Citrus Sinensis ID: 017683
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 368 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SBJ1 | 366 | [Pyruvate dehydrogenase ( | yes | no | 0.940 | 0.945 | 0.815 | 1e-171 | |
| P91622 | 413 | [Pyruvate dehydrogenase [ | yes | no | 0.855 | 0.762 | 0.414 | 6e-61 | |
| Q64536 | 407 | [Pyruvate dehydrogenase [ | yes | no | 0.839 | 0.759 | 0.422 | 3e-59 | |
| Q9JK42 | 407 | [Pyruvate dehydrogenase [ | yes | no | 0.839 | 0.759 | 0.416 | 4e-59 | |
| Q15119 | 407 | [Pyruvate dehydrogenase [ | yes | no | 0.839 | 0.759 | 0.410 | 5e-59 | |
| Q15120 | 406 | [Pyruvate dehydrogenase [ | no | no | 0.877 | 0.795 | 0.405 | 1e-58 | |
| Q922H2 | 415 | [Pyruvate dehydrogenase [ | no | no | 0.877 | 0.778 | 0.402 | 7e-58 | |
| Q16654 | 411 | [Pyruvate dehydrogenase [ | no | no | 0.875 | 0.783 | 0.389 | 9e-58 | |
| Q63065 | 434 | [Pyruvate dehydrogenase [ | no | no | 0.839 | 0.711 | 0.403 | 3e-57 | |
| Q8BFP9 | 434 | [Pyruvate dehydrogenase [ | no | no | 0.842 | 0.714 | 0.404 | 4e-57 |
| >sp|Q9SBJ1|PDK_ARATH [Pyruvate dehydrogenase (acetyl-transferring)] kinase, mitochondrial OS=Arabidopsis thaliana GN=PDK PE=1 SV=1 | Back alignment and function desciption |
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Score = 600 bits (1547), Expect = e-171, Method: Compositional matrix adjust.
Identities = 287/352 (81%), Positives = 322/352 (91%), Gaps = 6/352 (1%)
Query: 1 MAAKKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIR 60
MA KK E F KSLIE+V +WGCMKQTGVSLRYMMEFGSKPT++NLLISAQFLHKELPIR
Sbjct: 1 MAVKKACEMFPKSLIEDVHKWGCMKQTGVSLRYMMEFGSKPTERNLLISAQFLHKELPIR 60
Query: 61 IARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVR 120
+ARRAIEL+TLPYGLS+KPAVLKVRDWYL+SFRD+R+FP+I+ + DE+DFTQMIKA+KVR
Sbjct: 61 VARRAIELQTLPYGLSDKPAVLKVRDWYLESFRDMRAFPEIKDSGDEKDFTQMIKAVKVR 120
Query: 121 HNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNP 180
HNNVVPMMALG+ QLKK M+ +LDEIHQFLDRFY+SRIGIRMLIGQHVELHNPNP
Sbjct: 121 HNNVVPMMALGVNQLKKGMNSG----NLDEIHQFLDRFYLSRIGIRMLIGQHVELHNPNP 176
Query: 181 PPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMV 240
P H +GYI TKMSP++VARNASE AR +C REYGSAP+ NIYGDPSFTFPYVP+HLHLM+
Sbjct: 177 PLHTVGYIHTKMSPMEVARNASEDARSICFREYGSAPEINIYGDPSFTFPYVPTHLHLMM 236
Query: 241 FELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLY 300
+ELVKNSLRAV+ER++DSD+VAPPIRIIVADG+EDVTIKVSDEGGGI RSGLP+IFTYLY
Sbjct: 237 YELVKNSLRAVQERFVDSDRVAPPIRIIVADGIEDVTIKVSDEGGGIARSGLPRIFTYLY 296
Query: 301 STARNPLDENTDLA-AD-KGTMAGYGYGLPISRLYARYFGGDLQIISMEGYG 350
STARNPL+E+ DL AD TMAGYGYGLPISRLYARYFGGDLQIISMEGYG
Sbjct: 297 STARNPLEEDVDLGIADVPVTMAGYGYGLPISRLYARYFGGDLQIISMEGYG 348
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Serine protein kinase that inhibits the mitochondrial pyruvate dehydrogenase (PDH) complex (mtPDC) by phosphorylation of the E1 alpha subunit on Ser residues, thus contributing to the regulation of glucose metabolism. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 2 |
| >sp|P91622|PDK_DROME [Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Drosophila melanogaster GN=Pdk PE=2 SV=2 | Back alignment and function description |
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| >sp|Q64536|PDK2_RAT [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, mitochondrial OS=Rattus norvegicus GN=Pdk2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9JK42|PDK2_MOUSE [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, mitochondrial OS=Mus musculus GN=Pdk2 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q15119|PDK2_HUMAN [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, mitochondrial OS=Homo sapiens GN=PDK2 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q15120|PDK3_HUMAN [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 3, mitochondrial OS=Homo sapiens GN=PDK3 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q922H2|PDK3_MOUSE [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 3, mitochondrial OS=Mus musculus GN=Pdk3 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q16654|PDK4_HUMAN [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Homo sapiens GN=PDK4 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q63065|PDK1_RAT [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 1, mitochondrial OS=Rattus norvegicus GN=Pdk1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8BFP9|PDK1_MOUSE [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 1, mitochondrial OS=Mus musculus GN=Pdk1 PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 368 | ||||||
| 255556572 | 351 | pyruvate dehydrogenase, putative [Ricinu | 0.951 | 0.997 | 0.871 | 0.0 | |
| 356556464 | 369 | PREDICTED: Pyruvate dehydrogenase [lipoa | 0.951 | 0.948 | 0.877 | 0.0 | |
| 359807389 | 369 | Pyruvate dehydrogenase [lipoamide] kinas | 0.951 | 0.948 | 0.866 | 0.0 | |
| 255638678 | 369 | unknown [Glycine max] | 0.951 | 0.948 | 0.874 | 0.0 | |
| 157922335 | 369 | mitochondrial pyruvate dehydrogenase kin | 0.951 | 0.948 | 0.871 | 1e-180 | |
| 224106976 | 369 | predicted protein [Populus trichocarpa] | 0.951 | 0.948 | 0.854 | 1e-180 | |
| 388497260 | 369 | unknown [Lotus japonicus] | 0.951 | 0.948 | 0.851 | 1e-177 | |
| 225432171 | 369 | PREDICTED: [Pyruvate dehydrogenase [lipo | 0.951 | 0.948 | 0.843 | 1e-176 | |
| 449460345 | 370 | PREDICTED: Pyruvate dehydrogenase (acety | 0.951 | 0.945 | 0.846 | 1e-175 | |
| 449485034 | 370 | PREDICTED: Pyruvate dehydrogenase (acety | 0.951 | 0.945 | 0.843 | 1e-174 |
| >gi|255556572|ref|XP_002519320.1| pyruvate dehydrogenase, putative [Ricinus communis] gi|223541635|gb|EEF43184.1| pyruvate dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/351 (87%), Positives = 332/351 (94%), Gaps = 1/351 (0%)
Query: 1 MAAKKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIR 60
MAAKK E+ SKS I+EV RWGCMKQTGVSLRYMMEFGS+PT KNLLISAQFLHKELPIR
Sbjct: 1 MAAKKAFESLSKSFIQEVQRWGCMKQTGVSLRYMMEFGSRPTSKNLLISAQFLHKELPIR 60
Query: 61 IARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVR 120
IARR I+L++LPYGLS+KPAVLKVRDWYLDSFRDLRSFPDI+ ++DE+DFTQMIKAIKVR
Sbjct: 61 IARRVIDLQSLPYGLSDKPAVLKVRDWYLDSFRDLRSFPDIKDSNDEKDFTQMIKAIKVR 120
Query: 121 HNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNP 180
HNNVVPMMALG+QQLKK MDPKIVYEDLDEIH FLDRFYMSRIGIRMLIGQHVELHNPNP
Sbjct: 121 HNNVVPMMALGVQQLKKGMDPKIVYEDLDEIHNFLDRFYMSRIGIRMLIGQHVELHNPNP 180
Query: 181 PPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMV 240
PPHCIGYI TKMSPV+VARNA+E AR +CLREYGSAP+ +IYGDPSFTFPYVP+HLHLMV
Sbjct: 181 PPHCIGYIHTKMSPVEVARNATEDARAICLREYGSAPNVSIYGDPSFTFPYVPAHLHLMV 240
Query: 241 FELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLY 300
FELVKNSLRAV+ERYMDSDKVAPP+R+IVA+G+EDVTIKVSDEGGGIPRSGLPKIFTYLY
Sbjct: 241 FELVKNSLRAVQERYMDSDKVAPPVRLIVAEGIEDVTIKVSDEGGGIPRSGLPKIFTYLY 300
Query: 301 STARNPLDENTDLA-ADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYG 350
STA+NPLDE+ DL AD TMAGYGYGLPISRLYARYFGGDLQ+ISMEGYG
Sbjct: 301 STAKNPLDEHADLGTADTVTMAGYGYGLPISRLYARYFGGDLQVISMEGYG 351
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356556464|ref|XP_003546545.1| PREDICTED: Pyruvate dehydrogenase [lipoamide] kinase-like [Glycine max] gi|46850513|gb|AAT02656.1| mitochondrial pyruvate dehydrogenase kinase isoform 2 [Glycine max] | Back alignment and taxonomy information |
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| >gi|359807389|ref|NP_001241640.1| Pyruvate dehydrogenase [lipoamide] kinase-like [Glycine max] gi|46850511|gb|AAT02655.1| mitochondrial pyruvate dehydrogenase kinase isoform 1 [Glycine max] gi|157922331|gb|ABW03158.1| mitochondrial pyruvate dehydrogenase kinase isoform 1 [Pisum sativum] gi|157922333|gb|ABW03159.1| mitochondrial pyruvate dehydrogenase kinase isoform 1 [Pisum sativum] gi|157922339|gb|ABW03162.1| mitochondrial pyruvate dehydrogenase kinase isoform 1 [Cicer arietinum] gi|255639356|gb|ACU19974.1| unknown [Glycine max] | Back alignment and taxonomy information |
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| >gi|255638678|gb|ACU19644.1| unknown [Glycine max] | Back alignment and taxonomy information |
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| >gi|157922335|gb|ABW03160.1| mitochondrial pyruvate dehydrogenase kinase isoform 2 [Pisum sativum] | Back alignment and taxonomy information |
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| >gi|224106976|ref|XP_002314330.1| predicted protein [Populus trichocarpa] gi|222863370|gb|EEF00501.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|388497260|gb|AFK36696.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
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| >gi|225432171|ref|XP_002267959.1| PREDICTED: [Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial [Vitis vinifera] gi|297736808|emb|CBI26009.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449460345|ref|XP_004147906.1| PREDICTED: Pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449485034|ref|XP_004157053.1| PREDICTED: Pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 368 | ||||||
| TAIR|locus:2081031 | 366 | PDK "AT3G06483" [Arabidopsis t | 0.940 | 0.945 | 0.815 | 2.7e-155 | |
| ASPGD|ASPL0000007784 | 405 | AN6207 [Emericella nidulans (t | 0.720 | 0.654 | 0.482 | 2.5e-75 | |
| CGD|CAL0003985 | 511 | PDK2 [Candida albicans (taxid: | 0.252 | 0.181 | 0.621 | 1.3e-69 | |
| UNIPROTKB|Q5A426 | 511 | CaO19.7281 "Potential histidin | 0.252 | 0.181 | 0.621 | 1.3e-69 | |
| POMBASE|SPAC644.11c | 425 | pkp1 "mitochondrial pyruvate d | 0.641 | 0.555 | 0.475 | 1.4e-64 | |
| ZFIN|ZDB-GENE-091204-402 | 405 | pdk1 "pyruvate dehydrogenase k | 0.907 | 0.824 | 0.417 | 3.8e-62 | |
| FB|FBgn0017558 | 413 | Pdk "Pyruvate dehydrogenase ki | 0.855 | 0.762 | 0.414 | 1.2e-58 | |
| UNIPROTKB|F1NLP2 | 408 | PDK1 "Uncharacterized protein" | 0.880 | 0.794 | 0.409 | 2.2e-57 | |
| RGD|69428 | 407 | Pdk2 "pyruvate dehydrogenase k | 0.839 | 0.759 | 0.425 | 2.2e-57 | |
| UNIPROTKB|F1LMM8 | 407 | Pdk2 "[Pyruvate dehydrogenase | 0.839 | 0.759 | 0.422 | 4.6e-57 |
| TAIR|locus:2081031 PDK "AT3G06483" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1514 (538.0 bits), Expect = 2.7e-155, P = 2.7e-155
Identities = 287/352 (81%), Positives = 322/352 (91%)
Query: 1 MAAKKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIR 60
MA KK E F KSLIE+V +WGCMKQTGVSLRYMMEFGSKPT++NLLISAQFLHKELPIR
Sbjct: 1 MAVKKACEMFPKSLIEDVHKWGCMKQTGVSLRYMMEFGSKPTERNLLISAQFLHKELPIR 60
Query: 61 IARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVR 120
+ARRAIEL+TLPYGLS+KPAVLKVRDWYL+SFRD+R+FP+I+ + DE+DFTQMIKA+KVR
Sbjct: 61 VARRAIELQTLPYGLSDKPAVLKVRDWYLESFRDMRAFPEIKDSGDEKDFTQMIKAVKVR 120
Query: 121 HNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNP 180
HNNVVPMMALG+ QLKK M+ +LDEIHQFLDRFY+SRIGIRMLIGQHVELHNPNP
Sbjct: 121 HNNVVPMMALGVNQLKKGMNSG----NLDEIHQFLDRFYLSRIGIRMLIGQHVELHNPNP 176
Query: 181 PPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMV 240
P H +GYI TKMSP++VARNASE AR +C REYGSAP+ NIYGDPSFTFPYVP+HLHLM+
Sbjct: 177 PLHTVGYIHTKMSPMEVARNASEDARSICFREYGSAPEINIYGDPSFTFPYVPTHLHLMM 236
Query: 241 FELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLY 300
+ELVKNSLRAV+ER++DSD+VAPPIRIIVADG+EDVTIKVSDEGGGI RSGLP+IFTYLY
Sbjct: 237 YELVKNSLRAVQERFVDSDRVAPPIRIIVADGIEDVTIKVSDEGGGIARSGLPRIFTYLY 296
Query: 301 STARNPLDENTDLA-ADKG-TMAGYGYGLPISRLYARYFGGDLQIISMEGYG 350
STARNPL+E+ DL AD TMAGYGYGLPISRLYARYFGGDLQIISMEGYG
Sbjct: 297 STARNPLEEDVDLGIADVPVTMAGYGYGLPISRLYARYFGGDLQIISMEGYG 348
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| ASPGD|ASPL0000007784 AN6207 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
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| CGD|CAL0003985 PDK2 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q5A426 CaO19.7281 "Potential histidine kinase-like ATPase" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
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| POMBASE|SPAC644.11c pkp1 "mitochondrial pyruvate dehydrogenase (lipoamide) kinase Pkp1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-091204-402 pdk1 "pyruvate dehydrogenase kinase, isozyme 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| FB|FBgn0017558 Pdk "Pyruvate dehydrogenase kinase" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NLP2 PDK1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| RGD|69428 Pdk2 "pyruvate dehydrogenase kinase, isozyme 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1LMM8 Pdk2 "[Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, mitochondrial" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SBJ1 | PDK_ARATH | 2, ., 7, ., 1, 1, ., 2 | 0.8153 | 0.9402 | 0.9453 | yes | no |
| Q02332 | PDHK2_CAEEL | 2, ., 7, ., 1, 1, ., 2 | 0.3760 | 0.9103 | 0.8354 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 2.7.11.2 | 0.824 |
| 3rd Layer | 2.7.13.3 | 0.737 |
| 3rd Layer | 2.7.11 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh4_pm.C_LG_X000013 | SubName- Full=Putative uncharacterized protein; (369 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 368 | |||
| pfam10436 | 163 | pfam10436, BCDHK_Adom3, Mitochondrial branched-cha | 1e-74 | |
| pfam02518 | 111 | pfam02518, HATPase_c, Histidine kinase-, DNA gyras | 2e-17 | |
| smart00387 | 111 | smart00387, HATPase_c, Histidine kinase-like ATPas | 4e-17 | |
| cd00075 | 103 | cd00075, HATPase_c, Histidine kinase-like ATPases; | 1e-16 | |
| COG0642 | 336 | COG0642, BaeS, Signal transduction histidine kinas | 4e-10 | |
| COG4191 | 603 | COG4191, COG4191, Signal transduction histidine ki | 1e-05 | |
| PRK11100 | 475 | PRK11100, PRK11100, sensory histidine kinase CreC; | 3e-05 | |
| PRK11091 | 779 | PRK11091, PRK11091, aerobic respiration control se | 7e-05 | |
| PRK11360 | 607 | PRK11360, PRK11360, sensory histidine kinase AtoS; | 2e-04 | |
| COG5002 | 459 | COG5002, VicK, Signal transduction histidine kinas | 2e-04 | |
| COG2205 | 890 | COG2205, KdpD, Osmosensitive K+ channel histidine | 3e-04 | |
| COG1389 | 538 | COG1389, COG1389, DNA topoisomerase VI, subunit B | 5e-04 | |
| PRK04184 | 535 | PRK04184, PRK04184, DNA topoisomerase VI subunit B | 0.001 |
| >gnl|CDD|220754 pfam10436, BCDHK_Adom3, Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase | Back alignment and domain information |
|---|
Score = 228 bits (583), Expect = 1e-74
Identities = 84/168 (50%), Positives = 111/168 (66%), Gaps = 9/168 (5%)
Query: 27 TGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRD 86
T +SLR +++FG PT+K LL SAQFL +ELP+R+A R EL+ LPYGL P++L+V +
Sbjct: 1 TPLSLRQLLQFGRNPTEKTLLKSAQFLREELPVRLAHRIRELQLLPYGLVANPSILQVYE 60
Query: 87 WYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYE 146
WYL SF +LRSFP ++ D F +++ I RHNNVVP +A G+ +LK +DP
Sbjct: 61 WYLQSFEELRSFPPPKTLEDNEKFCDLLRDILDRHNNVVPTLAQGVLELKDLLDP----V 116
Query: 147 DLDEIHQFLDRFYMSRIGIRMLIGQHVEL----HNPNPPPHCIGYIDT 190
DEI FLDRF SRIGIRML QH+ L H+P P + +G IDT
Sbjct: 117 PEDEIQYFLDRFLRSRIGIRMLAEQHLALTENTHSPKHPDY-VGIIDT 163
|
Catabolism and synthesis of leucine, isoleucine and valine are finely balanced, allowing the body to make the most of dietary input but removing excesses to prevent toxic build-up of their corresponding keto-acids. This is the butyryl-CoA dehydrogenase, subunit A domain 3, a largely alpha-helical bundle of the enzyme BCDHK. This enzyme is the regulator of the dehydrogenase complex that breaks branched-chain amino-acids down, by phosphorylating and thereby inactivating it when synthesis is required. The domain is associated with family HATPase_c pfam02518 which is towards the C-terminal. Length = 163 |
| >gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | Back alignment and domain information |
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| >gnl|CDD|214643 smart00387, HATPase_c, Histidine kinase-like ATPases | Back alignment and domain information |
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| >gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
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| >gnl|CDD|223715 COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
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| >gnl|CDD|226654 COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] | Back alignment and domain information |
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| >gnl|CDD|236846 PRK11100, PRK11100, sensory histidine kinase CreC; Provisional | Back alignment and domain information |
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| >gnl|CDD|236842 PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional | Back alignment and domain information |
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| >gnl|CDD|236901 PRK11360, PRK11360, sensory histidine kinase AtoS; Provisional | Back alignment and domain information |
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| >gnl|CDD|227335 COG5002, VicK, Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
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| >gnl|CDD|225115 COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
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| >gnl|CDD|224307 COG1389, COG1389, DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] | Back alignment and domain information |
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| >gnl|CDD|235246 PRK04184, PRK04184, DNA topoisomerase VI subunit B; Validated | Back alignment and domain information |
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Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 368 | |||
| KOG0787 | 414 | consensus Dehydrogenase kinase [Signal transductio | 100.0 | |
| COG5002 | 459 | VicK Signal transduction histidine kinase [Signal | 100.0 | |
| COG2205 | 890 | KdpD Osmosensitive K+ channel histidine kinase [Si | 100.0 | |
| COG4191 | 603 | Signal transduction histidine kinase regulating C4 | 100.0 | |
| PRK09303 | 380 | adaptive-response sensory kinase; Validated | 100.0 | |
| PRK10618 | 894 | phosphotransfer intermediate protein in two-compon | 100.0 | |
| PRK11006 | 430 | phoR phosphate regulon sensor protein; Provisional | 99.98 | |
| PRK15347 | 921 | two component system sensor kinase SsrA; Provision | 99.97 | |
| PRK10815 | 485 | sensor protein PhoQ; Provisional | 99.97 | |
| PRK10841 | 924 | hybrid sensory kinase in two-component regulatory | 99.97 | |
| TIGR02956 | 968 | TMAO_torS TMAO reductase sytem sensor TorS. This p | 99.97 | |
| PRK11091 | 779 | aerobic respiration control sensor protein ArcB; P | 99.97 | |
| PRK11107 | 919 | hybrid sensory histidine kinase BarA; Provisional | 99.97 | |
| PRK11466 | 914 | hybrid sensory histidine kinase TorS; Provisional | 99.97 | |
| PRK10604 | 433 | sensor protein RstB; Provisional | 99.97 | |
| PRK10549 | 466 | signal transduction histidine-protein kinase BaeS; | 99.97 | |
| TIGR02938 | 494 | nifL_nitrog nitrogen fixation negative regulator N | 99.97 | |
| COG3852 | 363 | NtrB Signal transduction histidine kinase, nitroge | 99.97 | |
| PRK10490 | 895 | sensor protein KdpD; Provisional | 99.97 | |
| PRK10364 | 457 | sensor protein ZraS; Provisional | 99.97 | |
| PRK10755 | 356 | sensor protein BasS/PmrB; Provisional | 99.96 | |
| PRK13837 | 828 | two-component VirA-like sensor kinase; Provisional | 99.96 | |
| TIGR03785 | 703 | marine_sort_HK proteobacterial dedicated sortase s | 99.96 | |
| TIGR01386 | 457 | cztS_silS_copS heavy metal sensor kinase. Members | 99.96 | |
| COG5000 | 712 | NtrY Signal transduction histidine kinase involved | 99.96 | |
| COG4251 | 750 | Bacteriophytochrome (light-regulated signal transd | 99.96 | |
| PRK09835 | 482 | sensor kinase CusS; Provisional | 99.96 | |
| PRK11100 | 475 | sensory histidine kinase CreC; Provisional | 99.96 | |
| TIGR02916 | 679 | PEP_his_kin putative PEP-CTERM system histidine ki | 99.95 | |
| TIGR02966 | 333 | phoR_proteo phosphate regulon sensor kinase PhoR. | 99.95 | |
| PRK10337 | 449 | sensor protein QseC; Provisional | 99.95 | |
| PRK09959 | 1197 | hybrid sensory histidine kinase in two-component r | 99.95 | |
| PRK09470 | 461 | cpxA two-component sensor protein; Provisional | 99.95 | |
| PRK11073 | 348 | glnL nitrogen regulation protein NR(II); Provision | 99.95 | |
| PRK09467 | 435 | envZ osmolarity sensor protein; Provisional | 99.95 | |
| PRK11360 | 607 | sensory histidine kinase AtoS; Provisional | 99.94 | |
| PRK13557 | 540 | histidine kinase; Provisional | 99.93 | |
| COG0642 | 336 | BaeS Signal transduction histidine kinase [Signal | 99.93 | |
| COG4192 | 673 | Signal transduction histidine kinase regulating ph | 99.91 | |
| PRK11086 | 542 | sensory histidine kinase DcuS; Provisional | 99.9 | |
| PRK15053 | 545 | dpiB sensor histidine kinase DpiB; Provisional | 99.9 | |
| PF02518 | 111 | HATPase_c: Histidine kinase-, DNA gyrase B-, and H | 99.89 | |
| PRK13560 | 807 | hypothetical protein; Provisional | 99.89 | |
| PF10436 | 164 | BCDHK_Adom3: Mitochondrial branched-chain alpha-ke | 99.87 | |
| COG3290 | 537 | CitA Signal transduction histidine kinase regulati | 99.87 | |
| PRK11644 | 495 | sensory histidine kinase UhpB; Provisional | 99.86 | |
| PRK13559 | 361 | hypothetical protein; Provisional | 99.81 | |
| PRK10547 | 670 | chemotaxis protein CheA; Provisional | 99.79 | |
| PRK10600 | 569 | nitrate/nitrite sensor protein NarX; Provisional | 99.79 | |
| PRK10935 | 565 | nitrate/nitrite sensor protein NarQ; Provisional | 99.78 | |
| COG0643 | 716 | CheA Chemotaxis protein histidine kinase and relat | 99.69 | |
| smart00387 | 111 | HATPase_c Histidine kinase-like ATPases. Histidine | 99.62 | |
| PRK04184 | 535 | DNA topoisomerase VI subunit B; Validated | 99.62 | |
| COG4585 | 365 | Signal transduction histidine kinase [Signal trans | 99.51 | |
| TIGR01925 | 137 | spIIAB anti-sigma F factor. This model describes t | 99.51 | |
| COG3850 | 574 | NarQ Signal transduction histidine kinase, nitrate | 99.5 | |
| cd00075 | 103 | HATPase_c Histidine kinase-like ATPases; This fami | 99.49 | |
| COG3920 | 221 | Signal transduction histidine kinase [Signal trans | 99.48 | |
| PRK03660 | 146 | anti-sigma F factor; Provisional | 99.47 | |
| TIGR01052 | 488 | top6b DNA topoisomerase VI, B subunit. This model | 99.45 | |
| PRK14868 | 795 | DNA topoisomerase VI subunit B; Provisional | 99.43 | |
| PRK14867 | 659 | DNA topoisomerase VI subunit B; Provisional | 99.43 | |
| PRK04069 | 161 | serine-protein kinase RsbW; Provisional | 99.27 | |
| COG3851 | 497 | UhpB Signal transduction histidine kinase, glucose | 99.25 | |
| COG3275 | 557 | LytS Putative regulator of cell autolysis [Signal | 99.2 | |
| PF14501 | 100 | HATPase_c_5: GHKL domain | 99.18 | |
| TIGR01924 | 159 | rsbW_low_gc serine-protein kinase RsbW. This model | 99.12 | |
| COG2972 | 456 | Predicted signal transduction protein with a C-ter | 99.06 | |
| COG4564 | 459 | Signal transduction histidine kinase [Signal trans | 98.92 | |
| PF13581 | 125 | HATPase_c_2: Histidine kinase-like ATPase domain | 98.71 | |
| COG1389 | 538 | DNA topoisomerase VI, subunit B [DNA replication, | 98.67 | |
| TIGR00585 | 312 | mutl DNA mismatch repair protein MutL. All protein | 98.49 | |
| COG2172 | 146 | RsbW Anti-sigma regulatory factor (Ser/Thr protein | 98.47 | |
| KOG0519 | 786 | consensus Sensory transduction histidine kinase [S | 98.47 | |
| PF13589 | 137 | HATPase_c_3: Histidine kinase-, DNA gyrase B-, and | 98.1 | |
| PRK00095 | 617 | mutL DNA mismatch repair protein; Reviewed | 97.88 | |
| PRK05559 | 631 | DNA topoisomerase IV subunit B; Reviewed | 97.65 | |
| PF00512 | 68 | HisKA: His Kinase A (phospho-acceptor) domain; Int | 97.6 | |
| PRK05218 | 613 | heat shock protein 90; Provisional | 97.23 | |
| PTZ00272 | 701 | heat shock protein 83 kDa (Hsp83); Provisional | 97.1 | |
| COG0323 | 638 | MutL DNA mismatch repair enzyme (predicted ATPase) | 97.04 | |
| PRK05644 | 638 | gyrB DNA gyrase subunit B; Validated | 96.82 | |
| smart00433 | 594 | TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras | 96.77 | |
| PTZ00130 | 814 | heat shock protein 90; Provisional | 96.73 | |
| PRK14083 | 601 | HSP90 family protein; Provisional | 96.69 | |
| TIGR01055 | 625 | parE_Gneg DNA topoisomerase IV, B subunit, proteob | 96.61 | |
| TIGR01059 | 654 | gyrB DNA gyrase, B subunit. This model describes t | 96.6 | |
| cd00082 | 65 | HisKA Histidine Kinase A (dimerization/phosphoacce | 96.27 | |
| PRK14939 | 756 | gyrB DNA gyrase subunit B; Provisional | 96.03 | |
| smart00388 | 66 | HisKA His Kinase A (phosphoacceptor) domain. Dimer | 95.57 | |
| COG0326 | 623 | HtpG Molecular chaperone, HSP90 family [Posttransl | 95.3 | |
| TIGR01058 | 637 | parE_Gpos DNA topoisomerase IV, B subunit, Gram-po | 94.29 | |
| PF10090 | 182 | DUF2328: Uncharacterized protein conserved in bact | 94.12 | |
| COG5381 | 184 | Uncharacterized protein conserved in bacteria [Fun | 94.04 | |
| KOG1979 | 694 | consensus DNA mismatch repair protein - MLH1 famil | 93.37 | |
| PTZ00108 | 1388 | DNA topoisomerase 2-like protein; Provisional | 93.16 | |
| KOG1978 | 672 | consensus DNA mismatch repair protein - MLH2/PMS1/ | 92.89 | |
| PHA02569 | 602 | 39 DNA topoisomerase II large subunit; Provisional | 92.7 | |
| COG5385 | 214 | Uncharacterized protein conserved in bacteria [Fun | 92.64 | |
| COG0187 | 635 | GyrB Type IIA topoisomerase (DNA gyrase/topo II, t | 92.19 | |
| PLN03128 | 1135 | DNA topoisomerase 2; Provisional | 91.98 | |
| PLN03237 | 1465 | DNA topoisomerase 2; Provisional | 91.27 | |
| KOG1977 | 1142 | consensus DNA mismatch repair protein - MLH3 famil | 90.62 | |
| PTZ00109 | 903 | DNA gyrase subunit b; Provisional | 90.01 |
| >KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-45 Score=323.61 Aligned_cols=343 Identities=42% Similarity=0.739 Sum_probs=309.5
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHhcCCCCChHHHHHHHHHHHHHhHHHHHHHHHHHhcCCccccCChhHHHHHHHHHHH
Q 017683 12 KSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDS 91 (368)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~l~~rv~~r~~~l~~~~~~l~~~~~i~~~~~~~~~~ 91 (368)
..+.+.|..|+.+++.|+++.|+++|+.+++......+..+++++|+.|+|+|+++++.+|+.+..+|++..+..||.++
T Consensus 36 ~~~~~~i~~~s~f~pspls~kq~l~fg~~~t~~~e~~S~~flr~ELpvRlA~~lkeiq~LP~nl~~npsi~~V~s~Y~~s 115 (414)
T KOG0787|consen 36 PSLPEYINPYSSFPPSPLSLKQFLDFGSDLTNACEKTSGIFLRQELPVRLANRLKEIQLLPFNLVNNPSIQLVQSWYIRS 115 (414)
T ss_pred cchHHHhchhhcCCCCcccHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhccCchHHHHHHHHHHH
Confidence 35889999999999999999999999998888888889999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCC-chhHHHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHH
Q 017683 92 FRDLRSFPDIRS-TSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIG 170 (368)
Q Consensus 92 ~~~l~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~ 170 (368)
|+++..++.... .++..+|.+.+..+..++...+..|+.|+.|++..... ......++.+||+.+++++++|+|++
T Consensus 116 fe~ll~~~~~~~~~~~~~qf~d~l~~l~~rH~dvv~~lA~Gl~E~~~~~~d---p~~~~~iqyFLdr~y~sRIsiRMLv~ 192 (414)
T KOG0787|consen 116 FEDLLEFPTISPDLEDLSQFNDLLNTLRNRHNDVVPTLAQGLIEYREKDGD---PVTEKNIQYFLDRFYMSRISIRMLVN 192 (414)
T ss_pred HHHHHccCCCCcchhhHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhcCC---cchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999988877 88889999999999999999999999999999875541 01256899999999999999999999
Q ss_pred HHhhhcC--CCCCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCceee-ecchhHHHHHHHHHHHH
Q 017683 171 QHVELHN--PNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFP-YVPSHLHLMVFELVKNS 247 (368)
Q Consensus 171 ~ll~l~~--~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~d~~~l~~vl~NLl~NA 247 (368)
+++.+.. ......++|.....|++.++|+++.+.++.+|..+|...+++.+.++....+. +.|.+|..++.+|++||
T Consensus 193 qh~~l~~~~kp~~~~~iG~I~~~c~v~~vi~~a~e~ar~lCd~yy~~sPel~i~~~~a~~~~vyvPshL~ymlfElfKNa 272 (414)
T KOG0787|consen 193 QHLLLFASGKPDHPRHIGIIDPRCSVKKVIKDASENARFLCDQYYLNSPELIIEGHNALSFTVYVPSHLYYMLFELFKNA 272 (414)
T ss_pred hhhheecCCCCCCcceeeeeCCCCCHHHHHHHHHHHHHHHHHHhccCCCeeEecCcccccCccccchHHHHHHHHHHHHH
Confidence 9999866 23344689999999999999999999999999999999999999988888877 79999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCH
Q 017683 248 LRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGL 327 (368)
Q Consensus 248 i~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL 327 (368)
.+|+-+.|......-++|.|.+..+++.+.|.|+|.|.||+.+..+++|+..|+|.+.+.... .+.....|.|.||
T Consensus 273 mrATve~h~~~~~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d~----~~~~plaGfG~GL 348 (414)
T KOG0787|consen 273 MRATVEHHGDDGDELPPIKVTVAKGDEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSDN----NRTAPLAGFGFGL 348 (414)
T ss_pred HHHHHHHhccCCCCCCCeEEEEecCCcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCCC----CCcCcccccccCC
Confidence 999999776665547789999999999999999999999999999999999999987633111 1245678999999
Q ss_pred HHHHHHHHHhCCeEEEEecCCCeeEEEEEEeccc
Q 017683 328 PISRLYARYFGGDLQIISMEGYGELNMFSVLLYS 361 (368)
Q Consensus 328 ~i~k~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 361 (368)
+|+|.+++++||++.+.|.+|.||+++|+|...+
T Consensus 349 PisrlYa~yf~Gdl~L~SleG~GTD~yI~Lk~ls 382 (414)
T KOG0787|consen 349 PISRLYARYFGGDLKLQSLEGIGTDVYIYLKALS 382 (414)
T ss_pred cHHHHHHHHhCCCeeEEeeeccccceEEEeccCC
Confidence 9999999999999999999999999999997654
|
|
| >COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK09303 adaptive-response sensory kinase; Validated | Back alignment and domain information |
|---|
| >PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional | Back alignment and domain information |
|---|
| >PRK11006 phoR phosphate regulon sensor protein; Provisional | Back alignment and domain information |
|---|
| >PRK15347 two component system sensor kinase SsrA; Provisional | Back alignment and domain information |
|---|
| >PRK10815 sensor protein PhoQ; Provisional | Back alignment and domain information |
|---|
| >PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional | Back alignment and domain information |
|---|
| >TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS | Back alignment and domain information |
|---|
| >PRK11091 aerobic respiration control sensor protein ArcB; Provisional | Back alignment and domain information |
|---|
| >PRK11107 hybrid sensory histidine kinase BarA; Provisional | Back alignment and domain information |
|---|
| >PRK11466 hybrid sensory histidine kinase TorS; Provisional | Back alignment and domain information |
|---|
| >PRK10604 sensor protein RstB; Provisional | Back alignment and domain information |
|---|
| >PRK10549 signal transduction histidine-protein kinase BaeS; Provisional | Back alignment and domain information |
|---|
| >TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL | Back alignment and domain information |
|---|
| >COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10490 sensor protein KdpD; Provisional | Back alignment and domain information |
|---|
| >PRK10364 sensor protein ZraS; Provisional | Back alignment and domain information |
|---|
| >PRK10755 sensor protein BasS/PmrB; Provisional | Back alignment and domain information |
|---|
| >PRK13837 two-component VirA-like sensor kinase; Provisional | Back alignment and domain information |
|---|
| >TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase | Back alignment and domain information |
|---|
| >TIGR01386 cztS_silS_copS heavy metal sensor kinase | Back alignment and domain information |
|---|
| >COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK09835 sensor kinase CusS; Provisional | Back alignment and domain information |
|---|
| >PRK11100 sensory histidine kinase CreC; Provisional | Back alignment and domain information |
|---|
| >TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase | Back alignment and domain information |
|---|
| >TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR | Back alignment and domain information |
|---|
| >PRK10337 sensor protein QseC; Provisional | Back alignment and domain information |
|---|
| >PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional | Back alignment and domain information |
|---|
| >PRK09470 cpxA two-component sensor protein; Provisional | Back alignment and domain information |
|---|
| >PRK11073 glnL nitrogen regulation protein NR(II); Provisional | Back alignment and domain information |
|---|
| >PRK09467 envZ osmolarity sensor protein; Provisional | Back alignment and domain information |
|---|
| >PRK11360 sensory histidine kinase AtoS; Provisional | Back alignment and domain information |
|---|
| >PRK13557 histidine kinase; Provisional | Back alignment and domain information |
|---|
| >COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK11086 sensory histidine kinase DcuS; Provisional | Back alignment and domain information |
|---|
| >PRK15053 dpiB sensor histidine kinase DpiB; Provisional | Back alignment and domain information |
|---|
| >PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
| >PRK13560 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PF10436 BCDHK_Adom3: Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase; InterPro: IPR018955 Catabolism and synthesis of leucine, isoleucine and valine are finely balanced, allowing the body to make the most of dietary input but removing excesses to prevent toxic build-up of their corresponding keto-acids | Back alignment and domain information |
|---|
| >COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK11644 sensory histidine kinase UhpB; Provisional | Back alignment and domain information |
|---|
| >PRK13559 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK10547 chemotaxis protein CheA; Provisional | Back alignment and domain information |
|---|
| >PRK10600 nitrate/nitrite sensor protein NarX; Provisional | Back alignment and domain information |
|---|
| >PRK10935 nitrate/nitrite sensor protein NarQ; Provisional | Back alignment and domain information |
|---|
| >COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >smart00387 HATPase_c Histidine kinase-like ATPases | Back alignment and domain information |
|---|
| >PRK04184 DNA topoisomerase VI subunit B; Validated | Back alignment and domain information |
|---|
| >COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR01925 spIIAB anti-sigma F factor | Back alignment and domain information |
|---|
| >COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
| >COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK03660 anti-sigma F factor; Provisional | Back alignment and domain information |
|---|
| >TIGR01052 top6b DNA topoisomerase VI, B subunit | Back alignment and domain information |
|---|
| >PRK14868 DNA topoisomerase VI subunit B; Provisional | Back alignment and domain information |
|---|
| >PRK14867 DNA topoisomerase VI subunit B; Provisional | Back alignment and domain information |
|---|
| >PRK04069 serine-protein kinase RsbW; Provisional | Back alignment and domain information |
|---|
| >COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF14501 HATPase_c_5: GHKL domain | Back alignment and domain information |
|---|
| >TIGR01924 rsbW_low_gc serine-protein kinase RsbW | Back alignment and domain information |
|---|
| >COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG4564 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF13581 HATPase_c_2: Histidine kinase-like ATPase domain | Back alignment and domain information |
|---|
| >COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR00585 mutl DNA mismatch repair protein MutL | Back alignment and domain information |
|---|
| >COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B | Back alignment and domain information |
|---|
| >PRK00095 mutL DNA mismatch repair protein; Reviewed | Back alignment and domain information |
|---|
| >PRK05559 DNA topoisomerase IV subunit B; Reviewed | Back alignment and domain information |
|---|
| >PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] | Back alignment and domain information |
|---|
| >PRK05218 heat shock protein 90; Provisional | Back alignment and domain information |
|---|
| >PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional | Back alignment and domain information |
|---|
| >COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK05644 gyrB DNA gyrase subunit B; Validated | Back alignment and domain information |
|---|
| >smart00433 TOP2c TopoisomeraseII | Back alignment and domain information |
|---|
| >PTZ00130 heat shock protein 90; Provisional | Back alignment and domain information |
|---|
| >PRK14083 HSP90 family protein; Provisional | Back alignment and domain information |
|---|
| >TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial | Back alignment and domain information |
|---|
| >TIGR01059 gyrB DNA gyrase, B subunit | Back alignment and domain information |
|---|
| >cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase | Back alignment and domain information |
|---|
| >PRK14939 gyrB DNA gyrase subunit B; Provisional | Back alignment and domain information |
|---|
| >smart00388 HisKA His Kinase A (phosphoacceptor) domain | Back alignment and domain information |
|---|
| >COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive | Back alignment and domain information |
|---|
| >PF10090 DUF2328: Uncharacterized protein conserved in bacteria (DUF2328); InterPro: IPR018762 Members of this family of hypothetical bacterial proteins have no known function | Back alignment and domain information |
|---|
| >COG5381 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PTZ00108 DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
| >KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PHA02569 39 DNA topoisomerase II large subunit; Provisional | Back alignment and domain information |
|---|
| >COG5385 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PLN03128 DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >PLN03237 DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PTZ00109 DNA gyrase subunit b; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 368 | ||||
| 1jm6_A | 407 | Pyruvate Dehydrogenase Kinase, Isozyme 2, Containin | 2e-60 | ||
| 2btz_A | 394 | Crystal Structures Of Human Pyruvate Dehydrogenase | 5e-60 | ||
| 1y8n_A | 419 | Crystal Structure Of The Pdk3-L2 Complex Length = 4 | 1e-59 | ||
| 2zkj_A | 394 | Crystal Structure Of Human Pdk4-Adp Complex Length | 5e-59 | ||
| 2e0a_A | 394 | Crystal Structure Of Human Pyruvate Dehydrogenase K | 8e-59 | ||
| 2q8f_A | 407 | Structure Of Pyruvate Dehydrogenase Kinase Isoform | 2e-57 | ||
| 1gjv_A | 388 | Branched-chain Alpha-ketoacid Dehydrogenase Kinase | 5e-54 | ||
| 3tz0_A | 418 | Crystal Structure Of Branched-Chain Alpha-Ketoacid | 6e-54 | ||
| 3vad_A | 418 | Crystal Structure Of I170f Mutant Branched-chain Al | 2e-53 | ||
| 3sl2_A | 177 | Atp Forms A Stable Complex With The Essential Histi | 3e-04 |
| >pdb|1JM6|A Chain A, Pyruvate Dehydrogenase Kinase, Isozyme 2, Containing Adp Length = 407 | Back alignment and structure |
|
| >pdb|2BTZ|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase 2 Containing Physiological And Synthetic Ligands Length = 394 | Back alignment and structure |
| >pdb|1Y8N|A Chain A, Crystal Structure Of The Pdk3-L2 Complex Length = 419 | Back alignment and structure |
| >pdb|2ZKJ|A Chain A, Crystal Structure Of Human Pdk4-Adp Complex Length = 394 | Back alignment and structure |
| >pdb|2E0A|A Chain A, Crystal Structure Of Human Pyruvate Dehydrogenase Kinase 4 In Complex With Amppnp Length = 394 | Back alignment and structure |
| >pdb|2Q8F|A Chain A, Structure Of Pyruvate Dehydrogenase Kinase Isoform 1 Length = 407 | Back alignment and structure |
| >pdb|1GJV|A Chain A, Branched-chain Alpha-ketoacid Dehydrogenase Kinase (bck) Complxed With Atp-gamma-s Length = 388 | Back alignment and structure |
| >pdb|3TZ0|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid Dehydrogenase KinaseS-Alpha-Chloroisocaproate Complex Length = 418 | Back alignment and structure |
| >pdb|3VAD|A Chain A, Crystal Structure Of I170f Mutant Branched-chain Alpha-ketoacid Dehydrogenase Kinase In Complex With 3,6-dichlorobenzo[b]thiophene-2- Carboxylic Acid Length = 418 | Back alignment and structure |
| >pdb|3SL2|A Chain A, Atp Forms A Stable Complex With The Essential Histidine Kinase Walk (yycg) Domain Length = 177 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Length = 388 | Back alignment and structure |
|---|
Score = 345 bits (887), Expect = e-118
Identities = 111/358 (31%), Positives = 191/358 (53%), Gaps = 21/358 (5%)
Query: 3 AKKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIA 62
+K ++ +++S I+ ++ M+ G +LL S ++L +ELP+RIA
Sbjct: 17 SKTVTSFYNQSAID---VVAEKPSVRLTPTMMLYSGRSQDGSHLLKSGRYLQQELPVRIA 73
Query: 63 RRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHN 122
R +LP+ + P +L V + Y+ +F+ L FP I+ +DE + Q+++ + H
Sbjct: 74 HRIKGFRSLPFIIGCNPTILHVHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDHK 133
Query: 123 NVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPP 182
+VV ++A GL++ +K ++ + + FLD+ SR+GIRML H+ LH P
Sbjct: 134 DVVTLLAEGLRESRKHIEDE------KLVRYFLDKTLTSRLGIRMLATHHLALH--EDKP 185
Query: 183 HCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFE 242
+G I T++SP ++ + AR +C +YG+AP I G + FP++P L ++ E
Sbjct: 186 DFVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILPE 245
Query: 243 LVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYST 302
L+KN++RA E ++D+ P + I +A+ D+ I++SD GGGI L ++ Y ++T
Sbjct: 246 LLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTT 305
Query: 303 ARNPLDE----------NTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYG 350
A + + G M G+G+GLP SR YA Y GG LQ+ S++G G
Sbjct: 306 AEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIG 363
|
| >1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Length = 419 | Back alignment and structure |
|---|
| >2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Length = 394 | Back alignment and structure |
|---|
| >2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Length = 407 | Back alignment and structure |
|---|
| >2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Length = 394 | Back alignment and structure |
|---|
| >2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Length = 621 | Back alignment and structure |
|---|
| >1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Length = 471 | Back alignment and structure |
|---|
| >2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Length = 530 | Back alignment and structure |
|---|
| >3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Length = 152 | Back alignment and structure |
|---|
| >1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A Length = 150 | Back alignment and structure |
|---|
| >3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Length = 349 | Back alignment and structure |
|---|
| >3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Length = 244 | Back alignment and structure |
|---|
| >3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} Length = 177 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Length = 258 | Back alignment and structure |
|---|
| >4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Length = 268 | Back alignment and structure |
|---|
| >1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* Length = 145 | Back alignment and structure |
|---|
| >1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 Length = 161 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 368 | |||
| 1gkz_A | 388 | [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] | 100.0 | |
| 2q8g_A | 407 | [pyruvate dehydrogenase [lipoamide]] kinase isozy; | 100.0 | |
| 2e0a_A | 394 | Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP | 100.0 | |
| 1y8o_A | 419 | [pyruvate dehydrogenase [lipoamide]] kinase isozy; | 100.0 | |
| 2btz_A | 394 | Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo | 100.0 | |
| 2c2a_A | 258 | Sensor histidine kinase; phosphotransfer, PHOQ, se | 100.0 | |
| 4ew8_A | 268 | Sensor protein DIVL; signal transduction, two-comp | 100.0 | |
| 3jz3_A | 222 | Sensor protein QSEC; helix-turn-helix, kinase doma | 99.97 | |
| 3d36_A | 244 | Sporulation kinase B; GHKL ATPase, four helix bund | 99.97 | |
| 3a0r_A | 349 | Sensor protein; four helix bundle, PAS fold, kinas | 99.97 | |
| 4fpp_A | 247 | Phosphotransferase; four helix bundle, bergerat fo | 99.96 | |
| 1id0_A | 152 | PHOQ histidine kinase; PHOQ/PHOP, signal transduct | 99.95 | |
| 3a0y_A | 152 | Sensor protein; ATP-LID, kinase, phosphoprotein, t | 99.94 | |
| 1ysr_A | 150 | Sensor-type histidine kinase PRRB; ATP-binding dom | 99.94 | |
| 1bxd_A | 161 | ENVZ(290-450), protein (osmolarity sensor protein | 99.93 | |
| 3sl2_A | 177 | Sensor histidine kinase YYCG; ATP binding, intact | 99.93 | |
| 1b3q_A | 379 | Protein (chemotaxis protein CHEA); histine kinase, | 99.93 | |
| 1r62_A | 160 | Nitrogen regulation protein NR(II); PII, histidine | 99.93 | |
| 1i58_A | 189 | Chemotaxis protein CHEA; beta-alpha sandwich, sign | 99.92 | |
| 3ehh_A | 218 | Sensor kinase (YOCF protein); four-helix bundle, G | 99.9 | |
| 3ehg_A | 128 | Sensor kinase (YOCF protein); GHL ATPase domain, t | 99.85 | |
| 3zxo_A | 129 | Redox sensor histidine kinase response regulator; | 99.83 | |
| 3zxq_A | 124 | Hypoxia sensor histidine kinase response regulato; | 99.81 | |
| 1th8_A | 145 | Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s | 99.77 | |
| 1mu5_A | 471 | Type II DNA topoisomerase VI subunit B; GHKL ATPas | 99.75 | |
| 2zbk_B | 530 | Type 2 DNA topoisomerase 6 subunit B; DNA binding | 99.74 | |
| 2q2e_B | 621 | Type 2 DNA topoisomerase 6 subunit B; DNA-binding, | 99.59 | |
| 1h7s_A | 365 | PMS1 protein homolog 2; DNA repair, GHL ATPase, mi | 98.86 | |
| 3na3_A | 348 | DNA mismatch repair protein MLH1; MUTL protein hom | 98.81 | |
| 1b63_A | 333 | MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A | 98.75 | |
| 1kij_A | 390 | DNA gyrase subunit B; topoisomerase, gyrase B-coum | 98.73 | |
| 3ke6_A | 399 | Protein RV1364C/MT1410; anti-sigma factor, anti-si | 98.71 | |
| 3h4l_A | 367 | DNA mismatch repair protein PMS1; ATP binding, DNA | 98.63 | |
| 2wer_A | 220 | ATP-dependent molecular chaperone HSP82; ATPase, A | 98.47 | |
| 1ixm_A | 192 | SPO0B, protein (sporulation response regulatory pr | 98.43 | |
| 1qy5_A | 269 | Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N | 98.36 | |
| 1yc1_A | 264 | HSP 86, heat shock protein HSP 90-alpha; cell-cycl | 98.29 | |
| 2ior_A | 235 | Chaperone protein HTPG; heat shock protein, HSP90; | 98.13 | |
| 1s16_A | 390 | Topoisomerase IV subunit B; two-domain protein com | 98.04 | |
| 2gqp_A | 236 | Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, | 97.97 | |
| 3t0h_A | 228 | Heat shock protein HSP 90-alpha; chaperone, ATPase | 97.91 | |
| 3o0i_A | 256 | HSP90AA1 protein; HSP90 heat-shock proteins, chape | 97.79 | |
| 4duh_A | 220 | DNA gyrase subunit B; structure-based drug design, | 97.73 | |
| 1ei1_A | 391 | DNA gyrase B, GYRB; ATPase domain, dimer, isomeras | 97.73 | |
| 3peh_A | 281 | Endoplasmin homolog; structural genomics, structur | 97.72 | |
| 1y4s_A | 559 | Chaperone protein HTPG; HSP90, molecular chaperone | 97.66 | |
| 3nmq_A | 239 | Heat shock protein HSP 90-beta; ATPase, chaperone- | 97.62 | |
| 2cg9_A | 677 | ATP-dependent molecular chaperone HSP82; chaperone | 97.62 | |
| 2o1u_A | 666 | Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, | 97.46 | |
| 2ioq_A | 624 | Chaperone protein HTPG; heat shock protein, HSP90; | 97.38 | |
| 4emv_A | 226 | DNA topoisomerase IV, B subunit; protein-inhibitor | 97.36 | |
| 3ied_A | 272 | Heat shock protein; HSP90, chaperone, structural g | 97.34 | |
| 3cwv_A | 369 | DNA gyrase, B subunit, truncated; structural genom | 97.32 | |
| 1zxm_A | 400 | TOPO IIA ATPase, DNA topoisomerase II, alpha isozy | 97.28 | |
| 3fv5_A | 201 | DNA topoisomerase 4 subunit B; topoisomerase IV B | 97.27 | |
| 3ttz_A | 198 | DNA gyrase subunit B; protein-inhibitor complex, A | 97.16 | |
| 1pvg_A | 418 | DNA topoisomerase II; GHKL ATPase domain; HET: DNA | 97.05 | |
| 3lnu_A | 408 | Topoisomerase IV subunit B; PARE, ATP-binding, nuc | 96.93 | |
| 3zcc_A | 114 | HAMP, osmolarity sensor protein ENVZ; signaling pr | 94.79 | |
| 4gfh_A | 1177 | DNA topoisomerase 2; topoisomerase, protein-DNA co | 94.57 | |
| 3zrx_A | 115 | AF1503 protein, osmolarity sensor protein ENVZ; si | 90.5 |
| >1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-48 Score=371.31 Aligned_cols=339 Identities=32% Similarity=0.612 Sum_probs=286.1
Q ss_pred HHHHHhhcCCCCCCCHHHHHhcCCCCChHHHHHHHHHHHHHhHHHHHHHHHHHhcCCccccCChhHHHHHHHHHHHHHHh
Q 017683 16 EEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDL 95 (368)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~l~~rv~~r~~~l~~~~~~l~~~~~i~~~~~~~~~~~~~l 95 (368)
..|.+|+.+++.|+|+++|++||..++...++.++++++++++.|+++|+++++.+|+.+..+|.+..++++|..+++++
T Consensus 27 ~~i~~~~~~~~~~~sl~~l~~~g~~~~~~~ll~s~~~l~~elp~rla~ri~~l~~lp~~~~~~~~i~~~~~~~~~~~~~l 106 (388)
T 1gkz_A 27 SAIDVVAEKPSVRLTPTMMLYSGRSQDGSHLLKSGRYLQQELPVRIAHRIKGFRSLPFIIGCNPTILHVHELYIRAFQKL 106 (388)
T ss_dssp -----------CEESSSCEECCCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCCCCcCHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhhhcCchHHHHHHHHHHHHHHH
Confidence 35678999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCchhHHHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhh
Q 017683 96 RSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVEL 175 (368)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l 175 (368)
......+..+..+++.+++..+.|++++|+..+..++.++..... ..+..+++++.+..++.+++.++++++++
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~i~helrtpL~~i~~g~~~l~~~~~------~~~~~~~~l~~i~~~~~~l~~li~~ll~l 180 (388)
T 1gkz_A 107 TDFPPIKDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIE------DEKLVRYFLDKTLTSRLGIRMLATHHLAL 180 (388)
T ss_dssp HHSCCCCSHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHSSSSCC------STTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhCcCCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhcc------CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888888889999999999999999999999988887765433 35678999999999999999999999999
Q ss_pred cCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCceeeecchhHHHHHHHHHHHHHHHHHHhh
Q 017683 176 HNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERY 255 (368)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~ 255 (368)
++. ..+..+...+++++.+++++++..+...+..+|+..+.+.+..+.+..+.+|+.+|.+||.|||+||++|+.+.+
T Consensus 181 ~~~--~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~g~~~~i~i~~~~~~~~~~~~~~L~~il~NLl~NAik~~~~~~ 258 (388)
T 1gkz_A 181 HED--KPDFVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILPELLKNAMRATMESH 258 (388)
T ss_dssp TSC--CTTEETTEEEEECHHHHHHHHHHHHHHHHHHHHSCCCCEEEEESTTCCEEECCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hcc--CCCccceecCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEccCCCceeecHHHHHHHHHHHHHHHHHHhhccc
Confidence 998 667777788999999999999999999999998888899998888888999999999999999999999998832
Q ss_pred cCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCc--cc-cc-------ccCCCCCCcccc
Q 017683 256 MDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDE--NT-DL-------AADKGTMAGYGY 325 (368)
Q Consensus 256 ~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~--~~-~~-------~~~~~~~~g~Gl 325 (368)
...+...++|.|.+...++.+.|.|+|+|+|||++.++++|++||+++...... .. .+ +...+...|+||
T Consensus 259 ~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~GL 338 (388)
T 1gkz_A 259 LDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGF 338 (388)
T ss_dssp TTCTTSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC-------------------------CCSCSSC
T ss_pred cCCCCCCCCEEEEEEeCCCEEEEEEEEeCCCcCHHHHHHhcCcccccCCCcccccccccchhhcccccccCCCCcCCccC
Confidence 111111248999999999999999999999999999999999999998641000 00 00 001223469999
Q ss_pred CHHHHHHHHHHhCCeEEEEecCCCeeEEEEEEecccc
Q 017683 326 GLPISRLYARYFGGDLQIISMEGYGELNMFSVLLYSY 362 (368)
Q Consensus 326 GL~i~k~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~~ 362 (368)
||+|||.++++|||+|++.|.+|.||+|+|+||....
T Consensus 339 GL~i~r~i~~~~gG~i~v~s~~g~Gt~f~i~LP~~~~ 375 (388)
T 1gkz_A 339 GLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRHIDG 375 (388)
T ss_dssp HHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECSSS
T ss_pred CHHHHHHHHHHhCCEEEEEecCCCcEEEEEEecCCCC
Confidence 9999999999999999999999999999999998754
|
| >2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A | Back alignment and structure |
|---|
| >2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* | Back alignment and structure |
|---|
| >1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* | Back alignment and structure |
|---|
| >2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* | Back alignment and structure |
|---|
| >2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* | Back alignment and structure |
|---|
| >4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} | Back alignment and structure |
|---|
| >3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
| >3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
| >3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} | Back alignment and structure |
|---|
| >4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A | Back alignment and structure |
|---|
| >1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A | Back alignment and structure |
|---|
| >3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A | Back alignment and structure |
|---|
| >1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A | Back alignment and structure |
|---|
| >1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 | Back alignment and structure |
|---|
| >3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} | Back alignment and structure |
|---|
| >1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A | Back alignment and structure |
|---|
| >1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 | Back alignment and structure |
|---|
| >1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A* | Back alignment and structure |
|---|
| >3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* | Back alignment and structure |
|---|
| >3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis} | Back alignment and structure |
|---|
| >3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* | Back alignment and structure |
|---|
| >1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* | Back alignment and structure |
|---|
| >2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} | Back alignment and structure |
|---|
| >2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} | Back alignment and structure |
|---|
| >1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* | Back alignment and structure |
|---|
| >3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* | Back alignment and structure |
|---|
| >1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A | Back alignment and structure |
|---|
| >1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A | Back alignment and structure |
|---|
| >1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* | Back alignment and structure |
|---|
| >1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* | Back alignment and structure |
|---|
| >2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} | Back alignment and structure |
|---|
| >1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* | Back alignment and structure |
|---|
| >3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... | Back alignment and structure |
|---|
| >3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* | Back alignment and structure |
|---|
| >4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* | Back alignment and structure |
|---|
| >1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* | Back alignment and structure |
|---|
| >1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A | Back alignment and structure |
|---|
| >3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1 | Back alignment and structure |
|---|
| >2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A | Back alignment and structure |
|---|
| >2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A | Back alignment and structure |
|---|
| >4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* | Back alignment and structure |
|---|
| >3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
| >3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} | Back alignment and structure |
|---|
| >1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* | Back alignment and structure |
|---|
| >3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* | Back alignment and structure |
|---|
| >3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* | Back alignment and structure |
|---|
| >1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* | Back alignment and structure |
|---|
| >3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* | Back alignment and structure |
|---|
| >3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A | Back alignment and structure |
|---|
| >4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 368 | ||||
| d1y8oa1 | 164 | a.29.5.1 (A:13-176) Pyruvate dehydrogenase kinase | 3e-66 | |
| d1jm6a1 | 167 | a.29.5.1 (A:1003-1169) Pyruvate dehydrogenase kina | 8e-66 | |
| d1gkza1 | 148 | a.29.5.1 (A:38-185) Branched-chain alpha-ketoacid | 5e-64 | |
| d1gkza2 | 193 | d.122.1.4 (A:186-378) Branched-chain alpha-ketoaci | 2e-33 | |
| d1jm6a2 | 190 | d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kin | 5e-33 | |
| d1y8oa2 | 125 | d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinas | 2e-19 | |
| d1ysra1 | 148 | d.122.1.3 (A:299-446) Sensor-type histidine kinase | 7e-10 | |
| d2c2aa2 | 161 | d.122.1.3 (A:321-481) Sensor histidine kinase TM08 | 3e-08 | |
| d1bxda_ | 161 | d.122.1.3 (A:) Histidine kinase domain of the osmo | 1e-07 | |
| d1id0a_ | 146 | d.122.1.3 (A:) Histidine kinase PhoQ domain {Esche | 2e-06 | |
| d2hkja3 | 219 | d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {A | 0.001 |
| >d1y8oa1 a.29.5.1 (A:13-176) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: alpha-ketoacid dehydrogenase kinase, N-terminal domain family: alpha-ketoacid dehydrogenase kinase, N-terminal domain domain: Pyruvate dehydrogenase kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 205 bits (522), Expect = 3e-66
Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 6/166 (3%)
Query: 16 EEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGL 75
+++ R+ + +S++ ++FG + S FL KELP+R+A E+ LP L
Sbjct: 2 KQIERYSRFSPSPLSIKQFLDFGRDNACEK--TSYMFLRKELPVRLANTMREVNLLPDNL 59
Query: 76 SEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDE--RDFTQMIKAIKVRHNNVVPMMALGLQ 133
+P+V V+ WY+ SF +L + + + +F Q++ ++ RHN+VVP MA G+
Sbjct: 60 LNRPSVGLVQSWYMQSFLELLEYENKSPEDPQVLDNFLQVLIKVRNRHNDVVPTMAQGVI 119
Query: 134 QLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPN 179
+ K++ I FLDRFY +RI RMLI QH L +
Sbjct: 120 EYKEKFGFDPF--ISTNIQYFLDRFYTNRISFRMLINQHTLLFGGD 163
|
| >d1jm6a1 a.29.5.1 (A:1003-1169) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Length = 167 | Back information, alignment and structure |
|---|
| >d1gkza1 a.29.5.1 (A:38-185) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 148 | Back information, alignment and structure |
|---|
| >d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 193 | Back information, alignment and structure |
|---|
| >d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Length = 190 | Back information, alignment and structure |
|---|
| >d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
| >d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 148 | Back information, alignment and structure |
|---|
| >d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Length = 161 | Back information, alignment and structure |
|---|
| >d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
| >d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Length = 146 | Back information, alignment and structure |
|---|
| >d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Length = 219 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 368 | |||
| d1gkza2 | 193 | Branched-chain alpha-ketoacid dehydrogenase kinase | 100.0 | |
| d2c2aa2 | 161 | Sensor histidine kinase TM0853 {Thermotoga maritim | 100.0 | |
| d1id0a_ | 146 | Histidine kinase PhoQ domain {Escherichia coli [Ta | 100.0 | |
| d1jm6a2 | 190 | Pyruvate dehydrogenase kinase {Rat (Rattus norvegi | 100.0 | |
| d1ysra1 | 148 | Sensor-type histidine kinase PrrB {Mycobacterium t | 100.0 | |
| d1bxda_ | 161 | Histidine kinase domain of the osmosensor EnvZ {Es | 99.97 | |
| d1r62a_ | 156 | Nitrogen regulation protein NtrB, C-terminal domai | 99.96 | |
| d1jm6a1 | 167 | Pyruvate dehydrogenase kinase {Rat (Rattus norvegi | 99.9 | |
| d1y8oa1 | 164 | Pyruvate dehydrogenase kinase {Human (Homo sapiens | 99.88 | |
| d1gkza1 | 148 | Branched-chain alpha-ketoacid dehydrogenase kinase | 99.88 | |
| d1y8oa2 | 125 | Pyruvate dehydrogenase kinase {Human (Homo sapiens | 99.71 | |
| d2hkja3 | 219 | Topoisomerase VI-B subunit {Archaeon Sulfolobus sh | 99.65 | |
| d1th8a_ | 139 | Anti-sigma factor spoIIab {Bacillus stearothermoph | 99.62 | |
| d1i58a_ | 189 | Histidine kinase CheA {Thermotoga maritima [TaxId: | 99.61 | |
| d1ixma_ | 179 | Sporulation response regulatory protein Spo0B {Bac | 99.61 | |
| d1h7sa2 | 203 | DNA mismatch repair protein PMS2 {Human (Homo sapi | 98.07 | |
| d1b63a2 | 218 | DNA mismatch repair protein MutL {Escherichia coli | 97.87 | |
| d2c2aa1 | 89 | Sensor histidine kinase TM0853 {Thermotoga maritim | 97.74 | |
| d1joya_ | 67 | EnvZ histidine kinase {Escherichia coli [TaxId: 56 | 97.48 | |
| d1s14a_ | 168 | Topoisomerase IV subunit B {Escherichia coli [TaxI | 97.16 | |
| d1kija2 | 212 | DNA gyrase B {Thermus thermophilus [TaxId: 274]} | 97.03 | |
| d1pvga2 | 239 | DNA topoisomerase II {Baker's yeast (Saccharomyces | 97.01 | |
| d1ei1a2 | 219 | DNA gyrase B {Escherichia coli [TaxId: 562]} | 96.93 | |
| d1uyla_ | 208 | HSP90 {Human (Homo sapiens) [TaxId: 9606]} | 96.41 | |
| d2iwxa1 | 213 | HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T | 96.2 | |
| d2gqpa1 | 227 | HSP90 {Dog (Canis familiaris) [TaxId: 9615]} | 95.99 |
| >d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: alpha-ketoacid dehydrogenase kinase, C-terminal domain domain: Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=1.1e-34 Score=246.97 Aligned_cols=179 Identities=34% Similarity=0.624 Sum_probs=148.6
Q ss_pred cccccccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 017683 184 CIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAP 263 (368)
Q Consensus 184 ~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~ 263 (368)
+++.+...+++.++++++++.++..+..+++..+.+.+..+.+..+.+||.+|.|||.|||.||++|+.+.+.......+
T Consensus 2 ~vG~I~t~~~l~~lv~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~d~~~l~qvl~NLl~NAi~~t~~~~~~~~~~~~ 81 (193)
T d1gkza2 2 FVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVP 81 (193)
T ss_dssp EETTEEEEECHHHHHHHHHHHHHHHHHHHHSCCCCEEEEESTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCC
T ss_pred ccCCCcCCCCHHHHHHHHHHHHHHHHHHhcCCCcEEEeccCCCceeeecHHHHHHHHHHHHHHHHHhcccCceeeccccc
Confidence 45666788999999999999999999888888889999999899999999999999999999999999875433333356
Q ss_pred CEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcc---cc-------cccCCCCCCccccCHHHHHHH
Q 017683 264 PIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDEN---TD-------LAADKGTMAGYGYGLPISRLY 333 (368)
Q Consensus 264 ~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~---~~-------~~~~~~~~~g~GlGL~i~k~i 333 (368)
+|.|.+...++.+.|+|+|+|+|||++.++++|+|||++++...... +. .+......+|+||||+|||.+
T Consensus 82 ~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~~iF~~f~tt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~GlGL~i~k~i 161 (193)
T d1gkza2 82 DVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAY 161 (193)
T ss_dssp CEEEEEEECSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC-------------------------CCSCSSCHHHHHHHH
T ss_pred eEEEEEEccCCEEEEEEecCCCCCCHHHHHHhcCCceecccccccccccccccccccccccccccccccCCcCHHHHHHH
Confidence 89999999999999999999999999999999999999986522100 00 012334457999999999999
Q ss_pred HHHhCCeEEEEecCCCeeEEEEEEecccc
Q 017683 334 ARYFGGDLQIISMEGYGELNMFSVLLYSY 362 (368)
Q Consensus 334 ~~~~gG~i~v~s~~g~Gt~f~i~lP~~~~ 362 (368)
++.|||+|++.|.+|+||+|+|+||...+
T Consensus 162 ve~~gG~i~v~S~~g~Gt~f~l~L~~~~~ 190 (193)
T d1gkza2 162 AEYLGGSLQLQSLQGIGTDVYLRLRHIDG 190 (193)
T ss_dssp HHHTTCEEEEEEETTTEEEEEEEEECSSS
T ss_pred HHHCCCEEEEEecCCCceEEEEEECCCCC
Confidence 99999999999999999999999998643
|
| >d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1jm6a1 a.29.5.1 (A:1003-1169) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1y8oa1 a.29.5.1 (A:13-176) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1gkza1 a.29.5.1 (A:38-185) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} | Back information, alignment and structure |
|---|
| >d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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| >d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1joya_ a.30.2.1 (A:) EnvZ histidine kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
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