHVLILGAGGATKGVLLPLLQ--AQQNIVLANRTFS--------KTKELAERFQPYGNIQAV--------S------   71 (171)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHH--TTCEEEEEESSHH--------HHHHHHHHHGGGSCEEEE--------E------
T ss_pred             CCCCEEEEECCcHHHHHHHHHHcc--cCceeeeccchHH--------HHHHHHHHHhhccccchh--------h------
Confidence            357899999999999888888775  4578999998752        3444445554332 1111        1      


Q ss_pred             EcCCCcEEecCEEEEccCCC
Q 017664          216 ETSSGETIDTDCHFMCTGKA  235 (368)
Q Consensus       216 ~~~~g~~i~~d~vi~a~G~~  235 (368)
                       ..+....++|.+|-||..-
T Consensus        72 -~~~~~~~~~diiIN~tp~g   90 (171)
T d1p77a1          72 -MDSIPLQTYDLVINATSAG   90 (171)
T ss_dssp             -GGGCCCSCCSEEEECCCC-
T ss_pred             -hccccccccceeeeccccc
Confidence             1111224589999997654

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=86.34  E-value=0.33  Score=41.52  Aligned_cols=32  Identities=22%  Similarity=0.318  Sum_probs=28.6

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      .++|||+|..|+-+|..|++  .+.+|.+++++.
T Consensus         9 dvIVVGsG~aG~v~A~rLae--aG~~VlvLEaG~   40 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQ--AGIPTQIVEMGR   40 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCC
Confidence            58999999999999999996  489999999863

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=86.12  E-value=0.34  Score=40.74  Aligned_cols=32  Identities=25%  Similarity=0.397  Sum_probs=28.0

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      .|+|||+|++|+-.|..+++  .+.+|.++++.+
T Consensus         7 DVvVIG~G~AGl~AAl~aa~--~G~~V~liEK~~   38 (336)
T d2bs2a2           7 DSLVIGGGLAGLRAAVATQQ--KGLSTIVLSLIP   38 (336)
T ss_dssp             SEEEECCSHHHHHHHHHHHT--TTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHH--CCCCEEEEecCC
Confidence            59999999999999999985  588999998754

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=85.98  E-value=0.42  Score=36.97  Aligned_cols=44  Identities=25%  Similarity=0.301  Sum_probs=34.7

Q ss_pred             eeccCCcCCCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCC
Q 017664            5 LWGSTAAGLVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKE   48 (368)
Q Consensus         5 ~~~~~~~~~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~   48 (368)
                      .|.......-..++|.|||-|..|-..|..|+. |.+|..+|+..
T Consensus        32 ~w~~~~g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~   76 (197)
T d1j4aa1          32 RWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR   76 (197)
T ss_dssp             CCTTCCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CcCCCcCccccCCeEEEecccccchhHHHhHhhhcccccccCccc
Confidence            354433333457899999999999999999985 99999998754

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=85.84  E-value=0.36  Score=40.33  Aligned_cols=33  Identities=33%  Similarity=0.563  Sum_probs=28.7

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      -.|+|||+|.+|+-.|..++++  +.+|.++++.+
T Consensus        20 ~DVvVIGaG~aGl~AA~~aa~~--G~~V~vlEK~~   52 (317)
T d1qo8a2          20 TQVLVVGAGSAGFNASLAAKKA--GANVILVDKAP   52 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHH--TCCEEEECSSS
T ss_pred             cCEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCC
Confidence            4599999999999999999864  78999998764

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=85.79  E-value=0.45  Score=35.87  Aligned_cols=37  Identities=16%  Similarity=0.169  Sum_probs=29.6

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhhc--CCcEEEEcCCCc
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQS--FADVVLIDEKEY   49 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~~--g~~v~lie~~~~   49 (368)
                      ......|+|+|+|..|++++..++.  +.+|++++.++.
T Consensus        26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~   64 (176)
T d2jhfa2          26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKD   64 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHH
Confidence            3445679999999999999998874  468999998763

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=85.76  E-value=1.2  Score=32.56  Aligned_cols=33  Identities=24%  Similarity=0.559  Sum_probs=26.8

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      ++.+||.|..|.-++..|.+. ...+|.+.+|++
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~-~~~~i~v~~r~~   34 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQ-GGYRIYIANRGA   34 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-CSCEEEEECSSH
T ss_pred             EEEEEcCcHHHHHHHHHHHHC-CCCcEEEEeCCh
Confidence            588999999999999988764 347888887764

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.66  E-value=0.56  Score=34.39  Aligned_cols=38  Identities=13%  Similarity=0.274  Sum_probs=31.6

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK  175 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~  175 (368)
                      .++||.|||+|..|..+|..+.......++.+++..+.
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~   42 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANES   42 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccc
Confidence            46789999999999999999987655668999987653

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=85.46  E-value=0.49  Score=35.66  Aligned_cols=35  Identities=20%  Similarity=0.204  Sum_probs=26.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHhh-cCCcE-EEEcCCC
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADV-VLIDEKE   48 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v-~lie~~~   48 (368)
                      ....+|+|+|+|+.|+.++..++ .|.++ ++.|+++
T Consensus        27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~   63 (174)
T d1f8fa2          27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE   63 (174)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHH
Confidence            34567999999999999998887 47655 5566654

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=85.43  E-value=1.4  Score=36.97  Aligned_cols=61  Identities=15%  Similarity=0.173  Sum_probs=44.8

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHc-CCcEEEecceee
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTS-KKVEVILNQSVT  206 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~-~gv~i~~~~~v~  206 (368)
                      ..+++.|||+|..+...+..+...++-.+|.++.|++        +-.+.+.+.+++ .|+++..-..+.
T Consensus       127 da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~--------~~~~~~~~~l~~~~g~~v~~~~s~~  188 (340)
T d1x7da_         127 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDP--------LATAKLIANLKEYSGLTIRRASSVA  188 (340)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSH--------HHHHHHHHHHTTCTTCEEEECSSHH
T ss_pred             CCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecCh--------HHHHHHHHhhhhccCCCceecCCHH
Confidence            4689999999999988777777666667888888765        345566666654 488887655444

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=85.13  E-value=0.48  Score=39.48  Aligned_cols=35  Identities=29%  Similarity=0.394  Sum_probs=30.4

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      -.|+|||+|..|+-.|..+.+..++.+|.++++.+
T Consensus         6 ~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~   40 (311)
T d1kf6a2           6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVY   40 (311)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSC
T ss_pred             cCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence            46899999999999999998766788999998754

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=85.10  E-value=0.43  Score=30.69  Aligned_cols=34  Identities=21%  Similarity=0.126  Sum_probs=28.6

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK  175 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~  175 (368)
                      |+|.|+|+|..|..++..-.  ..|.++.++++.+.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~--~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGE--PLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHG--GGTEEEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHH--HcCCEEEEEcCCCC
Confidence            57999999999999998776  36899999987654

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=84.73  E-value=0.33  Score=39.41  Aligned_cols=32  Identities=19%  Similarity=0.387  Sum_probs=28.4

Q ss_pred             CcEEEECC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           17 KKVVVIGG-GVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        17 ~~vvIIGa-G~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      ++|+|.|| |+.|-..+.+|. +|++|+.+++++
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            56999997 999999999997 699999998864

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=84.64  E-value=0.46  Score=35.69  Aligned_cols=34  Identities=26%  Similarity=0.326  Sum_probs=27.1

Q ss_pred             CCCcEEEECCChHHHHHHHHhh-cC-CcEEEEcCCC
Q 017664           15 EKKKVVVIGGGVGGSLLAYHIQ-SF-ADVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGaG~aGl~aA~~L~-~g-~~v~lie~~~   48 (368)
                      ....|+|+|+|+.|+.++..++ .| ..|+++|+++
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            3467999999999999998886 45 4677788765

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=84.63  E-value=2.1  Score=28.07  Aligned_cols=75  Identities=13%  Similarity=0.054  Sum_probs=50.7

Q ss_pred             CeEEEEcCchhHHH-HHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcC
Q 017664          140 NSVLIVGGGPTGVE-LAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETS  218 (368)
Q Consensus       140 ~~v~VvG~g~~~~e-~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~  218 (368)
                      .|+-++|-|-+|+- +|..|.+  .+..|+-.++...           ...+.|++.|++++.+.....           
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~--~G~~VsGSD~~~~-----------~~t~~L~~~Gi~i~~gh~~~~-----------   57 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFS--NGNDVYGSNIEET-----------ERTAYLRKLGIPIFVPHSADN-----------   57 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH--TTCEEEEECSSCC-----------HHHHHHHHTTCCEESSCCTTS-----------
T ss_pred             cEEEEEeECHHHHHHHHHHHHh--CCCeEEEEeCCCC-----------hhHHHHHHCCCeEEeeecccc-----------
Confidence            36778887777764 5666664  5889988775432           344568999999987654321           


Q ss_pred             CCcEEecCEEEEccCCCCCchhh
Q 017664          219 SGETIDTDCHFMCTGKAMASSWL  241 (368)
Q Consensus       219 ~g~~i~~d~vi~a~G~~p~~~~~  241 (368)
                         ...+|.||++...+.+.+.+
T Consensus        58 ---i~~~d~vV~SsAI~~~npel   77 (89)
T d1j6ua1          58 ---WYDPDLVIKTPAVRDDNPEI   77 (89)
T ss_dssp             ---CCCCSEEEECTTCCTTCHHH
T ss_pred             ---cCCCCEEEEecCcCCCCHHH
Confidence               12489999999887665443

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=84.57  E-value=0.52  Score=34.43  Aligned_cols=32  Identities=31%  Similarity=0.374  Sum_probs=25.9

Q ss_pred             CcEEEEC-CChHHHHHHHHhh-c---CCcEEEEcCCC
Q 017664           17 KKVVVIG-GGVGGSLLAYHIQ-S---FADVVLIDEKE   48 (368)
Q Consensus        17 ~~vvIIG-aG~aGl~aA~~L~-~---g~~v~lie~~~   48 (368)
                      .+|.||| +|..|.++|+.|. +   ..++.++|..+
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            4799999 5999999998874 2   46899999654

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=83.89  E-value=0.74  Score=33.42  Aligned_cols=36  Identities=22%  Similarity=0.320  Sum_probs=29.1

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK  175 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~  175 (368)
                      ++|.|||+|..|..+|..+..+....++.+++..+.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            579999999999999998887555568999987654

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=83.59  E-value=0.58  Score=34.40  Aligned_cols=32  Identities=16%  Similarity=0.218  Sum_probs=27.9

Q ss_pred             CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      ++|.|||+|--|.+.|..|. .++++++.++++
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            36899999999999999887 489999998864

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=83.56  E-value=0.79  Score=33.31  Aligned_cols=36  Identities=19%  Similarity=0.281  Sum_probs=30.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      +.|+.|||+|..|..+|..+..+....++.+++..+
T Consensus         1 p~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           1 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            468999999999999999888765666899888654

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=83.56  E-value=0.67  Score=36.39  Aligned_cols=37  Identities=32%  Similarity=0.411  Sum_probs=29.8

Q ss_pred             CCCCCcEEEECCChHHHHHHHHhhc--CCcEEEEcCCCc
Q 017664           13 LVEKKKVVVIGGGVGGSLLAYHIQS--FADVVLIDEKEY   49 (368)
Q Consensus        13 ~~~~~~vvIIGaG~aGl~aA~~L~~--g~~v~lie~~~~   49 (368)
                      ..+..++|+.|+|.||+..|..|..  -.++.++|+...
T Consensus        23 ~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GL   61 (222)
T d1vl6a1          23 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGI   61 (222)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEE
T ss_pred             ChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeE
Confidence            3456899999999999999998863  457888888643

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.34  E-value=1.5  Score=33.72  Aligned_cols=77  Identities=19%  Similarity=0.282  Sum_probs=50.0

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc--------ccccCchhHHHHHHHHHcCCcEEEecceeeecccCC
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL--------LEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISD  212 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~--------l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~  212 (368)
                      +|.|+|.|+.|.-+|..+++  .+.+|+.++.++..        .|..++.+.+.+.+..........+...        
T Consensus         2 kI~ViGlG~vGl~~a~~la~--~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~--------   71 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSA--RGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFK--------   71 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHH--TTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHH--------
T ss_pred             EEEEECCCHhHHHHHHHHHh--CCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHH--------
Confidence            58999999999999999986  47899999876432        2334445555555555554443322110        


Q ss_pred             CeEEcCCCc-EEecCEEEEccCCC
Q 017664          213 GLIETSSGE-TIDTDCHFMCTGKA  235 (368)
Q Consensus       213 ~~v~~~~g~-~i~~d~vi~a~G~~  235 (368)
                              + .-.+|.+++|.+..
T Consensus        72 --------~~i~~~d~i~i~VpTP   87 (202)
T d1mv8a2          72 --------KAVLDSDVSFICVGTP   87 (202)
T ss_dssp             --------HHHHTCSEEEECCCCC
T ss_pred             --------HHHhhCCEEEEecCcc
Confidence                    1 12478888887754

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=83.32  E-value=0.58  Score=34.33  Aligned_cols=32  Identities=16%  Similarity=0.181  Sum_probs=27.4

Q ss_pred             CcEEEECCChHHHHHHHHhh-cC-CcEEEEcCCC
Q 017664           17 KKVVVIGGGVGGSLLAYHIQ-SF-ADVVLIDEKE   48 (368)
Q Consensus        17 ~~vvIIGaG~aGl~aA~~L~-~g-~~v~lie~~~   48 (368)
                      ++|.+||+|--|-+.|..|. .+ ++|.+.+|++
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            36999999999999999875 44 8999999875

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=83.23  E-value=0.71  Score=34.44  Aligned_cols=35  Identities=29%  Similarity=0.250  Sum_probs=28.8

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      ++|.|||.|..|.-+|..|.+.....+|+.+++++
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            47999999999999999998755556788877654

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=83.19  E-value=1  Score=33.60  Aligned_cols=36  Identities=17%  Similarity=0.259  Sum_probs=30.0

Q ss_pred             hcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          137 KSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       137 ~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      ..+++++|+|+|-++--++..|.+  .+.+|+++.|..
T Consensus        16 ~~~k~vlIlGaGGaarai~~al~~--~g~~i~I~nRt~   51 (170)
T d1nyta1          16 RPGLRILLIGAGGASRGVLLPLLS--LDCAVTITNRTV   51 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSH
T ss_pred             CCCCEEEEECCcHHHHHHHHHhcc--cceEEEeccchH
Confidence            357899999999999988888886  356899998875

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=83.19  E-value=0.59  Score=35.83  Aligned_cols=35  Identities=37%  Similarity=0.316  Sum_probs=30.3

Q ss_pred             CCCCcEEEEC-CChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           14 VEKKKVVVIG-GGVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        14 ~~~~~vvIIG-aG~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      -+.++++|.| +|-.|..+|+.|. +|.+|++++|+.
T Consensus        21 l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          21 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            3568899999 5999999999887 599999999985

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=83.03  E-value=0.63  Score=40.15  Aligned_cols=35  Identities=31%  Similarity=0.587  Sum_probs=29.2

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK  175 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~  175 (368)
                      -.++|||+|.+|+-+|..|++ .++.+|.++++++.
T Consensus        25 yD~IIVGsG~aG~vlA~rLae-~~~~~VLlLEaG~~   59 (391)
T d1gpea1          25 YDYIIAGGGLTGLTVAAKLTE-NPKIKVLVIEKGFY   59 (391)
T ss_dssp             EEEEEECCSHHHHHHHHHHHT-STTCCEEEEESSCC
T ss_pred             eeEEEECcCHHHHHHHHHHHH-CCCCeEEEEcCCCC
Confidence            368999999999999999986 35579999998853

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=82.95  E-value=0.87  Score=33.97  Aligned_cols=97  Identities=20%  Similarity=0.265  Sum_probs=56.4

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEc
Q 017664          138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIET  217 (368)
Q Consensus       138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~  217 (368)
                      .+.+++|+|+|..|...+.....  .+.+|++++.+..        ..+.++..+.+ .++.....+-. ++        
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~--lGA~V~~~D~~~~--------~l~~l~~~~~~-~~~~~~~~~~~-l~--------   90 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVG--LGAQVQIFDINVE--------RLSYLETLFGS-RVELLYSNSAE-IE--------   90 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCHH--------HHHHHHHHHGG-GSEEEECCHHH-HH--------
T ss_pred             CCcEEEEECCChHHHHHHHHHhh--CCCEEEEEeCcHH--------HHHHHHHhhcc-cceeehhhhhh-HH--------
Confidence            36799999999999999988773  6899999987653        23334443333 34433222110 00        


Q ss_pred             CCCcEEecCEEEEcc---CCCCCchhhhccccccccCCCCcEEeC
Q 017664          218 SSGETIDTDCHFMCT---GKAMASSWLRETILKDSLDGRGRLMVD  259 (368)
Q Consensus       218 ~~g~~i~~d~vi~a~---G~~p~~~~~~~~~l~~~~~~~g~i~vd  259 (368)
                        ...-++|.||-+.   |.+ .+.++..+.+.  .=+.|-+.||
T Consensus        91 --~~~~~aDivI~aalipG~~-aP~lIt~~mv~--~Mk~GSVIVD  130 (168)
T d1pjca1          91 --TAVAEADLLIGAVLVPGRR-APILVPASLVE--QMRTGSVIVD  130 (168)
T ss_dssp             --HHHHTCSEEEECCCCTTSS-CCCCBCHHHHT--TSCTTCEEEE
T ss_pred             --HhhccCcEEEEeeecCCcc-cCeeecHHHHh--hcCCCcEEEE
Confidence              0123478888763   333 34455554442  1235677776

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.84  E-value=1.7  Score=31.94  Aligned_cols=33  Identities=12%  Similarity=0.174  Sum_probs=28.7

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      ++|.+||-|..|..+|..|.+  .+.+|++++|++
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~--~g~~v~~~d~~~   34 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLK--AGYLLNVFDLVQ   34 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH--TTCEEEEECSSH
T ss_pred             CEEEEEEEHHHHHHHHHHHHH--CCCeEEEEECch
Confidence            479999999999999999986  478999988874

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=82.11  E-value=0.78  Score=38.64  Aligned_cols=34  Identities=24%  Similarity=0.189  Sum_probs=29.6

Q ss_pred             CCCcEEEECC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664           15 EKKKVVVIGG-GVGGSLLAYHIQ-SFADVVLIDEKE   48 (368)
Q Consensus        15 ~~~~vvIIGa-G~aGl~aA~~L~-~g~~v~lie~~~   48 (368)
                      +++.|+|+|| |.-|-+.+..|. +|++|.++-|+.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~   37 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL   37 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCc
Confidence            5788999996 999999999886 699999997764

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=82.00  E-value=1.1  Score=33.93  Aligned_cols=35  Identities=23%  Similarity=0.234  Sum_probs=31.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCC
Q 017664           14 VEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKE   48 (368)
Q Consensus        14 ~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~   48 (368)
                      ...+++.|||.|..|-..|..|+. |.+|..+++.+
T Consensus        40 l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~   75 (181)
T d1qp8a1          40 IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP   75 (181)
T ss_dssp             CTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ccCceEEEeccccccccceeeeeccccccccccccc
Confidence            456889999999999999999985 99999999864

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=81.92  E-value=1.9  Score=34.99  Aligned_cols=58  Identities=19%  Similarity=0.222  Sum_probs=41.4

Q ss_pred             CCeEEEEcC-chhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEec
Q 017664          139 ANSVLIVGG-GPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILN  202 (368)
Q Consensus       139 ~~~v~VvG~-g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~  202 (368)
                      -++|+|.|+ |.+|..++..|.+  .|.+|+.+.|.+...   . .........+.+.+++++..
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~--~G~~V~~~~R~~~~~---~-~~~~~~~~~~~~~~v~~v~~   61 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASIS--LGHPTYVLFRPEVVS---N-IDKVQMLLYFKQLGAKLIEA   61 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHH--TTCCEEEECCSCCSS---C-HHHHHHHHHHHTTTCEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHh--CCCEEEEEECCCccc---c-hhHHHHHhhhccCCcEEEEe
Confidence            467999996 9999999999886  478999998865421   1 12233445667778887653

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=81.52  E-value=0.68  Score=37.07  Aligned_cols=33  Identities=21%  Similarity=0.294  Sum_probs=28.7

Q ss_pred             CCcEEEECCChHHHHHHHHhhc-CC-cEEEEcCCC
Q 017664           16 KKKVVVIGGGVGGSLLAYHIQS-FA-DVVLIDEKE   48 (368)
Q Consensus        16 ~~~vvIIGaG~aGl~aA~~L~~-g~-~v~lie~~~   48 (368)
                      ..+|+|||+|--|..+|..|.+ |. +++|+|...
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            5689999999999999999985 76 889999654

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=81.49  E-value=0.38  Score=35.58  Aligned_cols=24  Identities=29%  Similarity=0.423  Sum_probs=20.5

Q ss_pred             CCCCCcEEEECC-ChHHHHHHHHhh
Q 017664           13 LVEKKKVVVIGG-GVGGSLLAYHIQ   36 (368)
Q Consensus        13 ~~~~~~vvIIGa-G~aGl~aA~~L~   36 (368)
                      |.++.+|.|||| |..|.++|..|.
T Consensus         1 m~~p~KV~IiGA~G~VG~~~a~~l~   25 (154)
T d1y7ta1           1 MKAPVRVAVTGAAGQIGYSLLFRIA   25 (154)
T ss_dssp             CCCCEEEEESSTTSHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHH
Confidence            345569999997 999999999987

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=81.15  E-value=0.85  Score=35.74  Aligned_cols=32  Identities=25%  Similarity=0.472  Sum_probs=26.0

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRG  173 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~  173 (368)
                      .++|||+|+.|+.+|..+++ ...+.|.+++..
T Consensus         5 DviIIG~GpaGl~aA~~aa~-~g~k~V~iie~~   36 (238)
T d1aoga1           5 DLVVIGAGSGGLEAAWNAAT-LYKKRVAVIDVQ   36 (238)
T ss_dssp             SEEEECCSHHHHHHHHHHHH-TSCCCEEEEESC
T ss_pred             CEEEECCCHHHHHHHHHHHH-cCCCEEEEEEee
Confidence            58999999999999999886 344678888753

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=81.04  E-value=0.77  Score=39.44  Aligned_cols=33  Identities=30%  Similarity=0.618  Sum_probs=28.6

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664          141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP  174 (368)
Q Consensus       141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~  174 (368)
                      .++|||+|..|+-+|..|++ .++.+|.++++++
T Consensus        19 D~IIVGsG~aG~vlA~rLse-~~~~~VLvLEaG~   51 (385)
T d1cf3a1          19 DYIIAGGGLTGLTTAARLTE-NPNISVLVIESGS   51 (385)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-STTCCEEEEESSC
T ss_pred             EEEEECcCHHHHHHHHHHHH-CCCCeEEEECCCC
Confidence            68999999999999999986 3567999999885

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=80.92  E-value=1.2  Score=31.39  Aligned_cols=72  Identities=10%  Similarity=0.115  Sum_probs=44.8

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCC
Q 017664          140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSS  219 (368)
Q Consensus       140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~  219 (368)
                      |+++|+|.|..|.+++..|.    +.+|.+++..+.        .    .+.+++.|+.++.+..-.     ...+.-. 
T Consensus         1 kHivI~G~g~~g~~l~~~L~----~~~i~vi~~d~~--------~----~~~~~~~~~~~i~Gd~~~-----~~~L~~a-   58 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELR----GSEVFVLAEDEN--------V----RKKVLRSGANFVHGDPTR-----VSDLEKA-   58 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSC----GGGEEEEESCTT--------H----HHHHHHTTCEEEESCTTS-----HHHHHHT-
T ss_pred             CEEEEECCCHHHHHHHHHHc----CCCCEEEEcchH--------H----HHHHHhcCccccccccCC-----HHHHHHh-
Confidence            68999999999999999875    456777765543        1    234456788887653211     0011111 


Q ss_pred             CcEEecCEEEEccCC
Q 017664          220 GETIDTDCHFMCTGK  234 (368)
Q Consensus       220 g~~i~~d~vi~a~G~  234 (368)
                       ..-+|+.+++++.-
T Consensus        59 -~i~~A~~vi~~~~~   72 (129)
T d2fy8a1          59 -NVRGARAVIVNLES   72 (129)
T ss_dssp             -TCTTCSEEEECCSS
T ss_pred             -hhhcCcEEEEeccc
Confidence             12248888887754