Citrus Sinensis ID: 017670

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
Protein Sequence
MKSSLGEKVSSIGGAQQGEIVRTIKPGITFGDKIASSSKVGFEKSKAKSSKALETKEEVKSFKDPNELYNGPSNKAKFDSSRKVFDDKIKNRVQKLGLDSNVHGPKPTLATIADEDKSKTKRAVAKDPHGIDKGPCKKPKLDEELLKPTSGKLVEASSLQPSIVENKSNKQIVEVTRRPSLDRSKWFKELPWEERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLALDKLKFQMQREMREAVSTSHCSQPNSLEYDMAIEWSLLQERLDCAWKKLYEQQELELKKLKVKLKSK
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEcccccccccccccccccccccHHHcccccccHHHHHHccccccccccccccccccccccEEEccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccEEEccccccccccccccccHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHHcccccEEccccccccccccEEEEEEEcHHHHHHHHHHHHccEEEEEcccEEEEEccccccccccccccccEEHHHHHHHHHHHHHHHHHccccccccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccEEEEcccccccccHHccHcccccEEEcccccccccEEEEEccccccccccccccHEEEEccccEcccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccEEEEcccccccHcHHHccccHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHcccEEEccccccccccccEEEEEEccHHHHHHHHHHHcccEEEEEcccEEEEEcccccccccccccEEEEEHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mksslgekvssiggaqqgeivrtikpgitfgdkiassskvgfekskaksskaletkeevksfkdpnelyngpsnkakfdssrKVFDDKIKNRVQklgldsnvhgpkptlatiadedksktkravakdphgidkgpckkpkldeellkptsgklveasslqpsivenksnkqivevtrrpsldrskwfkelpWEERIRVAHEHGTLVVlenldpsytsTVVEDLVWHAFKEncsakmiprvafaspyfgqsfVIFKTREVAELVVTKLEEGCLLlsngrpllgsigtpcftgkqskfvghLALDKLKFQMQREMREavstshcsqpnsleYDMAIEWSLLQERLDCAWKKLYEQQELELKKLKVKLKSK
Flexible Loop (DISEMBL)
mksslgekvssiggaqqgeivrtikpgitfgdkiassskvgfekskaksskaletkeevksfkdpnelyngpsnkakfdssrKVFDDKIKNRvqklgldsnvhgpkptlatiadedksktkravakdphgidkgpckkpkldEELLKPTSGKlveasslqpsivenksnkqivevtrrpsldrskwfkelpweERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLALDKLKFQMQREMREAvstshcsqpnsLEYDMAIEWSLLQERLDCAWKKLYEQQElelkklkvklksk
Low Complexity Region (SEG)
MKSSLGEKVSSIGGAQQGEIVRTIKPGITFGDKIASSSKVGFekskaksskaletkeeVKSFKDPNELYNGPSNKAKFDSSRKVFDDKIKNRVQKLGLDSNVHGPKPTLATIADEDKSKTKRAVAKDPHGIDKGPCkkpkldeellkpTSGKLVEASSLQPSIVENKSNKQIVEVTRRPSLDRSKWFKELPWEERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLALDKLKFQMQREMREAVSTSHCSQPNSLEYDMAIEWSLLQERLDCAWkklyeqqelelkklkvklksk
Disordered region (IsUnstruct)
*******************IVRTIKPGITFG*******************************************************************************************************************************************************RSKWFKELPWEERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLALDKLKFQM*****************SLEYDMAIEWSLLQERLDCAWKKLYEQQEL************
Disordered Region (DISOPRED)
*****************************************************************************************************************************************************************************************WFKELPWEERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLALDKL****************CSQPNSLEYDMAIEWSLLQERLDCAW**************KV*L***
Disordered Region (DISEMBL)
*************GAQQGEIVRTIKPGITFGDKIASS***********************SFKDPNELYNGPSNKAKFDSSRKVFDDKIKNRVQKLGLDSNVHGPKPTLATIADE**************GIDKGPCKKPKLDEELLKPTSGKLVEASSLQPSIVENKSNKQIVEVTRRPSLDRSKWFKELPWEERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLALDKLKFQMQ*************QPNSLEYDMAIEWSLLQERLDCAWKKLYEQQELELKKLKVKLKSK
Disordered Region (DISPRO)
****************QGEIVRTIKPGITFGDKIASSSKVGFEKSKAKSSKALETKEEVKSFKDPNELYNGPSNKAKFDSSRKVFD**IKNRV*K*************************************************************************NKQIVEVTRRPSLDRSKWFKELPWEERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLALDKLKFQMQREMREAVSTSHCSQPNSLEYDMAIEWSLLQERLDCAWKKLYEQQELELKKLKVKL***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKSSLGEKVSSIGGAQQGEIVRTIKPGITFGDKIASSSKVGFEKSKAKSSKALETKEEVKSFKDPNELYNGPSNKAKFDSSRKVFDDKIKNRVQKLGLDSNVHGPKPTLATIADEDKSKTKRAVAKDPHGIDKGPCKKPKLDEELLKPTSGKLVEASSLQPSIVENKSNKQIVEVTRRPSLDRSKWFKELPWEERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLALDKLKFQMQREMREAVSTSHCSQPNSLEYDMAIEWSLLQERLDCAWKKLYEQQELELKKLKVKLKSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	368
449437312	600	PREDICTED: uncharacterized protein LOC10	0.953	0.585	0.494	2e-87
449509146	600	PREDICTED: uncharacterized protein LOC10	0.953	0.585	0.491	6e-87
224141801	542	predicted protein [Populus trichocarpa]	0.885	0.601	0.516	3e-86
296081917	628	unnamed protein product [Vitis vinifera]	0.991	0.581	0.431	4e-83
255551070	730	hypothetical protein RCOM_0803370 [Ricin	0.668	0.336	0.560	5e-76
357466625	672	hypothetical protein MTR_3g109470 [Medic	0.839	0.459	0.445	1e-69
147772807	417	hypothetical protein VITISV_042543 [Viti	0.437	0.386	0.689	4e-66
294464714	328	unknown [Picea sitchensis]	0.663	0.743	0.437	3e-59
297811263	695	hypothetical protein ARALYDRAFT_487983 [	0.429	0.227	0.575	2e-48
357451135	582	hypothetical protein MTR_2g062470 [Medic	0.546	0.345	0.414	2e-46

>gi|449437312|ref|XP_004136436.1| PREDICTED: uncharacterized protein LOC101208860 [Cucumis sativus]

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 185/374 (49%), Positives = 244/374 (65%), Gaps = 23/374 (6%)

Query: 2   KSSLGEKVSSIG---GAQQGEIVRTIKPGITFGDKIASSSKVGFEKSKAKSSKALETKEE 58
           KSS  EK S+     G   G+    IK     GDK+    K+    S  K   A + +  
Sbjct: 243 KSSNEEKSSAHAIERGIGMGKTSSIIKHENILGDKVPPKLKI---DSNEKPGNAKDVEGR 299

Query: 59  VKSFKDPNELYNGPSNKAKFDSSRKVFDDKIKNRVQKLGLDSNVHGPKPTLAT----IAD 114
           VKS ++  E+ + P+ K K DSS ++   K +N ++KLG+D   H    TLA+    +  
Sbjct: 300 VKSLRESAEVEHRPAKKTKLDSSVQLSPGKTENDIEKLGVD---HNNGDTLASSPKALVS 356

Query: 115 EDKSKTKRAVAKDPHGIDKGPCKKPKLDEELLKPTSGKLVEASSLQPSIVENKSNKQIVE 174
           ED S+ K    KD H       KKPKLDE+  K ++GK ++ASSL         + ++VE
Sbjct: 357 EDASRAKNV--KDSHETKGSFLKKPKLDEKPTKVSNGKNLKASSL--------IHGEVVE 406

Query: 175 VTRRPSLDRSKWFKELPWEERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSA 234
           VTRRP  DRS+WFK LPWEERI+ AHE GTLV+++NLDPSYTS  VED+VWHAF E+C+A
Sbjct: 407 VTRRPDADRSRWFKGLPWEERIKDAHEQGTLVLIQNLDPSYTSGEVEDIVWHAFNESCTA 466

Query: 235 KMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQS 294
           KMI + A + P+ GQ++V+FKT+E AE VV KL EGCLLL+NG  L+GS  TP  + K+ 
Sbjct: 467 KMIQKTANSMPHIGQAYVVFKTKEAAEKVVRKLHEGCLLLANGSVLVGSFETPHLSSKKQ 526

Query: 295 KFVGHLALDKLKFQMQREMREAVSTSHCSQPNSLEYDMAIEWSLLQERLDCAWKKLYEQQ 354
            F GH  +DKL+ QMQREM+ AVSTSHCSQPN++EYDMA+EW LLQER +   K+L++QQ
Sbjct: 527 TFFGHHCIDKLRHQMQREMKGAVSTSHCSQPNTIEYDMAMEWCLLQERSELVGKQLFKQQ 586

Query: 355 ELELKKLKVKLKSK 368
           E EL+KLK KLKS+
Sbjct: 587 EEELRKLKSKLKSR 600

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449509146|ref|XP_004163508.1| PREDICTED: uncharacterized protein LOC101231100 [Cucumis sativus]

 Score =  327 bits (838), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 184/374 (49%), Positives = 243/374 (64%), Gaps = 23/374 (6%)

Query: 2   KSSLGEKVSSIG---GAQQGEIVRTIKPGITFGDKIASSSKVGFEKSKAKSSKALETKEE 58
           KSS  EK S+     G   G+    IK     GDK+    K+    S  K   A + +  
Sbjct: 243 KSSNEEKSSAHAIERGIGMGKTSSIIKHENILGDKVPPKLKI---DSNEKPGNAKDVEGR 299

Query: 59  VKSFKDPNELYNGPSNKAKFDSSRKVFDDKIKNRVQKLGLDSNVHGPKPTLAT----IAD 114
            KS ++  E+ + P+ K K DSS ++   K +N ++KLG+D   H    TLA+    +  
Sbjct: 300 AKSLRESAEVEHRPAKKTKLDSSVQLSPGKTENDIEKLGVD---HNNGDTLASSPKALVS 356

Query: 115 EDKSKTKRAVAKDPHGIDKGPCKKPKLDEELLKPTSGKLVEASSLQPSIVENKSNKQIVE 174
           ED S+ K    KD H       KKPKLDE+  K ++GK ++ASSL         + ++VE
Sbjct: 357 EDASRAKNV--KDSHETKGSFLKKPKLDEKPTKVSNGKNLKASSL--------IHGEVVE 406

Query: 175 VTRRPSLDRSKWFKELPWEERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSA 234
           VTRRP  DRS+WFK LPWEERI+ AHE GTLV+++NLDPSYTS  VED+VWHAF E+C+A
Sbjct: 407 VTRRPDADRSRWFKGLPWEERIKDAHEQGTLVLIQNLDPSYTSGEVEDIVWHAFNESCTA 466

Query: 235 KMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQS 294
           KMI + A + P+ GQ++V+FKT+E AE VV KL EGCLLL+NG  L+GS  TP  + K+ 
Sbjct: 467 KMIQKTANSMPHIGQAYVVFKTKEAAEKVVRKLHEGCLLLANGSVLVGSFETPHLSSKKQ 526

Query: 295 KFVGHLALDKLKFQMQREMREAVSTSHCSQPNSLEYDMAIEWSLLQERLDCAWKKLYEQQ 354
            F GH  +DKL+ QMQREM+ AVSTSHCSQPN++EYDMA+EW LLQER +   K+L++QQ
Sbjct: 527 TFFGHHCIDKLRHQMQREMKGAVSTSHCSQPNTIEYDMAMEWCLLQERSELVGKQLFKQQ 586

Query: 355 ELELKKLKVKLKSK 368
           E EL+KLK KLKS+
Sbjct: 587 EEELRKLKSKLKSR 600

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141801|ref|XP_002324251.1| predicted protein [Populus trichocarpa] gi|222865685|gb|EEF02816.1| predicted protein [Populus trichocarpa]

 Score =  325 bits (832), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 175/339 (51%), Positives = 226/339 (66%), Gaps = 13/339 (3%)

Query: 30  FGDKIASSSKVGFEKSKAKSSKALETKEEVKSFKDPNELYNGPSNKAKFDSSRKVFDDKI 89
            G+K ASSS V F++    + + +  +EE+K  K   +L +    KAK D S K   D  
Sbjct: 217 LGEKAASSSGVQFDEVAKTNERQVLVEEELKVAKASGDLDDRSCKKAKLDDSAKASHDNK 276

Query: 90  KNRVQKLGLDSNVHGPKPTLATIADEDKSKTKRAVAKDPHGIDKGPCKKPKLDEELLKPT 149
               QKL  DSN    K  +A I    + K++  + KDP   +    +KPK DE+L    
Sbjct: 277 VKSTQKLRHDSNDSSSK-AVAQITPAAEDKSRPNLTKDPQETNNALSEKPKPDEKL---A 332

Query: 150 SGKLVEASSLQPSIVENKSNKQIVEVTRRPSLDRSKWFKELPWEERIRVAHEHGTLVVLE 209
           +GK  EAS  QPS   +K++ +I E TRRP+          PWEE ++ AHE GTLV+L+
Sbjct: 333 NGKFPEASLRQPSEEGSKTSYKIQEPTRRPAT---------PWEETMQTAHEQGTLVLLQ 383

Query: 210 NLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEE 269
           NLDPSYTS  VEDL+W AFK++C+AKMI R A +SP+ GQ+FVIF+ REVAE+ V KL+E
Sbjct: 384 NLDPSYTSAEVEDLIWQAFKQSCTAKMIQRTARSSPHSGQAFVIFQKREVAEMAVAKLDE 443

Query: 270 GCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLALDKLKFQMQREMREAVSTSHCSQPNSLE 329
            CL+LSNGRPL+GSI  PCF GKQS F GHL ++KL+  MQREM+EAVSTSHCSQPN+LE
Sbjct: 444 VCLMLSNGRPLVGSIAAPCFPGKQSTFFGHLTINKLRIHMQREMKEAVSTSHCSQPNTLE 503

Query: 330 YDMAIEWSLLQERLDCAWKKLYEQQELELKKLKVKLKSK 368
           YDMA+EW LLQ+R D A +KL +QQE EL+KL+  LKSK
Sbjct: 504 YDMAMEWCLLQDRSDLALRKLRQQQEQELRKLRATLKSK 542

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081917|emb|CBI20922.3| unnamed protein product [Vitis vinifera]

 Score =  314 bits (805), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 188/436 (43%), Positives = 254/436 (58%), Gaps = 71/436 (16%)

Query: 1   MKSSLGEKVSSIGG--AQQGEIVRTIKPGITF------GDKIASSSKVGFEKSKAKSSKA 52
           +K SL E  SS+GG  A   ++V      I+       GD   S  +V   K   K  K 
Sbjct: 196 VKVSLVEHKSSLGGKHASDADMVLDNMTNISVERENIVGD--GSKLQVDSVKYDDKVGKV 253

Query: 53  L----ETKEEVKSFKDPNELYNGPSNKAKFDSSRKVFDDKIKNRVQKLGLDSNVHGPKPT 108
           L    E +E+VKS +D   L + PS +AK  SS ++ +D+    +QK  +DS+V   K +
Sbjct: 254 LVNQVEVEEKVKSTRDSGLLDSRPSKRAKVSSSTELSEDRNNRSLQKSNIDSHVKEMKAS 313

Query: 109 LATIADEDKSKTKRAVAKDPHGIDKGPCKKPKLDEELLKPTSGKLVEASSLQPSIVENKS 168
           ++T+           V KD   ++K   KK K  E++ K ++G L++A + +   V+ K 
Sbjct: 314 VSTVTTTKDKTKLDLV-KDSPSLEKEASKKLKSYEKMTKLSNGNLIKAFARRSPSVDTKI 372

Query: 169 NKQIVEVTRRP-------------SLDRSKW----------------------------- 186
             QI+EVTRRP             SL+  +W                             
Sbjct: 373 EGQIMEVTRRPNAVSCIQSSSGPTSLEDPRWVKAMEAFVAPGPTRLDDCRDPPQSLEGNK 432

Query: 187 --------------FKELPWEERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENC 232
                         F+ LPWEER++ AH+ GTLV+L+NLDP+YTS  VED+VWH FKE+C
Sbjct: 433 AHIGVALPSDRSRWFRGLPWEERMQTAHQQGTLVLLQNLDPAYTSAEVEDIVWHGFKESC 492

Query: 233 SAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGK 292
           +A+MI   A +SP+ GQ+FVIFKTR+ A   + KLEEGCLLLSNGRPL+GS GTPCF GK
Sbjct: 493 TARMIQHTAISSPHSGQAFVIFKTRDAAVSAIRKLEEGCLLLSNGRPLVGSFGTPCFPGK 552

Query: 293 QSKFVGHLALDKLKFQMQREMREAVSTSHCSQPNSLEYDMAIEWSLLQERLDCAWKKLYE 352
           QS FVGHL++DK+K QMQREM++AVSTSHCSQPN++EY+MA++W L QER D  WKKLY+
Sbjct: 553 QSTFVGHLSIDKVKVQMQREMKQAVSTSHCSQPNTIEYEMAMDWCLQQERSDSCWKKLYK 612

Query: 353 QQELELKKLKVKLKSK 368
           +Q  EL+KLK  LKSK
Sbjct: 613 RQGDELRKLKASLKSK 628

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551070|ref|XP_002516583.1| hypothetical protein RCOM_0803370 [Ricinus communis] gi|223544403|gb|EEF45924.1| hypothetical protein RCOM_0803370 [Ricinus communis]

 Score =  290 bits (743), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 138/246 (56%), Positives = 180/246 (73%)

Query: 120 TKRAVAKDPHGIDKGPCKKPKLDEELLKPTSGKLVEASSLQPSIVENKSNKQIVEVTRRP 179
           +KR + KDP+  +    KK KLDE+L K  +GKL   S  + S   + ++ +I+EVTRRP
Sbjct: 480 SKRKLVKDPNETEILSFKKRKLDEKLTKFANGKLPRESPREVSNDVSNTDSKILEVTRRP 539

Query: 180 SLDRSKWFKELPWEERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPR 239
             D+ KWFK LPWEERI+ AH  G +V+L+NLDPS+T   VED+VWHA K++C+AKMIP 
Sbjct: 540 EADKIKWFKGLPWEERIKAAHAEGRIVLLQNLDPSFTGLEVEDIVWHALKQSCTAKMIPC 599

Query: 240 VAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGH 299
            AF+SP+ GQ+F IFKTRE AE  VTKL+EGCL+ S GRPL+GSI    F GK S + GH
Sbjct: 600 TAFSSPHSGQAFAIFKTREAAETAVTKLDEGCLMTSYGRPLVGSIAKLSFPGKPSTYFGH 659

Query: 300 LALDKLKFQMQREMREAVSTSHCSQPNSLEYDMAIEWSLLQERLDCAWKKLYEQQELELK 359
           +++DK + QMQR MREAVSTSHCSQPN++EYDMA+EW  LQE+ +  W+ LY+Q   EL+
Sbjct: 660 MSIDKTRHQMQRVMREAVSTSHCSQPNTIEYDMALEWCFLQEQTNQEWELLYKQHGKELR 719

Query: 360 KLKVKL 365
           KL+  L
Sbjct: 720 KLESTL 725

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466625|ref|XP_003603597.1| hypothetical protein MTR_3g109470 [Medicago truncatula] gi|355492645|gb|AES73848.1| hypothetical protein MTR_3g109470 [Medicago truncatula]

 Score =  269 bits (688), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 143/321 (44%), Positives = 206/321 (64%), Gaps = 12/321 (3%)

Query: 36  SSSKVGFEKSKAKSSKALETKEEVKSFKDPNELYNGPSNKAKFDS-SRKVFDDKIKNRVQ 94
           +S K  +  S AK++  ++ + +V    D  E+   PS K K D+ S K+  DK+ +   
Sbjct: 347 TSEKDKYNFSSAKTTNNVKNRRDV----DVKEV---PSKKLKIDTTSVKLSSDKLADMQI 399

Query: 95  KLGLDSNVHGPKPTLATIADEDKSKTKRAVAKDPHGIDKGPCKKPKLDEELLKPTSGKLV 154
              L+      K      +  +  + +R    D   + + P KK K+D    K +SGKL 
Sbjct: 400 NKRLEERKASFKEKYGVSSRTNHVQNQRNHDDD---VKEAPSKKLKIDTMHTKLSSGKLR 456

Query: 155 EASSLQPSIVENKSNKQIVEVTRRPSLDRSKWFKELPWEERIRVAHEHGTLVVLENLDPS 214
           + SS     +E+K +  + +VT+RP +DRSKWFK +PWEER++ A+E G LV+LENLDPS
Sbjct: 457 KESSTTSPNLEHKQDYSVTDVTQRPDVDRSKWFKPMPWEERMKDAYEQGRLVLLENLDPS 516

Query: 215 YTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLL 274
            TS+ V+D++   FKE C+AK+I + A++SP  GQ+F IFK +E AE V+  LEEGC L+
Sbjct: 517 LTSSEVQDIILDGFKERCTAKLIQKTAYSSPNSGQAFAIFKRKEAAESVIRNLEEGCFLM 576

Query: 275 SNGRPLLGSIGT-PCFTGKQSKFVGHLALDKLKFQMQREMREAVSTSHCSQPNSLEYDMA 333
           SNGRPL+GS G  PC   K+  F GH  +D+L+ Q QREM++A+STSHCSQPN++EYDMA
Sbjct: 577 SNGRPLVGSFGRLPCIPEKKPTFYGHHVIDQLRLQTQREMKDAISTSHCSQPNNIEYDMA 636

Query: 334 IEWSLLQERLDCAWKKLYEQQ 354
           +EW LLQER D +W+KLY++Q
Sbjct: 637 VEWCLLQERADKSWRKLYQRQ 657

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147772807|emb|CAN69406.1| hypothetical protein VITISV_042543 [Vitis vinifera]

 Score =  258 bits (658), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 111/161 (68%), Positives = 137/161 (85%)

Query: 191 PWEERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQS 250
           PWEER++ AH+ GTLV+L+NLDP+YTS  VED+VWH FKE+C+A+MI R   +SP+ GQ+
Sbjct: 206 PWEERMQTAHQQGTLVLLQNLDPAYTSAEVEDIVWHGFKESCTARMIQRTTISSPHSGQA 265

Query: 251 FVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLALDKLKFQMQ 310
           FVIFKTR+ A   + KLEEGCLLLSNGRPL+GS GTPCF GKQS FVGHL++DK+K QMQ
Sbjct: 266 FVIFKTRDAAVSAIRKLEEGCLLLSNGRPLVGSFGTPCFPGKQSTFVGHLSIDKVKVQMQ 325

Query: 311 REMREAVSTSHCSQPNSLEYDMAIEWSLLQERLDCAWKKLY 351
           REM++AVSTSHCSQPN++EY+MA++W L QER D  WKKLY
Sbjct: 326 REMKQAVSTSHCSQPNTIEYEMAMDWCLQQERSDSCWKKLY 366

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294464714|gb|ADE77864.1| unknown [Picea sitchensis]

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 113/258 (43%), Positives = 176/258 (68%), Gaps = 14/258 (5%)

Query: 115 EDKSKTKRAVAKDPHGIDKGPCKKPKLDEELLKPTSGKLVEASSLQPSIVE-NKSNK--- 170
           ED +K K    K+  G +K   KK K+D+  +K + G     S   P + + NK  K   
Sbjct: 61  EDVAKRKIDSKKEVLGTEKKLVKKAKVDDTAVKASEG----LSQTTPQLTDLNKQKKLGG 116

Query: 171 -QIVEVTRRPSLDRSKWFKELPWEERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFK 229
            +I+E+ ++P ++ ++WFK LPW+ER+R  +E   ++ L+N DPSYTS+ +ED++WH F 
Sbjct: 117 REIIEIAKKPEVESNRWFKGLPWDERLRKGYEQKAVIRLQNFDPSYTSSEIEDIMWHIFG 176

Query: 230 ENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCF 289
           E C+AK+IPR AF++   G++FVIF+T+E A++VV KL+E  L+LS+GRPL+ +  T   
Sbjct: 177 ERCTAKVIPRTAFSNLKCGEAFVIFRTKEGADIVVKKLDEAFLMLSDGRPLIATKATAPV 236

Query: 290 TGKQSKFVGHLALDKLKFQMQR-----EMREAVSTSHCSQPNSLEYDMAIEWSLLQERLD 344
              + KF GH+ ++K + Q+ R     ++R+AVSTSHCSQPN++EY+MA++W LLQE+ +
Sbjct: 237 ASGKPKFAGHICIEKHRLQLHRSHQMEDIRKAVSTSHCSQPNTIEYEMAMDWRLLQEKSE 296

Query: 345 CAWKKLYEQQELELKKLK 362
           C WK+LY+Q+ LEL K+K
Sbjct: 297 CWWKELYKQENLELVKVK 314

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811263|ref|XP_002873515.1| hypothetical protein ARALYDRAFT_487983 [Arabidopsis lyrata subsp. lyrata] gi|297319352|gb|EFH49774.1| hypothetical protein ARALYDRAFT_487983 [Arabidopsis lyrata subsp. lyrata]

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 92/160 (57%), Positives = 119/160 (74%), Gaps = 2/160 (1%)

Query: 183 RSKWFKELPWEERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAF 242
           +SKWF+ LPWEE +R A + GT+V+L+NLDP+YTS  VED+V+ A  E C A+MI R + 
Sbjct: 505 KSKWFRSLPWEESMREAEKKGTVVLLQNLDPTYTSDEVEDIVYSALNEQCEARMIERTSV 564

Query: 243 ASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLAL 302
             P+ G++ VIFKTREVAE V+ +L+EGCLLLS+GRPL+ S       GK S F GH+ L
Sbjct: 565 TIPHVGEALVIFKTREVAERVIRRLDEGCLLLSSGRPLVASFAKITPPGKPSSFSGHIKL 624

Query: 303 DKLKFQMQREMREAVSTSHCSQPNSLEYDMAIEWSLLQER 342
            K   Q +REMR+AV+TSHCSQPN+LE+DMA+EW L Q R
Sbjct: 625 HKT--QTRREMRDAVATSHCSQPNNLEFDMAMEWCLHQAR 662

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357451135|ref|XP_003595844.1| hypothetical protein MTR_2g062470 [Medicago truncatula] gi|355484892|gb|AES66095.1| hypothetical protein MTR_2g062470 [Medicago truncatula]

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 94/227 (41%), Positives = 137/227 (60%), Gaps = 26/227 (11%)

Query: 167 KSNKQIVEVTRRPSLDRSKWFKELPWEERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWH 226
           K  +++ EVT RP+ ++ KWFK++PWEER++ A E GTLV+L NLDPSYTS  VEDLVWH
Sbjct: 348 KPTRKVTEVTERPNAEKRKWFKKMPWEERLQTAQELGTLVLLSNLDPSYTSFEVEDLVWH 407

Query: 227 AFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP------- 279
           A KE   A+MI     ++ Y+G++  IF++++     +++L   CL+L +GR        
Sbjct: 408 ALKEKVEARMIELSPTSNTYYGRALAIFRSKDAGANAISELNRRCLILEDGRKDRVLARR 467

Query: 280 -------------------LLGSIGTPCFTGKQSKFVGHLALDKLKFQMQREMREAVSTS 320
                              +   +GT     KQS F+GHL++ +     QREMR AVSTS
Sbjct: 468 ILRFYVPRHLHRASTSFQVVTARMGTVSDPVKQSTFIGHLSISRAVLHKQREMRNAVSTS 527

Query: 321 HCSQPNSLEYDMAIEWSLLQERLDCAWKKLYEQQELELKKLKVKLKS 367
           HCSQPN++EY MAIEW+   ++ +  WK L E+Q  E+  +K KL++
Sbjct: 528 HCSQPNNIEYAMAIEWTHQYDKSEACWKALCEKQMKEIDDVKSKLRT 574

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00180344 hypothetical protein (542 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	368
PF00076	70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	98.99
KOG0533	243	consensus RRM motif-containing protein [RNA proces	98.95
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	98.68
smart00362	72	RRM_2 RNA recognition motif.	98.47
cd00590	74	RRM RRM (RNA recognition motif), also known as RBD	98.36
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	98.36
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	98.29
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	98.25
smart00360	71	RRM RNA recognition motif.	98.23
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	98.22
PF14259	70	RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or	98.16
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	98.11
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	98.1
PLN03120	260	nucleic acid binding protein; Provisional	98.03
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	98.0
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	98.0
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	97.98
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	97.93
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	97.91
COG0724	306	RNA-binding proteins (RRM domain) [General functio	97.88
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	97.86
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	97.81
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	97.77
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	97.69
KOG0121	153	consensus Nuclear cap-binding protein complex, sub	97.66
PLN03121	243	nucleic acid binding protein; Provisional	97.61
KOG0131	203	consensus Splicing factor 3b, subunit 4 [RNA proce	97.51
smart00361	70	RRM_1 RNA recognition motif.	97.5
KOG0114	124	consensus Predicted RNA-binding protein (RRM super	97.43
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	97.42
KOG0110	725	consensus RNA-binding protein (RRM superfamily) [G	97.18
KOG0107	195	consensus Alternative splicing factor SRp20/9G8 (R	97.12
KOG0123	369	consensus Polyadenylate-binding protein (RRM super	96.97
KOG0117	506	consensus Heterogeneous nuclear ribonucleoprotein	96.96
PLN03213	759	repressor of silencing 3; Provisional	96.81
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	96.74
KOG4207	256	consensus Predicted splicing factor, SR protein su	96.71
KOG0148	321	consensus Apoptosis-promoting RNA-binding protein	96.58
KOG0153	377	consensus Predicted RNA-binding protein (RRM super	96.54
KOG0117	506	consensus Heterogeneous nuclear ribonucleoprotein	96.54
KOG4206	221	consensus Spliceosomal protein snRNP-U1A/U2B [RNA	96.37
KOG0148	321	consensus Apoptosis-promoting RNA-binding protein	96.19
KOG0123	369	consensus Polyadenylate-binding protein (RRM super	95.96
KOG4209	231	consensus Splicing factor RNPS1, SR protein superf	95.7
KOG0108	435	consensus mRNA cleavage and polyadenylation factor	95.67
KOG0122	270	consensus Translation initiation factor 3, subunit	95.65
KOG0127	678	consensus Nucleolar protein fibrillarin NOP77 (RRM	95.43
KOG0127	678	consensus Nucleolar protein fibrillarin NOP77 (RRM	95.15
KOG1548	382	consensus Transcription elongation factor TAT-SF1	94.97
KOG4212	608	consensus RNA-binding protein hnRNP-M [RNA process	94.79
PF04059	97	RRM_2: RNA recognition motif 2; InterPro: IPR00720	94.52
KOG0131	203	consensus Splicing factor 3b, subunit 4 [RNA proce	94.49
KOG0130	170	consensus RNA-binding protein RBM8/Tsunagi (RRM su	93.64
PF11608	90	Limkain-b1: Limkain b1; InterPro: IPR024582 This e	93.5
PF08777	105	RRM_3: RNA binding motif; InterPro: IPR014886 This	92.99
KOG0106	216	consensus Alternative splicing factor SRp55/B52/SR	92.16
PF03467	176	Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120	91.97
KOG4211	510	consensus Splicing factor hnRNP-F and related RNA-	91.62
COG5175	480	MOT2 Transcriptional repressor [Transcription]	91.47
KOG0110	725	consensus RNA-binding protein (RRM superfamily) [G	91.34
KOG0149	247	consensus Predicted RNA-binding protein SEB4 (RRM	91.32
KOG0144	510	consensus RNA-binding protein CUGBP1/BRUNO (RRM su	91.23
KOG0147	549	consensus Transcriptional coactivator CAPER (RRM s	88.92
KOG0151	877	consensus Predicted splicing regulator, contains R	88.34
KOG0115	275	consensus RNA-binding protein p54nrb (RRM superfam	86.86
KOG0105	241	consensus Alternative splicing factor ASF/SF2 (RRM	85.71
KOG1365	508	consensus RNA-binding protein Fusilli, contains RR	84.19
KOG4660	549	consensus Protein Mei2, essential for commitment t	84.14
KOG0145	360	consensus RNA-binding protein ELAV/HU (RRM superfa	83.87
KOG4211	510	consensus Splicing factor hnRNP-F and related RNA-	83.58
KOG0120	500	consensus Splicing factor U2AF, large subunit (RRM	82.63

>PF00076 RRM_1: RNA recognition motif

Probab=98.99  E-value=7.5e-10  Score=78.88  Aligned_cols=69  Identities=28%  Similarity=0.321  Sum_probs=61.9

Q ss_pred             EEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          206 VVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       206 V~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      |||.||.+.+|..||.++|.+.+.. +.+++++.  .+..+.|.|||.|.+.++|+.|+..|++..+   +|++|
T Consensus         1 l~v~nlp~~~t~~~l~~~f~~~g~i-~~~~~~~~--~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~---~~~~i   69 (70)
T PF00076_consen    1 LYVGNLPPDVTEEELRDFFSQFGKI-ESIKVMRN--SSGKSKGYAFVEFESEEDAEKALEELNGKKI---NGRKI   69 (70)
T ss_dssp             EEEESETTTSSHHHHHHHHHTTSTE-EEEEEEEE--TTSSEEEEEEEEESSHHHHHHHHHHHTTEEE---TTEEE
T ss_pred             cEEcCCCCcCCHHHHHHHHHHhhhc-cccccccc--ccccccceEEEEEcCHHHHHHHHHHcCCCEE---CccCc
Confidence            7999999999999999999995555 77777776  5678999999999999999999999999877   99886

(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....

>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]

Probab=98.95  E-value=1.2e-09  Score=103.13  Aligned_cols=74  Identities=27%  Similarity=0.283  Sum_probs=66.3

Q ss_pred             Hhcc-cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCC--CCCceEEEEEechHHHHHHHHhhccceeeecC
Q 017670          200 HEHG-TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFAS--PYFGQSFVIFKTREVAELVVTKLEEGCLLLSN  276 (368)
Q Consensus       200 ~E~G-tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~--p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~  276 (368)
                      .+.| +.|+|.||+++|+++||++||.+-+..+..+     +||+-  +..|.|.|+|.++++|+.||.+||++.|   |
T Consensus        79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~-----vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~l---d  150 (243)
T KOG0533|consen   79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVA-----VHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVAL---D  150 (243)
T ss_pred             cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEe-----eccCCCCCCCccceeeecchHhHHHHHHHhcCccc---C
Confidence            3455 8899999999999999999999988888888     88854  7779999999999999999999999877   9


Q ss_pred             Cceee
Q 017670          277 GRPLL  281 (368)
Q Consensus       277 GRPL~  281 (368)
                      |+||-
T Consensus       151 G~~mk  155 (243)
T KOG0533|consen  151 GRPMK  155 (243)
T ss_pred             Cceee
Confidence            99964

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=98.68  E-value=6.6e-08  Score=83.32  Aligned_cols=88  Identities=17%  Similarity=0.092  Sum_probs=70.4

Q ss_pred             HHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCC
Q 017670          198 VAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG  277 (368)
Q Consensus       198 ~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G  277 (368)
                      .+-+.+|.|||.||++.+|.+||+++|.+.+. -...++ +....+..+-|.|||.|.+.++|+.||..||...|   +|
T Consensus        29 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~-I~~v~i-~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i---~G  103 (144)
T PLN03134         29 SLRLMSTKLFIGGLSWGTDDASLRDAFAHFGD-VVDAKV-IVDRETGRSRGFGFVNFNDEGAATAAISEMDGKEL---NG  103 (144)
T ss_pred             cccCCCCEEEEeCCCCCCCHHHHHHHHhcCCC-eEEEEE-EecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE---CC
Confidence            34577899999999999999999999988553 333332 33334457789999999999999999999998877   99


Q ss_pred             ceeeeccCCCCCC
Q 017670          278 RPLLGSIGTPCFT  290 (368)
Q Consensus       278 RPL~~S~g~~~~p  290 (368)
                      |+|.........+
T Consensus       104 r~l~V~~a~~~~~  116 (144)
T PLN03134        104 RHIRVNPANDRPS  116 (144)
T ss_pred             EEEEEEeCCcCCC
Confidence            9999887765444

>smart00362 RRM_2 RNA recognition motif

Probab=98.47  E-value=8.8e-07  Score=60.97  Aligned_cols=70  Identities=29%  Similarity=0.312  Sum_probs=57.1

Q ss_pred             EEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670          206 VVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG  282 (368)
Q Consensus       206 V~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~  282 (368)
                      |+|.||.+.++.+||++++...+... ..+++...   ..+.|.|||-|.+.++|..|+..+++.-+   +|+++..
T Consensus         2 v~i~~l~~~~~~~~l~~~~~~~g~v~-~~~~~~~~---~~~~~~~~v~f~~~~~a~~a~~~~~~~~~---~~~~i~v   71 (72)
T smart00362        2 LFVGNLPPDVTEEDLKELFSKFGPIE-SVKIPKDT---GKSKGFAFVEFESEEDAEKAIEALNGTKL---GGRPLRV   71 (72)
T ss_pred             EEEcCCCCcCCHHHHHHHHHhcCCEE-EEEEecCC---CCCCceEEEEeCCHHHHHHHHHHhCCcEE---CCEEEee
Confidence            79999999999999999998766443 34444333   56789999999999999999999998655   8888763

>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability

Probab=98.36  E-value=2.4e-06  Score=59.09  Aligned_cols=73  Identities=26%  Similarity=0.271  Sum_probs=58.9

Q ss_pred             EEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeec
Q 017670          205 LVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS  283 (368)
Q Consensus       205 lV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S  283 (368)
                      .|+|.||.+..+.+||.+++...+ .-+...|......  .+.|.|+|-|.+.++|..|+..++..-+   +|+++..+
T Consensus         1 ~i~i~~l~~~~~~~~i~~~~~~~g-~i~~~~~~~~~~~--~~~~~~~v~f~s~~~a~~a~~~~~~~~~---~~~~~~v~   73 (74)
T cd00590           1 TLFVGNLPPDVTEEDLRELFSKFG-KVESVRIVRDKDT--KSKGFAFVEFEDEEDAEKALEALNGKEL---GGRPLRVE   73 (74)
T ss_pred             CEEEeCCCCccCHHHHHHHHHhcC-CEEEEEEeeCCCC--CcceEEEEEECCHHHHHHHHHHhCCCeE---CCeEEEEe
Confidence            379999999999999999998864 3455555543332  5689999999999999999999999876   88888643

This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=98.36  E-value=1.5e-06  Score=84.84  Aligned_cols=109  Identities=15%  Similarity=0.149  Sum_probs=80.5

Q ss_pred             HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      ...+|.|||.||.+.+|.+||+++|...+. -..++++. ...+..+-|.|||-|.+.++|+.||..||...|   .|||
T Consensus       104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~-V~~v~i~~-d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l---~gr~  178 (346)
T TIGR01659       104 NNSGTNLIVNYLPQDMTDRELYALFRTIGP-INTCRIMR-DYKTGYSFGYAFVDFGSEADSQRAIKNLNGITV---RNKR  178 (346)
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEEe-cCCCCccCcEEEEEEccHHHHHHHHHHcCCCcc---CCce
Confidence            346899999999999999999999998765 45555543 223456779999999999999999999999877   8999


Q ss_pred             eeeccCCCCCC--CCCCccccceehhhHHHHHHHHHHhhh
Q 017670          280 LLGSIGTPCFT--GKQSKFVGHLALDKLKFQMQREMREAV  317 (368)
Q Consensus       280 L~~S~g~~~~p--~k~s~f~GHl~i~k~r~q~qrEmr~AV  317 (368)
                      |..+...+...  ....-|+|.|.-+-    ..+++++..
T Consensus       179 i~V~~a~p~~~~~~~~~lfV~nLp~~v----tee~L~~~F  214 (346)
T TIGR01659       179 LKVSYARPGGESIKDTNLYVTNLPRTI----TDDQLDTIF  214 (346)
T ss_pred             eeeecccccccccccceeEEeCCCCcc----cHHHHHHHH
Confidence            99876654322  22335666665442    335566544

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=98.29  E-value=2e-06  Score=79.75  Aligned_cols=95  Identities=20%  Similarity=0.190  Sum_probs=72.0

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      .-+.|||.||.+.+|.+||+++|...+.. ..++++. ...+..+-|.|||-|.+.++|+.||..||...|   .||+|.
T Consensus         2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i-~~v~i~~-d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l---~g~~i~   76 (352)
T TIGR01661         2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEI-ESCKLVR-DKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRL---QNKTIK   76 (352)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHccCCE-EEEEEEE-cCCCCccceEEEEEECcHHHHHHHHhhcccEEE---CCeeEE
Confidence            45789999999999999999999997754 4444432 233467889999999999999999999999877   899998


Q ss_pred             eccCCCCCC--CCCCcccccee
Q 017670          282 GSIGTPCFT--GKQSKFVGHLA  301 (368)
Q Consensus       282 ~S~g~~~~p--~k~s~f~GHl~  301 (368)
                      -..+.+...  ....-|+|+|.
T Consensus        77 v~~a~~~~~~~~~~~l~v~~l~   98 (352)
T TIGR01661        77 VSYARPSSDSIKGANLYVSGLP   98 (352)
T ss_pred             EEeecccccccccceEEECCcc
Confidence            766654432  12334445443

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=98.25  E-value=2.7e-06  Score=85.13  Aligned_cols=81  Identities=27%  Similarity=0.347  Sum_probs=67.8

Q ss_pred             HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      ...++.|||.||++.+|.+||.++|..- +.-+.++++..  ......|.|||.|.+.++|..||..||...|   +|||
T Consensus       282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~-G~i~~~~i~~d--~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~---~gk~  355 (562)
T TIGR01628       282 KAQGVNLYVKNLDDTVTDEKLRELFSEC-GEITSAKVMLD--EKGVSRGFGFVCFSNPEEANRAVTEMHGRML---GGKP  355 (562)
T ss_pred             ccCCCEEEEeCCCCccCHHHHHHHHHhc-CCeEEEEEEEC--CCCCcCCeEEEEeCCHHHHHHHHHHhcCCee---CCce
Confidence            3468899999999999999999999874 45566666654  3457789999999999999999999999766   9999


Q ss_pred             eeeccCC
Q 017670          280 LLGSIGT  286 (368)
Q Consensus       280 L~~S~g~  286 (368)
                      |+...+.
T Consensus       356 l~V~~a~  362 (562)
T TIGR01628       356 LYVALAQ  362 (562)
T ss_pred             eEEEecc
Confidence            9876654

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>smart00360 RRM RNA recognition motif

Probab=98.23  E-value=4.4e-06  Score=57.10  Aligned_cols=70  Identities=29%  Similarity=0.316  Sum_probs=54.4

Q ss_pred             EecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670          208 LENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG  282 (368)
Q Consensus       208 LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~  282 (368)
                      |.||++.++.+||.++|...+... ..++++ ......+.|.|||.|.+.++|..|+..|+..-+   +|++|..
T Consensus         1 i~~l~~~~~~~~l~~~f~~~g~v~-~~~i~~-~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~---~~~~~~v   70 (71)
T smart00360        1 VGNLPPDVTEEELRELFSKFGKIE-SVRLVR-DKDTGKSKGFAFVEFESEEDAEKALEALNGKEL---DGRPLKV   70 (71)
T ss_pred             CCCCCcccCHHHHHHHHHhhCCEe-EEEEEe-CCCCCCCCceEEEEeCCHHHHHHHHHHcCCCee---CCcEEEe
Confidence            579999999999999998766442 233333 223457789999999999999999999996655   8888753

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=98.22  E-value=4.5e-06  Score=77.43  Aligned_cols=82  Identities=23%  Similarity=0.176  Sum_probs=67.5

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ..|..|+|.||.+..+.++|.++|...+. --.++++. ...+...-|.|||-|.+.++|..||..||+..|   +||+|
T Consensus       267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~-v~~v~i~~-d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~---~gr~i  341 (352)
T TIGR01661       267 GAGYCIFVYNLSPDTDETVLWQLFGPFGA-VQNVKIIR-DLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTL---GNRVL  341 (352)
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhCCC-eEEEEEeE-cCCCCCccceEEEEECCHHHHHHHHHHhCCCEE---CCeEE
Confidence            44668999999999999999999987554 44466543 344567889999999999999999999999888   99999


Q ss_pred             eeccCCC
Q 017670          281 LGSIGTP  287 (368)
Q Consensus       281 ~~S~g~~  287 (368)
                      .-++.+.
T Consensus       342 ~V~~~~~  348 (352)
T TIGR01661       342 QVSFKTN  348 (352)
T ss_pred             EEEEccC
Confidence            8776654

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>PF14259 RRM_6: RNA recognition motif (a

Probab=98.16  E-value=2.5e-06  Score=62.27  Aligned_cols=69  Identities=25%  Similarity=0.275  Sum_probs=52.8

Q ss_pred             EEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          206 VVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       206 V~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      |||.||.++.|.+||.+++...+.- -..+|+....  ....|.|||-|.+.+.|..|+..++.-.+   +||.|
T Consensus         1 v~i~nlp~~~~~~~l~~~f~~~g~v-~~v~~~~~~~--~~~~~~a~v~f~~~~~a~~al~~~~~~~~---~g~~l   69 (70)
T PF14259_consen    1 VYISNLPPSTTEEDLRNFFSRFGPV-EKVRLIKNKD--GQSRGFAFVEFSSEEDAKRALELLNGKEI---DGRKL   69 (70)
T ss_dssp             EEEESSTTT--HHHHHHHCTTSSBE-EEEEEEESTT--SSEEEEEEEEESSHHHHHHHHHHHTTEEE---TTEEE
T ss_pred             CEEeCCCCCCCHHHHHHHHHhcCCc-ceEEEEeeec--cccCCEEEEEeCCHHHHHHHHHHCCCcEE---CCEEc
Confidence            7999999999999999998876532 2334443222  45689999999999999999999986666   89876

k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=98.11  E-value=8.4e-06  Score=79.66  Aligned_cols=82  Identities=16%  Similarity=0.142  Sum_probs=63.1

Q ss_pred             HHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceec-----ccCCcccCCCCCceEEEEEechHHHHHHHHhhcccee
Q 017670          198 VAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAK-----MIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL  272 (368)
Q Consensus       198 ~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~Ak-----mI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL  272 (368)
                      .+..+.+.|||.||.+.+|.+||.++|.+.|.......     .|..+.+ ...-|.|||.|.+.+.|..|| .||+..|
T Consensus       170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-~~~kg~afVeF~~~e~A~~Al-~l~g~~~  247 (509)
T TIGR01642       170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-NKEKNFAFLEFRTVEEATFAM-ALDSIIY  247 (509)
T ss_pred             cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-CCCCCEEEEEeCCHHHHhhhh-cCCCeEe
Confidence            45667789999999999999999999999766544322     2222222 356789999999999999999 5888655


Q ss_pred             eecCCceeeecc
Q 017670          273 LLSNGRPLLGSI  284 (368)
Q Consensus       273 ~ls~GRPL~~S~  284 (368)
                         +|+||.-..
T Consensus       248 ---~g~~l~v~r  256 (509)
T TIGR01642       248 ---SNVFLKIRR  256 (509)
T ss_pred             ---eCceeEecC
Confidence               899987643

Members of this subfamily are found in plants, metazoa and fungi.

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=98.10  E-value=9e-06  Score=79.44  Aligned_cols=82  Identities=18%  Similarity=0.201  Sum_probs=61.7

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      ..|.|||.||++.+|.+||+++|...+.. ..++++ +...+..+-|.|||-|.++++|+.||..||+..|.- .++||.
T Consensus       192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V-~~v~i~-~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g-~~~~l~  268 (346)
T TIGR01659       192 KDTNLYVTNLPRTITDDQLDTIFGKYGQI-VQKNIL-RDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEG-GSQPLT  268 (346)
T ss_pred             ccceeEEeCCCCcccHHHHHHHHHhcCCE-EEEEEe-ecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCC-CceeEE
Confidence            35789999999999999999999876643 344443 333344556899999999999999999999987611 236887


Q ss_pred             eccCC
Q 017670          282 GSIGT  286 (368)
Q Consensus       282 ~S~g~  286 (368)
                      ...+.
T Consensus       269 V~~a~  273 (346)
T TIGR01659       269 VRLAE  273 (346)
T ss_pred             EEECC
Confidence            65443

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>PLN03120 nucleic acid binding protein; Provisional

Probab=98.03  E-value=1.6e-05  Score=76.39  Aligned_cols=76  Identities=13%  Similarity=0.055  Sum_probs=62.5

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      .++.||+.||++..|..||+|+|...+. -....|+    .+..+.|.|||.|.+.++|+.|| .||+.-|   +||+|.
T Consensus         3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~-I~~V~I~----~d~~~~GfAFVtF~d~eaAe~Al-lLnG~~l---~gr~V~   73 (260)
T PLN03120          3 QVRTVKVSNVSLKATERDIKEFFSFSGD-IEYVEMQ----SENERSQIAYVTFKDPQGAETAL-LLSGATI---VDQSVT   73 (260)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEe----ecCCCCCEEEEEeCcHHHHHHHH-HhcCCee---CCceEE
Confidence            3689999999999999999999988764 4445443    23346799999999999999999 4988877   899998


Q ss_pred             eccCC
Q 017670          282 GSIGT  286 (368)
Q Consensus       282 ~S~g~  286 (368)
                      -+...
T Consensus        74 Vt~a~   78 (260)
T PLN03120         74 ITPAE   78 (260)
T ss_pred             EEecc
Confidence            77764

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=98.00  E-value=1.8e-05  Score=77.33  Aligned_cols=82  Identities=12%  Similarity=0.080  Sum_probs=66.3

Q ss_pred             HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      .+.++.|||.||.+.+|.++|.+||...+.. ..++++ ....+..+.|.|||.|.+.++|+.||..||+..|   +|++
T Consensus       292 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i-~~~~~~-~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~---~~~~  366 (509)
T TIGR01642       292 LDSKDRIYIGNLPLYLGEDQIKELLESFGDL-KAFNLI-KDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDT---GDNK  366 (509)
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-eEEEEE-ecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE---CCeE
Confidence            4567899999999999999999999886543 333333 2233467889999999999999999999999988   9999


Q ss_pred             eeeccCC
Q 017670          280 LLGSIGT  286 (368)
Q Consensus       280 L~~S~g~  286 (368)
                      |......
T Consensus       367 l~v~~a~  373 (509)
T TIGR01642       367 LHVQRAC  373 (509)
T ss_pred             EEEEECc
Confidence            9876653

Members of this subfamily are found in plants, metazoa and fungi.

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=98.00  E-value=1.5e-05  Score=77.14  Aligned_cols=79  Identities=16%  Similarity=0.088  Sum_probs=64.0

Q ss_pred             ccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670          203 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG  282 (368)
Q Consensus       203 GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~  282 (368)
                      .+.|||.||.+.+|.+||.++|...+.. ...++ .+......+.|.|||.|.+.++|..||..||+..|   +||||..
T Consensus       186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i-~~v~~-~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i---~g~~i~v  260 (457)
T TIGR01622       186 FLKLYVGNLHFNITEQELRQIFEPFGDI-EDVQL-HRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFEL---AGRPIKV  260 (457)
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCCe-EEEEE-EEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEE---CCEEEEE
Confidence            4789999999999999999999876543 23332 23334446779999999999999999999999666   8999998


Q ss_pred             ccCC
Q 017670          283 SIGT  286 (368)
Q Consensus       283 S~g~  286 (368)
                      +.+.
T Consensus       261 ~~a~  264 (457)
T TIGR01622       261 GYAQ  264 (457)
T ss_pred             EEcc
Confidence            8865

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=97.98  E-value=1.5e-05  Score=79.84  Aligned_cols=74  Identities=22%  Similarity=0.233  Sum_probs=60.8

Q ss_pred             EEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeec
Q 017670          205 LVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS  283 (368)
Q Consensus       205 lV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S  283 (368)
                      -|||.||++.+|.+||.++|...+... .++ |.+...+....|.|||.|.+.++|..||..+|...|   +|||+.-.
T Consensus         2 sl~VgnLp~~vte~~L~~~F~~~G~v~-~v~-v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i---~gk~i~i~   75 (562)
T TIGR01628         2 SLYVGDLDPDVTEAKLYDLFKPFGPVL-SVR-VCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRL---GGKPIRIM   75 (562)
T ss_pred             eEEEeCCCCCCCHHHHHHHHHhcCCEE-EEE-EEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---CCeeEEee
Confidence            589999999999999999999987532 222 333344457789999999999999999999999988   89997753

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=97.93  E-value=2.7e-05  Score=75.34  Aligned_cols=79  Identities=16%  Similarity=0.104  Sum_probs=64.0

Q ss_pred             HHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCC
Q 017670          198 VAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG  277 (368)
Q Consensus       198 ~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G  277 (368)
                      .+....+.|||.||.+.+|..||.++|...+ .--.+++|- ...+..+-|.|||-|.+.+.|..||. |++..|   .|
T Consensus        84 ~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G-~v~~v~i~~-d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~---~g  157 (457)
T TIGR01622        84 EAERDDRTVFVLQLALKARERDLYEFFSKVG-KVRDVQCIK-DRNSRRSKGVAYVEFYDVESVIKALA-LTGQML---LG  157 (457)
T ss_pred             ccccCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEee-cCCCCCcceEEEEEECCHHHHHHHHH-hCCCEE---CC
Confidence            3456678999999999999999999999977 334454543 33446778999999999999999996 888776   89


Q ss_pred             ceeee
Q 017670          278 RPLLG  282 (368)
Q Consensus       278 RPL~~  282 (368)
                      +||..
T Consensus       158 ~~i~v  162 (457)
T TIGR01622       158 RPIIV  162 (457)
T ss_pred             eeeEE
Confidence            99874

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=97.91  E-value=2.7e-05  Score=81.34  Aligned_cols=78  Identities=21%  Similarity=0.197  Sum_probs=64.4

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHh-hccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAF-KENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~-ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      ...+.|||.||++++|.++|+++|...- .+-..++++         .|.|||.|.++++|+.||..||...|   +||+
T Consensus       231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~---------rgfAFVeF~s~e~A~kAi~~lnG~~i---~Gr~  298 (578)
T TIGR01648       231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI---------RDYAFVHFEDREDAVKAMDELNGKEL---EGSE  298 (578)
T ss_pred             ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee---------cCeEEEEeCCHHHHHHHHHHhCCCEE---CCEE
Confidence            4568899999999999999999998750 333344332         46899999999999999999999988   9999


Q ss_pred             eeeccCCCCCC
Q 017670          280 LLGSIGTPCFT  290 (368)
Q Consensus       280 L~~S~g~~~~p  290 (368)
                      |..+.+.|...
T Consensus       299 I~V~~Akp~~~  309 (578)
T TIGR01648       299 IEVTLAKPVDK  309 (578)
T ss_pred             EEEEEccCCCc
Confidence            99998877543

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]

Probab=97.88  E-value=6e-05  Score=62.27  Aligned_cols=80  Identities=24%  Similarity=0.229  Sum_probs=66.5

Q ss_pred             ccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670          203 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG  282 (368)
Q Consensus       203 GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~  282 (368)
                      ...|||.||.+.+|.+||.++|.+.+.-.-.-  |..........|.|||.|.+.+.|..|+..+++.-|   .||+|.-
T Consensus       115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~--~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~---~~~~~~v  189 (306)
T COG0724         115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVR--LVRDRETGKSRGFAFVEFESEESAEKAIEELNGKEL---EGRPLRV  189 (306)
T ss_pred             CceEEEeCCCCCCCHHHHHHHHHhcCceeEEE--eeeccccCccCceEEEEecCHHHHHHHHHHcCCCeE---CCceeEe
Confidence            68999999999999999999999988762222  222224468899999999999999999999998888   9999997


Q ss_pred             ccCCC
Q 017670          283 SIGTP  287 (368)
Q Consensus       283 S~g~~  287 (368)
                      ....+
T Consensus       190 ~~~~~  194 (306)
T COG0724         190 QKAQP  194 (306)
T ss_pred             ecccc
Confidence            77654

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=97.86  E-value=5.2e-05  Score=79.31  Aligned_cols=107  Identities=21%  Similarity=0.208  Sum_probs=79.4

Q ss_pred             HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      -+.|+.|+|.||.+.++.+||.++|...+. -..++++-.  ++..+-|.|||.|.+.++|+.||..||+..|  .+||.
T Consensus        55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~-I~~vrl~~D--~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i--~~Gr~  129 (578)
T TIGR01648        55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGP-IYELRLMMD--FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEI--RPGRL  129 (578)
T ss_pred             CCCCCEEEeCCCCCCCCHHHHHHHHHhhCC-EEEEEEEEC--CCCCccceEEEEeCCHHHHHHHHHHcCCCee--cCCcc
Confidence            457899999999999999999999998764 445555544  6788999999999999999999999998866  46887


Q ss_pred             eeeccCCCCCCCCCCccccceehhhHHHHHHHHHHh
Q 017670          280 LLGSIGTPCFTGKQSKFVGHLALDKLKFQMQREMRE  315 (368)
Q Consensus       280 L~~S~g~~~~p~k~s~f~GHl~i~k~r~q~qrEmr~  315 (368)
                      |......    ..+.-|+|-|.-+.-+-+..+++.+
T Consensus       130 l~V~~S~----~~~rLFVgNLP~~~TeeeL~eeFsk  161 (578)
T TIGR01648       130 LGVCISV----DNCRLFVGGIPKNKKREEILEEFSK  161 (578)
T ss_pred             ccccccc----cCceeEeecCCcchhhHHHHHHhhc
Confidence            6433221    2355677766555433344455554

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=97.81  E-value=5e-05  Score=75.89  Aligned_cols=76  Identities=16%  Similarity=0.149  Sum_probs=63.6

Q ss_pred             HhcccEEEEecCCC-CCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCc
Q 017670          200 HEHGTLVVLENLDP-SYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR  278 (368)
Q Consensus       200 ~E~GtlV~LqNLDp-s~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GR  278 (368)
                      ...+++|||.||++ .+|.++|.+||..-+... .++++..      ..|.|||-|.+.++|+.||..||+..|   +||
T Consensus       272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~-~vki~~~------~~g~afV~f~~~~~A~~Ai~~lng~~l---~g~  341 (481)
T TIGR01649       272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVE-RVKFMKN------KKETALIEMADPYQAQLALTHLNGVKL---FGK  341 (481)
T ss_pred             CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeE-EEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEE---CCc
Confidence            34789999999998 699999999999866544 4444432      249999999999999999999999988   999


Q ss_pred             eeeeccC
Q 017670          279 PLLGSIG  285 (368)
Q Consensus       279 PL~~S~g  285 (368)
                      +|..+..
T Consensus       342 ~l~v~~s  348 (481)
T TIGR01649       342 PLRVCPS  348 (481)
T ss_pred             eEEEEEc
Confidence            9988765

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=97.77  E-value=5.2e-05  Score=79.87  Aligned_cols=81  Identities=16%  Similarity=0.095  Sum_probs=65.9

Q ss_pred             HHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCC
Q 017670          198 VAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG  277 (368)
Q Consensus       198 ~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G  277 (368)
                      .|+...+.|||.||.+..|.++|+++|...+... ..+| ........+-|.|||-|.+.++|+.||..||+..|   +|
T Consensus       102 ~a~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~-sV~I-~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i---~G  176 (612)
T TIGR01645       102 QALAIMCRVYVGSISFELREDTIRRAFDPFGPIK-SINM-SWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQML---GG  176 (612)
T ss_pred             hhhcCCCEEEEcCCCCCCCHHHHHHHHHccCCEE-EEEE-eecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEE---ec
Confidence            4566778999999999999999999999865443 3333 33445567899999999999999999999998766   99


Q ss_pred             ceeeec
Q 017670          278 RPLLGS  283 (368)
Q Consensus       278 RPL~~S  283 (368)
                      |+|.-.
T Consensus       177 R~IkV~  182 (612)
T TIGR01645       177 RNIKVG  182 (612)
T ss_pred             ceeeec
Confidence            998654

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=97.69  E-value=9.9e-05  Score=77.83  Aligned_cols=83  Identities=11%  Similarity=0.118  Sum_probs=69.6

Q ss_pred             HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      ....+.||+.||++.++.+||.++|.. |+.-..++++.... ...+-|.|||.|.+.++|..||..||.--|   +||+
T Consensus       201 ~~~~~rLfVgnLp~~vteedLk~lFs~-FG~I~svrl~~D~~-tgksKGfGFVeFe~~e~A~kAI~amNg~el---gGr~  275 (612)
T TIGR01645       201 AKKFNRIYVASVHPDLSETDIKSVFEA-FGEIVKCQLARAPT-GRGHKGYGFIEYNNLQSQSEAIASMNLFDL---GGQY  275 (612)
T ss_pred             ccccceEEeecCCCCCCHHHHHHHHhh-cCCeeEEEEEecCC-CCCcCCeEEEEECCHHHHHHHHHHhCCCee---CCeE
Confidence            345678999999999999999999985 66777777664433 367889999999999999999999998877   9999


Q ss_pred             eeeccCCC
Q 017670          280 LLGSIGTP  287 (368)
Q Consensus       280 L~~S~g~~  287 (368)
                      |--.+...
T Consensus       276 LrV~kAi~  283 (612)
T TIGR01645       276 LRVGKCVT  283 (612)
T ss_pred             EEEEecCC
Confidence            98776653

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]

Probab=97.66  E-value=0.00015  Score=65.15  Aligned_cols=97  Identities=21%  Similarity=0.142  Sum_probs=78.4

Q ss_pred             CCccccccccCCChHHHHHHHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechH
Q 017670          179 PSLDRSKWFKELPWEERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTRE  258 (368)
Q Consensus       179 P~~d~skWfK~lPWEe~lr~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~tre  258 (368)
                      +++=+-+.|++  =.+.--.|..+.+.||+.||-...|.+.|=|||..++..+...  .-..-|...++|-|||+|-+++
T Consensus        14 ~s~Yr~~~f~g--t~~e~~~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irrii--MGLdr~kktpCGFCFVeyy~~~   89 (153)
T KOG0121|consen   14 LSAYRDRRFRG--TDEEQLEALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRII--MGLDRFKKTPCGFCFVEYYSRD   89 (153)
T ss_pred             hhHHHHHHhcC--chHHHHHHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeE--eccccCCcCccceEEEEEecch
Confidence            44445566764  2334445778889999999999999999999999988877654  2334566799999999999999


Q ss_pred             HHHHHHHhhccceeeecCCceeee
Q 017670          259 VAELVVTKLEEGCLLLSNGRPLLG  282 (368)
Q Consensus       259 aAdsAi~Kln~~cL~ls~GRPL~~  282 (368)
                      +|+.||+-||..-|   |.||+-.
T Consensus        90 dA~~AlryisgtrL---ddr~ir~  110 (153)
T KOG0121|consen   90 DAEDALRYISGTRL---DDRPIRI  110 (153)
T ss_pred             hHHHHHHHhccCcc---cccceee
Confidence            99999999999999   9999874

>PLN03121 nucleic acid binding protein; Provisional

Probab=97.61  E-value=0.00017  Score=69.03  Aligned_cols=76  Identities=21%  Similarity=0.171  Sum_probs=61.4

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ..|..|++.||.|..|..||+|+|...|+. -..+||..    ....|-|||.|...++|+.|| .||+.-|   .|+|+
T Consensus         3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I-~~V~I~~D----~et~gfAfVtF~d~~aaetAl-lLnGa~l---~d~~I   73 (243)
T PLN03121          3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAI-EHVEIIRS----GEYACTAYVTFKDAYALETAV-LLSGATI---VDQRV   73 (243)
T ss_pred             CCceEEEEecCCCCCCHHHHHHHHHhcCCe-EEEEEecC----CCcceEEEEEECCHHHHHHHH-hcCCCee---CCceE
Confidence            368999999999999999999999997663 23334433    445589999999999999999 7888877   78887


Q ss_pred             eeccC
Q 017670          281 LGSIG  285 (368)
Q Consensus       281 ~~S~g  285 (368)
                      .-+..
T Consensus        74 ~It~~   78 (243)
T PLN03121         74 CITRW   78 (243)
T ss_pred             EEEeC
Confidence            76554

>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]

Probab=97.51  E-value=0.00016  Score=67.58  Aligned_cols=97  Identities=23%  Similarity=0.277  Sum_probs=75.1

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      .++..||+.|||+-++.+-+=|||-||+-  +---.||+.-+.+-|-|.|||-|.+.++||=||+=||-+-|   .|||+
T Consensus         7 nqd~tiyvgnld~kvs~~~l~EL~iqagp--Vv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkL---YgrpI   81 (203)
T KOG0131|consen    7 NQDATLYVGNLDEKVSEELLYELFIQAGP--VVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKL---YGRPI   81 (203)
T ss_pred             CCCceEEEecCCHHHHHHHHHHHHHhcCc--eeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHh---cCcee
Confidence            47789999999999987766666666653  23346899999889999999999999999999999997777   99999


Q ss_pred             eeccCC---CCCCCCCCccccceeh
Q 017670          281 LGSIGT---PCFTGKQSKFVGHLAL  302 (368)
Q Consensus       281 ~~S~g~---~~~p~k~s~f~GHl~i  302 (368)
                      .-++..   -..+..-.-|+|-|.-
T Consensus        82 rv~kas~~~~nl~vganlfvgNLd~  106 (203)
T KOG0131|consen   82 RVNKASAHQKNLDVGANLFVGNLDP  106 (203)
T ss_pred             EEEecccccccccccccccccccCc
Confidence            877776   2222223445665543

>smart00361 RRM_1 RNA recognition motif

Probab=97.50  E-value=0.00031  Score=52.96  Aligned_cols=63  Identities=19%  Similarity=0.265  Sum_probs=45.4

Q ss_pred             hHHHHHHHH---Hhhccceec--ccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeec
Q 017670          218 TVVEDLVWH---AFKENCSAK--MIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS  283 (368)
Q Consensus       218 ~dVedLi~~---a~ke~c~Ak--mI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S  283 (368)
                      +||+++|.+   .|+.-..+.  ++++.......-|.|||-|.+.++|..|+..||+.-+   +||+|.++
T Consensus         3 ~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~---~gr~l~~~   70 (70)
T smart00361        3 EDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYF---DGRTVKAE   70 (70)
T ss_pred             hhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEE---CCEEEEeC
Confidence            566777762   222222232  4455443355679999999999999999999999988   99999875

>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=97.43  E-value=0.00035  Score=61.01  Aligned_cols=74  Identities=22%  Similarity=0.185  Sum_probs=58.2

Q ss_pred             HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      -|..+++||.||-...|++|+=|||-.-+-..    -| ++--..---|.|||+|-.-.+|..|+.+|+.--+   +||+
T Consensus        15 pevnriLyirNLp~~ITseemydlFGkyg~Ir----QI-RiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~---~~ry   86 (124)
T KOG0114|consen   15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIR----QI-RIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNV---DNRY   86 (124)
T ss_pred             hhhheeEEEecCCccccHHHHHHHhhcccceE----EE-EecCccCcCceEEEEehHhhhHHHHHHHhccccc---CCce
Confidence            46789999999999999999999987633221    00 0112224469999999999999999999998776   9999


Q ss_pred             ee
Q 017670          280 LL  281 (368)
Q Consensus       280 L~  281 (368)
                      |+
T Consensus        87 l~   88 (124)
T KOG0114|consen   87 LV   88 (124)
T ss_pred             EE
Confidence            98

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=97.42  E-value=0.0004  Score=69.55  Aligned_cols=73  Identities=15%  Similarity=0.083  Sum_probs=59.3

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhh-ccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFK-ENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~k-e~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      .-++.|+|.||.+++|.++|++||.+.+. .-+..|+.+..   +-..|.|||-|.+.++|..||..||+.-|   +||.
T Consensus       392 ~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~---~~~~~~gfVeF~~~e~A~~Al~~ln~~~l---~~~~  465 (481)
T TIGR01649       392 PPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD---NERSKMGLLEWESVEDAVEALIALNHHQL---NEPN  465 (481)
T ss_pred             CCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCC---CCcceeEEEEcCCHHHHHHHHHHhcCCcc---CCCC
Confidence            34678999999999999999999999765 34455665432   22478999999999999999999998877   7764

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=97.18  E-value=0.001  Score=71.27  Aligned_cols=125  Identities=20%  Similarity=0.188  Sum_probs=95.7

Q ss_pred             ccEEEEecCCCCCCchHHHHHHHHHhhc-cceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          203 GTLVVLENLDPSYTSTVVEDLVWHAFKE-NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       203 GtlV~LqNLDps~ts~dVedLi~~a~ke-~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      -|.+|++||...=|..+++++|...+.. .|+-.+-+...---+..|-+||-|.+.+.|..|++.|+...|   ||++|.
T Consensus       515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvl---dGH~l~  591 (725)
T KOG0110|consen  515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVL---DGHKLE  591 (725)
T ss_pred             chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCcee---cCceEE
Confidence            3449999999999999999999995443 222211121111124569999999999999999999998877   999999


Q ss_pred             eccCC--------CCCCCCCCccccceehhhHHHHHH-HHHHhhhccc----cCCCCCcchhhc
Q 017670          282 GSIGT--------PCFTGKQSKFVGHLALDKLKFQMQ-REMREAVSTS----HCSQPNSLEYDM  332 (368)
Q Consensus       282 ~S~g~--------~~~p~k~s~f~GHl~i~k~r~q~q-rEmr~AVSTS----HCSQPNtiEYdm  332 (368)
                      +++-.        ...|.+..  .+-|-+-|+..|++ ||.|+--++.    -|.=|+-|-|.|
T Consensus       592 lk~S~~k~~~~~gK~~~~kk~--~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a  653 (725)
T KOG0110|consen  592 LKISENKPASTVGKKKSKKKK--GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGA  653 (725)
T ss_pred             EEeccCccccccccccccccc--cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchh
Confidence            88765        33333332  56778889999888 9999999888    588999988888

>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]

Probab=97.12  E-value=0.00058  Score=63.59  Aligned_cols=75  Identities=28%  Similarity=0.162  Sum_probs=59.4

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhcccee-------ee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL-------LL  274 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL-------~l  274 (368)
                      .+|.||+.||....|.-|||.+|...+.+.-       +-+.-.+.|-|||.|...-+|+-|++-||..-|       =|
T Consensus         9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrs-------vWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~   81 (195)
T KOG0107|consen    9 GNTKVYVGNLGSRATKRELERAFSKYGPLRS-------VWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVEL   81 (195)
T ss_pred             CCceEEeccCCCCcchHHHHHHHHhcCccee-------EEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEe
Confidence            4799999999999999999999998775433       333346779999999999999999999987543       34


Q ss_pred             cCCceeeec
Q 017670          275 SNGRPLLGS  283 (368)
Q Consensus       275 s~GRPL~~S  283 (368)
                      |.|+|==+-
T Consensus        82 S~G~~r~~r   90 (195)
T KOG0107|consen   82 STGRPRGSR   90 (195)
T ss_pred             ecCCccccc
Confidence            556665333

>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]

Probab=96.97  E-value=0.0016  Score=64.77  Aligned_cols=71  Identities=25%  Similarity=0.279  Sum_probs=58.1

Q ss_pred             EEEecCCCCCCchHHHHHHHHHhhc-cceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeecc
Q 017670          206 VVLENLDPSYTSTVVEDLVWHAFKE-NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSI  284 (368)
Q Consensus       206 V~LqNLDps~ts~dVedLi~~a~ke-~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S~  284 (368)
                      |+|.||||+.+..++-|+|...++- .|-...=..     ---|. ||-|-+-++|..||..||+.+|   +|.+++...
T Consensus        79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-----g~kg~-FV~f~~e~~a~~ai~~~ng~ll---~~kki~vg~  149 (369)
T KOG0123|consen   79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-----GSKGY-FVQFESEESAKKAIEKLNGMLL---NGKKIYVGL  149 (369)
T ss_pred             eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-----Cceee-EEEeCCHHHHHHHHHHhcCccc---CCCeeEEee
Confidence            9999999999999999999987764 444321111     24567 9999999999999999999988   999999754


Q ss_pred             C
Q 017670          285 G  285 (368)
Q Consensus       285 g  285 (368)
                      .
T Consensus       150 ~  150 (369)
T KOG0123|consen  150 F  150 (369)
T ss_pred             c
Confidence            4

>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]

Probab=96.96  E-value=0.0033  Score=65.07  Aligned_cols=107  Identities=20%  Similarity=0.210  Sum_probs=85.8

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ..|+=|+|.-+---+..+|+-.||-.+++.- +.| +=..+||.-|-|.|||.|.++++|..||+-||+-=+  ..||+|
T Consensus        81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~-elR-LMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Ei--r~GK~i  156 (506)
T KOG0117|consen   81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIY-ELR-LMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEI--RPGKLL  156 (506)
T ss_pred             CCCceEEecCCCccccchhhHHHHHhcccee-eEE-EeecccCCCCcceEEEEeecHHHHHHHHHHhhCccc--cCCCEe
Confidence            8999999999999999999999999887643 333 223678889999999999999999999999999966  788888


Q ss_pred             eeccCCCCCCCCCCccccceehhhHHHHHHHHHHh
Q 017670          281 LGSIGTPCFTGKQSKFVGHLALDKLKFQMQREMRE  315 (368)
Q Consensus       281 ~~S~g~~~~p~k~s~f~GHl~i~k~r~q~qrEmr~  315 (368)
                      -|+.    --.++.-|+|-+-=++.|..-.+||++
T Consensus       157 gvc~----Svan~RLFiG~IPK~k~keeIlee~~k  187 (506)
T KOG0117|consen  157 GVCV----SVANCRLFIGNIPKTKKKEEILEEMKK  187 (506)
T ss_pred             EEEE----eeecceeEeccCCccccHHHHHHHHHh
Confidence            6553    335688899987766655444455554

>PLN03213 repressor of silencing 3; Provisional

Probab=96.81  E-value=0.0041  Score=65.55  Aligned_cols=79  Identities=9%  Similarity=0.029  Sum_probs=64.3

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEech--HHHHHHHHhhccceeeecCCc
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTR--EVAELVVTKLEEGCLLLSNGR  278 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~tr--eaAdsAi~Kln~~cL~ls~GR  278 (368)
                      ..|..||+.||.+.+|.+||+.+|...|.-.. +.+| +.+.    -|-|||-|.+-  +.+..||..||+.-+   .||
T Consensus         8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkd-VEIp-RETG----RGFAFVEMssdddaEeeKAISaLNGAEW---KGR   78 (759)
T PLN03213          8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDA-VEFV-RTKG----RSFAYIDFSPSSTNSLTKLFSTYNGCVW---KGG   78 (759)
T ss_pred             CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeE-EEEe-cccC----CceEEEEecCCcHHHHHHHHHHhcCCee---cCc
Confidence            45789999999999999999999998766443 4444 4443    68999999987  679999999999988   899


Q ss_pred             eeeeccCCCC
Q 017670          279 PLLGSIGTPC  288 (368)
Q Consensus       279 PL~~S~g~~~  288 (368)
                      .|.--++.|.
T Consensus        79 ~LKVNKAKP~   88 (759)
T PLN03213         79 RLRLEKAKEH   88 (759)
T ss_pred             eeEEeeccHH
Confidence            9986666543

>PF13893 RRM_5: RNA recognition motif

Probab=96.74  E-value=0.0018  Score=46.23  Aligned_cols=34  Identities=38%  Similarity=0.483  Sum_probs=31.4

Q ss_pred             CceEEEEEechHHHHHHHHhhccceeeecCCceeeec
Q 017670          247 FGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS  283 (368)
Q Consensus       247 sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S  283 (368)
                      .|.|||-|.+.++|..|+..||+..+   +||||..+
T Consensus        21 ~~~a~V~f~~~~~A~~a~~~l~~~~~---~g~~l~V~   54 (56)
T PF13893_consen   21 RGFAFVEFASVEDAQKAIEQLNGRQF---NGRPLKVS   54 (56)
T ss_dssp             TTEEEEEESSHHHHHHHHHHHTTSEE---TTEEEEEE
T ss_pred             CCEEEEEECCHHHHHHHHHHhCCCEE---CCcEEEEE
Confidence            59999999999999999999999987   99999754

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]

Probab=96.71  E-value=0.005  Score=59.07  Aligned_cols=86  Identities=22%  Similarity=0.270  Sum_probs=73.3

Q ss_pred             HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      ++.=|-|.+-||.+.-|.+|+.-+|..-+.-.  --.||+..|..-.-|-|||-|.-+.+|+-||..|+...|   |||-
T Consensus        10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vg--DVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~l---dgRe   84 (256)
T KOG4207|consen   10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVG--DVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVL---DGRE   84 (256)
T ss_pred             cccceeEEecceeccCCHHHHHHHHHHhCccc--ceecccccccccccceeEEEeeecchHHHHHHhhcceee---ccce
Confidence            45557899999999999999999987765432  236999999999999999999999999999999999977   9999


Q ss_pred             e---eeccCCCCCC
Q 017670          280 L---LGSIGTPCFT  290 (368)
Q Consensus       280 L---~~S~g~~~~p  290 (368)
                      |   +|--|-+.++
T Consensus        85 lrVq~arygr~~d~   98 (256)
T KOG4207|consen   85 LRVQMARYGRPSDL   98 (256)
T ss_pred             eeehhhhcCCCccc
Confidence            9   7777776554

>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]

Probab=96.58  E-value=0.004  Score=61.42  Aligned_cols=76  Identities=22%  Similarity=0.268  Sum_probs=59.6

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhc--------------------------------------------------
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKE--------------------------------------------------  230 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke--------------------------------------------------  230 (368)
                      ++-+.||+.|||+.+|.+=|.-||.+++--                                                  
T Consensus         4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~~v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF   83 (321)
T KOG0148|consen    4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDELKVNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAF   83 (321)
T ss_pred             CCCceEEeeccChhhHHHHHHHHHHhccccccceeehhhhccccccCcccCCCCccccceeEEehhcchhcchHHHHHHh
Confidence            456789999999999988888888876532                                                  


Q ss_pred             -----cceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          231 -----NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       231 -----~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                           --+||+|--.+. .-.-|++||-|..|++|+.||..||.--|   ++|-+
T Consensus        84 ~pFGevS~akvirD~~T-~KsKGYgFVSf~~k~dAEnAI~~MnGqWl---G~R~I  134 (321)
T KOG0148|consen   84 APFGEVSDAKVIRDMNT-GKSKGYGFVSFPNKEDAENAIQQMNGQWL---GRRTI  134 (321)
T ss_pred             ccccccccceEeecccC-CcccceeEEeccchHHHHHHHHHhCCeee---cccee
Confidence                 345565554444 34558999999999999999999999999   88764

>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=96.54  E-value=0.0034  Score=63.23  Aligned_cols=72  Identities=22%  Similarity=0.184  Sum_probs=60.7

Q ss_pred             HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      +..=+.|||.||-++++-.||.|-|.+-|...+.+        ..+.-|=|||-|+||++|+-|.-+.-+.++  .+|+-
T Consensus       225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~--------~~~~~~CAFv~ftTR~aAE~Aae~~~n~lv--I~G~R  294 (377)
T KOG0153|consen  225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIR--------ILPRKGCAFVTFTTREAAEKAAEKSFNKLV--INGFR  294 (377)
T ss_pred             ccceeEEEecccccchhHHHHHHHHhhcCCeeeEE--------eecccccceeeehhhHHHHHHHHhhcceee--ecceE
Confidence            34456899999999999999999999999998887        346778999999999999999999988533  47755


Q ss_pred             ee
Q 017670          280 LL  281 (368)
Q Consensus       280 L~  281 (368)
                      |.
T Consensus       295 l~  296 (377)
T KOG0153|consen  295 LK  296 (377)
T ss_pred             EE
Confidence            44

>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]

Probab=96.54  E-value=0.0042  Score=64.36  Aligned_cols=80  Identities=24%  Similarity=0.218  Sum_probs=69.5

Q ss_pred             HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      .++=-+|||.||-.+.|-+-|+.+|.+.++.-.-.|+  +        -.|||=|..|++|..||+.+|.-||   +|-|
T Consensus       256 ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~--r--------DYaFVHf~eR~davkAm~~~ngkel---dG~~  322 (506)
T KOG0117|consen  256 MSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP--R--------DYAFVHFAEREDAVKAMKETNGKEL---DGSP  322 (506)
T ss_pred             hhheeeeeeeccchhhhHHHHHHHHHhccceEEeecc--c--------ceeEEeecchHHHHHHHHHhcCcee---cCce
Confidence            4455689999999999999999999999877666644  1        2799999999999999999999999   9999


Q ss_pred             eeeccCCCCCCCC
Q 017670          280 LLGSIGTPCFTGK  292 (368)
Q Consensus       280 L~~S~g~~~~p~k  292 (368)
                      |=++-+.|.+-++
T Consensus       323 iEvtLAKP~~k~k  335 (506)
T KOG0117|consen  323 IEVTLAKPVDKKK  335 (506)
T ss_pred             EEEEecCChhhhc
Confidence            9999988876555

>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]

Probab=96.37  E-value=0.0073  Score=57.43  Aligned_cols=67  Identities=25%  Similarity=0.313  Sum_probs=55.4

Q ss_pred             EEEEecCCCCCCchHHHH----HHHHHhhccceecccCCcccCC-CCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          205 LVVLENLDPSYTSTVVED----LVWHAFKENCSAKMIPRVAFAS-PYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       205 lV~LqNLDps~ts~dVed----Li~~a~ke~c~AkmI~~~~ys~-p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      .+||.||.-..--+|+..    ||.+-++--|.      +++.. ...|+|||+|+.-++|-.|++.|++=-.   .|.|
T Consensus        11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI------~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpF---ygK~   81 (221)
T KOG4206|consen   11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDI------SAFKTPKMRGQAFVVFKETEAASAALRALQGFPF---YGKP   81 (221)
T ss_pred             eEeehhccccccHHHHHHHHHHHHHhhCCeEEE------EecCCCCccCceEEEecChhHHHHHHHHhcCCcc---cCch
Confidence            899999999999999997    66665555444      35533 7889999999999999999999988777   7888


Q ss_pred             e
Q 017670          280 L  280 (368)
Q Consensus       280 L  280 (368)
                      |
T Consensus        82 m   82 (221)
T KOG4206|consen   82 M   82 (221)
T ss_pred             h
Confidence            5

>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]

Probab=96.19  E-value=0.012  Score=58.16  Aligned_cols=91  Identities=19%  Similarity=0.208  Sum_probs=73.7

Q ss_pred             cCCChHHHHHHHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhh
Q 017670          188 KELPWEERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKL  267 (368)
Q Consensus       188 K~lPWEe~lr~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kl  267 (368)
                      +++-+||-.--+--.+|.||..|+-+++|.+++++.|..-+. .-+.|+.       +--|.|||-|-|+|+|..||-.+
T Consensus       149 ~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~-I~EVRvF-------k~qGYaFVrF~tkEaAahAIv~m  220 (321)
T KOG0148|consen  149 KPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGP-IQEVRVF-------KDQGYAFVRFETKEAAAHAIVQM  220 (321)
T ss_pred             CCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCc-ceEEEEe-------cccceEEEEecchhhHHHHHHHh
Confidence            347788888888888999999999999998888887765332 3344332       44688999999999999999999


Q ss_pred             ccceeeecCCceeeeccCCCCC
Q 017670          268 EEGCLLLSNGRPLLGSIGTPCF  289 (368)
Q Consensus       268 n~~cL~ls~GRPL~~S~g~~~~  289 (368)
                      |+.=+   +|-++-||-|.-..
T Consensus       221 Nntei---~G~~VkCsWGKe~~  239 (321)
T KOG0148|consen  221 NNTEI---GGQLVRCSWGKEGD  239 (321)
T ss_pred             cCcee---CceEEEEeccccCC
Confidence            99988   99999999985443

>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]

Probab=95.96  E-value=0.0073  Score=60.10  Aligned_cols=80  Identities=24%  Similarity=0.362  Sum_probs=66.2

Q ss_pred             HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      .-++.-||++|||..++.+.+.+++.. +++.|.++++-- + +++..|.+||.|.+-+.|..|+..+|+..+   .|+|
T Consensus       267 ~~~~~nl~vknld~~~~~e~L~~~f~~-~GeI~s~kv~~~-~-~g~skG~gfV~fs~~eeA~~A~~~~n~~~i---~~k~  340 (369)
T KOG0123|consen  267 SLQGANLYVKNLDETLSDEKLRKIFSS-FGEITSAKVMVD-E-NGKSKGFGFVEFSSPEEAKKAMTEMNGRLI---GGKP  340 (369)
T ss_pred             cccccccccccCccccchhHHHHHHhc-ccceeeEEEEec-c-CCCccceEEEEcCCHHHHHHHHHhhChhhh---cCCc
Confidence            567899999999999999999998876 445555655532 2 268999999999999999999999999988   9999


Q ss_pred             eeeccC
Q 017670          280 LLGSIG  285 (368)
Q Consensus       280 L~~S~g  285 (368)
                      ++-+.+
T Consensus       341 l~vav~  346 (369)
T KOG0123|consen  341 LYVAVA  346 (369)
T ss_pred             hhhhHH
Confidence            985444

>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]

Probab=95.70  E-value=0.013  Score=55.21  Aligned_cols=85  Identities=20%  Similarity=0.160  Sum_probs=69.5

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      .-+.|++.|+|+..|.++|+..|.--+..+.+  .|+...|...+-|.||+-|...+.+..|+. ||.+.|   .||++.
T Consensus       100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~--ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i---~~~~i~  173 (231)
T KOG4209|consen  100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRV--TVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEI---PGPAIE  173 (231)
T ss_pred             CCceEEEeccccccccchhhheeeccCCccce--eeeccccCCCcceeEEEecccHhhhHHHhh-cCCccc---ccccce
Confidence            45789999999999999988877543333222  478888877889999999999999999999 999999   999988


Q ss_pred             eccCCCCCCCC
Q 017670          282 GSIGTPCFTGK  292 (368)
Q Consensus       282 ~S~g~~~~p~k  292 (368)
                      -+-.-.-.|+.
T Consensus       174 vt~~r~~~pg~  184 (231)
T KOG4209|consen  174 VTLKRTNVPGM  184 (231)
T ss_pred             eeeeeeecCCc
Confidence            77765556665

>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]

Probab=95.67  E-value=0.019  Score=58.97  Aligned_cols=75  Identities=17%  Similarity=0.078  Sum_probs=61.8

Q ss_pred             cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeec
Q 017670          204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS  283 (368)
Q Consensus       204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S  283 (368)
                      ..|++.|+.+.++.++|.+||..++...-..-+.  ..-+....|.+|+-|+.-+.|..|++.||+.=+   +||+|-..
T Consensus        19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~--D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~---~gr~l~v~   93 (435)
T KOG0108|consen   19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVY--DRETGKPKGFGFCEFTDEETAERAIRNLNGAEF---NGRKLRVN   93 (435)
T ss_pred             cceEecCCCCcccHHHHHHHHhccCccceeeecc--cccCCCcCceeeEecCchhhHHHHHHhcCCccc---CCceEEee
Confidence            8899999999999999999999988765444111  112247788999999999999999999999988   99997644

>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]

Probab=95.65  E-value=0.018  Score=56.06  Aligned_cols=64  Identities=19%  Similarity=0.120  Sum_probs=50.2

Q ss_pred             cEEEEecCCCCCCchHHHHHHHHHhhc-cceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccc
Q 017670          204 TLVVLENLDPSYTSTVVEDLVWHAFKE-NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEG  270 (368)
Q Consensus       204 tlV~LqNLDps~ts~dVedLi~~a~ke-~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~  270 (368)
                      ..|.|.||--.-+..|++|||+-.+-. +|+. .+.  --....-|-|||-|.+|++|..||..||.-
T Consensus       190 ~tvRvtNLsed~~E~dL~eLf~~fg~i~rvyl-ard--K~TG~~kGFAFVtF~sRddA~rAI~~LnG~  254 (270)
T KOG0122|consen  190 ATVRVTNLSEDMREDDLEELFRPFGPITRVYL-ARD--KETGLSKGFAFVTFESRDDAARAIADLNGY  254 (270)
T ss_pred             ceeEEecCccccChhHHHHHhhccCccceeEE-EEc--cccCcccceEEEEEecHHHHHHHHHHccCc
Confidence            458999999999999999999985544 4433 111  112356678999999999999999999875

>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]

Probab=95.43  E-value=0.037  Score=58.95  Aligned_cols=88  Identities=25%  Similarity=0.269  Sum_probs=69.3

Q ss_pred             HHHHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhh----ccce
Q 017670          196 IRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKL----EEGC  271 (368)
Q Consensus       196 lr~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kl----n~~c  271 (368)
                      ++.-+-.|..|.|.||-+-.|.++|-+.|.+- ++--+|++.-+... ...-|.|||-|+|-.+|..+|.--    ..|-
T Consensus       285 ~~en~~~~~tVFvRNL~fD~tEEel~~~fskF-G~v~ya~iV~~k~T-~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~  362 (678)
T KOG0127|consen  285 TRENITEGKTVFVRNLPFDTTEEELKEHFSKF-GEVKYAIIVKDKDT-GHSKGTAFVKFKTQIAAQNCIEAASPASEDGS  362 (678)
T ss_pred             ccccccccceEEEecCCccccHHHHHHHHHhh-ccceeEEEEeccCC-CCcccceEEEeccHHHHHHHHHhcCccCCCce
Confidence            44556678999999999999999999999874 45557765544433 688899999999999999999887    5554


Q ss_pred             eeecCCceeeeccCC
Q 017670          272 LLLSNGRPLLGSIGT  286 (368)
Q Consensus       272 L~ls~GRPL~~S~g~  286 (368)
                      ++| +||-|-.+.++
T Consensus       363 ~ll-~GR~Lkv~~Av  376 (678)
T KOG0127|consen  363 VLL-DGRLLKVTLAV  376 (678)
T ss_pred             EEE-eccEEeeeecc
Confidence            556 99999855543

>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]

Probab=95.15  E-value=0.066  Score=57.13  Aligned_cols=79  Identities=19%  Similarity=0.212  Sum_probs=66.3

Q ss_pred             EEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeecc
Q 017670          205 LVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSI  284 (368)
Q Consensus       205 lV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S~  284 (368)
                      .|.|.||--+-...|++-+|...+.- .++ .|| .-++..-+|-|||-|+-+.+|..||..+|.--+   +|||+-.-.
T Consensus       119 rLIIRNLPf~~k~~dLk~vFs~~G~V-~Ei-~IP-~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i---~gR~VAVDW  192 (678)
T KOG0127|consen  119 RLIIRNLPFKCKKPDLKNVFSNFGKV-VEI-VIP-RKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKI---DGRPVAVDW  192 (678)
T ss_pred             eEEeecCCcccCcHHHHHHHhhcceE-EEE-Ecc-cCCCCCccceEEEEEeeHHHHHHHHHhccCcee---cCceeEEee
Confidence            57899999999999999999886653 344 577 667788889999999999999999999999877   999998666


Q ss_pred             CCCCC
Q 017670          285 GTPCF  289 (368)
Q Consensus       285 g~~~~  289 (368)
                      +++.+
T Consensus       193 AV~Kd  197 (678)
T KOG0127|consen  193 AVDKD  197 (678)
T ss_pred             ecccc
Confidence            66554

>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]

Probab=94.97  E-value=0.06  Score=54.61  Aligned_cols=79  Identities=25%  Similarity=0.390  Sum_probs=61.3

Q ss_pred             cccEEEEecCCCCCCchHHH---HHHHHH---hhcccee--cccCCcccCCCCCceEEEEEechHHHHHHHHhhccceee
Q 017670          202 HGTLVVLENLDPSYTSTVVE---DLVWHA---FKENCSA--KMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLL  273 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVe---dLi~~a---~ke~c~A--kmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~  273 (368)
                      .-+.|.|.|+   ||..+.+   +|+.+.   +.+.|.-  .+=.-+-|+.+|-|-|.|.|++.++|+.+|.-|+...+ 
T Consensus       264 ~~~tVi~kn~---Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~f-  339 (382)
T KOG1548|consen  264 ADRTVILKNM---FTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWF-  339 (382)
T ss_pred             CCcEEEeeec---CCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeee-
Confidence            3578889998   7777766   666664   4555542  12223568889999999999999999999999999988 


Q ss_pred             ecCCceeeeccCC
Q 017670          274 LSNGRPLLGSIGT  286 (368)
Q Consensus       274 ls~GRPL~~S~g~  286 (368)
                        +||-|.|+.-.
T Consensus       340 --dgRql~A~i~D  350 (382)
T KOG1548|consen  340 --DGRQLTASIWD  350 (382)
T ss_pred             --cceEEEEEEeC
Confidence              99999998643

>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]

Probab=94.79  E-value=0.07  Score=55.90  Aligned_cols=74  Identities=24%  Similarity=0.234  Sum_probs=61.5

Q ss_pred             cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670          204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG  282 (368)
Q Consensus       204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~  282 (368)
                      |-|||.|+-|-|.=-|+.|||++...|--++-..--  -+.-.-|-|-|.|++.|-+.-|+.+||---|   +||||+.
T Consensus        45 R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D--~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~---~GR~l~v  118 (608)
T KOG4212|consen   45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD--ESGKARGCAVVEFKDPENVQKALEKLNKYEV---NGRELVV  118 (608)
T ss_pred             ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc--cCCCcCCceEEEeeCHHHHHHHHHHhhhccc---cCceEEE
Confidence            459999999999999999999998888666532211  1226678899999999999999999999888   9999983

>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2

Probab=94.52  E-value=0.12  Score=43.32  Aligned_cols=69  Identities=19%  Similarity=0.212  Sum_probs=56.4

Q ss_pred             cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhcccee
Q 017670          204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL  272 (368)
Q Consensus       204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL  272 (368)
                      |.|-|.|+-..||.+++.++|.+.++-.-.=--.|...-..-|.|.|||=|.+.++|......+++..+
T Consensus         2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w   70 (97)
T PF04059_consen    2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKW   70 (97)
T ss_pred             eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCcc
Confidence            789999999999999999999987654333333444545558999999999999999999999887766

It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).

>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]

Probab=94.49  E-value=0.067  Score=50.50  Aligned_cols=95  Identities=17%  Similarity=0.120  Sum_probs=63.0

Q ss_pred             HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      ...|.-+.++||||.+...-+=|+|+--+.+...-++.+ ..+..-.-|-+|+.|.+.++++.||..+|.-.|   .+||
T Consensus        93 l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~r-d~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l---~nr~  168 (203)
T KOG0131|consen   93 LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMR-DPDTGNPKGFGFINYASFEASDAAIGSMNGQYL---CNRP  168 (203)
T ss_pred             ccccccccccccCcchhHHHHHHHHHhccccccCCcccc-cccCCCCCCCeEEechhHHHHHHHHHHhccchh---cCCc
Confidence            345667789999996665555566655444433322221 222223345799999999999999999999988   9999


Q ss_pred             eeeccCCCCCCCCCCccccceeh
Q 017670          280 LLGSIGTPCFTGKQSKFVGHLAL  302 (368)
Q Consensus       280 L~~S~g~~~~p~k~s~f~GHl~i  302 (368)
                      .+-+.+--.+-+.    -+|.+-
T Consensus       169 itv~ya~k~~~kg----~~~g~~  187 (203)
T KOG0131|consen  169 ITVSYAFKKDTKG----ERHGTA  187 (203)
T ss_pred             eEEEEEEecCCCc----ccCCCH
Confidence            9977665444333    455543

>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]

Probab=93.64  E-value=0.11  Score=47.60  Aligned_cols=75  Identities=13%  Similarity=0.081  Sum_probs=59.7

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      +|=+|++.++++--|.+||+|.|.+-+..+-.-  .+..--+.+--|+|+|-|-|.+.|.+||..+|..-|   =|.++-
T Consensus        71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNih--LNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~l---l~q~v~  145 (170)
T KOG0130|consen   71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIH--LNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAEL---LGQNVS  145 (170)
T ss_pred             eeEEEEEeccCcchhHHHHHHHHhhccccccee--eccccccccccceeeeehHhHHHHHHHHHhccchhh---hCCcee
Confidence            577899999999999999999999877654332  333344456778999999999999999999998777   255554

>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes

Probab=93.50  E-value=0.25  Score=41.76  Aligned_cols=71  Identities=20%  Similarity=0.335  Sum_probs=47.1

Q ss_pred             cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeec
Q 017670          204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS  283 (368)
Q Consensus       204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S  283 (368)
                      ++||+.||--.....-|.-=+++. -++|--|++..+      .|.|.+-|.+.+.|+.|.++|++--+   .|+-+.-+
T Consensus         3 s~L~V~NLP~~~d~~~I~~RL~qL-sdNCGGkVl~v~------~~tAilrF~~~~~A~RA~KRmegEdV---fG~kI~v~   72 (90)
T PF11608_consen    3 SLLYVSNLPTNKDPSSIKNRLRQL-SDNCGGKVLSVS------GGTAILRFPNQEFAERAQKRMEGEDV---FGNKISVS   72 (90)
T ss_dssp             EEEEEES--TTS-HHHHHHHHHHH-HHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--S---SSS--EEE
T ss_pred             cEEEEecCCCCCCHHHHHHHHHHH-hhccCCEEEEEe------CCEEEEEeCCHHHHHHHHHhhccccc---ccceEEEE
Confidence            789999998777766666555553 369999999874      48999999999999999999997755   66666544


Q ss_pred             c
Q 017670          284 I  284 (368)
Q Consensus       284 ~  284 (368)
                      +
T Consensus        73 ~   73 (90)
T PF11608_consen   73 F   73 (90)
T ss_dssp             S
T ss_pred             E
Confidence            3

Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.

>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation

Probab=92.99  E-value=0.11  Score=43.40  Aligned_cols=60  Identities=23%  Similarity=0.278  Sum_probs=36.2

Q ss_pred             ccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccc
Q 017670          203 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEG  270 (368)
Q Consensus       203 GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~  270 (368)
                      |.+|.|.+++...+-.||.++|.+.+       -|.-+-| .+-...|+|=|.+.++|..|+.++...
T Consensus         1 G~il~~~g~~~~~~re~iK~~f~~~g-------~V~yVD~-~~G~~~g~VRf~~~~~A~~a~~~~~~~   60 (105)
T PF08777_consen    1 GCILKFSGLGEPTSREDIKEAFSQFG-------EVAYVDF-SRGDTEGYVRFKTPEAAQKALEKLKEA   60 (105)
T ss_dssp             --EEEEEE--SS--HHHHHHHT-SS---------EEEEE---TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred             CeEEEEecCCCCcCHHHHHHHHHhcC-------CcceEEe-cCCCCEEEEEECCcchHHHHHHHHHhc
Confidence            78999999999999888877776633       2222333 244559999999999999999999987

It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.

>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]

Probab=92.16  E-value=0.24  Score=47.10  Aligned_cols=62  Identities=21%  Similarity=0.030  Sum_probs=51.9

Q ss_pred             cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeec
Q 017670          204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLS  275 (368)
Q Consensus       204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls  275 (368)
                      ..|||.+|.+...-.|||+++|.-+++.-..          --+|-+||+|...-+|+-||.-||..-|+..
T Consensus         2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~----------mk~gf~fv~fed~rda~Dav~~l~~~~l~~e   63 (216)
T KOG0106|consen    2 PRVYIGRLPYRARERDVERFFKGYGKIPDAD----------MKNGFGFVEFEDPRDADDAVHDLDGKELCGE   63 (216)
T ss_pred             CceeecccCCccchhHHHHHHhhccccccce----------eecccceeccCchhhhhcccchhcCceecce
Confidence            4699999999999999999999988765433          3456679999999999999999998877443

>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons

Probab=91.97  E-value=0.082  Score=47.70  Aligned_cols=73  Identities=16%  Similarity=0.272  Sum_probs=48.7

Q ss_pred             HhcccEEEEecCCCCCCchHHHHHHHHHhhcc---ceec-ccCCcccCCCCCceEEEEEechHHHHHHHHhhcccee
Q 017670          200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKEN---CSAK-MIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL  272 (368)
Q Consensus       200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~---c~Ak-mI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL  272 (368)
                      ...|+.|.|.+|-|++|.++..+.|..++...   .+.. ..+...|..+.+.+||+.|.+.++...+...+++--.
T Consensus         4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F   80 (176)
T PF03467_consen    4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF   80 (176)
T ss_dssp             -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred             cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence            35688999999999999999888777645544   2222 3556667678888999999999999999999987543

Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.

>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]

Probab=91.62  E-value=0.3  Score=51.39  Aligned_cols=67  Identities=21%  Similarity=0.223  Sum_probs=49.7

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhcc
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEE  269 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~  269 (368)
                      +---+|.|.-|-.+.|..||.|.|.  +=+....=+.=..-+-.|.+|.|||-|.|-+.|+.|+.+-.+
T Consensus       101 ~~d~vVRLRGLPfscte~dI~~FFa--GL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre  167 (510)
T KOG4211|consen  101 ANDGVVRLRGLPFSCTEEDIVEFFA--GLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRE  167 (510)
T ss_pred             CCCceEEecCCCccCcHHHHHHHhc--CCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHH
Confidence            3456899999999999999998874  222222212122344468999999999999999999987654

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=91.47  E-value=0.42  Score=49.09  Aligned_cols=81  Identities=17%  Similarity=0.250  Sum_probs=60.0

Q ss_pred             cccEEEEecCCCCCCchHHH------HHHHHHhhccceecccCCcccCC-CCCceE--EEEEechHHHHHHHHhhcccee
Q 017670          202 HGTLVVLENLDPSYTSTVVE------DLVWHAFKENCSAKMIPRVAFAS-PYFGQS--FVIFKTREVAELVVTKLEEGCL  272 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVe------dLi~~a~ke~c~AkmI~~~~ys~-p~sG~A--~VIF~treaAdsAi~Kln~~cL  272 (368)
                      |.-|||+-.+-|-|..+|+.      +.|-+-++.+-.+  |++-+-+. --+|-|  |+-|.|+++|.++|..+++.++
T Consensus       113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIv--vNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~  190 (480)
T COG5175         113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIV--VNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL  190 (480)
T ss_pred             ecceeEEecCCCCCCcccccccccchhhhhhccceeEEE--ecccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence            34578888999999999965      5666666655444  44443222 222224  8999999999999999999988


Q ss_pred             eecCCceeeeccCCC
Q 017670          273 LLSNGRPLLGSIGTP  287 (368)
Q Consensus       273 ~ls~GRPL~~S~g~~  287 (368)
                         |||-|-|+-|+-
T Consensus       191 ---DGr~lkatYGTT  202 (480)
T COG5175         191 ---DGRVLKATYGTT  202 (480)
T ss_pred             ---cCceEeeecCch
Confidence               999999998863

>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=91.34  E-value=0.18  Score=54.74  Aligned_cols=73  Identities=25%  Similarity=0.247  Sum_probs=62.3

Q ss_pred             ccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccC-CCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          203 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFA-SPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       203 GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys-~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      ||.|+|+|+-..-|.-||+.||---++++|.=  ||.- +. .-|.|-|||-|-|...|..|+.-|-++-|   .||-||
T Consensus       613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvR--lPKK-~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHl---yGRrLV  686 (725)
T KOG0110|consen  613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVR--LPKK-IGKGAHRGFGFVDFLTPREAKNAFDALGSTHL---YGRRLV  686 (725)
T ss_pred             cceeeeeccchHHHHHHHHHHHhcccceeeec--cchh-hcchhhccceeeeccCcHHHHHHHHhhcccce---echhhh
Confidence            99999999999999999999998877887754  3433 22 36789999999999999999999998888   788777

>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]

Probab=91.32  E-value=0.53  Score=45.81  Aligned_cols=111  Identities=17%  Similarity=0.118  Sum_probs=75.3

Q ss_pred             cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee--
Q 017670          204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL--  281 (368)
Q Consensus       204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~--  281 (368)
                      |+|++.+|-.--+.+++++-|. -|+|..+|.+|-- .+..+.-|..||-|+.+++|.+|..--|-. +   |||--=  
T Consensus        13 TKifVggL~w~T~~~~l~~yFe-qfGeI~eavvitd-~~t~rskGyGfVTf~d~~aa~rAc~dp~pi-I---dGR~aNcn   86 (247)
T KOG0149|consen   13 TKIFVGGLAWETHKETLRRYFE-QFGEIVEAVVITD-KNTGRSKGYGFVTFRDAEAATRACKDPNPI-I---DGRKANCN   86 (247)
T ss_pred             EEEEEcCcccccchHHHHHHHH-HhCceEEEEEEec-cCCccccceeeEEeecHHHHHHHhcCCCCc-c---cccccccc
Confidence            7888888888888888887664 5888999977753 344688889999999999999999877764 3   888743  


Q ss_pred             -eccCCC---CCCCCCCccccceehhhHHH---HHHHHHHhhhccc
Q 017670          282 -GSIGTP---CFTGKQSKFVGHLALDKLKF---QMQREMREAVSTS  320 (368)
Q Consensus       282 -~S~g~~---~~p~k~s~f~GHl~i~k~r~---q~qrEmr~AVSTS  320 (368)
                       ||.|.-   ..|..+.-..||+-..-..|   -.|..++--+..|
T Consensus        87 lA~lg~~pR~~~~~~~~~~~g~~~~~~~~~~~~~~q~~~~~~~~~s  132 (247)
T KOG0149|consen   87 LASLGGKPRPVPPSQPQQAPGGQQNRPTGMLRALPQQTFGIPPHYS  132 (247)
T ss_pred             hhhhcCccCCCCCCCcccccccccCCcccccccccccccCCCCccc
Confidence             344322   33444555556654433333   2335555545444

>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]

Probab=91.23  E-value=0.39  Score=50.29  Aligned_cols=89  Identities=18%  Similarity=0.173  Sum_probs=70.1

Q ss_pred             ccEEEEecCCCCCCchHHHHHHHHHhh-ccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          203 GTLVVLENLDPSYTSTVVEDLVWHAFK-ENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       203 GtlV~LqNLDps~ts~dVedLi~~a~k-e~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      .+.|+|.=|.-..|..||++||..-+. |.|+-   =+..+ ...-|-|||-|.+||-|..||+-||...-|=--.-|||
T Consensus       124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~i---lrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLV  199 (510)
T KOG0144|consen  124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYI---LRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLV  199 (510)
T ss_pred             chhhhhhhccccccHHHHHHHHHhhCccchhhh---eeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceE
Confidence            467889999999999999999999654 34442   23333 46679999999999999999999998877665668999


Q ss_pred             eccCCCCCCCCCCc
Q 017670          282 GSIGTPCFTGKQSK  295 (368)
Q Consensus       282 ~S~g~~~~p~k~s~  295 (368)
                      --++++.-|+...+
T Consensus       200 VkFADtqkdk~~~~  213 (510)
T KOG0144|consen  200 VKFADTQKDKDGKR  213 (510)
T ss_pred             EEecccCCCchHHH
Confidence            88888777765443

>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]

Probab=88.92  E-value=0.7  Score=49.18  Aligned_cols=117  Identities=21%  Similarity=0.161  Sum_probs=80.9

Q ss_pred             EEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeeccC
Q 017670          206 VVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSIG  285 (368)
Q Consensus       206 V~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S~g  285 (368)
                      ||+.||+.-.|.+++..||.--++.  +.=+.+...-.....|..|+-|...+.|..|+-.||.  |-| .||+|.-+-+
T Consensus       281 l~vgnLHfNite~~lr~ifepfg~I--e~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lng--fel-AGr~ikV~~v  355 (549)
T KOG0147|consen  281 LYVGNLHFNITEDMLRGIFEPFGKI--ENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNG--FEL-AGRLIKVSVV  355 (549)
T ss_pred             hhhcccccCchHHHHhhhccCcccc--eeeeeccccccccccCcceEEEecHHHHHHHHHHhcc--cee-cCceEEEEEe
Confidence            7999999999999988777544332  3323333333468899999999999999999999999  444 9999986655


Q ss_pred             CCCCCCC---CCccc------cceeh-hhHHHHHHHHHHhhhccccCCCCCc
Q 017670          286 TPCFTGK---QSKFV------GHLAL-DKLKFQMQREMREAVSTSHCSQPNS  327 (368)
Q Consensus       286 ~~~~p~k---~s~f~------GHl~i-~k~r~q~qrEmr~AVSTSHCSQPNt  327 (368)
                      +-.+-.+   +..|-      +-|++ +-.|.|.|+..-.+.-+|-||-+|+
T Consensus       356 ~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~  407 (549)
T KOG0147|consen  356 TERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAIS  407 (549)
T ss_pred             eeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhh
Confidence            3332222   11111      11111 2337788888888888888888775

>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]

Probab=88.34  E-value=0.78  Score=50.57  Aligned_cols=82  Identities=20%  Similarity=0.127  Sum_probs=64.4

Q ss_pred             HHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCC---CCCceEEEEEechHHHHHHHHhhccceeeec
Q 017670          199 AHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFAS---PYFGQSFVIFKTREVAELVVTKLEEGCLLLS  275 (368)
Q Consensus       199 A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~---p~sG~A~VIF~treaAdsAi~Kln~~cL~ls  275 (368)
                      +.-+-|-||+.||-|++++..+-..|-.-+-+.-.-.|-|++--..   +|+  +||-|..|.+|+.|+..|++-.+   
T Consensus       170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~c--gfvafmnR~D~era~k~lqg~iv---  244 (877)
T KOG0151|consen  170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNC--GFVAFMNRADAERALKELQGIIV---  244 (877)
T ss_pred             CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhcccccc--ceeeehhhhhHHHHHHHhcceee---
Confidence            4556789999999999998877666655566777778888887655   555  49999999999999999999866   


Q ss_pred             CCceeeeccC
Q 017670          276 NGRPLLGSIG  285 (368)
Q Consensus       276 ~GRPL~~S~g  285 (368)
                      -+++|---.|
T Consensus       245 ~~~e~K~gWg  254 (877)
T KOG0151|consen  245 MEYEMKLGWG  254 (877)
T ss_pred             eeeeeeeccc
Confidence            5666654444

>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]

Probab=86.86  E-value=0.77  Score=45.27  Aligned_cols=120  Identities=18%  Similarity=0.196  Sum_probs=80.8

Q ss_pred             cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeec-CCceee-
Q 017670          204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLS-NGRPLL-  281 (368)
Q Consensus       204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls-~GRPL~-  281 (368)
                      .-||+.||-+.+.++..+.-++.-+.--...   -.+-|...++|.-.|-|-.+-.|..|.++.+++||.+. .|||.. 
T Consensus        32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av---~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~V  108 (275)
T KOG0115|consen   32 AELYVVNLMQGASNDLLEQAFRRFGPIERAV---AKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGV  108 (275)
T ss_pred             ceEEEEecchhhhhHHHHHhhhhcCccchhe---eeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCC
Confidence            6799999999998888777777544332222   11345559999999999999999999999999998442 344422 


Q ss_pred             -------eccCCCCCCCCCCccccceehhhHHHHHHHHHHhhhccccCCCCCcchhhcccchhhhHH
Q 017670          282 -------GSIGTPCFTGKQSKFVGHLALDKLKFQMQREMREAVSTSHCSQPNSLEYDMAIEWSLLQE  341 (368)
Q Consensus       282 -------~S~g~~~~p~k~s~f~GHl~i~k~r~q~qrEmr~AVSTSHCSQPNtiEYdmA~eW~Llqe  341 (368)
                             +--|+|-. ..+..+.||              +.+-..-|-.|+++.||.-+..|..|-+
T Consensus       109 eP~eq~~d~~G~~~k-~~~~~~~~~--------------~e~~~p~r~a~~g~fe~e~~~~~k~l~~  160 (275)
T KOG0115|consen  109 EPMEQPDDNDGGPEK-GGGGGPSGP--------------KEREQPPRFAQQGSFEVEYGSRWKMLGG  160 (275)
T ss_pred             ChhhccCCCCcchhh-cCCCCCCCC--------------ccccCCchhccccccccccCcccccccc
Confidence                   11111111 112233333              2334456788999999999999988743

>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]

Probab=85.71  E-value=1.1  Score=43.10  Aligned_cols=62  Identities=16%  Similarity=0.053  Sum_probs=47.6

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhc
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLE  268 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln  268 (368)
                      .-+.+|+.||-+-+-.-||||||..-+...-.-.-+++     .+.+.|||-|-..-+|+-||.--|
T Consensus         5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~-----g~ppfafVeFEd~RDAeDAiygRd   66 (241)
T KOG0105|consen    5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP-----GPPPFAFVEFEDPRDAEDAIYGRD   66 (241)
T ss_pred             ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC-----CCCCeeEEEecCccchhhhhhccc
Confidence            34679999999999999999999987765433311111     235679999999999999998655

>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]

Probab=84.19  E-value=1.4  Score=45.93  Aligned_cols=59  Identities=22%  Similarity=0.203  Sum_probs=46.0

Q ss_pred             ccEEEEecCCCCCCchHHHHHHH-----HHhhccceecccCCccc-CCCCCceEEEEEechHHHHHHHHh
Q 017670          203 GTLVVLENLDPSYTSTVVEDLVW-----HAFKENCSAKMIPRVAF-ASPYFGQSFVIFKTREVAELVVTK  266 (368)
Q Consensus       203 GtlV~LqNLDps~ts~dVedLi~-----~a~ke~c~AkmI~~~~y-s~p~sG~A~VIF~treaAdsAi~K  266 (368)
                      --.|.+..|-+.-|..||-+.|-     -.+.+..--     +++ +++.+|.|||.|..-+.|+.|+.|
T Consensus       161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLF-----V~rpdgrpTGdAFvlfa~ee~aq~aL~k  225 (508)
T KOG1365|consen  161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLF-----VTRPDGRPTGDAFVLFACEEDAQFALRK  225 (508)
T ss_pred             ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEE-----EECCCCCcccceEEEecCHHHHHHHHHH
Confidence            45788999999999999998874     122332222     455 789999999999999999999876

>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=84.14  E-value=1.8  Score=46.14  Aligned_cols=65  Identities=28%  Similarity=0.301  Sum_probs=51.1

Q ss_pred             HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhcccee
Q 017670          200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL  272 (368)
Q Consensus       200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL  272 (368)
                      .-+||||++ |||++++.+++..||- +++|-.+.+|-++      .-|..||-|=.--.|+.|++.||..-+
T Consensus        73 ~~~~~L~v~-nl~~~Vsn~~L~~~f~-~yGeir~ir~t~~------~~~~~~v~FyDvR~A~~Alk~l~~~~~  137 (549)
T KOG4660|consen   73 MNQGTLVVF-NLPRSVSNDTLLRIFG-AYGEIREIRETPN------KRGIVFVEFYDVRDAERALKALNRREI  137 (549)
T ss_pred             CccceEEEE-ecCCcCCHHHHHHHHH-hhcchhhhhcccc------cCceEEEEEeehHhHHHHHHHHHHHHh
Confidence            457887765 9999999999999985 5556666544333      457999999999999999999987544

>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]

Probab=83.87  E-value=1.9  Score=43.23  Aligned_cols=66  Identities=15%  Similarity=0.148  Sum_probs=50.5

Q ss_pred             ccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccc
Q 017670          203 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEG  270 (368)
Q Consensus       203 GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~  270 (368)
                      |.-+|++.|--..|--|+|.||+.-++.. +.|+.. .....-.-|-+|+-|-.|+.|+.||+-||..
T Consensus       127 ~aNLYvSGlPktMtqkelE~iFs~fGrII-tSRiL~-dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~  192 (360)
T KOG0145|consen  127 DANLYVSGLPKTMTQKELEQIFSPFGRII-TSRILV-DQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQ  192 (360)
T ss_pred             ccceEEecCCccchHHHHHHHHHHhhhhh-hhhhhh-hcccceecceeEEEecchhHHHHHHHhccCC
Confidence            55799999999999999999999866542 222211 1122355678999999999999999999854

>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]

Probab=83.58  E-value=2  Score=45.49  Aligned_cols=58  Identities=26%  Similarity=0.147  Sum_probs=42.0

Q ss_pred             cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHh
Q 017670          204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTK  266 (368)
Q Consensus       204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~K  266 (368)
                      -+|.|+-|--+-|-.||.|.|....=++   -.|  +-.+.+++|.|||.|++-+++..|++|
T Consensus        11 ~~vr~rGLPwsat~~ei~~Ff~~~~I~~---~~~--~r~~Gr~sGeA~Ve~~seedv~~Alkk   68 (510)
T KOG4211|consen   11 FEVRLRGLPWSATEKEILDFFSNCGIEN---LEI--PRRNGRPSGEAYVEFTSEEDVEKALKK   68 (510)
T ss_pred             eEEEecCCCccccHHHHHHHHhcCceeE---EEE--eccCCCcCcceEEEeechHHHHHHHHh
Confidence            3556666666677778888776544444   222  333479999999999999999999986

>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]

Probab=82.63  E-value=3.4  Score=43.73  Aligned_cols=65  Identities=22%  Similarity=0.318  Sum_probs=49.3

Q ss_pred             chHHHHHHHHHhhccc------eecccCCc-ccCC--CCCceEEEEEechHHHHHHHHhhccceeeecCCceeeeccC
Q 017670          217 STVVEDLVWHAFKENC------SAKMIPRV-AFAS--PYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSIG  285 (368)
Q Consensus       217 s~dVedLi~~a~ke~c------~AkmI~~~-~ys~--p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S~g  285 (368)
                      ..|++||+. .++..|      .--+||++ ....  |-+|.-||-|.+.+++..|+.-|+..-.   +||-+++|.-
T Consensus       416 d~EyeeIlE-dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF---~nRtVvtsYy  489 (500)
T KOG0120|consen  416 DEEYEEILE-DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKF---ANRTVVASYY  489 (500)
T ss_pred             hHHHHHHHH-HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCcee---CCcEEEEEec
Confidence            345556654 444544      33478888 3333  8889999999999999999999999987   9999998753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	368
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 72.6 bits (177), Expect = 5e-14
 Identities = 56/339 (16%), Positives = 97/339 (28%), Gaps = 81/339 (23%)

Query: 66  NELYNGPSNKAKFDSSRKVFDDKIKNRVQKLGLDSNV--HGP----KPTLATIADEDKSK 119
           + LYN     AK++ SR     K++  + +L    NV   G     K  +A         
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176

Query: 120 TKRAVAKDPHGI---DKGPCKKPKLDEELLKPTSGKLVEASSLQPSIVENKSNKQIVEVT 176
             +        I   +   C  P+   E+L+    ++    + +     N          
Sbjct: 177 QCKM----DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN---------I 223

Query: 177 RRPSLDRSKWFKELPWEERIRVAHEHGTLVVLENLDPSYTSTVVEDL-VWHAFKENCSAK 235
           +          + L   +     +E+  L+VL N         V++   W+AF  +C   
Sbjct: 224 KLRIHSIQAELRRLLKSKP----YENC-LLVLLN---------VQNAKAWNAFNLSCKIL 269

Query: 236 MIPR----VAFASPYFGQSFVI------FKTREVAELVVTKLEEGCLLLS----NGRPL- 280
           +  R      F S        +          EV  L++  L+     L        P  
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329

Query: 281 LGSIGTPCFTGK-QSKFVGHLALDKLKFQMQR--------EMRE-----AVSTSHCSQPN 326
           L  I      G        H+  DKL   ++         E R+     +V         
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--------- 380

Query: 327 SLEYDMAIEWSLLQERLDCAWKKL-YEQQELELKKLKVK 364
                  I   LL   +   W  +      + + KL   
Sbjct: 381 -FPPSAHIPTILL-SLI---WFDVIKSDVMVVVNKLHKY 414

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 3e-09
 Identities = 51/407 (12%), Positives = 114/407 (28%), Gaps = 103/407 (25%)

Query: 2   KSSLGEKVSSIGGAQQGEIVRTIKPGITFGDKI--ASSSKVGFEKSKAKSSKALETKEEV 59
           K+ +             ++  + K       KI   +       ++  +  + L  + + 
Sbjct: 163 KTWVA-----------LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211

Query: 60  KSFKDPNELYNGPSNKAKFDSSRKVFDDKIKNRVQK---LGLDSNVHGPK---------P 107
                 +   N         S +      +K++  +   L L  NV   K          
Sbjct: 212 NWTSRSDHSSNIKLR---IHSIQAELRRLLKSKPYENCLLVLL-NVQNAKAWNAFNLSCK 267

Query: 108 TLAT-----IADEDKSKTKRAVAKDPHGIDKGPCKKPKLDEELLKPTSGKL----VEASS 158
            L T     + D   + T   ++ D H          ++   LLK    +      E  +
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHH---SMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324

Query: 159 LQPSIVENKSNKQIVEVTRRPSLDRSKWFKELPWEERIRVAHEHGTLVVLENLDPSYTST 218
             P  +       I E  R   L     +K +  ++   +         L  L+P+    
Sbjct: 325 TNPRRL-----SIIAESIRDG-LATWDNWKHVNCDKLTTIIE-----SSLNVLEPAEYRK 373

Query: 219 VVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIF---KTREVAELVVTKLEEGCLLLS 275
           + + L    F  +  A  IP              +      +    +VV KL +  L+  
Sbjct: 374 MFDRLS--VFPPS--AH-IPT---------ILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

Query: 276 NGRPLLGSIGTPCFTGKQSKFVGH-LALDKL-----KFQMQREMREAVSTSHCSQPNSL- 328
             +    SI                + L+       ++ + R + +  +       + L 
Sbjct: 420 QPKESTISI--------------PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465

Query: 329 --EYDMAIEW-------SLLQERLDCAWKKLYEQQELELKKLKVKLK 366
               D            ++        ++ ++    L+ + L+ K++
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF----LDFRFLEQKIR 508

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	368
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	99.61
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	99.23
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	99.01
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	99.0
2dis_A	109	Unnamed protein product; structural genomics, RRM	99.0
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	98.99
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	98.98
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	98.98
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	98.97
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	98.97
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	98.95
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	98.95
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	98.94
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	98.94
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	98.94
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	98.94
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	98.92
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	98.92
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	98.92
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	98.9
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	98.9
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	98.89
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	98.89
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	98.89
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	98.89
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	98.89
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	98.89
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	98.89
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	98.88
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	98.87
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	98.87
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	98.87
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	98.87
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	98.86
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	98.86
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	98.86
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	98.86
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	98.86
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	98.86
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	98.85
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	98.85
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	98.85
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	98.85
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	98.84
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	98.84
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	98.84
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	98.84
2div_A	99	TRNA selenocysteine associated protein; structural	98.84
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	98.83
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	98.83
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	98.83
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	98.82
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	98.82
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	98.82
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	98.82
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	98.82
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	98.81
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	98.81
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	98.81
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	98.81
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	98.8
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	98.8
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	98.8
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	98.8
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	98.79
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	98.78
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	98.78
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	98.78
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	98.78
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	98.78
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	98.77
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	98.77
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	98.77
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	98.77
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	98.77
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	98.77
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	98.76
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	98.76
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	98.75
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	98.75
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	98.75
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	98.75
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	98.75
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	98.74
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	98.74
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	98.74
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	98.74
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	98.73
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	98.73
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	98.73
1x5o_A	114	RNA binding motif, single-stranded interacting pro	98.73
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	98.73
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	98.72
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	98.72
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	98.72
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	98.72
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	98.71
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	98.71
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	98.7
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	98.69
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	98.69
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	98.69
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	98.68
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	98.68
1x4e_A	85	RNA binding motif, single-stranded interacting pro	98.68
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	98.68
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	98.67
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	98.67
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	98.66
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	98.66
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	98.66
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	98.66
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	98.66
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	98.65
1x5p_A	97	Negative elongation factor E; structure genomics,	98.65
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	98.65
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	98.65
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	98.64
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	98.64
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	98.64
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	98.64
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	98.64
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	98.63
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	98.63
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	98.62
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	98.62
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	98.62
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	98.62
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	98.62
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	98.61
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	98.61
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	98.6
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	98.6
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	98.6
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	98.59
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	98.58
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	98.57
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	98.57
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	98.57
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	98.56
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	98.55
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	98.53
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	98.53
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	98.53
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	98.53
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	98.52
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	98.52
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	98.52
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	98.52
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	98.51
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	98.51
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	98.5
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	98.5
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	98.5
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	98.5
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	98.5
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	98.49
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	98.49
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	98.49
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	98.47
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	98.47
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	98.47
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	98.47
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	97.85
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	98.46
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	98.46
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	98.44
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	98.42
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	98.41
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	98.41
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	98.4
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	98.39
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	98.37
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	98.37
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	98.36
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	98.36
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	98.35
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	98.35
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	98.35
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	98.34
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	98.34
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	98.33
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	98.32
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	98.31
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	98.3
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	98.29
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	98.26
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	98.26
1wf0_A	88	TDP-43, TAR DNA-binding protein-43; structural gen	98.23
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	98.17
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	98.16
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	98.15
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	98.11
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	98.09
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	98.07
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	98.0
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	97.84
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	97.82
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	97.81
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	97.65
1owx_A	121	Lupus LA protein, SS-B, LA; RRM, transcription; NM	97.59
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	97.55
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	97.51
2j8a_A	136	Histone-lysine N-methyltransferase, H3 lysine-4 sp	97.34
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	97.33
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	95.65
2dnr_A	91	Synaptojanin-1; RRM domain, RBD, structural genomi	94.83
1ufw_A	95	Synaptojanin 2; RNP domain, structural genomics, r	93.94
1uw4_A	91	UPF3X; nonsense mediated mRNA decay protein, RNA-b	91.94
1whv_A	100	Poly(A)-specific ribonuclease; RNA recognition mot	88.05
1wey_A	104	Calcipressin 1; structural genomics, RRM domain, r	86.28
3ctr_A	101	Poly(A)-specific ribonuclease PARN; protein-RNA-co	85.46
2dhx_A	104	Poly (ADP-ribose) polymerase family, member 10 var	82.75

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=99.61  E-value=1.6e-15  Score=133.92  Aligned_cols=153  Identities=18%  Similarity=0.259  Sum_probs=119.3

Q ss_pred             ccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeee-cCCceee
Q 017670          203 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLL-SNGRPLL  281 (368)
Q Consensus       203 GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~l-s~GRPL~  281 (368)
                      ++.|||.||++.+|.+||+++|...+ .-..++++..  -+..+.|.|||.|.+.++|..||..||++++++ ..||||+
T Consensus        96 ~~~l~v~nl~~~~t~~~l~~~F~~~G-~i~~v~i~~~--~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~  172 (261)
T 3sde_A           96 GAALTVKNLSPVVSNELLEQAFSQFG-PVEKAVVVVD--DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI  172 (261)
T ss_dssp             SSEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEEE--TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred             CCcccccCCCCCCCHHHHHHHHHhcC-CeEEEEeeeC--CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence            67899999999999999999997654 5556666544  246778999999999999999999997776643 5699999


Q ss_pred             eccCCCCCCCCCCccccceehhhHHHHHHHHHHhhhccccCCCCCcchhhcccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 017670          282 GSIGTPCFTGKQSKFVGHLALDKLKFQMQREMREAVSTSHCSQPNSLEYDMAIEWSLLQERLDCAWKKLYEQQELELKKL  361 (368)
Q Consensus       282 ~S~g~~~~p~k~s~f~GHl~i~k~r~q~qrEmr~AVSTSHCSQPNtiEYdmA~eW~Llqek~~~~w~~L~k~~~~El~k~  361 (368)
                      .....+..+...   .++-.+.+.    +.-.+.--+..++++|++.||++++.|..+++...+++..|++++.++..||
T Consensus       173 v~~~~~~~~~~~---~~~~~~~~~----~~~~~~r~~~p~~~~pgs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l  245 (261)
T 3sde_A          173 VEPMEQFDDEDG---LPEKLMQKT----QQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKL  245 (261)
T ss_dssp             EEECCCEESSSC---CCGGGSCCC----HHHHHHHTSCSEECCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeeccccCccCC---Ccchhhhcc----hhhhhhccCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877765543321   122222221    2223333567899999999999999999999999999999999999999999


Q ss_pred             Hhhh
Q 017670          362 KVKL  365 (368)
Q Consensus       362 ~a~l  365 (368)
                      .+.+
T Consensus       246 ~~~~  249 (261)
T 3sde_A          246 EAEM  249 (261)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8765

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=99.23  E-value=1.1e-11  Score=96.74  Aligned_cols=93  Identities=23%  Similarity=0.206  Sum_probs=69.5

Q ss_pred             CChHHHHHHHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhcc
Q 017670          190 LPWEERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEE  269 (368)
Q Consensus       190 lPWEe~lr~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~  269 (368)
                      +++......-+-+||.|||.||.+.+|.+||+++|...+.. ..++++ +...+..+-|.|||.|.+.++|+.||..||+
T Consensus         6 ~~~~~~~en~~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I-~~v~i~-~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng   83 (99)
T 4fxv_A            6 IHHHHHHENLYFQGTNLIVNYLPQNMTQDELRSLFSSIGEV-ESAKLI-RDKVAGHSLGYGFVNYVTAKDAERAINTLNG   83 (99)
T ss_dssp             ----------CCCCSEEEEESCCTTCCHHHHHHHHHTTSCE-EEEEEE-ECSSSCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred             cccccccccccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEeEee-ecCCCCcccccEEEEECCHHHHHHHHHHhCC
Confidence            45555666678899999999999999999999999876543 344443 2334466778999999999999999999999


Q ss_pred             ceeeecCCceeeeccCCC
Q 017670          270 GCLLLSNGRPLLGSIGTP  287 (368)
Q Consensus       270 ~cL~ls~GRPL~~S~g~~  287 (368)
                      ..|   +||+|..+.+.|
T Consensus        84 ~~~---~gr~l~V~~AkP   98 (99)
T 4fxv_A           84 LRL---QSKTIKVSYARP   98 (99)
T ss_dssp             CEE---TTEECEEEECCB
T ss_pred             CEE---CCEEEEEEEeeC
Confidence            887   999999877654

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=99.01  E-value=4.8e-10  Score=82.54  Aligned_cols=85  Identities=15%  Similarity=0.142  Sum_probs=67.0

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      ..+.|||.||.+.+|.+||+++|...+.. ..++++....-...+.|.|||.|.+.++|..|+..||+..+   +||+|.
T Consensus         3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~   78 (88)
T 4a8x_A            3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKI-KMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQI---DGQEIT   78 (88)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHHTTSCE-EEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEE---TTEECE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCE-EEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeE---CCeEEE
Confidence            46889999999999999999999886543 33333322211123789999999999999999999999988   999999


Q ss_pred             eccCCCCCC
Q 017670          282 GSIGTPCFT  290 (368)
Q Consensus       282 ~S~g~~~~p  290 (368)
                      .+...+.-|
T Consensus        79 v~~a~~~~~   87 (88)
T 4a8x_A           79 ATAVLAPWP   87 (88)
T ss_dssp             EEEECCCCC
T ss_pred             EEECCCCCC
Confidence            888766544

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.00  E-value=1.8e-09  Score=81.18  Aligned_cols=87  Identities=16%  Similarity=0.132  Sum_probs=71.1

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      .++.|||.||.+.+|.+||+++|...+...-.+++ +.......+.|.|||.|.+.++|+.||..||+..|   +||+|.
T Consensus         4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~   79 (96)
T 1x5t_A            4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKI-MRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPIT   79 (96)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEE-CCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE---TTEECE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEE-EEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE---CCEEEE
Confidence            57899999999999999999999986654222133 33344567889999999999999999999999987   999999


Q ss_pred             eccCCCCCCCC
Q 017670          282 GSIGTPCFTGK  292 (368)
Q Consensus       282 ~S~g~~~~p~k  292 (368)
                      ...+.+..+..
T Consensus        80 v~~a~~~~~~~   90 (96)
T 1x5t_A           80 VSYAFKKDSKG   90 (96)
T ss_dssp             EEESCCCCCCC
T ss_pred             EEEecccCCCC
Confidence            88887766554

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.00  E-value=2.3e-09  Score=82.44  Aligned_cols=88  Identities=13%  Similarity=0.106  Sum_probs=71.6

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      .++.|||.||.+.+|.+||+++|...+..-..++++........+-|.|||.|.+.++|..||..||++-..+ +||+|.
T Consensus         7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~-~g~~l~   85 (109)
T 2dis_A            7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL-WGHQIA   85 (109)
T ss_dssp             CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB-TTBCCE
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCcee-cCCeEE
Confidence            4688999999999999999999999876455556665666666888999999999999999999997552223 899999


Q ss_pred             eccCCCCCC
Q 017670          282 GSIGTPCFT  290 (368)
Q Consensus       282 ~S~g~~~~p  290 (368)
                      ...+.+...
T Consensus        86 V~~a~~~~~   94 (109)
T 2dis_A           86 VDWAEPEID   94 (109)
T ss_dssp             EEESCSSCS
T ss_pred             EEEcCCCCC
Confidence            887765443

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.99  E-value=3.4e-09  Score=82.22  Aligned_cols=95  Identities=17%  Similarity=0.194  Sum_probs=78.2

Q ss_pred             ccCCChHHHHHHHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHh
Q 017670          187 FKELPWEERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTK  266 (368)
Q Consensus       187 fK~lPWEe~lr~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~K  266 (368)
                      .+.+++++........++.|||.||.+.+|.+||+++|...+. --.++++..       -|.|||.|.+.++|+.||..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~-i~~v~i~~~-------~g~afV~f~~~~~a~~A~~~   80 (109)
T 1x4g_A            9 TKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQ-IMEIRVFPE-------KGYSFVRFSTHESAAHAIVS   80 (109)
T ss_dssp             SCSCCHHHHHHHSCSSCCEEEEECCSSCCCHHHHHHHHHHHSC-EEEEEEETT-------TTEEEEEESSHHHHHHHHHH
T ss_pred             cccCCccccccCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEeCC-------CCEEEEEECCHHHHHHHHHH
Confidence            3457888877777888999999999999999999999998664 334444432       79999999999999999999


Q ss_pred             hccceeeecCCceeeeccCCCCCCCC
Q 017670          267 LEEGCLLLSNGRPLLGSIGTPCFTGK  292 (368)
Q Consensus       267 ln~~cL~ls~GRPL~~S~g~~~~p~k  292 (368)
                      ||...|   +||+|....+.+.....
T Consensus        81 l~g~~~---~g~~l~v~~a~~~~~~~  103 (109)
T 1x4g_A           81 VNGTTI---EGHVVKCYWGKESPDMT  103 (109)
T ss_dssp             HTTCEE---TTEECEEECCCCCCSSC
T ss_pred             cCCCEE---CCcEEEEEecCCCCCCC
Confidence            999877   99999988886654433

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.98  E-value=1.7e-09  Score=81.08  Aligned_cols=88  Identities=17%  Similarity=0.138  Sum_probs=71.2

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ..++.|||.||.+.+|.+||+++|...+.. ...+++ ....+..+.|.|||.|.+.++|+.||..||+..|   +||+|
T Consensus         3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v-~~v~i~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l   77 (95)
T 2dnz_A            3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKI-DNIVLM-KDSDTGRSKGYGFITFSDSECARRALEQLNGFEL---AGRPM   77 (95)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHHTTTSCE-EEEEEE-CCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCS---SSSCC
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCE-eEEEEe-ecCCCCceeeEEEEEECCHHHHHHHHHHhCCCee---CCcEE
Confidence            357899999999999999999999876543 334333 3333467789999999999999999999999877   99999


Q ss_pred             eeccCCCCCCCCC
Q 017670          281 LGSIGTPCFTGKQ  293 (368)
Q Consensus       281 ~~S~g~~~~p~k~  293 (368)
                      ......+..+...
T Consensus        78 ~V~~a~~~~~~~~   90 (95)
T 2dnz_A           78 RVGHVTERLDGGS   90 (95)
T ss_dssp             EEEESSCCCCCCC
T ss_pred             EEEEcccccCCCC
Confidence            9888877665553

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=98.98  E-value=2.5e-09  Score=81.87  Aligned_cols=81  Identities=15%  Similarity=0.102  Sum_probs=65.7

Q ss_pred             cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeec
Q 017670          204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS  283 (368)
Q Consensus       204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S  283 (368)
                      ++|+|.||.+.+|.+||+++|.+.|.+-..++++ +...+..+-|.|||-|.+.++|..||..++++..  -+||+|...
T Consensus         2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~-~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~--~~gr~i~V~   78 (91)
T 2lxi_A            2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLM-RNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLN--ILGQKVSMH   78 (91)
T ss_dssp             CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSS-SCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEE--ETTEEEEEE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEE-ecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeE--ECCEEEEEE
Confidence            5899999999999999999999987444445444 3344567889999999999999999999877642  299999988


Q ss_pred             cCCC
Q 017670          284 IGTP  287 (368)
Q Consensus       284 ~g~~  287 (368)
                      .+.|
T Consensus        79 ~a~~   82 (91)
T 2lxi_A           79 YSDP   82 (91)
T ss_dssp             CCCS
T ss_pred             EcCC
Confidence            7654

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.97  E-value=1.4e-09  Score=82.96  Aligned_cols=87  Identities=14%  Similarity=0.191  Sum_probs=72.1

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccce-eeecCCce
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGC-LLLSNGRP  279 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~c-L~ls~GRP  279 (368)
                      ..++.|||.||.+.+|.+||+++|...|..-..++++...  +..+.|.|||.|.+.++|+.||..||... |   +||+
T Consensus         7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---~g~~   81 (104)
T 2dhg_A            7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ--TGVSKGYGFVKFTDELEQKRALTECQGAVGL---GSKP   81 (104)
T ss_dssp             SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT--TCCEEEEEEEEESCHHHHHHHHHHTTTCCSS---SSSC
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC--CCCccceEEEEECCHHHHHHHHHHccCCccc---CCEe
Confidence            3578899999999999999999999955555566655443  56788999999999999999999999987 7   9999


Q ss_pred             eeeccCCCCCCCC
Q 017670          280 LLGSIGTPCFTGK  292 (368)
Q Consensus       280 L~~S~g~~~~p~k  292 (368)
                      |......+.....
T Consensus        82 l~v~~a~~~~~~~   94 (104)
T 2dhg_A           82 VRLSVAIPKASRV   94 (104)
T ss_dssp             CCCCBCCCCCSCC
T ss_pred             EEEEEccCCCcCC
Confidence            9988876655444

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.97  E-value=2.7e-09  Score=80.78  Aligned_cols=86  Identities=16%  Similarity=0.034  Sum_probs=69.9

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ..++.|||.||.+.+|.+||+++|...+.. ...+++ ....+..+.|.|||.|.+.++|+.||..||...|   +||+|
T Consensus         6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l   80 (99)
T 1whw_A            6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPL-SELHYP-IDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVF---QGRML   80 (99)
T ss_dssp             CSCEEEEEECCCTTCCHHHHHHHHHTTSCE-EEEECC-CCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEES---SSCEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCE-eEEEEE-ecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEE---CCcEE
Confidence            357899999999999999999999876643 333333 3333567889999999999999999999999877   99999


Q ss_pred             eeccCCCCCCC
Q 017670          281 LGSIGTPCFTG  291 (368)
Q Consensus       281 ~~S~g~~~~p~  291 (368)
                      ......+..+.
T Consensus        81 ~V~~a~~~~~~   91 (99)
T 1whw_A           81 HVLPSTIKKEA   91 (99)
T ss_dssp             EEEECCCCSTT
T ss_pred             EEEEcCCCccc
Confidence            98888766554

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=98.95  E-value=2.5e-09  Score=86.73  Aligned_cols=80  Identities=13%  Similarity=0.107  Sum_probs=67.2

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ..++.|||.||.+..|.+||+++|...+.+-..++++.     ..+.|.|||.|.+.++|+.||.+||+..|   +||+|
T Consensus        26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~-----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l---~Gr~i   97 (111)
T 2jvr_A           26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT-----RDFDGTGALEFPSEEILVEALERLNNIEF---RGSVI   97 (111)
T ss_dssp             CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS-----CSSSCCEEEEESSHHHHHHHHHHTTTEEE---TTEEE
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc-----CCCCCEEEEEECCHHHHHHHHHHcCCCEE---CCeEE
Confidence            35789999999999999999999999874555555432     24779999999999999999999999988   99999


Q ss_pred             eeccCCCC
Q 017670          281 LGSIGTPC  288 (368)
Q Consensus       281 ~~S~g~~~  288 (368)
                      ........
T Consensus        98 ~V~~a~~~  105 (111)
T 2jvr_A           98 TVERDDNP  105 (111)
T ss_dssp             EEEESCC-
T ss_pred             EEEECCCC
Confidence            98776544

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.95  E-value=2.2e-09  Score=81.68  Aligned_cols=88  Identities=16%  Similarity=0.146  Sum_probs=71.1

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ..++.|||.||.+.+|.+||+++|...+.. ...++ +....+..+.|.|||.|.+.++|+.||..||+..|   +||+|
T Consensus        10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i-~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l   84 (102)
T 2cqb_A           10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDI-TDIQI-PLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL---FGRTI   84 (102)
T ss_dssp             CCCSCEEEESCCSSCCHHHHHHHHTTTSCC-CCEEC-CCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE---TTEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHhhccCCE-EEEEE-EecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---CCcEE
Confidence            357899999999999999999999885543 23333 33334467889999999999999999999999877   99999


Q ss_pred             eeccCCCCCCCCC
Q 017670          281 LGSIGTPCFTGKQ  293 (368)
Q Consensus       281 ~~S~g~~~~p~k~  293 (368)
                      ....+.+..+...
T Consensus        85 ~V~~a~~~~~~~~   97 (102)
T 2cqb_A           85 RVNLAKPMRIKES   97 (102)
T ss_dssp             EEEECCCCCCCCC
T ss_pred             EEEeCCCCCCCCC
Confidence            9988877665553

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=98.94  E-value=1.7e-09  Score=79.99  Aligned_cols=85  Identities=15%  Similarity=0.162  Sum_probs=69.2

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ..++.|||.||.+.+|.+||+++|...+.. ..++++ ....+..+.|.|||.|.+.++|..|+ .||+..+   +||+|
T Consensus         4 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~-~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~---~g~~l   77 (89)
T 3ucg_A            4 ADARSIYVGNVDYGATAEELEAHFHGCGSV-NRVTIL-CDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLF---RGRQI   77 (89)
T ss_dssp             HHHTEEEEESCCTTCCHHHHHHHHGGGCCE-EEEEEE-ESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEE---TTEEC
T ss_pred             CcCCEEEEeCCCCCCCHHHHHHHHHhCCCE-EEEEEE-ecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEE---CCcEE
Confidence            357899999999999999999999976543 334333 33445677899999999999999999 9999987   99999


Q ss_pred             eeccCCCCCCC
Q 017670          281 LGSIGTPCFTG  291 (368)
Q Consensus       281 ~~S~g~~~~p~  291 (368)
                      ......+..|+
T Consensus        78 ~V~~a~~~~pg   88 (89)
T 3ucg_A           78 KVIPKRTNRPG   88 (89)
T ss_dssp             EEEETTTTSCC
T ss_pred             EEEEccCCCCC
Confidence            98887766554

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=9.7e-10  Score=84.03  Aligned_cols=86  Identities=19%  Similarity=0.146  Sum_probs=71.9

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ..++.|||.||.+.+|.+||+++|...+. -...+++..   ...+.|.|||.|.+.++|+.||..||+..|   +||+|
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~v~i~~~---~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l   85 (103)
T 2d9p_A           13 YQVVNLYVKNLDDGIDDERLRKAFSPFGT-ITSAKVMME---GGRSKGFGFVCFSSPEEATKAVTEMNGRIV---ATKPL   85 (103)
T ss_dssp             SSCCCEEEECCCTTCCHHHHHHTTTTTSC-EEEEEEEEC---SSSEEEEEEEEESSHHHHHHHHHHHTTCBS---SSSBC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEEcC---CCCcCEEEEEEECCHHHHHHHHHHhCCCEe---CCcEE
Confidence            46899999999999999999999987554 444555543   567889999999999999999999999987   99999


Q ss_pred             eeccCCCCCCCCC
Q 017670          281 LGSIGTPCFTGKQ  293 (368)
Q Consensus       281 ~~S~g~~~~p~k~  293 (368)
                      ......+..+..+
T Consensus        86 ~V~~a~~~~~~~~   98 (103)
T 2d9p_A           86 YVALAQRKEERQS   98 (103)
T ss_dssp             EEEECSSCCCCCC
T ss_pred             EEEEecccccCCC
Confidence            9988877665543

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.94  E-value=4e-09  Score=80.67  Aligned_cols=88  Identities=16%  Similarity=0.135  Sum_probs=70.9

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhh-ccceeeecCCce
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKL-EEGCLLLSNGRP  279 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kl-n~~cL~ls~GRP  279 (368)
                      ..++.|||.||.+.+|.+||+++|...+.. ..++++.....+..+.|.|||.|.+.++|+.||..| |...|   +||+
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~---~g~~   88 (107)
T 2cph_A           13 QTTSKILVRNIPFQANQREIRELFSTFGEL-KTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL---YGRR   88 (107)
T ss_dssp             SCCCCEEEESCCTTCCHHHHHHHHHTTSCE-EEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS---SSCB
T ss_pred             CCCCEEEEeCCCCcCCHHHHHHHHHccCCe-EEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE---CCCE
Confidence            467899999999999999999999886643 334444332456678899999999999999999999 77666   8999


Q ss_pred             eeeccCCCCCCCC
Q 017670          280 LLGSIGTPCFTGK  292 (368)
Q Consensus       280 L~~S~g~~~~p~k  292 (368)
                      |....+.+..+..
T Consensus        89 l~v~~a~~~~~~~  101 (107)
T 2cph_A           89 LVLEWADSEVTVQ  101 (107)
T ss_dssp             CEEEECCCCCCCC
T ss_pred             EEEEeCCCCCCCC
Confidence            9988887765544

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.94  E-value=3.6e-09  Score=80.54  Aligned_cols=87  Identities=10%  Similarity=0.074  Sum_probs=70.2

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ...+.|||.||.+.+|.+||+++|...+.. ..++++. ......+.|.|||.|.+.++|..||..||+..|   +||+|
T Consensus        10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i-~~v~i~~-~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l   84 (102)
T 1x5s_A           10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQI-SEVVVVK-DRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV---DGRQI   84 (102)
T ss_dssp             CCCSEEEEESCCTTCCHHHHHHHHHHHSCC-CEEEECC-CSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT---TSCCC
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhcCCe-EEEEEEe-CCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE---CCeEE
Confidence            457899999999999999999999987653 3444433 333456789999999999999999999999987   99999


Q ss_pred             eeccCCCCCCCC
Q 017670          281 LGSIGTPCFTGK  292 (368)
Q Consensus       281 ~~S~g~~~~p~k  292 (368)
                      ......+....+
T Consensus        85 ~v~~a~~~~~~~   96 (102)
T 1x5s_A           85 RVDQAGKSSDNR   96 (102)
T ss_dssp             EEEEEECCCCCC
T ss_pred             EEEECCCCCCCC
Confidence            988776655443

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.92  E-value=4.3e-09  Score=81.66  Aligned_cols=85  Identities=21%  Similarity=0.260  Sum_probs=70.2

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhcc---ceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCC
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKEN---CSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG  277 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~---c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G  277 (368)
                      ..++.|||.||.+.+|.+||+++|...+...   ...+++     ...+-|.|||.|.+.++|..||..||+..|   +|
T Consensus        23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~---~g   94 (115)
T 2cpx_A           23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-----TGRMRGQAFITFPNKEIAWQALHLVNGYKL---YG   94 (115)
T ss_dssp             SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-----CSSSCSEEEEECSSHHHHHHHHHHSTTCBC---SS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-----CCccceEEEEEECCHHHHHHHHHHhCCCEe---CC
Confidence            3478999999999999999999999977642   122222     567789999999999999999999999877   99


Q ss_pred             ceeeeccCCCCCCCCC
Q 017670          278 RPLLGSIGTPCFTGKQ  293 (368)
Q Consensus       278 RPL~~S~g~~~~p~k~  293 (368)
                      |+|....+.+..+..+
T Consensus        95 ~~l~v~~a~~~~~~~~  110 (115)
T 2cpx_A           95 KILVIEFGKNKKQRSS  110 (115)
T ss_dssp             CBCEEEECCCCSCCCC
T ss_pred             cEEEEEEccCCCCCCC
Confidence            9999998877665553

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.92  E-value=4.5e-09  Score=81.56  Aligned_cols=88  Identities=13%  Similarity=0.046  Sum_probs=71.4

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccc-------eecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENC-------SAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLL  273 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c-------~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~  273 (368)
                      ..++.|||.||.+.+|.+||+++|...+....       .++++ ....+..+.|.|||.|.+.++|..||..||+..| 
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~-~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~-   90 (113)
T 2cpe_A           13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIY-LDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF-   90 (113)
T ss_dssp             CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECC-BCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE-
T ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEE-EeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc-
Confidence            45789999999999999999999998776652       23322 2223456789999999999999999999999987 


Q ss_pred             ecCCceeeeccCCCCCCCC
Q 017670          274 LSNGRPLLGSIGTPCFTGK  292 (368)
Q Consensus       274 ls~GRPL~~S~g~~~~p~k  292 (368)
                        +||+|....+.+..+..
T Consensus        91 --~g~~l~V~~a~~~~~~~  107 (113)
T 2cpe_A           91 --QGSKLKVSLARKKPPMN  107 (113)
T ss_dssp             --TTEECEEECSSCCCCST
T ss_pred             --CCCEEEEEECCCCCCCC
Confidence              99999988887766544

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=98.92  E-value=2.5e-09  Score=83.18  Aligned_cols=91  Identities=18%  Similarity=0.163  Sum_probs=72.9

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ..++.|||.||.+.+|.+||+++|...+.. ...+++. ......+.|.|||.|.+.++|+.||..||+..|   +||+|
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~-~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l   87 (115)
T 2dgo_A           13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRI-SDARVVK-DMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL---GGRQI   87 (115)
T ss_dssp             TTCEEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEEE-CTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEE---TTEEC
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEE-cCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---CCEEE
Confidence            467899999999999999999999876543 3344432 222456789999999999999999999999877   99999


Q ss_pred             eeccCCCCCCCCCCcc
Q 017670          281 LGSIGTPCFTGKQSKF  296 (368)
Q Consensus       281 ~~S~g~~~~p~k~s~f  296 (368)
                      ....+.+..+.+.+.+
T Consensus        88 ~V~~a~~~~~~~~~~~  103 (115)
T 2dgo_A           88 RTNWATRKPPAPKSTY  103 (115)
T ss_dssp             EEEESSCCCCCSCCCC
T ss_pred             EEEEccCCCCCCcccc
Confidence            9998887776665443

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=98.90  E-value=2.4e-09  Score=78.53  Aligned_cols=79  Identities=18%  Similarity=0.152  Sum_probs=64.7

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ..++.|||.||.+.+|.+||+++|...+.. ...+ |+.......+.|.|||.|.+.++|..|+..||+..|   +||+|
T Consensus         5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i-~~v~-i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l   79 (85)
T 3mdf_A            5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDI-TDIQ-IPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL---FGRTI   79 (85)
T ss_dssp             CCSSEEEEECCCTTCCHHHHHHHHGGGSCE-EEEE-CCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHhccCCE-EEEE-EEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE---CCcEE
Confidence            357899999999999999999999886643 3333 333444567789999999999999999999999987   99999


Q ss_pred             eecc
Q 017670          281 LGSI  284 (368)
Q Consensus       281 ~~S~  284 (368)
                      ..+.
T Consensus        80 ~v~~   83 (85)
T 3mdf_A           80 RVNL   83 (85)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7654

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=98.90  E-value=6.1e-09  Score=82.48  Aligned_cols=85  Identities=19%  Similarity=0.151  Sum_probs=69.9

Q ss_pred             HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      .+.++.|||.||.+.+|.+||+++|...+.. ...+++...  +..+.|.|||.|.+.++|..||..||+..|   +||+
T Consensus        32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v-~~v~i~~~~--~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~  105 (124)
T 2kt5_A           32 VETGAKLLVSNLDFGVSDADIQELFAEFGTL-KKAAVDYDR--SGRSLGTADVHFERRADALKAMKQYKGVPL---DGRP  105 (124)
T ss_dssp             CSSCEEEEEESCCSSCCHHHHHHHHHTTSCC-SEEEEECCS--SSSCCSEEEEEESSHHHHHHHHHHHTTEES---SSCE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-eEEEEEECC--CCCEeeEEEEEECCHHHHHHHHHHcCCCEE---CCcE
Confidence            4678999999999999999999999886543 344444333  567889999999999999999999999877   9999


Q ss_pred             eeeccCCCCCC
Q 017670          280 LLGSIGTPCFT  290 (368)
Q Consensus       280 L~~S~g~~~~p  290 (368)
                      |....+.+...
T Consensus       106 l~V~~a~~~~~  116 (124)
T 2kt5_A          106 MDIQLVASQID  116 (124)
T ss_dssp             EEEEEECCTTC
T ss_pred             EEEEEeCCCCC
Confidence            98877755433

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=98.89  E-value=1.1e-09  Score=82.51  Aligned_cols=85  Identities=12%  Similarity=-0.005  Sum_probs=61.7

Q ss_pred             cEEEEecCCCCCCchHHHHHHHHHhh-ccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670          204 TLVVLENLDPSYTSTVVEDLVWHAFK-ENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG  282 (368)
Q Consensus       204 tlV~LqNLDps~ts~dVedLi~~a~k-e~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~  282 (368)
                      ..|||.||.+.+|.+||+++|...+- .-..++++. ...+..+-|.|||.|.+.++|+.||..||+..|   +||+|..
T Consensus         2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~-~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~---~gr~i~V   77 (90)
T 3p5t_L            2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFE-NRANGQSKGFALVGVGSEASSKKLMDLLPKREL---HGQNPVV   77 (90)
T ss_dssp             --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEE-CTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCS---SSCCCEE
T ss_pred             eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEe-cCCCCccCcEEEEEECCHHHHHHHHHHcCCCee---CCEEEEE
Confidence            35899999999999999999988762 233444432 233456678999999999999999999999988   9999998


Q ss_pred             ccCCCCCCCC
Q 017670          283 SIGTPCFTGK  292 (368)
Q Consensus       283 S~g~~~~p~k  292 (368)
                      ....+..|..
T Consensus        78 ~~~~~~~~~~   87 (90)
T 3p5t_L           78 TPSNKLEHHH   87 (90)
T ss_dssp             CCC-------
T ss_pred             EECCCCcccc
Confidence            8877665544

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=98.89  E-value=3.9e-09  Score=83.31  Aligned_cols=88  Identities=14%  Similarity=0.022  Sum_probs=71.9

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ..++.|||.||.+.+|.+||+++|...+.. ..++++ .......+.|.|||.|.+.++|..||..||+..|   +|++|
T Consensus        20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l   94 (126)
T 3ex7_B           20 VEGWILFVTGVHEEATEEDIHDKFAEYGEI-KNIHLN-LDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL---MGQPI   94 (126)
T ss_dssp             SSSEEEEEESCCTTCCHHHHHHHHHTTSCE-EEEECC-BCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBS---SSSBC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEE-ecCCCCccceEEEEEECCHHHHHHHHHHhCCCee---CCeEE
Confidence            457899999999999999999999876643 333333 2333567789999999999999999999999887   99999


Q ss_pred             eeccCCCCCCCCC
Q 017670          281 LGSIGTPCFTGKQ  293 (368)
Q Consensus       281 ~~S~g~~~~p~k~  293 (368)
                      ....+.+..+.+.
T Consensus        95 ~v~~a~~~~~~~~  107 (126)
T 3ex7_B           95 SVDWCFVRGPPKG  107 (126)
T ss_dssp             EEEESEESSSCCC
T ss_pred             EEEEecCCCCCCC
Confidence            9998877766554

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=4.3e-09  Score=80.44  Aligned_cols=87  Identities=16%  Similarity=0.132  Sum_probs=69.6

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      +..+.|||.||.+.+|.+||+++|...+.. ..+++ .....+..+.|.|||.|.+.++|+.||..||+..|   +||+|
T Consensus        11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i-~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l   85 (103)
T 2dnm_A           11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRV-GDVYI-PREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAEL---DGREL   85 (103)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHHTTTSCE-EEEEC-CBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCB---TTBCC
T ss_pred             CCCeEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEE-EeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEE---CCcEE
Confidence            467899999999999999999999876543 23332 23333456789999999999999999999999887   99999


Q ss_pred             eeccCCCCCCCC
Q 017670          281 LGSIGTPCFTGK  292 (368)
Q Consensus       281 ~~S~g~~~~p~k  292 (368)
                      ......+.-+..
T Consensus        86 ~V~~a~~~~~~~   97 (103)
T 2dnm_A           86 RVQVARYGRRDL   97 (103)
T ss_dssp             EEEECSSCCSCC
T ss_pred             EEEECCcCCCCC
Confidence            988876654443

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=98.89  E-value=1.1e-08  Score=78.38  Aligned_cols=91  Identities=15%  Similarity=0.120  Sum_probs=72.3

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ...+.|||.||.+.+|.+||+++|...+.. ..++++ ....+..+-|.|||.|.+.++|..||..||+..++--+||+|
T Consensus        11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~-~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l   88 (106)
T 2dgp_A           11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKI-YELTVL-KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI   88 (106)
T ss_dssp             TTCEEEEEESCCTTCCHHHHHHHHHHHSCC-CEEECC-CCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-eEEEEE-ecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence            457899999999999999999999987643 334333 333446778999999999999999999999987655478999


Q ss_pred             eeccCCCCCCCCC
Q 017670          281 LGSIGTPCFTGKQ  293 (368)
Q Consensus       281 ~~S~g~~~~p~k~  293 (368)
                      ....+.+......
T Consensus        89 ~v~~a~~~~~~~~  101 (106)
T 2dgp_A           89 QVKPADSESRGGS  101 (106)
T ss_dssp             EEEECCCCSCCCC
T ss_pred             EEEECCcccccCC
Confidence            9888776655443

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=98.89  E-value=4e-09  Score=81.46  Aligned_cols=86  Identities=8%  Similarity=-0.025  Sum_probs=69.2

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ..++.|||.||.+.+|.+||+++|...+.. ...++ +....+..+.|.|||.|.+.++|..||..||+..|   +||+|
T Consensus        24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l   98 (110)
T 1oo0_B           24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEI-KNIHL-NLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI---MGQTI   98 (110)
T ss_dssp             TTBEEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEC-CBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEE-EecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE---CCcEE
Confidence            467899999999999999999999876643 23333 23333456789999999999999999999999877   99999


Q ss_pred             eeccCCCCCCC
Q 017670          281 LGSIGTPCFTG  291 (368)
Q Consensus       281 ~~S~g~~~~p~  291 (368)
                      ....+.+..|.
T Consensus        99 ~V~~a~~~~~~  109 (110)
T 1oo0_B           99 QVDWCFVKGPK  109 (110)
T ss_dssp             EEEESEESSCC
T ss_pred             EEEEcccCCCC
Confidence            98877665543

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.89  E-value=3.9e-09  Score=80.35  Aligned_cols=79  Identities=11%  Similarity=0.005  Sum_probs=67.8

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      +..+.|||.||.+.+|.+||+++|...+...|  +++     ...+.|.|||.|.+.++|+.||..||+..|   +||+|
T Consensus        17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~--~~~-----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l   86 (97)
T 2e5j_A           17 PLAADVYVGNLPRDARVSDLKRALRELGSVPL--RLT-----WQGPRRRAFLHYPDSAAAQQAVSCLQGLRL---GTDTL   86 (97)
T ss_dssp             CCCCEEEEECCCTTCCHHHHHHHHHHTTCCCS--EEE-----EETTTTEEEEECSSHHHHHHHHHHHTTCCS---SSSCC
T ss_pred             CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEE--EEE-----cCCCCcEEEEEECCHHHHHHHHHHhCCCEE---CCcEE
Confidence            45789999999999999999999999887654  333     147789999999999999999999999987   99999


Q ss_pred             eeccCCCCC
Q 017670          281 LGSIGTPCF  289 (368)
Q Consensus       281 ~~S~g~~~~  289 (368)
                      ....+.+..
T Consensus        87 ~V~~a~~~~   95 (97)
T 2e5j_A           87 RVALARQQR   95 (97)
T ss_dssp             EEEECCCCC
T ss_pred             EEEEcCCCC
Confidence            988776543

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.89  E-value=7.4e-09  Score=79.63  Aligned_cols=88  Identities=16%  Similarity=0.117  Sum_probs=69.5

Q ss_pred             HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhc------cceee
Q 017670          200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLE------EGCLL  273 (368)
Q Consensus       200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln------~~cL~  273 (368)
                      ...++.|||.||.+.+|.+||.++|...+.. ..++++ ....+..+.|.|||.|.+.++|+.||..||      ...| 
T Consensus        12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~-~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~-   88 (111)
T 1x4h_A           12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDL-KYVRVV-LHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL-   88 (111)
T ss_dssp             CCCCCCEEEESCCTTCCHHHHHHHHHTTSCE-EEEECC-BCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES-
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHhcCCe-EEEEEE-ecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE-
Confidence            3568899999999999999999999876543 333333 333346778999999999999999999999      6555 


Q ss_pred             ecCCceeeeccCCCCCCCC
Q 017670          274 LSNGRPLLGSIGTPCFTGK  292 (368)
Q Consensus       274 ls~GRPL~~S~g~~~~p~k  292 (368)
                        +||+|......+.....
T Consensus        89 --~g~~l~v~~a~~~~~~~  105 (111)
T 1x4h_A           89 --DGRQLKVDLAVTRDEAA  105 (111)
T ss_dssp             --SSCEEEEECCCCCCCCC
T ss_pred             --cCEEEEEEECCCCccCC
Confidence              99999988877655443

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=98.88  E-value=2.3e-09  Score=82.26  Aligned_cols=79  Identities=19%  Similarity=0.172  Sum_probs=67.1

Q ss_pred             HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      .+.++.|||.||.+.+|.+||+++|...+.. ..++++...  +..+.|.|||.|.+.++|..||..||+..|   +||+
T Consensus        26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~   99 (107)
T 3ulh_A           26 VETGGKLLVSNLDFGVSDADIQELFAEFGTL-KKAAVHYDR--SGRSLGTADVHFERKADALKAMKQYNGVPL---DGRP   99 (107)
T ss_dssp             CCCSEEEEEESCCTTCCHHHHHHHHHTTSCE-EEEEEEECT--TSCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEECC--CCCcceEEEEEECCHHHHHHHHHHhCCCEe---CCcE
Confidence            6778999999999999999999999976544 455555433  567789999999999999999999999988   9999


Q ss_pred             eeecc
Q 017670          280 LLGSI  284 (368)
Q Consensus       280 L~~S~  284 (368)
                      |....
T Consensus       100 l~V~~  104 (107)
T 3ulh_A          100 MNIQL  104 (107)
T ss_dssp             CEEEE
T ss_pred             EEEEE
Confidence            98654

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=98.87  E-value=2.7e-09  Score=81.75  Aligned_cols=85  Identities=13%  Similarity=0.028  Sum_probs=67.5

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ..++.|||.||.+.+|.+||+++|...+.. ...++ .....+..+.|.|||.|.+.++|+.||..||+..|   +||+|
T Consensus        21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i-~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l   95 (106)
T 1p27_B           21 VEGWILFVTGVHEEATEEDIHDKFAEYGEI-KNIHL-NLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL---MGQPI   95 (106)
T ss_dssp             TTBEEEEEECCCTTCCHHHHHHHHGGGSCE-EEEEE-EECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBS---SSSBC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhccCCe-EEEEE-EecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEE---CCcEE
Confidence            457899999999999999999999886643 22322 22233356679999999999999999999999877   99999


Q ss_pred             eeccCCCCCC
Q 017670          281 LGSIGTPCFT  290 (368)
Q Consensus       281 ~~S~g~~~~p  290 (368)
                      ....+.+..|
T Consensus        96 ~V~~a~~~~~  105 (106)
T 1p27_B           96 SVDWCFVRGP  105 (106)
T ss_dssp             EEEESEESSC
T ss_pred             EEEeecCCCC
Confidence            9877765433

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=98.87  E-value=1e-08  Score=83.58  Aligned_cols=87  Identities=18%  Similarity=0.187  Sum_probs=71.6

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ...+.|||.||.+.+|.+||+++|...+.. ..+++ +....+..+-|.|||.|.+.++|+.||..||+..|   +||||
T Consensus        68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v-~~~~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l  142 (158)
T 2kn4_A           68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRV-GDVYI-PRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL---DGREL  142 (158)
T ss_dssp             CBCCEEEEESCCTTCCHHHHHHHHHHHSCE-EEEEC-CCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEES---SSSEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEE-eecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE---CCeEE
Confidence            457899999999999999999999776643 34443 33334567889999999999999999999999877   99999


Q ss_pred             eeccCCCCCCCC
Q 017670          281 LGSIGTPCFTGK  292 (368)
Q Consensus       281 ~~S~g~~~~p~k  292 (368)
                      ..+.+.+.-|..
T Consensus       143 ~v~~a~~~~~~~  154 (158)
T 2kn4_A          143 RVQMARYGRPPD  154 (158)
T ss_dssp             EEEEECCSSCCC
T ss_pred             EEEECCCCCCCC
Confidence            999887765554

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=98.87  E-value=6.6e-09  Score=79.13  Aligned_cols=82  Identities=13%  Similarity=0.028  Sum_probs=67.5

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ..++.|||.||.+.+|.+||+++|...+....  ++| .......+.|.|||-|.+.++|+.||. ||...|   +||+|
T Consensus        15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--~~~-~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~---~g~~l   87 (101)
T 1fj7_A           15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND--LAV-VDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV---FGNEI   87 (101)
T ss_dssp             SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT--CCC-CEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCB---TTBCC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce--EEE-ecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEE---CCcEE
Confidence            35789999999999999999999999887655  222 233335778999999999999999998 999877   89999


Q ss_pred             eeccCCCCC
Q 017670          281 LGSIGTPCF  289 (368)
Q Consensus       281 ~~S~g~~~~  289 (368)
                      ....+.+..
T Consensus        88 ~V~~a~~~~   96 (101)
T 1fj7_A           88 KLEKPKGRD   96 (101)
T ss_dssp             EEECCSCCC
T ss_pred             EEEEcCCCC
Confidence            987776543

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.87  E-value=3.5e-09  Score=80.52  Aligned_cols=83  Identities=13%  Similarity=0.113  Sum_probs=67.2

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      ..+.|||.||.+.+|.+||+++|...+.. -.++++...  +..+.|.|||.|.+.++|+.||..||+..|   +||+|.
T Consensus        16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~   89 (100)
T 2do4_A           16 EKHKLFISGLPFSCTKEELEEICKAHGTV-KDLRLVTNR--AGKPKGLAYVEYENESQASQAVMKMDGMTI---KENIIK   89 (100)
T ss_dssp             CCSCEEEESCCTTCCHHHHHHHHTTTSCE-EEEEEEECT--TSCEEEEEEEEESSHHHHHHHHHHHTTEES---SSCEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCe-EEEEEEECC--CCCEEeEEEEEECCHHHHHHHHHHhCCCEE---CCEEEE
Confidence            46889999999999999999999886543 334444332  456779999999999999999999999877   999999


Q ss_pred             eccCCCCCC
Q 017670          282 GSIGTPCFT  290 (368)
Q Consensus       282 ~S~g~~~~p  290 (368)
                      .....+..+
T Consensus        90 v~~a~~~~~   98 (100)
T 2do4_A           90 VAISNSGPS   98 (100)
T ss_dssp             EEECCCCSC
T ss_pred             EEECCCCCC
Confidence            877765543

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=98.86  E-value=4.1e-09  Score=82.21  Aligned_cols=88  Identities=11%  Similarity=0.037  Sum_probs=70.9

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      .++.|||.||.+.+|.+||+++|...+. -..++++. ...+..+.|.|||.|.+.++|+.||..||+..|   +||+|.
T Consensus        24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~v~i~~-~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~   98 (115)
T 2cpz_A           24 EGANLFIYHLPQEFGDQDLLQMFMPFGN-VVSAKVFI-DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI---GMKRLK   98 (115)
T ss_dssp             TTCCEEEESCCSSCCHHHHHHHHGGGSC-CSEEEEEE-CSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE---TTEECE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEEE-CCCCCCcCccEEEEECCHHHHHHHHHHcCCCEE---CCEEEE
Confidence            4688999999999999999999987554 33444433 223456778999999999999999999999887   999999


Q ss_pred             eccCCCCCCCCCC
Q 017670          282 GSIGTPCFTGKQS  294 (368)
Q Consensus       282 ~S~g~~~~p~k~s  294 (368)
                      .....+..+.++.
T Consensus        99 V~~a~~~~~~~~~  111 (115)
T 2cpz_A           99 VQLKRSKNDSKSG  111 (115)
T ss_dssp             EECCCCSCCCCCC
T ss_pred             EEEcCCCCcCCCC
Confidence            9988777665543

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.86  E-value=1.4e-08  Score=77.52  Aligned_cols=86  Identities=17%  Similarity=0.112  Sum_probs=69.5

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ...+.|||.||.+.+|.+||+++|...+... .++++...   ..+.|.|||.|.+.++|+.||..||...|   +||+|
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l   85 (103)
T 2cqi_A           13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCK-SCKMITEH---TSNDPYCFVEFYEHRDAAAALAAMNGRKI---LGKEV   85 (103)
T ss_dssp             CCCCEEEEESCCTTCCHHHHHHHHHHHSCEE-EEEEECCC---CSSCCEEEEEESSHHHHHHHHHHHTTEEE---TTEEE
T ss_pred             CCCCEEEEeCCCccCCHHHHHHHHHhcCCEe-EEEEEecC---CCCCCEEEEEECCHHHHHHHHHHhCCCCc---CCCeE
Confidence            4578999999999999999999998876543 34444331   22569999999999999999999999987   89999


Q ss_pred             eeccCCCCCCCCC
Q 017670          281 LGSIGTPCFTGKQ  293 (368)
Q Consensus       281 ~~S~g~~~~p~k~  293 (368)
                      ....+.+....++
T Consensus        86 ~V~~a~~~~~~~~   98 (103)
T 2cqi_A           86 KVNWATTPSSQKS   98 (103)
T ss_dssp             EEEECCCTTCCCC
T ss_pred             EEEECCCCccccc
Confidence            9988877555443

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=98.86  E-value=4e-09  Score=79.06  Aligned_cols=81  Identities=21%  Similarity=0.179  Sum_probs=66.1

Q ss_pred             HHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCc
Q 017670          199 AHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR  278 (368)
Q Consensus       199 A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GR  278 (368)
                      +.+.++.|||.||.+.+|.+||+++|...+.. ...+++....  ..+.|.|||.|.+.++|+.||..||+..|   +||
T Consensus        12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i-~~v~i~~~~~--g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~   85 (95)
T 2ywk_A           12 QEEADRTVFVGNLEARVREEILYELFLQAGPL-TKVTICKDRE--GKPKSFGFVCFKHPESVSYAIALLNGIRL---YGR   85 (95)
T ss_dssp             CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCE-EEEEEEECTT--SCEEEEEEEEESSTHHHHHHHHHHTTCEE---TTE
T ss_pred             CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCE-EEEEEEECCC--CCCceEEEEEECCHHHHHHHHHHhCCCEE---CCC
Confidence            35678999999999999999999999886543 3344443322  56789999999999999999999999987   999


Q ss_pred             eeeeccC
Q 017670          279 PLLGSIG  285 (368)
Q Consensus       279 PL~~S~g  285 (368)
                      +|.....
T Consensus        86 ~l~V~~a   92 (95)
T 2ywk_A           86 PINVSGP   92 (95)
T ss_dssp             ECEEECC
T ss_pred             EEEEEEc
Confidence            9986543

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.86  E-value=4.3e-09  Score=79.55  Aligned_cols=88  Identities=17%  Similarity=0.141  Sum_probs=68.3

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCccc--CCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAF--ASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~y--s~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      .++.|||.||.+.+|.+||+++|...+.. ...+++....-  ...+.|.|||.|.+.++|+.||..||+..|   +||+
T Consensus         4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~   79 (98)
T 2cpf_A            4 GSSGLFIKNLNFSTTEETLKGVFSKVGAI-KSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV---DGHK   79 (98)
T ss_dssp             CCCCEEEESCCTTCCHHHHHHHHHTTSCE-EEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE---TTEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCee---CCeE
Confidence            56889999999999999999999876543 23333322111  125568999999999999999999999977   9999


Q ss_pred             eeeccCCCCCCCCC
Q 017670          280 LLGSIGTPCFTGKQ  293 (368)
Q Consensus       280 L~~S~g~~~~p~k~  293 (368)
                      |......+..+..+
T Consensus        80 l~V~~a~~~~~~~~   93 (98)
T 2cpf_A           80 LEVRISERATKPAS   93 (98)
T ss_dssp             CEEECSSCSSCCCC
T ss_pred             EEEEEccCCCCCCC
Confidence            99888876655443

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.86  E-value=1.1e-08  Score=78.23  Aligned_cols=83  Identities=19%  Similarity=0.260  Sum_probs=67.5

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ...+.|||.||.+.+|.+||+++|...+.. ..+++ .....+..+.|.|||.|.+.++|+.||..||...|   +||+|
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l   87 (105)
T 1x5u_A           13 NQDATVYVGGLDEKVSEPLLWELFLQAGPV-VNTHM-PKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKL---YGKPI   87 (105)
T ss_dssp             CTTTEEEEECCCTTCCHHHHHHHHHTTSCE-EEEEC-CBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBC---SSCBC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEE-EecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeE---CCeEE
Confidence            357899999999999999999999886643 33333 33333467889999999999999999999999877   99999


Q ss_pred             eeccCCCC
Q 017670          281 LGSIGTPC  288 (368)
Q Consensus       281 ~~S~g~~~  288 (368)
                      ....+.+.
T Consensus        88 ~v~~a~~~   95 (105)
T 1x5u_A           88 RVNKASAH   95 (105)
T ss_dssp             EEEETTTT
T ss_pred             EEEECCCC
Confidence            98776554

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=98.86  E-value=9.1e-09  Score=77.93  Aligned_cols=82  Identities=20%  Similarity=0.116  Sum_probs=66.6

Q ss_pred             ccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670          203 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG  282 (368)
Q Consensus       203 GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~  282 (368)
                      .+.|||.||.+.+|.+||+++|...+.. ...+++ ....+..+.|.|||.|.+.++|..||..||+..+   +||+|..
T Consensus         2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~-~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~V   76 (96)
T 2x1f_A            2 SRVVYLGSIPYDQTEEQILDLCSNVGPV-INLKMM-FDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQL---GSRFLKC   76 (96)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHTTSCE-EEEECC-BCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred             CcEEEEECCCCCCCHHHHHHHHHhcCCE-EEEEEE-eCCCCCccceEEEEEECCHHHHHHHHHHhCCCeE---CCeEEEE
Confidence            4789999999999999999999886643 333333 3333467789999999999999999999999877   9999998


Q ss_pred             ccCCCCC
Q 017670          283 SIGTPCF  289 (368)
Q Consensus       283 S~g~~~~  289 (368)
                      ..+.+..
T Consensus        77 ~~a~~~~   83 (96)
T 2x1f_A           77 GYSSNSD   83 (96)
T ss_dssp             EECSCSS
T ss_pred             EEcCCCC
Confidence            8776543

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=98.85  E-value=3.4e-09  Score=78.10  Aligned_cols=82  Identities=18%  Similarity=0.185  Sum_probs=64.4

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ..++.|||.||.+.+|.+||+++|...+.. ...+++ ....+..+.|.|||.|.+.++|+.||..||+..+   +||+|
T Consensus         4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i-~~v~i~-~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l   78 (87)
T 3bs9_A            4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRI-SDARVV-KDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL---GGRQI   78 (87)
T ss_dssp             --CEEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEE-ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred             CCceEEEEeCCCCCCCHHHHHHHHHhcCCE-eEEEEE-ecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---CCeEE
Confidence            357899999999999999999999876543 333333 2233456789999999999999999999999877   99999


Q ss_pred             eeccCCC
Q 017670          281 LGSIGTP  287 (368)
Q Consensus       281 ~~S~g~~  287 (368)
                      ....+.+
T Consensus        79 ~v~~a~~   85 (87)
T 3bs9_A           79 RTNWATR   85 (87)
T ss_dssp             EEEEEC-
T ss_pred             EEEecCC
Confidence            8766543

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=98.85  E-value=4.2e-09  Score=76.93  Aligned_cols=79  Identities=16%  Similarity=0.172  Sum_probs=64.3

Q ss_pred             cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeec
Q 017670          204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS  283 (368)
Q Consensus       204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S  283 (368)
                      +.|||.||.+..|.+||+++|...+.. ..++++ +......+.|.|||.|.+.++|+.|+..||+..|   +||+|...
T Consensus         2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i-~~~~i~-~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~---~g~~l~v~   76 (83)
T 3md1_A            2 FNLFVGDLNVNVDDETLRNAFKDFPSY-LSGHVM-WDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL---NGRPLRIN   76 (83)
T ss_dssp             EEEEEECCCTTCCHHHHHHHHTTSTTE-EEEEEE-ECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE---TTEECEEE
T ss_pred             eEEEEeCCCCCCCHHHHHHHHHhcCCe-eEEEEE-EcCCCCCccceEEEEECCHHHHHHHHHHhcCCee---CCcEEEEE
Confidence            579999999999999999999876543 334333 2233456789999999999999999999999987   99999977


Q ss_pred             cCCC
Q 017670          284 IGTP  287 (368)
Q Consensus       284 ~g~~  287 (368)
                      .+.+
T Consensus        77 ~a~~   80 (83)
T 3md1_A           77 WAAK   80 (83)
T ss_dssp             ECCC
T ss_pred             ecCc
Confidence            6654

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.85  E-value=7.7e-09  Score=79.39  Aligned_cols=85  Identities=11%  Similarity=0.085  Sum_probs=68.2

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      ..+.|||.||.+.+|.+||+++|...+  -..++++........+.|.|||.|.+.++|+.|| .||...|   +||+|.
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~---~g~~l~   87 (104)
T 1wi8_A           14 PPYTAFLGNLPYDVTEESIKEFFRGLN--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL---GNKRIR   87 (104)
T ss_dssp             SCEEEEEESCCSSCCHHHHHHHTTTSC--EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEE---TTEECE
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHHCC--ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEe---CCcEEE
Confidence            458999999999999999999999875  4444443322222567899999999999999999 9999877   999999


Q ss_pred             eccCCCCCCCC
Q 017670          282 GSIGTPCFTGK  292 (368)
Q Consensus       282 ~S~g~~~~p~k  292 (368)
                      .....+.....
T Consensus        88 V~~a~~~~~~~   98 (104)
T 1wi8_A           88 VDVADQAQDKD   98 (104)
T ss_dssp             EEECCCCCCCC
T ss_pred             EEEccCCCCCC
Confidence            88877665544

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.85  E-value=1e-08  Score=79.29  Aligned_cols=82  Identities=16%  Similarity=0.057  Sum_probs=66.7

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ...+.|||.||.+.+|.+||+++|...+... .++++    .+..+.|.|||.|.+.++|+.||..||...|   +||+|
T Consensus        20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~-~~~i~----~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l   91 (109)
T 1x4a_A           20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIR-DIDLK----NRRGGPPFAFVEFEDPRDAEDAVYGRDGYDY---DGYRL   91 (109)
T ss_dssp             CCSSEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEC----CSSSSSCCEEEEESCHHHHHHHHHHHTTCEE---TTEEC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEE----ECCCCCcEEEEEECCHHHHHHHHHHcCCCEE---CCeEE
Confidence            4568999999999999999999999866542 23332    2345689999999999999999999999877   99999


Q ss_pred             eeccCCCCCC
Q 017670          281 LGSIGTPCFT  290 (368)
Q Consensus       281 ~~S~g~~~~p  290 (368)
                      ......+..+
T Consensus        92 ~V~~a~~~~~  101 (109)
T 1x4a_A           92 RVEFPRSGRG  101 (109)
T ss_dssp             EEECCCCCCC
T ss_pred             EEEEcccCCC
Confidence            9887765443

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=5.3e-09  Score=79.69  Aligned_cols=81  Identities=20%  Similarity=0.170  Sum_probs=66.6

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ...+.|||.||.+.+|.+||+++|.+.+..    +++ .. ....+.|.|||.|.+.++|+.||..||...|   +||+|
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v----~~~-~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l   83 (101)
T 2fc9_A           13 GESKTLVLSNLSYSATEETLQEVFEKATFI----KVP-QN-QNGKSKGYAFIEFASFEDAKEALNSCNKREI---EGRAI   83 (101)
T ss_dssp             CCCSEEEEESCCTTCCHHHHHHHCSSCSEE----ECC-BC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEE---TTEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE----EEE-EC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEe---CCeEE
Confidence            357899999999999999999998875432    332 22 4457789999999999999999999999877   89999


Q ss_pred             eeccCCCCCC
Q 017670          281 LGSIGTPCFT  290 (368)
Q Consensus       281 ~~S~g~~~~p  290 (368)
                      ......+...
T Consensus        84 ~v~~a~~~~~   93 (101)
T 2fc9_A           84 RLELQGPRGS   93 (101)
T ss_dssp             EEEECSSCCC
T ss_pred             EEEEcCCCCC
Confidence            9888766543

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=98.84  E-value=6.5e-09  Score=79.19  Aligned_cols=85  Identities=22%  Similarity=0.153  Sum_probs=69.2

Q ss_pred             hHHHHHHHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccce
Q 017670          192 WEERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGC  271 (368)
Q Consensus       192 WEe~lr~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~c  271 (368)
                      .++.++.+...++.|||.||.+.+|.+||+++|...+.. ..++++       ++.|.|||.|.+.++|+.||..||+..
T Consensus        16 ~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i-~~~~~~-------~~~g~afV~f~~~~~A~~Ai~~l~g~~   87 (101)
T 2la4_A           16 VDHIIRSAPPRVTTAYIGNIPHFATEADLIPLFQNFGFI-LDFKHY-------PEKGCCFIKYDTHEQAAVCIVALANFP   87 (101)
T ss_dssp             HHHHHTTSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCC-SEEEEE-------TTTTEEEEECSSHHHHHHHHHHHTTCE
T ss_pred             hhhhhhcCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCE-EEEEEe-------cCCCEEEEEECCHHHHHHHHHHhCCCe
Confidence            345555556668999999999999999999999876543 344444       567999999999999999999999987


Q ss_pred             eeecCCceeeeccCCC
Q 017670          272 LLLSNGRPLLGSIGTP  287 (368)
Q Consensus       272 L~ls~GRPL~~S~g~~  287 (368)
                      |   +||+|....+.+
T Consensus        88 ~---~g~~l~V~~a~~  100 (101)
T 2la4_A           88 F---QGRNLRTGWGKE  100 (101)
T ss_dssp             E---TTEECCCCBCCC
T ss_pred             E---CCeEEEEEeccC
Confidence            7   899998776543

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=98.84  E-value=6.8e-09  Score=77.41  Aligned_cols=83  Identities=19%  Similarity=0.115  Sum_probs=67.6

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ..++.|||.||.+.+|.+||+++|...+.. ..++++.   -...+.|.|||.|.+.++|+.||..||+..+   +||+|
T Consensus         6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v-~~~~i~~---~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~---~g~~l   78 (92)
T 2dgv_A            6 SGACQIFVRNLPFDFTWKMLKDKFNECGHV-LYADIKM---ENGKSKGCGVVKFESPEVAERACRMMNGMKL---SGREI   78 (92)
T ss_dssp             SSCCEEEECSCCTTCCHHHHHHHHHTTSCE-EEEEEEE---SSSCEEEEEEEEESSHHHHHHHHHHHTTCCB---TTBCC
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEEc---cCCCcceEEEEEECCHHHHHHHHHHhCCCEE---CCcEE
Confidence            467899999999999999999999986543 3344443   1346779999999999999999999999887   99999


Q ss_pred             eeccCCCCCC
Q 017670          281 LGSIGTPCFT  290 (368)
Q Consensus       281 ~~S~g~~~~p  290 (368)
                      ......+..+
T Consensus        79 ~v~~a~~~~~   88 (92)
T 2dgv_A           79 DVRIDRNASG   88 (92)
T ss_dssp             CCEECSCCSS
T ss_pred             EEEEcCCCCC
Confidence            9877765443

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.84  E-value=2.8e-09  Score=81.48  Aligned_cols=88  Identities=14%  Similarity=0.089  Sum_probs=70.2

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ..++.|||.||.+.+|.+||+++|...+.. ..+++ +....+..+.|.|||.|.+.++|..||..||+..|   +||+|
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i-~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l   87 (103)
T 2cq0_A           13 DDNATIRVTNLSEDTRETDLQELFRPFGSI-SRIYL-AKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGY---DHLIL   87 (103)
T ss_dssp             SSSEEEEEESCCTTCCHHHHHTTSTTTCCE-EEEEE-EECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEE---TTEEC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCCCe-EEEEE-eecCCCCceeeEEEEEECCHHHHHHHHHHcCCCee---CCcEE
Confidence            457899999999999999999999876543 22333 23333456778999999999999999999999887   99999


Q ss_pred             eeccCCCCCCCCC
Q 017670          281 LGSIGTPCFTGKQ  293 (368)
Q Consensus       281 ~~S~g~~~~p~k~  293 (368)
                      ......+..+..+
T Consensus        88 ~v~~a~~~~~~~~  100 (103)
T 2cq0_A           88 NVEWAKPSTNSGP  100 (103)
T ss_dssp             EEEESSCCCCSCC
T ss_pred             EEEECCCCCCCCC
Confidence            9888877655543

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=8.4e-09  Score=78.07  Aligned_cols=84  Identities=18%  Similarity=0.155  Sum_probs=67.8

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce-
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP-  279 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP-  279 (368)
                      ...+.|||.||.+.+|.+||+++|...+.....++++.. .....+.|.|||.|.+.++|+.||..||+..|   +||+ 
T Consensus         7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~~   82 (99)
T 2div_A            7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRN-RLTGIPAGYCFVEFADLATAEKCLHKINGKPL---PGATP   82 (99)
T ss_dssp             SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEEC-SSSCCEEEEEEEECSCHHHHHHHHHTTTTSEE---SSCSS
T ss_pred             CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeec-CCCCCcCCEEEEEeCCHHHHHHHHHHHcCCcc---CCCCc
Confidence            457899999999999999999999987765435554432 23456679999999999999999999999887   9999 


Q ss_pred             ---eeeccCCCC
Q 017670          280 ---LLGSIGTPC  288 (368)
Q Consensus       280 ---L~~S~g~~~  288 (368)
                         |....+.+.
T Consensus        83 ~~~l~v~~a~~~   94 (99)
T 2div_A           83 AKRFKLNYATYS   94 (99)
T ss_dssp             CEECCEEETTCC
T ss_pred             ceeEEEeecCCC
Confidence               776665543

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.83  E-value=5.2e-09  Score=78.22  Aligned_cols=80  Identities=14%  Similarity=0.035  Sum_probs=64.3

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ..++.|||.||.+.+|.+||+++|...+.. ...+++ .......+.|.|||.|.+.++|+.||..||+..|   +||+|
T Consensus        13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v-~~v~i~-~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l   87 (95)
T 2cqc_A           13 DPNCCLGVFGLSLYTTERDLREVFSKYGPI-ADVSIV-YDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL---DGRRI   87 (95)
T ss_dssp             CGGGCEEEESCCSSCCHHHHHHHHHTTSCE-EEEEEE-ECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE---TTEEE
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhcCCe-eEEEEE-EcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE---CCEEE
Confidence            457899999999999999999999886543 233332 2233356778999999999999999999999877   99999


Q ss_pred             eeccC
Q 017670          281 LGSIG  285 (368)
Q Consensus       281 ~~S~g  285 (368)
                      .....
T Consensus        88 ~v~~a   92 (95)
T 2cqc_A           88 RVSGP   92 (95)
T ss_dssp             EEECC
T ss_pred             EEEec
Confidence            86654

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=98.83  E-value=6.8e-09  Score=79.35  Aligned_cols=86  Identities=12%  Similarity=0.015  Sum_probs=69.2

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCC---
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG---  277 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G---  277 (368)
                      +.++.|||.||.+.+|.+||+++|...+. -...+++...  +..+.|.|||.|.+.++|+.||..||...+   +|   
T Consensus        13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~-i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~gg~~   86 (105)
T 2dnh_A           13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGV-IDECTVLRGP--DGSSKGCAFVKFSSHTEAQAAIHALHGSQT---MPGAS   86 (105)
T ss_dssp             CCCCEEEEESCCTTCCHHHHHHHHTTTSC-EEEEEEEECS--SSCEEEEEEEEESSHHHHHHHHHHHSSCCC---CTTCS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEEECC--CCCcCcEEEEEeCCHHHHHHHHHHHcCCcc---CCCCC
Confidence            45899999999999999999999987654 3344444332  456679999999999999999999999877   55   


Q ss_pred             ceeeeccCCCCCCCC
Q 017670          278 RPLLGSIGTPCFTGK  292 (368)
Q Consensus       278 RPL~~S~g~~~~p~k  292 (368)
                      |||....+.+.....
T Consensus        87 ~~l~V~~a~~~~~~~  101 (105)
T 2dnh_A           87 SSLVVKFADTDKESG  101 (105)
T ss_dssp             SCCEEEESCSSCCCS
T ss_pred             ccEEEEECccCcccC
Confidence            999988877655544

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=98.83  E-value=1.1e-08  Score=81.48  Aligned_cols=83  Identities=12%  Similarity=0.133  Sum_probs=68.9

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      +..+.|||.||.+.+|.+||+++|...+. -..++++...  +..+.|.|||.|.+.++|+.||..||+..|   +||+|
T Consensus         5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~v~i~~~~--~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~---~g~~l   78 (116)
T 2fy1_A            5 DHPGKLFIGGLNRETNEKMLKAVFGKHGP-ISEVLLIKDR--TSKSRGFAFITFENPADAKNAAKDMNGKSL---HGKAI   78 (116)
T ss_dssp             CSCCEEEEECCTTTCCHHHHHHHHHTSSC-CSEEEEECST--TTTCCCEEEEECSSHHHHHHHHHHCSSCBC---SSSBC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEEECC--CCCcccEEEEEECCHHHHHHHHHHhCCCEE---CCEEE
Confidence            45789999999999999999999987654 3445554443  567889999999999999999999999887   99999


Q ss_pred             eeccCCCCC
Q 017670          281 LGSIGTPCF  289 (368)
Q Consensus       281 ~~S~g~~~~  289 (368)
                      ....+.+..
T Consensus        79 ~V~~a~~~~   87 (116)
T 2fy1_A           79 KVEQAKKPS   87 (116)
T ss_dssp             EEEECCCSS
T ss_pred             EEEECCCCC
Confidence            987775443

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=1.3e-08  Score=77.33  Aligned_cols=86  Identities=12%  Similarity=0.066  Sum_probs=68.8

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ...+.|||.||.+.+|.+||+++|...+. -..++++ .......+.|.|||.|.+.++|+.||. ||...|   +||+|
T Consensus         8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~v~i~-~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~---~g~~l   81 (99)
T 2dgs_A            8 SKSNKIFVGGIPHNCGETELREYFKKFGV-VTEVVMI-YDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDI---MGKKV   81 (99)
T ss_dssp             SSCCEEEEESCCSSCCHHHHHHHHSSSSC-EEEEEEC-CCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBS---SSCBC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEE-eCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEE---CCeEE
Confidence            45689999999999999999999988543 3344443 333346778999999999999999998 988877   99999


Q ss_pred             eeccCCCCCCCC
Q 017670          281 LGSIGTPCFTGK  292 (368)
Q Consensus       281 ~~S~g~~~~p~k  292 (368)
                      ......+.....
T Consensus        82 ~V~~a~~~~~~~   93 (99)
T 2dgs_A           82 EVKRAEPRDSKS   93 (99)
T ss_dssp             EEEECCCCCCCC
T ss_pred             EEEECCCCcccC
Confidence            988887665544

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=98.82  E-value=4.4e-09  Score=82.61  Aligned_cols=80  Identities=14%  Similarity=0.150  Sum_probs=64.4

Q ss_pred             cEEEEecCCCCCCchHHHHHHHHHhhc-cceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccce--eeecCCcee
Q 017670          204 TLVVLENLDPSYTSTVVEDLVWHAFKE-NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGC--LLLSNGRPL  280 (368)
Q Consensus       204 tlV~LqNLDps~ts~dVedLi~~a~ke-~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~c--L~ls~GRPL  280 (368)
                      ..|||.||.|..|.++|+++|..-+.. .+..+++ +...+..+-|.|||-|.+.++|..||..||+.-  +.+ +||||
T Consensus        10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~-~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i-~Gr~i   87 (95)
T 2lkz_A           10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLI-KDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKI-DGKTI   87 (95)
T ss_dssp             CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECC-CCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEE-TTEEE
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEE-ecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceE-CCEEE
Confidence            469999999999999999999987763 4555544 344456778999999999999999999999863  222 99999


Q ss_pred             eeccC
Q 017670          281 LGSIG  285 (368)
Q Consensus       281 ~~S~g  285 (368)
                      ..+.+
T Consensus        88 ~V~~A   92 (95)
T 2lkz_A           88 GVDFA   92 (95)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            87654

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.82  E-value=1.3e-08  Score=77.70  Aligned_cols=85  Identities=15%  Similarity=0.112  Sum_probs=68.7

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ...+.|||.||.+.+|.+||+++|...+.. ..++++...   ..+.|.|||.|.+.++|+.||..||+..|   +||+|
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v-~~v~i~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l   85 (103)
T 2cq3_A           13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKI-LDVEIIFNE---RGSKGFGFVTFENSADADRAREKLHGTVV---EGRKI   85 (103)
T ss_dssp             CCCCEEEEESCCTTCCHHHHHHHGGGTSCE-EEEEEECCT---TTTCCEEEEEESCHHHHHHHHHHHTTCEE---TTEEC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEecC---CCCcEEEEEEECCHHHHHHHHHHhCCCEE---CCEEE
Confidence            456899999999999999999999875543 234444322   23689999999999999999999999987   99999


Q ss_pred             eeccCCCCCCCC
Q 017670          281 LGSIGTPCFTGK  292 (368)
Q Consensus       281 ~~S~g~~~~p~k  292 (368)
                      ....+.+..+..
T Consensus        86 ~v~~a~~~~~~~   97 (103)
T 2cq3_A           86 EVNNATARVMTN   97 (103)
T ss_dssp             EEEECCSSCCCC
T ss_pred             EEEEcccCCCCC
Confidence            988887665544

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.82  E-value=6.2e-09  Score=77.91  Aligned_cols=79  Identities=19%  Similarity=0.170  Sum_probs=63.7

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ..++.|||.||.+.+|.+||+++|...+.. ...++ +.......+.|.|||.|.+.++|+.||..||+..|   +||+|
T Consensus        14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v-~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l   88 (94)
T 2e5h_A           14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKV-VKVTI-MKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL---FGRVI   88 (94)
T ss_dssp             CCTTSEEEESCCTTSCHHHHHHHTTTTSCE-EEEEE-CCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEE---TTEEE
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhcCCe-EEEEE-EeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCee---CCcEE
Confidence            356889999999999999999999876543 23333 33333457789999999999999999999999877   89999


Q ss_pred             eecc
Q 017670          281 LGSI  284 (368)
Q Consensus       281 ~~S~  284 (368)
                      ....
T Consensus        89 ~v~~   92 (94)
T 2e5h_A           89 KASI   92 (94)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8654

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.82  E-value=1.1e-08  Score=77.04  Aligned_cols=79  Identities=14%  Similarity=0.060  Sum_probs=65.0

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      .++.|||.||.+.+|.+||+++|...+... .++.|    ..++.+|.|||.|.+.++|..||..||+.-|   +||+|.
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~-~~~~i----~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~---~g~~l~   85 (96)
T 2e44_A           14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVE-SCEQV----NTDSETAVVNVTYSSKDQARQALDKLNGFQL---ENFTLK   85 (96)
T ss_dssp             SCCCEEEEEECSSSCHHHHHHHHHHHSCEE-EEEEE----CCSSSSEEEEEEESSHHHHHHHHHHHTTCBC---SSCBCE
T ss_pred             CCCEEEEEcCCCCCCHHHHHHHHHhcCCeE-EEEEe----ecCCCCCEEEEEECCHHHHHHHHHHhCCCEE---CCcEEE
Confidence            568899999999999999999999876532 22212    2246678899999999999999999999877   999999


Q ss_pred             eccCCCC
Q 017670          282 GSIGTPC  288 (368)
Q Consensus       282 ~S~g~~~  288 (368)
                      ...+.+.
T Consensus        86 V~~a~~~   92 (96)
T 2e44_A           86 VAYIPDE   92 (96)
T ss_dssp             EEECCCC
T ss_pred             EEEcCcc
Confidence            8877665

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.81  E-value=7.1e-09  Score=80.31  Aligned_cols=85  Identities=16%  Similarity=0.137  Sum_probs=68.5

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ..++.|||.||.+.+|.+||+++|...+.. ..++++...  +..+.|.|||.|.+.++|+.||..||+..|   +||+|
T Consensus        13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i-~~~~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l   86 (114)
T 2do0_A           13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVV-VRADILEDK--DGKSRGIGTVTFEQSIEAVQAISMFNGQLL---FDRPM   86 (114)
T ss_dssp             CCCSCEEEESCCTTCCHHHHHHHHTTTSCE-EEEEEEECT--TCSEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEECC--CCCeeeEEEEEECCHHHHHHHHHHhCCCEe---CCCEE
Confidence            457899999999999999999999876543 334444332  356678999999999999999999999987   99999


Q ss_pred             eeccCCCCCCC
Q 017670          281 LGSIGTPCFTG  291 (368)
Q Consensus       281 ~~S~g~~~~p~  291 (368)
                      .........|.
T Consensus        87 ~v~~a~~~~~~   97 (114)
T 2do0_A           87 HVKMDERALPK   97 (114)
T ss_dssp             EEEECSCCCCC
T ss_pred             EEEEcccCCCC
Confidence            98876654444

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=1.7e-08  Score=75.64  Aligned_cols=79  Identities=13%  Similarity=0.129  Sum_probs=66.2

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ..++.|||.||.+.+|.+||+++|...+. -..++++         .|.|||.|.+.++|+.||..||+..|   +||+|
T Consensus         7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-v~~~~~~---------~~~afV~f~~~~~a~~A~~~l~g~~~---~g~~l   73 (90)
T 2dnp_A            7 GNTWKIFVGNVSAACTSQELRSLFERRGR-VIECDVV---------KDYAFVHMEKEADAKAAIAQLNGKEV---KGKRI   73 (90)
T ss_dssp             CCSCCEEEESCCTTCCHHHHHHHHHHHSC-EEEEEEC---------SSCEEEEESCHHHHHHHHHHHTTCEE---TTEEC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHcCCC-EEEEEEE---------CCEEEEEECCHHHHHHHHHHhCCCEE---CCcEE
Confidence            45788999999999999999999998665 3344443         45899999999999999999999877   99999


Q ss_pred             eeccCCCCCCCC
Q 017670          281 LGSIGTPCFTGK  292 (368)
Q Consensus       281 ~~S~g~~~~p~k  292 (368)
                      ......+..+..
T Consensus        74 ~v~~a~~~~~~~   85 (90)
T 2dnp_A           74 NVELSTKGQKKS   85 (90)
T ss_dssp             EEEESCCCCCCC
T ss_pred             EEEECCCCCCCC
Confidence            998887765444

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.81  E-value=1.3e-08  Score=79.20  Aligned_cols=80  Identities=21%  Similarity=0.206  Sum_probs=67.3

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCC----
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG----  277 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G----  277 (368)
                      .++.|||.||.+.+|.+||+++|...+. -..++++..        |.|||.|.+.++|..||..||...|   +|    
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~~~i~~~--------g~afV~f~~~~~a~~Ai~~l~g~~~---~g~~~~   81 (108)
T 1x4c_A           14 SENRVVVSGLPPSGSWQDLKDHMREAGD-VCYADVYRD--------GTGVVEFVRKEDMTYAVRKLDNTKF---RSHEGE   81 (108)
T ss_dssp             CCCEEEEESCCSSCCHHHHHHHHGGGSC-EEEEEEETT--------TEEEEEESSHHHHHHHHHHSSSEEE---ECTTSC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCC-EeEEEEecC--------CEEEEEECCHHHHHHHHHHHCcCCc---cCCcCc
Confidence            5789999999999999999999987653 444544332        9999999999999999999999988   88    


Q ss_pred             -ceeeeccCCCCCCCCC
Q 017670          278 -RPLLGSIGTPCFTGKQ  293 (368)
Q Consensus       278 -RPL~~S~g~~~~p~k~  293 (368)
                       |+|....+.+..+...
T Consensus        82 ~~~i~V~~a~~~~~~~~   98 (108)
T 1x4c_A           82 TAYIRVKVDGPRSPSYG   98 (108)
T ss_dssp             EEEEEEEESSCCSCCCC
T ss_pred             ceEEEEEeCCCCCCCCC
Confidence             9999888887666553

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=98.81  E-value=6.5e-09  Score=78.20  Aligned_cols=81  Identities=15%  Similarity=0.162  Sum_probs=63.0

Q ss_pred             HhcccEEEEecCCCCCCchHHHHHHHHHhhccc---eecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecC
Q 017670          200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENC---SAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN  276 (368)
Q Consensus       200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c---~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~  276 (368)
                      ...++.|||.||.+.+|.+||++.+++.|..--   ..+++    .+..+.|.|||.|.+.++|..|+..||+..+   +
T Consensus         5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~----~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~   77 (97)
T 1nu4_A            5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVS----RSLKMRGQAFVIFKEVSSATNALRSMQGFPF---Y   77 (97)
T ss_dssp             -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECC----HHHHHTTCEEEEESSHHHHHHHHHHHTTCEE---T
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEE----cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEE---C
Confidence            456899999999999999999955555554322   22222    1345669999999999999999999999887   9


Q ss_pred             CceeeeccCCC
Q 017670          277 GRPLLGSIGTP  287 (368)
Q Consensus       277 GRPL~~S~g~~  287 (368)
                      ||+|..+.+.+
T Consensus        78 g~~l~v~~a~~   88 (97)
T 1nu4_A           78 DKPMRIQYAKT   88 (97)
T ss_dssp             TEECEEEECSS
T ss_pred             CcEEEEEEccC
Confidence            99999877655

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=98.80  E-value=6.5e-09  Score=77.44  Aligned_cols=82  Identities=22%  Similarity=0.136  Sum_probs=63.7

Q ss_pred             cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeec
Q 017670          204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS  283 (368)
Q Consensus       204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S  283 (368)
                      |.|||.||.+.+|.+||+++|...+.. ..++++ ....+..+.|.|||.|.+.+ |..|+..||+..+   +||+|...
T Consensus         2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~-~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~---~g~~l~V~   75 (90)
T 2ki2_A            2 RNIYVGNLVYSATSEQVKELFSQFGKV-FNVKLI-YDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDF---MGRTIRVT   75 (90)
T ss_dssp             EEEEEEEECTTSSHHHHTTTHHHHTCC-SEEEEC-CCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCC---SSSSCSEE
T ss_pred             cEEEECCCCCCCCHHHHHHHHHhcCCE-EEEEEE-EcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEE---CCeEEEEE
Confidence            579999999999999999999986653 233333 33344677899999999999 9999999999988   99999988


Q ss_pred             cCCCCCCC
Q 017670          284 IGTPCFTG  291 (368)
Q Consensus       284 ~g~~~~p~  291 (368)
                      .+.+..+.
T Consensus        76 ~a~~~~~~   83 (90)
T 2ki2_A           76 EANPKKSL   83 (90)
T ss_dssp             EC------
T ss_pred             EcCCCCCC
Confidence            87665443

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=98.80  E-value=1.1e-08  Score=80.44  Aligned_cols=89  Identities=16%  Similarity=0.144  Sum_probs=71.2

Q ss_pred             HHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCC
Q 017670          198 VAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG  277 (368)
Q Consensus       198 ~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G  277 (368)
                      .....++.|||.||.+.+|.+||+++|...+.. ..++++ ....+..+.|.|||.|.+.++|+.|| .||+..|   +|
T Consensus        31 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~-~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~---~g  104 (124)
T 2jwn_A           31 KKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSI-NRITIL-CDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVF---RG  104 (124)
T ss_dssp             HHHHHHTEEEEEEECTTCCHHHHHHHHHTTSCE-EEEEEE-EECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEE---TT
T ss_pred             cccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEE-ecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeE---CC
Confidence            345678999999999999999999999986543 233333 23345677899999999999999999 8999887   99


Q ss_pred             ceeeeccCCCCCCCC
Q 017670          278 RPLLGSIGTPCFTGK  292 (368)
Q Consensus       278 RPL~~S~g~~~~p~k  292 (368)
                      |+|......+..|+.
T Consensus       105 ~~l~V~~a~~~~~~~  119 (124)
T 2jwn_A          105 RTIKVLPKRTNMPGI  119 (124)
T ss_dssp             EECEEEESSCCCSSC
T ss_pred             eEEEEEECCCCCCCC
Confidence            999988877665554

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.80  E-value=9.2e-09  Score=77.30  Aligned_cols=80  Identities=15%  Similarity=0.066  Sum_probs=65.5

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhh-ccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhcc-ceeeecCCc
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFK-ENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEE-GCLLLSNGR  278 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~k-e~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~-~cL~ls~GR  278 (368)
                      ...+.|||.||.+.+|.+||+++|.+.+. .... .+        ++.|.|||.|.+.++|+.||..||+ .-|   +||
T Consensus         6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~-~~--------~~~g~afV~f~~~~~A~~A~~~l~g~~~~---~g~   73 (93)
T 2cqh_A            6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQ-VL--------LKSGYAFVDYPDQNWAIRAIETLSGKVEL---HGK   73 (93)
T ss_dssp             CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSC-EE--------EETTEEEECCSCHHHHHHHHHHHTTTCEE---TTE
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEE-EE--------cCCCEEEEEECCHHHHHHHHHHccCCeeE---CCE
Confidence            35688999999999999999999999776 2221 11        2478999999999999999999999 766   999


Q ss_pred             eeeeccCCCCCCCC
Q 017670          279 PLLGSIGTPCFTGK  292 (368)
Q Consensus       279 PL~~S~g~~~~p~k  292 (368)
                      +|....+.+.....
T Consensus        74 ~l~v~~a~~~~~~~   87 (93)
T 2cqh_A           74 IMEVDYSVSKKLRS   87 (93)
T ss_dssp             ECEEEECCCCCCCC
T ss_pred             EEEEEEccCccccC
Confidence            99988887654443

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=98.80  E-value=5.5e-09  Score=80.37  Aligned_cols=84  Identities=12%  Similarity=0.116  Sum_probs=64.8

Q ss_pred             HHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCC
Q 017670          198 VAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG  277 (368)
Q Consensus       198 ~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G  277 (368)
                      .....++.|||.||.+.+|.+||+++|...+  -..++|+.....+..+.|.|||.|.+.++|..|| .||+..|   +|
T Consensus        14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~---~g   87 (100)
T 2j76_E           14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL---GN   87 (100)
T ss_dssp             ------CEEEESCCSSCCSSSHHHHHSCSSC--EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCB---TT
T ss_pred             CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEE---CC
Confidence            4467889999999999999999999998866  4455554433245678899999999999999999 9999877   99


Q ss_pred             ceeeeccCCC
Q 017670          278 RPLLGSIGTP  287 (368)
Q Consensus       278 RPL~~S~g~~  287 (368)
                      |+|....+.+
T Consensus        88 ~~l~V~~a~~   97 (100)
T 2j76_E           88 RRIRVDVADQ   97 (100)
T ss_dssp             BCCCCEECCC
T ss_pred             eEEEEEeccC
Confidence            9998665543

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=98.79  E-value=8.1e-09  Score=80.34  Aligned_cols=82  Identities=15%  Similarity=0.048  Sum_probs=67.4

Q ss_pred             HHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCc
Q 017670          199 AHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR  278 (368)
Q Consensus       199 A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GR  278 (368)
                      .-+.++.|||.||.+.+|.+||.++|...+.. ...+++    .+....|.|||.|.+.++|..||..||+..+   +||
T Consensus         4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v-~~v~i~----~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~   75 (115)
T 3lqv_A            4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPI-RQIRVG----NTPETRGTAYVVYEDIFDAKNAVDHLSGFNV---SNR   75 (115)
T ss_dssp             CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCE-EEEEEE----CSTTTTTCEEEEESSHHHHHHHHHHHTTCBS---SSC
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEe----eCCCCCcEEEEEECCHHHHHHHHHHcCCCEE---CCe
Confidence            34568999999999999999999999876544 334443    3445589999999999999999999999877   999


Q ss_pred             eeeeccCCCC
Q 017670          279 PLLGSIGTPC  288 (368)
Q Consensus       279 PL~~S~g~~~  288 (368)
                      +|......+.
T Consensus        76 ~l~v~~a~~~   85 (115)
T 3lqv_A           76 YLVVLYYNAN   85 (115)
T ss_dssp             BCEEEECCHH
T ss_pred             EEEEEEecCC
Confidence            9998776543

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.78  E-value=3e-08  Score=75.71  Aligned_cols=81  Identities=17%  Similarity=0.121  Sum_probs=63.0

Q ss_pred             HhcccEEEEecCCCCCCchHHH----HHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeec
Q 017670          200 HEHGTLVVLENLDPSYTSTVVE----DLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLS  275 (368)
Q Consensus       200 ~E~GtlV~LqNLDps~ts~dVe----dLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls  275 (368)
                      ...++.|||.||.+.+|.+||+    ++|...+. -..++++....   . -|.|||.|.+.++|..||..||..-|   
T Consensus         6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~-v~~v~i~~~~~---~-rg~afV~f~~~~~A~~Ai~~l~g~~~---   77 (96)
T 2dgx_A            6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGK-VKSVELSPHTD---Y-QLKAVVQMENLQDAIGAVNSLHRYKI---   77 (96)
T ss_dssp             CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSC-EEEEEECSCCS---T-TCCEEEEESSHHHHHHHHHHHTTEEE---
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCc-EEEEEEEeCCC---C-CeEEEEEECCHHHHHHHHHHhCCCEE---
Confidence            3468899999999999999999    66655443 23344332211   1 67899999999999999999999877   


Q ss_pred             CCceeeeccCCCC
Q 017670          276 NGRPLLGSIGTPC  288 (368)
Q Consensus       276 ~GRPL~~S~g~~~  288 (368)
                      +||+|..+.+.+.
T Consensus        78 ~gr~l~V~~a~~~   90 (96)
T 2dgx_A           78 GSKKILVSLATGA   90 (96)
T ss_dssp             TTEEEEEEECCCS
T ss_pred             CCeEEEEEEcCCC
Confidence            9999998887654

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.78  E-value=1.1e-08  Score=80.12  Aligned_cols=84  Identities=17%  Similarity=0.184  Sum_probs=67.6

Q ss_pred             cccEEEEecCCCCCCchHHH---HHHHHHhhccceecccCCccc--CCCCCceEEEEEechHHHHHHHHhhccceeeecC
Q 017670          202 HGTLVVLENLDPSYTSTVVE---DLVWHAFKENCSAKMIPRVAF--ASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN  276 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVe---dLi~~a~ke~c~AkmI~~~~y--s~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~  276 (368)
                      +.+.|||.||.+.+|.+||.   ++|.+.+.. ..++++....+  +..+.|.|||.|.+.++|+.||..||...|   +
T Consensus        14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i-~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~---~   89 (111)
T 2cpi_A           14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKI-HKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV---D   89 (111)
T ss_dssp             CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCE-EEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE---T
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhhccCCE-EEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE---C
Confidence            46789999999999999999   888775543 33444444333  336679999999999999999999999988   9


Q ss_pred             CceeeeccCCCCC
Q 017670          277 GRPLLGSIGTPCF  289 (368)
Q Consensus       277 GRPL~~S~g~~~~  289 (368)
                      ||+|....+.+..
T Consensus        90 gr~l~V~~a~~k~  102 (111)
T 2cpi_A           90 GRTLKASLGTTKY  102 (111)
T ss_dssp             TEEEEEESCCCCS
T ss_pred             CEEEEEEeccccc
Confidence            9999988876654

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=8.5e-09  Score=77.18  Aligned_cols=79  Identities=14%  Similarity=0.094  Sum_probs=64.8

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ..++.|||.||.+..|.+||+++|...  .-..++++..  -+..+.|.|||.|.+.++|..||. ||...|   +||+|
T Consensus         8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~--~i~~v~i~~~--~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~---~gr~i   79 (91)
T 2dgw_A            8 TTCHTVKLRGAPFNVTEKNVMEFLAPL--KPVAIRIVRN--AHGNKTGYIFVDFSNEEEVKQALK-CNREYM---GGRYI   79 (91)
T ss_dssp             CCCCEEEEECCCSSCCHHHHHHHHTTS--CCSEEEEEEC--TTSCEEEEEEEECSSHHHHHHHHH-SCSEEE---TTEEE
T ss_pred             CCccEEEEECCCCCCCHHHHHHHHhhC--CceEEEEEEC--CCCCCceEEEEEECCHHHHHHHHH-hCCcee---CCcEE
Confidence            467899999999999999999999876  3444544433  345778999999999999999999 999877   99999


Q ss_pred             eeccCCC
Q 017670          281 LGSIGTP  287 (368)
Q Consensus       281 ~~S~g~~  287 (368)
                      ......+
T Consensus        80 ~v~~a~~   86 (91)
T 2dgw_A           80 EVFREKS   86 (91)
T ss_dssp             EEEEESS
T ss_pred             EEEECCc
Confidence            8766544

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A

Probab=98.78  E-value=2.6e-08  Score=73.32  Aligned_cols=72  Identities=10%  Similarity=0.092  Sum_probs=59.2

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHh---h-------ccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccc
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAF---K-------ENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEG  270 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~---k-------e~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~  270 (368)
                      ...+.|||.||++..|.+||+++|.+.+   .       .-...++.       +.-|.|||.|.+.++|..|| .||..
T Consensus         4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~-------~~kg~afV~f~~~~~a~~A~-~l~g~   75 (87)
T 2hzc_A            4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-------QDKNFAFLEFRSVDETTQAM-AFDGI   75 (87)
T ss_dssp             GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC-------SSSSEEEEEESSHHHHHHHG-GGTTC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec-------CCCcEEEEEcCCHHHHHHHH-hcCCC
Confidence            4678999999999999999999999974   3       22233322       23799999999999999999 99998


Q ss_pred             eeeecCCceeeec
Q 017670          271 CLLLSNGRPLLGS  283 (368)
Q Consensus       271 cL~ls~GRPL~~S  283 (368)
                      -|   +||+|..+
T Consensus        76 ~~---~g~~l~V~   85 (87)
T 2hzc_A           76 IF---QGQSLKIR   85 (87)
T ss_dssp             EE---TTEECEEE
T ss_pred             EE---CCeEEEEe
Confidence            77   99998754

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}

Probab=98.78  E-value=1.8e-08  Score=86.52  Aligned_cols=83  Identities=19%  Similarity=0.151  Sum_probs=68.7

Q ss_pred             HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      .+.++.|||.||.+.+|.+||+++|.+.+.. ..++++...  +..+.|.|||.|.+.++|..||..||+..|   +||+
T Consensus        85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I-~~v~i~~d~--~g~~kG~afV~F~~~~~A~~Ai~~lng~~l---~Gr~  158 (177)
T 2f3j_A           85 VETGAKLLVSNLDFGVSDADIQELFAEFGTL-KKAAVDYDR--SGRSLGTADVHFERRADALKAMKQYKGVPL---DGRP  158 (177)
T ss_dssp             CTTCEEEEEECCCSCCCHHHHHHHHHHTSCC-SEEEECCCT--TSSCSCCEEEEESCHHHHHHHHHHSTTCBC---SSSB
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEECC--CCCEeeEEEEEeCCHHHHHHHHHHhCCCEE---CCEE
Confidence            4678999999999999999999999986543 444444332  567789999999999999999999999877   9999


Q ss_pred             eeeccCCCC
Q 017670          280 LLGSIGTPC  288 (368)
Q Consensus       280 L~~S~g~~~  288 (368)
                      |....+.+.
T Consensus       159 l~V~~a~~~  167 (177)
T 2f3j_A          159 MDIQLVASQ  167 (177)
T ss_dssp             CEEEEESSG
T ss_pred             EEEEEecCC
Confidence            997776543

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=6.7e-09  Score=79.02  Aligned_cols=84  Identities=17%  Similarity=0.216  Sum_probs=66.8

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ...+.|||.||.+.+|.+||+++|...    ...+++. ...+..+.|.|||.|.+.++|+.||..||...|   +||+|
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----~~~~~~~-~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l   84 (102)
T 2fc8_A           13 QPSKTLFVKGLSEDTTEETLKESFDGS----VRARIVT-DRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI---DGNKV   84 (102)
T ss_dssp             CCCSSEEEECCCTTCCHHHHHHTSTTC----SEEEEEE-CSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred             CCCCEEEEeCCCCccCHHHHHHHhcCC----eEEEEEe-cCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeE---CCeEE
Confidence            457889999999999999999998843    2333332 223356679999999999999999999999877   99999


Q ss_pred             eeccCCCCCCCC
Q 017670          281 LGSIGTPCFTGK  292 (368)
Q Consensus       281 ~~S~g~~~~p~k  292 (368)
                      ....+.+.....
T Consensus        85 ~V~~a~~~~~~~   96 (102)
T 2fc8_A           85 TLDWAKPKGEGG   96 (102)
T ss_dssp             EEEECCCCCSSS
T ss_pred             EEEEecCCCCCC
Confidence            988887665443

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=98.77  E-value=1.1e-08  Score=75.59  Aligned_cols=73  Identities=12%  Similarity=0.043  Sum_probs=59.2

Q ss_pred             ccEEEEecCCCCC------CchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecC
Q 017670          203 GTLVVLENLDPSY------TSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN  276 (368)
Q Consensus       203 GtlV~LqNLDps~------ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~  276 (368)
                      ++.|||.||.+..      |.+||+++|...+.. ..++|+   .-+..+-|.|||.|.+.++|+.||..||+..|   +
T Consensus         1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i-~~v~i~---~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~---~   73 (81)
T 2krb_A            1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKI-TNDFYP---EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL---D   73 (81)
T ss_dssp             CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCE-EEEECC---CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCC---S
T ss_pred             CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCe-EEEEec---CCCCcEeEEEEEEECCHHHHHHHHHHhcCccc---C
Confidence            5789999999888      568899999876543 334444   23457789999999999999999999999988   9


Q ss_pred             Cc-eeee
Q 017670          277 GR-PLLG  282 (368)
Q Consensus       277 GR-PL~~  282 (368)
                      || ||..
T Consensus        74 g~~~l~V   80 (81)
T 2krb_A           74 KQHTFRV   80 (81)
T ss_dssp             SSSCCCC
T ss_pred             CceeEEe
Confidence            99 8864

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.77  E-value=9.9e-09  Score=78.66  Aligned_cols=85  Identities=14%  Similarity=0.105  Sum_probs=68.1

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ...+.|||.||.+.+|.+||+++|... . -..++++. ...+..+.|.|||.|.+.++|+.|| .||...|   +||+|
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-g-i~~v~i~~-~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~---~g~~l   85 (103)
T 2dng_A           13 EPPYTAYVGNLPFNTVQGDIDAIFKDL-S-IRSVRLVR-DKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALL---GDRSL   85 (103)
T ss_dssp             SSCEEEEEESCCTTCCHHHHHHHTTTS-C-EEEEEEEE-CSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEE---TTEEC
T ss_pred             CCCeEEEEeCCCCCCCHHHHHHHHHhC-C-ceEEEEee-cCCCCccceEEEEEECCHHHHHHHH-hhCCCeE---CCeEE
Confidence            356899999999999999999999886 3 33444332 3334567899999999999999999 9999877   99999


Q ss_pred             eeccCCCCCCCC
Q 017670          281 LGSIGTPCFTGK  292 (368)
Q Consensus       281 ~~S~g~~~~p~k  292 (368)
                      ......+..+.+
T Consensus        86 ~V~~a~~~~~~~   97 (103)
T 2dng_A           86 RVDIAEGRKQDK   97 (103)
T ss_dssp             EEEECCCCCCCC
T ss_pred             EEEEecCCCCCC
Confidence            988877655544

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=3.4e-08  Score=74.23  Aligned_cols=78  Identities=14%  Similarity=0.150  Sum_probs=64.9

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ...+.|||.||.+.+|.+||+++|...+.. ..++++         .|.|||.|.+.++|+.||..||...|   +||+|
T Consensus         8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v-~~v~~~---------~~~afV~f~~~~~a~~A~~~l~g~~~---~g~~l   74 (92)
T 2dgt_A            8 KASTKLHVGNISPTCTNQELRAKFEEYGPV-IECDIV---------KDYAFVHMERAEDAVEAIRGLDNTEF---QGKRM   74 (92)
T ss_dssp             CSSEEEEEESCCSSCCHHHHHHHHHTTSCC-CEEEEC---------SSEEEEEESCHHHHHHHHHHHTTEEE---TTEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEE---------CCEEEEEECCHHHHHHHHHHhCCCee---CCcEE
Confidence            457899999999999999999999886543 334333         44899999999999999999999987   99999


Q ss_pred             eeccCCCCCCC
Q 017670          281 LGSIGTPCFTG  291 (368)
Q Consensus       281 ~~S~g~~~~p~  291 (368)
                      ......+....
T Consensus        75 ~V~~a~~~~~~   85 (92)
T 2dgt_A           75 HVQLSTSRLRT   85 (92)
T ss_dssp             EEEESSCCCSC
T ss_pred             EEEEccCCCCC
Confidence            98888665443

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.77  E-value=3.4e-08  Score=75.15  Aligned_cols=79  Identities=20%  Similarity=0.196  Sum_probs=64.7

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHh-hccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAF-KENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~-ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      ...+.|||.||.+.+|.+||+++|...+ ..-...++         .-|.|||.|.+.++|..||..||..-|   +||+
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~---------~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~   80 (99)
T 2cpd_A           13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK---------IRDYAFVHFSNREDAVEAMKALNGKVL---DGSP   80 (99)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE---------CSSEEEEEESSHHHHHHHHHHHSSEEE---TTEE
T ss_pred             CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE---------eCCeEEEEeCCHHHHHHHHHHhCCCEe---CCcE
Confidence            4578999999999999999999999873 22223322         258999999999999999999999977   8999


Q ss_pred             eeeccCCCCCCC
Q 017670          280 LLGSIGTPCFTG  291 (368)
Q Consensus       280 L~~S~g~~~~p~  291 (368)
                      |....+.+....
T Consensus        81 l~v~~a~~~~~~   92 (99)
T 2cpd_A           81 IEVTLAKPVDKD   92 (99)
T ss_dssp             EEEECCCCCCCC
T ss_pred             EEEEECCCCCCC
Confidence            998888765443

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=98.77  E-value=7.5e-09  Score=77.95  Aligned_cols=79  Identities=14%  Similarity=0.167  Sum_probs=65.0

Q ss_pred             HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      .+.++.|||.||.+.+|.+||+++|...+..    +.+   .....+.|.|||.|.+.++|..||..||+..|   +||+
T Consensus        13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v----~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~   82 (96)
T 1fjc_A           13 VRAARTLLAKNLSFNITEDELKEVFEDALEI----RLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI---DGRS   82 (96)
T ss_dssp             TTGGGEEEEESCCSSCCHHHHHHHHCSEEEE----CCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEE---TTEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcE----EEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---CCeE
Confidence            4578999999999999999999999875422    223   34456789999999999999999999999877   9999


Q ss_pred             eeeccCCCC
Q 017670          280 LLGSIGTPC  288 (368)
Q Consensus       280 L~~S~g~~~  288 (368)
                      |......+.
T Consensus        83 l~v~~a~~~   91 (96)
T 1fjc_A           83 VSLYYTGEK   91 (96)
T ss_dssp             EEEEECSSS
T ss_pred             EEEEEcCCC
Confidence            997766543

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=98.76  E-value=9.7e-09  Score=83.70  Aligned_cols=85  Identities=12%  Similarity=0.031  Sum_probs=68.5

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      +.++.|||.||.+.+|.+||+++|...+.. ...+++ ....+..+.|.|||.|.+.++|+.||..||+..|   +||+|
T Consensus        44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I-~~v~i~-~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i---~g~~l  118 (129)
T 2kxn_B           44 DPNCCLGVFGLSLYTTERDLREVFSKYGPI-ADVSIV-YDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL---DGRRI  118 (129)
T ss_dssp             CCSSCBCEETCTTSCCHHHHHHHHTTTSCE-EEEEEE-CCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCS---SSSCC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEE-ecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE---CCEEE
Confidence            457899999999999999999999876543 333333 2333457789999999999999999999999877   99999


Q ss_pred             eeccCCCCCC
Q 017670          281 LGSIGTPCFT  290 (368)
Q Consensus       281 ~~S~g~~~~p  290 (368)
                      ......+..|
T Consensus       119 ~V~~a~~~~p  128 (129)
T 2kxn_B          119 RVDFSITKRP  128 (129)
T ss_dssp             EESCCSSSSC
T ss_pred             EEEEecCCCC
Confidence            9877766544

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.76  E-value=4.4e-09  Score=80.01  Aligned_cols=84  Identities=15%  Similarity=0.093  Sum_probs=67.1

Q ss_pred             HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      .+..+.|||.||.+.+|.+||+++|...+.. ...+++. ...+..+.|.|||.|.+.++|..||..||+..+   +||+
T Consensus         5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i-~~~~i~~-~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~   79 (104)
T 1p1t_A            5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPV-VSFRLVY-DRETGKPKGYGFCEYQDQETALSAMRNLNGREF---SGRA   79 (104)
T ss_dssp             HHHHSCEEEESCCTTSCHHHHHHHHHTTSCC-SEEEEEE-ETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC---SSSC
T ss_pred             CCCccEEEEeCCCCcCCHHHHHHHHHhcCCe-eEEEEEe-CCCCCccceEEEEEECCHHHHHHHHHHhCCCee---CCcE
Confidence            4567899999999999999999999886543 3333332 223456679999999999999999999999887   9999


Q ss_pred             eeeccCCCC
Q 017670          280 LLGSIGTPC  288 (368)
Q Consensus       280 L~~S~g~~~  288 (368)
                      |......+.
T Consensus        80 l~v~~a~~~   88 (104)
T 1p1t_A           80 LRVDNAASE   88 (104)
T ss_dssp             BEEEETTCT
T ss_pred             EEEEeCCCc
Confidence            997766543

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=98.75  E-value=2.3e-08  Score=79.27  Aligned_cols=78  Identities=18%  Similarity=0.159  Sum_probs=64.0

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      .++.|||.||.+.+|.+||+++|...+... ..+ |+....+..+.|.|||.|.+.++|..||..||+.-|   +||+|.
T Consensus        62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~-~v~-i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~  136 (140)
T 2ku7_A           62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDIT-DIQ-IPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL---FGRTIR  136 (140)
T ss_dssp             SCCEEEEECCCTTCCHHHHHHHHGGGSCEE-EEE-CCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEE---TTEEEE
T ss_pred             CCcEEEEEeCCCCCCHHHHHHHHHhcCCEE-EEE-EeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEE---CCEEEE
Confidence            589999999999999999999998765432 333 333444567889999999999999999999999877   899997


Q ss_pred             ecc
Q 017670          282 GSI  284 (368)
Q Consensus       282 ~S~  284 (368)
                      -..
T Consensus       137 v~~  139 (140)
T 2ku7_A          137 VNL  139 (140)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            543

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.75  E-value=3.5e-08  Score=80.40  Aligned_cols=83  Identities=18%  Similarity=0.118  Sum_probs=65.9

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ..++.|||.||.+.+|.+||+++|..-+. -..++++..       -|.|||-|.+.++|..||..|+..-..+ +||||
T Consensus        14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~-V~~v~i~~~-------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l-~Gr~l   84 (105)
T 1sjq_A           14 VPSRVIHIRKLPIDVTEGEVISLGLPFGK-VTNLLMLKG-------KNQAFIEMNTEEAANTMVNYYTSVTPVL-RGQPI   84 (105)
T ss_dssp             CCCCEEEECSCCTTSCHHHHHHHHHHHCC-EEEEEEETT-------TTEEEEEESSHHHHHHHHHHHTTSCCEE-TTEEC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEEcC-------CCEEEEEECCHHHHHHHHHHhccCCceE-CCEEE
Confidence            45789999999999999999999988654 445556542       5999999999999999999997521122 89999


Q ss_pred             eeccCCCCCCCC
Q 017670          281 LGSIGTPCFTGK  292 (368)
Q Consensus       281 ~~S~g~~~~p~k  292 (368)
                      ....+.+.....
T Consensus        85 ~V~~A~~~~~~~   96 (105)
T 1sjq_A           85 YIQFSNHKELKT   96 (105)
T ss_dssp             CBCCCSSSSCCC
T ss_pred             EEEEcCCCCCCc
Confidence            988876655444

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=98.75  E-value=1.9e-08  Score=72.67  Aligned_cols=73  Identities=16%  Similarity=0.084  Sum_probs=59.3

Q ss_pred             EEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeecc
Q 017670          206 VVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSI  284 (368)
Q Consensus       206 V~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S~  284 (368)
                      |||.||.+..|.+||+++|.+.+.. ...++ +....+..+.|.|||.|.+.++|+.|+. +|...+   +||+|....
T Consensus         2 l~v~nlp~~~t~~~l~~~F~~~G~i-~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~---~g~~l~v~~   74 (75)
T 2mss_A            2 IFVGGLSVNTTVEDVKHYFEQFGKV-DDAML-MFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEI---NNKMVECKK   74 (75)
T ss_dssp             EEEECCCSSCCHHHHHHHHHTTSCC-SEECC-CBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCS---SSCCCEEEC
T ss_pred             EEEecCCCCCCHHHHHHHHHhcCCE-EEEEE-EecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEE---CCEEEEEEe
Confidence            8999999999999999999886543 33333 3334456788999999999999999998 888877   999987643

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=98.75  E-value=2.9e-08  Score=75.59  Aligned_cols=76  Identities=18%  Similarity=0.044  Sum_probs=63.7

Q ss_pred             cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeec
Q 017670          204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS  283 (368)
Q Consensus       204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S  283 (368)
                      |.|||.||.+.+|.+||+++|...+.. ...+++..      +.|.|||.|.+.++|+.||..||+..+   +||+|...
T Consensus         1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~V~   70 (101)
T 2hvz_A            1 MKVYVGNLGTGAGKGELERAFSYYGPL-RTVWIARN------PPGFAFVEFEDPRDAEDAVRGLDGKVI---CGSRVRVE   70 (101)
T ss_dssp             CEEEEECCCSSCSHHHHHHHHHHHCCC-SEEEEESS------SSSEEEEECSSHHHHHHHHHHHHHSCS---SSCCCEEE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEeeC------CCCEEEEEECCHHHHHHHHHHHCCCeE---CCcEEEEE
Confidence            579999999999999999999987754 33333332      789999999999999999999999877   99999988


Q ss_pred             cCCCCC
Q 017670          284 IGTPCF  289 (368)
Q Consensus       284 ~g~~~~  289 (368)
                      .+.+..
T Consensus        71 ~a~~~~   76 (101)
T 2hvz_A           71 LSTGMP   76 (101)
T ss_dssp             ESSSCC
T ss_pred             EccCCC
Confidence            776544

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.75  E-value=9.3e-09  Score=74.15  Aligned_cols=75  Identities=12%  Similarity=0.090  Sum_probs=59.9

Q ss_pred             cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeec
Q 017670          204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS  283 (368)
Q Consensus       204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S  283 (368)
                      |.|||.||.+..|.+||+++|...+... ..++ ++..-+..+.|.|||.|.+.++|+.|+..++ ..+   +||+|...
T Consensus         1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~-~v~i-~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~---~g~~l~v~   74 (77)
T 1uaw_A            1 CKMFIGGLSWQTTQEGLREYFGQFGEVK-ECLV-MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HEL---DSKTIDPK   74 (77)
T ss_dssp             CCEEEESCCSSCCSHHHHHHHTTTSCCC-CEEE-ECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCC---SSCCCEEE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEE-ecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-Ccc---CCEEEEEE
Confidence            4689999999999999999998866532 2333 3333446778999999999999999999999 555   99998765


Q ss_pred             c
Q 017670          284 I  284 (368)
Q Consensus       284 ~  284 (368)
                      .
T Consensus        75 ~   75 (77)
T 1uaw_A           75 V   75 (77)
T ss_dssp             E
T ss_pred             e
Confidence            4

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=98.74  E-value=1e-08  Score=78.09  Aligned_cols=80  Identities=14%  Similarity=0.137  Sum_probs=63.8

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccce-------ecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCS-------AKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLL  273 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~-------AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~  273 (368)
                      ...+.|||.||.+.+|.+||+++|...+.....       ++++. ...+....|.|||.|.+.++|..||..||+..| 
T Consensus        11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~-~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~-   88 (99)
T 2la6_A           11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYT-DRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF-   88 (99)
T ss_dssp             CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEE-CTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS-
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEe-cCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe-
Confidence            357899999999999999999999987654421       33322 223356779999999999999999999999977 


Q ss_pred             ecCCceeeecc
Q 017670          274 LSNGRPLLGSI  284 (368)
Q Consensus       274 ls~GRPL~~S~  284 (368)
                        +||+|....
T Consensus        89 --~g~~l~V~~   97 (99)
T 2la6_A           89 --SGNPIKVSF   97 (99)
T ss_dssp             --SSSBCEEEE
T ss_pred             --CCcEEEEEe
Confidence              899998654

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=98.74  E-value=1.2e-08  Score=80.61  Aligned_cols=79  Identities=24%  Similarity=0.196  Sum_probs=64.0

Q ss_pred             ccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670          203 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG  282 (368)
Q Consensus       203 GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~  282 (368)
                      .|.|||.||++.+|.+||+++|.+.+.. ..++++...   +.+-|.|||.|.+.++|+.||..||...|   +||+|..
T Consensus         5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v-~~v~i~~d~---~~~kg~afV~f~~~~~A~~Ai~~l~~~~~---~g~~i~V   77 (115)
T 4f25_A            5 SGNIFIKNLDKSIDNKALYDTFSAFGNI-LSCKVVCDE---NGSKGYGFVHFETQEAAERAIEKMNGMLL---NDRKVFV   77 (115)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEEEET---TEEEEEEEEEESCHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred             CCEEEECCCCCCCCHHHHHHHHhccCCE-EEEEEeecC---CCCCceEEEEECCHHHHHHHHHHcCCCEE---CCEEEEE
Confidence            4679999999999999999999886543 344444321   23458999999999999999999999987   9999998


Q ss_pred             ccCCCC
Q 017670          283 SIGTPC  288 (368)
Q Consensus       283 S~g~~~  288 (368)
                      ....+.
T Consensus        78 ~~a~~~   83 (115)
T 4f25_A           78 GRFKSR   83 (115)
T ss_dssp             EESSCC
T ss_pred             EECCCc
Confidence            776543

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=98.74  E-value=1e-08  Score=80.75  Aligned_cols=85  Identities=16%  Similarity=0.114  Sum_probs=67.8

Q ss_pred             HHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCC
Q 017670          198 VAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG  277 (368)
Q Consensus       198 ~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G  277 (368)
                      .+...++.|||.||.+.+|.+||+++|...+.. ...+++ ....+..+.|.|||.|.+.++|..||..||+..|   +|
T Consensus        21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~i~-~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i---~g   95 (108)
T 2jrs_A           21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRI-ESIQLM-MDSETGRSKGYGFITFSDSECAKKALEQLNGFEL---AG   95 (108)
T ss_dssp             CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCE-EEEEEE-EETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCS---SS
T ss_pred             cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEE-EcCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---CC
Confidence            344567999999999999999999999876543 334333 2233456679999999999999999999999877   99


Q ss_pred             ceeeeccCCC
Q 017670          278 RPLLGSIGTP  287 (368)
Q Consensus       278 RPL~~S~g~~  287 (368)
                      |+|..+.+.+
T Consensus        96 ~~l~V~~a~~  105 (108)
T 2jrs_A           96 RPMKVGHVTE  105 (108)
T ss_dssp             SCCEEECSCS
T ss_pred             EEEEEEEccc
Confidence            9999877654

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=98.74  E-value=1.6e-08  Score=79.02  Aligned_cols=79  Identities=16%  Similarity=0.112  Sum_probs=64.1

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ..++.|||.||.+.+|.+||+++|...+.. ...+++ +...+..+.|.|||.|.+.++|+.||..||+..|   +||+|
T Consensus        38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~~~i~-~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l  112 (118)
T 2khc_A           38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNV-ISAKVF-IDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQV---GTKRL  112 (118)
T ss_dssp             CCSEEEEEECSCTTCCHHHHHHHTTTSCEE-EEEEEC-CCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEE---TTEEC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEE-eCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEE---CCEEE
Confidence            457999999999999999999999875542 334333 2334567889999999999999999999999887   99998


Q ss_pred             eecc
Q 017670          281 LGSI  284 (368)
Q Consensus       281 ~~S~  284 (368)
                      ....
T Consensus       113 ~V~~  116 (118)
T 2khc_A          113 KVQL  116 (118)
T ss_dssp             CEEE
T ss_pred             EEEe
Confidence            7543

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=98.73  E-value=2.7e-08  Score=79.74  Aligned_cols=87  Identities=11%  Similarity=0.045  Sum_probs=69.1

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      +..+.|||.||.+.+|.+||.++|...+.. ..++++. ...+..+.|.|||.|.+.++|+.||..||+..|   +||+|
T Consensus        40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i-~~v~i~~-~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l  114 (139)
T 1u6f_A           40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPI-ESVKIVC-DRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNI---LNKRL  114 (139)
T ss_dssp             TTTSEEEEESCSTTCCHHHHHHHHHHHSCE-EEEEEEE-ETTTTEEEEEEEEEESSHHHHHHHHHHTTTEEC---SSCEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEE-cCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---CCeEE
Confidence            457899999999999999999999987653 2333332 222355678999999999999999999999877   99999


Q ss_pred             eeccCCCCCCCC
Q 017670          281 LGSIGTPCFTGK  292 (368)
Q Consensus       281 ~~S~g~~~~p~k  292 (368)
                      ....+.+....+
T Consensus       115 ~v~~a~~~~~~~  126 (139)
T 1u6f_A          115 KVALAASGHQRP  126 (139)
T ss_dssp             EEEESSCCCCCC
T ss_pred             EEEECCCCCCCC
Confidence            988876654433

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}

Probab=98.73  E-value=2.4e-08  Score=80.92  Aligned_cols=78  Identities=14%  Similarity=0.106  Sum_probs=65.5

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      .-+++|||+||.+.+|.+||++||..- +.-..++|++       .-|.|||.|.+.++|..||..||+.-+.+ +||||
T Consensus        19 ~ps~~l~V~NLp~~~te~~L~~lF~~f-G~V~~v~i~~-------~kg~AFVef~~~~~A~~Av~~ln~~~~~i-~Gr~i   89 (100)
T 3r27_A           19 PASPVVHIRGLIDGVVEADLVEALQEF-GPISYVVVMP-------KKRQALVEFEDVLGACNAVNYAADNQIYI-AGHPA   89 (100)
T ss_dssp             CCCSEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEET-------TTTEEEEEESSHHHHHHHHHHHHHSCEEE-TTEEE
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHhcc-CCEEEEEEEc-------CCCEEEEEECCHHHHHHHHHHhcCCCcee-CCcEE
Confidence            467899999999999999999999874 4556777764       35899999999999999999999876544 99999


Q ss_pred             eeccCCC
Q 017670          281 LGSIGTP  287 (368)
Q Consensus       281 ~~S~g~~  287 (368)
                      +-.....
T Consensus        90 ~V~~S~~   96 (100)
T 3r27_A           90 FVNYSTS   96 (100)
T ss_dssp             EEEECSC
T ss_pred             EEEeccc
Confidence            9776543

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=4.2e-08  Score=73.45  Aligned_cols=79  Identities=16%  Similarity=0.084  Sum_probs=65.1

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      +..+.|||.||.+.+|.+||+++|...+.. ...+++         .|.|||.|.+.++|+.||..||...|   +||+|
T Consensus         6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~~~---------~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l   72 (90)
T 2dnq_A            6 SGMVKLFIGNLPREATEQEIRSLFEQYGKV-LECDII---------KNYGFVHIEDKTAAEDAIRNLHHYKL---HGVNI   72 (90)
T ss_dssp             SCCEEEEEESCCSSCCHHHHHHHHHTSSCE-EEEEEE---------TTEEEEEESSHHHHHHHHHHHTTCBC---SSCBC
T ss_pred             CCCeEEEEeCCCCCCCHHHHHHHHHhCCCE-EEEEEE---------CCEEEEEECCHHHHHHHHHHhcCCcc---CCcEE
Confidence            456899999999999999999999886543 233333         58999999999999999999999877   99999


Q ss_pred             eeccCCCCCCCC
Q 017670          281 LGSIGTPCFTGK  292 (368)
Q Consensus       281 ~~S~g~~~~p~k  292 (368)
                      ......+..+..
T Consensus        73 ~v~~a~~~~~~~   84 (90)
T 2dnq_A           73 NVEASKNKSKAS   84 (90)
T ss_dssp             EEECSSCCCCCC
T ss_pred             EEEECCCCCCCC
Confidence            988876655443

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.73  E-value=1.1e-08  Score=79.35  Aligned_cols=83  Identities=17%  Similarity=0.217  Sum_probs=64.9

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhcccee-----eec
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL-----LLS  275 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL-----~ls  275 (368)
                      ...+.|||.||.+.+|.+||+++|...+. -..++++...  +..+-|.|||.|.+.++|+.||..||+..|     +..
T Consensus        23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~~~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~   99 (114)
T 1x5o_A           23 QDPTNLYISNLPLSMDEQELENMLKPFGQ-VISTRILRDS--SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA   99 (114)
T ss_dssp             CCTTEEEEESCCTTCCHHHHHHTTTTTSC-EEEEEEEECS--SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEEECC--CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence            35689999999999999999999987554 3344444332  567789999999999999999999999877     222


Q ss_pred             CCceeeeccCC
Q 017670          276 NGRPLLGSIGT  286 (368)
Q Consensus       276 ~GRPL~~S~g~  286 (368)
                      .||||......
T Consensus       100 ~~~~l~v~~a~  110 (114)
T 1x5o_A          100 PTEPLLCKFSG  110 (114)
T ss_dssp             CSSCBEEEECC
T ss_pred             CCCceeEEccC
Confidence            57778776665

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=98.73  E-value=1.7e-08  Score=82.72  Aligned_cols=88  Identities=17%  Similarity=0.139  Sum_probs=71.0

Q ss_pred             HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      .+.++.|||.||.+.+|.+||+++|...+.. ..++++ .......+.|.|||.|.+.++|+.||..||+..|   +||+
T Consensus        44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i-~~v~i~-~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i---~g~~  118 (135)
T 2lea_A           44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRV-GDVYIP-RDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL---DGRE  118 (135)
T ss_dssp             GGGCCCEEEECCCSSCHHHHHHHHHGGGSCC-SEEECC-CCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCS---SSSC
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEE-ecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---CCEE
Confidence            3568999999999999999999999886643 333333 3334467889999999999999999999999987   9999


Q ss_pred             eeeccCCCCCCCC
Q 017670          280 LLGSIGTPCFTGK  292 (368)
Q Consensus       280 L~~S~g~~~~p~k  292 (368)
                      |......+..|..
T Consensus       119 l~V~~a~~~~~~~  131 (135)
T 2lea_A          119 LRVQMARYGRPPD  131 (135)
T ss_dssp             CEEEECCCCCCCT
T ss_pred             EEEEECCCCCCCc
Confidence            9988876655443

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=98.72  E-value=4.2e-08  Score=75.38  Aligned_cols=79  Identities=16%  Similarity=0.159  Sum_probs=65.8

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ...+.|||.||.+.+|.+||+++|...+.. ..++++         .|.|||.|.+.++|..||..||...|   +||+|
T Consensus         9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i-~~v~~~---------~~~afV~f~~~~~a~~A~~~l~g~~~---~g~~l   75 (103)
T 2dgu_A            9 AKVKVLFVRNLANTVTEEILEKAFSQFGKL-ERVKKL---------KDYAFIHFDERDGAVKAMEEMNGKDL---EGENI   75 (103)
T ss_dssp             CCCCCEEEECCCTTCCHHHHHHHHHHHSCE-EEEEEC---------SSCEEEEESSHHHHHHHHHHHTTEEE---TTEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEE---------CCEEEEEeCCHHHHHHHHHHHCCCcc---CCCEE
Confidence            456899999999999999999999986653 233332         46899999999999999999999977   89999


Q ss_pred             eeccCCCCCCCC
Q 017670          281 LGSIGTPCFTGK  292 (368)
Q Consensus       281 ~~S~g~~~~p~k  292 (368)
                      ......+....+
T Consensus        76 ~v~~a~~~~~~~   87 (103)
T 2dgu_A           76 EIVFAKPPDQKR   87 (103)
T ss_dssp             EEEECCCCCCCC
T ss_pred             EEEEcCCCcccc
Confidence            998887665544

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.72  E-value=4.8e-08  Score=76.27  Aligned_cols=82  Identities=16%  Similarity=0.038  Sum_probs=66.2

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ...+.|||.||.+.+|.+||+++|...+.. ..++++ .......+.|.|||.|.+.++|+.||..+|. .|   +||+|
T Consensus        15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~-~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~---~g~~l   88 (116)
T 2cqd_A           15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDI-EEAVVI-TDRQTGKSRGYGFVTMADRAAAERACKDPNP-II---DGRKA   88 (116)
T ss_dssp             CSSSEEEEECCCSSCCHHHHHHHHHTTSCE-EEEEES-CCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EE---TTEEC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCCCe-eEEEEE-EcCCCCccceEEEEEECCHHHHHHHHHhCCC-cC---CCEEE
Confidence            457899999999999999999999875543 334333 3334467889999999999999999999996 55   89999


Q ss_pred             eeccCCCC
Q 017670          281 LGSIGTPC  288 (368)
Q Consensus       281 ~~S~g~~~  288 (368)
                      ......+.
T Consensus        89 ~V~~a~~~   96 (116)
T 2cqd_A           89 NVNLAYLG   96 (116)
T ss_dssp             EEEESTTT
T ss_pred             EEEEcccC
Confidence            98887543

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.72  E-value=2.5e-08  Score=78.82  Aligned_cols=74  Identities=12%  Similarity=-0.017  Sum_probs=62.3

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      .++.|||.||.+.+|.+||+++|...+.. ..++|+       +.-|.|||.|.+.++|..||..||...|   +||||.
T Consensus         9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i-~~v~i~-------~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~   77 (111)
T 1whx_A            9 SKTVILAKNLPAGTLAAEIQETFSRFGSL-GRVLLP-------EGGITAIVEFLEPLEARKAFRHLAYSKF---HHVPLY   77 (111)
T ss_dssp             EEEEEEEESCCTTCCHHHHHHHHHTTSCE-EEEECC-------SSSSCEEEEESCHHHHHHHHHHHTTCBS---SSSBCE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEe-------CCCCEEEEEeCCHHHHHHHHHHhCCCEE---CCeEEE
Confidence            47899999999999999999999986654 334443       2457899999999999999999999887   999998


Q ss_pred             eccCC
Q 017670          282 GSIGT  286 (368)
Q Consensus       282 ~S~g~  286 (368)
                      ...+.
T Consensus        78 V~~a~   82 (111)
T 1whx_A           78 LEWAP   82 (111)
T ss_dssp             EEEEE
T ss_pred             EEECC
Confidence            76653

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=98.72  E-value=3.8e-08  Score=79.76  Aligned_cols=108  Identities=14%  Similarity=0.110  Sum_probs=79.4

Q ss_pred             HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      ...++.|||.||.+.+|.+||+++|.+.|....   .+........+-|.|||.|.+.++|..|| +||+..|   +||+
T Consensus        10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~---~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~---~g~~   82 (175)
T 1fje_B           10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND---LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKV---FGNE   82 (175)
T ss_dssp             CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT---CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEE---TTEE
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce---EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEe---CCeE
Confidence            346789999999999999999999999887643   22223344678899999999999999999 6999877   8999


Q ss_pred             eeeccCCCCCCCC----CCccccceehhhHHHHHHHHHHhhhc
Q 017670          280 LLGSIGTPCFTGK----QSKFVGHLALDKLKFQMQREMREAVS  318 (368)
Q Consensus       280 L~~S~g~~~~p~k----~s~f~GHl~i~k~r~q~qrEmr~AVS  318 (368)
                      |......+.....    ..-|+|.|.-+-    ..+++++..+
T Consensus        83 l~v~~~~~~~~~~~~~~~~l~v~nlp~~~----t~~~l~~~F~  121 (175)
T 1fje_B           83 IKLEKPKGRDSKKVRAARTLLAKNLSFNI----TEDELKEVFE  121 (175)
T ss_dssp             EEEECCCCSSCSTTGGGGEEEEESCCSSC----CHHHHHHHCT
T ss_pred             EEEecCCCccccccccCCEEEEeCCCCCC----CHHHHHHHHH
Confidence            9988776543322    344666665432    2345555443

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=98.71  E-value=2.1e-08  Score=82.24  Aligned_cols=90  Identities=16%  Similarity=0.072  Sum_probs=71.5

Q ss_pred             HHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCC
Q 017670          198 VAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG  277 (368)
Q Consensus       198 ~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G  277 (368)
                      .+.+..+.|||.||.+.+|.+||+++|...+... .++++. ...+..+.|.|||.|.+.++|+.||..||...|   +|
T Consensus        34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~-~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g  108 (156)
T 1h2v_Z           34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIK-KIIMGL-DKMKKTACGFCFVEYYSRADAENAMRYINGTRL---DD  108 (156)
T ss_dssp             TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEE-CTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEE---TT
T ss_pred             ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEe-cCCCCccceEEEEEECCHHHHHHHHHHhCCCEE---CC
Confidence            3456789999999999999999999998766532 333332 222345678999999999999999999999888   99


Q ss_pred             ceeeeccCCCCCCCC
Q 017670          278 RPLLGSIGTPCFTGK  292 (368)
Q Consensus       278 RPL~~S~g~~~~p~k  292 (368)
                      ++|......+..+.+
T Consensus       109 ~~l~V~~a~~~~~~~  123 (156)
T 1h2v_Z          109 RIIRTDWDAGFKEGR  123 (156)
T ss_dssp             EECEEEEESCCCTTC
T ss_pred             eEEEEEECCCCCCcC
Confidence            999988887655544

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=98.71  E-value=1.7e-08  Score=80.50  Aligned_cols=79  Identities=14%  Similarity=0.136  Sum_probs=64.2

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      ..+.|||.||++.+|.+||+++|...+.. ..++++ .......+-|.|||.|.+.++|+.||..||...|   +||+|.
T Consensus         5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i-~~v~i~-~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~---~gr~i~   79 (110)
T 3s8s_A            5 PLKEVTFARLNDNVRETFLKDMCRKYGEV-EEVEIL-LHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV---MGNIIH   79 (110)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHTTTSCE-EEEEEE-ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECE
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHhcCCe-eEEEEE-ECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE---CCeEEE
Confidence            35789999999999999999999876543 344333 3334456789999999999999999999999988   999998


Q ss_pred             eccC
Q 017670          282 GSIG  285 (368)
Q Consensus       282 ~S~g  285 (368)
                      ....
T Consensus        80 V~~a   83 (110)
T 3s8s_A           80 AQLD   83 (110)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            6544

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=98.70  E-value=4.6e-08  Score=79.07  Aligned_cols=72  Identities=15%  Similarity=0.143  Sum_probs=61.6

Q ss_pred             ccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670          203 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG  282 (368)
Q Consensus       203 GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~  282 (368)
                      .+-||+.||++..|.+++++||.+.+...- .+++       ++-|.|||.|.+.++|+.||+.||+.-|   +||||..
T Consensus         7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~-~~l~-------~~kGfaFVey~~~~eA~~Ai~~Ln~~~l---~gr~I~V   75 (89)
T 2wbr_A            7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVS-FHPY-------LNQGIALCKYTTREEANKAQMALNNCVL---ANTTIFA   75 (89)
T ss_dssp             CCEEEEECCCTTCCCHHHHHHHHHHSCEEE-EEEE-------TTTTEEEEEESSHHHHHHHHHHHTTEEE---TTEEEEE
T ss_pred             cceEEEeCCCccCCHHHHHHHHHhhCCEEE-EEEc-------CCCcEEEEEECCHHHHHHHHHHhcCCEE---CCcEEEE
Confidence            456899999999999999999999887532 2222       3689999999999999999999999777   9999997


Q ss_pred             ccC
Q 017670          283 SIG  285 (368)
Q Consensus       283 S~g  285 (368)
                      ..+
T Consensus        76 ~~A   78 (89)
T 2wbr_A           76 ESP   78 (89)
T ss_dssp             ECC
T ss_pred             EEC
Confidence            766

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=98.69  E-value=3.9e-08  Score=77.25  Aligned_cols=92  Identities=13%  Similarity=0.083  Sum_probs=64.1

Q ss_pred             HHHHHHHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhcccee
Q 017670          193 EERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL  272 (368)
Q Consensus       193 Ee~lr~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL  272 (368)
                      .+.+....+.++.|||.||.+.+|.+||+++|...+.. ..++++ ....+..+.|.|||.|.+.++|+.||..++ ..|
T Consensus        15 ~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i-~~v~i~-~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l   91 (109)
T 2rs2_A           15 VPRGSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEV-KECLVM-RDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HEL   91 (109)
T ss_dssp             -----------CCEEEESCCTTCCHHHHHHHHTTTSCE-EEEEEC-CCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEE
T ss_pred             CccccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCe-EEEEEE-ECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcC
Confidence            44445556788999999999999999999999876543 333333 233345778999999999999999999875 434


Q ss_pred             eecCCceeeeccCCCCCC
Q 017670          273 LLSNGRPLLGSIGTPCFT  290 (368)
Q Consensus       273 ~ls~GRPL~~S~g~~~~p  290 (368)
                         +||+|....+.+...
T Consensus        92 ---~g~~l~V~~a~~~~~  106 (109)
T 2rs2_A           92 ---DSKTIDPKVAFPRRA  106 (109)
T ss_dssp             ---TTEEEEEEECCCCCC
T ss_pred             ---CCEEEEEEEccCCCC
Confidence               999999887766544

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=2.7e-08  Score=76.25  Aligned_cols=86  Identities=17%  Similarity=0.106  Sum_probs=67.6

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      +..+.|||.||.+.+|.+||+++|...+.. ..++++. ......+.|.|||.|.+.++|+.||.. |...|   +||+|
T Consensus        14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v-~~v~i~~-~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~---~g~~l   87 (105)
T 2dh8_A           14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEV-VDCVIMK-DKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTL---DGRNI   87 (105)
T ss_dssp             SSSSEECCBSCCTTCCHHHHHHHHHTTSCE-EEEEEEE-CSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEE---TTEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEee-CCCCCCcceEEEEEECCHHHHHHHHHh-CCCeE---CCEEE
Confidence            467899999999999999999999886543 3343332 233456779999999999999999999 77666   99999


Q ss_pred             eeccCCCCCCCC
Q 017670          281 LGSIGTPCFTGK  292 (368)
Q Consensus       281 ~~S~g~~~~p~k  292 (368)
                      ......+....+
T Consensus        88 ~V~~a~~~~~~~   99 (105)
T 2dh8_A           88 DPKPCTPRGMQP   99 (105)
T ss_dssp             BCCCSCCSSCCT
T ss_pred             EEEEccCCCCCC
Confidence            988877655443

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=98.69  E-value=2.4e-08  Score=84.28  Aligned_cols=82  Identities=12%  Similarity=0.028  Sum_probs=65.7

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhh-ccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFK-ENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~k-e~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      +.++.|||.||.+.+|.+||+++|...+. .-..++++. ...+...-|.|||.|.+.++|+.||..||+..|   +||+
T Consensus        53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~-d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~---~Gr~  128 (156)
T 3n9u_C           53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAE-NRANGQSKGYAEVVVASENSVHKLLELLPGKVL---NGEK  128 (156)
T ss_dssp             ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEE-CTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEE---TTEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEe-cCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---CCeE
Confidence            46799999999999999999999987663 455555543 233456678999999999999999999999987   9999


Q ss_pred             eeeccCC
Q 017670          280 LLGSIGT  286 (368)
Q Consensus       280 L~~S~g~  286 (368)
                      |....+.
T Consensus       129 l~V~~a~  135 (156)
T 3n9u_C          129 VDVRPAT  135 (156)
T ss_dssp             CEEEECC
T ss_pred             eEEEEcC
Confidence            9977654

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=98.68  E-value=6e-08  Score=79.05  Aligned_cols=78  Identities=19%  Similarity=0.037  Sum_probs=65.3

Q ss_pred             HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      ...++.|||.||.+.+|.+||+++|...+. -..++++..      +.|.|||.|.+.++|..||..||+.-|   +|||
T Consensus        70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~-i~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~  139 (150)
T 2i2y_A           70 CPLDCKVYVGNLGNNGNKTELERAFGYYGP-LRSVWVARN------PPGFAFVEFEDPRDAADAVRELDGRTL---CGCR  139 (150)
T ss_dssp             STTSCEEEEESCCSCCSCHHHHHHHHHHSC-EEEEEECSS------SCSEEEEEESSHHHHHHHHHHHSSSCS---SSSC
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhhCC-EEEEEEeeC------CCcEEEEEECCHHHHHHHHHHcCCCEE---CCeE
Confidence            346799999999999999999999998664 344544432      579999999999999999999999877   9999


Q ss_pred             eeeccCCC
Q 017670          280 LLGSIGTP  287 (368)
Q Consensus       280 L~~S~g~~  287 (368)
                      |..+.+.+
T Consensus       140 l~v~~a~~  147 (150)
T 2i2y_A          140 VRVELSNG  147 (150)
T ss_dssp             CEEEECCC
T ss_pred             EEEEEcCC
Confidence            99877654

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=98.68  E-value=2.3e-08  Score=80.91  Aligned_cols=89  Identities=11%  Similarity=0.148  Sum_probs=68.4

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccce-ecccCCc--ccCCCCCceEEEEEechHHHHHHHHhhccceeeecCC
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCS-AKMIPRV--AFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG  277 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~-AkmI~~~--~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G  277 (368)
                      ..++.|||.||.+.+|.+||+++|...+..... .++|-.+  .....+.|.|||.|.+.++|..||..||+.-|   +|
T Consensus        43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~---~g  119 (143)
T 3egn_A           43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL---FG  119 (143)
T ss_dssp             SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEE---TT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe---CC
Confidence            457899999999999999999999886654321 1111111  13457789999999999999999999999987   99


Q ss_pred             ceeeeccCCCCCCCC
Q 017670          278 RPLLGSIGTPCFTGK  292 (368)
Q Consensus       278 RPL~~S~g~~~~p~k  292 (368)
                      |+|....+.+.-|..
T Consensus       120 ~~l~V~~a~~~~~~~  134 (143)
T 3egn_A          120 KPMVVQFARSARPKQ  134 (143)
T ss_dssp             EECEEEECCCSCC--
T ss_pred             cEEEEEECCCCCCcc
Confidence            999988886655543

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.68  E-value=1.2e-08  Score=75.34  Aligned_cols=79  Identities=22%  Similarity=0.133  Sum_probs=63.6

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ..++.|||.||.+.+|.+||+++|...+. -..++++ ....+..+.|.|||.|.+.++|..||..||+.-|   +||++
T Consensus         3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~-i~~~~i~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~~   77 (85)
T 1x4e_A            3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGK-IVSTKAI-LDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGV---QAQMA   77 (85)
T ss_dssp             CCCCEEEEESCCTTCCHHHHHTTSTTTSC-EEEEEEE-CCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTC---CEESC
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEE-ecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeE---eeEEE
Confidence            46899999999999999999999986553 2333333 3334567889999999999999999999999877   89988


Q ss_pred             eecc
Q 017670          281 LGSI  284 (368)
Q Consensus       281 ~~S~  284 (368)
                      -.+.
T Consensus        78 ~~~~   81 (85)
T 1x4e_A           78 KQSG   81 (85)
T ss_dssp             CSSC
T ss_pred             eecC
Confidence            6543

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.68  E-value=3.6e-08  Score=77.29  Aligned_cols=90  Identities=16%  Similarity=0.157  Sum_probs=67.6

Q ss_pred             ChHHHHHHH-HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhcc
Q 017670          191 PWEERIRVA-HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEE  269 (368)
Q Consensus       191 PWEe~lr~A-~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~  269 (368)
                      |+..++... ...++.|||.||.+.+|.+||+++|...+.. ...+++...   ..+.|.|||.|.+.++|+.|+..||+
T Consensus        16 ~~~~S~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~i~~~~---~~~kg~afV~f~~~~~A~~Ai~~l~g   91 (109)
T 2err_A           16 PRGSHMNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKI-LDVEIIFNE---RGSKGFGFVTFENSADADRAREKLHG   91 (109)
T ss_dssp             ------CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCC-SCEEECCBT---TBCTTEEEEECCCSHHHHHHHHHHTT
T ss_pred             CCCCCCCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCE-EEEEEEECC---CCCceEEEEEECCHHHHHHHHHHcCC
Confidence            444444443 5678999999999999999999999876543 334443322   24679999999999999999999999


Q ss_pred             ceeeecCCceeeeccCCC
Q 017670          270 GCLLLSNGRPLLGSIGTP  287 (368)
Q Consensus       270 ~cL~ls~GRPL~~S~g~~  287 (368)
                      ..|   +||+|....+.+
T Consensus        92 ~~~---~g~~l~V~~a~~  106 (109)
T 2err_A           92 TVV---EGRKIEVNNATA  106 (109)
T ss_dssp             CEE---TTEECEEEECCC
T ss_pred             CEE---CCEEEEEEECCC
Confidence            987   999999877654

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=98.67  E-value=4.5e-08  Score=75.98  Aligned_cols=76  Identities=17%  Similarity=0.139  Sum_probs=63.6

Q ss_pred             cccEEEEecCCCC-CCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          202 HGTLVVLENLDPS-YTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       202 ~GtlV~LqNLDps-~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      .++.|||.||.+. +|.+||+++|...+. -..+++         +.|.|||.|.+.++|+.||..||...|   +||+|
T Consensus        26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~-v~~v~i---------~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l   92 (110)
T 1wf1_A           26 INSRVFIGNLNTALVKKSDVETIFSKYGR-VAGCSV---------HKGYAFVQYSNERHARAAVLGENGRVL---AGQTL   92 (110)
T ss_dssp             CSSEEEECSCCCSSCCHHHHHHHHGGGSC-CSEEEE---------ETTEEEEECSSSHHHHHHHHHHTTCEE---TTEEC
T ss_pred             CCcEEEEeCCCcccCCHHHHHHHHHhCCC-eEEEEE---------eCCEEEEEECCHHHHHHHHHHcCCCEE---CCeEE
Confidence            4689999999999 999999999987554 223333         579999999999999999999999887   99999


Q ss_pred             eeccCCCCCC
Q 017670          281 LGSIGTPCFT  290 (368)
Q Consensus       281 ~~S~g~~~~p  290 (368)
                      ....+.+.-+
T Consensus        93 ~V~~a~~~~~  102 (110)
T 1wf1_A           93 DINMAGEPKP  102 (110)
T ss_dssp             CEEESCCCCS
T ss_pred             EEEECCCCCC
Confidence            9888764443

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.67  E-value=2.2e-08  Score=75.64  Aligned_cols=81  Identities=15%  Similarity=0.199  Sum_probs=64.0

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ...+.|||.||.+.+|.+||+++|...+... .++++ .......+.|.|||.|.+.++|+.||..||...|   +||+|
T Consensus        13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~-~~~~~-~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~---~g~~l   87 (98)
T 2cqp_A           13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIP-GSVCL-KYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI---GSRKV   87 (98)
T ss_dssp             CSSEEEEEESCCTTCCHHHHHHHTTTSCCCT-TTCEE-EECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEE---TTEEC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHcCCcc-ceEEE-EECCCCCeeeEEEEEECCHHHHHHHHHHhCCCee---CCeEE
Confidence            4568999999999999999999998765432 12222 1223345679999999999999999999999977   99999


Q ss_pred             eeccCC
Q 017670          281 LGSIGT  286 (368)
Q Consensus       281 ~~S~g~  286 (368)
                      ....+.
T Consensus        88 ~V~~a~   93 (98)
T 2cqp_A           88 KLVLGS   93 (98)
T ss_dssp             EEEESS
T ss_pred             EEEEcC
Confidence            877654

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.66  E-value=4.2e-08  Score=78.00  Aligned_cols=83  Identities=18%  Similarity=0.061  Sum_probs=65.3

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      +.++.|||.||.+.+|.+||+++|..-+... .++|+.       .-|.|||.|.+.++|..||..|+..-+.+ +||||
T Consensus        13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~-~v~i~~-------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~-~Gr~l   83 (101)
T 2cq1_A           13 APSRVLHIRKLPGEVTETEVIALGLPFGKVT-NILMLK-------GKNQAFLELATEEAAITMVNYYSAVTPHL-RNQPI   83 (101)
T ss_dssp             SCCSEEEEESCCTTCCHHHHHHTTTTTSCEE-EEEEET-------TTTEEEEEESSHHHHHHHHHHHHHSCCEE-TTEEC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEC-------CCCEEEEEECCHHHHHHHHHHhccCCceE-CCcEE
Confidence            3578999999999999999999998865543 445543       26999999999999999999986322222 89999


Q ss_pred             eeccCCCCCCCC
Q 017670          281 LGSIGTPCFTGK  292 (368)
Q Consensus       281 ~~S~g~~~~p~k  292 (368)
                      ....+....++.
T Consensus        84 ~V~~a~~~~~~~   95 (101)
T 2cq1_A           84 YIQYSNHKELKT   95 (101)
T ss_dssp             EEEECSCSSCCC
T ss_pred             EEEEcCcccCcC
Confidence            998887665554

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=98.66  E-value=6e-08  Score=80.59  Aligned_cols=92  Identities=9%  Similarity=-0.005  Sum_probs=72.9

Q ss_pred             HHHHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeec
Q 017670          196 IRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLS  275 (368)
Q Consensus       196 lr~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls  275 (368)
                      +.......+.|||.||.+.+|.+||.++|...+ .-..++++.. ..+..+.|.|||-|.+.++|..||..||+..|   
T Consensus       118 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~v~i~~~-~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~---  192 (216)
T 2qfj_A          118 LAEEARAFNRIYVASVHQDLSDDDIKSVFEAFG-KIKSATLARD-PTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDL---  192 (216)
T ss_dssp             HHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSS-CEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTTCBC---
T ss_pred             hhcccCCCcEEEEeCCCCcCCHHHHHHHHhccC-CeeEEEEEec-CCCCCcCceEEEEecCHHHHHHHHHHccCCEe---
Confidence            334466789999999999999999999998754 3444544432 22456789999999999999999999999987   


Q ss_pred             CCceeeeccCCCCCCCC
Q 017670          276 NGRPLLGSIGTPCFTGK  292 (368)
Q Consensus       276 ~GRPL~~S~g~~~~p~k  292 (368)
                      +||+|..+.+.+..+..
T Consensus       193 ~g~~i~V~~a~~~~~~~  209 (216)
T 2qfj_A          193 GGQYLRVGKAVTPPMPL  209 (216)
T ss_dssp             SSSBCEEEECSSCSSTT
T ss_pred             CCcEEEEEEecCCCCCC
Confidence            99999988887664433

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=98.66  E-value=2.2e-08  Score=75.06  Aligned_cols=79  Identities=15%  Similarity=0.129  Sum_probs=61.5

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      ..+.|||.||.+.+|.+||+++|...+... ..+++. ......+.|.|||.|.+.++|..||..||...|   +||+|.
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~~~~~~-~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~---~gr~l~   88 (95)
T 2ek1_A           14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIP-GSVCLK-YNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI---GSRKVK   88 (95)
T ss_dssp             -CEEEEEECCCTTCCHHHHHHHTTTSCBCT-TCCEEE-ECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCcc-ceEEEE-eCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeE---CCcEEE
Confidence            358999999999999999999998765432 122222 122345678999999999999999999999988   999998


Q ss_pred             eccC
Q 017670          282 GSIG  285 (368)
Q Consensus       282 ~S~g  285 (368)
                      -...
T Consensus        89 v~~a   92 (95)
T 2ek1_A           89 LSGP   92 (95)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            6543

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=98.66  E-value=2.5e-08  Score=83.10  Aligned_cols=87  Identities=8%  Similarity=-0.022  Sum_probs=67.7

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ..++.|||.||.+.+|..+|.++|...+.. ..++++. ......+.|.|||.|.+.++|..||..||...|   +|++|
T Consensus        70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i-~~v~i~~-~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l  144 (165)
T 1rk8_A           70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEI-KNIHLNL-DRRTGFSKGYALVEYETHKQALAAKEALNGAEI---MGQTI  144 (165)
T ss_dssp             C-CEEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEEE-CTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHhhcCCCE-EEEEEEe-cCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEE---CCEEE
Confidence            457899999999999999999999887643 3443332 223345679999999999999999999999877   99999


Q ss_pred             eeccCCCCCCCC
Q 017670          281 LGSIGTPCFTGK  292 (368)
Q Consensus       281 ~~S~g~~~~p~k  292 (368)
                      ....+.+..|.+
T Consensus       145 ~V~~a~~~~~~~  156 (165)
T 1rk8_A          145 QVDWCFVKGPKR  156 (165)
T ss_dssp             EEEESEECC---
T ss_pred             EEEEecCCCCCC
Confidence            988876655544

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.66  E-value=1.3e-08  Score=79.28  Aligned_cols=81  Identities=17%  Similarity=0.150  Sum_probs=64.5

Q ss_pred             HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      ....+.|||.||.+.+|.+||+++|...+.. ..++++ .......+.|.|||.|.+.++|+.|| .||+..|   +||+
T Consensus        22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~-~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~---~g~~   95 (114)
T 2cq4_A           22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKV-RDVRII-SDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRL---LGVP   95 (114)
T ss_dssp             HHHHTEEEEESCCTTCCHHHHHHHHTTTSCE-EEEEEC-CSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEE---TTEE
T ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCE-eEEEEE-ecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEe---CCeE
Confidence            4567999999999999999999999875543 334333 22333567899999999999999999 9999877   9999


Q ss_pred             eeeccCC
Q 017670          280 LLGSIGT  286 (368)
Q Consensus       280 L~~S~g~  286 (368)
                      |......
T Consensus        96 l~V~~a~  102 (114)
T 2cq4_A           96 IIVQASQ  102 (114)
T ss_dssp             EEEEEHH
T ss_pred             EEEEecC
Confidence            9866543

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=98.65  E-value=3.1e-08  Score=73.32  Aligned_cols=78  Identities=17%  Similarity=0.154  Sum_probs=60.9

Q ss_pred             HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      .+..+.|||.||.+.+|.+||+++|...+. -..++++ ....+..+.|.|||.|.+.++|+.||.. ++.-|   +||+
T Consensus         8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~v~i~-~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~---~g~~   81 (87)
T 3s7r_A            8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGE-VVDCTIK-MDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRL---DGRV   81 (87)
T ss_dssp             CSCTTEEEEECCCTTCCHHHHHHHHTTTSC-EEEEEEE-ECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEE---TTEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhCCC-EEEEEEe-ecCCCCccccEEEEEECCHHHHHHHHHh-CCCEE---CCEE
Confidence            457889999999999999999999977654 3344443 2233456788999999999999999954 66555   9999


Q ss_pred             eeec
Q 017670          280 LLGS  283 (368)
Q Consensus       280 L~~S  283 (368)
                      |...
T Consensus        82 i~v~   85 (87)
T 3s7r_A           82 IDPK   85 (87)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8754

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.65  E-value=9.8e-08  Score=72.58  Aligned_cols=81  Identities=16%  Similarity=0.093  Sum_probs=65.9

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      .++.|||.||  .+|.+||+++|...+.. ..+++       .++.|.|||.|.+.++|+.||..||...|   +||+|.
T Consensus        14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i-~~v~i-------~~~~g~afV~f~~~~~a~~Ai~~l~g~~~---~g~~l~   80 (97)
T 1x5p_A           14 KGNTLYVYGE--DMTPTLLRGAFSPFGNI-IDLSM-------DPPRNCAFVTYEKMESADQAVAELNGTQV---ESVQLK   80 (97)
T ss_dssp             CCSEEEEECS--SCCHHHHHHHHTTTSCE-EEEEE-------ETTTTEEEEEESSHHHHHHHHHHTTTEEE---TTEEEE
T ss_pred             CCCEEEEcCC--CCCHHHHHHHHhhCCCE-EEEEe-------cCCCCEEEEEECCHHHHHHHHHHhCCCeE---CCeEEE
Confidence            5689999997  89999999999876643 33333       26779999999999999999999999977   999999


Q ss_pred             eccCCCCCCCCCCc
Q 017670          282 GSIGTPCFTGKQSK  295 (368)
Q Consensus       282 ~S~g~~~~p~k~s~  295 (368)
                      ...+.+..+..+..
T Consensus        81 v~~a~~~~~~~~~~   94 (97)
T 1x5p_A           81 VNIARKQPMLDSGP   94 (97)
T ss_dssp             EECCSSCCCCCSSC
T ss_pred             EEECCCCCCCCCCC
Confidence            98887765554443

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=98.65  E-value=6.6e-08  Score=77.10  Aligned_cols=108  Identities=13%  Similarity=0.106  Sum_probs=79.1

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      .++.|||.||.+..|.+||.++|...+.. ...+++. ..-+..+.|.|||.|.+.++|..|+..|++..+   +||+|.
T Consensus         2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i-~~v~i~~-~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~---~g~~l~   76 (168)
T 1b7f_A            2 SNTNLIVNYLPQDMTDRELYALFRAIGPI-NTCRIMR-DYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITV---RNKRLK   76 (168)
T ss_dssp             CCSEEEEECCCTTCCHHHHHHHHHTTSCE-EEEECCE-ETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE---TTEECE
T ss_pred             CccEEEEeCCCCCCCHHHHHHHHHhcCCe-eEEEEEE-eCCCCccceEEEEEECCHHHHHHHHHhcCCCEe---CCcEEE
Confidence            46899999999999999999999886643 2333332 222356679999999999999999999999877   999999


Q ss_pred             eccCCCCCCCC--CCccccceehhhHHHHHHHHHHhhhc
Q 017670          282 GSIGTPCFTGK--QSKFVGHLALDKLKFQMQREMREAVS  318 (368)
Q Consensus       282 ~S~g~~~~p~k--~s~f~GHl~i~k~r~q~qrEmr~AVS  318 (368)
                      .....+.....  ..-|.|.|.-+-    ..+++++..+
T Consensus        77 v~~~~~~~~~~~~~~l~v~nl~~~~----t~~~l~~~f~  111 (168)
T 1b7f_A           77 VSYARPGGESIKDTNLYVTNLPRTI----TDDQLDTIFG  111 (168)
T ss_dssp             EEECCCCSSTTTTCEEEEESCCTTC----CHHHHHHHHT
T ss_pred             EEecCCCcccCCCCCEEEeCCCCCC----CHHHHHHhhh
Confidence            88776654433  344666665432    2355665543

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.65  E-value=2.4e-08  Score=78.60  Aligned_cols=80  Identities=19%  Similarity=0.138  Sum_probs=63.6

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ...+.|||.||.+.+|.+||+++|...+.....++|+.. . +..+.|.|||.|.+.++|+.||.. |...|   +||+|
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d-~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~---~gr~i   86 (114)
T 2cpy_A           13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVD-N-NGQGLGQALVQFKNEDDARKSERL-HRKKL---NGREA   86 (114)
T ss_dssp             SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCC-T-TSSCSSCEEEECSSHHHHHHHGGG-CSEEE---TTEEE
T ss_pred             CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEEC-C-CCCcceEEEEEECCHHHHHHHHHh-CCCcc---CCeEE
Confidence            457899999999999999999999876433233444433 2 567899999999999999999998 77666   99999


Q ss_pred             eeccCC
Q 017670          281 LGSIGT  286 (368)
Q Consensus       281 ~~S~g~  286 (368)
                      ......
T Consensus        87 ~v~~a~   92 (114)
T 2cpy_A           87 FVHVVT   92 (114)
T ss_dssp             EEEEEC
T ss_pred             EEEECC
Confidence            866554

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.64  E-value=4e-08  Score=72.24  Aligned_cols=73  Identities=21%  Similarity=0.198  Sum_probs=59.3

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhh-ccceeeecCCce
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKL-EEGCLLLSNGRP  279 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kl-n~~cL~ls~GRP  279 (368)
                      ...+.|||.||.+.+|.+||+++|...+.. ...+++.       +-|.|||.|.+.++|..|+..| |...+   +||+
T Consensus        10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i-~~~~~~~-------~kg~afV~f~~~~~A~~a~~~l~~~~~~---~g~~   78 (85)
T 2ytc_A           10 KTITTLYVGGLGDTITETDLRNHFYQFGEI-RTITVVQ-------RQQCAFIQFATRQAAEVAAEKSFNKLIV---NGRR   78 (85)
T ss_dssp             SSCCCEEEECCTTTSCHHHHHHHHHTTSCE-EEEEEEG-------GGTEEEEEESSHHHHHHHHHTTTTTCEE---TTEE
T ss_pred             CCccEEEEcCCCCCCCHHHHHHHHHhCCCE-eEEEEEC-------CCCEEEEEECCHHHHHHHHHHhcCCeeE---CCCE
Confidence            456889999999999999999999876543 3344443       3689999999999999999999 66555   8999


Q ss_pred             eeecc
Q 017670          280 LLGSI  284 (368)
Q Consensus       280 L~~S~  284 (368)
                      |....
T Consensus        79 l~v~~   83 (85)
T 2ytc_A           79 LNVKW   83 (85)
T ss_dssp             CCEEE
T ss_pred             EEEEe
Confidence            87554

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.64  E-value=5.7e-08  Score=73.93  Aligned_cols=78  Identities=21%  Similarity=0.206  Sum_probs=64.6

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ...+.|||.||.+.+|.+||+++|.+.+.. ...+++       ++-|.|||.|.+.++|+.||..||+..|   +||+|
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~~~-------~~kg~afV~f~~~~~a~~a~~~l~g~~~---~g~~l   81 (99)
T 2cpj_A           13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKA-GEVFIH-------KDKGFGFIRLETRTLAEIAKVELDNMPL---RGKQL   81 (99)
T ss_dssp             CCTTEEEEESCCTTCCHHHHHHHTSTTCCC-SEEEEE-------TTTTEEEEECSSSHHHHHHHHHHTTCCB---TTBCC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhhcCCe-EEEEEe-------cCCCEEEEEECCHHHHHHHHHHhCCCEe---CCceE
Confidence            456899999999999999999999886543 333333       2369999999999999999999999887   99999


Q ss_pred             eeccCCCCC
Q 017670          281 LGSIGTPCF  289 (368)
Q Consensus       281 ~~S~g~~~~  289 (368)
                      ....+.+..
T Consensus        82 ~v~~a~~~~   90 (99)
T 2cpj_A           82 RVRFACHSA   90 (99)
T ss_dssp             EEEESSCCS
T ss_pred             EEEEcCCCC
Confidence            988776543

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=98.64  E-value=5.2e-08  Score=77.11  Aligned_cols=107  Identities=19%  Similarity=0.191  Sum_probs=78.5

Q ss_pred             ccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670          203 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG  282 (368)
Q Consensus       203 GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~  282 (368)
                      .|.|||.||.+.+|.+||.++|...+.. ...+++. ...++.+.|.|||.|.+.++|..|+..||+..+   +||||..
T Consensus         2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i-~~v~~~~-~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~---~g~~l~v   76 (167)
T 1fxl_A            2 KTNLIVNYLPQNMTQEEFRSLFGSIGEI-ESCKLVR-DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL---QTKTIKV   76 (167)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHTTSCE-EEEEEEE-CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred             cceEEEcCCCCCCCHHHHHHHHHhcCCe-EEEEEEe-CCCCCcceeEEEEEECCHHHHHHHHHHcCCCcc---CCceEEE
Confidence            5889999999999999999999986643 3344433 233456679999999999999999999999877   9999998


Q ss_pred             ccCCCCCCC--CCCccccceehhhHHHHHHHHHHhhhc
Q 017670          283 SIGTPCFTG--KQSKFVGHLALDKLKFQMQREMREAVS  318 (368)
Q Consensus       283 S~g~~~~p~--k~s~f~GHl~i~k~r~q~qrEmr~AVS  318 (368)
                      ....+..+.  ...-|+|.|.-+-    ..+++++..+
T Consensus        77 ~~~~~~~~~~~~~~l~v~nl~~~~----t~~~l~~~f~  110 (167)
T 1fxl_A           77 SYARPSSASIRDANLYVSGLPKTM----TQKELEQLFS  110 (167)
T ss_dssp             EECCCCCGGGTTCEEEEESCCTTC----CHHHHHHHHG
T ss_pred             EecCCCcccCCCCcEEECCCCCcC----CHHHHHHHHH
Confidence            877655432  2445667665432    2345555444

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=98.64  E-value=5.5e-08  Score=76.70  Aligned_cols=78  Identities=13%  Similarity=0.107  Sum_probs=64.9

Q ss_pred             HHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCC
Q 017670          198 VAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG  277 (368)
Q Consensus       198 ~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G  277 (368)
                      .....++.|||.||.+.+|.+||+++|...+.. ..++++         .|.|||.|.+.++|..||..||+..+   +|
T Consensus        26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i-~~v~i~---------kg~afV~f~~~~~A~~Ai~~l~g~~~---~g   92 (108)
T 2jvo_A           26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPM-KEVKIL---------NGFAFVEFEEAESAAKAIEEVHGKSF---AN   92 (108)
T ss_dssp             --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCC-CEEEEE---------TTEEEEECSSHHHHHHHHHHHTTCEE---TT
T ss_pred             CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCE-EEEEEE---------CCEEEEEECCHHHHHHHHHHcCCCEE---CC
Confidence            345678999999999999999999999886643 333343         69999999999999999999999987   99


Q ss_pred             ceeeeccCCCC
Q 017670          278 RPLLGSIGTPC  288 (368)
Q Consensus       278 RPL~~S~g~~~  288 (368)
                      |+|....+.+.
T Consensus        93 ~~l~V~~a~~~  103 (108)
T 2jvo_A           93 QPLEVVYSKLP  103 (108)
T ss_dssp             EECEEESCSCC
T ss_pred             eEEEEEEecCC
Confidence            99998777654

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=98.64  E-value=2.7e-08  Score=74.71  Aligned_cols=72  Identities=15%  Similarity=0.158  Sum_probs=60.4

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      .++.|||.||.+.+|.+||+++|.+.  .-..+++.       .+-|.|||.|.+.++|+.||..||...+   +||+|.
T Consensus         4 ~~~~l~V~nLp~~~t~~~l~~~F~~~--~v~~~~i~-------~~~g~afV~f~~~~~a~~Ai~~l~g~~~---~g~~l~   71 (88)
T 1wg1_A            4 GSSGILVKNLPQDSNCQEVHDLLKDY--DLKYCYVD-------RNKRTAFVTLLNGEQAQNAIQMFHQYSF---RGKDLI   71 (88)
T ss_dssp             CCCCEEEESCCSSCCHHHHHHHTCSS--CCCCEEEE-------GGGTEEEECCSCHHHHHHHHHHHTTEEE---TTEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhhC--CeEEEEEe-------CCCcEEEEEECCHHHHHHHHHHhCCCeE---CCcEEE
Confidence            46789999999999999999998765  33333331       6679999999999999999999999887   999998


Q ss_pred             eccC
Q 017670          282 GSIG  285 (368)
Q Consensus       282 ~S~g  285 (368)
                      ...+
T Consensus        72 V~~a   75 (88)
T 1wg1_A           72 VQLQ   75 (88)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            7654

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.63  E-value=5.9e-08  Score=77.31  Aligned_cols=81  Identities=16%  Similarity=0.084  Sum_probs=64.6

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      -.+.|||.||.+.+|.+||+++|..-+... .++|++       .-|.|||.|.+.++|..||..|+..-+.+ +||||.
T Consensus        14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~-~v~i~~-------~kg~aFVef~~~~~A~~Ai~~l~~~~~~i-~Gr~l~   84 (104)
T 1wex_A           14 VSPVVHVRGLCESVVEADLVEALEKFGTIC-YVMMMP-------FKRQALVEFENIDSAKECVTFAADVPVYI-AGQQAF   84 (104)
T ss_dssp             CCSEEEEESCCSSCCHHHHHHHHTTTSCEE-EEEEET-------TTTEEEEEESSHHHHHHHHHHHHHSCCBS-SSSBCE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEEC-------CCCEEEEEECCHHHHHHHHHHhccCCceE-CCEEEE
Confidence            368999999999999999999998866543 455554       25899999999999999999997643323 999999


Q ss_pred             eccCCCCCCC
Q 017670          282 GSIGTPCFTG  291 (368)
Q Consensus       282 ~S~g~~~~p~  291 (368)
                      ...+......
T Consensus        85 V~~a~~~~~~   94 (104)
T 1wex_A           85 FNYSTSKRIT   94 (104)
T ss_dssp             EEECSSSSCC
T ss_pred             EEEccCcccc
Confidence            8887655443

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=98.63  E-value=4.5e-08  Score=77.44  Aligned_cols=81  Identities=16%  Similarity=0.164  Sum_probs=64.8

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ..++.|+|.||.+.+|.+||.++|...+.. ..++++. ......+.|.|||-|.+.++|..|+..||+..+   +||+|
T Consensus        85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i-~~~~i~~-~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~i  159 (166)
T 3md3_A           85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSY-LSGHVMW-DMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL---NGRPL  159 (166)
T ss_dssp             TTCEEEEEESCCTTCCHHHHHHHHTTSTTE-EEEEEEE-CTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE---TTEEC
T ss_pred             CCCceEEECCCCCCCCHHHHHHHHhccCCe-eEEEEEe-cCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc---CCcEE
Confidence            357789999999999999999999775543 3343332 223356788999999999999999999999987   99999


Q ss_pred             eeccCC
Q 017670          281 LGSIGT  286 (368)
Q Consensus       281 ~~S~g~  286 (368)
                      ..+.+.
T Consensus       160 ~v~~a~  165 (166)
T 3md3_A          160 RINWAA  165 (166)
T ss_dssp             EEEESC
T ss_pred             EEEecC
Confidence            877653

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.62  E-value=9e-08  Score=72.56  Aligned_cols=78  Identities=10%  Similarity=0.034  Sum_probs=63.4

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecC--Cce
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN--GRP  279 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~--GRP  279 (368)
                      ..+.|||.||.+.+|.+||+++|...+... .++++.       .-|.|||.|.+.++|+.||..||...|   +  ||+
T Consensus        16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~-~v~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~---~~~g~~   84 (97)
T 1why_A           16 PTTRLWVGGLGPNTSLAALAREFDRFGSIR-TIDHVK-------GDSFAYIQYESLDAAQAACAKMRGFPL---GGPDRR   84 (97)
T ss_dssp             CCSCEEEECCCSSCCHHHHHHHHHTTSCEE-EEEECS-------SSCCEEEEESSHHHHHHHHHHHTTCBC---SSSSCB
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEeC-------CCCEEEEEECCHHHHHHHHHHHCCCEe---CCCCcE
Confidence            357899999999999999999998866432 233332       268999999999999999999999876   7  999


Q ss_pred             eeeccCCCCCC
Q 017670          280 LLGSIGTPCFT  290 (368)
Q Consensus       280 L~~S~g~~~~p  290 (368)
                      |....+.+..+
T Consensus        85 l~V~~a~~~~~   95 (97)
T 1why_A           85 LRVDFAKSGPS   95 (97)
T ss_dssp             CEEEECCCCCC
T ss_pred             EEEEECCCCCC
Confidence            99887766443

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.62  E-value=4.5e-08  Score=75.91  Aligned_cols=80  Identities=16%  Similarity=0.128  Sum_probs=63.1

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ..++.|||.||.+..|.+||+++|...+......+|+ .. .+..+.|.|||.|.+.++|+.||.. |...|   +||+|
T Consensus        13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~-~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~---~gr~i   86 (104)
T 1wg5_A           13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLP-VD-FQGRSTGEAFVQFASQEIAEKALKK-HKERI---GHRYI   86 (104)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECC-BC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCS---SSSCC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEE-EC-CCCCcceEEEEEECCHHHHHHHHHh-Ccchh---CCcEE
Confidence            4578999999999999999999998866543223333 22 4568889999999999999999998 77666   99998


Q ss_pred             eeccCC
Q 017670          281 LGSIGT  286 (368)
Q Consensus       281 ~~S~g~  286 (368)
                      .-....
T Consensus        87 ~v~~~~   92 (104)
T 1wg5_A           87 EIFKSS   92 (104)
T ss_dssp             EEEEEC
T ss_pred             EEEECC
Confidence            754443

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=98.62  E-value=4.5e-08  Score=78.76  Aligned_cols=83  Identities=14%  Similarity=0.169  Sum_probs=67.0

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccc-eecccCCcccCCCCCceEEEEEechHHHHHHHHhhccc----eeeec
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENC-SAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEG----CLLLS  275 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c-~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~----cL~ls  275 (368)
                      +.++.|||.||.+.+|.+||+++|...+.... .++++ .......+-|.|||.|.+. +|..||..||+.    .|   
T Consensus        21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~-~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~---   95 (131)
T 2m2b_A           21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVI-KDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI---   95 (131)
T ss_dssp             CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECC-BCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG---
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEE-EcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC---
Confidence            45688999999999999999999987765543 14333 3444567789999999999 999999999998    66   


Q ss_pred             CCceeeeccCCCC
Q 017670          276 NGRPLLGSIGTPC  288 (368)
Q Consensus       276 ~GRPL~~S~g~~~  288 (368)
                      +||+|....+.+.
T Consensus        96 ~gr~l~V~~a~~~  108 (131)
T 2m2b_A           96 DGKTINVEFAKGS  108 (131)
T ss_dssp             GGCCCCCEECCCS
T ss_pred             CCEEEEEEECCCC
Confidence            9999997776554

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.62  E-value=5.6e-08  Score=80.48  Aligned_cols=84  Identities=18%  Similarity=0.120  Sum_probs=67.0

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      +.++.|||.||.+.+|.+||+++|..-+. -..++|+..       -|.|||-|.+.++|..||..|+..-+.+ +||||
T Consensus        29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~-V~~v~i~~~-------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l-~Gr~l   99 (119)
T 2ad9_A           29 VPSRVIHIRKLPIDVTEGEVISLGLPFGK-VTNLLMLKG-------KNQAFIEMNTEEAANTMVNYYTSVTPVL-RGQPI   99 (119)
T ss_dssp             SCCSEEEEESCCTTCCHHHHHHHHTTTSC-CCEEEEEGG-------GTEEEEECSCHHHHHHHHHHHHHHCCCB-TTBCC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEeCC-------CCEEEEEECCHHHHHHHHHHhccCCceE-CCeEE
Confidence            45789999999999999999999987554 445555532       4999999999999999999998531112 89999


Q ss_pred             eeccCCCCCCCCC
Q 017670          281 LGSIGTPCFTGKQ  293 (368)
Q Consensus       281 ~~S~g~~~~p~k~  293 (368)
                      ....+.+..++..
T Consensus       100 ~V~~a~~k~~~~~  112 (119)
T 2ad9_A          100 YIQFSNHKELKTD  112 (119)
T ss_dssp             EEEECSSSSCCCC
T ss_pred             EEEEccCCCCCcc
Confidence            9998877766653

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=98.62  E-value=4.9e-08  Score=79.11  Aligned_cols=76  Identities=14%  Similarity=0.196  Sum_probs=64.5

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      .++.|||.||.+..|.+||.++|...+    ..+.+   ..+..+.|.|||-|.+.++|..||..||+..|   +||+|.
T Consensus        98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g----~v~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~i~  167 (175)
T 1fje_B           98 AARTLLAKNLSFNITEDELKEVFEDAL----EIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI---DGRSVS  167 (175)
T ss_dssp             GGGEEEEESCCSSCCHHHHHHHCTTCS----EEEEE---CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEE---TTEEEE
T ss_pred             cCCEEEEeCCCCCCCHHHHHHHHHhcC----eEEEe---cCCCCCceEEEEEECCHHHHHHHHHHhCCCEE---CCeEEE
Confidence            578999999999999999999988743    33333   44457889999999999999999999999877   999999


Q ss_pred             eccCCC
Q 017670          282 GSIGTP  287 (368)
Q Consensus       282 ~S~g~~  287 (368)
                      .+.+.+
T Consensus       168 v~~a~~  173 (175)
T 1fje_B          168 LYYTGE  173 (175)
T ss_dssp             EEECSS
T ss_pred             EEecCC
Confidence            887654

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=98.61  E-value=6.8e-08  Score=75.03  Aligned_cols=78  Identities=13%  Similarity=0.037  Sum_probs=63.1

Q ss_pred             cccEEEEecCCCCC------CchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeec
Q 017670          202 HGTLVVLENLDPSY------TSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLS  275 (368)
Q Consensus       202 ~GtlV~LqNLDps~------ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls  275 (368)
                      .++.|||.||.+..      |.++|+++|...+.. ..++|+ +  -+..+-|.|||.|.+.++|..||..||+..|   
T Consensus        14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v-~~v~i~-~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~---   86 (105)
T 2nlw_A           14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKI-TNDFYP-E--EDGKTKGYIFLEYASPAHAVDAVKNADGYKL---   86 (105)
T ss_dssp             CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCE-EEEECC-C--BTTBSCCEEEEEECSSSHHHHHHHHCSSEEC---
T ss_pred             CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCE-EEEEee-C--CCCCeeeEEEEEECCHHHHHHHHHHhCCccc---
Confidence            36899999999988      668899999875543 334444 2  3457789999999999999999999999888   


Q ss_pred             CCc-eeeeccCC
Q 017670          276 NGR-PLLGSIGT  286 (368)
Q Consensus       276 ~GR-PL~~S~g~  286 (368)
                      +|| +|....+.
T Consensus        87 ~g~~~l~V~~a~   98 (105)
T 2nlw_A           87 DKQHTFRVNLFT   98 (105)
T ss_dssp             STTCEEEEECSC
T ss_pred             CCCceEEEEEcc
Confidence            999 99877664

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=98.61  E-value=1.2e-07  Score=78.30  Aligned_cols=78  Identities=18%  Similarity=0.324  Sum_probs=61.0

Q ss_pred             hcccEEEEecCCCCCCchHHHH----HHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecC
Q 017670          201 EHGTLVVLENLDPSYTSTVVED----LVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN  276 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVed----Li~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~  276 (368)
                      +.++.|||.||++.++.+|+++    +|...+.. ....+ .   .+...-|.|||.|.+.++|+.||..||+..|   +
T Consensus        27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I-~~v~i-~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l---~   98 (127)
T 2a3j_A           27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDI-LDIVV-D---LSDDNSGKAYIVFATQESAQAFVEAFQGYPF---Q   98 (127)
T ss_dssp             SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCE-EEEEE-C---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCC---T
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCe-EEEEe-c---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEe---C
Confidence            4478999999999999999885    45444433 22322 1   2356789999999999999999999999987   9


Q ss_pred             CceeeeccCC
Q 017670          277 GRPLLGSIGT  286 (368)
Q Consensus       277 GRPL~~S~g~  286 (368)
                      ||||....+.
T Consensus        99 gr~l~V~~a~  108 (127)
T 2a3j_A           99 GNPLVITFSE  108 (127)
T ss_dssp             TSCCEEEECC
T ss_pred             CCEEEEEEcc
Confidence            9999877654

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=98.60  E-value=2.2e-08  Score=77.40  Aligned_cols=80  Identities=14%  Similarity=0.058  Sum_probs=65.0

Q ss_pred             cccEEEEecCCC------CCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeec
Q 017670          202 HGTLVVLENLDP------SYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLS  275 (368)
Q Consensus       202 ~GtlV~LqNLDp------s~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls  275 (368)
                      .++.|||.||.+      ..+.++|+++|...+.. ..+++ +.......+-|.|||.|.+.++|..||..||...|   
T Consensus         5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i-~~v~i-~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~---   79 (100)
T 3ns6_A            5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKV-VNMEF-PIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL---   79 (100)
T ss_dssp             GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCE-EEEEC-CEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS---
T ss_pred             cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCE-eEEEE-EEcCCCCccceEEEEEECCHHHHHHHHHHhCCccc---
Confidence            478999999999      99999999999876643 34433 33444456789999999999999999999999987   


Q ss_pred             CC-ceeeeccCC
Q 017670          276 NG-RPLLGSIGT  286 (368)
Q Consensus       276 ~G-RPL~~S~g~  286 (368)
                      +| |+|..+.+.
T Consensus        80 ~g~r~l~V~~a~   91 (100)
T 3ns6_A           80 DLKHRLFLYTMK   91 (100)
T ss_dssp             SSSCBCEEEESH
T ss_pred             CCCeEEEEEECc
Confidence            88 999877654

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.60  E-value=1e-07  Score=74.43  Aligned_cols=85  Identities=13%  Similarity=0.072  Sum_probs=66.3

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      +..+.|||.||.+.+|.+||+++|...+.. ..++++ .......+.|.|||.|.+.++|..||.. |...|   +||+|
T Consensus        25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~i~-~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~---~g~~l   98 (116)
T 1x4b_A           25 EQFRKLFIGGLSFETTEESLRNYYEQWGKL-TDCVVM-RDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSI---DGRVV   98 (116)
T ss_dssp             HHHTEEEEECCTTCCCHHHHHHHHTSSCCC-SEEEEE-CCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEE---TTEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEE-ECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEE---CCEEE
Confidence            456899999999999999999999765443 334333 2233356789999999999999999998 66655   99999


Q ss_pred             eeccCCCCCCC
Q 017670          281 LGSIGTPCFTG  291 (368)
Q Consensus       281 ~~S~g~~~~p~  291 (368)
                      ....+.+....
T Consensus        99 ~V~~a~~~~~~  109 (116)
T 1x4b_A           99 EPKRAVAREES  109 (116)
T ss_dssp             EEECCSSCCCC
T ss_pred             EEEECCCCccC
Confidence            98887665443

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=98.60  E-value=1.7e-07  Score=75.23  Aligned_cols=109  Identities=11%  Similarity=0.101  Sum_probs=76.2

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhcc-cee---cccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecC
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKEN-CSA---KMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN  276 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~-c~A---kmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~  276 (368)
                      +..+.|||.||.+.+|.+||+++|...+... |..   ..|.... ..++.|.|||.|.+.++|..|| .||+..+   +
T Consensus         2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~-~~~~~g~afV~f~~~~~A~~A~-~~~~~~~---~   76 (172)
T 2g4b_A            2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQ-INQDKNFAFLEFRSVDETTQAM-AFDGIIF---Q   76 (172)
T ss_dssp             CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEE-EETTTTEEEEEESSHHHHHHHG-GGTTCEE---T
T ss_pred             CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeE-ecCCCCEEEEEeCCHHHHHHHH-HhCCcEe---c
Confidence            5678999999999999999999999986331 110   0111111 1355899999999999999999 8998877   9


Q ss_pred             CceeeeccCCCCCCCC--CCccccceehhhHHHHHHHHHHhhhc
Q 017670          277 GRPLLGSIGTPCFTGK--QSKFVGHLALDKLKFQMQREMREAVS  318 (368)
Q Consensus       277 GRPL~~S~g~~~~p~k--~s~f~GHl~i~k~r~q~qrEmr~AVS  318 (368)
                      ||+|.........+..  ..-|.|.|.-+-    ..+++++..+
T Consensus        77 g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~----t~~~l~~~f~  116 (172)
T 2g4b_A           77 GQSLKIRRPHDYQPLPGAHKLFIGGLPNYL----NDDQVKELLT  116 (172)
T ss_dssp             TEECEEECCSSCCCCTTTTCEEEECCCTTC----CHHHHHHHHH
T ss_pred             CceeeecCCcccCCCCCCCEEEEEcCCCcC----CHHHHHHHHH
Confidence            9999987765543332  445677665543    2345555443

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=98.59  E-value=1e-07  Score=68.52  Aligned_cols=72  Identities=14%  Similarity=0.098  Sum_probs=57.4

Q ss_pred             EEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeec
Q 017670          206 VVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS  283 (368)
Q Consensus       206 V~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S  283 (368)
                      |||.||.+..|.+||+++|...+.. ...+ |+...-+..+.|.|||.|.+.++|+.||.. ++..+   +||+|...
T Consensus         2 l~v~nLp~~~t~~~l~~~F~~~G~i-~~v~-i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~---~g~~l~v~   73 (75)
T 1iqt_A            2 IFVGGLSPDTPEEKIREYFGGFGEV-ESIE-LPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNV---GLSKCEIK   73 (75)
T ss_dssp             EEESCCCSSCCHHHHHHHHHHHSCC-SEEC-CCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCB---TTBCCCEE
T ss_pred             EEEeCCCCCCCHHHHHHHHHhcCCe-EEEE-EEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeE---CCEEEEEE
Confidence            7999999999999999999987653 2333 333344467889999999999999999996 66555   99998654

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.58  E-value=1.8e-08  Score=80.15  Aligned_cols=80  Identities=18%  Similarity=0.093  Sum_probs=62.2

Q ss_pred             HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      .+.++.|||.||.+.+|.+||+++|...+... .+.+|.. ..+..+.|.|||.|.+.++|+.||. ||...|   +||+
T Consensus        22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~-~~~~~~~-~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~---~gr~   95 (124)
T 1wel_A           22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVE-DSIYIAY-GPNGKATGEGFVEFRNEADYKAALC-RHKQYM---GNRF   95 (124)
T ss_dssp             CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCT-TTCEEEE-CTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCS---TTSC
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcc-ceEEEEE-CCCCCCCeEEEEEECCHHHHHHHHH-hCCCeE---CCcE
Confidence            35679999999999999999999997755432 2222221 2245678999999999999999999 998877   9999


Q ss_pred             eeeccC
Q 017670          280 LLGSIG  285 (368)
Q Consensus       280 L~~S~g  285 (368)
                      |.....
T Consensus        96 i~V~~a  101 (124)
T 1wel_A           96 IQVHPI  101 (124)
T ss_dssp             BEEEEE
T ss_pred             EEEEEC
Confidence            985544

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=98.57  E-value=1.4e-07  Score=72.73  Aligned_cols=78  Identities=8%  Similarity=0.040  Sum_probs=62.3

Q ss_pred             HHHHHhcccEEEEecCCC-CCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeee
Q 017670          196 IRVAHEHGTLVVLENLDP-SYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLL  274 (368)
Q Consensus       196 lr~A~E~GtlV~LqNLDp-s~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~l  274 (368)
                      .......++.|||.||.+ .+|.+||+++|...+.. ..+++         ..|.|||.|.+.++|..||..||+..|  
T Consensus        15 ~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v-~~v~i---------~~g~afV~f~~~~~A~~Ai~~l~g~~~--   82 (97)
T 2xnq_A           15 VPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHI-MQINI---------KNAFGFIQFDNPQSVRDAIEXESQEMN--   82 (97)
T ss_dssp             ----CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCE-EEEEE---------CSSEEEEEESSHHHHHHHHHHHTTSEE--
T ss_pred             ccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCE-EEEEE---------eCCEEEEEECCHHHHHHHHHHcCCCEE--
Confidence            344466789999999999 99999999999886543 23333         269999999999999999999999977  


Q ss_pred             cCCceeeeccCC
Q 017670          275 SNGRPLLGSIGT  286 (368)
Q Consensus       275 s~GRPL~~S~g~  286 (368)
                       +||+|....+.
T Consensus        83 -~g~~l~V~~a~   93 (97)
T 2xnq_A           83 -FGKKLILEVSS   93 (97)
T ss_dssp             -TTEECEEEECC
T ss_pred             -CCEEEEEEecC
Confidence             89999876543

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=98.57  E-value=1.4e-07  Score=74.67  Aligned_cols=104  Identities=14%  Similarity=0.180  Sum_probs=75.7

Q ss_pred             cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeec
Q 017670          204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS  283 (368)
Q Consensus       204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S  283 (368)
                      +.|||.||.+..|.+||+++|...+. -...+++...  +..+.|.|||-|.+.++|..|+..||+..+   +||+|...
T Consensus         1 R~l~V~nlp~~~t~~~l~~~f~~~G~-i~~v~i~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~---~g~~i~v~   74 (166)
T 3md3_A            1 RVLYVGNLDKAITEDILKQYFQVGGP-IANIKIMIDK--NNKNVNYAFVEYHQSHDANIALQTLNGKQI---ENNIVKIN   74 (166)
T ss_dssp             CEEEEEEEETTCCHHHHHHHHGGGSC-EEEEEEECCC--C-CCEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEEE
T ss_pred             CEEEECCCCCcCCHHHHHHHHHhcCC-eEEEEEEECC--CCCCCCEEEEEeCCHHHHHHHHHHcCCCcc---CCCeeEEE
Confidence            57999999999999999999987664 3344444332  246789999999999999999999999988   99999887


Q ss_pred             cCCCCCCCC----CCccccceehhhHHHHHHHHHHhhh
Q 017670          284 IGTPCFTGK----QSKFVGHLALDKLKFQMQREMREAV  317 (368)
Q Consensus       284 ~g~~~~p~k----~s~f~GHl~i~k~r~q~qrEmr~AV  317 (368)
                      ...+..+..    ..-|.|.|.-+-    ..+++++..
T Consensus        75 ~~~~~~~~~~~~~~~l~v~nl~~~~----t~~~l~~~f  108 (166)
T 3md3_A           75 WAFQSQQSSSDDTFNLFVGDLNVNV----DDETLRNAF  108 (166)
T ss_dssp             ECCCCCCCCCTTCEEEEEESCCTTC----CHHHHHHHH
T ss_pred             EcCCCCCCCCCCCceEEECCCCCCC----CHHHHHHHH
Confidence            765543322    234556554332    235555554

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=98.57  E-value=6.1e-08  Score=75.52  Aligned_cols=78  Identities=9%  Similarity=-0.023  Sum_probs=60.7

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhc--cceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCc
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKE--NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR  278 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke--~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GR  278 (368)
                      ..++.|||.||.+..|.+||+++|...+..  --.++++ ...- ..+.|.|||.|.+.++|..||. +|...|   +||
T Consensus         9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~-~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~---~gr   82 (107)
T 2lmi_A            9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFL-LNRD-GKRRGDALIEMESEQDVQKALE-KHRMYM---GQR   82 (107)
T ss_dssp             SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECC-CCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCS---SSS
T ss_pred             CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEE-ECCC-CCEeeEEEEEECCHHHHHHHHH-hCccee---CCe
Confidence            568899999999999999999999875431  1122232 2222 6788999999999999999999 888766   999


Q ss_pred             eeeecc
Q 017670          279 PLLGSI  284 (368)
Q Consensus       279 PL~~S~  284 (368)
                      +|.-..
T Consensus        83 ~i~V~~   88 (107)
T 2lmi_A           83 YVEVYE   88 (107)
T ss_dssp             CCCCEE
T ss_pred             EEEEEE
Confidence            987443

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=98.56  E-value=1.6e-07  Score=78.04  Aligned_cols=85  Identities=15%  Similarity=0.052  Sum_probs=66.9

Q ss_pred             HHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCC
Q 017670          198 VAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG  277 (368)
Q Consensus       198 ~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G  277 (368)
                      .+.+..+.|||.||.+.+|.+||.++|...+.. ..++++ +...+..+.|.|||.|.+.++|..||..||+..|   +|
T Consensus        23 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i-~~v~i~-~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~---~g   97 (216)
T 2qfj_A           23 GALAIMSRVYVGSIYYELGEDTIRQAFAPFGPI-KSIDMS-WDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVML---GG   97 (216)
T ss_dssp             HHHHHHTEEEEECCCTTCCHHHHHHHHGGGSCE-EEEEEC-CC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCC---C-
T ss_pred             cccCcCCEEEEECCCCCCCHHHHHHHHHhCCCE-EEEEEe-ecCCCCccCceEEEEeCCHHHHHHHHHHccCCee---CC
Confidence            457788999999999999999999999876643 334433 2333467889999999999999999999999877   99


Q ss_pred             ceeeeccCCC
Q 017670          278 RPLLGSIGTP  287 (368)
Q Consensus       278 RPL~~S~g~~  287 (368)
                      |+|.......
T Consensus        98 ~~l~v~~~~~  107 (216)
T 2qfj_A           98 RNIKVGRPSN  107 (216)
T ss_dssp             CCCEEECCSC
T ss_pred             eeEEEecCCC
Confidence            9998765543

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=98.55  E-value=1.3e-07  Score=74.84  Aligned_cols=68  Identities=24%  Similarity=0.254  Sum_probs=56.0

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ..++.|||.||.+.+|.+||+++|...+ +-..++++..        |.|||.|.+.++|+.||..||..-|   +||++
T Consensus        14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G-~v~~~~i~~~--------g~afV~f~~~~~a~~Ai~~l~g~~~---~gr~~   81 (115)
T 3beg_B           14 RSENRVVVSGLPPSGSWQDLKDHMREAG-DVCYADVYRD--------GTGVVEFVRKEDMTYAVRKLDNTKF---RSHEG   81 (115)
T ss_dssp             ---CCEEEEECCSSCCTTHHHHHHGGGS-CEEEEEECTT--------SEEEEEESSHHHHHHHHHHHTTCBC---CCTTS
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecC--------CEEEEEECCHHHHHHHHHHhCCCEE---CCcEe
Confidence            3578999999999999999999998765 3444544332        9999999999999999999999988   99984

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.53  E-value=9.7e-08  Score=76.81  Aligned_cols=77  Identities=13%  Similarity=0.043  Sum_probs=61.0

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ..++.|||.||.+..|.+||+++|... . -..++++-. . ..++.|.|||.|.+.++|+.|| .+|...|   +||+|
T Consensus        14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~-v~~v~i~~d-~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~---~gr~i   85 (109)
T 2dnn_A           14 PDDLYVSVHGMPFSAMENDVRDFFHGL-R-VDAVHLLKD-H-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLM---IQRYV   85 (109)
T ss_dssp             HHHHEEEEECCCSSCCHHHHHHHTTTS-C-CCEEEECCC-T-TCCCCSEEEEECSSHHHHHHHH-HTTTEEE---TTEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHhccC-C-eeEEEEEEC-C-CCCCCeEEEEEECCHHHHHHHH-hcCCCeE---CCeEE
Confidence            346799999999999999999999875 3 234444322 2 2678899999999999999999 7888777   99998


Q ss_pred             eeccC
Q 017670          281 LGSIG  285 (368)
Q Consensus       281 ~~S~g  285 (368)
                      .-...
T Consensus        86 ~V~~a   90 (109)
T 2dnn_A           86 EVSPA   90 (109)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            75443

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=98.53  E-value=2.3e-07  Score=74.12  Aligned_cols=82  Identities=11%  Similarity=0.098  Sum_probs=65.1

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ...+.|||.||.+.+|.+||.++|...+ .-..++++.. ..+..+.|.|||-|.+.++|..|+. ++...+   +||+|
T Consensus        85 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~---~g~~i  158 (167)
T 2cjk_A           85 DKTGKIFVGGIGPDVRPKEFEEFFSQWG-TIIDAQLMLD-KDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDF---KDRKI  158 (167)
T ss_dssp             HHCEEEEEEEECTTCCHHHHHHHHHTTS-CCSEEECCCS-SSSSTTSEEEEEEESSHHHHHHHHH-CSEECS---SSSCE
T ss_pred             cCCCeEEECCCCCCCCHHHHHHHHHhCc-cEEEEEEEEc-CCCCccceEEEEEECCHHHHHHHHh-CCCEEe---CCeEE
Confidence            4577899999999999999999998754 3444544332 3346788999999999999999998 766555   99999


Q ss_pred             eeccCCCC
Q 017670          281 LGSIGTPC  288 (368)
Q Consensus       281 ~~S~g~~~  288 (368)
                      ....+.|.
T Consensus       159 ~V~~a~pk  166 (167)
T 2cjk_A          159 EIKRAEPR  166 (167)
T ss_dssp             EEEECCCC
T ss_pred             EEeecCCC
Confidence            98877654

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.53  E-value=1.4e-07  Score=74.54  Aligned_cols=76  Identities=16%  Similarity=0.135  Sum_probs=61.1

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ..++.|||.||.+..|.+||+++|...+.. ..++|+... - ..+-|.|||.|.+.++|..||. +|..-|   +||+|
T Consensus         9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v-~~v~i~~d~-~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~---~gr~l   81 (103)
T 1s79_A            9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQV-LNIQMRRTL-H-KAFKGSIFVVFDSIESAKKFVE-TPGQKY---KETDL   81 (103)
T ss_dssp             SGGGCEEEECCCTTCCHHHHHHHHHTSSCE-EEEEEECCC-T-TSCCCEEEEEESSHHHHHHHHT-SSCCCC---TTTTC
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHhhcCCE-EEEEEEECC-C-CCCccEEEEEECCHHHHHHHHH-cCCCEE---CCEEE
Confidence            346889999999999999999999876543 444444332 2 7788999999999999999999 777655   99998


Q ss_pred             eec
Q 017670          281 LGS  283 (368)
Q Consensus       281 ~~S  283 (368)
                      ...
T Consensus        82 ~V~   84 (103)
T 1s79_A           82 LIL   84 (103)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            744

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=98.53  E-value=1.8e-07  Score=77.65  Aligned_cols=78  Identities=15%  Similarity=0.067  Sum_probs=66.0

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecC-Ccee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN-GRPL  280 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~-GRPL  280 (368)
                      .++.|||.||.+.+|.+||.++|...+-.-..+++++.      ..|.|||-|.+.++|..|+..||+..+   + ||+|
T Consensus       119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~---~~g~~l  189 (198)
T 1qm9_A          119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK------DRKMALIQMGSVEEAVQALIDLHNHDL---GENHHL  189 (198)
T ss_dssp             CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST------TSSCEEEECSSHHHHHHHHHHHTSSCC---SSCCSC
T ss_pred             CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCcc---CCCCeE
Confidence            47899999999999999999999987624455666553      369999999999999999999999877   7 9999


Q ss_pred             eeccCCCC
Q 017670          281 LGSIGTPC  288 (368)
Q Consensus       281 ~~S~g~~~  288 (368)
                      ..+.+.+.
T Consensus       190 ~v~~a~~~  197 (198)
T 1qm9_A          190 RVSFSKST  197 (198)
T ss_dssp             CEEEECCC
T ss_pred             EEEeeccc
Confidence            98876653

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.52  E-value=3.7e-08  Score=77.14  Aligned_cols=78  Identities=14%  Similarity=0.050  Sum_probs=62.2

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ..++.|||.||.+..|.+||+++|...+-.  .++++-. . +..+.|.|||.|.+.++|+.|| .+|...|   +||+|
T Consensus        13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~--~v~i~~d-~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~---~gr~i   84 (102)
T 1wez_A           13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIG-P-DGRVTGEADVEFATHEDAVAAM-AKDKANM---QHRYV   84 (102)
T ss_dssp             SSSCEEEEESCCTTCCHHHHHHSSCSCCCS--EEEEEES-S-SSCEEEEEEEECSSSHHHHHHH-TTSSCCS---SSSCC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHcCce--EEEEEEC-C-CCCEeeEEEEEECCHHHHHHHH-HhCCCeE---CCcEE
Confidence            456899999999999999999999886632  5555433 2 5678899999999999999999 5677666   99998


Q ss_pred             eeccCC
Q 017670          281 LGSIGT  286 (368)
Q Consensus       281 ~~S~g~  286 (368)
                      .-....
T Consensus        85 ~V~~~~   90 (102)
T 1wez_A           85 ELFLNS   90 (102)
T ss_dssp             EEEEEC
T ss_pred             EEEECC
Confidence            755443

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=98.52  E-value=2e-07  Score=80.60  Aligned_cols=78  Identities=15%  Similarity=0.067  Sum_probs=66.8

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecC-Ccee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN-GRPL  280 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~-GRPL  280 (368)
                      .++.|||.||.+.+|.+||.++|...+-.-..+++++.      ..|.|||.|.+.++|..||..||+..+   + ||+|
T Consensus       150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~---~~g~~l  220 (229)
T 2adc_A          150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK------DRKMALIQMGSVEEAVQALIDLHNHDL---GENHHL  220 (229)
T ss_dssp             SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS------STTCEEEEESSHHHHHHHHHHHTTCBS---SSSCBC
T ss_pred             CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC------CCcEEEEEECCHHHHHHHHHHHCCCcc---CCCCeE
Confidence            46899999999999999999999987524556666663      368999999999999999999999877   7 9999


Q ss_pred             eeccCCCC
Q 017670          281 LGSIGTPC  288 (368)
Q Consensus       281 ~~S~g~~~  288 (368)
                      ..+.+.+.
T Consensus       221 ~v~~a~~~  228 (229)
T 2adc_A          221 RVSFSKST  228 (229)
T ss_dssp             EEEECSSC
T ss_pred             EEEEecCC
Confidence            98887654

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=98.52  E-value=1.9e-07  Score=81.88  Aligned_cols=105  Identities=20%  Similarity=0.200  Sum_probs=79.5

Q ss_pred             HHHHHHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceee
Q 017670          194 ERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLL  273 (368)
Q Consensus       194 e~lr~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~  273 (368)
                      +.++......+.|||.||.+++|.+||.++|...+  -..+++       .++.|.|||.|.+.++|..||..||+..+ 
T Consensus        13 ~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G--i~~~~~-------~~~~g~afV~f~~~~~A~~A~~~l~~~~~-   82 (284)
T 3smz_A           13 EHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDYE--LKYCFV-------DKYKGTAFVTLLNGEQAEAAINAFHQSRL-   82 (284)
T ss_dssp             HHHHHHHHCCCEEEEECCCTTCCHHHHHHHTTTSC--EEEEEE-------ETTTTEEEEEESSHHHHHHHHHHHTTCEE-
T ss_pred             hhhhccCCCCCEEEEeCCCCCCCHHHHHHHHHHcC--CEEEEE-------ecCCCEEEEEeCCHHHHHHHHHHcCCCee-
Confidence            44556677889999999999999999999999876  333333       56789999999999999999999999987 


Q ss_pred             ecCCceeeeccCCCCCCCCCCccccceehhhHHHHHHHHHHhhhc
Q 017670          274 LSNGRPLLGSIGTPCFTGKQSKFVGHLALDKLKFQMQREMREAVS  318 (368)
Q Consensus       274 ls~GRPL~~S~g~~~~p~k~s~f~GHl~i~k~r~q~qrEmr~AVS  318 (368)
                        +||+|.....    |....-|+|.|.-+-    ..+++++..+
T Consensus        83 --~g~~i~v~~~----~~~~~l~v~nlp~~~----t~~~l~~~f~  117 (284)
T 3smz_A           83 --RERELSVQLQ----PTDALLCVANLPPSL----TQQQFEELVR  117 (284)
T ss_dssp             --TTEECEEEEC----CCSCEEEEESCCTTC----CHHHHHHHHG
T ss_pred             --CCeEEEEEec----CCCCEEEEcCCCCcC----CHHHHHHHHH
Confidence              8999987652    333456666665443    2345555443

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=98.52  E-value=1.3e-07  Score=75.63  Aligned_cols=81  Identities=11%  Similarity=0.151  Sum_probs=63.8

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      .++.|||.||++.+|.+||+++|...+. -..++++...  +..+.|.|||.|.+.++|..||..||+..++--.||||.
T Consensus        94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~-i~~v~~~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~  170 (175)
T 3nmr_A           94 EDRKLFIGMISKKCTENDIRVMFSSFGQ-IEECRILRGP--DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV  170 (175)
T ss_dssp             GGSEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEECT--TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred             CCCeEEEcCCCCcCCHHHHHHHHHhCCC-EEEEEEEECC--CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence            5678999999999999999999987655 3455554432  356678999999999999999999999876322259998


Q ss_pred             eccC
Q 017670          282 GSIG  285 (368)
Q Consensus       282 ~S~g  285 (368)
                      .+.+
T Consensus       171 V~~a  174 (175)
T 3nmr_A          171 VKFA  174 (175)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            6654

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.51  E-value=1.2e-07  Score=74.71  Aligned_cols=77  Identities=14%  Similarity=0.120  Sum_probs=60.0

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccC---CCCCceEEEEEechHHHHHHHHhhccceeeecCC
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFA---SPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG  277 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys---~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G  277 (368)
                      ...+.|||.||.+.+|.+||+++|.+.+...|  +++ .....   ..+-|.|||.|.+.++|+.||..|++  |   +|
T Consensus         6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~--~~~-~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~---~G   77 (114)
T 2dnl_A            6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLVV--DWP-HKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--E---DG   77 (114)
T ss_dssp             SCCCCEEEECCCTTCCHHHHHHHTTTTCCCCE--ECT-TSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--E---TT
T ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEEE--EEe-ecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--c---CC
Confidence            34678999999999999999999998776662  222 22222   47789999999999999999999954  3   78


Q ss_pred             ceeeeccC
Q 017670          278 RPLLGSIG  285 (368)
Q Consensus       278 RPL~~S~g  285 (368)
                      +.+++...
T Consensus        78 ~~~~~~~~   85 (114)
T 2dnl_A           78 KLYLCVSS   85 (114)
T ss_dssp             EEEEEECC
T ss_pred             cEEEeccC
Confidence            87776543

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=98.51  E-value=2e-07  Score=76.44  Aligned_cols=82  Identities=10%  Similarity=0.085  Sum_probs=62.1

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhcc-cee---cccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCC
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKEN-CSA---KMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG  277 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~-c~A---kmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G  277 (368)
                      ..+.|||.||.+.+|.+||.++|...+... |..   +.|..... .++.|.|||.|.+.++|+.|| .||+..|   +|
T Consensus         3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-~~~~g~afV~F~~~~~A~~Al-~l~g~~~---~g   77 (198)
T 2yh0_A            3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIF---QG   77 (198)
T ss_dssp             -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-ETTTTEEEEEESCSHHHHHHG-GGTTEEE---TT
T ss_pred             ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-cCCCCEEEEEeCCHHHHHHHH-HhcCCEE---cC
Confidence            568999999999999999999999975321 110   01111111 366899999999999999999 8998877   99


Q ss_pred             ceeeeccCCCC
Q 017670          278 RPLLGSIGTPC  288 (368)
Q Consensus       278 RPL~~S~g~~~  288 (368)
                      |+|........
T Consensus        78 ~~i~v~~~~~~   88 (198)
T 2yh0_A           78 QSLKIRRPHDY   88 (198)
T ss_dssp             EEEEEECCCCC
T ss_pred             ceEEEeCCCCC
Confidence            99988766543

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.50  E-value=8.1e-08  Score=76.62  Aligned_cols=77  Identities=16%  Similarity=0.163  Sum_probs=60.8

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhc--cceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCc
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKE--NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR  278 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke--~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GR  278 (368)
                      ..++.|||.||.+..|.+||+++|...+..  -..++|+-. . +..+.|.|||.|.+.++|+.||. +|...|   +||
T Consensus        15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~-~-~g~~~G~afV~F~~~~~a~~Al~-~~g~~~---~gr   88 (118)
T 2db1_A           15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYT-R-EGRQSGEAFVELESEDDVKLALK-KDRESM---GHR   88 (118)
T ss_dssp             CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEEC-S-SSCEEEEEEEEBSSHHHHHHHGG-GTTEEE---TTE
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEEC-C-CCCCCeEEEEEECCHHHHHHHHh-cCCCeE---CCe
Confidence            467899999999999999999999886551  122333322 1 26778999999999999999999 888766   999


Q ss_pred             eeeec
Q 017670          279 PLLGS  283 (368)
Q Consensus       279 PL~~S  283 (368)
                      +|...
T Consensus        89 ~i~V~   93 (118)
T 2db1_A           89 YIEVF   93 (118)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            98753

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.50  E-value=2.2e-07  Score=70.96  Aligned_cols=84  Identities=13%  Similarity=0.025  Sum_probs=63.3

Q ss_pred             HHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCc
Q 017670          199 AHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR  278 (368)
Q Consensus       199 A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GR  278 (368)
                      +.+..+.|||.||.+.+|.+||+++|...+.. ..++++ ....+..+-|.|||.|.+.++|..||..  ...|   +||
T Consensus        11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i-~~v~i~-~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~---~g~   83 (103)
T 2cqg_A           11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEV-LMVQVK-KDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMI---DGR   83 (103)
T ss_dssp             CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCE-EEEEEE-ECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEE---TTE
T ss_pred             ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCe-EEEEEE-ecCCCCCccceEEEEECCHHHHHHHHHc--CCee---CCe
Confidence            34567899999999999999999999876543 233332 2223356678999999999999999994  2222   999


Q ss_pred             eeeeccCCCCC
Q 017670          279 PLLGSIGTPCF  289 (368)
Q Consensus       279 PL~~S~g~~~~  289 (368)
                      +|......+..
T Consensus        84 ~l~v~~a~~~~   94 (103)
T 2cqg_A           84 WCDCKLPNSKQ   94 (103)
T ss_dssp             EEEEECCCTTC
T ss_pred             EEEEEecCCCC
Confidence            99988776543

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.50  E-value=1.4e-07  Score=75.69  Aligned_cols=76  Identities=14%  Similarity=0.129  Sum_probs=61.7

Q ss_pred             cccEEEEecCCC-CCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          202 HGTLVVLENLDP-SYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       202 ~GtlV~LqNLDp-s~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      .++.|||.||.+ .+|.+||++||..-+. -..++|+..       -|.|||.|.+.++|+.||..||..-+.+ +||||
T Consensus        14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~-V~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~~-~Gr~l   84 (102)
T 1x4d_A           14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGV-ISNHLILNK-------INEAFIEMATTEDAQAAVDYYTTTPALV-FGKPV   84 (102)
T ss_dssp             CCCEEEEESCCCSSSHHHHHHTTTGGGSC-EEEEEECSS-------SSCEEEEESSHHHHHHHHHHHHHSCCEE-TTEEC
T ss_pred             CCCEEEEeCCCCCcCCHHHHHHHHHhcCC-EEEEEEEcC-------CCEEEEEECCHHHHHHHHHHHcCCCceE-CCcEE
Confidence            478999999999 9999999999986554 455666532       3889999999999999999999643223 99999


Q ss_pred             eeccCC
Q 017670          281 LGSIGT  286 (368)
Q Consensus       281 ~~S~g~  286 (368)
                      +...+.
T Consensus        85 ~V~~a~   90 (102)
T 1x4d_A           85 RVHLSQ   90 (102)
T ss_dssp             EEEEEC
T ss_pred             EEEECC
Confidence            987665

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A

Probab=98.50  E-value=6.2e-08  Score=80.99  Aligned_cols=79  Identities=14%  Similarity=0.131  Sum_probs=63.0

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhc--cceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCc
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKE--NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR  278 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke--~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GR  278 (368)
                      ..++.|||.||.+..|.+||+++|...+..  --.++++- ... ..+.|.|||.|.+.++|+.||. +|...|   +||
T Consensus        42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~-d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l---~gr  115 (136)
T 2hgl_A           42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIY-TRE-GRQSGEAFVELGSEDDVKMALK-KDRESM---GHR  115 (136)
T ss_dssp             CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEE-CSS-SCEEEEEEEECSSHHHHHHHHT-TTEEES---SSS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEE-CCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEE---CCE
Confidence            467899999999999999999999987652  12233332 222 6778999999999999999999 998877   999


Q ss_pred             eeeeccC
Q 017670          279 PLLGSIG  285 (368)
Q Consensus       279 PL~~S~g  285 (368)
                      +|.-...
T Consensus       116 ~i~V~~a  122 (136)
T 2hgl_A          116 YIEVFKS  122 (136)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            9985543

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=98.50  E-value=1.7e-07  Score=71.26  Aligned_cols=75  Identities=8%  Similarity=0.019  Sum_probs=61.1

Q ss_pred             HhcccEEEEecCCC-CCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCc
Q 017670          200 HEHGTLVVLENLDP-SYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR  278 (368)
Q Consensus       200 ~E~GtlV~LqNLDp-s~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GR  278 (368)
                      ...++.|||.||.+ .+|.+||+++|...+.. ..+++         +.|.|||.|.+.++|..||..||...|   +||
T Consensus         7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v-~~v~i---------~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~   73 (96)
T 2kvi_A            7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHI-MQINI---------KNAFGFIQFDNPQSVRDAIECESQEMN---FGK   73 (96)
T ss_dssp             --CCEEEEEESSTTSCCCHHHHHHHHTTTCCC-CEEEE---------ETTEEEEEESCHHHHHHHHHHHTCSSC---BTT
T ss_pred             CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCE-EEEEE---------eCCEEEEEECCHHHHHHHHHHcCCCee---CCc
Confidence            35688999999999 99999999999886542 22332         269999999999999999999999987   899


Q ss_pred             eeeeccCCC
Q 017670          279 PLLGSIGTP  287 (368)
Q Consensus       279 PL~~S~g~~  287 (368)
                      +|......+
T Consensus        74 ~l~V~~a~~   82 (96)
T 2kvi_A           74 KLILEVSSS   82 (96)
T ss_dssp             TBCEEEEEC
T ss_pred             EEEEEEcCc
Confidence            998766543

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=98.49  E-value=1.2e-07  Score=76.06  Aligned_cols=78  Identities=13%  Similarity=0.089  Sum_probs=63.5

Q ss_pred             ccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670          203 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG  282 (368)
Q Consensus       203 GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~  282 (368)
                      ++.|||.||.+.+|.+||.++|...+.. ..++++. ..-+..+.|.|||-|.+.++|..|+..||+..+   +||+|..
T Consensus        94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v-~~v~i~~-~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~V  168 (172)
T 2g4b_A           94 AHKLFIGGLPNYLNDDQVKELLTSFGPL-KAFNLVK-DSATGLSKGYAFCEYVDINVTDQAIAGLNGMQL---GDKKLLV  168 (172)
T ss_dssp             TTCEEEECCCTTCCHHHHHHHHHTTSCE-EEEEEEE-CTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEE---TTEECEE
T ss_pred             CCEEEEEcCCCcCCHHHHHHHHHhcCCc-eEEEEEe-cCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEE---CCeEEEE
Confidence            7899999999999999999999976543 3444332 223456678999999999999999999999887   9999986


Q ss_pred             ccC
Q 017670          283 SIG  285 (368)
Q Consensus       283 S~g  285 (368)
                      +.+
T Consensus       169 ~~A  171 (172)
T 2g4b_A          169 QRA  171 (172)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            643

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.49  E-value=3.6e-07  Score=69.06  Aligned_cols=77  Identities=12%  Similarity=-0.014  Sum_probs=61.0

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCc-eEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFG-QSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG-~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      .-+.|||.||.+.+|.+||+++|...+.....  +     + ++.+| .|||.|.+.++|+.||. ||...|   +||+|
T Consensus         7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~-----~-~~~~g~~afV~f~~~~~a~~ai~-l~g~~~---~g~~l   74 (94)
T 2e5g_A            7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--V-----M-DKDKGVFAIVEMGDVGAREAVLS-QSQHSL---GGHRL   74 (94)
T ss_dssp             TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--E-----E-CSSSCCEEEEEESSHHHHHHHHT-CSCCEE---TTEEC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--E-----E-cCCCCcEEEEEECCHHHHHHHHh-cCCeEE---CCEEE
Confidence            34689999999999999999999876654421  1     1 22333 89999999999999999 999887   99999


Q ss_pred             eeccCCCCCC
Q 017670          281 LGSIGTPCFT  290 (368)
Q Consensus       281 ~~S~g~~~~p  290 (368)
                      ....+.+..+
T Consensus        75 ~V~~a~~~~~   84 (94)
T 2e5g_A           75 RVRPREQKEF   84 (94)
T ss_dssp             CCBCSCCSCC
T ss_pred             EEEECCcCCC
Confidence            9876654443

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.49  E-value=1.3e-07  Score=77.59  Aligned_cols=78  Identities=26%  Similarity=0.255  Sum_probs=62.0

Q ss_pred             hcccEEEEecCCCC-CCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          201 EHGTLVVLENLDPS-YTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       201 E~GtlV~LqNLDps-~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      +.++.|||.||.+. +|.+||++||..-+. -..++|+       +.-|.|||.|.+.++|..||..||..-+.+ +|||
T Consensus        23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~-V~~v~i~-------~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l-~Gr~   93 (112)
T 1x4f_A           23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGK-IKNYILM-------RMKSQAFIEMETREDAMAMVDHCLKKALWF-QGRC   93 (112)
T ss_dssp             CCCCEEEEESCCCSSCCSHHHHTTTTTTSC-CSEEEEE-------TTTTEEEEECSSHHHHHHHHHHHHHSCCCS-SSSC
T ss_pred             CCCCEEEEeCCCCccCCHHHHHHHHHhcCC-EEEEEEe-------cCCCEEEEEECCHHHHHHHHHHhccCCceE-CCEE
Confidence            35899999999997 999999999987554 4455554       235999999999999999999997532222 9999


Q ss_pred             eeeccCCC
Q 017670          280 LLGSIGTP  287 (368)
Q Consensus       280 L~~S~g~~  287 (368)
                      |....+..
T Consensus        94 l~V~~a~~  101 (112)
T 1x4f_A           94 VKVDLSEK  101 (112)
T ss_dssp             CEEEEECS
T ss_pred             EEEEECcc
Confidence            99877643

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=98.47  E-value=2e-07  Score=76.49  Aligned_cols=83  Identities=12%  Similarity=0.095  Sum_probs=67.0

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ..++.|||.||.+.+|.+||.++|...+.. ..++++.. .-+..+.|.|||.|.+.++|..||..||+..|   +||+|
T Consensus       112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v-~~~~~~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l  186 (198)
T 2yh0_A          112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPL-KAFNLVKD-SATGLSKGYAFCEYVDINVTDQAIAGLNGMQL---GDKKL  186 (198)
T ss_dssp             CCCCEEEEECCCTTCCHHHHHHHHHTBSCE-EEEEEEEC-TTTCSEEEEEEEEESSSSHHHHHHHHHTTCEE---TTEEC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHcCCc-cEEEEeec-CCCCCcceEEEEEECCHHHHHHHHHHcCCCEE---CCEEE
Confidence            456899999999999999999999875543 34443322 22356688999999999999999999999887   99999


Q ss_pred             eeccCCCC
Q 017670          281 LGSIGTPC  288 (368)
Q Consensus       281 ~~S~g~~~  288 (368)
                      ..+...+.
T Consensus       187 ~v~~a~~~  194 (198)
T 2yh0_A          187 LVQRASVG  194 (198)
T ss_dssp             EEEESCCC
T ss_pred             EEEECCCC
Confidence            98877654

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=98.47  E-value=2.9e-07  Score=80.95  Aligned_cols=86  Identities=14%  Similarity=0.127  Sum_probs=67.4

Q ss_pred             HHHhcccEEEEecCCCC-CCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecC
Q 017670          198 VAHEHGTLVVLENLDPS-YTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN  276 (368)
Q Consensus       198 ~A~E~GtlV~LqNLDps-~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~  276 (368)
                      .....++.|||.||.+. +|.+||.++|...+ .-..++++.....+..+.|.|||-|.+.++|..|| .||+..|   +
T Consensus       205 ~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G-~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~---~  279 (292)
T 2ghp_A          205 SATLEGREIMIRNLSTELLDENLLRESFEGFG-SIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLL---G  279 (292)
T ss_dssp             --CCTTTEEEEEEECTTTCCHHHHHHHHGGGS-CEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEE---T
T ss_pred             ccCCCCceEEEECCCcccCCHHHHHHHHhccC-CeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEE---C
Confidence            34567899999999999 99999999998744 33445555432213677899999999999999999 9999987   9


Q ss_pred             CceeeeccCCCC
Q 017670          277 GRPLLGSIGTPC  288 (368)
Q Consensus       277 GRPL~~S~g~~~  288 (368)
                      ||+|..+.+.+.
T Consensus       280 g~~i~V~~a~~k  291 (292)
T 2ghp_A          280 NREISVSLADKK  291 (292)
T ss_dssp             TEEEEEEECCCC
T ss_pred             CcEEEEEEecCC
Confidence            999998887654

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=98.47  E-value=1.2e-07  Score=84.28  Aligned_cols=82  Identities=12%  Similarity=0.005  Sum_probs=65.0

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhh-ccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFK-ENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~k-e~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ..+.|||.||.+.+|.+||+++|...+- .-..++++- ...+...-|.|||.|.+.++|+.||..||...|   +||+|
T Consensus        67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~-d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~---~Gr~l  142 (229)
T 3q2s_C           67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFE-NRANGQSKGFALVGVGSEASSKKLMDLLPKREL---HGQNP  142 (229)
T ss_dssp             --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEE-CTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCB---TTBCC
T ss_pred             CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEe-cCCCCccceEEEEEECCHHHHHHHHHHcCCCeE---CCEEe
Confidence            6789999999999999999999987652 344554442 233456678999999999999999999999988   99999


Q ss_pred             eeccCCC
Q 017670          281 LGSIGTP  287 (368)
Q Consensus       281 ~~S~g~~  287 (368)
                      ......+
T Consensus       143 ~V~~a~~  149 (229)
T 3q2s_C          143 VVTPVNK  149 (229)
T ss_dssp             EEEECCH
T ss_pred             EEEECCC
Confidence            9776543

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.47  E-value=3.7e-07  Score=75.01  Aligned_cols=74  Identities=18%  Similarity=0.252  Sum_probs=59.2

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      .-|+|||.||....+.++|..-+.+.|.. |--+++..+.      |+|||.|...++|..|+++||+--|   +||||.
T Consensus         8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~-yGG~Vl~Vtg------G~AfV~F~~~esA~~A~~~l~G~~l---~gr~i~   77 (96)
T 2diu_A            8 CHTLLYVYNLPANKDGKSVSNRLRRLSDN-CGGKVLSITG------CSAILRFINQDSAERAQKRMENEDV---FGNRII   77 (96)
T ss_dssp             SSEEEEEESCCTTSCHHHHHHHHHHHHHT-TTCCEEECCT------TCEEEEESSHHHHHHHHHHHTTCCS---SSSCCE
T ss_pred             cceEEEEeCCCCcCCHHHHHHHHHHHHHH-cCCeeEEEec------CEEEEEECCHHHHHHHHHHhcCCcc---CCceEE
Confidence            46889999999999999977666666654 2112222232      9999999999999999999999988   999999


Q ss_pred             eccC
Q 017670          282 GSIG  285 (368)
Q Consensus       282 ~S~g  285 (368)
                      -+.+
T Consensus        78 v~~A   81 (96)
T 2diu_A           78 VSFT   81 (96)
T ss_dssp             EESS
T ss_pred             EEec
Confidence            7766

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=97.85  E-value=1.9e-08  Score=78.81  Aligned_cols=86  Identities=14%  Similarity=0.108  Sum_probs=68.0

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccce-------ecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCS-------AKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLL  273 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~-------AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~  273 (368)
                      ...+.|||.||.+.+|.+||+++|...+.....       +++ +.......+.|.|||.|.+.++|..||..||...| 
T Consensus         5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~-   82 (116)
T 2lcw_A            5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINL-YTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF-   82 (116)
Confidence            356889999999999999999999987765321       222 22223356789999999999999999999999877 


Q ss_pred             ecCCceeeeccCCCCCC
Q 017670          274 LSNGRPLLGSIGTPCFT  290 (368)
Q Consensus       274 ls~GRPL~~S~g~~~~p  290 (368)
                        +||+|....+.+...
T Consensus        83 --~g~~l~V~~a~~~~~   97 (116)
T 2lcw_A           83 --SGNPIKVSFATRRAD   97 (116)
Confidence              899999877765543

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=98.46  E-value=2.8e-07  Score=80.19  Aligned_cols=74  Identities=12%  Similarity=0.137  Sum_probs=62.5

Q ss_pred             cccEEEEecCC-CCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          202 HGTLVVLENLD-PSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       202 ~GtlV~LqNLD-ps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      .++.|||.||+ +.+|.+++.+||...+. -..++++..      +-|.|||.|.+.++|+.||..||+..|   +||||
T Consensus         3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~-v~~v~i~~~------~~g~afV~f~~~~~A~~Ai~~lng~~~---~g~~l   72 (205)
T 3tyt_A            3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGN-VEKVKFMKS------KPGAAMVEMADGYAVDRAITHLNNNFM---FGQKM   72 (205)
T ss_dssp             CCSEEEEECCCTTTCCHHHHHHHHTTTSC-EEEEEECTT------STTCEEEEESSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred             CCCEEEEeCCCcccCCHHHHHHHHHhcCC-eEEEEEecC------CCCEEEEEECCHHHHHHHHHHhCCCEE---CCceE
Confidence            57899999999 69999999999987554 445555532      359999999999999999999999988   99999


Q ss_pred             eeccC
Q 017670          281 LGSIG  285 (368)
Q Consensus       281 ~~S~g  285 (368)
                      .....
T Consensus        73 ~v~~s   77 (205)
T 3tyt_A           73 NVCVS   77 (205)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            87754

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=98.46  E-value=2.2e-07  Score=74.31  Aligned_cols=110  Identities=13%  Similarity=0.118  Sum_probs=76.5

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCC--CCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFAS--PYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~--p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      ..+.|||.||.+.+|.+||+++|...+. -..++++. ....+  .+.|.|||.|.+.++|..||..||+..++-..++|
T Consensus         2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~i~~-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~   79 (175)
T 3nmr_A            2 DAIKMFVGQVPRTWSEKDLRELFEQYGA-VYEINVLR-DRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHP   79 (175)
T ss_dssp             CCEEEEEESCCTTCCHHHHHHHHHTTSC-EEEEEEEE-ECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred             CceEEEEeCCCCCCCHHHHHHHHHhCCC-EEEEEEEe-cCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccc
Confidence            4688999999999999999999988664 33444432 22222  56789999999999999999999998774444788


Q ss_pred             eeeccCCCCCC---CCCCccccceehhhHHHHHHHHHHhhh
Q 017670          280 LLGSIGTPCFT---GKQSKFVGHLALDKLKFQMQREMREAV  317 (368)
Q Consensus       280 L~~S~g~~~~p---~k~s~f~GHl~i~k~r~q~qrEmr~AV  317 (368)
                      +......+...   ....-|+|.|.-+-    ..+++++..
T Consensus        80 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~----t~~~l~~~F  116 (175)
T 3nmr_A           80 IQMKPADSEKNNAVEDRKLFIGMISKKC----TENDIRVMF  116 (175)
T ss_dssp             CEEEECGGGCCSCGGGSEEEEESCCTTC----CHHHHHHHH
T ss_pred             eEEccccccccccCCCCeEEEcCCCCcC----CHHHHHHHH
Confidence            87665544333   22445666665442    224455544

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=98.44  E-value=1.9e-07  Score=74.44  Aligned_cols=77  Identities=19%  Similarity=0.216  Sum_probs=61.5

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCC--ce
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG--RP  279 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G--RP  279 (368)
                      .++.|+|.||.+.+|.+||.++|...+.. ..+++ ++...+..+.|.|||-|.+.++|..|+..||+..+   +|  ||
T Consensus        88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i-~~~~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~~~  162 (168)
T 1b7f_A           88 KDTNLYVTNLPRTITDDQLDTIFGKYGSI-VQKNI-LRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIP---EGGSQP  162 (168)
T ss_dssp             TTCEEEEESCCTTCCHHHHHHHHTSSSCE-EEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC---TTCSSC
T ss_pred             CCCCEEEeCCCCCCCHHHHHHhhhcCCcE-EEEEE-EEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEe---cCCCeE
Confidence            46889999999999999999999875542 33333 23333456779999999999999999999999977   77  99


Q ss_pred             eeec
Q 017670          280 LLGS  283 (368)
Q Consensus       280 L~~S  283 (368)
                      |.-+
T Consensus       163 l~V~  166 (168)
T 1b7f_A          163 LSVR  166 (168)
T ss_dssp             CEEE
T ss_pred             EEEE
Confidence            8754

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A

Probab=98.42  E-value=1.4e-07  Score=79.31  Aligned_cols=82  Identities=13%  Similarity=0.052  Sum_probs=64.4

Q ss_pred             HHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCc
Q 017670          199 AHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR  278 (368)
Q Consensus       199 A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GR  278 (368)
                      +.+.++.|||.||.+..|.+||+++|...+ . ..++++-..  +..+.|.|||.|.+.++|+.|| .+|...|   +||
T Consensus        42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i-~~v~i~~d~--~g~srGfaFV~F~~~e~A~~Al-~~~g~~l---~gR  113 (139)
T 2hgn_A           42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-P-VRVHIEIGP--DGRVTGEADVEFATHEEAVAAM-SKDRANM---QHR  113 (139)
T ss_dssp             ---CCCCEECCSCCTTCCHHHHHHHHCSCC-C-SEEECCCSS--SSCSSCCCEEECSHHHHHHHHT-TCCSCSS---SSC
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-C-eEEEEEECC--CCCCceEEEEEeCCHHHHHHHH-hhCCCEE---CCE
Confidence            456788999999999999999999999866 3 355554332  2678899999999999999999 7888766   999


Q ss_pred             eeeeccCCCC
Q 017670          279 PLLGSIGTPC  288 (368)
Q Consensus       279 PL~~S~g~~~  288 (368)
                      +|.-....+.
T Consensus       114 ~i~V~~a~~~  123 (139)
T 2hgn_A          114 YIELFLNSTT  123 (139)
T ss_dssp             CCCCEECCCS
T ss_pred             EEEEEECCCC
Confidence            9876555443

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A

Probab=98.41  E-value=2.8e-07  Score=76.56  Aligned_cols=76  Identities=17%  Similarity=0.111  Sum_probs=58.7

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccc-eecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENC-SAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c-~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      +..+.|||.||.+..|.+||+++|... ...- .++++ .... ..+.|.|||.|.+.++|+.||.. ++..|   +||+
T Consensus        40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~-~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l---~gR~  112 (126)
T 2hgm_A           40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLP-VDPE-GKITGEAFVQFASQELAEKALGK-HKERI---GHRY  112 (126)
T ss_dssp             SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECC-CCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCB---TTBC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEE-ECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEE---CCEE
Confidence            456889999999999999999999875 3220 33333 2222 67889999999999999999986 55555   9999


Q ss_pred             eeec
Q 017670          280 LLGS  283 (368)
Q Consensus       280 L~~S  283 (368)
                      |.-.
T Consensus       113 I~V~  116 (126)
T 2hgm_A          113 IEVF  116 (126)
T ss_dssp             CCCE
T ss_pred             EEEE
Confidence            8643

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=98.41  E-value=2.9e-07  Score=80.67  Aligned_cols=84  Identities=15%  Similarity=0.158  Sum_probs=69.0

Q ss_pred             hcccEEEEecCCCCC-CchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          201 EHGTLVVLENLDPSY-TSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       201 E~GtlV~LqNLDps~-ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      ..++.|||.||.+.+ |.+||.++|...+. -..++++...  +..+.|.|||-|.+.++|..|+..||+..|   +|||
T Consensus       182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~-i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~  255 (284)
T 3smz_A          182 LHSRCLCVDRLPPGFNDVDALCRALSAVHS-PTFCQLACGQ--DGQLKGFAVLEYETAEMAEEAQQQADGLSL---GGSH  255 (284)
T ss_dssp             TSCSEEEEECCCTTCCCHHHHHHHTCSSSC-CSEEEEEECS--SCCEEEEEEEECSSHHHHHHHHHHHTTCEE---TTEE
T ss_pred             CCccEEEEecCCcccCCHHHHHHHhhCCCC-eEEEEEEECC--CCCcccEEEEEeCCHHHHHHHHHHhCCCcc---CCeE
Confidence            568899999999998 77999999986543 3444444332  467789999999999999999999999988   9999


Q ss_pred             eeeccCCCCCC
Q 017670          280 LLGSIGTPCFT  290 (368)
Q Consensus       280 L~~S~g~~~~p  290 (368)
                      |..+.+.+..+
T Consensus       256 l~v~~a~~~~~  266 (284)
T 3smz_A          256 LRVSFCAPGPP  266 (284)
T ss_dssp             CEEEECCSSSC
T ss_pred             EEEEEecCCCc
Confidence            99998876654

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=98.40  E-value=4.5e-07  Score=75.28  Aligned_cols=76  Identities=17%  Similarity=0.197  Sum_probs=62.4

Q ss_pred             cccEEEEecCCC-CCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          202 HGTLVVLENLDP-SYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       202 ~GtlV~LqNLDp-s~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      .++.|||.||.+ .+|.+||+++|...+.. ...+++..      ..|.|||.|.+.++|..||..||+..+   +||+|
T Consensus         2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i-~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l~~~~~---~g~~l   71 (198)
T 1qm9_A            2 GNSVLLVSNLNPERVTPQSLFILFGVYGDV-QRVKILFN------KKENALVQMADGNQAQLAMSHLNGHKL---HGKPI   71 (198)
T ss_dssp             CCCEEEEECCCSSSCCHHHHHHHHHTTCCC-SEEECSTT------CSSCCEEECTTTHHHHHHHHHHTTCCC---SSCCC
T ss_pred             CCcEEEEeCCCcccCCHHHHHHHHHhcCCE-EEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCee---cCeEE
Confidence            368999999999 99999999999886653 33433321      278999999999999999999999877   99999


Q ss_pred             eeccCCC
Q 017670          281 LGSIGTP  287 (368)
Q Consensus       281 ~~S~g~~  287 (368)
                      ......+
T Consensus        72 ~v~~a~~   78 (198)
T 1qm9_A           72 RITLSKH   78 (198)
T ss_dssp             EEEECCC
T ss_pred             EEEEecC
Confidence            8876543

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.39  E-value=2.3e-07  Score=76.32  Aligned_cols=76  Identities=18%  Similarity=0.169  Sum_probs=60.3

Q ss_pred             HhcccEEEEecCCCCCCchHHHHHHHHHhhcc---ceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecC
Q 017670          200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKEN---CSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN  276 (368)
Q Consensus       200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~---c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~  276 (368)
                      -+.++.|||.||.+..|.+||+++|...+...   -.++|+-.  .+.++.|.|||.|.+.++|+.||.+ |...|   +
T Consensus        20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d--~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l---~   93 (123)
T 2dha_A           20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY--PDGRPTGDAFVLFACEEYAQNALRK-HKDLL---G   93 (123)
T ss_dssp             CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC--TTSCEEEEEEECCSSHHHHHHHHTT-TTEES---S
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC--CCCCEeeEEEEEECCHHHHHHHHHh-CCCee---C
Confidence            35678999999999999999999999865421   22333332  2467889999999999999999997 77666   8


Q ss_pred             Cceee
Q 017670          277 GRPLL  281 (368)
Q Consensus       277 GRPL~  281 (368)
                      ||+|.
T Consensus        94 gR~i~   98 (123)
T 2dha_A           94 KRYIE   98 (123)
T ss_dssp             SCEEC
T ss_pred             CeEEE
Confidence            99876

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=98.37  E-value=4.1e-07  Score=74.45  Aligned_cols=86  Identities=10%  Similarity=0.011  Sum_probs=62.6

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ...+.|||.||.+.+|.+||.++|...+. -..++++. ..-+..+.|.|||-|.+.++|..||.. ++..|   +||+|
T Consensus       102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~v~i~~-~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~---~G~~i  175 (196)
T 1l3k_A          102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGK-IEVIEIMT-DRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTV---NGHNC  175 (196)
T ss_dssp             -CCSEEEEECCTTTCCHHHHHHHHTTTSC-EEEEEEEE-CTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEE---TTEEC
T ss_pred             CCcceEEEeCCCCCCCHHHHHHHHhcCCC-eEEEEEee-cCCCCCccceEEEEECCHHHHHHHHHh-CCcEE---CCEEE
Confidence            44589999999999999999999986543 33343332 222356788999999999999999987 66555   99999


Q ss_pred             eeccCCCCCCCC
Q 017670          281 LGSIGTPCFTGK  292 (368)
Q Consensus       281 ~~S~g~~~~p~k  292 (368)
                      ..+.+.+....+
T Consensus       176 ~v~~a~~k~~~~  187 (196)
T 1l3k_A          176 EVRKALSKQEMA  187 (196)
T ss_dssp             EEEECC------
T ss_pred             EEEecCChhHhc
Confidence            988887765544

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=98.37  E-value=5.8e-07  Score=73.57  Aligned_cols=83  Identities=12%  Similarity=0.031  Sum_probs=64.2

Q ss_pred             HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      .+..+.|||.||.+.+|.+||+++|...+.. ..++++. ...+..+.|.|||.|.+.++|..||.. ++..|   +||+
T Consensus        10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~i~~-~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~---~g~~   83 (196)
T 1l3k_A           10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTL-TDCVVMR-DPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKV---DGRV   83 (196)
T ss_dssp             CGGGGEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEEE-CTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEE---TTEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCE-EEEEEEE-cCCCCCccceEEEEeCCHHHHHHHHhc-CCCEE---CCEE
Confidence            3568899999999999999999999986653 3444433 223356678999999999999999977 66555   9999


Q ss_pred             eeeccCCCC
Q 017670          280 LLGSIGTPC  288 (368)
Q Consensus       280 L~~S~g~~~  288 (368)
                      |......+.
T Consensus        84 l~v~~~~~~   92 (196)
T 1l3k_A           84 VEPKRAVSR   92 (196)
T ss_dssp             CEEEECCC-
T ss_pred             eeeecccCc
Confidence            987766543

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=98.36  E-value=8.4e-07  Score=86.33  Aligned_cols=83  Identities=8%  Similarity=0.019  Sum_probs=67.6

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ...+.|||.||.+.+|.++|.++|...+.. ..++|+ .......+.|.|||.|.+.++|..||..||+..|   +|++|
T Consensus       100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I-~~v~i~-~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i---~gr~i  174 (437)
T 3pgw_S          100 DAFKTLFVARVNYDTTESKLRREFEVYGPI-KRIHMV-YSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI---DGRRV  174 (437)
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHcCCe-eEEEee-ccCCCCCccceEEEeeccHHHHHHHHHHcCCCEE---CCEEE
Confidence            345899999999999999999999986544 344443 2233456789999999999999999999999987   99999


Q ss_pred             eeccCCCC
Q 017670          281 LGSIGTPC  288 (368)
Q Consensus       281 ~~S~g~~~  288 (368)
                      ....+.+.
T Consensus       175 ~V~~a~~~  182 (437)
T 3pgw_S          175 LVDVERGR  182 (437)
T ss_pred             EEEEeCCC
Confidence            98877653

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=98.36  E-value=9.5e-07  Score=76.85  Aligned_cols=71  Identities=10%  Similarity=-0.020  Sum_probs=60.1

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhcc-ceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCc
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKEN-CSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR  278 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~-c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GR  278 (368)
                      -++.|||.||.+++|.+||++||...+... +.+++++..   +...|.|||-|.+.++|..||..||+.-|   +|+
T Consensus       122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~---~~~~g~gfV~f~~~~~A~~Ai~~lng~~~---~g~  193 (205)
T 3tyt_A          122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK---SERSSSGLLEWDSKSDALETLGFLNHYQM---KNP  193 (205)
T ss_dssp             CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC---SSSSEEEEEECSSHHHHHHHHHHHTTCEE---CCS
T ss_pred             CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC---CCCceEEEEEeCCHHHHHHHHHHhCCCCc---cCC
Confidence            467899999999999999999999977653 677777654   23459999999999999999999999977   555

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=98.35  E-value=8e-07  Score=70.98  Aligned_cols=95  Identities=16%  Similarity=0.163  Sum_probs=68.5

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      ..+.|||.||.+.+|.+||.++|...+. -...+++ +...+..+.|.|||.|.+.++|+.||...  .  .+ +||+|.
T Consensus         2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~-i~~v~i~-~~~~~g~~~g~afV~f~~~~~a~~A~~~~--~--~~-~g~~i~   74 (167)
T 2cjk_A            2 ESCKMFIGGLNWDTTEDNLREYFGKYGT-VTDLKIM-KDPATGRSRGFGFLSFEKPSSVDEVVKTQ--H--IL-DGKVID   74 (167)
T ss_dssp             GGGEEEECSCCTTCCHHHHHHHHTTTCC-EEEEECC-CCTTTSSCCSCEEEEESSTHHHHHHHHSC--C--EE-TTEECC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhCCC-EEEEEEE-ECCCCCCccceEEEEEccHHHHHHHHhcc--c--cc-CCeEcc
Confidence            5789999999999999999999988664 3334333 33344678899999999999999999952  2  23 999998


Q ss_pred             eccCCCCCCC--CCCccccceehh
Q 017670          282 GSIGTPCFTG--KQSKFVGHLALD  303 (368)
Q Consensus       282 ~S~g~~~~p~--k~s~f~GHl~i~  303 (368)
                      .....+....  ...-|+|.|.-+
T Consensus        75 v~~~~~~~~~~~~~~l~V~nlp~~   98 (167)
T 2cjk_A           75 PKRAIPRDEQDKTGKIFVGGIGPD   98 (167)
T ss_dssp             CEECCCHHHHHHCEEEEEEEECTT
T ss_pred             cccccchhhccCCCeEEECCCCCC
Confidence            7665443322  134566666544

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=98.35  E-value=5.2e-07  Score=77.20  Aligned_cols=79  Identities=24%  Similarity=0.190  Sum_probs=63.5

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ...+.|||.||.+.+|.+||.++|...+. -..++++..   .+.+.|.|||.|.+.++|+.||..||+..|   +||+|
T Consensus       101 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~-i~~~~i~~d---~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~---~g~~i  173 (213)
T 4f02_A          101 SGVGNIFIKNLDKSIDNKALYDTFSAFGN-ILSCKVVCD---ENGSKGYGFVHFETQEAAERAIEKMNGMLL---NDRKV  173 (213)
T ss_dssp             HCTTEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEEE---TTEEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred             cccccceECCcccccHHHHHHHHHhhcCC-eEEEEeecc---CCCCceEEEEEeCCHHHHHHHHHHhCCCEE---CCEEE
Confidence            34567999999999999999999987554 344544432   134578999999999999999999999877   99999


Q ss_pred             eeccCC
Q 017670          281 LGSIGT  286 (368)
Q Consensus       281 ~~S~g~  286 (368)
                      .-..+.
T Consensus       174 ~V~~a~  179 (213)
T 4f02_A          174 FVGRFK  179 (213)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            876654

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=98.35  E-value=1.4e-06  Score=75.38  Aligned_cols=77  Identities=17%  Similarity=0.194  Sum_probs=63.7

Q ss_pred             hcccEEEEecCCC-CCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          201 EHGTLVVLENLDP-SYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       201 E~GtlV~LqNLDp-s~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      ..++.|||.||.+ .+|.+||+++|...+.. ..++++..      ..|.|||.|.+.++|+.||..||+..+   +||+
T Consensus        32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i-~~v~i~~~------~~g~afV~F~~~~~A~~Ai~~l~g~~~---~g~~  101 (229)
T 2adc_A           32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDV-QRVKILFN------KKENALVQMADGNQAQLAMSHLNGHKL---HGKP  101 (229)
T ss_dssp             CCCSEEEEESCCTTTCCHHHHHHHHHHHTCE-EEEEECCT------TSCCEEEEESCHHHHHHHHHHHTTCBC---SSSB
T ss_pred             CCCCEEEEeCCCcccCCHHHHHHHHHhCCCe-EEEEEEEC------CCCEEEEEECCHHHHHHHHHHhCCCeE---CCeE
Confidence            4578999999999 99999999999887653 33444332      168999999999999999999999877   9999


Q ss_pred             eeeccCCC
Q 017670          280 LLGSIGTP  287 (368)
Q Consensus       280 L~~S~g~~  287 (368)
                      |......+
T Consensus       102 l~v~~a~~  109 (229)
T 2adc_A          102 IRITLSKH  109 (229)
T ss_dssp             CEEECCSC
T ss_pred             EEEEEecC
Confidence            99876654

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=98.34  E-value=1e-06  Score=77.58  Aligned_cols=97  Identities=18%  Similarity=0.214  Sum_probs=70.3

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      ..+.|||.||.+.+|.+||.++|...+-.-..++++....  +.+.|.|||.|.+.++|..||..||+..|   +||+|.
T Consensus       116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~  190 (292)
T 2ghp_A          116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF--NTSRRFAYIDVTSKEDARYCVEKLNGLKI---EGYTLV  190 (292)
T ss_dssp             CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC---------CCEEEEECSSHHHHHHHHHHHTTCEE---TTEECE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC--CCcceEEEEEECCHHHHHHHHHHhCCCEe---CCcEEE
Confidence            5789999999999999999999999662334444443222  56789999999999999999999999887   999999


Q ss_pred             eccCCCCCCC---------CCCccccceehh
Q 017670          282 GSIGTPCFTG---------KQSKFVGHLALD  303 (368)
Q Consensus       282 ~S~g~~~~p~---------k~s~f~GHl~i~  303 (368)
                      .....+....         ...-|+|+|.-+
T Consensus       191 v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~  221 (292)
T 2ghp_A          191 TKVSNPLEKSKRTDSATLEGREIMIRNLSTE  221 (292)
T ss_dssp             EEECCCC---------CCTTTEEEEEEECTT
T ss_pred             EEECCCCcccccccccCCCCceEEEECCCcc
Confidence            8776544322         133466666544

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=98.34  E-value=6.8e-07  Score=76.49  Aligned_cols=96  Identities=17%  Similarity=0.180  Sum_probs=71.6

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      -.|.|||.||.+.+|.+||+++|...+.. ..++++ +...+..+.|.|||.|.+.++|+.||..+|...+   +||++.
T Consensus        14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I-~~v~i~-~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~---~g~~i~   88 (213)
T 4f02_A           14 PMASLYVGDLHPDVTEAMLYEKFSPAGPI-LSIRVC-RDMITRRSLGYAYVNFQQPADAERALDTMNFDVI---KGKPVR   88 (213)
T ss_dssp             -CCEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEE-ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhhCCE-EEEEEe-cccCCCCccccccceeCCHHHHHHHHHHhhhhhc---CCcccc
Confidence            45789999999999999999999886643 344443 3344567889999999999999999999999877   999987


Q ss_pred             eccCCCCCC----CCCCccccceeh
Q 017670          282 GSIGTPCFT----GKQSKFVGHLAL  302 (368)
Q Consensus       282 ~S~g~~~~p----~k~s~f~GHl~i  302 (368)
                      .........    ....-|+|+|.-
T Consensus        89 ~~~~~~~~~~~~~~~~~l~v~nl~~  113 (213)
T 4f02_A           89 IMWSQRDPSLRKSGVGNIFIKNLDK  113 (213)
T ss_dssp             EEECCCCTHHHHHCTTEEEEESCCT
T ss_pred             cccccccccccccccccceECCccc
Confidence            665543222    112346666554

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A

Probab=98.33  E-value=2.5e-07  Score=70.51  Aligned_cols=78  Identities=15%  Similarity=0.090  Sum_probs=61.2

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ...+.|||.||.+.+|.+||+++|...+.. ..++++...  +..+.|.|||.|.+.++|+.||.  +..-|   +|++|
T Consensus         7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~~~--~g~~~g~afV~f~~~~~a~~Ai~--~~~~~---~g~~l   78 (102)
T 2xs2_A            7 IMPNTVFVGGIDVRMDETEIRSFFARYGSV-KEVKIITDR--TGVSKGYGFVSFYNDVDVQKIVE--SQINF---HGKKL   78 (102)
T ss_dssp             EEEEEEEEECCCTTCCHHHHHHHHGGGSCE-EEEEEEECT--TSCEEEEEEEEESSCCCHHHHTT--CCCEE---TTEEC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCCCe-EEEEEEECC--CCCccceEEEEECCHHHHHHHHh--CCCeE---CCEEE
Confidence            456899999999999999999999776543 444444433  56778999999999999999999  55555   89988


Q ss_pred             eeccCC
Q 017670          281 LGSIGT  286 (368)
Q Consensus       281 ~~S~g~  286 (368)
                      ......
T Consensus        79 ~v~~a~   84 (102)
T 2xs2_A           79 KLGPAI   84 (102)
T ss_dssp             EEEEEE
T ss_pred             EEEECC
Confidence            755444

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.31  E-value=2.4e-06  Score=67.13  Aligned_cols=78  Identities=14%  Similarity=0.179  Sum_probs=54.7

Q ss_pred             ccEEEEecCCCCCC--c-----hHHHHHHHHHhhc---cceecccCCcccCCCCCceEEEEEechHHHHHHHHhhcccee
Q 017670          203 GTLVVLENLDPSYT--S-----TVVEDLVWHAFKE---NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL  272 (368)
Q Consensus       203 GtlV~LqNLDps~t--s-----~dVedLi~~a~ke---~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL  272 (368)
                      .++|+|.||-....  .     .++++-|++.|..   -..+.|     ++..+-|.|||.|.+.++|..||..||...+
T Consensus        15 s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-----~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~   89 (112)
T 2dit_A           15 ERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-----FDRHPDGVASVSFRDPEEADYCIQTLDGRWF   89 (112)
T ss_dssp             CCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-----ETTCTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred             ceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-----ecCCCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence            67899999932221  0     1244455555443   122222     2334689999999999999999999999987


Q ss_pred             eecCCceeeeccCCCC
Q 017670          273 LLSNGRPLLGSIGTPC  288 (368)
Q Consensus       273 ~ls~GRPL~~S~g~~~  288 (368)
                         +||+|......+.
T Consensus        90 ---~gr~l~v~~a~~~  102 (112)
T 2dit_A           90 ---GGRQITAQAWDGT  102 (112)
T ss_dssp             ---TTEECEEEECCSC
T ss_pred             ---CCcEEEEEEeCCC
Confidence               9999999887664

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=98.30  E-value=9.1e-07  Score=69.98  Aligned_cols=73  Identities=16%  Similarity=0.172  Sum_probs=58.7

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      .++.|+|.||.+.+|.+||+++|...+. -..++++. ...++.+.|.|||-|.+.++|..|+..||+..|   +||.
T Consensus        87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~-i~~~~i~~-~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~  159 (167)
T 1fxl_A           87 RDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKP---SGAT  159 (167)
T ss_dssp             TTCEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEE-CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC---TTCS
T ss_pred             CCCcEEECCCCCcCCHHHHHHHHHhcCC-EeEEEEEe-cCCCCCccceEEEEeCCHHHHHHHHHHhcCCcc---CCCc
Confidence            4678999999999999999999987654 33344432 233456789999999999999999999999977   8864

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=98.29  E-value=1.6e-06  Score=75.94  Aligned_cols=80  Identities=15%  Similarity=0.203  Sum_probs=62.7

Q ss_pred             HhcccEEEEecCCCCCCchHHHHHHHHHhhc---cceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecC
Q 017670          200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKE---NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN  276 (368)
Q Consensus       200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke---~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~  276 (368)
                      ....+.|||.||.+.+|.+||++.+.+.|..   -...+++.    +..+-|.|||.|.+.++|..||..||+..|   +
T Consensus         6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~   78 (282)
T 3pgw_A            6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR----SLKMRGQAFVIFKEVSSATNALRSMQGFPF---Y   78 (282)
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC----CCCcceEEEEEECCHHHHHHHHHHhcCCee---C
Confidence            3457899999999999999998555554433   22333332    567789999999999999999999999777   9


Q ss_pred             CceeeeccCC
Q 017670          277 GRPLLGSIGT  286 (368)
Q Consensus       277 GRPL~~S~g~  286 (368)
                      ||+|......
T Consensus        79 g~~l~v~~a~   88 (282)
T 3pgw_A           79 DKPMRIQYAK   88 (282)
T ss_pred             CcEEEEEEec
Confidence            9999877663

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.26  E-value=9e-07  Score=73.16  Aligned_cols=81  Identities=14%  Similarity=0.024  Sum_probs=64.0

Q ss_pred             hcccEEEE--ecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhcccee--eecC
Q 017670          201 EHGTLVVL--ENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL--LLSN  276 (368)
Q Consensus       201 E~GtlV~L--qNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL--~ls~  276 (368)
                      +-.+.||+  .||.+.+|.+|++++|.+-+.... +.|++       .-|.|||.|.+.++|+.||..||+.-|  .+..
T Consensus        23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~-v~i~~-------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~   94 (114)
T 2cq2_A           23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDA-LLMPP-------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ   94 (114)
T ss_dssp             SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEE-EECCT-------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred             CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEE-EEEeC-------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence            44678999  559999999999999999885543 44432       248999999999999999999999744  2446


Q ss_pred             CceeeeccCCCCC
Q 017670          277 GRPLLGSIGTPCF  289 (368)
Q Consensus       277 GRPL~~S~g~~~~  289 (368)
                      |+||+-.......
T Consensus        95 g~~l~v~~a~~~p  107 (114)
T 2cq2_A           95 KITLYLNFVEKVQ  107 (114)
T ss_dssp             EEECEEEEESCCC
T ss_pred             CcEEEEEecccCc
Confidence            9999988765433

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=98.26  E-value=1.9e-06  Score=75.47  Aligned_cols=75  Identities=15%  Similarity=0.115  Sum_probs=61.5

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecC-Cce
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN-GRP  279 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~-GRP  279 (368)
                      ..++.|||.||.+.+|.+||.++|...+. -..+++++.      ..|.|||.|.+.++|..||..||+..|   + ||+
T Consensus       205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~-i~~v~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~---~~g~~  274 (282)
T 3pgw_A          205 PPNHILFLTNLPEETNELMLSMLFNQFPG-FKEVRLVPG------RHDIAFVEFDNEVQAGAARDALQGFKI---TQNNA  274 (282)
T ss_pred             CCCCEEEEeCCCCcCCHHHHHHHHHhcCC-eEEEEEecC------CCcEEEEEeCCHHHHHHHHHHcCCcEe---CCCCE
Confidence            45789999999999999999999987544 334455421      148999999999999999999999877   6 999


Q ss_pred             eeeccC
Q 017670          280 LLGSIG  285 (368)
Q Consensus       280 L~~S~g  285 (368)
                      |..+.+
T Consensus       275 l~v~~a  280 (282)
T 3pgw_A          275 MKISFA  280 (282)
T ss_pred             EEEEEe
Confidence            987654

>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.23  E-value=1.7e-06  Score=64.48  Aligned_cols=80  Identities=14%  Similarity=0.150  Sum_probs=60.4

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ...+.|||.||.+.+|.+||+++|...+. -..++++.      .+-|.|||.|.+.++|+.|+    ..-+.+ +|++|
T Consensus         3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~i~~------~~~g~afV~f~~~~~a~~~~----~~~~~~-~g~~l   70 (88)
T 1wf0_A            3 SGSSGVFVGRCTGDMTEDELREFFSQYGD-VMDVFIPK------PFRAFAFVTFADDQIAQSLC----GEDLII-KGISV   70 (88)
T ss_dssp             SCCCEEEEESCCSSSCHHHHHHHSTTTSC-CCEEECCS------SCCSCCEEECSCHHHHHHTT----TCEEEE-TTEEE
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHcCC-eeEEEEec------CCCCEEEEEECCHHHHHHHh----cCCcee-CCEEE
Confidence            45789999999999999999999987554 34444442      26799999999999998653    333333 99999


Q ss_pred             eeccCCCCCCCC
Q 017670          281 LGSIGTPCFTGK  292 (368)
Q Consensus       281 ~~S~g~~~~p~k  292 (368)
                      ..+.+.+.....
T Consensus        71 ~v~~a~~~~~~~   82 (88)
T 1wf0_A           71 HISNAEPKHNSN   82 (88)
T ss_dssp             EEECCCCCCCCC
T ss_pred             EEEecCCCCCCC
Confidence            988887765543

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=98.17  E-value=2.7e-06  Score=75.11  Aligned_cols=76  Identities=20%  Similarity=0.193  Sum_probs=62.6

Q ss_pred             HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      ...++.|||.||.+.+|.+||.++|...+. -..++++       ++-|.|||.|.+.++|..||..||+..|   +||+
T Consensus        19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~i~-------~~kg~afV~f~~~~~A~~A~~~l~g~~i---~g~~   87 (261)
T 3sde_A           19 YTQRCRLFVGNLPTDITEEDFKRLFERYGE-PSEVFIN-------RDRGFGFIRLESRTLAEIAKAELDGTIL---KSRP   87 (261)
T ss_dssp             SCGGGEEEEESCCTTCCHHHHHHHTGGGCC-CSEEEEE-------TTTTEEEEECSSHHHHHHHHHHHTTCEE---TTEE
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHhcCC-EEEEEEe-------CCCcEEEEEECCHHHHHHHHHHcCCcEE---CCce
Confidence            456789999999999999999999977554 3334442       4479999999999999999999999987   9999


Q ss_pred             eeeccCC
Q 017670          280 LLGSIGT  286 (368)
Q Consensus       280 L~~S~g~  286 (368)
                      |......
T Consensus        88 l~v~~a~   94 (261)
T 3sde_A           88 LRIRFAT   94 (261)
T ss_dssp             CEEEECC
T ss_pred             eEeeecc
Confidence            8766543

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=98.16  E-value=4.1e-06  Score=66.78  Aligned_cols=82  Identities=13%  Similarity=0.044  Sum_probs=55.8

Q ss_pred             cccEEEEecCC-CC-C---CchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecC
Q 017670          202 HGTLVVLENLD-PS-Y---TSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN  276 (368)
Q Consensus       202 ~GtlV~LqNLD-ps-~---ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~  276 (368)
                      ..++|+|.||- |. +   +.+||+++|..-| .-..++++.....+....|.|||.|.+.++|..|+..||+..+   +
T Consensus         7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G-~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~---~   82 (105)
T 2pe8_A            7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYG-KVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF---G   82 (105)
T ss_dssp             CCSEEEEESSSCSCCC---CHHHHHHHGGGGS-CEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE---T
T ss_pred             CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcC-CEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE---C
Confidence            46899999994 21 1   3344444444322 2223333221112245679999999999999999999999988   9


Q ss_pred             CceeeeccCCC
Q 017670          277 GRPLLGSIGTP  287 (368)
Q Consensus       277 GRPL~~S~g~~  287 (368)
                      ||+|.++...+
T Consensus        83 Gr~i~v~~a~~   93 (105)
T 2pe8_A           83 GRVVKACFYNL   93 (105)
T ss_dssp             TEECEEEECCH
T ss_pred             CcEEEEEEcCH
Confidence            99999887654

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=98.15  E-value=5.2e-06  Score=66.03  Aligned_cols=81  Identities=20%  Similarity=0.172  Sum_probs=52.9

Q ss_pred             ccEEEEecC-CCCCCch-----HHHHHHHHHhh---ccceecccCCccc--CCCCCceEEEEEechHHHHHHHHhhccce
Q 017670          203 GTLVVLENL-DPSYTST-----VVEDLVWHAFK---ENCSAKMIPRVAF--ASPYFGQSFVIFKTREVAELVVTKLEEGC  271 (368)
Q Consensus       203 GtlV~LqNL-Dps~ts~-----dVedLi~~a~k---e~c~AkmI~~~~y--s~p~sG~A~VIF~treaAdsAi~Kln~~c  271 (368)
                      -++|.|.|+ +|.--.+     |+++=+++.|.   .-..++ |++..-  ..+..|.|||-|.+.++|..|+..||+..
T Consensus         5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~-i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~   83 (105)
T 3v4m_A            5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIE-IPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK   83 (105)
T ss_dssp             CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEE-CCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred             CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEE-EeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence            368999997 3322111     12222333322   222332 333332  23678999999999999999999999998


Q ss_pred             eeecCCceeeeccCCC
Q 017670          272 LLLSNGRPLLGSIGTP  287 (368)
Q Consensus       272 L~ls~GRPL~~S~g~~  287 (368)
                      +   +||+|.++...+
T Consensus        84 f---~GR~i~v~~~~~   96 (105)
T 3v4m_A           84 F---ANRVVVTKYCDP   96 (105)
T ss_dssp             E---TTEECEEEEECH
T ss_pred             e---CCCEEEEEEeCH
Confidence            8   999999887543

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=98.11  E-value=5.4e-06  Score=72.69  Aligned_cols=78  Identities=12%  Similarity=-0.017  Sum_probs=61.0

Q ss_pred             cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeec
Q 017670          204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS  283 (368)
Q Consensus       204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S  283 (368)
                      ..|||.||.+.+|.+||+++|..-+... .++++     ...+-|.|||.|.+.++|+.|+..||+..| ..+||+|.-.
T Consensus        47 l~l~VgNL~~~vted~L~~~Fs~fG~V~-~V~i~-----~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i-~g~g~~L~V~  119 (164)
T 1sjr_A           47 LRIIVENLFYPVTLDVLHQIFSKFGTVL-KIITF-----TKNNQFQALLQYADPVSAQHAKLSLDGQNI-YNACCTLRID  119 (164)
T ss_dssp             EEEEECSCCSCCCHHHHHHHHHHHSCEE-EEEEE-----ESSSCEEEEEEESCHHHHHHHHHHSTTBCS-SSSCSCEEEE
T ss_pred             EEEEEeCcCCCCCHHHHHHHHHhcCCEE-EEEEE-----eCCCCCEEEEEECCHHHHHHHHHHhCCCEe-cCCCcEEEEE
Confidence            4689999999999999999998876643 23332     233467999999999999999999999877 2234998876


Q ss_pred             cCCCC
Q 017670          284 IGTPC  288 (368)
Q Consensus       284 ~g~~~  288 (368)
                      ...+.
T Consensus       120 ~Ak~~  124 (164)
T 1sjr_A          120 FSKLT  124 (164)
T ss_dssp             ECSSS
T ss_pred             EecCC
Confidence            66544

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.09  E-value=7.2e-06  Score=68.15  Aligned_cols=73  Identities=19%  Similarity=0.111  Sum_probs=58.1

Q ss_pred             EEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCc-eEEEEEechHHHHHHHHhhccceeeecCC--ceee
Q 017670          205 LVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFG-QSFVIFKTREVAELVVTKLEEGCLLLSNG--RPLL  281 (368)
Q Consensus       205 lV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG-~A~VIF~treaAdsAi~Kln~~cL~ls~G--RPL~  281 (368)
                      .|||.||.+.+|.+++++||..-+.. ..++|+.+       .| +|||.|.+.++|..|+..||+.-|   +|  |+|.
T Consensus        27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V-~~v~i~~~-------~Gf~aFVef~~~~~A~~A~~~LnG~~i---~g~~~~l~   95 (124)
T 2e5i_A           27 LLSIQNPLYPITVDVLYTVCNPVGKV-QRIVIFKR-------NGIQAMVEFESVLCAQKAKAALNGADI---YAGCCTLK   95 (124)
T ss_dssp             EEEEESCCSCCCHHHHHHHHTTTSCE-EEEEEEES-------SSEEEEEEESSHHHHHHHHHHHTTCCC---BTTBSEEE
T ss_pred             EEEEcCcCCCCCHHHHHHHHHhcCCE-EEEEEEeC-------CCCEEEEEECCHHHHHHHHHHhCCCEe---cCCCeEEE
Confidence            36899999999999999999976654 33444432       38 699999999999999999999987   66  6887


Q ss_pred             eccCCCC
Q 017670          282 GSIGTPC  288 (368)
Q Consensus       282 ~S~g~~~  288 (368)
                      -..+.+.
T Consensus        96 V~~Ak~~  102 (124)
T 2e5i_A           96 IEYARPT  102 (124)
T ss_dssp             EECCSCS
T ss_pred             EEEecCC
Confidence            7666443

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}

Probab=98.07  E-value=9.9e-06  Score=61.74  Aligned_cols=80  Identities=19%  Similarity=0.195  Sum_probs=56.9

Q ss_pred             HHHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecC
Q 017670          197 RVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN  276 (368)
Q Consensus       197 r~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~  276 (368)
                      ..+...++.|||.||.+..|.+||+++|...+. -..++++.    +  +-|.|||.|.+.++|+.    +++.-+. -+
T Consensus         5 ~~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~-i~~v~i~~----~--srGfaFV~F~~~~~A~~----~~~~~~~-~~   72 (89)
T 3d2w_A            5 HHHHHHGSKVFVGRCTEDMTAEELQQFFCQYGE-VVDVFIPK----P--FRAFAFVTFADDKVAQS----LCGEDLI-IK   72 (89)
T ss_dssp             ------CCEEEEESCCTTCCHHHHHHHHTTTSC-EEEEECCS----S--CCSEEEEEESCHHHHHH----HTTCEEE-ET
T ss_pred             CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCC-EEEEEEee----C--CCCEEEEEECCHHHHHH----HcCCCcc-cC
Confidence            445678899999999999999999999988654 33444443    1  56999999999999983    5555443 38


Q ss_pred             CceeeeccCCCC
Q 017670          277 GRPLLGSIGTPC  288 (368)
Q Consensus       277 GRPL~~S~g~~~  288 (368)
                      ||+|..+.+.+.
T Consensus        73 g~~v~v~~a~~k   84 (89)
T 3d2w_A           73 GISVHISNAEPK   84 (89)
T ss_dssp             TEEEEEEECC--
T ss_pred             CEEEEEEEcCCC
Confidence            999998877654

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A

Probab=98.00  E-value=8.8e-06  Score=70.47  Aligned_cols=80  Identities=15%  Similarity=0.135  Sum_probs=62.2

Q ss_pred             HHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCc
Q 017670          199 AHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR  278 (368)
Q Consensus       199 A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GR  278 (368)
                      ....++.||+.||.+..|.++|+++|...+.. ..++|+...  +..+.|.|||.|.+.++|..||..++. -+   +||
T Consensus       105 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v-~~v~i~~~~--~~~~kG~aFVeF~~~e~A~~A~~~~~~-~~---~Gr  177 (193)
T 2voo_A          105 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQV-LNIQMRRTL--HKAFKGSIFVVFDSIESAKKFVETPGQ-KY---KET  177 (193)
T ss_dssp             HHHHHTEEEEECCCTTCCHHHHHHHHTTSCCE-EEEEEEECT--TCCEEEEEEEEESSHHHHHHHHHCTTC-EE---TTE
T ss_pred             hccccCEEEecCCCCcCCHHHHHHHHhcCCCE-EEEEEEECC--CCCcccEEEEEECCHHHHHHHHHhCCC-eE---CCE
Confidence            34567899999999999999999999886653 344444322  366789999999999999999987753 34   999


Q ss_pred             eeeeccC
Q 017670          279 PLLGSIG  285 (368)
Q Consensus       279 PL~~S~g  285 (368)
                      +|.....
T Consensus       178 ~l~V~~~  184 (193)
T 2voo_A          178 DLLILFK  184 (193)
T ss_dssp             ECEEEET
T ss_pred             EEEEEEh
Confidence            9986543

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=97.84  E-value=1.4e-05  Score=73.44  Aligned_cols=80  Identities=16%  Similarity=0.174  Sum_probs=64.1

Q ss_pred             HhcccEEEEecCCCCC---------CchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccc
Q 017670          200 HEHGTLVVLENLDPSY---------TSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEG  270 (368)
Q Consensus       200 ~E~GtlV~LqNLDps~---------ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~  270 (368)
                      ....+.|||.||.+.+         |.++|+++|.+-+ +--.+++++       +-|.|||.|.++++|+.|+..|++.
T Consensus       131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG-~I~~v~v~~-------~kG~AFV~F~~~~~Ae~A~~am~g~  202 (240)
T 3u1l_A          131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLG-DIDRIRYVE-------SKNCGFVKFKYQANAEFAKEAMSNQ  202 (240)
T ss_dssp             CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTS-CEEEEEEEG-------GGTEEEEEESSHHHHHHHHHHHTTC
T ss_pred             ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccC-CEEEEEEEC-------CCCEEEEEeCCHHHHHHHHHHhCCC
Confidence            4578999999999998         6788888887644 444556653       4699999999999999999999998


Q ss_pred             eeeec---------CCceeeeccCCC
Q 017670          271 CLLLS---------NGRPLLGSIGTP  287 (368)
Q Consensus       271 cL~ls---------~GRPL~~S~g~~  287 (368)
                      .|+++         +||+|....+..
T Consensus       203 ~l~~~~~~e~~~~~~gr~L~V~wA~~  228 (240)
T 3u1l_A          203 TLLLPSDKEWDDRREGTGLLVKWANE  228 (240)
T ss_dssp             CCCCTTSTTGGGGGGSCCCEEEECC-
T ss_pred             EEeccccccccccCCCCEEEEEEccC
Confidence            87542         799999877753

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A

Probab=97.82  E-value=2.3e-05  Score=64.10  Aligned_cols=82  Identities=18%  Similarity=0.207  Sum_probs=55.5

Q ss_pred             cccEEEEecC-CCCCCchHHHHHHHHHhhc---cceecccCCcccC----CCCCceEEEEEechHHHHHHHHhhccceee
Q 017670          202 HGTLVVLENL-DPSYTSTVVEDLVWHAFKE---NCSAKMIPRVAFA----SPYFGQSFVIFKTREVAELVVTKLEEGCLL  273 (368)
Q Consensus       202 ~GtlV~LqNL-Dps~ts~dVedLi~~a~ke---~c~AkmI~~~~ys----~p~sG~A~VIF~treaAdsAi~Kln~~cL~  273 (368)
                      ..++|+|.|+ +|.=-.+||++=|++.|..   -..++ |+.....    .+..|.|||.|.+.++|..|+..||+..+ 
T Consensus        19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~-I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f-   96 (118)
T 3ue2_A           19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVI-IYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF-   96 (118)
T ss_dssp             SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEE-EEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEE-EeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE-
Confidence            5789999998 2221123456555555543   22232 2222221    23348999999999999999999999988 


Q ss_pred             ecCCceeeeccCCC
Q 017670          274 LSNGRPLLGSIGTP  287 (368)
Q Consensus       274 ls~GRPL~~S~g~~  287 (368)
                        +||+|.++....
T Consensus        97 --~GR~i~v~~~~~  108 (118)
T 3ue2_A           97 --AGRKVVAEVYDQ  108 (118)
T ss_dssp             --TTEECEEEEECH
T ss_pred             --CCcEEEEEEcCh
Confidence              999999887544

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=97.81  E-value=2.2e-05  Score=66.31  Aligned_cols=77  Identities=12%  Similarity=-0.017  Sum_probs=58.5

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCC--ce
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG--RP  279 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G--RP  279 (368)
                      .=..|||.||.+.+|.+++++||..-+.. ..++|+.+     +.-++|||.|.+.++|..|+..||..-|   +|  ++
T Consensus        27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V-~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i---~g~~~~   97 (130)
T 3zzy_A           27 PVLRIIVENLFYPVTLDVLHQIFSKFGTV-LKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNI---YNACCT   97 (130)
T ss_dssp             SEEEEEEESCCSCCCHHHHHHHHTTSSCE-EEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEE---ETTEEE
T ss_pred             ceEEEEECCCCCCCCHHHHHHHHhCcCCE-EEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCee---cCCCcE
Confidence            33567799999999999999999876654 33455432     2223699999999999999999999887   55  77


Q ss_pred             eeeccCCC
Q 017670          280 LLGSIGTP  287 (368)
Q Consensus       280 L~~S~g~~  287 (368)
                      |--....+
T Consensus        98 LrI~~ak~  105 (130)
T 3zzy_A           98 LRIDFSKL  105 (130)
T ss_dssp             EEEEECSC
T ss_pred             EEEEecCC
Confidence            76555543

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3

Probab=97.65  E-value=0.00012  Score=57.98  Aligned_cols=38  Identities=29%  Similarity=0.525  Sum_probs=34.3

Q ss_pred             CCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeecc
Q 017670          244 SPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSI  284 (368)
Q Consensus       244 ~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S~  284 (368)
                      ....|.|||.|.+.++|..|+..||+..+   +||+|.+..
T Consensus        65 ~~~~G~~fV~f~~~~~A~~A~~~lng~~~---~Gr~i~v~~  102 (104)
T 1jmt_A           65 DHLVGNVYVKFRREEDAEKAVIDLNNRWF---NGQPIHAEL  102 (104)
T ss_dssp             SSSEEEEEEEESCHHHHHHHHHHHTTCEE---TTEECCEEE
T ss_pred             CCccEEEEEEECCHHHHHHHHHHHCCCEE---CCEEEEEEE
Confidence            45689999999999999999999999988   999998654

>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.59  E-value=6.3e-05  Score=63.21  Aligned_cols=73  Identities=14%  Similarity=0.070  Sum_probs=54.8

Q ss_pred             HhcccEEEEecCCCC-CCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEec-hHHHHHHHHhhccceeeecCC
Q 017670          200 HEHGTLVVLENLDPS-YTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKT-REVAELVVTKLEEGCLLLSNG  277 (368)
Q Consensus       200 ~E~GtlV~LqNLDps-~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~t-reaAdsAi~Kln~~cL~ls~G  277 (368)
                      +..|.+|||.||.+. .+-+||.++|.+. .+--++.++.       -.-.|||-|.+ .++|..|+.+||++-+.+ +|
T Consensus        15 ~~~G~il~v~~l~~~~~sredLke~F~~~-G~V~~Vd~~~-------g~~tgfVrf~~~~~~A~~av~~ln~~~~~i-~g   85 (121)
T 1owx_A           15 EKIGCLLKFSGDLDDQTCREDLHILFSNH-GEIKWIDFVR-------GAKEGIILFKEKAKEALGKAKDANNGNLQL-RN   85 (121)
T ss_dssp             CCCCCEEEEEESCCSSCCHHHHHHHTCSS-CCEEEEECCT-------TCSEEEEEESSCHHHHHHHHHHTTTSCBCT-TS
T ss_pred             ccCCeEEEEecCCCCcCCHHHHHHHHHhc-CCEEEEEEec-------CCCEEEEEECCChHHHHHHHHHhhcCCcEE-eC
Confidence            568999999999999 9989999988763 3322222221       22259999999 799999999999998877 44


Q ss_pred             ceee
Q 017670          278 RPLL  281 (368)
Q Consensus       278 RPL~  281 (368)
                      ..+.
T Consensus        86 ~~~~   89 (121)
T 1owx_A           86 KEVT   89 (121)
T ss_dssp             SSEE
T ss_pred             cEEE
Confidence            4443

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A

Probab=97.55  E-value=0.00018  Score=58.68  Aligned_cols=75  Identities=16%  Similarity=0.124  Sum_probs=50.6

Q ss_pred             ccEEEEecCCCCCC------chHHHHHHHHHhhc---cceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceee
Q 017670          203 GTLVVLENLDPSYT------STVVEDLVWHAFKE---NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLL  273 (368)
Q Consensus       203 GtlV~LqNLDps~t------s~dVedLi~~a~ke---~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~  273 (368)
                      .++|+|.|+=-.-.      -.||++=|++.|..   -..+++ ++    +..-|.|||-|.+.++|..|+..||+..+ 
T Consensus         7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i-~~----~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f-   80 (114)
T 3s6e_A            7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYV-DK----NSAQGNVYVKCPSIAAAIAAVNALHGRWF-   80 (114)
T ss_dssp             CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEE-CT----TCTTCCEEEECSSHHHHHHHHHHHTTCEE-
T ss_pred             CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEE-ec----CCCcEEEEEEECCHHHHHHHHHHhCCCEE-
Confidence            57899999732221      23444444444432   112211 22    12479999999999999999999999988 


Q ss_pred             ecCCceeeeccC
Q 017670          274 LSNGRPLLGSIG  285 (368)
Q Consensus       274 ls~GRPL~~S~g  285 (368)
                        +||+|.++..
T Consensus        81 --~GR~i~v~~~   90 (114)
T 3s6e_A           81 --AGKMITAAYV   90 (114)
T ss_dssp             --TTEECEEEEE
T ss_pred             --CCEEEEEEEE
Confidence              9999997764

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=97.51  E-value=0.00014  Score=69.95  Aligned_cols=78  Identities=15%  Similarity=0.083  Sum_probs=63.0

Q ss_pred             HhcccEEEEec--CCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCC
Q 017670          200 HEHGTLVVLEN--LDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG  277 (368)
Q Consensus       200 ~E~GtlV~LqN--LDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G  277 (368)
                      -+-...|||.|  |.+++|.+||+++|.+-+.-. .++|.+       .-|.|||.|.+.++|..||..||+.-++-..|
T Consensus        15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~-~v~~~~-------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g   86 (345)
T 3tht_A           15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVD-ALLMPP-------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG   86 (345)
T ss_dssp             SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEE-EEECCT-------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred             CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeE-EEEEeC-------CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence            45567899999  578999999999999976553 354433       34999999999999999999999998865557


Q ss_pred             c--eeeeccC
Q 017670          278 R--PLLGSIG  285 (368)
Q Consensus       278 R--PL~~S~g  285 (368)
                      |  ||+-++.
T Consensus        87 ~~~~ly~~~~   96 (345)
T 3tht_A           87 QKITLYLNFV   96 (345)
T ss_dssp             CEEECEEEEC
T ss_pred             CceEEEEEEe
Confidence            7  8877765

>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}

Probab=97.34  E-value=0.00026  Score=61.54  Aligned_cols=75  Identities=7%  Similarity=0.012  Sum_probs=57.5

Q ss_pred             cEEEEecC----CCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEec-----hHH---HHHHHH--hhcc
Q 017670          204 TLVVLENL----DPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKT-----REV---AELVVT--KLEE  269 (368)
Q Consensus       204 tlV~LqNL----Dps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~t-----rea---AdsAi~--Kln~  269 (368)
                      +-||+.||    +|..|..+|.++|.. |++--.+++|.. +.+..+-|-|||.|..     -++   |..||.  .+|+
T Consensus         3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~-fGeV~~~~li~D-p~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng   80 (136)
T 2j8a_A            3 CEIVVYPAQDSTTTNIQDISIKNYFKK-YGEISHFEAFND-PNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSG   80 (136)
T ss_dssp             CEEEEEESSSSCCCCCCHHHHHHHHHT-TSCCSEEEEEEC-TTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTC
T ss_pred             cEEEEeCCCCCCCCCCCHHHHHHHHHh-cCCeEEEEEEec-CCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcC
Confidence            78999999    999999999999996 446555544432 2234566899999995     333   899999  7888


Q ss_pred             ceeeecCCceeeec
Q 017670          270 GCLLLSNGRPLLGS  283 (368)
Q Consensus       270 ~cL~ls~GRPL~~S  283 (368)
                      .+|   +||+|-..
T Consensus        81 ~~I---~Gr~irV~   91 (136)
T 2j8a_A           81 CFI---MGFKFEVI   91 (136)
T ss_dssp             EEE---TTEEEEEE
T ss_pred             Cee---cCcEEEEE
Confidence            888   99999854

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.33  E-value=0.00056  Score=54.52  Aligned_cols=68  Identities=24%  Similarity=0.098  Sum_probs=53.5

Q ss_pred             CCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeeccCCCCCCCC
Q 017670          213 PSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGK  292 (368)
Q Consensus       213 ps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S~g~~~~p~k  292 (368)
                      +.+|.+||+++|.+.+. -..++|+      ..+-|.|||.|.+.++|+.||..++.  +   .||||....+.+..+.+
T Consensus        27 ~~~te~~L~~~F~~~G~-V~~v~i~------~~~rGfaFVeF~~~~~A~~Ai~~~~~--~---~g~~l~V~~a~~~~~~~   94 (100)
T 2d9o_A           27 GGYSKDVLLRLLQKYGE-VLNLVLS------SKKPGTAVVEFATVKAAELAVQNEVG--L---VDNPLKISWLEGQPQDA   94 (100)
T ss_dssp             CSCCHHHHHHHHHTTSC-EEEEEEE------SSSSSEEEEEESCHHHHHHHHHTCCB--C---SSSBCEEECSSCCCCCC
T ss_pred             CCCCHHHHHHHHHhcCC-EEEEEEc------cCCCCEEEEEECCHHHHHHHHHhcCC--C---CCCeEEEEEccCCCCCC
Confidence            67899999999988665 3445554      35679999999999999999999544  2   69999988877665444

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=95.65  E-value=0.015  Score=49.81  Aligned_cols=82  Identities=17%  Similarity=0.207  Sum_probs=53.9

Q ss_pred             cccEEEEecC-CCCCCchHHHHHHHHHhhc---cceecccCCcccCC----CCCceEEEEEechHHHHHHHHhhccceee
Q 017670          202 HGTLVVLENL-DPSYTSTVVEDLVWHAFKE---NCSAKMIPRVAFAS----PYFGQSFVIFKTREVAELVVTKLEEGCLL  273 (368)
Q Consensus       202 ~GtlV~LqNL-Dps~ts~dVedLi~~a~ke---~c~AkmI~~~~ys~----p~sG~A~VIF~treaAdsAi~Kln~~cL~  273 (368)
                      ..+++.|.|+ ++.-..+|+++-+++.|..   --.++++ +..-..    +..|.+||.|.+-++|..||..||+..+ 
T Consensus       123 ~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~-~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~-  200 (222)
T 3dxb_A          123 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIY-QEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF-  200 (222)
T ss_dssp             BCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEE-EEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS-
T ss_pred             ccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEe-cCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE-
Confidence            4567777765 3333334455444443332   2233332 222122    5668999999999999999999999988 


Q ss_pred             ecCCceeeeccCCC
Q 017670          274 LSNGRPLLGSIGTP  287 (368)
Q Consensus       274 ls~GRPL~~S~g~~  287 (368)
                        +||+|.++....
T Consensus       201 --~gr~i~~~~~~~  212 (222)
T 3dxb_A          201 --AGRKVVAEVYDQ  212 (222)
T ss_dssp             --SSSBCEEEECCH
T ss_pred             --CCeEEEEEEcCH
Confidence              999999887543

>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.83  E-value=0.062  Score=43.65  Aligned_cols=57  Identities=16%  Similarity=0.105  Sum_probs=44.2

Q ss_pred             hHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeeccCCCC
Q 017670          218 TVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPC  288 (368)
Q Consensus       218 ~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S~g~~~  288 (368)
                      .++.+.|.+.+ +-..+|+|-         +++||.|...+.|..||. ||...|   +||.|.=...+|-
T Consensus        30 ~~L~~~F~~~G-~Vi~vr~~~---------d~~fVtF~d~~sAlaAi~-mnG~~v---~Gr~LkV~lkt~d   86 (91)
T 2dnr_A           30 DELLQQFASFG-EVILIRFVE---------DKMWVTFLEGSSALNVLS-LNGKEL---LNRTITIALKSPS   86 (91)
T ss_dssp             HHHHHHHHTTC-CEEEEEECS---------SSEEEEESSHHHHHHGGG-GTTCEE---TTEEEEEEECCCS
T ss_pred             HHHHHHHHhCC-CeEEEEEec---------CCEEEEECChHHHHHHHh-cCCeEe---CCeEEEEEeCCCC
Confidence            45566666633 666676665         459999999999999998 999998   9999986665553

>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.94  E-value=0.16  Score=41.68  Aligned_cols=64  Identities=16%  Similarity=0.067  Sum_probs=46.7

Q ss_pred             EEEEecCCCC-----CCc----hHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeec
Q 017670          205 LVVLENLDPS-----YTS----TVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLS  275 (368)
Q Consensus       205 lV~LqNLDps-----~ts----~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls  275 (368)
                      .|+++.+.++     +-.    .+|.+.|.+.+ +-..+|+|.-.         +||.|...+.|..||+ ||...+   
T Consensus        17 Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G-~Vilvr~v~d~---------~fVtF~d~~sAl~AI~-ldG~~v---   82 (95)
T 1ufw_A           17 TVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYG-TIVLVRINQGQ---------MLVTFADSHSALSVLD-VDGMKV---   82 (95)
T ss_dssp             EEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHS-CCSEEEEETTE---------EEEECSCSHHHHHHHH-GGGSEE---
T ss_pred             eEEEEecCCcccccccCCHHHHHHHHHHHHHCC-CEEEEEEecCc---------EEEEEcChHHHHHHHh-cCCeee---
Confidence            3556666543     333    44666777744 55566665443         9999999999999998 999999   


Q ss_pred             CCceeee
Q 017670          276 NGRPLLG  282 (368)
Q Consensus       276 ~GRPL~~  282 (368)
                      +||.|.=
T Consensus        83 ~Gr~L~V   89 (95)
T 1ufw_A           83 KGRAVKI   89 (95)
T ss_dssp             TTEEEEE
T ss_pred             CCeEEEE
Confidence            9999873

>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4

Probab=91.94  E-value=0.31  Score=39.16  Aligned_cols=65  Identities=15%  Similarity=0.262  Sum_probs=48.9

Q ss_pred             cEEEEecCCCCCCchHHHHHHHHHhhc----cceecccCCcccCCCCCceEEEEEechHHHHHHHHhhcccee
Q 017670          204 TLVVLENLDPSYTSTVVEDLVWHAFKE----NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL  272 (368)
Q Consensus       204 tlV~LqNLDps~ts~dVedLi~~a~ke----~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL  272 (368)
                      |.|.|.+|-|++|.++..+.|......    =|-++    .+...+-+.+|++.|++.+++.....++++...
T Consensus         2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~----~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F   70 (91)
T 1uw4_A            2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSND----TSLYPHMYARAYINFKNQEDIILFRDRFDGYVF   70 (91)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESC----CSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred             cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCc----cCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence            689999999999999999888764422    11111    112235668999999999999999999987754

>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*

Probab=88.05  E-value=0.47  Score=39.51  Aligned_cols=54  Identities=11%  Similarity=0.079  Sum_probs=43.7

Q ss_pred             cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhc
Q 017670          204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLE  268 (368)
Q Consensus       204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln  268 (368)
                      -+++| ++-+.+.-.||+.||+.-+  ....+-        -+-.+|||+|.+++.|..|+.-++
T Consensus        17 HVf~l-~FP~ewKt~DI~~lFs~fg--gv~I~W--------idDTsAlvvf~~~~~a~~al~~i~   70 (100)
T 1whv_A           17 HVLHV-TFPKEWKTSDLYQLFSAFG--NIQISW--------IDDTSAFVSLSQPEQVQIAVNTSK   70 (100)
T ss_dssp             SEEEE-ECCTTCCHHHHHHHHTTTC--SCCCEE--------EETTEEEEECSCHHHHHHHHHHHH
T ss_pred             eEEEE-eCChhhhhHHHHHHhhccC--CEEEEE--------EcCCeEEEEecCHHHHHHHHHhcc
Confidence            36788 9999999999999998764  333322        446799999999999999999663

>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=86.28  E-value=1.8  Score=35.92  Aligned_cols=75  Identities=12%  Similarity=0.058  Sum_probs=57.7

Q ss_pred             cEEEEecCCCCC-CchHH----HHHHHHHhhccceecccCCcccCC-CCCceEEEEEechHHHHHHHHhhccceeeecCC
Q 017670          204 TLVVLENLDPSY-TSTVV----EDLVWHAFKENCSAKMIPRVAFAS-PYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG  277 (368)
Q Consensus       204 tlV~LqNLDps~-ts~dV----edLi~~a~ke~c~AkmI~~~~ys~-p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G  277 (368)
                      +-++|.|||+.+ ++++.    |+||+.....         .+|+- +...+..|.|.+.++|..|=-.|.+.-+   .|
T Consensus         6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~---------~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f---~g   73 (104)
T 1wey_A            6 SGLIACVANDDVFSESETRAKFESLFRTYDKD---------TTFQYFKSFKRVRINFSNPLSAADARLRLHKTEF---LG   73 (104)
T ss_dssp             CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSS---------CEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEE---TT
T ss_pred             ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcC---------cceeecCcceEEEEEeCChHHHHHHHHHhcccee---cC
Confidence            568899999865 66655    5666654332         33433 6778999999999999999999999988   89


Q ss_pred             ceeeeccCCCCCC
Q 017670          278 RPLLGSIGTPCFT  290 (368)
Q Consensus       278 RPL~~S~g~~~~p  290 (368)
                      ++|-+=+|-+.++
T Consensus        74 ~~~r~YFgq~~~~   86 (104)
T 1wey_A           74 KEMKLYFAQTLHI   86 (104)
T ss_dssp             EECEEECCCCSSC
T ss_pred             ceeEEEecCCCCC
Confidence            9998888875554

>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}

Probab=85.46  E-value=0.67  Score=38.63  Aligned_cols=56  Identities=13%  Similarity=0.100  Sum_probs=44.8

Q ss_pred             cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccc
Q 017670          204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEG  270 (368)
Q Consensus       204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~  270 (368)
                      -+++| ++-+.+.-.||+.||+.-+  ....+-|        +-.+|||+|.+++.|..|+.-+...
T Consensus         7 HV~~l-~FP~ewKt~Di~~lFs~fg--gv~I~Wi--------dDTsAlvvf~~~~~a~~al~~i~~~   62 (101)
T 3ctr_A            7 HVLHV-TFPKEWKTSDLYQLFSAFG--NIQISWI--------DDTSAFVSLSQPEQVKIAVNTSKYA   62 (101)
T ss_dssp             EEEEE-ECCTTCCHHHHHHHTTTSE--EEEEEEE--------ETTEEEEEEEEECHHHHHHHHHTTC
T ss_pred             eEEEE-eCChhhhhHHHHHHHhccC--CEEEEEE--------cCCeEEEEecCHHHHHHHHHhcccC
Confidence            36778 9999999999999998765  4444333        4678999999999999999976433

>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.75  E-value=2  Score=35.88  Aligned_cols=66  Identities=17%  Similarity=0.127  Sum_probs=46.1

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHH---HhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHh----hccceee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWH---AFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTK----LEEGCLL  273 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~---a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~K----ln~~cL~  273 (368)
                      ..|..|.++||.|....+-++-.|..   -+.--|.-     +.|..   +.|.|.|...++|+.+|++    |++.-|.
T Consensus         6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~-----v~~~~---~~AvItF~d~~va~rVL~k~~H~L~~~~Ls   77 (104)
T 2dhx_A            6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLS-----WQRLG---CGGVLTFREPADAERVLAQADHELHGAQLS   77 (104)
T ss_dssp             CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEE-----EEEET---TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred             cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeE-----EEEcC---CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence            35789999999998865545544433   23333433     44422   8999999999999999999    6665554


Q ss_pred             e
Q 017670          274 L  274 (368)
Q Consensus       274 l  274 (368)
                      |
T Consensus        78 V   78 (104)
T 2dhx_A           78 L   78 (104)
T ss_dssp             E
T ss_pred             E
Confidence            4

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	368
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.1
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	99.1
d2disa1	96	Hypothetical protein FLJ20273 {Human (Homo sapiens	99.07
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	99.07
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	99.07
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.05
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.03
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	99.01
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	99.01
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	98.98
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	98.98
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	98.97
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	98.96
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	98.95
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	98.95
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	98.94
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	98.94
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	98.92
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	98.91
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	98.91
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	98.91
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	98.9
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	98.9
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	98.89
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	98.88
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	98.88
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	98.88
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	98.87
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	98.87
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	98.87
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	98.86
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	98.86
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	98.85
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	98.85
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	98.85
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	98.84
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	98.84
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	98.84
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	98.84
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	98.83
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	98.83
d1u2fa_	90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	98.82
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	98.81
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	98.8
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	98.8
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	98.78
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	98.78
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	98.78
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	98.77
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	98.77
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	98.77
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	98.77
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	98.76
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	98.76
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	98.76
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	98.75
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	98.75
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	98.7
d2cpya1	103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	98.69
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	98.69
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	98.69
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	98.69
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	98.67
d1wg5a_	104	Heterogeneous nuclear ribonucleoprotein H' {Human	98.66
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	98.66
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	98.65
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	98.63
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	98.62
d1wela1	112	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	98.62
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	98.59
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	98.58
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	98.58
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	98.55
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	98.52
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	98.45
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	98.39
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	98.35
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	98.33
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	98.33
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	98.28
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	98.2
d1o0pa_	104	Splicing factor U2AF 65 KDa subunit {Human (Homo s	98.12
d2cq2a1	101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	97.95
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	97.74
d1owxa_	113	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	97.72
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	U2	97.52
d1wwha1	81	Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090	97.5
d1uw4a_	91	RNA processing protein UPF3x, RRM domain {Human (H	90.53

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.3e-10  Score=85.88  Aligned_cols=82  Identities=18%  Similarity=0.166  Sum_probs=67.4

Q ss_pred             EEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeeccC
Q 017670          206 VVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSIG  285 (368)
Q Consensus       206 V~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S~g  285 (368)
                      |||.||.+.+|.+||.++|.+.+......+ |.+......+.|.|||-|.+.++|+.||..||+.-|   +||||..+.+
T Consensus         1 lfV~nLp~~~te~~l~~~F~~~G~i~~~~~-i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~g~~~---~gr~l~v~~a   76 (83)
T d1x5ta1           1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPK-IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYA   76 (83)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTSCBSSCCE-ECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE---TTEECEEEES
T ss_pred             CEEcCCCCcCcHHHHHHHHHHhCceeeeEE-EEeeccccccCceEEEEECCHHHHHHHHHhCCCcEE---CCEEEEEEEe
Confidence            799999999999999999988665422233 444455567889999999999999999999998877   9999999888


Q ss_pred             CCCCCC
Q 017670          286 TPCFTG  291 (368)
Q Consensus       286 ~~~~p~  291 (368)
                      .+..++
T Consensus        77 ~~k~~k   82 (83)
T d1x5ta1          77 FKKDSK   82 (83)
T ss_dssp             CCCCCC
T ss_pred             cCCCcC
Confidence            765543

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=1.3e-10  Score=85.92  Aligned_cols=74  Identities=18%  Similarity=0.142  Sum_probs=62.8

Q ss_pred             EEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeeccC
Q 017670          206 VVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSIG  285 (368)
Q Consensus       206 V~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S~g  285 (368)
                      |||.||++.+|.+||.++|.+.+.. ..++++..  -+..+.|.|||.|.+.++|..||..||+..|   +||||..+.+
T Consensus         3 l~V~nLp~~~~~~~l~~~F~~~G~v-~~~~i~~~--~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~l---~g~~l~V~~a   76 (78)
T d1no8a_           3 LLVSNLDFGVSDADIQELFAEFGTL-KKAAVHYD--RSGRSLGTADVHFERKADALKAMKQYNGVPL---DGRPMNIQLV   76 (78)
T ss_dssp             EEEESCCTTCCHHHHHHHHHHHSCE-EEEEESCS--SCCCSCCEEEEEESCHHHHHHHHHHHTTCEE---TTEECEEEEE
T ss_pred             EEEECCCCCCCHHHHHHHHHHhCCC-eEEEEEEe--eccccceeEEEEECCHHHHHHHHHHhCCCEE---CCEEEEEEEe
Confidence            8999999999999999999998754 45555433  2567789999999999999999999999877   9999986543

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=3.4e-10  Score=86.03  Aligned_cols=86  Identities=13%  Similarity=0.114  Sum_probs=71.6

Q ss_pred             ccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670          203 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG  282 (368)
Q Consensus       203 GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~  282 (368)
                      ++.|||.||.+.+|.+||.++|.+.+..--..+|+........+-|.|||.|.+.++|..||..|++..+++ +||||.-
T Consensus         1 n~rLyV~nLp~~~te~~l~~~f~~~g~~i~~v~~~~~~~~~~~~rg~aFV~F~~~~~A~~Ai~~l~~~~~~~-~g~~i~V   79 (96)
T d2disa1           1 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL-WGHQIAV   79 (96)
T ss_dssp             SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB-TTBCCEE
T ss_pred             CCEEEEcCCCCcCCHHHHHHHHHHhCCcceEEEEeeeccccccCCCeEEEEEcCHHHHHHHHHHHcCCCeEE-CCEEEEE
Confidence            357999999999999999999999885333555665544456788999999999999999999999887766 8999998


Q ss_pred             ccCCCCC
Q 017670          283 SIGTPCF  289 (368)
Q Consensus       283 S~g~~~~  289 (368)
                      ..+.|..
T Consensus        80 ~~A~p~~   86 (96)
T d2disa1          80 DWAEPEI   86 (96)
T ss_dssp             EESCSSC
T ss_pred             EEcCCCC
Confidence            8886543

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.7e-10  Score=87.37  Aligned_cols=89  Identities=13%  Similarity=0.079  Sum_probs=70.0

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhcccee-cccCCc-----ccCCCCCceEEEEEechHHHHHHHHhhccceeee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSA-KMIPRV-----AFASPYFGQSFVIFKTREVAELVVTKLEEGCLLL  274 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~A-kmI~~~-----~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~l  274 (368)
                      ..++.|||.||.+.+|.+||+++|.+.|...... ......     .-...+.|.|||-|.+.++|+.||..||+.-|  
T Consensus         6 ~~~~~i~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~d~~~~~~~g~afV~f~~~~~a~~Ai~~l~g~~~--   83 (101)
T d2cpea1           6 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF--   83 (101)
T ss_dssp             CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE--
T ss_pred             CCCCEEEEECCCCcCCHHHHHHHHHHCceEEEeeecccceeEEeeccccccccceeeEEecCHHHHHHHHHHhCCCEE--
Confidence            4678999999999999999999999887653322 111111     11235678999999999999999999999876  


Q ss_pred             cCCceeeeccCCCCCCCC
Q 017670          275 SNGRPLLGSIGTPCFTGK  292 (368)
Q Consensus       275 s~GRPL~~S~g~~~~p~k  292 (368)
                       +||+|..+.+.+..|..
T Consensus        84 -~gr~i~V~~a~~~~p~~  100 (101)
T d2cpea1          84 -QGSKLKVSLARKKPPMN  100 (101)
T ss_dssp             -TTEECEEECSSCCCCST
T ss_pred             -CCEEEEEEEcCCCCCCC
Confidence             99999999988766643

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.07  E-value=1.3e-10  Score=85.57  Aligned_cols=81  Identities=15%  Similarity=0.131  Sum_probs=67.3

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      .+|.|||.||.+.+|.+||.++|.+.+.. -.++++. ...+..+-|.|||.|.+.++|..||..||+.-|   +||+|.
T Consensus         1 s~t~l~V~nLp~~~t~~~l~~~F~~~G~v-~~~~i~~-~~~~g~~~g~afV~f~~~~~A~~ai~~lng~~~---~g~~l~   75 (82)
T d1b7fa1           1 SNTNLIVNYLPQDMTDRELYALFRAIGPI-NTCRIMR-DYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITV---RNKRLK   75 (82)
T ss_dssp             CCSEEEEECCCTTCCHHHHHHHHHTTSCE-EEEECCE-ETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE---TTEECE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCc-ceeeeee-ecccCCccccceEEECCHHHHHHHHHHhCCCEE---CCEEEE
Confidence            37899999999999999999999987753 3445543 234457788999999999999999999999877   999999


Q ss_pred             eccCCC
Q 017670          282 GSIGTP  287 (368)
Q Consensus       282 ~S~g~~  287 (368)
                      ...+.|
T Consensus        76 v~~a~p   81 (82)
T d1b7fa1          76 VSYARP   81 (82)
T ss_dssp             EEECCC
T ss_pred             EEEcCC
Confidence            887654

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.05  E-value=2.2e-10  Score=84.26  Aligned_cols=79  Identities=20%  Similarity=0.256  Sum_probs=61.9

Q ss_pred             cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeec
Q 017670          204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS  283 (368)
Q Consensus       204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S  283 (368)
                      +.|||.||.+.+|.+||.++|...+...- .+++.. .-.+.+.|.|||.|.+.++|..||..||+.-+   +||||...
T Consensus         2 ~tl~v~nLp~~~t~~~l~~~f~~~G~v~~-~~~~~~-~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~---~g~~i~V~   76 (81)
T d2ghpa1           2 CTLWMTNFPPSYTQRNIRDLLQDINVVAL-SIRLPS-LRFNTSRRFAYIDVTSKEDARYCVEKLNGLKI---EGYTLVTK   76 (81)
T ss_dssp             CEEEEECCCTTCCHHHHHHHHHHTTCCCC-EEECC--------CCEEEEECSSHHHHHHHHHHHTTCEE---TTEECEEE
T ss_pred             cEEEEECCCCcCCHHHHHHHHHHhCcEEe-eeeecc-cccccccceeEEEECCHHHHHHHHHHhCCCEE---CCEEEEEE
Confidence            47999999999999999999999876532 233332 23357789999999999999999999999977   99999987


Q ss_pred             cCCC
Q 017670          284 IGTP  287 (368)
Q Consensus       284 ~g~~  287 (368)
                      ...|
T Consensus        77 ~a~P   80 (81)
T d2ghpa1          77 VSNP   80 (81)
T ss_dssp             ECCC
T ss_pred             EccC
Confidence            7665

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.9e-10  Score=84.42  Aligned_cols=80  Identities=20%  Similarity=0.194  Sum_probs=66.8

Q ss_pred             ccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670          203 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG  282 (368)
Q Consensus       203 GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~  282 (368)
                      .|.|||.||.+.+|.+||.++|.+.+. --..+++ .....+++.|.|||.|.+.++|+.|+..||+.-+   +||||..
T Consensus         2 ~t~l~V~nLp~~~te~~l~~~f~~~G~-v~~v~i~-~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~---~g~~l~v   76 (82)
T d1fxla1           2 KTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLV-RDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL---QTKTIKV   76 (82)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHTTSC-EEEEEEE-ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHhCC-cccccce-eeccCCCceeeEEEEECCHHHHHHHHHHhCCCEE---CCEEEEE
Confidence            477999999999999999999998653 3345554 3344568889999999999999999999999877   9999998


Q ss_pred             ccCCC
Q 017670          283 SIGTP  287 (368)
Q Consensus       283 S~g~~  287 (368)
                      ..+.|
T Consensus        77 ~~AkP   81 (82)
T d1fxla1          77 SYARP   81 (82)
T ss_dssp             EECCC
T ss_pred             EEeeC
Confidence            87755

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=4.7e-10  Score=83.94  Aligned_cols=81  Identities=11%  Similarity=0.069  Sum_probs=65.8

Q ss_pred             ccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670          203 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG  282 (368)
Q Consensus       203 GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~  282 (368)
                      .+.|||.||.+.+|.+||+++|.+.+.. ..+++ .+......+.|.|||.|.+.++|+.||..||+..|   +||+|..
T Consensus         5 ~~kifV~nLp~~~t~~~l~~~F~~~G~i-~~~~~-~~~~~~~~~~g~afV~f~~~~~a~~Ai~~l~~~~~---~g~~l~V   79 (90)
T d1x5sa1           5 EGKLFVGGLSFDTNEQSLEQVFSKYGQI-SEVVV-VKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV---DGRQIRV   79 (90)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHHHSCC-CEEEE-CCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT---TSCCCEE
T ss_pred             CCEEEEECCCCcCCHHHHHHhhhccccc-cceee-ccccccccccceEEEEECCHHHHHHHHHHcCCCEE---CCEEEEE
Confidence            4459999999999999999999987653 33333 33345567789999999999999999999999877   9999997


Q ss_pred             ccCCCC
Q 017670          283 SIGTPC  288 (368)
Q Consensus       283 S~g~~~  288 (368)
                      ..+.+.
T Consensus        80 ~~a~~~   85 (90)
T d1x5sa1          80 DQAGKS   85 (90)
T ss_dssp             EEEECC
T ss_pred             EEcCCC
Confidence            765443

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.01  E-value=1.2e-10  Score=88.27  Aligned_cols=78  Identities=17%  Similarity=0.153  Sum_probs=62.1

Q ss_pred             cccEEEEecCCCCCCchHH---HHHHHHHhhccceecccCCcccC--CCCCceEEEEEechHHHHHHHHhhccceeeecC
Q 017670          202 HGTLVVLENLDPSYTSTVV---EDLVWHAFKENCSAKMIPRVAFA--SPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN  276 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dV---edLi~~a~ke~c~AkmI~~~~ys--~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~  276 (368)
                      +.++|||.||+|.+|.+||   .++|.+.+.. -.++++....+.  ..+.|.|||.|.+.++|..||..||+.-|   +
T Consensus         7 q~n~vyV~nLp~~~t~~~l~~~~e~F~~~G~I-~~v~i~~~~~~~~~~~~~g~aFV~f~~~~~A~~Ai~~lng~~~---~   82 (89)
T d2cpia1           7 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKI-HKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV---D   82 (89)
T ss_dssp             CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCE-EEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE---T
T ss_pred             ecCEEEEECCCCccCHHHHHHHHHHhcccCCc-eEEEEeeccCcCCCCCcceEEEEecccchhHHHHHHHhCCCEE---C
Confidence            5678999999999999999   5667765544 334444443332  35668999999999999999999999988   9


Q ss_pred             Cceeeec
Q 017670          277 GRPLLGS  283 (368)
Q Consensus       277 GRPL~~S  283 (368)
                      ||||-+|
T Consensus        83 gr~lkvS   89 (89)
T d2cpia1          83 GRTLKAS   89 (89)
T ss_dssp             TEEEEEE
T ss_pred             CEEEEEC
Confidence            9999886

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.98  E-value=5.6e-10  Score=83.70  Aligned_cols=81  Identities=14%  Similarity=0.124  Sum_probs=63.2

Q ss_pred             cccEEEEecCCCCCCchH-HHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          202 HGTLVVLENLDPSYTSTV-VEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~d-VedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      +|+.|||.||++.+|.+| |+++|.+.+.. -.++++.....+..+.|.|||.|.+.++|+.||. ||+.-|   +||+|
T Consensus         3 e~~~l~V~nLp~~~t~ed~l~~~F~~~G~i-~~v~i~~~~~~~~~~kg~afV~f~~~~~a~~Al~-~n~~~~---~gr~l   77 (86)
T d2ghpa3           3 EGREIMIRNLSTELLDENLLRESFEGFGSI-EKINIPAGQKEHSFNNCCAFMVFENKDSAERALQ-MNRSLL---GNREI   77 (86)
T ss_dssp             TTTEEEEEEECTTTCCHHHHHHHHGGGSCE-EEEECCSCCC---CCCEEEEEEESSHHHHHHHGG-GTTEEE---TTEEE
T ss_pred             CCCEEEEECCCCCcccHHHHHHHHHhhhhc-cceeeecccCCccccceeeeEEECCHHHHHHHHh-cCCCEE---CCEEE
Confidence            589999999999999765 99999887643 3334433334456788999999999999999995 998877   99999


Q ss_pred             eeccCCC
Q 017670          281 LGSIGTP  287 (368)
Q Consensus       281 ~~S~g~~  287 (368)
                      .-+.+.+
T Consensus        78 ~V~~a~~   84 (86)
T d2ghpa3          78 SVSLADK   84 (86)
T ss_dssp             EEEECCC
T ss_pred             EEEEcCC
Confidence            9877654

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=5.3e-10  Score=84.12  Aligned_cols=83  Identities=17%  Similarity=0.156  Sum_probs=68.3

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      ..+.|||.||.+.+|.+||.++|...+.. -..++ +....++.+-|.|||.|.+.++|+.||..||+..|   +||||.
T Consensus         4 ~~~tlfV~nLp~~~te~~l~~~F~~~G~i-~~v~i-~~d~~~~~~kg~afV~f~~~~~A~~ai~~l~~~~i---~g~~l~   78 (89)
T d2cqba1           4 TKRVLYVGGLAEEVDDKVLHAAFIPFGDI-TDIQI-PLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL---FGRTIR   78 (89)
T ss_dssp             CCSCEEEESCCSSCCHHHHHHHHTTTSCC-CCEEC-CCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE---TTEEEE
T ss_pred             CCcEEEEeCCCCcCCHHHHHHHHhhCCeE-Eeccc-ccccccccccceeEEEECCHHHHHHHHHHcCCCEE---CCEEEE
Confidence            45789999999999999999999886643 23333 34445578889999999999999999999999877   999999


Q ss_pred             eccCCCCC
Q 017670          282 GSIGTPCF  289 (368)
Q Consensus       282 ~S~g~~~~  289 (368)
                      ...+.|.-
T Consensus        79 v~~a~p~~   86 (89)
T d2cqba1          79 VNLAKPMR   86 (89)
T ss_dssp             EEECCCCC
T ss_pred             EEEeCCCC
Confidence            98886543

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=4.8e-10  Score=85.37  Aligned_cols=83  Identities=16%  Similarity=0.055  Sum_probs=67.8

Q ss_pred             HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      .+.++.|||.||.+..|.+||+++|.+.+.. -.++++. ....+.+-|.|||-|.+.++|..||..||+.-|   +|||
T Consensus         4 ~~~s~tlfV~nlp~~~te~~l~~~F~~~G~i-~~v~i~~-~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~---~gr~   78 (93)
T d1h2vz_           4 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDI-KKIIMGL-DKMKKTACGFCFVEYYSRADAENAMRYINGTRL---DDRI   78 (93)
T ss_dssp             TTTCCEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEEE-CTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEE---TTEE
T ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHCCc-ceecccc-ccccccccceEEEEECCHHHHHHHHHHhCCCEE---CCEE
Confidence            4678999999999999999999999887643 3344333 334467778999999999999999999999877   9999


Q ss_pred             eeeccCCC
Q 017670          280 LLGSIGTP  287 (368)
Q Consensus       280 L~~S~g~~  287 (368)
                      |....+..
T Consensus        79 i~V~~a~~   86 (93)
T d1h2vz_          79 IRTDWDAG   86 (93)
T ss_dssp             CEEEEESC
T ss_pred             EEEEEcCC
Confidence            99876543

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.96  E-value=2.5e-10  Score=84.79  Aligned_cols=78  Identities=15%  Similarity=0.141  Sum_probs=63.6

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      ..++|||.||+++.|.+||+++|.+.+.......+...  -+..+.|.|||.|.+.++|+.||.+||+.-|   +||||.
T Consensus         8 ~~~~l~v~nLp~~~~~~di~~~F~~~~~~~~~~~~~~~--~~g~~~G~afV~f~~~e~a~~Ai~~l~~~~l---~gr~i~   82 (86)
T d2cqpa1           8 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYN--EKGMPTGEAMVAFESRDEATAAVIDLNDRPI---GSRKVK   82 (86)
T ss_dssp             SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEEC--SSSCEEEEEEEEESCHHHHHHHHHHTTTCEE---TTEECE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHhhcccceeEEEEEeC--CCCCcceEEEEEEcCcHHHHHHHHHcCCCEE---CCEEEE
Confidence            46789999999999999999999886554433333322  2457789999999999999999999999988   999987


Q ss_pred             ecc
Q 017670          282 GSI  284 (368)
Q Consensus       282 ~S~  284 (368)
                      =+.
T Consensus        83 v~l   85 (86)
T d2cqpa1          83 LVL   85 (86)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.95  E-value=3.9e-10  Score=84.90  Aligned_cols=81  Identities=9%  Similarity=0.010  Sum_probs=65.5

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      +|+.|||.||.+.+|.+||.++|.+.+. -...+++. ..-++.+-|.|||.|.+.++|..||..||+..|   +||+|.
T Consensus         6 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~-i~~v~i~~-d~~tg~~~g~afV~f~~~~~A~~A~~~lng~~l---~g~~l~   80 (88)
T d1rk8a_           6 EGWILFVTSIHEEAQEDEIQEKFCDYGE-IKNIHLNL-DRRTGFSKGYALVEYETHKQALAAKEALNGAEI---MGQTIQ   80 (88)
T ss_dssp             -CEEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEE-CTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcCC-cccccccc-cccccccccceeEEECCHHHHHHHHHHcCCCEE---CCEEEE
Confidence            6899999999999999999999987654 33445443 233456778999999999999999999999877   999998


Q ss_pred             eccCCC
Q 017670          282 GSIGTP  287 (368)
Q Consensus       282 ~S~g~~  287 (368)
                      .+.+.+
T Consensus        81 V~~a~~   86 (88)
T d1rk8a_          81 VDWCFV   86 (88)
T ss_dssp             EEESEE
T ss_pred             EEEecC
Confidence            776543

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=98.95  E-value=3.9e-10  Score=84.01  Aligned_cols=78  Identities=18%  Similarity=0.223  Sum_probs=64.1

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCC--ce
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG--RP  279 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G--RP  279 (368)
                      .+|.|||.||.+.+|.+||+++|.+.+ .-..++++. ...+..+-|.|||.|.+.++|..||.+||+..+   +|  ||
T Consensus         5 ~~t~lfV~nlp~~~te~~l~~~F~~~G-~i~~~~~~~-d~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~~~   79 (85)
T d1b7fa2           5 KDTNLYVTNLPRTITDDQLDTIFGKYG-SIVQKNILR-DKLTGRPRGVAFVRYNKREEAQEAISALNNVIP---EGGSQP   79 (85)
T ss_dssp             TTCEEEEESCCTTCCHHHHHHHHTSSS-CEEEEEEEE-CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC---TTCSSC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhhC-CEeeeeeec-ccccccCceeEEEEECCHHHHHHHHHHHCCCEe---CCCCeE
Confidence            578899999999999999999998854 555666553 344567789999999999999999999999866   44  99


Q ss_pred             eeecc
Q 017670          280 LLGSI  284 (368)
Q Consensus       280 L~~S~  284 (368)
                      |....
T Consensus        80 l~V~~   84 (85)
T d1b7fa2          80 LSVRL   84 (85)
T ss_dssp             CEEEE
T ss_pred             EEEEE
Confidence            87543

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=5.3e-10  Score=83.68  Aligned_cols=80  Identities=16%  Similarity=0.177  Sum_probs=64.6

Q ss_pred             HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCC--
Q 017670          200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG--  277 (368)
Q Consensus       200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G--  277 (368)
                      -.++|.|||.||++.+|.+||+++|.+.+. -..++++. ...++.+-|.|||.|.+.++|+.||..||+..+   +|  
T Consensus         3 s~k~~~lfV~nLp~~~te~~L~~~F~~~G~-v~~v~i~~-d~~~g~~kg~afV~f~~~~~a~~Ai~~lng~~~---~G~~   77 (85)
T d1fxla2           3 SIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKP---SGAT   77 (85)
T ss_dssp             GGTTCEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEE-CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC---TTCS
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHhCC-cccccccc-ccccccCCCeeEEEEcCHHHHHHHHHHhCCCEe---CCCC
Confidence            356899999999999999999999977654 45565554 234467888999999999999999999999866   66  


Q ss_pred             ceeeecc
Q 017670          278 RPLLGSI  284 (368)
Q Consensus       278 RPL~~S~  284 (368)
                      +||..+.
T Consensus        78 ~~i~V~~   84 (85)
T d1fxla2          78 EPITVKF   84 (85)
T ss_dssp             SCCEEEE
T ss_pred             EEEEEEe
Confidence            6776543

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=1.1e-09  Score=83.57  Aligned_cols=83  Identities=16%  Similarity=0.151  Sum_probs=67.1

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhh-ccceeeecCCce
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKL-EEGCLLLSNGRP  279 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kl-n~~cL~ls~GRP  279 (368)
                      +..+.|||.||++.+|.+||+++|...+. -..++++....-+..+-|.|||.|.+.++|..||..| |+..|   +|||
T Consensus         6 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~-i~~v~i~~~~~~~g~~rg~afV~f~~~~~A~~Ai~~l~~~~~~---~Gr~   81 (94)
T d2cpha1           6 QTTSKILVRNIPFQANQREIRELFSTFGE-LKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL---YGRR   81 (94)
T ss_dssp             SCCCCEEEESCCTTCCHHHHHHHHHTTSC-EEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS---SSCB
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHhCC-ceEEEEEeccccCCCcccEEEEEECCHHHHHHHHHHccCCcEE---CCEE
Confidence            45678999999999999999999998664 3456666544445678899999999999999999999 45445   8999


Q ss_pred             eeeccCCC
Q 017670          280 LLGSIGTP  287 (368)
Q Consensus       280 L~~S~g~~  287 (368)
                      |....+..
T Consensus        82 l~V~~A~~   89 (94)
T d2cpha1          82 LVLEWADS   89 (94)
T ss_dssp             CEEEECCC
T ss_pred             EEEEEcCC
Confidence            98776643

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.92  E-value=2.1e-09  Score=81.95  Aligned_cols=83  Identities=18%  Similarity=0.074  Sum_probs=67.8

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      ..+.|||.||++..|.+||+++|...+.. -.++| +.......+.|.|||.|.+.++|+.||..||..-|   +||+|.
T Consensus         7 ~~~~lfV~nL~~~~t~~~l~~~F~~~g~v-~~v~i-~~d~~tg~~~g~afV~f~~~~~a~~A~~~l~g~~~---~gr~i~   81 (99)
T d1whwa_           7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPL-SELHY-PIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVF---QGRMLH   81 (99)
T ss_dssp             SCEEEEEECCCTTCCHHHHHHHHHTTSCE-EEEEC-CCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEES---SSCEEE
T ss_pred             CCCEEEEECCCCcCCHHHHHHHHHhcCCc-eeeee-cccccccccCcceEEEECCHHHHHHHHHHcCCCEE---CCEEEE
Confidence            45679999999999999999999775542 23433 34455578899999999999999999999999877   999999


Q ss_pred             eccCCCCC
Q 017670          282 GSIGTPCF  289 (368)
Q Consensus       282 ~S~g~~~~  289 (368)
                      ...+.+..
T Consensus        82 V~~a~~~~   89 (99)
T d1whwa_          82 VLPSTIKK   89 (99)
T ss_dssp             EEECCCCS
T ss_pred             EEECCCCC
Confidence            87776544

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3e-09  Score=81.35  Aligned_cols=75  Identities=17%  Similarity=0.216  Sum_probs=63.8

Q ss_pred             ccEEEEecCCCC-CCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          203 GTLVVLENLDPS-YTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       203 GtlV~LqNLDps-~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      .++|||.||+|. +|.+||.++|...| .-..++|+..      ..|.|||.|.+.++|..||..||...|   +||+|.
T Consensus         2 ~~~l~V~nL~p~~~te~~L~~~F~~fG-~I~~v~i~~~------~kg~afV~f~~~~~A~~ai~~lng~~l---~g~~l~   71 (109)
T d2adca1           2 NSVLLVSNLNPERVTPQSLFILFGVYG-DVQRVKILFN------KKENALVQMADGNQAQLAMSHLNGHKL---HGKPIR   71 (109)
T ss_dssp             CSEEEEESCCTTTCCHHHHHHHHHHHT-CEEEEEECCT------TSCCEEEEESCHHHHHHHHHHHTTCBC---SSSBCE
T ss_pred             CCEEEEeCCCcccCCHHHHHHHHhhcc-ccceEEEEec------ccceEEEEECCHHHHHHHHHHhCCCEE---CCEEEE
Confidence            689999999986 78899999999765 5556666542      258999999999999999999999988   999999


Q ss_pred             eccCCC
Q 017670          282 GSIGTP  287 (368)
Q Consensus       282 ~S~g~~  287 (368)
                      ...+..
T Consensus        72 v~~s~~   77 (109)
T d2adca1          72 ITLSKH   77 (109)
T ss_dssp             EECCSC
T ss_pred             EEECCC
Confidence            888743

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3.3e-09  Score=81.40  Aligned_cols=89  Identities=18%  Similarity=0.231  Sum_probs=76.2

Q ss_pred             cCCChHHHHHHHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhh
Q 017670          188 KELPWEERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKL  267 (368)
Q Consensus       188 K~lPWEe~lr~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kl  267 (368)
                      +.+++++.+..+-...+.|||.||.+.+|.+||.++|.+.|. --.+++++       +-|.|||-|.+.++|..||..|
T Consensus         3 ~~~~~~~~~~~~~~~~~~l~v~nL~~~~te~~L~~~F~~fG~-i~~v~i~~-------~kg~afV~f~~~~~A~~Ai~~l   74 (96)
T d1x4ga1           3 KQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQ-IMEIRVFP-------EKGYSFVRFSTHESAAHAIVSV   74 (96)
T ss_dssp             CSCCHHHHHHHSCSSCCEEEEECCSSCCCHHHHHHHHHHHSC-EEEEEEET-------TTTEEEEEESSHHHHHHHHHHH
T ss_pred             CcCCccccccCCCCCCCEEEEcCCCCCCCHHHHHHHHHHhCC-ceEEEEEe-------cceEEEEEECCHHHHHHHHHHh
Confidence            457889888888888899999999999999999999998665 34456653       3689999999999999999999


Q ss_pred             ccceeeecCCceeeeccCCC
Q 017670          268 EEGCLLLSNGRPLLGSIGTP  287 (368)
Q Consensus       268 n~~cL~ls~GRPL~~S~g~~  287 (368)
                      |+.-|   +||+|..+.+.+
T Consensus        75 ~~~~i---~g~~l~v~~ak~   91 (96)
T d1x4ga1          75 NGTTI---EGHVVKCYWGKE   91 (96)
T ss_dssp             TTCEE---TTEECEEECCCC
T ss_pred             CCCEE---CCEEEEEEEcCC
Confidence            99877   999999887743

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.2e-09  Score=84.64  Aligned_cols=78  Identities=14%  Similarity=0.066  Sum_probs=65.2

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      +.++.|||.||.+..|.+||+++|...+... .+++    ..+..+-|.|||.|.+.++|..||..||+..|   +||+|
T Consensus         5 ~~~r~l~V~nLp~~~te~~l~~~F~~~G~v~-~i~~----~~~~~~kG~afV~f~~~~~A~~Ai~~l~g~~~---~gr~l   76 (114)
T d2f9da1           5 EVNRILYIRNLPYKITAEEMYDIFGKYGPIR-QIRV----GNTPETRGTAYVVYEDIFDAKNACDHLSGFNV---CNRYL   76 (114)
T ss_dssp             TCCSEEEEESCCTTCCHHHHHHHHHTTSCEE-EEEE----ECSTTTTTEEEEEESSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHhhcCCeE-eecc----cccCCcCCeEEEEECCHHHHHHHHHHhCCCEE---CCEEE
Confidence            5689999999999999999999999877632 2222    23456679999999999999999999999988   99999


Q ss_pred             eeccCC
Q 017670          281 LGSIGT  286 (368)
Q Consensus       281 ~~S~g~  286 (368)
                      ....+.
T Consensus        77 ~V~~a~   82 (114)
T d2f9da1          77 VVLYYN   82 (114)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            976653

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=9.6e-10  Score=86.01  Aligned_cols=83  Identities=13%  Similarity=0.073  Sum_probs=67.9

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ++.+.|||.||.+.+|.+||+++|.+.+... .+ .|+.......+-|.|||.|.++++|+.||. +++..|   +||+|
T Consensus        18 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~-~i~~d~~~~~~kg~aFV~f~~~~~a~~al~-~~~~~l---~G~~i   91 (103)
T d1x4ba1          18 EQFRKLFIGGLSFETTEESLRNYYEQWGKLT-DC-VVMRDPASKRSRGFGFVTFSSMAEVDAAMA-ARPHSI---DGRVV   91 (103)
T ss_dssp             HHHTEEEEECCTTCCCHHHHHHHHTSSCCCS-EE-EEECCTTTSSCCSEEEEECSSHHHHHHHHT-SCSEEE---TTEEE
T ss_pred             CCCCEEEEeCCCCcCCHHHHHHHHHhhCccc-ce-eecccccCCCccCeEEEEECCHHHHHHHHH-hCCCeE---CCEEE
Confidence            4568899999999999999999999865432 33 455556667889999999999999999995 677766   99999


Q ss_pred             eeccCCCCC
Q 017670          281 LGSIGTPCF  289 (368)
Q Consensus       281 ~~S~g~~~~  289 (368)
                      ...++.|..
T Consensus        92 ~V~~a~~ke  100 (103)
T d1x4ba1          92 EPKRAVARE  100 (103)
T ss_dssp             EEECCSSCC
T ss_pred             EEEECcccC
Confidence            988776543

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=3.2e-09  Score=79.89  Aligned_cols=81  Identities=17%  Similarity=0.106  Sum_probs=65.7

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      ..+.|||.||.+.+|.+||.++|.+.+... .++++...   ..+.|.|||.|.+.++|..||..||+..|   +||||.
T Consensus         7 ~~~tl~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~d~---~~~~~~afV~f~~~~~A~~A~~~l~~~~~---~g~~i~   79 (90)
T d2cqia1           7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCK-SCKMITEH---TSNDPYCFVEFYEHRDAAAALAAMNGRKI---LGKEVK   79 (90)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHHHHSCEE-EEEEECCC---CSSCCEEEEEESSHHHHHHHHHHHTTEEE---TTEEEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcCCce-eeeeeccc---CccceeeEEEECCHHHHHHHHHHcCCCEE---CCEEEE
Confidence            357899999999999999999999977643 33444321   12368899999999999999999999877   999999


Q ss_pred             eccCCCCC
Q 017670          282 GSIGTPCF  289 (368)
Q Consensus       282 ~S~g~~~~  289 (368)
                      ...+.+..
T Consensus        80 v~~a~~~~   87 (90)
T d2cqia1          80 VNWATTPS   87 (90)
T ss_dssp             EEECCCTT
T ss_pred             EEEcCCCC
Confidence            88876543

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.89  E-value=1.6e-09  Score=77.94  Aligned_cols=74  Identities=16%  Similarity=0.120  Sum_probs=59.9

Q ss_pred             EEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeecc
Q 017670          205 LVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSI  284 (368)
Q Consensus       205 lV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S~  284 (368)
                      .|||.||++..|.+||.++|.+.+... .+.++ ....++.+.|.|||.|.+.++|+.|+. +|+.-|   +||||...+
T Consensus         1 rlfV~nLp~~~te~~l~~~F~~~G~i~-~~~~~-~~~~~~~~~~~afV~F~~~~~a~~al~-~~~~~l---~gr~i~V~~   74 (75)
T d2msta_           1 KIFVGGLSVNTTVEDVKHYFEQFGKVD-DAMLM-FDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEI---NNKMVECKK   74 (75)
T ss_dssp             CEEEECCCSSCCHHHHHHHHHTTSCCS-EECCB-CCTTCTTSCCEEEEECSCHHHHHHHHH-CSSCCB---TTBCCEEEE
T ss_pred             CEEEeCCCCCCCHHHHHHHHHHhCCcc-eeeee-eeccccccCceeEEEECCHHHHHHHHh-cCCCEE---CCeEEEEEE
Confidence            389999999999999999999876643 23332 233446788999999999999999995 998877   999997643

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=6.1e-10  Score=83.93  Aligned_cols=80  Identities=15%  Similarity=0.077  Sum_probs=66.0

Q ss_pred             ccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670          203 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG  282 (368)
Q Consensus       203 GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~  282 (368)
                      .+.|||.||++.+|.+||.++|.+.+.. ..++++. ...++.+-|.|||.|.+.++|+.||..||+..+   +||+|..
T Consensus         8 ~~~i~V~nLp~~~t~~~l~~~f~~~G~v-~~v~i~~-d~~t~~~rg~afV~f~~~~~A~~Ai~~l~g~~~---~g~~i~v   82 (90)
T d2cq0a1           8 NATIRVTNLSEDTRETDLQELFRPFGSI-SRIYLAK-DKTTGQSKGFAFISFHRREDAARAIAGVSGFGY---DHLILNV   82 (90)
T ss_dssp             SEEEEEESCCTTCCHHHHHTTSTTTCCE-EEEEEEE-CSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEE---TTEECEE
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHhccc-ccccccc-cccccccccceeEEECCHHHHHHHHHHhCCCEE---CCEEEEE
Confidence            4579999999999999999999886654 3454443 333567788999999999999999999998877   9999998


Q ss_pred             ccCCC
Q 017670          283 SIGTP  287 (368)
Q Consensus       283 S~g~~  287 (368)
                      +.+.|
T Consensus        83 ~~akp   87 (90)
T d2cq0a1          83 EWAKP   87 (90)
T ss_dssp             EESSC
T ss_pred             EeeeC
Confidence            87654

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=9.8e-10  Score=81.27  Aligned_cols=75  Identities=13%  Similarity=0.054  Sum_probs=61.2

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      .++.|||.||.+..|.+||+++|.+.+... .++++ .......+-|.|||.|.+.++|+.||..||+..|   +||+|.
T Consensus         8 ~~~~l~V~nL~~~~te~~l~~~F~~~G~i~-~v~i~-~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~gr~i~   82 (83)
T d2cqca1           8 PNCCLGVFGLSLYTTERDLREVFSKYGPIA-DVSIV-YDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL---DGRRIR   82 (83)
T ss_dssp             GGGCEEEESCCSSCCHHHHHHHHHTTSCEE-EEEEE-ECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE---TTEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCCc-ccccc-ccccccccccceEEEECCHHHHHHHHHHcCCCEE---CCEEeE
Confidence            357899999999999999999999877643 23333 2233356778999999999999999999999988   999984

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.8e-09  Score=83.30  Aligned_cols=83  Identities=11%  Similarity=0.022  Sum_probs=66.8

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      .|+.|||.||.+.+|.+||.++|...+. -..++++- ..-..++-|.|||.|.+.++|..||..||+.-|   +||+|.
T Consensus        17 ~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~~~~~~-~~~~g~~kG~afV~f~~~~~A~~Ai~~lng~~~---~g~~i~   91 (102)
T d2cpza1          17 EGANLFIYHLPQEFGDQDLLQMFMPFGN-VVSAKVFI-DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI---GMKRLK   91 (102)
T ss_dssp             TTCCEEEESCCSSCCHHHHHHHHGGGSC-CSEEEEEE-CSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE---TTEECE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhhcc-ccccceee-ecccCCCccceEEEeCCHHHHHHHHHHhCCCEE---CCEEEE
Confidence            3678999999999999999999988654 33444442 222356678999999999999999999999877   999999


Q ss_pred             eccCCCCC
Q 017670          282 GSIGTPCF  289 (368)
Q Consensus       282 ~S~g~~~~  289 (368)
                      ...+.+..
T Consensus        92 V~~a~~k~   99 (102)
T d2cpza1          92 VQLKRSKN   99 (102)
T ss_dssp             EECCCCSC
T ss_pred             EEEeCCCC
Confidence            88776554

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.87  E-value=2.4e-09  Score=81.92  Aligned_cols=74  Identities=12%  Similarity=-0.003  Sum_probs=62.3

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      .+|.|||.||.+.+|.+||+++|...+.. ...+|       .+.-|.|||.|.+.++|..||..||+.-|   +||||.
T Consensus         9 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~I-~~v~l-------~~~kg~afV~f~~~~~A~~A~~~lng~~~---~gr~l~   77 (111)
T d1whxa_           9 SKTVILAKNLPAGTLAAEIQETFSRFGSL-GRVLL-------PEGGITAIVEFLEPLEARKAFRHLAYSKF---HHVPLY   77 (111)
T ss_dssp             EEEEEEEESCCTTCCHHHHHHHHHTTSCE-EEEEC-------CSSSSCEEEEESCHHHHHHHHHHHTTCBS---SSSBCE
T ss_pred             CCCEEEEECCCCCCCHHHHHhhhhccCCc-cEEEe-------eccCceEEEEEcCHHHHHHHHHHHcCCcc---CCCeEE
Confidence            56899999999999999999999876654 33433       23458999999999999999999999987   899999


Q ss_pred             eccCC
Q 017670          282 GSIGT  286 (368)
Q Consensus       282 ~S~g~  286 (368)
                      ...+.
T Consensus        78 v~~a~   82 (111)
T d1whxa_          78 LEWAP   82 (111)
T ss_dssp             EEEEE
T ss_pred             EEECC
Confidence            77653

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.87  E-value=3.1e-09  Score=79.64  Aligned_cols=85  Identities=16%  Similarity=0.147  Sum_probs=66.2

Q ss_pred             HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhcc-----ceeee
Q 017670          200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEE-----GCLLL  274 (368)
Q Consensus       200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~-----~cL~l  274 (368)
                      .++|+.|||.||.+..|.+||.++|.+.+.. ...+++ .......+.|.|||.|.+.++|..||..||.     +..  
T Consensus         5 ~~~~~tlfV~nLp~~~te~~l~~~f~~~G~v-~~~~~~-~~~~~~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~--   80 (98)
T d1x4ha1           5 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDL-KYVRVV-LHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK--   80 (98)
T ss_dssp             CCCCCCEEEESCCTTCCHHHHHHHHHTTSCE-EEEECC-BCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE--
T ss_pred             CCCCCEEEEcCCCCcCCHHHHHHHHhccccc-eeeeec-cccccccccceEEEEEcCHHHHHHHHHHcccccccCCcE--
Confidence            3578999999999999999999999987653 233333 2333457789999999999999999999984     332  


Q ss_pred             cCCceeeeccCCCC
Q 017670          275 SNGRPLLGSIGTPC  288 (368)
Q Consensus       275 s~GRPL~~S~g~~~  288 (368)
                      -+||+|....+.+.
T Consensus        81 ~~gr~l~v~~a~~k   94 (98)
T d1x4ha1          81 LDGRQLKVDLAVTR   94 (98)
T ss_dssp             SSSCEEEEECCCCC
T ss_pred             ECCEEEEEEECCCC
Confidence            38999998776553

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=1.4e-09  Score=80.24  Aligned_cols=76  Identities=16%  Similarity=0.184  Sum_probs=64.0

Q ss_pred             EEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeecc
Q 017670          205 LVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSI  284 (368)
Q Consensus       205 lV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S~  284 (368)
                      -||+.||++.+|.+||.++|.+.+ +-..++++. ...+..+.|.|||-|.+.++|..||..||+.-|   +||||..+.
T Consensus         2 slfV~nL~~~~te~~l~~~F~~~G-~i~~v~i~~-d~~tg~~~g~aFV~f~~~~~a~~ai~~l~g~~~---~gr~i~v~~   76 (80)
T d1cvja1           2 SLYVGDLHPDVTEAMLYEKFSPAG-PILSIRVCR-DMITRRSLGYAYVNFQQPADAERALDTMNFDVI---KGKPVRIMW   76 (80)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEE-CTTTCCEEEEEEEEESSHHHHHHHHTTSTTCEE---TTEECEEEE
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHhC-CEeEEEEEe-cccccCCCCceEEEECCHHHHHHHHHHcCCCEE---CCEEEEEEE
Confidence            489999999999999999997654 556666664 334467889999999999999999999999877   999998664


Q ss_pred             C
Q 017670          285 G  285 (368)
Q Consensus       285 g  285 (368)
                      +
T Consensus        77 a   77 (80)
T d1cvja1          77 S   77 (80)
T ss_dssp             C
T ss_pred             e
Confidence            3

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=98.86  E-value=9.1e-10  Score=83.83  Aligned_cols=78  Identities=15%  Similarity=0.147  Sum_probs=63.9

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      +.++.|||.||++.+|.+||.++|.+.+...       .+..+.++-|.|||.|.+.++|+.||..||+..|   +||||
T Consensus        14 ~~~~~l~V~nL~~~~te~~l~~~F~~~g~v~-------~~~~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~---~gr~i   83 (96)
T d1fjca_          14 RAARTLLAKNLSFNITEDELKEVFEDALEIR-------LVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI---DGRSV   83 (96)
T ss_dssp             TGGGEEEEESCCSSCCHHHHHHHHCSEEEEC-------CEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEE---TTEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcccce-------eeeecCccccEEEEEeCCHHHHHHHHHHcCCCEE---CCEEE
Confidence            4567899999999999999999997765432       1223457789999999999999999999999877   99999


Q ss_pred             eeccCCCC
Q 017670          281 LGSIGTPC  288 (368)
Q Consensus       281 ~~S~g~~~  288 (368)
                      ....+.+.
T Consensus        84 ~V~~a~~k   91 (96)
T d1fjca_          84 SLYYTGEK   91 (96)
T ss_dssp             EEEECSSS
T ss_pred             EEEEeCCC
Confidence            97765543

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=3.2e-09  Score=80.71  Aligned_cols=81  Identities=20%  Similarity=0.268  Sum_probs=66.6

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      ..+.|||.||.+.+|.+||+++|...+.. -.+++ .....+..+-|.|||.|.+.++|+.||..||..-|   +||+|.
T Consensus         8 ~~~tlfV~nLp~~~t~~~l~~~F~~~G~v-~~v~~-~~d~~tg~~kg~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~   82 (93)
T d1x5ua1           8 QDATVYVGGLDEKVSEPLLWELFLQAGPV-VNTHM-PKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKL---YGKPIR   82 (93)
T ss_dssp             TTTEEEEECCCTTCCHHHHHHHHHTTSCE-EEEEC-CBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBC---SSCBCE
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHHhCCc-cccce-eecccccccccceEEEECCHHHHHHHHHHcCCCEE---CCEEEE
Confidence            35789999999999999999999887753 23333 33445567889999999999999999999999877   999999


Q ss_pred             eccCCC
Q 017670          282 GSIGTP  287 (368)
Q Consensus       282 ~S~g~~  287 (368)
                      ...+.+
T Consensus        83 V~~A~~   88 (93)
T d1x5ua1          83 VNKASA   88 (93)
T ss_dssp             EEETTT
T ss_pred             EEEcCC
Confidence            877654

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=2.1e-09  Score=81.57  Aligned_cols=81  Identities=20%  Similarity=0.226  Sum_probs=66.3

Q ss_pred             ccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670          203 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG  282 (368)
Q Consensus       203 GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~  282 (368)
                      .+.|||.||.+.+|.+||.++|.+.+...- .+++. ...+..+.|.|||.|.+.++|+.||..||+.-|   +||||..
T Consensus        18 s~tl~V~nLp~~~t~~~l~~~f~~~G~v~~-~~~~~-~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~g~~~---~g~~l~V   92 (102)
T d2cpxa1          18 NKVLYLKNLSPRVTERDLVSLFARFQEKKG-PPIQF-RMMTGRMRGQAFITFPNKEIAWQALHLVNGYKL---YGKILVI   92 (102)
T ss_dssp             CSEEEEECCCTTCCHHHHHHHTHHHHHSSS-SCCEE-EEECSSSCSEEEEECSSHHHHHHHHHHSTTCBC---SSCBCEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHhhccceee-EEeec-ccccccccccceEEeccHHHHHHHHHHhCCCEE---CCEEEEE
Confidence            578999999999999999999999775532 22222 223457889999999999999999999999766   9999998


Q ss_pred             ccCCCC
Q 017670          283 SIGTPC  288 (368)
Q Consensus       283 S~g~~~  288 (368)
                      +.+.+.
T Consensus        93 ~~ak~k   98 (102)
T d2cpxa1          93 EFGKNK   98 (102)
T ss_dssp             EECCCC
T ss_pred             EeCCCc
Confidence            888653

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=2.6e-09  Score=80.22  Aligned_cols=78  Identities=24%  Similarity=0.192  Sum_probs=63.9

Q ss_pred             ccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670          203 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG  282 (368)
Q Consensus       203 GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~  282 (368)
                      .+-|||.||++.+|.+||+++|.+.+.. ..++++...   +.+-|.|||.|.+.++|+.||..||+.-|   +||+|..
T Consensus         8 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v-~~~~i~~~~---~~~kg~afV~f~~~~~A~~Ai~~l~g~~~---~g~~i~V   80 (89)
T d1cvja2           8 VGNIFIKNLDKSIDNKALYDTFSAFGNI-LSCKVVCDE---NGSKGYGFVHFETQEAAERAIEKMNGMLL---NDRKVFV   80 (89)
T ss_dssp             TTEEEEESCCSSCCHHHHHHHHHTTSCE-EEEEECCBT---TBCCSCEEEEESCHHHHHHHTTSSSEEEE---TTEEEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCc-eEEEEEeec---CCCcceeEEEECCHHHHHHHHHHcCCCEE---CCEEEEE
Confidence            3458999999999999999999887653 445555432   33568999999999999999999999877   9999998


Q ss_pred             ccCCC
Q 017670          283 SIGTP  287 (368)
Q Consensus       283 S~g~~  287 (368)
                      +.+.+
T Consensus        81 ~~a~~   85 (89)
T d1cvja2          81 GRFKS   85 (89)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            77654

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=4.6e-09  Score=79.70  Aligned_cols=79  Identities=16%  Similarity=0.077  Sum_probs=63.6

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ..++.|||.||++.+|.+||.++|.+.+.... .++    ..+..+.|.|||.|.+.++|+.||..||..-|   +||+|
T Consensus        12 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~----~~~~~~~g~afV~f~~~e~a~~Ai~~l~g~~~---~g~~l   83 (95)
T d1x4aa1          12 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRD-IDL----KNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDY---DGYRL   83 (95)
T ss_dssp             CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEE-EEE----CCSSSSSCCEEEEESCHHHHHHHHHHHTTCEE---TTEEC
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHhcCCceEE-EEe----cccccccceEEEEECCHHHHHHHHHHhCCCEE---CCEEE
Confidence            44678999999999999999999988665432 222    22234568999999999999999999999877   99999


Q ss_pred             eeccCCC
Q 017670          281 LGSIGTP  287 (368)
Q Consensus       281 ~~S~g~~  287 (368)
                      ....+..
T Consensus        84 ~V~~a~~   90 (95)
T d1x4aa1          84 RVEFPRS   90 (95)
T ss_dssp             EEECCCC
T ss_pred             EEEeccC
Confidence            9877543

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.2e-09  Score=84.13  Aligned_cols=75  Identities=15%  Similarity=0.169  Sum_probs=62.2

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      ..|.|||.||++.+|.+||.++|.+.+.... ++++..  ....+.|.|||-|.+.++|+.||..||+.-|   .||||.
T Consensus        17 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~-~~~~~~--~~~~~~g~afV~f~~~~~A~~Ai~~lng~~i---~gr~~~   90 (101)
T d1x5oa1          17 DPTNLYISNLPLSMDEQELENMLKPFGQVIS-TRILRD--SSGTSRGVGFARMESTEKCEAVIGHFNGKFI---KTPPGV   90 (101)
T ss_dssp             CTTEEEEESCCTTCCHHHHHHTTTTTSCEEE-EEEEEC--SSSCEEEEEEEEESCHHHHHHHHHHHBTCCC---CCCTTS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhhcccccc-eeeecc--cccccccceeEEeCCHHHHHHHHHHhCCCEE---CCcCCc
Confidence            4578999999999999999999988776532 333332  2457789999999999999999999999977   999987


Q ss_pred             e
Q 017670          282 G  282 (368)
Q Consensus       282 ~  282 (368)
                      .
T Consensus        91 v   91 (101)
T d1x5oa1          91 S   91 (101)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.7e-09  Score=78.84  Aligned_cols=76  Identities=12%  Similarity=0.093  Sum_probs=60.3

Q ss_pred             cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeec
Q 017670          204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS  283 (368)
Q Consensus       204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S  283 (368)
                      +.|||.||+++.|.+||+++|.+.+.... ++++ ...-...+.|.|||.|.+.++|+.|+. +|+.-|   +||+|.-.
T Consensus         3 r~lfV~nLp~~~te~~l~~~F~~~G~i~~-~~~~-~~~~~~~~~g~afV~f~~~e~~~~al~-~~~~~l---~Gr~i~V~   76 (79)
T d1l3ka2           3 KKIFVGGIKEDTEEHHLRDYFEQYGKIEV-IEIM-TDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTV---NGHNCEVR   76 (79)
T ss_dssp             SEEEEECCTTTCCHHHHHHHHTTTSCEEE-EEEE-ECTTTCCEEEEEEEEESSHHHHHHHHH-CSCCEE---TTEECEEE
T ss_pred             CEEEECCCCCcCCHHHHHHHHHHhccccc-cccc-cCCCCcccccEEEEEEcCHHHHHHHHH-hCCCEE---CCEEEEEE
Confidence            68999999999999999999998765543 3333 233345778999999999999999995 777766   99999765


Q ss_pred             cC
Q 017670          284 IG  285 (368)
Q Consensus       284 ~g  285 (368)
                      ++
T Consensus        77 ~A   78 (79)
T d1l3ka2          77 KA   78 (79)
T ss_dssp             EC
T ss_pred             EC
Confidence            44

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=3.5e-09  Score=80.33  Aligned_cols=81  Identities=16%  Similarity=0.114  Sum_probs=66.3

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      ...+.|||.||.+.+|.+||.++|.+.+... .++++...   +.+.|.|||.|.+.++|+.||..||+.-|   +||+|
T Consensus         9 ~~~~~l~v~nLp~~~t~~~L~~~F~~~G~v~-~v~~~~~~---~~~kg~afV~f~~~~~a~~Ai~~l~~~~~---~g~~l   81 (93)
T d2cq3a1           9 STPKRLHVSNIPFRFRDPDLRQMFGQFGKIL-DVEIIFNE---RGSKGFGFVTFENSADADRAREKLHGTVV---EGRKI   81 (93)
T ss_dssp             CCCCEEEEESCCTTCCHHHHHHHGGGTSCEE-EEEEECCT---TTTCCEEEEEESCHHHHHHHHHHHTTCEE---TTEEC
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHhhcceee-eccccccc---cCCcceeEEEECCHHHHHHHHHHcCCCEE---CCEEE
Confidence            3567899999999999999999998887543 33444332   23579999999999999999999999877   99999


Q ss_pred             eeccCCCC
Q 017670          281 LGSIGTPC  288 (368)
Q Consensus       281 ~~S~g~~~  288 (368)
                      ....+.+.
T Consensus        82 ~V~~A~~r   89 (93)
T d2cq3a1          82 EVNNATAR   89 (93)
T ss_dssp             EEEECCSS
T ss_pred             EEEecCcC
Confidence            98877654

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=3.8e-09  Score=78.52  Aligned_cols=76  Identities=20%  Similarity=0.211  Sum_probs=63.5

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhc-cceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKE-NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke-~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      .+-+.|||.||.+.+|.+||.++|...+.. .+..         ..+.|.|||-|.+.++|..||..||+.-|   +||+
T Consensus         6 ~~~k~l~V~nLp~~~te~~l~~~F~~~g~i~~~~~---------~~~rg~afV~f~~~~~A~~Ai~~l~~~~i---~g~~   73 (86)
T d2cpda1           6 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV---------KKIRDYAFVHFSNREDAVEAMKALNGKVL---DGSP   73 (86)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEE---------EECSSEEEEEESSHHHHHHHHHHHSSEEE---TTEE
T ss_pred             cCCCEEEEcCCCCCCCHHHHHHhhcccceeeeEEE---------ccccEEEEEEeCCHHHHHHHHHHcCCCEE---CCEE
Confidence            345789999999999999999999876542 2222         45679999999999999999999998876   9999


Q ss_pred             eeeccCCCC
Q 017670          280 LLGSIGTPC  288 (368)
Q Consensus       280 L~~S~g~~~  288 (368)
                      |..+.+.|.
T Consensus        74 i~V~~akP~   82 (86)
T d2cpda1          74 IEVTLAKPV   82 (86)
T ss_dssp             EEEECCCCC
T ss_pred             EEEEeccCC
Confidence            999887643

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=6.2e-09  Score=80.42  Aligned_cols=79  Identities=16%  Similarity=0.046  Sum_probs=63.7

Q ss_pred             ccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670          203 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG  282 (368)
Q Consensus       203 GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~  282 (368)
                      .|.|||.||++.+|.+||.++|.+.+. --.++++. ...+..+-|.|||.|.+.++|+.||..+| +-|   +||+|..
T Consensus        10 ~~~lfV~nLp~~~te~~l~~~F~~~G~-i~~v~i~~-d~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l---~Gr~l~V   83 (103)
T d2cqda1          10 FTKIFVGGLPYHTTDASLRKYFEGFGD-IEEAVVIT-DRQTGKSRGYGFVTMADRAAAERACKDPN-PII---DGRKANV   83 (103)
T ss_dssp             SSEEEEECCCSSCCHHHHHHHHHTTSC-EEEEEESC-CSSSCCCCSEEEEEESSHHHHHHHHTCSS-CEE---TTEECEE
T ss_pred             CcEEEEeCCCCcCcHHHHHHHHhhccc-ccceeccc-cccccccCCeEEEEECCHHHHHHHHHHCC-CcC---CCEEEEE
Confidence            467999999999999999999987664 33444433 34456788999999999999999999887 445   8999998


Q ss_pred             ccCCC
Q 017670          283 SIGTP  287 (368)
Q Consensus       283 S~g~~  287 (368)
                      ..+..
T Consensus        84 ~~a~~   88 (103)
T d2cqda1          84 NLAYL   88 (103)
T ss_dssp             EESTT
T ss_pred             EEcCC
Confidence            77654

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.83  E-value=2.4e-09  Score=78.89  Aligned_cols=68  Identities=24%  Similarity=0.318  Sum_probs=58.6

Q ss_pred             EEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeeccC
Q 017670          206 VVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSIG  285 (368)
Q Consensus       206 V~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S~g  285 (368)
                      |||+||.+.+|.+||+++|.+.+-.         ..+.+++.|.|||.|.+.+.|..|+..||+.-+   +||||..+.+
T Consensus         1 i~V~nLp~~~t~~~l~~~F~~~g~~---------~~~~~~~~g~afv~f~~~~~A~~Ai~~ln~~~~---~g~~l~V~~a   68 (75)
T d1wi6a1           1 ILIRGLPGDVTNQEVHDLLSDYELK---------YCFVDKYKGTAFVTLLNGEQAEAAINTFHQSRL---RERELSVQLQ   68 (75)
T ss_dssp             EEEECCCTTCCHHHHHHHTTTSCEE---------EEEEETTTTEEEEEESSHHHHHHHHHHHTTEES---SSCEEEEEEC
T ss_pred             CEEeCCCCcCCHHHHHHHHhccccc---------ceeecccceeEEEEECCHHHHHHHHHHhCCccC---CCCEEEEEEe
Confidence            7999999999999999999876511         122367889999999999999999999999877   9999998766

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.7e-09  Score=81.02  Aligned_cols=80  Identities=10%  Similarity=0.065  Sum_probs=63.8

Q ss_pred             cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccC---CCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFA---SPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys---~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      |.|||.||.+.+|.+||.++|...+...+..-+.....++   ..+-|.|||-|.+.++|+.|+ .||+.-|   +||+|
T Consensus         2 RrlyVgNLp~~~te~~l~~~F~~~g~~~~~~~~~~~~~~~~~~~~~kg~afV~f~~~e~a~~a~-~l~g~~~---~Gr~l   77 (90)
T d1u2fa_           2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIF---QGQSL   77 (90)
T ss_dssp             CEEEECSCCTTCCTTHHHHHHHHHHTTTTSCCSSSCSEEECCEETTTTEEEEEESSCTTTTTGG-GGSSCCS---SSSCC
T ss_pred             CEEEEcCCCCccchHHHHHHHHhhCcEEEEEEeccceeeecccCCCceEEEEEeCCHHHHHHHH-hhCCcEE---CCEEE
Confidence            6799999999999999999999988765444332222222   267789999999999999998 5999888   99999


Q ss_pred             eeccCCC
Q 017670          281 LGSIGTP  287 (368)
Q Consensus       281 ~~S~g~~  287 (368)
                      .-++..-
T Consensus        78 ~V~r~k~   84 (90)
T d1u2fa_          78 KIRRPHD   84 (90)
T ss_dssp             CCBCTTC
T ss_pred             EECCCCC
Confidence            9776443

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=3.4e-09  Score=79.25  Aligned_cols=78  Identities=19%  Similarity=0.085  Sum_probs=62.1

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      -.++|||.||++.+|.+||.++|..-+. -...+++       ++.|.|||-|.+.++|+.|+..++..-+++ +||||.
T Consensus         7 Ps~~l~V~nLp~~~t~~~L~~~f~~~G~-i~~v~~~-------~~~~~afV~f~~~e~A~~a~~~~~~~~~~~-~g~~l~   77 (88)
T d2cq1a1           7 PSRVLHIRKLPGEVTETEVIALGLPFGK-VTNILML-------KGKNQAFLELATEEAAITMVNYYSAVTPHL-RNQPIY   77 (88)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHTTTTTSC-EEEEEEE-------TTTTEEEEEESSHHHHHHHHHHHHHSCCEE-TTEECE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhcccc-ccccccc-------ccceEEEEEeCCHHHHHHHHHHHccCCCcc-CCCEEE
Confidence            4689999999999999999999977543 3344444       345889999999999999999887544444 999999


Q ss_pred             eccCCCC
Q 017670          282 GSIGTPC  288 (368)
Q Consensus       282 ~S~g~~~  288 (368)
                      .+++...
T Consensus        78 v~~sk~~   84 (88)
T d2cq1a1          78 IQYSNHK   84 (88)
T ss_dssp             EEECSCS
T ss_pred             EEECCCC
Confidence            8776543

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.80  E-value=4e-09  Score=77.68  Aligned_cols=74  Identities=18%  Similarity=0.112  Sum_probs=61.0

Q ss_pred             cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeec
Q 017670          204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS  283 (368)
Q Consensus       204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S  283 (368)
                      |.|||.||+++.|.+||+++|++.+... .++|++..   +.+.|.|||-|.+.++|..||. +|+.-|   +||||.-+
T Consensus         1 Ttv~V~nlp~~~t~~~l~~~F~~~G~I~-~v~~~~~~---~~~~~~afV~F~~~~~a~~Al~-~~~~~i---~g~~i~V~   72 (75)
T d2ghpa2           1 TTVLVKNLPKSYNQNKVYKYFKHCGPII-HVDVADSL---KKNFRFARIEFARYDGALAAIT-KTHKVV---GQNEIIVS   72 (75)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHGGGSCEE-EEEEEECT---TSSSEEEEEEESSHHHHHHHHT-TTTCEE---TTEECEEE
T ss_pred             CEEEEECCCCCCCHHHHHHHHhcCCceE-EEEEEeec---cccceEEEEEEcchHHhHHHHH-hcCcEE---CCEEEEEE
Confidence            6799999999999999999999977664 45555432   3457899999999999999995 788866   99999865


Q ss_pred             cC
Q 017670          284 IG  285 (368)
Q Consensus       284 ~g  285 (368)
                      +.
T Consensus        73 ~~   74 (75)
T d2ghpa2          73 HL   74 (75)
T ss_dssp             EC
T ss_pred             EC
Confidence            43

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=3e-09  Score=79.80  Aligned_cols=71  Identities=23%  Similarity=0.167  Sum_probs=59.8

Q ss_pred             EEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeecc
Q 017670          205 LVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSI  284 (368)
Q Consensus       205 lV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S~  284 (368)
                      .|||.||.+++|.+||+++|.+.+. -+.++++.        -|.|||.|.+.++|+.||.+||+.-|   +||+|....
T Consensus         2 rvfV~nlp~~~~~~~l~~~F~~~G~-v~~~~i~~--------~g~afV~f~~~~~a~~Ai~~l~g~~~---~g~~i~v~~   69 (87)
T d3begb1           2 RVVVSGLPPSGSWQDLKDHMREAGD-VCYADVYR--------DGTGVVEFVRKEDMTYAVRKLDNTKF---RSHEGETAY   69 (87)
T ss_dssp             CEEEEECCSSCCTTHHHHHHGGGSC-EEEEEECT--------TSEEEEEESSHHHHHHHHHHHTTCBC---CCTTSCCCB
T ss_pred             eEEEECCCCcCCHHHHHHHHhhhcc-cccccccc--------cceeeEEeCCHHHHHHHHHHhCCCEE---CCcEeEEeE
Confidence            3899999999999999999987764 45555432        28999999999999999999999988   999987665


Q ss_pred             CCC
Q 017670          285 GTP  287 (368)
Q Consensus       285 g~~  287 (368)
                      ..+
T Consensus        70 ~~~   72 (87)
T d3begb1          70 IRV   72 (87)
T ss_dssp             CEE
T ss_pred             Eec
Confidence            543

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.2e-09  Score=78.71  Aligned_cols=70  Identities=23%  Similarity=0.182  Sum_probs=58.7

Q ss_pred             EEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          206 VVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       206 V~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      |||.||.+..|.+||.++|...+... ..+++. ......+.|.|||-|.+.++|+.||..||+.-+   +||+|
T Consensus         1 lyV~nLp~~~te~~l~~~F~~~G~v~-~~~~~~-~~~~~~~~g~afV~f~~~~~A~~Ai~~lng~~~---~Gr~~   70 (72)
T d1x4ea1           1 LYIRGLQPGTTDQDLVKLCQPYGKIV-STKAIL-DKTTNKCKGYGFVDFDSPSAAQKAVTALKASGV---QAQMA   70 (72)
T ss_dssp             EEEESCCTTCCHHHHHTTSTTTSCEE-EEEEEC-CSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTC---CEESC
T ss_pred             CEEeCCCCcCCHHHHHHHHhhhcccc-cccccc-ccccccccceeEEEECCHHHHHHHHHHhCCCEE---CCEEC
Confidence            79999999999999999998866533 344443 334467889999999999999999999999988   89886

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.78  E-value=4e-09  Score=77.99  Aligned_cols=76  Identities=21%  Similarity=0.225  Sum_probs=59.9

Q ss_pred             EEEecCCCCCCchHHHHHHHHHhhccceecccCCcccC--CCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeec
Q 017670          206 VVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFA--SPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS  283 (368)
Q Consensus       206 V~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys--~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S  283 (368)
                      |||.||++..|.+||+++|.+.+... .++++....-.  .++-|.|||-|.+.++|..||..||+..|   +||+|...
T Consensus         1 LfV~nLp~~~t~~~l~~~F~~~G~v~-~v~i~~~~~~~~~~~~kG~afV~f~~~~~A~~A~~~~~~~~~---~g~~i~V~   76 (85)
T d2cpfa1           1 LFIKNLNFSTTEETLKGVFSKVGAIK-SCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV---DGHKLEVR   76 (85)
T ss_dssp             EEEESCCTTCCHHHHHHHHHTTSCEE-EEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE---TTEECEEE
T ss_pred             CEEcCCCCCCCHHHHHHHHHHhCCcc-ccceecccccccccccceEEEEEECCHHHHHHHHHHhCCCEE---CCEEEEEE
Confidence            79999999999999999998866532 33443322111  13468899999999999999999999877   99999977


Q ss_pred             cC
Q 017670          284 IG  285 (368)
Q Consensus       284 ~g  285 (368)
                      .+
T Consensus        77 ~a   78 (85)
T d2cpfa1          77 IS   78 (85)
T ss_dssp             CS
T ss_pred             EC
Confidence            65

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=8.7e-09  Score=75.48  Aligned_cols=74  Identities=19%  Similarity=0.165  Sum_probs=59.7

Q ss_pred             EEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeecc
Q 017670          205 LVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSI  284 (368)
Q Consensus       205 lV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S~  284 (368)
                      .|||.||+++.|.+||.++|.+.+.. ..++ |+...-++.+-|.|||.|.+.++|+.||. +++.-|   +||+|...+
T Consensus         1 klfV~nl~~~~te~~l~~~F~~~G~i-~~~~-i~~d~~t~~~kg~afV~f~~~~~a~~Al~-~~~~~l---~Gr~i~V~r   74 (75)
T d1hd0a_           1 KMFIGGLSWDTTKKDLKDYFSKFGEV-VDCT-LKLDPITGRSRGFGFVLFKESESVDKVMD-QKEHKL---NGKVIDPKR   74 (75)
T ss_dssp             CEEEECCCTTCCHHHHHHHHHTTSCE-EEEE-CCCBTTTTBCCSEEEEEESSHHHHHHHHH-TCCCCB---TTBCCEECC
T ss_pred             CEEEeCCCCcCCHHHHHHHHHhhccc-cccc-cccCCCCCCcCceEEEEECCHHHHHHHHh-cCCCEE---CCCEEEeeE
Confidence            38999999999999999999986643 3343 44455557788999999999999999996 777755   999987543

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=5.2e-09  Score=77.54  Aligned_cols=72  Identities=17%  Similarity=0.195  Sum_probs=59.2

Q ss_pred             EEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccce-eeecCCceeeec
Q 017670          205 LVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGC-LLLSNGRPLLGS  283 (368)
Q Consensus       205 lV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~c-L~ls~GRPL~~S  283 (368)
                      .|||.||++.+|.+||+++|.+.+. -+.++.+       +.-|.|||-|.+.++|+.||..||+.+ +   +||||.-.
T Consensus         3 ~l~V~nLp~~~te~~L~~~F~~~G~-i~~~~~~-------~~rg~aFV~f~~~~~A~~Ai~~lng~~~~---~G~~i~V~   71 (80)
T d2cqha1           3 KLYIGNLSPAVTADDLRQLFGDRKL-PLAGQVL-------LKSGYAFVDYPDQNWAIRAIETLSGKVEL---HGKIMEVD   71 (80)
T ss_dssp             CEEEECCCTTCCHHHHHHHHHHTTC-CCSSCEE-------EETTEEEECCSCHHHHHHHHHHHTTTCEE---TTEECEEE
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhCc-EEEeEEe-------cccceEEEEECCHHHHHHHHHHhCCCeEE---CCEEEEEE
Confidence            4899999999999999999988653 3333333       235899999999999999999999764 5   99999977


Q ss_pred             cCCC
Q 017670          284 IGTP  287 (368)
Q Consensus       284 ~g~~  287 (368)
                      .+.|
T Consensus        72 ~a~~   75 (80)
T d2cqha1          72 YSVS   75 (80)
T ss_dssp             ECCC
T ss_pred             EcCC
Confidence            7664

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=8.6e-09  Score=78.75  Aligned_cols=80  Identities=11%  Similarity=0.108  Sum_probs=64.5

Q ss_pred             ccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670          203 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG  282 (368)
Q Consensus       203 GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~  282 (368)
                      .+.|||.||.+..|.+||.++|.+.+  -...+++........+.|.|||.|.+.++|+.|+ +||+..|   +||+|.-
T Consensus        15 ~~~v~V~nLp~~~te~~l~~~f~~~g--~~~~~~~~~~~~~g~~~g~afV~f~~~e~a~~~~-~~~~~~~---~gr~l~V   88 (104)
T d1wi8a_          15 PYTAFLGNLPYDVTEESIKEFFRGLN--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL---GNKRIRV   88 (104)
T ss_dssp             CEEEEEESCCSSCCHHHHHHHTTTSC--EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEE---TTEECEE
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHHhc--cccceeeeeeccCCCcceeeeEEECCHHHHHHHH-HcCCCEE---CCEEEEE
Confidence            47899999999999999999998753  3345555555555678899999999999998666 6999877   9999987


Q ss_pred             ccCCCC
Q 017670          283 SIGTPC  288 (368)
Q Consensus       283 S~g~~~  288 (368)
                      ..+.+.
T Consensus        89 ~~a~~~   94 (104)
T d1wi8a_          89 DVADQA   94 (104)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            766544

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.77  E-value=7.4e-09  Score=82.81  Aligned_cols=86  Identities=12%  Similarity=0.062  Sum_probs=68.7

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      +..|.|||.||.+.+|.+||.++|...+... .++++. ..-+..+-|.|||.|.+.++|..||..||+.-|   +||+|
T Consensus        40 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~-d~~t~~~rg~afV~f~~~~~A~~Ai~~lng~~~---~gr~l  114 (139)
T d1u6fa1          40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIE-SVKIVC-DRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNI---LNKRL  114 (139)
T ss_dssp             TTTSEEEEESCSTTCCHHHHHHHHHHHSCEE-EEEEEE-ETTTTEEEEEEEEEESSHHHHHHHHHHTTTEEC---SSCEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhhcccc-cccccc-ccccccccceeeEEECCHHHHHHHHHHhCCCEE---CCEEE
Confidence            3467899999999999999999999877543 233332 233456678999999999999999999999877   99999


Q ss_pred             eeccCCCCCCC
Q 017670          281 LGSIGTPCFTG  291 (368)
Q Consensus       281 ~~S~g~~~~p~  291 (368)
                      ....+.+..+.
T Consensus       115 ~V~~a~~~~~~  125 (139)
T d1u6fa1         115 KVALAASGHQR  125 (139)
T ss_dssp             EEEESSCCCCC
T ss_pred             EEEEcCCCCCC
Confidence            98887655443

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=5.9e-09  Score=78.04  Aligned_cols=78  Identities=13%  Similarity=0.086  Sum_probs=65.6

Q ss_pred             EEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeecc
Q 017670          205 LVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSI  284 (368)
Q Consensus       205 lV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S~  284 (368)
                      .|||.||.+.+|.+||.++|...+. -..++++. ...++.+-|.|||.|.+.++|..|+..||+..|   +||||....
T Consensus         3 rlfV~nlp~~~te~~l~~~F~~~G~-v~~v~i~~-d~~tg~~rg~aFV~f~~~~~A~~a~~~l~~~~l---~g~~l~V~~   77 (85)
T d2u2fa_           3 KLFIGGLPNYLNDDQVKELLTSFGP-LKAFNLVK-DSATGLSKGYAFCEYVDINVTDQAIAGLNGMQL---GDKKLLVQR   77 (85)
T ss_dssp             CEEEETCCSSCCSHHHHHHHTSSSC-EEEEEEEC-CCSSSCCCCEEEEEESSSHHHHHHHHTSSSCCC---SSSCCEEEE
T ss_pred             EEEEECCCCCCCHHHHHHHHHhcCc-cceEEeec-cccccccceeEEEEECCHHHHHHHHHHhCCCEE---CCEEEEEEE
Confidence            4899999999999999999987554 44555554 345567889999999999999999999999887   999999877


Q ss_pred             CCC
Q 017670          285 GTP  287 (368)
Q Consensus       285 g~~  287 (368)
                      +.+
T Consensus        78 A~~   80 (85)
T d2u2fa_          78 ASV   80 (85)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            653

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=3.4e-09  Score=78.20  Aligned_cols=74  Identities=19%  Similarity=0.146  Sum_probs=61.6

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      .+|+.||+.||+  +|.+||+++|.+-+.... .++       .++.|.|||.|.+.++|..||..||+.-|   +|++|
T Consensus         3 ~~~~ti~V~~~~--~te~~L~~~F~~~G~I~~-v~~-------~~~~~~afV~f~~~~~A~~Ai~~lng~~~---~g~~l   69 (79)
T d2bz2a1           3 RKGNTLYVYGED--MTPTLLRGAFSPFGNIID-LSM-------DPPRNCAFVTYEKMESADQAVAELNGTQV---ESVQL   69 (79)
T ss_dssp             CCCCEEEEECSS--CCHHHHHHHHSTTCCCSC-EEE-------ETTTTEEEEECSSHHHHHHHHHHHTTCBC---SSCBC
T ss_pred             CCCCEEEEECCC--CCHHHHHHHHhccCccce-eee-------ccCCCEEEEEEcccHHHHHHHHHhCCCEE---CCEEE
Confidence            578999999996  899999999988765432 222       25678999999999999999999999877   99999


Q ss_pred             eeccCCC
Q 017670          281 LGSIGTP  287 (368)
Q Consensus       281 ~~S~g~~  287 (368)
                      .-+.+.+
T Consensus        70 ~V~~a~~   76 (79)
T d2bz2a1          70 KVNIARK   76 (79)
T ss_dssp             EEEECCS
T ss_pred             EEEEecC
Confidence            9887754

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=2.4e-09  Score=80.86  Aligned_cols=71  Identities=17%  Similarity=0.257  Sum_probs=61.1

Q ss_pred             ccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670          203 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG  282 (368)
Q Consensus       203 GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~  282 (368)
                      .+.|||.||.+.+|.+||++||.+.+-..|         +..++-|.|||.|.+.++|+.||..||+.-|   +||+|..
T Consensus         5 s~~i~V~nLp~~~t~~~l~~lF~~~G~~~~---------~~~~~kg~afV~f~~~~~A~~Ai~~ln~~~~---~G~~l~V   72 (88)
T d1wg1a_           5 SSGILVKNLPQDSNCQEVHDLLKDYDLKYC---------YVDRNKRTAFVTLLNGEQAQNAIQMFHQYSF---RGKDLIV   72 (88)
T ss_dssp             CCCEEEESCCSSCCHHHHHHHTCSSCCCCE---------EEEGGGTEEEECCSCHHHHHHHHHHHTTEEE---TTEEEEE
T ss_pred             CCEEEEeCCCCccChHHHHHHHHhcCceee---------eeeccCCceEEEECCHHHHHHHHHHhCCCEE---CCEEEEE
Confidence            468999999999999999999987652222         2356779999999999999999999999877   9999998


Q ss_pred             ccC
Q 017670          283 SIG  285 (368)
Q Consensus       283 S~g  285 (368)
                      +..
T Consensus        73 ~~a   75 (88)
T d1wg1a_          73 QLQ   75 (88)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            876

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=3.3e-09  Score=81.29  Aligned_cols=79  Identities=16%  Similarity=0.105  Sum_probs=63.9

Q ss_pred             ccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670          203 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG  282 (368)
Q Consensus       203 GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~  282 (368)
                      -+.|||.||++.+|.+||.++|.+.+. -..++++. ...+..+-|.|||-|.+.++|+.||..||+..|   +||+|..
T Consensus         8 ~rtl~V~nLp~~~te~~l~~~f~~~G~-i~~v~i~~-~~~tg~~~g~afV~f~~~~~a~~ai~~l~~~~~---~g~~i~V   82 (104)
T d1p1ta_           8 LRSVFVGNIPYEATEEQLKDIFSEVGP-VVSFRLVY-DRETGKPKGYGFCEYQDQETALSAMRNLNGREF---SGRALRV   82 (104)
T ss_dssp             HSCEEEESCCTTSCHHHHHHHHHTTSC-CSEEEEEE-ETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC---SSSCBEE
T ss_pred             CCEEEEECCCCcCCHHHHHHhhhcccc-cccccccc-ccceeccCCceEEEECCHHHHHHHHHHcCCCEE---CCEEEEE
Confidence            356999999999999999999988654 34555542 233456678999999999999999999998877   9999997


Q ss_pred             ccCC
Q 017670          283 SIGT  286 (368)
Q Consensus       283 S~g~  286 (368)
                      ..+.
T Consensus        83 ~~a~   86 (104)
T d1p1ta_          83 DNAA   86 (104)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            6654

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=5.8e-09  Score=78.59  Aligned_cols=78  Identities=17%  Similarity=0.218  Sum_probs=62.4

Q ss_pred             ccEEEEecCCCCCCchHHHHHHHHHhhcc---ceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          203 GTLVVLENLDPSYTSTVVEDLVWHAFKEN---CSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       203 GtlV~LqNLDps~ts~dVedLi~~a~ke~---c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      .+.|||.||++..|.+||++.+.+.|..-   ...++ ++   +..+.|.|||-|.+.++|..|+..||+.-+   +|||
T Consensus         3 ~~tl~V~nLp~~~t~~dl~~~l~~~f~~~G~i~~i~~-~~---~~~~~g~afV~F~~~~~A~~A~~~~~~~~~---~g~~   75 (91)
T d1nu4a_           3 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILV-SR---SLKMRGQAFVIFKEVSSATNALRSMQGFPF---YDKP   75 (91)
T ss_dssp             CSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEEC-CH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEE---TTEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhcccccccceEE-ee---eccCCCceEEEECCHHHHHHHHHHhCCCEE---CCEE
Confidence            46899999999999999999888776641   22222 11   235679999999999999999999998876   9999


Q ss_pred             eeeccCCC
Q 017670          280 LLGSIGTP  287 (368)
Q Consensus       280 L~~S~g~~  287 (368)
                      |....+..
T Consensus        76 l~v~~ak~   83 (91)
T d1nu4a_          76 MRIQYAKT   83 (91)
T ss_dssp             CEEEECSS
T ss_pred             EEEEEeCC
Confidence            99887643

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.75  E-value=5.8e-09  Score=78.43  Aligned_cols=75  Identities=21%  Similarity=0.223  Sum_probs=62.9

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      +.+.|||.||.+.++.+||.++|.+.+. --.++|++       +-|.|||.|.+.++|+.||..||+..+   +||+|.
T Consensus         7 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~-i~~i~~~~-------~k~~afV~f~~~~~A~~A~~~l~g~~i---~g~~l~   75 (86)
T d2cpja1           7 QRSRLFVGNLPPDITEEEMRKLFEKYGK-AGEVFIHK-------DKGFGFIRLETRTLAEIAKVELDNMPL---RGKQLR   75 (86)
T ss_dssp             CTTEEEEESCCTTCCHHHHHHHTSTTCC-CSEEEEET-------TTTEEEEECSSSHHHHHHHHHHTTCCB---TTBCCE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhCC-ceEeeeec-------ccceEEEEECCHHHHHHHHHHhCCCEE---CCEEEE
Confidence            4567999999999999999999988554 34555553       468999999999999999999999877   999999


Q ss_pred             eccCCC
Q 017670          282 GSIGTP  287 (368)
Q Consensus       282 ~S~g~~  287 (368)
                      .+.+.+
T Consensus        76 V~~A~~   81 (86)
T d2cpja1          76 VRFACH   81 (86)
T ss_dssp             EEESSC
T ss_pred             EEECCC
Confidence            876644

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=4.9e-09  Score=79.97  Aligned_cols=84  Identities=14%  Similarity=0.054  Sum_probs=67.2

Q ss_pred             HHHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecC
Q 017670          197 RVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN  276 (368)
Q Consensus       197 r~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~  276 (368)
                      +.+.+.++.||+.||.+..|.+||+++|...+ .-..++++ ....++.+-|.|||.|.+.++|+.||...+  .|   +
T Consensus         2 k~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G-~i~~v~i~-~d~~tg~srG~aFV~f~~~~~a~~al~~~~--~l---~   74 (90)
T d2cqga1           2 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFG-EVLMVQVK-KDLKTGHSKGFGFVRFTEYETQVKVMSQRH--MI---D   74 (90)
T ss_dssp             SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGS-CEEEEEEE-ECSSSCSEEEEEEEEESSHHHHHHHHHSCE--EE---T
T ss_pred             CCCCcCCCeEEEECCCCCCCHHHHHHHHHhhc-ccceeeec-cCCCCcccCCEEEEEECCHHHHHHHHhcCC--cc---C
Confidence            34667889999999999999999999999854 55556544 334457788999999999999999998654  34   9


Q ss_pred             CceeeeccCCC
Q 017670          277 GRPLLGSIGTP  287 (368)
Q Consensus       277 GRPL~~S~g~~  287 (368)
                      ||+|....+.+
T Consensus        75 Gr~i~v~~a~~   85 (90)
T d2cqga1          75 GRWCDCKLPNS   85 (90)
T ss_dssp             TEEEEEECCCT
T ss_pred             CEEeEEEeCCC
Confidence            99999776644

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=8.6e-09  Score=78.83  Aligned_cols=77  Identities=22%  Similarity=0.139  Sum_probs=60.0

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      +..+.|||.||.+.+|.+||+++|...+.. ....++ .......+.|.|||.|.+.++|+.||. +|+.-|   +||+|
T Consensus         6 ~~~~~v~v~nLp~~~t~~~l~~~F~~~g~i-~~~~~~-~~~~~g~~~G~afV~F~s~~~a~~Al~-~n~~~i---~gr~i   79 (103)
T d2cpya1           6 SAKVCAHITNIPFSITKMDVLQFLEGIPVD-ENAVHV-LVDNNGQGLGQALVQFKNEDDARKSER-LHRKKL---NGREA   79 (103)
T ss_dssp             SCCCEEEEESCCTTSCHHHHHHHTTTSCCC-STTEEE-CCCTTSSCSSCEEEECSSHHHHHHHGG-GCSEEE---TTEEE
T ss_pred             CCceEEEEeCCCCCCCHHHHhhhhcccceE-EEEEEE-EeCCCCCcCccEEEEECCHHHHHHHHh-cCCCeE---CCcEE
Confidence            346789999999999999999999765432 222222 223346889999999999999999995 888867   99999


Q ss_pred             eec
Q 017670          281 LGS  283 (368)
Q Consensus       281 ~~S  283 (368)
                      .-.
T Consensus        80 ~V~   82 (103)
T d2cpya1          80 FVH   82 (103)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            843

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=2.2e-08  Score=74.51  Aligned_cols=76  Identities=14%  Similarity=0.047  Sum_probs=61.8

Q ss_pred             ccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670          203 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG  282 (368)
Q Consensus       203 GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~  282 (368)
                      .+.|||.||.+.+|.+||.++|...+.. ..++++     ...+-|.|||-|.+.+.|..|+..|++..|  .+||||--
T Consensus        10 s~tL~V~NLp~~~te~~l~~~F~~~G~v-~~~~~~-----~~~~~~~afV~f~~~~~A~~A~~~l~~~~i--~~g~~l~v   81 (88)
T d2adca2          10 SATLHLSNIPPSVSEEDLKVLFSSNGGV-VKGFKF-----FQKDRKMALIQMGSVEEAVQALIDLHNHDL--GENHHLRV   81 (88)
T ss_dssp             CSEEEEECCCTTCCHHHHHHHHHTTSCC-EEEEEE-----CSSSTTCEEEEESSHHHHHHHHHHHTTCBS--SSSCBCEE
T ss_pred             CCEEEEECCCCCCCHHHHHHHhhccCCE-EEEEEe-----eecccceeEEEECCHHHHHHHHHhccCCEe--cCCCEEEE
Confidence            4789999999999999999999887754 233332     234568999999999999999999999876  47999987


Q ss_pred             ccCC
Q 017670          283 SIGT  286 (368)
Q Consensus       283 S~g~  286 (368)
                      +++.
T Consensus        82 ~~sk   85 (88)
T d2adca2          82 SFSK   85 (88)
T ss_dssp             EECS
T ss_pred             EeCC
Confidence            7654

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=98.69  E-value=1.9e-08  Score=76.45  Aligned_cols=77  Identities=14%  Similarity=0.112  Sum_probs=63.0

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      ..+.|||.||+++.|.+||+++|.+.+... .++++.  ..+..+-|.|||-|.+.++|+.||. ||..-|   +||+|.
T Consensus        12 ~~~~ifV~nL~~~~te~~l~~~F~~~G~i~-~~~v~~--~~~g~~kg~afv~F~~~e~a~~Al~-~~g~~~---~g~~i~   84 (91)
T d1fjeb1          12 TPFNLFIGNLNPNKSVAELKVAISELFAKN-DLAVVD--VRTGTNRKFGYVDFESAEDLEKALE-LTGLKV---FGNEIK   84 (91)
T ss_dssp             SSEEEEEECCCTTSCHHHHHHHHHHHHHHH-TCCCCE--EEEETTTTEEEEEESSHHHHHHHHH-GGGEEE---TTEEEE
T ss_pred             CCcEEEEeCccCcchHHHHHHHHhcCCcEE-Eeeeee--cCCCCccEEeEEeeCCHHHHHHHHh-cCCcEE---CCEEEE
Confidence            467899999999999999999999877543 344442  3346788999999999999999994 988877   999997


Q ss_pred             eccC
Q 017670          282 GSIG  285 (368)
Q Consensus       282 ~S~g  285 (368)
                      -.++
T Consensus        85 V~~a   88 (91)
T d1fjeb1          85 LEKP   88 (91)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            5544

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.69  E-value=9.9e-09  Score=79.14  Aligned_cols=74  Identities=20%  Similarity=0.147  Sum_probs=62.5

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      ..+.|||.||.+.+|.+||.++|.+.+. -+.+++.        ..|.|||.|.+.++|..||.+||...|   +||+|.
T Consensus        14 ~~~~i~V~Nlp~~~~~~~L~~~F~~~G~-v~~~~i~--------~~g~afV~f~~~~~a~~Ai~~lng~~~---~g~~i~   81 (98)
T d1wg4a_          14 SDFRVLVSGLPPSGSWQDLKDHMREAGD-VCYADVQ--------KDGMGMVEYLRKEDMEYALRKLDDTKF---RSHEGE   81 (98)
T ss_dssp             CSCEEEEECCCSSCCHHHHHHHHTTSSC-EEEEEEE--------TTTEEEEEESSHHHHHHHHHHHSSEEE---ECTTSC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhhcc-ccccccc--------ccceEEEEECCHHHHHHHHHHhCCCEe---CCeEEE
Confidence            4568999999999999999999987664 3455543        248999999999999999999999988   999998


Q ss_pred             eccCCC
Q 017670          282 GSIGTP  287 (368)
Q Consensus       282 ~S~g~~  287 (368)
                      .+...+
T Consensus        82 v~~~~~   87 (98)
T d1wg4a_          82 TSYIRV   87 (98)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            877643

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=98.67  E-value=1.9e-08  Score=74.54  Aligned_cols=74  Identities=14%  Similarity=0.123  Sum_probs=59.8

Q ss_pred             ccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670          203 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG  282 (368)
Q Consensus       203 GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~  282 (368)
                      ++.|||.||.+.+|.+||.++|.+-+.. -.+++++      .+-|.|||.|.+.++|..|+..|++..|  .+|+||..
T Consensus         8 ~~tl~V~nLp~~~t~~~l~~~f~~~G~i-~~v~~~~------~~~g~afV~f~~~~~A~~A~~~l~g~~~--~~~~~i~v   78 (83)
T d2b0ga1           8 NQILFLTNLPEETNEMMLSMLFNQFPGF-KEVRLVP------NRHDIAFVEFTTELQSNAAKEALQGFKI--TPTHAMKI   78 (83)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHTTSTTE-EEEEECT------TTCSCEEEEESSHHHHHHHHHHHTTCBS--STTCBCEE
T ss_pred             CCEEEEECCCCCCCHHHHHhhhccCccE-EEeeeec------ccceeEEEecCCHHHHHHHHHHhCCcEe--CCCcEEEE
Confidence            5789999999999999999999886643 2444443      2358999999999999999999998755  47899876


Q ss_pred             ccC
Q 017670          283 SIG  285 (368)
Q Consensus       283 S~g  285 (368)
                      +.+
T Consensus        79 ~~a   81 (83)
T d2b0ga1          79 TFA   81 (83)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            543

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=1.9e-08  Score=77.37  Aligned_cols=84  Identities=14%  Similarity=0.091  Sum_probs=65.6

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      ....|+|.||-+..|.+||+++|...+-......++..  ....+.|.|||.|.+.++|+.|+. +|...|   +||+|.
T Consensus        14 ~~~~v~v~nLP~~~te~dI~~~F~~~g~v~~~v~~~~~--~~~~~kG~afV~F~~~e~a~~a~~-~~~~~i---~gR~i~   87 (104)
T d1wg5a_          14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD--FQGRSTGEAFVQFASQEIAEKALK-KHKERI---GHRYIE   87 (104)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC--SSSCBCSEEEEEESSHHHHHHHHT-TTTCCS---SSSCCE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEEeC--CCCCcceEEEEEeCCHHHHHHHHh-hCCCEE---cceEEE
Confidence            34579999999999999999999887655444434333  346888999999999999999995 888877   999998


Q ss_pred             eccCCCCCCC
Q 017670          282 GSIGTPCFTG  291 (368)
Q Consensus       282 ~S~g~~~~p~  291 (368)
                      -....+....
T Consensus        88 V~~~~~~~~~   97 (104)
T d1wg5a_          88 IFKSSRAEVR   97 (104)
T ss_dssp             EEEECTTTSC
T ss_pred             EEECCHHHhc
Confidence            6665554443

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.66  E-value=1.8e-08  Score=78.84  Aligned_cols=77  Identities=10%  Similarity=0.036  Sum_probs=59.5

Q ss_pred             cccEEEEecCCCCC-CchH----HHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecC
Q 017670          202 HGTLVVLENLDPSY-TSTV----VEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN  276 (368)
Q Consensus       202 ~GtlV~LqNLDps~-ts~d----VedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~  276 (368)
                      ..+.||+.||++.+ ++++    +++||...+.. +..+++       +..|.|||-|.+.++|..||..||+..|   +
T Consensus         4 ~~~~L~v~nl~~~v~~~d~~k~~l~~lF~~~G~i-~~~~~~-------k~~~~afV~f~~~~~A~~Ai~~lng~~~---~   72 (104)
T d1weya_           4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKD-TTFQYF-------KSFKRVRINFSNPLSAADARLRLHKTEF---L   72 (104)
T ss_dssp             CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSS-CEEEEE-------TTTTEEEEECSSTTHHHHHHHTSTTSEE---T
T ss_pred             CCceEEEEeCCchhcCcHHHHHHHHHHhcccccc-eEEEEe-------cCCCEEEEEECCHHHHHHHHHHhccccc---C
Confidence            45789999999997 5543    55555554433 444444       4568899999999999999999999988   9


Q ss_pred             CceeeeccCCCCC
Q 017670          277 GRPLLGSIGTPCF  289 (368)
Q Consensus       277 GRPL~~S~g~~~~  289 (368)
                      ||||....+.+..
T Consensus        73 g~~l~v~~a~~~~   85 (104)
T d1weya_          73 GKEMKLYFAQTLH   85 (104)
T ss_dssp             TEECEEECCCCSS
T ss_pred             CCEeEEeecccCC
Confidence            9999998885443

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=2.4e-08  Score=77.49  Aligned_cols=75  Identities=17%  Similarity=0.148  Sum_probs=61.6

Q ss_pred             ccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670          203 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG  282 (368)
Q Consensus       203 GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~  282 (368)
                      .+.|||.||++.+|.+||+++|...+ +-..++++ +...+..+-|.|||.|.+.++|..|| .||+.-|   +||+|.-
T Consensus        18 ~~tifV~nL~~~~te~~l~~~F~~~G-~V~~v~i~-~d~~tg~~kG~afV~F~~~e~a~~A~-~l~g~~~---~G~~l~V   91 (101)
T d2cq4a1          18 ARTVFCMQLAARIRPRDLEDFFSAVG-KVRDVRII-SDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRL---LGVPIIV   91 (101)
T ss_dssp             HTEEEEESCCTTCCHHHHHHHHTTTS-CEEEEEEC-CSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEE---TTEEEEE
T ss_pred             CCEEEEECCCCCCCHHHHHHHHcCCC-eEEEEEee-ecCCCccccceEEEEECCHHHHHHHH-HHCCCEE---CCEEEEE
Confidence            36799999999999999999999854 33445444 44555678899999999999999999 5999877   9999985


Q ss_pred             c
Q 017670          283 S  283 (368)
Q Consensus       283 S  283 (368)
                      .
T Consensus        92 ~   92 (101)
T d2cq4a1          92 Q   92 (101)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1.2e-08  Score=78.61  Aligned_cols=77  Identities=17%  Similarity=0.109  Sum_probs=61.3

Q ss_pred             hcccEEEEecCCCC-CCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          201 EHGTLVVLENLDPS-YTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       201 E~GtlV~LqNLDps-~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      ..++.|||.||+|. .+..||+++|.+.+... .++|         +-|.|||-|.+.++|+.||..||...|   +||+
T Consensus        13 ~~~~~lfV~nL~~~~~~~~~L~~~F~~~G~i~-~~~i---------~rg~aFV~f~~~~~A~~Ai~~lng~~~---~g~~   79 (98)
T d1wf2a_          13 SMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIV-GCSV---------HKGFAFVQYVNERNARAAVAGEDGRMI---AGQV   79 (98)
T ss_dssp             SCCCCEEEEEECTTTCCHHHHHHSSTTSSCEE-EEEE---------ETEEEEEEESSHHHHHHHHHTTTTCEE---TTEE
T ss_pred             CCCcEEEEeCCCcccCCHHHHHHHHhhcCCEE-EEEE---------eCCeEEEEECCHHHHHHHHHHcCCCEE---CCEE
Confidence            34567999999975 55668999999866542 2333         358999999999999999999999877   9999


Q ss_pred             eeeccCCCCCC
Q 017670          280 LLGSIGTPCFT  290 (368)
Q Consensus       280 L~~S~g~~~~p  290 (368)
                      |....+.+.-+
T Consensus        80 l~V~~a~~~~~   90 (98)
T d1wf2a_          80 LDINLAAEPKV   90 (98)
T ss_dssp             CEEEETTSCCC
T ss_pred             EEEEECCCCCC
Confidence            99888765433

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=9.4e-09  Score=79.06  Aligned_cols=80  Identities=14%  Similarity=0.020  Sum_probs=61.4

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      .|..|||.||.+..|.+||+++|....  -+.++++-.  -...+.|.|||.|.+.++|+.|+. +|+..|   +||++.
T Consensus        14 ~~~~v~v~nLp~~~te~dl~~~F~~~~--~~~v~~~~~--~~g~~~G~afVeF~~~~~a~~Al~-~~~~~i---~gR~I~   85 (102)
T d1weza_          14 TGHCVHMRGLPYRATENDIYNFFSPLN--PMRVHIEIG--PDGRVTGEADVEFATHEDAVAAMA-KDKANM---QHRYVE   85 (102)
T ss_dssp             SSCEEEEESCCTTCCHHHHHHSSCSCC--CSEEEEEES--SSSCEEEEEEEECSSSHHHHHHHT-TSSCCS---SSSCCE
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHhccC--cceeeeEEe--cCCcceEEEEEEECCHHHHHHHHH-cCCCEE---CCEEEE
Confidence            456899999999999999999997632  223333322  235778999999999999999996 799987   999988


Q ss_pred             eccCCCCC
Q 017670          282 GSIGTPCF  289 (368)
Q Consensus       282 ~S~g~~~~  289 (368)
                      -....+..
T Consensus        86 V~~s~~~~   93 (102)
T d1weza_          86 LFLNSTAG   93 (102)
T ss_dssp             EEEECCCC
T ss_pred             EEEcCCCC
Confidence            66554443

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=6.5e-09  Score=81.35  Aligned_cols=77  Identities=17%  Similarity=0.099  Sum_probs=59.1

Q ss_pred             HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      .+.+..|||.||.+.+|.+||.++|...+.. -.+ ++....-+....|.|||.|.+.++|+.|+. +|+..|   +||+
T Consensus        15 ~~~~~~i~v~nLp~~~t~~di~~~F~~~g~~-~~~-~~~~~~~~g~~~G~afVeF~~~e~a~~al~-~~~~~i---~gR~   88 (112)
T d1wela1          15 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIV-EDS-IYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYM---GNRF   88 (112)
T ss_dssp             CCCCCEEEEECCCTTCCHHHHHHHSCSSCBC-TTT-CEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCS---TTSC
T ss_pred             CCCCeEEEEecCCCcCcHHHHhhHHhhcccc-ccc-eeeecCcccceeeEEEEEECCHHHHHHHHH-cCCCcC---CCEE
Confidence            4578899999999999999999999543221 111 122223345788999999999999999995 899987   9999


Q ss_pred             eee
Q 017670          280 LLG  282 (368)
Q Consensus       280 L~~  282 (368)
                      +.-
T Consensus        89 i~V   91 (112)
T d1wela1          89 IQV   91 (112)
T ss_dssp             BEE
T ss_pred             EEE
Confidence            863

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=2.2e-08  Score=75.05  Aligned_cols=74  Identities=16%  Similarity=0.137  Sum_probs=60.1

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      +.+.|||.||.+.+|.+||+++|...+...+ ++|.. . -++.+-|.|||.|.+.++|..||. +++.-+   +||+|.
T Consensus         5 ~~rtvfV~nlp~~~te~~l~~~F~~~G~v~~-v~l~~-~-~~~~~kG~afV~f~~~e~a~~al~-~~~~~~---~g~~l~   77 (85)
T d1zh5a2           5 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLN-IQMRR-T-LHKAFKGSIFVVFDSIESAKKFVE-TPGQKY---KETDLL   77 (85)
T ss_dssp             HTTEEEEECCCTTCCHHHHHHHHTTSCCEEE-EEEEE-C-TTCCEEEEEEEEESCHHHHHHHHT-CCCCEE---TTEECE
T ss_pred             CcCEEEEECCCCCCCHHHHHHHHHHhccccc-ceeee-e-ccCCcceEEEEEEcCHHHHHHHHH-HCCCEE---CCEEEE
Confidence            4578999999999999999999998776544 34432 2 246778999999999999999995 677666   999987


Q ss_pred             e
Q 017670          282 G  282 (368)
Q Consensus       282 ~  282 (368)
                      .
T Consensus        78 v   78 (85)
T d1zh5a2          78 I   78 (85)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=4e-08  Score=73.46  Aligned_cols=79  Identities=14%  Similarity=0.063  Sum_probs=63.3

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      |+.+.|||.||.+..|.+||+++|..-+ .--.++|+ ....+..+-|.|||.|.+.++|+.||. +++.-|   +||+|
T Consensus         4 e~~~~lfV~nlp~~~te~~l~~~F~~~G-~i~~v~i~-~d~~tg~~kG~afV~f~~~~~a~~ai~-~~~~~i---~Gr~i   77 (84)
T d1l3ka1           4 EQLRKLFIGGLSFETTDESLRSHFEQWG-TLTDCVVM-RDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKV---DGRVV   77 (84)
T ss_dssp             GGGGEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEE-ECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEE---TTEEC
T ss_pred             CCCcEEEEECCCCCCCHHHHHHHHHhhc-cccceeec-ccccCCCcccEEEEEEcCHHHHHHHHH-hCCCEE---CCEEE
Confidence            4568899999999999999999998755 43455544 344556788999999999999999997 577766   99998


Q ss_pred             eeccC
Q 017670          281 LGSIG  285 (368)
Q Consensus       281 ~~S~g  285 (368)
                      ...++
T Consensus        78 ~V~~A   82 (84)
T d1l3ka1          78 EPKRA   82 (84)
T ss_dssp             EEEEC
T ss_pred             EEEee
Confidence            76544

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.58  E-value=2.9e-08  Score=73.44  Aligned_cols=74  Identities=12%  Similarity=0.072  Sum_probs=60.2

Q ss_pred             EEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeecc
Q 017670          205 LVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSI  284 (368)
Q Consensus       205 lV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S~  284 (368)
                      .|||.||.+..|.+||+++|.+.+. -..+++ +....++.+-|.|||.|.+.++|+.||. +|...|   +||+|....
T Consensus         2 klfV~nLp~~~te~~l~~~F~~~G~-i~~v~i-~~d~~tg~~kG~aFV~f~~~~~a~~al~-~~~~~i---~Gr~i~V~~   75 (77)
T d1uawa_           2 KMFIGGLSWQTTQEGLREYFGQFGE-VKECLV-MRDPLTKRSRGFGFVTFMDQAGVDKVLA-QSRHEL---DSKTIDPKV   75 (77)
T ss_dssp             CEEEESCCSSCCSHHHHHHHTTTSC-CCCEEE-ECCCCSSSCSSEEEECCCCTTHHHHHHH-TTTCCC---SSCCCEEEE
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHhCC-cceeee-ecccCCCCccceEEEEECCHHHHHHHHH-cCCCEE---CCeEEEEEE
Confidence            5899999999999999999987664 233433 4456667788999999999999999997 687766   999986543

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.55  E-value=9.9e-08  Score=73.44  Aligned_cols=78  Identities=18%  Similarity=0.177  Sum_probs=61.9

Q ss_pred             hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670          201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL  280 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL  280 (368)
                      +..++|||.||.+.+|.+||.+||..-+. -...+++       +.-|.|||-|.+.++|..||..|+..-+.+ +||||
T Consensus        13 ~ps~~l~v~nlp~~~te~~l~~~F~~fG~-I~~~~~~-------~~k~~AfV~f~~~e~A~~ai~~~~~~~~~~-~g~~l   83 (104)
T d1wexa_          13 SVSPVVHVRGLCESVVEADLVEALEKFGT-ICYVMMM-------PFKRQALVEFENIDSAKECVTFAADVPVYI-AGQQA   83 (104)
T ss_dssp             CCCSEEEEESCCSSCCHHHHHHHHTTTSC-EEEEEEE-------TTTTEEEEEESSHHHHHHHHHHHHHSCCBS-SSSBC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHhhhhccc-ceEEEEE-------ecceeEEEEeCCHHHHHHHHHHHcCCCcEE-eeEEE
Confidence            34789999999999999999999977543 3444443       456899999999999999999997544433 99999


Q ss_pred             eeccCCC
Q 017670          281 LGSIGTP  287 (368)
Q Consensus       281 ~~S~g~~  287 (368)
                      .-..+..
T Consensus        84 ~v~~s~~   90 (104)
T d1wexa_          84 FFNYSTS   90 (104)
T ss_dssp             EEEECSS
T ss_pred             EEEEcCC
Confidence            8766643

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.52  E-value=2.9e-08  Score=75.23  Aligned_cols=76  Identities=16%  Similarity=0.142  Sum_probs=60.8

Q ss_pred             hcccEEEEecCCCC-CCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          201 EHGTLVVLENLDPS-YTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       201 E~GtlV~LqNLDps-~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      |..++|||.||+.+ +|.+|+.+||..- +.-..++|++       .-|.|||-|.+.++|..||..|+..-+.+ +|||
T Consensus         6 ~~sr~v~v~nl~~~~~t~~eL~~lF~~f-G~I~~i~i~~-------~k~~afV~f~~~~~A~~A~~~l~~~~~~~-~gr~   76 (89)
T d1x4da1           6 ETRRVVHIMDFQRGKNLRYQLLQLVEPF-GVISNHLILN-------KINEAFIEMATTEDAQAAVDYYTTTPALV-FGKP   76 (89)
T ss_dssp             CCCCEEEEESCCCSSSHHHHHHTTTGGG-SCEEEEEECS-------SSSCEEEEESSHHHHHHHHHHHHHSCCEE-TTEE
T ss_pred             CCCcEEEEECCCCCcCCHHHHHHHHHhh-CCeEEEEeec-------cceEEEEEEcchhhHHHHHHHHhhCCCcc-CCce
Confidence            56899999999997 7889999999884 4445666654       34679999999999999999886544444 9999


Q ss_pred             eeeccC
Q 017670          280 LLGSIG  285 (368)
Q Consensus       280 L~~S~g  285 (368)
                      |.-+.+
T Consensus        77 l~V~~s   82 (89)
T d1x4da1          77 VRVHLS   82 (89)
T ss_dssp             CEEEEE
T ss_pred             EEEEEC
Confidence            987664

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=8.7e-08  Score=71.78  Aligned_cols=78  Identities=14%  Similarity=0.169  Sum_probs=60.0

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      ..+.|||.||++..|.+||+++|.+.+... .+++      ...+.|.|||-|.+.++|+.||.  + +. ++ +||+|.
T Consensus         4 ~s~~lfV~nLp~~~te~~L~~~F~~~G~v~-~v~~------~~~~~gfafV~f~~~~~a~~a~~--~-~~-~i-~g~~l~   71 (88)
T d1wf0a_           4 GSSGVFVGRCTGDMTEDELREFFSQYGDVM-DVFI------PKPFRAFAFVTFADDQIAQSLCG--E-DL-II-KGISVH   71 (88)
T ss_dssp             CCCEEEEESCCSSSCHHHHHHHSTTTSCCC-EEEC------CSSCCSCCEEECSCHHHHHHTTT--C-EE-EE-TTEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcCCce-EEEE------eeccCceEEEEECCHHHHHHHHh--C-CC-EE-CCEEeE
Confidence            357899999999999999999998866432 2322      23456899999999999999985  3 32 23 999999


Q ss_pred             eccCCCCCCC
Q 017670          282 GSIGTPCFTG  291 (368)
Q Consensus       282 ~S~g~~~~p~  291 (368)
                      ...+.+....
T Consensus        72 v~~a~~k~~~   81 (88)
T d1wf0a_          72 ISNAEPKHNS   81 (88)
T ss_dssp             EECCCCCCCC
T ss_pred             EEeCCCCCCC
Confidence            9888665433

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.39  E-value=2.8e-07  Score=70.06  Aligned_cols=75  Identities=11%  Similarity=0.034  Sum_probs=59.4

Q ss_pred             ccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670          203 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG  282 (368)
Q Consensus       203 GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~  282 (368)
                      -+.|||.||.+.+|.+||.++|...+... .++++       ++-|.|||-|.+.++|..|+..||+..| .-.+++|-.
T Consensus        17 s~tl~V~nLp~~~t~~~l~~~f~~~G~i~-~~~~~-------~~~~~afV~f~~~~~A~~A~~~l~~~~i-~g~~~~l~v   87 (97)
T d1whya_          17 TTRLWVGGLGPNTSLAALAREFDRFGSIR-TIDHV-------KGDSFAYIQYESLDAAQAACAKMRGFPL-GGPDRRLRV   87 (97)
T ss_dssp             CSCEEEECCCSSCCHHHHHHHHHTTSCEE-EEEEC-------SSSCCEEEEESSHHHHHHHHHHHTTCBC-SSSSCBCEE
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhhcccc-eEeee-------ccccEEEeccCCHHHHHHHHHHhCCCEe-CCCceEEEE
Confidence            37799999999999999999998876433 33333       3467899999999999999999999877 113468887


Q ss_pred             ccCC
Q 017670          283 SIGT  286 (368)
Q Consensus       283 S~g~  286 (368)
                      ..+.
T Consensus        88 ~~ak   91 (97)
T d1whya_          88 DFAK   91 (97)
T ss_dssp             EECC
T ss_pred             EeCC
Confidence            6654

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1e-07  Score=73.64  Aligned_cols=75  Identities=12%  Similarity=-0.018  Sum_probs=58.5

Q ss_pred             cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeec
Q 017670          204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS  283 (368)
Q Consensus       204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S  283 (368)
                      +.|+|.||++.+|.+||.++|...|.. ..++++.     ..+.|.|||-|.+.++|..||..||+.-|.. .|++|--.
T Consensus         8 ~~v~V~NL~~~vte~~L~~~F~~~G~i-~~~~i~~-----~~~~g~aFV~f~~~e~A~~Ai~~ln~~~l~~-~~~~l~v~   80 (108)
T d2adba1           8 LRIIVENLFYPVTLDVLHQIFSKFGTV-LKIITFT-----KNNQFQALLQYADPVSAQHAKLSLDGQNIYN-ACCTLRID   80 (108)
T ss_dssp             EEEESCSCCSTTHHHHHHHHHTTTSCE-EEEEEEE-----ETTEEEEEEEESCHHHHHHHHHHHHSCCSST-TCCCCEEE
T ss_pred             EEEEEeCcCCCCCHHHHHHHHccCCcE-EEEEEEe-----eCCCCeEEEEECCHHHHHHHHHHHCCCEecc-CCcEEEEE
Confidence            468899999999999999999997764 2333332     2457999999999999999999999987632 67777644


Q ss_pred             cC
Q 017670          284 IG  285 (368)
Q Consensus       284 ~g  285 (368)
                      ..
T Consensus        81 ~s   82 (108)
T d2adba1          81 FS   82 (108)
T ss_dssp             EC
T ss_pred             ec
Confidence            43

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=2e-07  Score=71.56  Aligned_cols=75  Identities=24%  Similarity=0.242  Sum_probs=58.4

Q ss_pred             HhcccEEEEecCCC-CCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhh--ccceeeecC
Q 017670          200 HEHGTLVVLENLDP-SYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKL--EEGCLLLSN  276 (368)
Q Consensus       200 ~E~GtlV~LqNLDp-s~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kl--n~~cL~ls~  276 (368)
                      .+.|++|||.||.+ ++|.+||.++|..-|. --.+++.       ++-|.|||.|.+.++|..||..+  +..-+   +
T Consensus        15 ~~~~~~l~v~nLp~~~~te~~l~~~F~~fG~-V~~v~~~-------~~k~~afV~f~~~~~A~~Ai~~~~~~~~~~---~   83 (99)
T d1x4fa1          15 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGK-IKNYILM-------RMKSQAFIEMETREDAMAMVDHCLKKALWF---Q   83 (99)
T ss_dssp             SCCCCEEEEESCCCSSCCSHHHHTTTTTTSC-CSEEEEE-------TTTTEEEEECSSHHHHHHHHHHHHHSCCCS---S
T ss_pred             CCCCCEEEEeCCcCCccCHHHHHhhhccccc-eeEEEEe-------ecCCcEEEEecchHHHHHHHHHHhcCCceE---C
Confidence            46799999999965 6999999999987553 3334443       34689999999999999999854  44444   9


Q ss_pred             CceeeeccC
Q 017670          277 GRPLLGSIG  285 (368)
Q Consensus       277 GRPL~~S~g  285 (368)
                      ||||..+..
T Consensus        84 gr~l~V~~s   92 (99)
T d1x4fa1          84 GRCVKVDLS   92 (99)
T ss_dssp             SSCCEEEEE
T ss_pred             CEEEEEEEc
Confidence            999987654

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=7e-07  Score=65.84  Aligned_cols=72  Identities=14%  Similarity=0.088  Sum_probs=55.8

Q ss_pred             EEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670          205 LVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG  282 (368)
Q Consensus       205 lV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~  282 (368)
                      .|||.||.++.|.+||+++|.+-+.. ..+++ +....+..+-|.|||.|.+.++|+.||.. +..-|   +||.+-.
T Consensus         1 klfVgnLp~~~te~~l~~~F~~~G~I-~~v~i-~~d~~t~~~rG~~FV~f~~~~~a~~al~~-~~~~i---~g~~i~v   72 (75)
T d1x0fa1           1 KIFVGGLSPDTPEEKIREYFGGFGEV-ESIEL-PMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNV---GLSKCEI   72 (75)
T ss_dssp             EEEEESCCSSCCHHHHHHHHHHHSCE-EEEEC-CCCTTTCCTTCCEEEEESSSHHHHHHTTC-SSCCB---TTBCCEE
T ss_pred             CEEEcCCCCCCCHHHHHHHHHHhCCc-ccccc-cccccccccccEEEEEECCHHHHHHHHhh-CCCEE---CCEEeEE
Confidence            48999999999999999999996543 34443 33344567889999999999999999976 33333   8887643

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=4.7e-07  Score=72.97  Aligned_cols=81  Identities=11%  Similarity=0.053  Sum_probs=63.1

Q ss_pred             HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670          200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      ....+.|+|.||++.+|.++|.++|...+ .-+.+.++. ..-++.+.|.|||.|.+.++|+.||. ++..-+   +||+
T Consensus        94 ~~~~~~i~V~~lp~~~te~~L~~~f~~~G-~v~~~~i~~-~~~~~~~~g~~fV~f~~~e~A~~Al~-~~~~~~---~G~~  167 (183)
T d1u1qa_          94 HLTVKKIFVGGIKEDTEEHHLRDYFEQYG-KIEVIEIMT-DRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTV---NGHN  167 (183)
T ss_dssp             TCCCSEEEEECCCTTCCHHHHHHHHGGGS-CEEEEEEEE-CTTTCCEEEEEEEEESCHHHHHHHHT-SSCEEE---TTEE
T ss_pred             ccccceeEEccCCCcCCHHHHhhhhccCC-ceeeeeeec-ccccCccceeEEEEECCHHHHHHHHH-hCCCeE---CCEE
Confidence            44567899999999999999999997754 445555443 23345778999999999999999997 566555   8999


Q ss_pred             eeeccCC
Q 017670          280 LLGSIGT  286 (368)
Q Consensus       280 L~~S~g~  286 (368)
                      |..+.+.
T Consensus       168 i~V~~A~  174 (183)
T d1u1qa_         168 CEVRKAL  174 (183)
T ss_dssp             EEEEECC
T ss_pred             EEEEecC
Confidence            9876554

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=2e-06  Score=66.23  Aligned_cols=79  Identities=15%  Similarity=0.245  Sum_probs=54.1

Q ss_pred             hcccEEEEecCCCCCCchHH----------HHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccc
Q 017670          201 EHGTLVVLENLDPSYTSTVV----------EDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEG  270 (368)
Q Consensus       201 E~GtlV~LqNLDps~ts~dV----------edLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~  270 (368)
                      ...++|+|+|+   |++.|+          +|-|++.|..-.....|  .-..+.+.|.|||.|.+.++|..|+..||+.
T Consensus         6 ~~~r~v~l~nm---f~~~~~~~~~~~~~~i~edv~~~~~~~G~V~~v--~~~~~~~~G~~fV~f~~~e~A~~A~~~lng~   80 (99)
T d2dita1           6 RHERVVIIKNM---FHPMDFEDDPLVLNEIREDLRVECSKFGQIRKL--LLFDRHPDGVASVSFRDPEEADYCIQTLDGR   80 (99)
T ss_dssp             CSCCEEEEESS---CCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEE--EEETTCTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred             CCccEEEEccC---CCHHHhhcchHHHHHHHHHHHHHhcCcccEEEE--eccCCCCccEEEEEECCHHHHHHHHHHhCCc
Confidence            45789999998   444443          33333333332222111  1122355699999999999999999999999


Q ss_pred             eeeecCCceeeeccCCC
Q 017670          271 CLLLSNGRPLLGSIGTP  287 (368)
Q Consensus       271 cL~ls~GRPL~~S~g~~  287 (368)
                      -+   +||+|.+....+
T Consensus        81 ~~---~gr~i~v~~~~g   94 (99)
T d2dita1          81 WF---GGRQITAQAWDG   94 (99)
T ss_dssp             EE---TTEECEEEECCS
T ss_pred             EE---CCEEEEEEEeCC
Confidence            88   999999887543

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=7.9e-07  Score=68.74  Aligned_cols=44  Identities=16%  Similarity=0.140  Sum_probs=38.6

Q ss_pred             cccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeeccCC
Q 017670          240 VAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSIGT  286 (368)
Q Consensus       240 ~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S~g~  286 (368)
                      ....+...|.|||.|.+.++|..|+..||+.-+   +||+|.++...
T Consensus        51 ~~~~~~~~g~vfV~f~~~e~A~~A~~~l~Gr~f---~gR~v~v~f~~   94 (104)
T d1o0pa_          51 DGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF---ANRVVVTKYCD   94 (104)
T ss_dssp             TSSSCTTCCEEEEEESCHHHHHHHHHHHSSCCS---SSSCCEEEEEC
T ss_pred             CCCccCCceEEEEEECCHHHHHHHHHHHCCCEE---CCeEEEEEEcC
Confidence            345556779999999999999999999999988   99999988754

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=5.2e-06  Score=64.14  Aligned_cols=65  Identities=15%  Similarity=0.087  Sum_probs=52.8

Q ss_pred             HhcccEEEEec--CCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhcccee
Q 017670          200 HEHGTLVVLEN--LDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL  272 (368)
Q Consensus       200 ~E~GtlV~LqN--LDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL  272 (368)
                      -+-.+.++|.|  |++++|.+|++++|..-|.... .+++       +.-|.|||.|.+.++|..|+..||+.-|
T Consensus        15 ~~pt~~l~V~ng~L~~~vte~~L~~~F~~~G~i~~-i~~~-------~~k~~aFV~f~~~e~A~~A~~~lng~~i   81 (101)
T d2cq2a1          15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDA-LLMP-------PNKPYSFARYRTTEESKRAYVTLNGKEV   81 (101)
T ss_dssp             SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEE-EECC-------TTCSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred             CCCCceEEEECCCCCCCCCHHHHHHHHHhhCcccE-Eeec-------cCccEEEEEECCHHHHHHHHHHhCCCCC
Confidence            34456788876  9999999999999999776543 3333       3457899999999999999999998766

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=2e-05  Score=63.11  Aligned_cols=96  Identities=15%  Similarity=0.089  Sum_probs=66.4

Q ss_pred             cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670          202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL  281 (368)
Q Consensus       202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~  281 (368)
                      +-|.|||.||.+.+|.+||+++|.+.+.- -..+++ ......++.|.|||-|.+.+.|..|+..++ ..+   +++++.
T Consensus         5 ~~r~lfV~nLp~~~te~~L~~~F~~~G~v-~~~~~~-~~~~~~~~~g~afv~f~~~~~a~~a~~~~~-~~~---~~~~~~   78 (183)
T d1u1qa_           5 QLRKLFIGGLSFETTDESLRSHFEQWGTL-TDCVVM-RDPNTKRSRGFGFVTYATVEEVDAAMNARP-HKV---DGRVVE   78 (183)
T ss_dssp             HHHEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEE-ECTTTCCEEEEEEEEESSHHHHHHHHHTCS-CEE---TTEECE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHcCCE-EEEEee-ecccCCCccCceecccCCHHHHHHHHHhcC-Ccc---cccchh
Confidence            44789999999999999999999886642 233333 233456788999999999999999998654 334   677766


Q ss_pred             eccCCCCCCCC--------CCccccceehh
Q 017670          282 GSIGTPCFTGK--------QSKFVGHLALD  303 (368)
Q Consensus       282 ~S~g~~~~p~k--------~s~f~GHl~i~  303 (368)
                      .....+..+..        ..-|+|+|.-+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~V~~lp~~  108 (183)
T d1u1qa_          79 PKRAVSREDSQRPGAHLTVKKIFVGGIKED  108 (183)
T ss_dssp             EEECCCTTGGGSTTTTCCCSEEEEECCCTT
T ss_pred             hhhhhhcccccccccccccceeEEccCCCc
Confidence            55443332211        22367776543

>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=1.5e-05  Score=62.19  Aligned_cols=69  Identities=16%  Similarity=0.072  Sum_probs=54.1

Q ss_pred             cccEE-EEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEech-HHHHHHHHhhccceeeecCCce
Q 017670          202 HGTLV-VLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTR-EVAELVVTKLEEGCLLLSNGRP  279 (368)
Q Consensus       202 ~GtlV-~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~tr-eaAdsAi~Kln~~cL~ls~GRP  279 (368)
                      .|.++ |+.||+++.|.+||.++|.+.+. --.++++       ++-|.|||-|.++ ++|..|+..+|+.-|   .|+.
T Consensus         9 ~g~~~~fvgnL~~~~tee~Lk~~F~~fG~-V~~v~i~-------~~kg~gfV~F~~~~~~A~~a~~~~~~~~l---~~~~   77 (113)
T d1owxa_           9 IGCLLKFSGDLDDQTCREDLHILFSNHGE-IKWIDFV-------RGAKEGIILFKEKAKEALGKAKDANNGNL---QLRN   77 (113)
T ss_dssp             CCCEEEEEESCCSSCCHHHHHHHTCSSCC-EEEEECC-------TTCSEEEEEESSCHHHHHHHHHHTTTSCB---CTTS
T ss_pred             CCCeEEEECCCCCCCCHHHHHHHHHhcCC-hheEEEe-------cCCceEEEEecCcHHHHHHHHHHhcCCce---ecCc
Confidence            35555 88999999999999999988655 3445444       3468999999986 899999999999988   4454


Q ss_pred             ee
Q 017670          280 LL  281 (368)
Q Consensus       280 L~  281 (368)
                      +.
T Consensus        78 ~~   79 (113)
T d1owxa_          78 KE   79 (113)
T ss_dssp             SS
T ss_pred             eE
Confidence            44

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=6.8e-06  Score=63.91  Aligned_cols=73  Identities=18%  Similarity=0.254  Sum_probs=47.9

Q ss_pred             EEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeecc
Q 017670          206 VVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSI  284 (368)
Q Consensus       206 V~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S~  284 (368)
                      ++|+|+-..++.+++++++..-|+ --..+| ++. ..+..-|.|||.|.+.++|..||..||+.-+   +||||.+..
T Consensus        30 ~~v~~~~~~~~ed~l~e~f~k~G~-I~~v~I-~~~-~~~~~~G~~fV~f~~~~~A~~Ai~~lng~~~---~gr~i~v~~  102 (104)
T d1jmta_          30 VEMQEHYDEFFEEVFTEMEEKYGE-VEEMNV-CDN-LGDHLVGNVYVKFRREEDAEKAVIDLNNRWF---NGQPIHAEL  102 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCC-EEEEEE-CCS-SSSSSEEEEEEEESCHHHHHHHHHHHTTCEE---TTEECCEEE
T ss_pred             HHhhhhhhhhhHHHHHHHhccCCC-EEEEEe-ecC-CCCCEeeEEEEEEechhHHHHHHHHHCCCEE---CCEEEEEEE
Confidence            334444333333444444443333 223343 333 2456679999999999999999999999988   999998753

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleoporin 35
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.50  E-value=9.9e-05  Score=55.27  Aligned_cols=67  Identities=10%  Similarity=0.075  Sum_probs=50.5

Q ss_pred             ccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670          203 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG  282 (368)
Q Consensus       203 GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~  282 (368)
                      .+-|++.+|.|+.|++.+ ..|.+ +++-+..++       .++-|.|||-|.+++.|+.||+ +|...|   +||.|++
T Consensus         4 ~~wV~V~G~p~~~~~~il-~~F~~-~G~I~~~~~-------~~~~~~~fV~f~~~~~A~~Al~-~nG~~~---~g~~~vg   70 (81)
T d1wwha1           4 DTWVTVFGFPQASASYIL-LQFAQ-YGNILKHVM-------SNTGNWMHIRYQSKLQARKALS-KDGRIF---GESIMIG   70 (81)
T ss_dssp             GGEEEEECCCGGGHHHHH-HHHHT-TSCEEEEEE-------CSSSSEEEEEESSHHHHHHHHT-TTTCEE---TTTEECE
T ss_pred             ccEEEEECCChHHHHHHH-HHHHh-hhhhheEEe-------cCCCCEEEEEEcccHHHHHHHh-cCCCeE---CCcEEEE
Confidence            467999999988775433 45553 444555543       2446899999999999999995 899877   9999874

>d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Smg-4/UPF3
domain: RNA processing protein UPF3x, RRM domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.53  E-value=0.24  Score=38.16  Aligned_cols=65  Identities=15%  Similarity=0.262  Sum_probs=48.6

Q ss_pred             cEEEEecCCCCCCchHHHHHHHHHhhc----cceecccCCcccCCCCCceEEEEEechHHHHHHHHhhcccee
Q 017670          204 TLVVLENLDPSYTSTVVEDLVWHAFKE----NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL  272 (368)
Q Consensus       204 tlV~LqNLDps~ts~dVedLi~~a~ke----~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL  272 (368)
                      |.|.|.+|-|++|.++..+.+.-.++.    -|.++    .+....-+-+|++.|++.++......++++-..
T Consensus         2 tKvVvRrLPP~Lte~~F~~~l~~~~~~d~~~f~~Gk----~s~~~~~~SRAYi~F~~~~~v~~F~~~f~g~~F   70 (91)
T d1uw4a_           2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSND----TSLYPHMYARAYINFKNQEDIILFRDRFDGYVF   70 (91)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESC----CSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred             ceEEEecCCCCCCHHHHHHHhCCcCceEEEEEeCCC----cCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence            789999999999999999888543322    12222    223234556999999999999999999987654