Citrus Sinensis ID: 017703

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------
Protein Sequence
MGRKEREKEQLIRTLNNHLNNIHETLQVLNQTAASSLEKVSWNDVIQMGEQVSKKATVVGMLWTGETPEAKAIEENMAEYFNMLQGFILLSHGSTVGAGPTLSLSIHASVKQVVDSSFKLMMESITLYAGSDNKDKEHLMPQYVGAVWEACSALKKTPATNITAIGRAMTQVAVSMKDVLREMKELKPSSSDQNNEASHDDSAKADSEHQEDDNSSLDELGNDLSSEEMKVAQLAIGIVSDMLVVIKELIRTITGLLKHENPDDGGKFVDTLERLLKLCQGIGVQIDELGASLYPPQELSVIKAGSVKILSMTDELQKEVESFNSSSEAFIQACNGLRSSLKQMDSEVDCFNTTDLEAKLQNVAISN
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcEccc
Coil and Loop (DISEMBL)
MGRKEREKEQLIRTLNNHLNNIHETLQVLNQTAASSLEKVSWNDVIQMGEQVSKKATVVGMLWTGETPEAKAIEENMAEYFNMLQGFILLshgstvgagptlsLSIHASVKQVVDSSFKLMMESITLyagsdnkdkehlmpQYVGAVWEACSAlkktpatnITAIGRAMTQVAVSMKDVLREMkelkpsssdqnneashddsakadsehqeddnssldelgndlssEEMKVAQLAIGIVSDMLVVIKELIRTITGLlkhenpddggkFVDTLERLLKLCQGIGVQIdelgaslyppqelsvikAGSVKILSMTDELQKEVESFNSSSEAFIQACNGLRSSLKQMDSEVDCFNTTDLEAKLQNVAISN
Flexible Loop (DISEMBL)
MGRKEREKEQLIRTLNNHLNNIHETLQVLNQTAASSLEKVSWNDVIQMGEQVSKKATVVGMLWTGETPEAKAIEENMAEYFNMLQGFILLSHGSTVGAGPTLSLSIHASVKQVVDSSFKLMMESITLYagsdnkdkeHLMPQYVGAVWEACSALKKTPATNITAIGRAMTQVAVSMKDVLREMKElkpsssdqnneasHDDSAKadsehqeddnsSLDELGNDLSSEEMKVAQLAIGIVSDMLVVIKELIRTITgllkhenpddGGKFVDTLERLLKLCQGIGVQIDELGASLYPPQELSVIKAGSVKILSMTDELQKEVESFNSSSEAFIQACNGLRSSLKQMDSEVDCFNTTDLEAKLQNVAISN
Low Complexity Region (SEG)
MGRKEREKEQLIRTLNNHLNNIHETLQVLNQTAASSLEKVSWNDVIQMGEQVSKKATVVGMLWTGETPEAKAIEENMAEYFNMLQGFILLSHGSTVGAGPTLSLSIHASVKQVVDSSFKLMMESITLYAGSDNKDKEHLMPQYVGAVWEACSALKKTPATNITAIGRAMTQVAVSMKDVLREMKELKPSSSDQNNEASHDDSAKADSEHQEDDNSSLDELGNDLSSEEMKVAQLAIGIVSDMLVVIKELIRTITGLLKHENPDDGGKFVDTLERLLKLCQGIGVQIDELGASLYPPQELSVIKAGSVKILSMTDELQKEVESFNSSSEAFIQACNGLRSSLKQMDSEVDCFNTTDLEAKLQNVAISN
Disordered region (IsUnstruct)
***********IRTLNNHLNNIHETLQVLNQTAASSLEKVSWNDVIQMGEQVSKKATVVGMLWTGETPEAKAIEENMAEYFNMLQGFILLSHGSTVGAGPTLSLSIHASVKQVVDSSFKLMMESITLYAGSDNKDKEHLMPQYVGAVWEACSALKKTPATNITAIGRAMTQVAVSM******************************************************VAQLAIGIVSDMLVVIKELIRTITGLLKHENPDDGGKFVDTLERLLKLCQGIGVQIDELGASLYPPQELSVIKAGSVKILSM*****************FIQACNG************DCFN***************
Disordered Region (DISOPRED)
***************NNHLNNIHE****************SWNDVIQMGEQVSKKATVVGMLWT*************AEYFNMLQGFILLSHGSTVGAGPTLSLSIHASVKQVVDSSFKLMM*********************VGAVWEACSALKKTPATNITAIGRAMTQVAVSMKDVLREMKEL*************************************LSSEEMKVAQLAIGIVSDMLVVIKELIRTI****************DTLERLLKLCQGIGVQIDELGASLYPPQELSVIKAGSVKILSMTDELQKEVESFNSSSEAFIQACNGLRSSLKQMDSEVDCFNTTDLEAK*QNV****
Disordered Region (DISEMBL)
*********QLIRTLNNHLNNIHETLQVLNQTAASSLEKVSWNDVIQMGEQVSKKATVVGMLWTGETPEAKAIEENMAEYFNMLQGFILLSHGSTVGAGPTLSLSIHASVKQVVDSSFKLMMESITLYAGSDNKDKEHLMPQYVGAVWEACSALKKTPATNITAIGRAMTQVAVSMKDVLREMKE*********************************ELGNDLSSEEMKVAQLAIGIVSDMLVVIKELIRTITGLLKHENPDDGGKFVDTLERLLKLCQGIGVQIDELGASLYPPQELSVIKAGSVKILSMTDEL**********SEAFIQACNGLRSSLKQMDSEVDCFNTTDLEAKLQNVAISN
Disordered Region (DISPRO)
*****REKEQLIRTLNNHLNNIHETLQVLNQTAASSLEKVSWNDVIQMGEQVSKKATVVGMLWTGETPEAKAIEENMAEYFNMLQGFILLSHGSTVGAGPTLSLSIHASVKQVVDSSFKLMMESITLYAGSDNKDKEHLMPQYVGAVWEACSALKKTPATNITAIGRAMTQVAVSMKDVLREMKELK*********************************GNDLSSEEMKVAQLAIGIVSDMLVVIKELIRTITGLLKHENPDDGGKFVDTLERLLKLCQGIGVQIDELGASLYPPQELSVIKAGSVKILSMTDELQKEVESFNSSSEAFIQACNGLRSSLKQMDSEVDCFNTTDLEAKLQNVAI**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
xxxxxxxxxxxxxxxxxxxxxIHETLQVLNQTAASSLEKVSWNDVIQMGEQVSKKATVVGMLWTGETPEAKAIEENMAEYFNMLQGFILLSHGSTVGAGPTLSLSIHASVKQVVDSSFKLMMESITLYAGSDNKDKEHLMPQYVGAVWEACSALKKTPATNITAIGRAMTQVAVSMKDVLREMKELKPSSSDQNNEASHDDSAKADSEHQEDDNSSLDELGNDLSSEEMKVAQLAIGIVSDMLVVIKELIRTITGLLKHENPDDGGKFVDTLERLLKLCQGIGVQIDELGASLYPPQELSVIKAGSVKILSMTDELQKEVESFNSSSEAFIQACNGLRSSLKQMDSEVDCFNTTDLEAKLQNVAISN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	367	2.2.26 [Sep-21-2011]
Q5U4I3	331	Cyclin-D1-binding protein	N/A	no	0.610	0.676	0.218	2e-06
Q4R809	332	Cyclin-D1-binding protein	N/A	no	0.675	0.746	0.231	9e-05
O95273	360	Cyclin-D1-binding protein	yes	no	0.689	0.702	0.221	0.0006

>sp|Q5U4I3|CCDB1_XENLA Cyclin-D1-binding protein 1 homolog OS=Xenopus laevis GN=ccndbp1 PE=2 SV=2

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 110/252 (43%), Gaps = 28/252 (11%)

Query: 99  GPTLSLSIHASVKQVVDSSFKLMMESITLYAGSDNKDKEHLMPQYVGAVWEACSALKKTP 158
           G TL  ++  ++  V++ + +L+   + L +   +  +  L+    G+VWEAC   +K P
Sbjct: 93  GITLRKTVREAIADVIEGTIQLV--EVILSSRIQSLSQAQLV--STGSVWEACDQWEKLP 148

Query: 159 ATNITAIGRAMTQVAVSMKDVLREMKELKPSSSDQNNEASHDDSAKADSEHQEDDNSSLD 218
             N+ A+   ++     +KD + E+++ +    D  ++   DD   A             
Sbjct: 149 KDNLAAVQVIVSGYLDVVKDAIEEVEQAQTDGEDPFSDIPEDDEIGARGNQD-------- 200

Query: 219 ELGNDLSSEEMKVAQLAIGIVSDMLVVIKELIRTITGLLKHENPDDGGKFVDTLERLLKL 278
                 S  + ++    +G++      +K++I    G +K     D  + V  L+ L+ +
Sbjct: 201 ---TYWSEADRRLMAPCLGLMKASKACLKKVI----GAIKAHGKADTAEHVAQLDDLVDV 253

Query: 279 CQGIGVQIDELGASLYPPQELSVIKAGSVKILSMTDELQKEVESFNSSSEAFIQACNGLR 338
            Q +   +DEL  S+YPP   + ++  + K+ S+     K+V +   SS      C    
Sbjct: 254 TQEVSPSVDELALSMYPPMNHATVRLNAAKLSSVL----KKVLAITRSS----HVCPEAE 305

Query: 339 SSLKQ-MDSEVD 349
           S+  Q +DS VD
Sbjct: 306 STWIQFLDSAVD 317

May negatively regulate cell cycle progression.
Xenopus laevis (taxid: 8355)

>sp|Q4R809|CCDB1_MACFA Cyclin-D1-binding protein 1 OS=Macaca fascicularis GN=CCNDBP1 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 120/285 (42%), Gaps = 37/285 (12%)

Query: 42  WNDVIQMGEQVSKKATVVGMLWTG-ETPEAKAIEENMAEYFNMLQGFILLSHGSTVGAGP 100
           W  + +    VS++AT +  +++    P  +  ++   +    ++ FI + +      G 
Sbjct: 53  WRRLNEAAVTVSREATTLTTVFSQLPLPSPQETQKFCEQVHAAIKAFIAVYYLLPKDQGI 112

Query: 101 TLSLSIHASVKQVVDSSFKLM-MESITLYAGSDNKDKEHLMPQYVGAVWEACSALKKTPA 159
           TL   +  +   +VD   +LM + SIT     +N D    +  Y  +VW AC  + + P 
Sbjct: 113 TLRKLVRGATLDIVDGMAQLMEVLSITPTQSPENND----LISY-NSVWVACQQMPQIPR 167

Query: 160 TNITAIGRAMTQVAVSMKDVLREM----KELKPSS-----SDQNNEASHDDSAKADSEHQ 210
            N  A    +T+    +KD   EM    +E  P S     +D+NN  +H+D         
Sbjct: 168 DNKAAALLMLTKNVDFVKDAHEEMERAVEECDPYSGLLNDTDENNSDNHND--------- 218

Query: 211 EDD---NSSLDELGNDLSSEEMKVAQLAIGIVSDMLVVIKELIRTITGLLKHENPDDGGK 267
           EDD     S  +L      +E+ +  LA+   S      K  ++ I  L+      D   
Sbjct: 219 EDDVLGFPSNQDLYWSEDDQELIIPCLALVRAS------KACLKKIRILVAENGKKDQ-- 270

Query: 268 FVDTLERLLKLCQGIGVQIDELGASLYPPQELSVIKAGSVKILSM 312
            V  L+ ++ +   I   +D+L  S+YPP     ++  S K++S+
Sbjct: 271 -VAQLDDIVDISDEISPSVDDLALSIYPPMCHLTVRINSAKLVSV 314

May negatively regulate cell cycle progression. May act at least in part via inhibition of the cyclin-D1/CDK4 complex, thereby preventing phosphorylation of RB1 and blocking E2F-dependent transcription.

Macaca fascicularis (taxid: 9541)

>sp|O95273|CCDB1_HUMAN Cyclin-D1-binding protein 1 OS=Homo sapiens GN=CCNDBP1 PE=1 SV=2

 Score = 45.4 bits (106), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 120/280 (42%), Gaps = 27/280 (9%)

Query: 42  WNDVIQMGEQVSKKATVVGMLWTG-ETPEAKAIEENMAEYFNMLQGFILLSHGSTVGAGP 100
           W  + +    VS++AT + ++++    P  +  ++   +    ++ FI + +      G 
Sbjct: 53  WRRLNEAAVTVSREATTLTIVFSQLPLPSPQETQKFCEQVHAAIKAFIAVYYLLPKDQGI 112

Query: 101 TLSLSIHASVKQVVDSSFKLM-MESITLYAGSDNKDKEHLMPQYVGAVWEACSALKKTPA 159
           TL   +  +   +VD   +LM + S+T     +N D    +  Y  +VW AC  + + P 
Sbjct: 113 TLRKLVRGATLDIVDGMAQLMEVLSVTPTQSPENND----LISY-NSVWVACQQMPQIPR 167

Query: 160 TNITAIGRAMTQVAVSMKDVLREM----KELKPSSSDQNNEASHDDSAKADSEHQEDD-- 213
            N  A    +T+    +KD   EM    +E  P S   N+   ++    +D+ + EDD  
Sbjct: 168 DNKAAALLMLTKNVDFVKDAHEEMEQAVEECDPYSGLLNDTEENN----SDNHNHEDDVL 223

Query: 214 -NSSLDELGNDLSSEEMKVAQLAIGIVSDMLVVIKELIRTITGLLKHENPDDGGKFVDTL 272
              S  +L      +E+ +  LA+   S      K  ++ I  L+      D    V  L
Sbjct: 224 GFPSNQDLYWSEDDQELIIPCLALVRAS------KACLKKIRMLVAENGKKDQ---VAQL 274

Query: 273 ERLLKLCQGIGVQIDELGASLYPPQELSVIKAGSVKILSM 312
           + ++ +   I   +D+L  S+YPP     ++  S K++S+
Sbjct: 275 DDIVDISDEISPSVDDLALSIYPPMCHLTVRINSAKLVSV 314

May negatively regulate cell cycle progression. May act at least in part via inhibition of the cyclin-D1/CDK4 complex, thereby preventing phosphorylation of RB1 and blocking E2F-dependent transcription.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	367
224101795	362	predicted protein [Populus trichocarpa]	0.983	0.997	0.663	1e-137
225424128	364	PREDICTED: cyclin-D1-binding protein 1 h	0.991	1.0	0.659	1e-136
255582925	364	conserved hypothetical protein [Ricinus	0.991	1.0	0.659	1e-129
449434576	364	PREDICTED: cyclin-D1-binding protein 1 h	0.989	0.997	0.614	1e-123
356574258	399	PREDICTED: uncharacterized protein LOC10	0.972	0.894	0.626	1e-120
224108379	304	predicted protein [Populus trichocarpa]	0.828	1.0	0.688	1e-118
147819073	355	hypothetical protein VITISV_043108 [Viti	0.839	0.867	0.647	1e-111
297850746	355	hypothetical protein ARALYDRAFT_472548 [	0.953	0.985	0.546	1e-104
15219987	357	uncharacterized protein [Arabidopsis tha	0.956	0.983	0.543	1e-102
297838941	359	hypothetical protein ARALYDRAFT_476247 [	0.959	0.980	0.533	9e-98

>gi|224101795|ref|XP_002312423.1| predicted protein [Populus trichocarpa] gi|222852243|gb|EEE89790.1| predicted protein [Populus trichocarpa]

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 242/365 (66%), Positives = 300/365 (82%), Gaps = 4/365 (1%)

Query: 1   MGRKEREKEQLIRTLNNHLNNIHETLQVLNQTAASSLEKVSWNDVIQMGEQVSKKATVVG 60
           MG+ ERE+  L ++L+ HLN IHETLQ+L+QT ASSL+K+ W+DV++ G+QVSK+AT+VG
Sbjct: 1   MGKAERER--LNQSLSGHLNTIHETLQLLDQTPASSLDKLCWDDVVKTGDQVSKQATIVG 58

Query: 61  MLWTGETPEAKAIEENMAEYFNMLQGFILLSHGSTVGAGPTLSLSIHASVKQVVDSSFKL 120
           MLWTGETPEAKA+EENM  YFN LQG +LLSHGS VGAGPTLS +IHAS+KQVVD SFKL
Sbjct: 59  MLWTGETPEAKAVEENMVTYFNTLQGLLLLSHGSMVGAGPTLSSAIHASIKQVVDCSFKL 118

Query: 121 MMESITLYAGSDNKDKEHLMPQYVGAVWEACSALKKTPATNITAIGRAMTQVAVSMKDVL 180
           MME+++ Y GS NKD + ++PQ VGAVWEAC ALKKTPA+NITAIGRAMTQVAVS+KDVL
Sbjct: 119 MMETVSSY-GSRNKDFKLVVPQLVGAVWEACDALKKTPASNITAIGRAMTQVAVSVKDVL 177

Query: 181 REMKELKPSSSDQNNEASHDDSAKADSEHQEDDNSSLDELGNDLSSEEMKVAQLAIGIVS 240
           REMKELKP  S+Q   ASHD ++  D+   ++D+ S D+LGNDLS EEMKVAQ AIG+++
Sbjct: 178 REMKELKPGPSNQTEAASHDVASHDDTRLNDNDSLS-DDLGNDLSPEEMKVAQTAIGVMT 236

Query: 241 DMLVVIKELIRTITGLLKHENPDDGGKFVDTLERLLKLCQGIGVQIDELGASLYPPQELS 300
           + +VV+KELIRTITGLLK E P D G FVDTLE+LLKLCQ IGVQIDELGASLYPPQE  
Sbjct: 237 ETVVVLKELIRTITGLLKQEKPKDSGNFVDTLEKLLKLCQEIGVQIDELGASLYPPQEFP 296

Query: 301 VIKAGSVKILSMTDELQKEVESFNSSSEAFIQACNGLRSSLKQMDSEVDCFNTTDLEAKL 360
            +KA   KI S+ DE+  +VES  S SEA  QACN L+SS+KQM+  +DC +T+++E+ +
Sbjct: 297 ALKAALEKISSIIDEVWSKVESLTSPSEAIFQACNDLKSSMKQMEVTLDCCSTSEIESIM 356

Query: 361 QNVAI 365
           QNV++
Sbjct: 357 QNVSL 361

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424128|ref|XP_002280178.1| PREDICTED: cyclin-D1-binding protein 1 homolog [Vitis vinifera] gi|297737743|emb|CBI26944.3| unnamed protein product [Vitis vinifera]

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 242/367 (65%), Positives = 295/367 (80%), Gaps = 3/367 (0%)

Query: 1   MGRKEREKEQLIRTLNNHLNNIHETLQVLNQTAASSLEKVSWNDVIQMGEQVSKKATVVG 60
           M R +RE  QL RTLN+HLNNIHET QVL+QT++  L+KVSW+DVIQMGEQV K+AT+VG
Sbjct: 1   MSRAKRE--QLSRTLNSHLNNIHETFQVLDQTSSLPLDKVSWDDVIQMGEQVYKQATIVG 58

Query: 61  MLWTGETPEAKAIEENMAEYFNMLQGFILLSHGSTVGAGPTLSLSIHASVKQVVDSSFKL 120
           MLWTGE PE  A+E NM  YFNMLQGF+ LSHGSTVGAGPTLS SIHASVKQVVDSSF+L
Sbjct: 59  MLWTGEAPEVSALEGNMEAYFNMLQGFLFLSHGSTVGAGPTLSSSIHASVKQVVDSSFRL 118

Query: 121 MMESITLYAGSDNKDKEHLMPQYVGAVWEACSALKKTPATNITAIGRAMTQVAVSMKDVL 180
           + ES++ Y GS N+D++  +PQ VGAVWEACSALKKTPATNITAIGR MTQVAVSMKDVL
Sbjct: 119 LKESVSSY-GSRNRDQKLSIPQLVGAVWEACSALKKTPATNITAIGRTMTQVAVSMKDVL 177

Query: 181 REMKELKPSSSDQNNEASHDDSAKADSEHQEDDNSSLDELGNDLSSEEMKVAQLAIGIVS 240
           REMKELKP+SSD  +E S + S KA+S  + DDNSS  +LGNDLS EEMK+A   I +V+
Sbjct: 178 REMKELKPASSDPTDETSDEASNKAESIPENDDNSSEGDLGNDLSPEEMKIAVSVISVVT 237

Query: 241 DMLVVIKELIRTITGLLKHENPDDGGKFVDTLERLLKLCQGIGVQIDELGASLYPPQELS 300
           ++L VIKELIR ITGL+K E+ +    FVD+LE+LLKLCQGIGVQ+DELGA LYPPQE+ 
Sbjct: 238 EILAVIKELIRCITGLVKQEDANKSSNFVDSLEKLLKLCQGIGVQVDELGACLYPPQEIP 297

Query: 301 VIKAGSVKILSMTDELQKEVESFNSSSEAFIQACNGLRSSLKQMDSEVDCFNTTDLEAKL 360
            +KA + KI    DE+Q E+E+   ++E FIQACN LRSSL Q++S V   +T DL  ++
Sbjct: 298 AMKAAAEKISGSVDEIQAEIENLGGTTETFIQACNVLRSSLGQLNSLVGDSSTADLVPEM 357

Query: 361 QNVAISN 367
           QN+A+++
Sbjct: 358 QNLAVTS 364

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582925|ref|XP_002532234.1| conserved hypothetical protein [Ricinus communis] gi|223528091|gb|EEF30165.1| conserved hypothetical protein [Ricinus communis]

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 242/367 (65%), Positives = 292/367 (79%), Gaps = 3/367 (0%)

Query: 1   MGRKEREKEQLIRTLNNHLNNIHETLQVLNQTAASSLEKVSWNDVIQMGEQVSKKATVVG 60
           MGR E  KE+L + L++HLN IH+T Q+L+QT ASSL+KVSW +V++MG+QVSK+AT+VG
Sbjct: 1   MGRAE--KERLNQILSSHLNTIHDTFQLLDQTPASSLDKVSWEEVVKMGDQVSKQATIVG 58

Query: 61  MLWTGETPEAKAIEENMAEYFNMLQGFILLSHGSTVGAGPTLSLSIHASVKQVVDSSFKL 120
           M+W GE PEAKAIEENMA +FN LQGF+LLSHGS VGAGPTLS  IHASVKQVVD SFKL
Sbjct: 59  MIWVGEKPEAKAIEENMATFFNTLQGFLLLSHGSKVGAGPTLSSCIHASVKQVVDCSFKL 118

Query: 121 MMESITLYAGSDNKDKEHLMPQYVGAVWEACSALKKTPATNITAIGRAMTQVAVSMKDVL 180
           MME++  Y GS NKD + ++PQ  G VWEACSALKKTPATNITAIGRAMTQVAV +KDV+
Sbjct: 119 MMETVPSY-GSSNKDFKLMVPQLTGVVWEACSALKKTPATNITAIGRAMTQVAVLVKDVI 177

Query: 181 REMKELKPSSSDQNNEASHDDSAKADSEHQEDDNSSLDELGNDLSSEEMKVAQLAIGIVS 240
           REMKELKP++S+  +EAS+  S K ++    DDN S D+LGNDLS+EEMKV Q A G+VS
Sbjct: 178 REMKELKPATSNLKDEASNGSSPKEENGLLNDDNLSDDDLGNDLSAEEMKVVQSATGVVS 237

Query: 241 DMLVVIKELIRTITGLLKHENPDDGGKFVDTLERLLKLCQGIGVQIDELGASLYPPQELS 300
           + + VIKELIRTITGLLK E P+D G FVD+LE+LLKL Q I  QIDELGA LYPPQEL 
Sbjct: 238 ETVAVIKELIRTITGLLKQEKPNDTGDFVDSLEKLLKLSQEIVKQIDELGACLYPPQELP 297

Query: 301 VIKAGSVKILSMTDELQKEVESFNSSSEAFIQACNGLRSSLKQMDSEVDCFNTTDLEAKL 360
            IKA    I S+ D++   VESF S  E F QACNGLR S+KQM+ E+D   TT++EAK+
Sbjct: 298 AIKAALKNITSIIDQVLSIVESFKSCPETFFQACNGLRGSIKQMELELDGACTTEIEAKM 357

Query: 361 QNVAISN 367
           Q+VA+S 
Sbjct: 358 QDVALST 364

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434576|ref|XP_004135072.1| PREDICTED: cyclin-D1-binding protein 1 homolog [Cucumis sativus] gi|449493432|ref|XP_004159287.1| PREDICTED: cyclin-D1-binding protein 1 homolog [Cucumis sativus]

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/368 (61%), Positives = 287/368 (77%), Gaps = 5/368 (1%)

Query: 1   MGRKEREKEQLIRTLNNHLNNIHETLQVLNQTAASSLEKVSWNDVIQMGEQVSKKATVVG 60
           MGR +  KE+L+RTLN+HLN IHET Q+L+Q  +SSLEKVSW+DV++MG+QV K+ATV G
Sbjct: 1   MGRAD--KERLVRTLNSHLNTIHETFQMLDQNPSSSLEKVSWDDVLKMGDQVYKQATVAG 58

Query: 61  MLWTGETPEAKAIEENMAEYFNMLQGFILLSHGSTVGAGPTLSLSIHASVKQVVDSSFKL 120
           M+WTGE  E KAIEENMA YFNMLQGF+L+SHGS VGAGPTLS  IHAS+KQ++DSSF+ 
Sbjct: 59  MVWTGERLEVKAIEENMASYFNMLQGFLLVSHGSQVGAGPTLSSVIHASLKQIIDSSFRF 118

Query: 121 MMESITLYAGSDNKDKEHLMPQYVGAVWEACSALKKTPATNITAIGRAMTQVAVSMKDVL 180
             ES++LY    N+DK  ++ Q VGAVW+ACSALKK P+TNITAIGRA+TQVAVS+KDVL
Sbjct: 119 WKESVSLYGPQKNQDKNQVILQLVGAVWDACSALKKAPSTNITAIGRAITQVAVSVKDVL 178

Query: 181 REMKELKPSSSDQNNEASHDDSAKADSEHQEDDNSSLD-ELGNDLSSEEMKVAQLAIGIV 239
           REMKELK  SSD  ++A  +     + + Q++ N+S D ++GNDLS+EEM+VAQ AI +V
Sbjct: 179 REMKELKQGSSDL-DKAPEEICNAVEGDSQDEGNTSDDADIGNDLSAEEMRVAQSAIHVV 237

Query: 240 SDMLVVIKELIRTITGLLKHENPDDGGKFVDTLERLLKLCQGIGVQIDELGASLYPPQEL 299
           S +L+VIKELIR+IT LLK EN +       +LE LLKLCQGIG+Q+DELGA LYPPQE 
Sbjct: 238 SSILLVIKELIRSITSLLKLENANKESNLA-SLENLLKLCQGIGLQVDELGACLYPPQEG 296

Query: 300 SVIKAGSVKILSMTDELQKEVESFNSSSEAFIQACNGLRSSLKQMDSEVDCFNTTDLEAK 359
             IK  S KI S  D +Q E+ S N +SE F+QACN LR SLKQ+++E+  F++ DLE +
Sbjct: 297 PAIKVASEKISSFLDNMQTELGSLNGNSEGFLQACNNLRDSLKQLETELGGFSSPDLETR 356

Query: 360 LQNVAISN 367
           +QNV +SN
Sbjct: 357 MQNVTLSN 364

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574258|ref|XP_003555267.1| PREDICTED: uncharacterized protein LOC100800265 [Glycine max]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/361 (62%), Positives = 280/361 (77%), Gaps = 4/361 (1%)

Query: 7   EKEQLIRTLNNHLNNIHETLQVLNQTA-ASSLEKVSWNDVIQMGEQVSKKATVVGMLWTG 65
           EKE L   L +HL  IHETLQVL+QT  +SS  KV+W+DVI+M EQVSK+AT VGMLWTG
Sbjct: 39  EKEHLNLLLGSHLTTIHETLQVLDQTPPSSSSAKVTWDDVIKMAEQVSKQATTVGMLWTG 98

Query: 66  ETPEAKAIEENMAEYFNMLQGFILLSHGSTVGAGPTLSLSIHASVKQVVDSSFKLMMESI 125
           E P+AKA+EENMA YFN LQGF+LLSHGSTVGAGPTLS ++HASVKQVVDSSF+LM E++
Sbjct: 99  EKPDAKAVEENMASYFNTLQGFLLLSHGSTVGAGPTLSSAVHASVKQVVDSSFRLMKETV 158

Query: 126 TLYAGSDNKDKEHLMPQYVGAVWEACSALKKTPATNITAIGRAMTQVAVSMKDVLREMKE 185
           +LY G  +KD +  +PQ VGAVWEACSALKKTP+TNITAIGR MTQVAVS+KDVLREMKE
Sbjct: 159 SLY-GYHSKDLKISVPQLVGAVWEACSALKKTPSTNITAIGRGMTQVAVSVKDVLREMKE 217

Query: 186 LKP-SSSDQNNEASHDDSAKADSEHQEDDNSSLDELGNDLSSEEMKVAQLAIGIVSDMLV 244
           LKP S  DQ +EA+ +  A+A SE   DDNSS  +LGNDLS EEMKVA+ AI +VS+ L 
Sbjct: 218 LKPVSCDDQVDEAAGESCAEAASE-PHDDNSSEGDLGNDLSPEEMKVAERAIEVVSNTLS 276

Query: 245 VIKELIRTITGLLKHENPDDGGKFVDTLERLLKLCQGIGVQIDELGASLYPPQELSVIKA 304
            IK LI +I GLLK E P+D   FV++LE+LL+LC  +G QIDE+GA LYPPQE+  I A
Sbjct: 277 FIKILIHSIIGLLKLEKPNDNSSFVNSLEKLLQLCHELGRQIDEIGACLYPPQEIPAINA 336

Query: 305 GSVKILSMTDELQKEVESFNSSSEAFIQACNGLRSSLKQMDSEVDCFNTTDLEAKLQNVA 364
              KI S+ D +Q EV     +S+ F++ CN LRSSL+Q+ SE+   +T D+EA+++N+ 
Sbjct: 337 ALEKIHSIIDAVQVEVGELLGASDVFLEPCNDLRSSLRQLASELSNSSTADIEARVENIT 396

Query: 365 I 365
           +
Sbjct: 397 L 397

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108379|ref|XP_002314827.1| predicted protein [Populus trichocarpa] gi|222863867|gb|EEF00998.1| predicted protein [Populus trichocarpa]

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/305 (68%), Positives = 254/305 (83%), Gaps = 1/305 (0%)

Query: 61  MLWTGETPEAKAIEENMAEYFNMLQGFILLSHGSTVGAGPTLSLSIHASVKQVVDSSFKL 120
           MLWTGETPEAKA+EENMA YFN LQG +LLSHGS VGAGPTL+ +IH+S+KQVV+ SFKL
Sbjct: 1   MLWTGETPEAKAVEENMATYFNKLQGLLLLSHGSMVGAGPTLASAIHSSIKQVVECSFKL 60

Query: 121 MMESITLYAGSDNKDKEHLMPQYVGAVWEACSALKKTPATNITAIGRAMTQVAVSMKDVL 180
           MME+++ +AGS NKD + L+PQ VGAVWEAC+ALKKTPA+NITAIGRAMTQVAVS+KDVL
Sbjct: 61  MMETVSSFAGSRNKDLKPLVPQLVGAVWEACTALKKTPASNITAIGRAMTQVAVSVKDVL 120

Query: 181 REMKELKPSSSDQNNEASHDDSAKADSEHQEDDNSSLDELGNDLSSEEMKVAQLAIGIVS 240
           REM+ELKP SS+Q  EAS DD++ A++   ++D+ S D+LGNDLS EEMKVAQ AIG+VS
Sbjct: 121 REMEELKPVSSNQTKEASDDDASHAETRLGDNDSLS-DDLGNDLSPEEMKVAQSAIGVVS 179

Query: 241 DMLVVIKELIRTITGLLKHENPDDGGKFVDTLERLLKLCQGIGVQIDELGASLYPPQELS 300
           + +VVIKELIRTITGLLK E P+D G FVDTLE+LLKLCQ IGVQIDELGA LYPPQE  
Sbjct: 180 ETVVVIKELIRTITGLLKQEKPEDSGNFVDTLEKLLKLCQEIGVQIDELGACLYPPQEFP 239

Query: 301 VIKAGSVKILSMTDELQKEVESFNSSSEAFIQACNGLRSSLKQMDSEVDCFNTTDLEAKL 360
            +KA   KI S  D++Q E+ES  SSSEA  QACN L+ SLKQM++ + C +T+D+E  +
Sbjct: 240 AMKAAFEKISSAIDKVQTEIESLTSSSEAVFQACNDLKRSLKQMEATLGCCSTSDIEFIM 299

Query: 361 QNVAI 365
           QNVA+
Sbjct: 300 QNVAL 304

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819073|emb|CAN69812.1| hypothetical protein VITISV_043108 [Vitis vinifera]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 200/309 (64%), Positives = 245/309 (79%), Gaps = 1/309 (0%)

Query: 59  VGMLWTGETPEAKAIEENMAEYFNMLQGFILLSHGSTVGAGPTLSLSIHASVKQVVDSSF 118
           +GMLWTGE PE  A+E NM  YFNMLQGF+ LSHGSTVGAGPTLS SIHASVKQVVDSSF
Sbjct: 48  IGMLWTGEAPEVSALEGNMEAYFNMLQGFLFLSHGSTVGAGPTLSSSIHASVKQVVDSSF 107

Query: 119 KLMMESITLYAGSDNKDKEHLMPQYVGAVWEACSALKKTPATNITAIGRAMTQVAVSMKD 178
           +L+ ES++ Y GS N+D++  +PQ VGAVWEACS LKKTPATNITAIGR MTQVAVSMKD
Sbjct: 108 RLLKESVSSY-GSRNRDQKLSIPQLVGAVWEACSXLKKTPATNITAIGRTMTQVAVSMKD 166

Query: 179 VLREMKELKPSSSDQNNEASHDDSAKADSEHQEDDNSSLDELGNDLSSEEMKVAQLAIGI 238
           VLREMKELKP+SSD  +E S + S KA+S  + DDNSS  +LGNDLS EEMK+A   I +
Sbjct: 167 VLREMKELKPASSDPTDETSDEASNKAESIPENDDNSSEGDLGNDLSPEEMKIAVSVISV 226

Query: 239 VSDMLVVIKELIRTITGLLKHENPDDGGKFVDTLERLLKLCQGIGVQIDELGASLYPPQE 298
           V+++L VIKELIR ITGL+K E+ +    FVD+LE+LLKLCQGIGVQ+DELGA LYPPQE
Sbjct: 227 VTEILAVIKELIRCITGLVKQEDANKSSNFVDSLEKLLKLCQGIGVQVDELGACLYPPQE 286

Query: 299 LSVIKAGSVKILSMTDELQKEVESFNSSSEAFIQACNGLRSSLKQMDSEVDCFNTTDLEA 358
           +  +KA + KI    DE+Q E+E+   ++E FIQACN LRSSL Q++S V   +T DL  
Sbjct: 287 IPAMKAAAEKISGSVDEIQAEIENLGGTTETFIQACNVLRSSLGQLNSLVGDSSTADLVP 346

Query: 359 KLQNVAISN 367
           ++QN+A+++
Sbjct: 347 EMQNLAVTS 355

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850746|ref|XP_002893254.1| hypothetical protein ARALYDRAFT_472548 [Arabidopsis lyrata subsp. lyrata] gi|297339096|gb|EFH69513.1| hypothetical protein ARALYDRAFT_472548 [Arabidopsis lyrata subsp. lyrata]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/362 (54%), Positives = 264/362 (72%), Gaps = 12/362 (3%)

Query: 7   EKEQLIRTLNNHLNNIHETLQVLNQTAASSLEKVSWNDVIQMGEQVSKKATVVGMLWTGE 66
           +KE L + L   LN I++TLQ+ ++TA+ ++EKV+WNDV+QM + +SK+AT+VGMLWTGE
Sbjct: 5   KKEDLNQFLIPRLNTIYDTLQLFDRTASPTVEKVNWNDVLQMSDHLSKQATIVGMLWTGE 64

Query: 67  TPEAKAIEENMAEYFNMLQGFILLSHGSTVGAGPTLSLSIHASVKQVVDSSFKLMMESIT 126
           +P+A++++E M  YFN LQGF+L  HGSTVGAGPTLS  IH SVKQ+VDSSF+L+  S++
Sbjct: 65  SPKAESLKETMESYFNALQGFLLCCHGSTVGAGPTLSSIIHVSVKQIVDSSFRLLQGSVS 124

Query: 127 LYAGSDNKDKEHLMPQYVGAVWEACSALKKTPATNITAIGRAMTQVAVSMKDVLREMKEL 186
           LY GS  KDK+  +PQ  G VWEACS+ KK PATNI AIGRA+TQVAVSMKDVLREMKE+
Sbjct: 125 LYEGSYEKDKKPSIPQLSGVVWEACSSFKKVPATNIVAIGRAITQVAVSMKDVLREMKEV 184

Query: 187 KPSSSDQNNEASHDDSAKADSEHQEDDNSSLDELGNDLSSEEMKVAQLAIGIVSDMLVVI 246
           KP+      EAS D+ +  D +   DD           S EEM+VA++   IVS+ ++VI
Sbjct: 185 KPACHSAECEASGDNMSGDDDDDLGDDL----------SPEEMEVARMVAEIVSETIMVI 234

Query: 247 KELIRTITGLLKHENPDDGGKFVDTLERLLKLCQGIGVQIDELGASLYPPQELSVIKAGS 306
           KELIR ITG++K ENP+D   FV++LE+LLKLCQG GVQIDELGA +YPPQE++ +K  +
Sbjct: 235 KELIRVITGMIKMENPNDNSGFVESLEKLLKLCQGTGVQIDELGACVYPPQEMNKMKQ-T 293

Query: 307 VKILSMT-DELQKEVESFNSSSEAFIQACNGLRSSLKQMDSEVDCFNTTDLEAKLQNVAI 365
           VKI+    +E + EVE   SSS+    AC  LR+SLK M++E+D     +L  ++QNV +
Sbjct: 294 VKIIQGNLNEFETEVERLKSSSDGCSGACEKLRNSLKHMETELDKRCEAELVVEMQNVTL 353

Query: 366 SN 367
            N
Sbjct: 354 GN 355

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219987|ref|NP_173710.1| uncharacterized protein [Arabidopsis thaliana] gi|2462829|gb|AAB72164.1| unknown [Arabidopsis thaliana] gi|17979268|gb|AAL49950.1| At1g22970/F19G10_8 [Arabidopsis thaliana] gi|21700855|gb|AAM70551.1| At1g22970/F19G10_8 [Arabidopsis thaliana] gi|332192195|gb|AEE30316.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/359 (54%), Positives = 257/359 (71%), Gaps = 8/359 (2%)

Query: 7   EKEQLIRTLNNHLNNIHETLQVLNQTAASSLEKVSWNDVIQMGEQVSKKATVVGMLWTGE 66
           +KE L + L   LN I+ETLQ+ + TA+ ++E+V+WNDV+QM + +SK+AT+VGMLWTGE
Sbjct: 5   KKEDLNQFLIPRLNTIYETLQLFDGTASPTVERVNWNDVLQMSDHLSKQATIVGMLWTGE 64

Query: 67  TPEAKAIEENMAEYFNMLQGFILLSHGSTVGAGPTLSLSIHASVKQVVDSSFKLMMESIT 126
           +P+A +++E M  YFN LQGF+L  HGST+GAGPTLS  IH SVKQ+VDSSF+L+  S++
Sbjct: 65  SPKADSLKETMESYFNALQGFLLCCHGSTLGAGPTLSSIIHVSVKQIVDSSFRLLQGSVS 124

Query: 127 LYAGSDNKDKEHLMPQYVGAVWEACSALKKTPATNITAIGRAMTQVAVSMKDVLREMKEL 186
           LY GS  KDK+  +PQ  G VWEACS+ KK PATNITAIGRA+TQVAVSMKDVLREMKE+
Sbjct: 125 LYEGSYEKDKKPSIPQLSGVVWEACSSFKKVPATNITAIGRAITQVAVSMKDVLREMKEV 184

Query: 187 KPSSSDQNNEASHDDSAKADSEHQEDDNSSLDELGNDLSSEEMKVAQLAIGIVSDMLVVI 246
           KP+      EAS D+ +  D +  +  +          S EEM+VA +   IVS+ ++VI
Sbjct: 185 KPACPLSECEASGDNMSSDDDDDDDLGDDL--------SPEEMEVATMVTEIVSETIMVI 236

Query: 247 KELIRTITGLLKHENPDDGGKFVDTLERLLKLCQGIGVQIDELGASLYPPQELSVIKAGS 306
           KELIR ITG++K ENP D   FV++LE+LLKLCQG GVQIDELGA +YPPQE++ +K   
Sbjct: 237 KELIRVITGMIKMENPKDNSGFVESLEKLLKLCQGTGVQIDELGACVYPPQEMNKMKQTV 296

Query: 307 VKILSMTDELQKEVESFNSSSEAFIQACNGLRSSLKQMDSEVDCFNTTDLEAKLQNVAI 365
             I    DE + EVE   SSS+ F  AC  LR+SLK M++E+D     +L  ++QNV +
Sbjct: 297 KVIQGNLDEFETEVERLKSSSDGFSGACGKLRNSLKHMETELDKRCEAELVVEMQNVTL 355

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838941|ref|XP_002887352.1| hypothetical protein ARALYDRAFT_476247 [Arabidopsis lyrata subsp. lyrata] gi|297333193|gb|EFH63611.1| hypothetical protein ARALYDRAFT_476247 [Arabidopsis lyrata subsp. lyrata]

 Score =  363 bits (931), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 191/358 (53%), Positives = 257/358 (71%), Gaps = 6/358 (1%)

Query: 7   EKEQLIRTLNNHLNNIHETLQVLNQTAASSLEKVSWNDVIQMGEQVSKKATVVGMLWTGE 66
           ++++L + L ++ N I++TLQ+  Q  + + +KVSWNDV+Q+ + +SK+AT+VGMLWTGE
Sbjct: 5   KRDELNQILTSYHNTINDTLQLFEQVPSPTQDKVSWNDVLQISDHLSKQATIVGMLWTGE 64

Query: 67  TPEAKAIEENMAEYFNMLQGFILLSHGSTVGAGPTLSLSIHASVKQVVDSSFKLMMESIT 126
            P+++A++E M  YFN+LQGF+L  HGS VGAG TLS SIHAS KQ+VDSSF+L+  S++
Sbjct: 65  PPKSEALKETMEAYFNVLQGFLLHCHGSMVGAGTTLSSSIHASAKQIVDSSFRLLQGSVS 124

Query: 127 LYAGSDNKDKEHLMPQYVGAVWEACSALKKTPATNITAIGRAMTQVAVSMKDVLREMKEL 186
           LY GS    ++  +PQ  GAVWEACS LKK P TNI AIGRAM  VAVSMKDVLREMKEL
Sbjct: 125 LYEGSYGNGRKPSIPQLAGAVWEACSNLKKVPETNIKAIGRAMAHVAVSMKDVLREMKEL 184

Query: 187 KPSSSDQNNEASHDDSAKADSEHQEDDNSSLDELGNDLSSEEMKVAQLAIGIVSDMLVVI 246
           KP+ S       HD S   +SE Q + +   D LG+DLS EE +VA++ + IVS+ LVVI
Sbjct: 185 KPACSS----PEHDASENLESETQ-NSDEDDDGLGDDLSPEEFEVAKMVVDIVSETLVVI 239

Query: 247 KELIRTITGLLKHENPDDGGKFVDTLERLLKLCQGIGVQIDELGASLYPPQELSVIKAGS 306
           KELIR  TG++K ENP+D  +FVD+LE+LLKLCQGIGVQIDELGA +YPPQE  ++K   
Sbjct: 240 KELIRAFTGMIKLENPNDNSEFVDSLEKLLKLCQGIGVQIDELGACVYPPQEFGLMKQTV 299

Query: 307 VKILSMTDELQKEVESF-NSSSEAFIQACNGLRSSLKQMDSEVDCFNTTDLEAKLQNV 363
            KI     E++  V+SF N SSEA   +C  L+  ++ M++E+      ++  K+QNV
Sbjct: 300 EKIWETIGEIETGVKSFENFSSEALSGSCRRLQGLIEHMETELGTRIEAEVVCKMQNV 357

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	367
TAIR|locus:2017739	357	AT1G22970 [Arabidopsis thalian	0.959	0.985	0.560	1.7e-100
TAIR|locus:2026321	351	AT1G71150 "AT1G71150" [Arabido	0.934	0.977	0.518	5.9e-89
TAIR|locus:2017724	359	AT1G22980 "AT1G22980" [Arabido	0.542	0.554	0.497	9.8e-70
UNIPROTKB|O95273	360	CCNDBP1 "Cyclin-D1-binding pro	0.822	0.838	0.216	9.4e-08
ZFIN|ZDB-GENE-070410-17	344	zgc:162082 "zgc:162082" [Danio	0.730	0.779	0.195	2.5e-06
RGD|1304669	355	Ccndbp1 "cyclin D-type binding	0.787	0.814	0.229	3.5e-05
UNIPROTKB|E2QTY6	360	CCNDBP1 "Uncharacterized prote	0.713	0.727	0.220	3.6e-05
UNIPROTKB|F6UX67	404	CCNDBP1 "Uncharacterized prote	0.713	0.648	0.220	4.5e-05
UNIPROTKB|F1NFC4	353	CCNDBP1 "Uncharacterized prote	0.482	0.501	0.214	0.00016
MGI|MGI:109595	356	Ccndbp1 "cyclin D-type binding	0.792	0.817	0.214	0.00017

TAIR|locus:2017739 AT1G22970 [Arabidopsis thaliana (taxid:3702)]

 Score = 997 (356.0 bits), Expect = 1.7e-100, P = 1.7e-100
 Identities = 203/362 (56%), Positives = 269/362 (74%)

Query:     7 EKEQLIRTLNNHLNNIHETLQVLNQTAASSLEKVSWNDVIQMGEQVSKKATVVGMLWTGE 66
             +KE L + L   LN I+ETLQ+ + TA+ ++E+V+WNDV+QM + +SK+AT+VGMLWTGE
Sbjct:     5 KKEDLNQFLIPRLNTIYETLQLFDGTASPTVERVNWNDVLQMSDHLSKQATIVGMLWTGE 64

Query:    67 TPEAKAIEENMAEYFNMLQGFILLSHGSTVGAGPTLSLSIHASVKQVVDSSFKLMMESIT 126
             +P+A +++E M  YFN LQGF+L  HGST+GAGPTLS  IH SVKQ+VDSSF+L+  S++
Sbjct:    65 SPKADSLKETMESYFNALQGFLLCCHGSTLGAGPTLSSIIHVSVKQIVDSSFRLLQGSVS 124

Query:   127 LYAGSDNKDKEHLMPQYVGAVWEACSALKKTPATNITAIGRAMTQVAVSMKDVLREMKEL 186
             LY GS  KDK+  +PQ  G VWEACS+ KK PATNITAIGRA+TQVAVSMKDVLREMKE+
Sbjct:   125 LYEGSYEKDKKPSIPQLSGVVWEACSSFKKVPATNITAIGRAITQVAVSMKDVLREMKEV 184

Query:   187 KPSSSDQNNEASHDDSAKADSEHQEDDNSSLDELGNDLSSEEMKVAQLAIGIVSDMLVVI 246
             KP+      EAS D+ +  D    +DD    D+LG+DLS EEM+VA +   IVS+ ++VI
Sbjct:   185 KPACPLSECEASGDNMSSDD----DDD----DDLGDDLSPEEMEVATMVTEIVSETIMVI 236

Query:   247 KELIRTITGLLKHENPDDGGKFVDTLERLLKLCQGIGVQIDELGASLYPPQELSVIKAGS 306
             KELIR ITG++K ENP D   FV++LE+LLKLCQG GVQIDELGA +YPPQE++ +K  +
Sbjct:   237 KELIRVITGMIKMENPKDNSGFVESLEKLLKLCQGTGVQIDELGACVYPPQEMNKMKQ-T 295

Query:   307 VKILSMT-DELQKEVESFNSSSEAFIQACNGLRSSLKQMDSEVDCFNTTDLEAKLQNVAI 365
             VK++    DE + EVE   SSS+ F  AC  LR+SLK M++E+D     +L  ++QNV +
Sbjct:   296 VKVIQGNLDEFETEVERLKSSSDGFSGACGKLRNSLKHMETELDKRCEAELVVEMQNVTL 355

Query:   366 SN 367
              +
Sbjct:   356 DS 357

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2026321 AT1G71150 "AT1G71150" [Arabidopsis thaliana (taxid:3702)]

 Score = 888 (317.7 bits), Expect = 5.9e-89, P = 5.9e-89
 Identities = 186/359 (51%), Positives = 250/359 (69%)

Query:     9 EQLIRTLNNHLNNIHETLQVLNQTAASSLEKVSWNDVIQMGEQVSKKATVVGMLW-TGET 67
             ++L + L ++ N I++TLQ+  Q  + + +K+ WNDV+Q+ + +SK+AT+VGMLW TGE 
Sbjct:     7 DELNQILTSYQNTINDTLQLFEQVPSPTQDKLYWNDVLQISDHLSKQATIVGMLWITGEP 66

Query:    68 PEAKAIEENMAEYFNMLQGFILLSHGSTVGAGPTLSLSIHASVKQVVDSSFKLMMESITL 127
             P+A+A++E M  YFN LQGF+L  HGS VGAG TLS +IHASVKQ+VDSSF+L+  S++L
Sbjct:    67 PKAEAMKETMEAYFNALQGFLLHCHGSMVGAGTTLSSTIHASVKQIVDSSFRLLQGSVSL 126

Query:   128 YAGSDNKDKEHLMPQYVGAVWEACSALKKTPATNITAIGRAMTQVAVSMKDVLREMKELK 187
             Y GS  K ++  +PQ  GAVWEACS LK  P TNI AIGRAM  VAVSMKDVLREMKELK
Sbjct:   127 YEGSYEKGRKPTIPQLAGAVWEACSNLKNVPETNIKAIGRAMAHVAVSMKDVLREMKELK 186

Query:   188 PSSSDQNNEASHDDSAKADSEHQEDDNSSLDELGNDLSSEEMKVAQLAIGIVSDMLVVIK 247
             P+SS                +H    NS  D+LG++LS EE +VA++   IVS+ LVVIK
Sbjct:   187 PASSSP--------------DHNVSTNSDDDDLGDELSPEEFEVAKMVADIVSETLVVIK 232

Query:   248 ELIRTITGLLKHENPDDGGKFVDTLERLLKLCQGIGVQIDELGASLYPPQELSVIKAGSV 307
             ELIR IT ++K ENP D  +FVD+ E+LLKLCQGIGVQIDELGA +YPPQE  ++K    
Sbjct:   233 ELIRAITCMIKLENPKDNSEFVDSFEKLLKLCQGIGVQIDELGACVYPPQEFGLMKQTVE 292

Query:   308 KILSMTDELQKEVESF-NSSSEAFIQACNGLRSSLKQMDSEVDCFNTTDLEAKLQNVAI 365
              +     E++ +V+S  NSSSEA   +C  L+S ++ M +E+D     ++  K+QNV +
Sbjct:   293 NMRESIGEIESDVKSSKNSSSEALSGSCRRLQSLIEHMVTELDTRIEAEVVYKMQNVTL 351

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2017724 AT1G22980 "AT1G22980" [Arabidopsis thaliana (taxid:3702)]

 Score = 501 (181.4 bits), Expect = 9.8e-70, Sum P(2) = 9.8e-70
 Identities = 100/201 (49%), Positives = 142/201 (70%)

Query:     1 MGRKEREKEQLIRTLNNHLNNIHETLQVLNQTAASSLEKVSWNDVIQMGEQVSKKATVVG 60
             MG+ +  K+ L ++L  H +   +TLQ+ + T++ + EKV+WN+V+ + + +SK+AT V 
Sbjct:     1 MGKSK--KKVLNKSLITHPSTSDDTLQLFDPTSSPTKEKVNWNNVLGISDYLSKQATRVK 58

Query:    61 MLWTGETPEAKAIEENMAEYFNMLQGFILLSHGSTVGAGPTLSLSIHASVKQVVDSSFKL 120
              LWTGETP+A++++E M  YF  L GF+L  HGST+GAGPTLS  +H SVKQ+VDSSF+L
Sbjct:    59 TLWTGETPKAESVKETMESYFKALLGFLLCCHGSTLGAGPTLSSIVHGSVKQIVDSSFRL 118

Query:   121 MMESITLYAGSDNKDKEHLMPQYVGAVWEACSALKKTPATNITAIGRAMTQVAVSMKDVL 180
                S++LY GS  K ++  + Q  GAV EACS+ KK P TN+ AIG A++QV+V MKDVL
Sbjct:   119 FQGSVSLYDGSYEKGEKPSISQLSGAVLEACSSFKKVPTTNLIAIGSAISQVSVIMKDVL 178

Query:   181 REMKELKPSSSDQNNEASHDD 201
              EMK++KP+      EAS DD
Sbjct:   179 NEMKKVKPACPSSEGEASGDD 199

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|O95273 CCNDBP1 "Cyclin-D1-binding protein 1" [Homo sapiens (taxid:9606)]

 Score = 149 (57.5 bits), Expect = 9.4e-08, P = 9.4e-08
 Identities = 70/323 (21%), Positives = 140/323 (43%)

Query:     9 EQLIRTLNNHLNNIHETLQV--LNQTAASSLEKVSWNDVIQMGEQVSKKATVVGMLWTG- 65
             EQL R L   L  +   ++V    +T      ++ W  + +    VS++AT + ++++  
Sbjct:    19 EQL-RHLAEELRLLLPRVRVGEAQETTEEFNREMFWRRLNEAAVTVSREATTLTIVFSQL 77

Query:    66 ETPEAKAIEENMAEYFNMLQGFILLSHGSTVGAGPTLSLSIHASVKQVVDSSFKLM-MES 124
               P  +  ++   +    ++ FI + +      G TL   +  +   +VD   +LM + S
Sbjct:    78 PLPSPQETQKFCEQVHAAIKAFIAVYYLLPKDQGITLRKLVRGATLDIVDGMAQLMEVLS 137

Query:   125 ITLYAGSDNKDKEHLMPQYVGAVWEACSALKKTPATNITAIGRAMTQVAVSMKDVLREMK 184
             +T     +N D    +  Y  +VW AC  + + P  N  A    +T+    +KD   EM+
Sbjct:   138 VTPTQSPENND----LISY-NSVWVACQQMPQIPRDNKAAALLMLTKNVDFVKDAHEEME 192

Query:   185 ELKPSSSDQNNEASHDDSAKADSEHQEDDNSSLDELGNDLS-SEEMKVAQLAIGIVSDML 243
             +        +   +  +   +D+ + EDD         DL  SE+ +  +L I  ++ ++
Sbjct:   193 QAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPS-NQDLYWSEDDQ--ELIIPCLA-LV 248

Query:   244 VVIKELIRTITGLLKHENPDDGGKFVDTLERLLKLCQGIGVQIDELGASLYPPQELSVIK 303
                K  ++ I  L+      D    V  L+ ++ +   I   +D+L  S+YPP     ++
Sbjct:   249 RASKACLKKIRMLVAENGKKDQ---VAQLDDIVDISDEISPSVDDLALSIYPPMCHLTVR 305

Query:   304 AGSVKILSMTDELQKEVESFNSS 326
               S K++S+   L+K +E   +S
Sbjct:   306 INSAKLVSV---LKKALEITKAS 325

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-070410-17 zgc:162082 "zgc:162082" [Danio rerio (taxid:7955)]

 Score = 136 (52.9 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 57/292 (19%), Positives = 124/292 (42%)

Query:    42 WNDVIQMGEQVSKKATVVGMLWTGETPEAKAIEENMAEYFNMLQGFIL----LSHGSTVG 97
             W  + +  + VS++AT + ++++   P   + +E+ A+    +Q  +L    +       
Sbjct:    46 WEILNEAVKAVSQEATKLSLMFS--KPPLPS-DEDCAKMGECVQKSVLTLCTVYFWLPKS 102

Query:    98 AGPTLSLSIHASVKQVVDSSFKLMMESITLYAGSDNKDKEHLMPQYVGAVWEACSALKKT 157
              G TL  S+  +  +V++   +L+   + L +   +  +E L     G+VW AC    + 
Sbjct:   103 QGVTLRRSVRDATAEVLEGLVQLL--DVILSSPGQSLSQEQLTS--TGSVWAACDHFDQI 158

Query:   158 PATNITAIGRAMTQVAVSMKDVLREMKELKPSSSDQNNEASHDDSAKADSEHQEDDNSSL 217
             P  N +A+   ++     +KD L EM++    S D   +   DD         +DD    
Sbjct:   159 PKDNRSAVLAVLSSCVGLVKDALEEMQQALAESQDPFGDVLDDD---------DDDEGGR 209

Query:   218 DELGNDLSSEEMKVAQLAIGIVSDMLVVIKELIRTITGLLKHENPDDGGKFVDTLERLLK 277
                    S+ + ++    IG    +L      +R ++  ++H    +  + +  L+ L  
Sbjct:   210 GNQDRYWSASDRQL----IGQCEGLLKASAASLRKLSSAVRHNAQLETEQEIAQLDDLAD 265

Query:   278 LCQGIGVQIDELGASLYPPQELSVIKAGSVKILSMTDELQKEVESFNSSSEA 329
                 +   +D+L  SLYPP + + ++    ++ ++  +L     S +  +EA
Sbjct:   266 AAAHVSPCVDDLALSLYPPVDRAAVEQNVCRLAAVLKKLLDITRSSHVCAEA 317

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

RGD|1304669 Ccndbp1 "cyclin D-type binding-protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 126 (49.4 bits), Expect = 3.5e-05, P = 3.5e-05
 Identities = 71/309 (22%), Positives = 136/309 (44%)

Query:     9 EQLIRTLNNHLNNIHETLQV--LNQTAASSLEKVSWNDVIQMGEQVSKKATVVGMLWTGE 66
             EQL R L   L ++   ++V    +TA     ++ W  + +   +VS +ATV+  L++ +
Sbjct:    16 EQL-RHLAEELRSLLPRVRVGEAQETAEEFNREMFWRRLNEAAMKVSGEATVLTTLFS-K 73

Query:    67 TPEAKAIE-ENMAEYFNMLQGFILLSHGS-TVGAGPTLSLSIHASVKQVVDSSFKLMMES 124
              P     E + + E  ++    ++ ++ +     G TL   +  +V  +VD + +L+ ++
Sbjct:    74 IPSPSPQETQRICEQVHIATEEVIAAYYTFPKDQGITLRKLVRNAVLDIVDGTAQLL-DA 132

Query:   125 ITLYAGSDNKDKEHLMPQYVGAVWEACSALKKTPATNITAIGRAMTQVAVSMKDVLREMK 184
             + L A S + +   L+     +V  AC  + + P  N  A    +T+    +KD   EM+
Sbjct:   133 L-LAAPSQSPENGDLIS--CNSVSVACQQVAEIPKDNKAAALLMLTKSVDLVKDAHEEME 189

Query:   185 ELKPSSSDQNNEASHDDSAKADSEHQEDDNSSLDELGNDLSSEEMKVAQLAIGIVSDMLV 244
             +      D       D    +DS H ED         +  S E+  +    + +V     
Sbjct:   190 QAV-EECDPYCGLLDDSEDNSDSHHNEDGVGLPSNRDSYWSEEDQALITPCLALVRASRA 248

Query:   245 VIKELIRTITGLLKHENPDDGGKF-VDTLERLLKLCQGIGVQIDELGASLYPPQELSVIK 303
              +K+ IR    +L  EN   G K  V  L+ ++ +   I   +D+L  S+YPP     ++
Sbjct:   249 SLKK-IR----ILVAEN---GRKDQVAQLDDIVDISDEISPSVDDLVLSVYPPVCHLTVR 300

Query:   304 AGSVKILSM 312
               S K++S+
Sbjct:   301 ITSAKLVSV 309

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IEA

UNIPROTKB|E2QTY6 CCNDBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 126 (49.4 bits), Expect = 3.6e-05, P = 3.6e-05
 Identities = 63/286 (22%), Positives = 122/286 (42%)

Query:    42 WNDVIQMGEQVSKKATVVGMLWTG-ETPEAKAIEENMAEYFNMLQGFILLSHGSTVGAGP 100
             W  + +  E VS++AT +  +++    P  +  +    +    ++  I + +      G 
Sbjct:    53 WRRLNRAAENVSREATTLTEVFSRVPLPSPQETQRFCEQIHTAIKEIITVYYSLPKDQGI 112

Query:   101 TLSLSIHASVKQVVDSSFKLM-MESITLYAGSDNKDKEHLMPQYVGAVWEACSALKKTPA 159
             TL   +  +   +VD   +L+ +  IT     +N D    +  Y  +VW AC  + + P 
Sbjct:   113 TLRKLVRNATLDIVDGMAQLVDVLFITPAQSLENSD----LISY-NSVWTACQQVPRIPK 167

Query:   160 TNITAIGRAMTQVAVSMKDVLREMKELKPSSSDQNNEASHDDSAKADSEHQEDDNSSLDE 219
              N  A    +T+    +KD   EM++      D      +D    +D+   E+ N  L  
Sbjct:   168 DNKAAALSMLTKNVDFVKDAHEEMEQAV-EECDPYCGLLNDTEDNSDNNGDEE-NDGLGY 225

Query:   220 LGN-DL--SSEEMKVAQLAIGIVSDMLVVIKELIRTITGLLKHENPDDGGKF-VDTLERL 275
               N DL  S E+ ++    + +V      +K++  ++      EN   G K  V  L+ +
Sbjct:   226 PNNRDLYWSEEDQELIIPCLALVRASKACLKKIRISVA-----EN---GKKDQVAQLDDI 277

Query:   276 LKLCQGIGVQIDELGASLYPPQELSVIKAGSVKILSMTDELQKEVE 321
             + +   I   +D+L  S+YPP     ++  S K++S+   L+K +E
Sbjct:   278 VDISDEISPSVDDLALSIYPPMCHLTVRINSAKLVSV---LKKALE 320

GO:0051726 "regulation of cell cycle" evidence=IEA

UNIPROTKB|F6UX67 CCNDBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 126 (49.4 bits), Expect = 4.5e-05, P = 4.5e-05
 Identities = 63/286 (22%), Positives = 122/286 (42%)

Query:    42 WNDVIQMGEQVSKKATVVGMLWTG-ETPEAKAIEENMAEYFNMLQGFILLSHGSTVGAGP 100
             W  + +  E VS++AT +  +++    P  +  +    +    ++  I + +      G 
Sbjct:    53 WRRLNRAAENVSREATTLTEVFSRVPLPSPQETQRFCEQIHTAIKEIITVYYSLPKDQGI 112

Query:   101 TLSLSIHASVKQVVDSSFKLM-MESITLYAGSDNKDKEHLMPQYVGAVWEACSALKKTPA 159
             TL   +  +   +VD   +L+ +  IT     +N D    +  Y  +VW AC  + + P 
Sbjct:   113 TLRKLVRNATLDIVDGMAQLVDVLFITPAQSLENSD----LISY-NSVWTACQQVPRIPK 167

Query:   160 TNITAIGRAMTQVAVSMKDVLREMKELKPSSSDQNNEASHDDSAKADSEHQEDDNSSLDE 219
              N  A    +T+    +KD   EM++      D      +D    +D+   E+ N  L  
Sbjct:   168 DNKAAALSMLTKNVDFVKDAHEEMEQAV-EECDPYCGLLNDTEDNSDNNGDEE-NDGLGY 225

Query:   220 LGN-DL--SSEEMKVAQLAIGIVSDMLVVIKELIRTITGLLKHENPDDGGKF-VDTLERL 275
               N DL  S E+ ++    + +V      +K++  ++      EN   G K  V  L+ +
Sbjct:   226 PNNRDLYWSEEDQELIIPCLALVRASKACLKKIRISVA-----EN---GKKDQVAQLDDI 277

Query:   276 LKLCQGIGVQIDELGASLYPPQELSVIKAGSVKILSMTDELQKEVE 321
             + +   I   +D+L  S+YPP     ++  S K++S+   L+K +E
Sbjct:   278 VDISDEISPSVDDLALSIYPPMCHLTVRINSAKLVSV---LKKALE 320

GO:0051726 "regulation of cell cycle" evidence=IEA

UNIPROTKB|F1NFC4 CCNDBP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 120 (47.3 bits), Expect = 0.00016, P = 0.00016
 Identities = 42/196 (21%), Positives = 79/196 (40%)

Query:   145 GAVWEACSALKKTP-ATNITAIGRAMTQVAVSMKDVLREMKELKPSSSDQNNEASHDDSA 203
             G VWEAC  +   P A N  A+  A++     +KD + EM+       D  ++   D+  
Sbjct:   156 GGVWEACEQVSSLPRADNQAAVVSALSAFLGVVKDAVEEMENALVEEQDPYSDIIEDEEL 215

Query:   204 KADSEHQEDDNSSLDELGNDLSSEEMKVAQLAIGIVSDMLVVIKELIRTITGLLKHENPD 263
                         + D      S  + K+    +G++      +K+++  +    K ++P+
Sbjct:   216 GF--------RGNRDTYW---SEADRKLLGSCMGLMKASKACLKKVLSVVKAYGKADSPE 264

Query:   264 DGGKFVDTLERLLKLCQGIGVQIDELGASLYPPQELSVIKAGSVKILSMTD---ELQKEV 320
                  +  L+ L  +   I   +DEL  S+YPP     ++  + K+ S+     E+ K  
Sbjct:   265 Q----IAQLDDLADIANEISPSVDELALSMYPPMNHLAVRLNAAKLASVLKKVLEITKTS 320

Query:   321 ESFNSSSEAFIQACNG 336
                  S E ++Q   G
Sbjct:   321 HVCPPSEEGWVQFLTG 336

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:109595 Ccndbp1 "cyclin D-type binding-protein 1" [Mus musculus (taxid:10090)]

 Score = 120 (47.3 bits), Expect = 0.00017, P = 0.00017
 Identities = 66/308 (21%), Positives = 133/308 (43%)

Query:     9 EQLIRTLNNHLNNIHETLQV--LNQTAASSLEKVSWNDVIQMGEQVSKKATVVGMLWTGE 66
             EQL R L   L ++   ++V    +TA     ++ W  + +   +V+ +ATV+   ++ +
Sbjct:    16 EQL-RHLAEELRSLLPRVRVGEAQETAEEFNREMFWRRLNEAAVKVNGEATVLTTHFS-K 73

Query:    67 TPEAKAIE-ENMAEYFNM-LQGFILLSHGSTVGAGPTLSLSIHASVKQVVDSSFKLMMES 124
              P     E + + E   + ++  I++ +      G TL   +  +   +VD   +L+   
Sbjct:    74 LPWPSPQETQRICEQVRIAIEEIIIVYYSLPKDQGITLRKLVRNAALDIVDGMAQLL--E 131

Query:   125 ITLYAGSDNKDKEHLMPQYVGAVWEACSALKKTPATNITAIGRAMTQVAVSMKDVLREMK 184
             + L A S + +   L+     +V  AC  + + P  N  A    +T+    +KD   EM+
Sbjct:   132 VLLTAPSQSTENGDLIS--CNSVSVACQQVPEIPKDNKAAALLMLTKSVDFVKDAHEEME 189

Query:   185 ELKPSSSDQNNEASHDDSAKADSEHQEDDNSSLDELGNDLSSEEMKVAQLAIGIVSDMLV 244
             +      D  +   +D    +DS   ED    L    +   SEE +  +L I  ++ ++ 
Sbjct:   190 QAV-EECDPYSGLLNDSEDNSDSHSDEDGVLGLPSNRDSYWSEEDQ--ELIIPCLA-LVR 245

Query:   245 VIKELIRTITGLLKHENPDDGGKFVDTLERLLKLCQGIGVQIDELGASLYPPQELSVIKA 304
               +  ++ I  L+      D    V  L+ ++ +   I   +D+L  S+YPP     ++ 
Sbjct:   246 ASRASLKKIRILVAENGKKDE---VAQLDDIVDISDEISPSVDDLVLSIYPPVCHLTVRI 302

Query:   305 GSVKILSM 312
              S K++S+
Sbjct:   303 SSAKLVSV 310

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0010054201 hypothetical protein (362 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	367
pfam13324	271	pfam13324, GCIP, Grap2 and cyclin-D-interacting	1e-113

>gnl|CDD|222046 pfam13324, GCIP, Grap2 and cyclin-D-interacting

 Score =  331 bits (850), Expect = e-113
 Identities = 144/282 (51%), Positives = 193/282 (68%), Gaps = 14/282 (4%)

Query: 42  WNDVIQMGEQVSKKATVVGMLW-TGETPEAKAIEENMAEYFNMLQGFILLSHGSTVGAGP 100
           W +V +  +QVSK+AT++GMLW  G  P A+ ++ENM  YFN LQGF+L+ HGS VGAGP
Sbjct: 1   WEEVNKAADQVSKQATILGMLWSKGPLPSAEELKENMETYFNALQGFLLVCHGSPVGAGP 60

Query: 101 TLSLSIHASVKQVVDSSFKLMMESITLYAGSDNKDKEHLMPQYVGAVWEACSALKKTPAT 160
           TLS +I  +VKQVVD SF+L+  +++LY GS ++ ++  +PQ  G+VWEAC ALKK P T
Sbjct: 61  TLSKTIRGAVKQVVDGSFQLLQVAVSLY-GSRSQSRKQAIPQLTGSVWEACDALKKVPKT 119

Query: 161 NITAIGRAMTQVAVSMKDVLREMKELKPSSSDQNNEASHDDSAKADSEHQEDDNSSLDEL 220
           NI AIGRA+TQVAVS+KDVLREMKE K   S+ ++E    D       H +DD+   D+L
Sbjct: 120 NIAAIGRALTQVAVSVKDVLREMKEAKEGCSNDDSEDPFSDG------HHDDDDVEGDDL 173

Query: 221 GND--LSSEEMKVAQLAIGIVSDMLVVIKELIRTITGLLKHENPDDGGKFVDTLERLLKL 278
            +D   S EEM+VA+  +G+VS  L V+KELIR ITG    +N D    FV  LE+LL L
Sbjct: 174 NDDRYWSEEEMEVAKPCLGLVSASLAVLKELIRAITGNGPGDNED----FVAQLEKLLDL 229

Query: 279 CQGIGVQIDELGASLYPPQELSVIKAGSVKILSMTDELQKEV 320
           CQ I  Q+DELGAS+YPPQE + +K    K+ S+  ++ + V
Sbjct: 230 CQEISPQVDELGASVYPPQEHATVKQNVKKLSSVLKKVLEIV 271

GCIP, or Grap2 and cyclin-D-interacting protein, is found in eukaryotes, and in the human protein CCNDBP1, residues 149-190 constitute a helix-loop-helix domain, residues 190-240 an acidic region, and 240-261 a leucine zipper domain. GCIP interacts with full-length Grap2 protein and with the COOH-terminal unique and SH3 domains (designated QC domain) of Grap2. It is potentially involved in the regulation of cell differentiation and proliferation through Grap2 and cyclin D-mediated signalling pathways. In mice, it is involved in G1/S-phase progression of hepatocytes, which in older animals is associated with the development of liver tumours. In vitro it acts as an inhibitory HLH protein, for example, blocking transcription of the HNF-4 promoter. In its function as a cyclin D1-binding protein it is able to reduce CDK4-mediated phosphorylation of the retinoblastoma protein and to inhibit E2F-mediated transcriptional activity. GCIP has also been shown to have interact physically with Rad (Ras associated with diabetes), Rad being important in regulating cellular senescence. Length = 271

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	367
PF13324	275	GCIP: Grap2 and cyclin-D-interacting; PDB: 3AY5_A.	100.0

>PF13324 GCIP: Grap2 and cyclin-D-interacting; PDB: 3AY5_A

Probab=100.00  E-value=2.5e-59  Score=449.55  Aligned_cols=273  Identities=36%  Similarity=0.604  Sum_probs=202.1

Q ss_pred             HHHHHHHHHHHHhhhhhhhhcccCCC-CCHHHHHHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 017703           42 WNDVIQMGEQVSKKATVVGMLWTGET-PEAKAIEENMAEYFNMLQGFILLSHGSTVGAGPTLSLSIHASVKQVVDSSFKL  120 (367)
Q Consensus        42 ~~~l~~~a~~l~~~aTKlsll~~~~P-ps~~~~~~~~~~l~~~l~~~~~l~~~~~~g~g~tl~~~i~~~~~~vv~~~~~L  120 (367)
                      |++|.+++++||+||||+||+|++.| |++++++++|+++++++++|+++||+.++|+|+||+++|+..+++||+++.+|
T Consensus         1 w~~l~~~~~~~s~~aTkl~l~~~~~~~P~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~G~tL~~~i~~~v~~lv~~~~~L   80 (275)
T PF13324_consen    1 WEELVKAAKALSHEATKLSLVFSKPPLPSPEEAQELCESLFNALLGLLSLYHGLPKGQGPTLRKEIRSAVKSLVDSSIQL   80 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSSS---HHHHHHHHHHHHHHHHHHHHHHTTS-GGG-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCcHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999996333 88999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCcccccCcccchhhhHHHhhhhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccccCC
Q 017703          121 MMESITLYAGSDNKDKEHLMPQYVGAVWEACSALKKTPATNITAIGRAMTQVAVSMKDVLREMKELKPSSSDQNNEASHD  200 (367)
Q Consensus       121 ~~~l~~~~~~s~~~~~~~~~l~stG~VWeaCD~l~~lp~~N~~av~~~~~~~~~lvkDaleEleE~~e~~~~~~~e~s~d  200 (367)
                      ++++++.+ ++.++++++.++++||+||+|||++.++|++|++||+|+|++++++||||++||+||.+++...+++   |
T Consensus        81 ~~~~~~~~-~s~~~~~~~~~~~~tG~VWeaCd~l~~lp~~n~~av~~~~~~~~~lvkDa~~El~E~~~~~~~~~~~---d  156 (275)
T PF13324_consen   81 VEELVSAY-GSSSQSEKNEVLQSTGRVWEACDQLKKLPKDNKVAVLRRLKQSRDLVKDALEELEEWDEEPSLDDSE---D  156 (275)
T ss_dssp             HHHHH--------------------HHHHHHHTTTTS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----------
T ss_pred             HHHHHHhc-cCcccCccchhHHHHhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC---C
Confidence            99999976 6677788899999999999999999999999999999999999999999999999999865211010   1


Q ss_pred             CccccccCc-ccCCCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCchhhHHHHHHHHH
Q 017703          201 DSAKADSEH-QEDDNSSLDELGNDLSSEEMKVAQLAIGIVSDMLVVIKELIRTITGLLKHENPDDGGKFVDTLERLLKLC  279 (367)
Q Consensus       201 ~~~~~d~~~-d~de~~ddd~~~~~~seee~~~~~~~~~lvk~~~~~lK~lir~i~~~lk~~~~~~~~~~v~~LD~L~~~~  279 (367)
                      ++  .|.++ |+|+.+++++.+.+||++|++++++++++++.+.+++|.+++.|++++|...+..++.++++||+|++++
T Consensus       157 ~~--~d~~~~ddd~~~~~~~~d~~~seee~~~~~~~~~l~~~~~~~lk~~~~~i~~~~k~~~~~~~~~~v~~Ld~L~~~~  234 (275)
T PF13324_consen  157 EF--SDEEDDDDDEDDDDFGDDEDLSEEEMELAKAVLGLLKASLAVLKKLLRAITKLLKSEKPSDSPEQVAQLDKLLDLC  234 (275)
T ss_dssp             ---------------------TTS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHH
T ss_pred             cc--ccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccChhhHHHHHHHHHHH
Confidence            11  01111 1121122333344699999999999999999999999998899998887666766778999999999999


Q ss_pred             hhhhhhhHHhHhccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017703          280 QGIGVQIDELGASLYPPQELSVIKAGSVKILSMTDELQKEV  320 (367)
Q Consensus       280 ~~i~~~VDeL~sslYpp~d~~~v~~~~~~L~~~l~k~~~~i  320 (367)
                      ++|+++|||||++||||+|+++|+.++.+|.+++++|+++|
T Consensus       235 ~~i~~~VDel~~slYpP~d~~~v~~~~~~L~~~l~~~l~~~  275 (275)
T PF13324_consen  235 QEISPSVDELASSLYPPQDPDEVRAAAAKLSSVLKKMLKIV  275 (275)
T ss_dssp             HHHHHHHHHHHHHHSSS--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	367
3ay5_A	360	Crystal Structure Of Hhm (Human Homologue Of Murine		1e-05

>pdb|3AY5|A Chain A, Crystal Structure Of Hhm (Human Homologue Of Murine Maternal Id-Like Molecule) Length = 360

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/276 (21%), Positives = 118/276 (42%), Gaps = 19/276 (6%)
Query: 42  WNDVIQMGEQVSKKATVVGMLWTG-ETPEAKAIEENMAEYFNMLQGFILLSHGSTVGAGP 100
           W  + +    VS++AT + ++++    P  +  ++   +    ++ FI + +      G 
Sbjct: 53  WRRLNEAAVTVSREATTLTIVFSQLPLPSPQETQKFCEQVHAAIKAFIAVYYLLPKDQGI 112
Query: 101 TLSLSIHASVKQVVDSSFKLM-MESITLYAGSDNKDKEHLMPQYVGAVWEACSALKKTPA 159
           TL   +  +   +VD   +LM + S+T     +N D    +  Y  +VW AC  + + P 
Sbjct: 113 TLRKLVRGATLDIVDGMAQLMEVLSVTPTQSPENND----LISY-NSVWVACQQMPQIPR 167
Query: 160 TNITAIGRAMTQVAVSMKDVLREMKELKPSSSDQNNEASHDDSAKADSEHQEDD---NSS 216
            N  A    +T+    +KD   EM++    S   +   +  +   +D+ + EDD     S
Sbjct: 168 DNKAAALLMLTKNVDFVKDAHEEMEQAVEESDPYSGLLNDTEENNSDNHNHEDDVLGFPS 227
Query: 217 LDELGNDLSSEEMKVAQLAIGIVSDMLVVIKELIRTITGLLKHENPDDGGKFVDTLERLL 276
             +L      +E+ +  LA+   S      K  ++ I  L+      D    V  L+ ++
Sbjct: 228 NQDLYWSEDDQELIIPCLALVRAS------KACLKKIRMLVAENGKKDQ---VAQLDDIV 278
Query: 277 KLCQGIGVQIDELGASLYPPQELSVIKAGSVKILSM 312
            +   I   +D+L  S+YPP     ++  S K++S+
Sbjct: 279 DISDEISPSVDDLALSIYPPMSHLTVRINSAKLVSV 314

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	367
3ay5_A	360	Cyclin-D1-binding protein 1; dominant-negative hel	1e-50
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-14

>3ay5_A Cyclin-D1-binding protein 1; dominant-negative helix-loop-helix transcriptional regulator cycle; 2.50A {Homo sapiens} Length = 360

 Score =  172 bits (435), Expect = 1e-50
 Identities = 55/327 (16%), Positives = 130/327 (39%), Gaps = 15/327 (4%)

Query: 7   EKEQLIRTLNNHLNNIHETLQ--VLNQTAASSLEKVSWNDVIQMGEQVSKKATVVGMLWT 64
              + +R L   L  +   ++     +T      ++ W  + +    VS++AT + ++++
Sbjct: 16  SPLEQLRHLAEELRLLLPRVRVGEAQETTEEFNREMFWRRLNEAAVTVSREATTLTIVFS 75

Query: 65  -GETPEAKAIEENMAEYFNMLQGFILLSHGSTVGAGPTLSLSIHASVKQVVDSSFKLMME 123
               P  +  ++   +    ++ FI + +      G TL   +  +   +VD   +LM  
Sbjct: 76  QLPLPSPQETQKFCEQVHAAIKAFIAVYYLLPKDQGITLRKLVRGATLDIVDGMAQLMEV 135

Query: 124 SITLYAGSDNKDKEHLMPQYVGAVWEACSALKKTPATNITAIGRAMTQVAVSMKDVLREM 183
                  + + +   L+     +VW AC  + + P  N  A    +T+    +KD   EM
Sbjct: 136 --LSVTPTQSPENNDLIS--YNSVWVACQQMPQIPRDNKAAALLMLTKNVDFVKDAHEEM 191

Query: 184 KELKPSSSDQNNEASHDDSAKADSEHQEDDNSSLDE-LGNDLSSEEMKVAQLAIGIVSDM 242
           ++    S   +   +  +   +D+ + EDD            S ++ ++    + +V   
Sbjct: 192 EQAVEESDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQELIIPCLALVR-- 249

Query: 243 LVVIKELIRTITGLLKHENPDDGGKFVDTLERLLKLCQGIGVQIDELGASLYPPQELSVI 302
               K  ++ I  L+      D    V  L+ ++ +   I   +D+L  S+YPP     +
Sbjct: 250 --ASKACLKKIRMLVAENGKKD---QVAQLDDIVDISDEISPSVDDLALSIYPPMSHLTV 304

Query: 303 KAGSVKILSMTDELQKEVESFNSSSEA 329
           +  S K++S+  +  +  ++ + + + 
Sbjct: 305 RINSAKLVSVLKKALEITKASHVTPQP 331

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 74.1 bits (181), Expect = 2e-14
 Identities = 62/410 (15%), Positives = 124/410 (30%), Gaps = 111/410 (27%)

Query: 3   RKE-REKEQLIRTLNNHLNNIHETLQVLNQTAASSLEKVSWNDVIQ---MGEQVSKKATV 58
           + E R+   + R      + ++   QV  +   S L+       ++   +  + +K   +
Sbjct: 99  KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY---LKLRQALLELRPAKNVLI 155

Query: 59  VGMLWTG------ETPEAKAIEENMAEYFNMLQGF-ILLSHGSTVGAGP----TLSLSIH 107
            G+L +G      +   +  ++  M   F +   F + L + ++          L   I 
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMD--FKI---FWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 108 ASVKQVVDSSFKLMMESITLYAGSDNKDKEHLM-PQYVGA------VWEA---------C 151
            +     D S  + +   ++      + +  L    Y         V  A         C
Sbjct: 211 PNWTSRSDHSSNIKLRIHSI----QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266

Query: 152 SALKKTPATNITAIGRAMTQVAVSMKDVL-----REMKELKPSSSDQNNEASHDDSAKAD 206
             L  T    +T    A T   +S+          E+K L                 K  
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL---------------LLKY- 310

Query: 207 SEHQEDDNSSLDELGNDLSSEEMKVAQLAIGIVSDMLVVIKELIRTITGLLKHENPDDGG 266
                     LD    DL  E +      + I+++ +   ++ + T     KH N     
Sbjct: 311 ----------LDCRPQDLPREVLTTNPRRLSIIAESI---RDGLATWDN-WKHVN----- 351

Query: 267 KFVDTLERLLKLCQGIGVQIDELGAS----LYPPQELSVIKAGSVKI----LSM------ 312
              D L  +++        ++ L  +    ++    LSV    S  I    LS+      
Sbjct: 352 --CDKLTTIIESS------LNVLEPAEYRKMF--DRLSVFPP-SAHIPTILLSLIWFDVI 400

Query: 313 TDELQKEVESFNSSSEAFIQACNGLRS--SLKQMDSEVDCFNTTDLEAKL 360
             ++   V   +  S    Q      S  S+  ++ +V   N   L   +
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSI-YLELKVKLENEYALHRSI 449

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	367
3ay5_A	360	Cyclin-D1-binding protein 1; dominant-negative hel	100.0

>3ay5_A Cyclin-D1-binding protein 1; dominant-negative helix-loop-helix transcriptional regulator cycle; 2.50A {Homo sapiens}

Probab=100.00  E-value=2.3e-56  Score=441.72  Aligned_cols=300  Identities=16%  Similarity=0.225  Sum_probs=235.4

Q ss_pred             CcCc-chHHHHHHHHHHHHhhhhhhhhcccCCC-CCHHHHHHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHH
Q 017703           36 SLEK-VSWNDVIQMGEQVSKKATVVGMLWTGET-PEAKAIEENMAEYFNMLQGFILLSHGSTVGAGPTLSLSIHASVKQV  113 (367)
Q Consensus        36 ~~~~-~~~~~l~~~a~~l~~~aTKlsll~~~~P-ps~~~~~~~~~~l~~~l~~~~~l~~~~~~g~g~tl~~~i~~~~~~v  113 (367)
                      .++. +||.+|.+++++||+||||+||+|++.| |++.+++++++++++++++++++||+.+.++|++|+++|++.++++
T Consensus        46 ~f~~~~~~~~l~~~a~~l~~~aTKlsLl~~~~p~Ps~~~~~~~~~~~~~~l~~l~s~~~~~~~~~g~tl~~~i~~~v~~v  125 (360)
T 3ay5_A           46 EFNREMFWRRLNEAAVTVSREATTLTIVFSQLPLPSPQETQKFCEQVHAAIKAFIAVYYLLPKDQGITLRKLVRGATLDI  125 (360)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHH
T ss_pred             cCCccchHHHHHHHHHHHHhhhHHhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHH
Confidence            3555 8999999999999999999999997444 7777889999999999999999999998899999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCcccccCcccchhhhHHHhhhhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCc
Q 017703          114 VDSSFKLMMESITLYAGSDNKDKEHLMPQYVGAVWEACSALKKTPATNITAIGRAMTQVAVSMKDVLREMKELKPSSSDQ  193 (367)
Q Consensus       114 v~~~~~L~~~l~~~~~~s~~~~~~~~~l~stG~VWeaCD~l~~lp~~N~~av~~~~~~~~~lvkDaleEleE~~e~~~~~  193 (367)
                      |+++.+|+++++..+.++.    ...++++||+||+|||++.++|++|++|++++|+++.++||||++||+||.++.+++
T Consensus       126 l~~~~~L~~~i~~~~~~~~----~~~~L~stG~VWeaCd~l~~lp~~N~~av~~~~~~~~~lvkDaleEl~E~~e~~D~~  201 (360)
T 3ay5_A          126 VDGMAQLMEVLSVTPTQSP----ENNDLISYNSVWVACQQMPQIPRDNKAAALLMLTKNVDFVKDAHEEMEQAVEESDPY  201 (360)
T ss_dssp             HHHHHHHHHHHHC------------------CHHHHHHHTTTTSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-
T ss_pred             HHHHHHHHHHHHhcccccc----chhHHHHhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence            9999999999998754432    256888999999999999999999999999999999999999999999999764433


Q ss_pred             cccccCCCccccccCcccCCCC----CcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCchh
Q 017703          194 NNEASHDDSAKADSEHQEDDNS----SLDELGNDLSSEEMKVAQLAIGIVSDMLVVIKELIRTITGLLKHENPDDGGKFV  269 (367)
Q Consensus       194 ~~e~s~d~~~~~d~~~d~de~~----ddd~~~~~~seee~~~~~~~~~lvk~~~~~lK~lir~i~~~lk~~~~~~~~~~v  269 (367)
                      .+..+ +  .++++++++++++    ..++++++||++|++++++|++++++++.++|    +|+.+++..++   ++++
T Consensus       202 ~~~~~-d--~ee~~d~~~~d~Dd~~g~~~~~~~~~s~ee~~l~~~~~~l~~a~~~~lk----~i~~~ik~~~~---~~~v  271 (360)
T 3ay5_A          202 SGLLN-D--TEENNSDNHNHEDDVLGFPSNQDLYWSEDDQELIIPCLALVRASKACLK----KIRMLVAENGK---KDQV  271 (360)
T ss_dssp             ------------------------------CTTSCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHCC---TTCH
T ss_pred             ccccc-c--ccccccccCcccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHccCc---hhHH
Confidence            11100 0  0001100111111    12335779999999999999999999988888    56666654433   3678


Q ss_pred             hHHHHHHHHHhhhhhhhHHhHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHhhhc
Q 017703          270 DTLERLLKLCQGIGVQIDELGASLYPPQELSVIKAGSVKILSMTDELQKEVESFNSSSEAFIQACNGLRSSLKQMDSEVD  349 (367)
Q Consensus       270 ~~LD~L~~~~~~i~~~VDeL~sslYpp~d~~~v~~~~~~L~~~l~k~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (367)
                      ++||+|++++++|+++|||||++||||+|+++++.++.+|.+++++|+.+++++|++|+..-.|++.|++++++==..|.
T Consensus       272 ~~LD~L~~~~~~i~~~VDeLa~slYPp~d~~~v~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~Wi~~l~~A~~h~~~~~~  351 (360)
T 3ay5_A          272 AQLDDIVDISDEISPSVDDLALSIYPPMSHLTVRINSAKLVSVLKKALEITKASHVTPQPEDSWIPLLINAIDHCMNRIK  351 (360)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHHHHSTTCC----CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999886444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00