Citrus Sinensis ID: 017709

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------
Protein Sequence
MLSLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADLDRQQCEHDELLKAQMQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLLYANMSDS
Secondary Structure (PSIPRED)
cccHHHHHHHccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcHHccccccccHHHHHHcccHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHcccHHHHHHHHHHHHHHHHcccccccHHHHccccccccHHHHccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHccHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MLSLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADLDRQQCEHDELLKAQMQAHYEEVQRIADATTLPHAMHYLSIRIAeeldlspltdkllrgkeqpytlsssekLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIdtarglgssdlpedadlidrddQQKFLASVDYLANYGMQAMISNVQAAADEAlkgkqlrdIFNTVVLHETFMQILEVFMsmgsphqwvdflmpqdiRFYKLVTasghdettlsgatkfDELMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMRvqsggslisgmplaklvprvvqmspsllaepsnnRIIQVIRTIPEVELFFTLLYANMSDS
Flexible Loop (DISEMBL)
mlslsdfwRRHRRkifittgvlgggyLLYKLYDSQRRIADLDRQQCEHDELLKAQMQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLrgkeqpytlssseklelWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFLMPQDIRFYKLVTASGHDettlsgatkfdeLMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGGSLISGMPLAKLVPRVVQMSpsllaepsnnrIIQVIRTIPEVELFFTLLYANMSDS
Low Complexity Region (SEG)
MLSLSDFWRRHRRKIFITTgvlgggyllyklyDSQRRIADLDRQQCEHDELLKAQMQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLLYANMSDS
Disordered region (IsUnstruct)
*****DFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADLDRQQCEHDELLKAQMQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRG****YTL**SEKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLG*********LIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLLYA*****
Disordered Region (DISOPRED)
*LSLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADL**********LKAQMQAHYEEVQRIADATTLPHAMHYLSIR*A*******************************DRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYID***********************KFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEV**********VDFLMPQDIRF*****************TKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALI******************KLVPRVVQMS*******S*NRIIQVIRTIPEVELFFTLLYANMS**
Disordered Region (DISEMBL)
MLSLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADLDRQQCEHDELLKAQMQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLLYANMSDS
Disordered Region (DISPRO)
*LSLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADLDRQQCEHDELLKAQMQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLG*******ADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLLYANMS**
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADLDRQQCEHDELLKAQMQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLLYANMSDS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	367	2.2.26 [Sep-21-2011]
Q8S9K7	364	Peroxisome biogenesis pro	yes	no	0.953	0.961	0.576	1e-120
Q8LDG7	358	Peroxisome biogenesis pro	no	no	0.940	0.963	0.564	1e-114
Q9JJK3	373	Peroxisomal biogenesis fa	N/A	no	0.822	0.809	0.280	5e-26
Q60HE1	373	Peroxisomal biogenesis fa	N/A	no	0.912	0.898	0.281	5e-26
P56589	373	Peroxisomal biogenesis fa	yes	no	0.912	0.898	0.281	6e-26
A6H7C2	373	Peroxisomal biogenesis fa	yes	no	0.841	0.828	0.280	5e-25
Q9QXY9	372	Peroxisomal biogenesis fa	yes	no	0.852	0.841	0.280	2e-24
Q9JJK4	372	Peroxisomal biogenesis fa	yes	no	0.907	0.895	0.272	5e-24
Q54U86	405	Peroxisome biogenesis fac	yes	no	0.847	0.767	0.203	1e-08
P28795	441	Peroxisomal biogenesis fa	yes	no	0.381	0.317	0.283	3e-06

>sp|Q8S9K7|PEX32_ARATH Peroxisome biogenesis protein 3-2 OS=Arabidopsis thaliana GN=PEX3-2 PE=2 SV=1

 Score =  431 bits (1107), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/364 (57%), Positives = 279/364 (76%), Gaps = 14/364 (3%)

Query: 7   FWRRHRRKIFITTGVLGGGYLLYKLYDSQ-RRIADLDRQ---QCEHDELLKAQMQAHYEE 62
           FWR+HRRK+ +T G LG GYLLYKLY+S  RR+ADL+R+   + E+DE++K QM+AH+E 
Sbjct: 7   FWRKHRRKVLVTAGCLGSGYLLYKLYNSHTRRLADLERELAHERENDEIIKTQMKAHFES 66

Query: 63  VQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILS 122
           +Q I D+TTLPHAM +LSIRI+EE+D+S + D+L +GK     LS  EKL+LWD LKILS
Sbjct: 67  IQMIVDSTTLPHAMQFLSIRISEEIDVSHVMDRLNQGKGM---LSPPEKLQLWDELKILS 123

Query: 123 FTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQQKFLAS 182
           FT++V++LW+VTM+SLYIRVQVNILGRHLY+DTAR LGSS L E+ DLIDRDD+QKFL+S
Sbjct: 124 FTRMVLSLWSVTMLSLYIRVQVNILGRHLYVDTARALGSSHLLEEVDLIDRDDEQKFLSS 183

Query: 183 VDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVD 242
            D+L    M ++IS++Q +A+E LKGKQL+D+  T VL ET MQI++VFMS GSPH WVD
Sbjct: 184 ADFLVTNAMPSLISDMQGSAEEVLKGKQLKDVITTRVLQETVMQIVDVFMSTGSPHHWVD 243

Query: 243 FL-MPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDA 301
           +L MPQD +  +  T+   DE      +KF +LMVETR VL S E+T++V++S K   D 
Sbjct: 244 YLMMPQDTKLSR-TTSDSSDE----AVSKFHQLMVETREVLISTEFTNIVEISLKCFTDV 298

Query: 302 LIDEMRVQS-GGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLL 360
           L++EM  Q+  G L +G PLAK++P++ +    + AEPS NR +Q+IR +PEV+LFFTLL
Sbjct: 299 LVEEMETQTEAGGLATGKPLAKVLPQIEKTMNVITAEPSKNRFLQIIRDLPEVKLFFTLL 358

Query: 361 YANM 364
           YANM
Sbjct: 359 YANM 362

Involved in morphology determination of peroxisomes, but not in import of peroxisomal matrix proteins. May act as a docking factor for PEX19 and be necessary for the import of peroxisomal membrane proteins in the peroxisomes.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LDG7|PEX31_ARATH Peroxisome biogenesis protein 3-1 OS=Arabidopsis thaliana GN=PEX3-1 PE=2 SV=2

 Score =  410 bits (1053), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/363 (56%), Positives = 270/363 (74%), Gaps = 18/363 (4%)

Query: 7   FWRRHRRKIFITTGVLGGGYLLYKLYDSQ-RRIADLDRQ---QCEHDELLKAQMQAHYEE 62
            WR+HRRKI +TT  LG GYLLYKLY++  R++ADL+R+   + E+DE++K QM+AH++ 
Sbjct: 7   LWRKHRRKILVTTTCLGSGYLLYKLYNAHTRKLADLERELANERENDEIIKTQMKAHFDN 66

Query: 63  VQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILS 122
           +Q IAD TTLPHA+H+LS R+ EE+D+S + DKL +GK     L  SEKL+LW+ LKILS
Sbjct: 67  IQMIADTTTLPHAIHHLSSRVVEEIDVSSIMDKLSKGKG---ILIPSEKLQLWNELKILS 123

Query: 123 FTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQQKFLAS 182
           FT++V++LW+VTM+SLYIRVQVNILGRHLYIDTARGLGSS L ++ DLI+RDD+QKFL S
Sbjct: 124 FTRMVLSLWSVTMLSLYIRVQVNILGRHLYIDTARGLGSSHLLDELDLIERDDEQKFLTS 183

Query: 183 VDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVD 242
            D+LA  GM ++ISN+Q A  E LKGKQL+D+  T  L ET M+IL+VFMS GSPH WVD
Sbjct: 184 ADFLATSGMPSLISNMQNAVKEVLKGKQLKDVLTTSALRETVMRILDVFMSTGSPHHWVD 243

Query: 243 FL-MPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDA 301
           +L M QD         S  D T     TKF  L+ ETR VL+S ++++V ++S K    A
Sbjct: 244 YLMMSQD----ATTDVSSSDAT----VTKFHLLITETREVLTSNDFSNVAEISLKCCAVA 295

Query: 302 LIDEMRVQSGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLLY 361
           L++EM  Q+G  L +GM LAKL+P++ +  P + AEP  NR +Q+IR +PEV+LFFTLLY
Sbjct: 296 LVEEMETQTG--LATGMQLAKLLPQIEKTMPEISAEPEKNRFLQLIRDLPEVKLFFTLLY 353

Query: 362 ANM 364
           ANM
Sbjct: 354 ANM 356

Involved in morphology determination of peroxisomes, but not in import of peroxisomal matrix proteins. May act as a docking factor for PEX19 and be necessary for the import of peroxisomal membrane proteins in the peroxisomes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9JJK3|PEX3_CRILO Peroxisomal biogenesis factor 3 OS=Cricetulus longicaudatus GN=PEX3 PE=2 SV=1

 Score =  119 bits (297), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 176/349 (50%), Gaps = 47/349 (13%)

Query: 3   SLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADL-DRQQCEHDELLKAQMQAHYE 61
           S+ +F +RH++K      VLGG Y+L K    Q++I ++ +R+  E+  + +A+ Q H+E
Sbjct: 4   SMWNFLKRHKKKCIFLGTVLGGVYILGKY--GQKKIREIQEREAAEY--IAQARRQYHFE 59

Query: 62  EVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKIL 121
             QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+ LKI+
Sbjct: 60  SNQRTCNMTVL-SMLPTLREALMQQLNSESLTALL---KNRP-----SNKLEIWEDLKII 110

Query: 122 SFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTAR-GLGSSDLPEDADLIDRDDQQKFL 180
           SFT+ +VA+++  M+ + +RVQ+NI+G ++Y+D A  G   + +     L   D QQ++L
Sbjct: 111 SFTRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNATVGKNGTTV-----LAPPDVQQQYL 165

Query: 181 ASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQW 240
           +S+ +L   G+  +++ ++ A    L    L+   + + L +   +I  +     SP  W
Sbjct: 166 SSIQHLLGDGLTELVTVIKQAVQRILGSVSLKHSLSLLDLEQKLKEIRILVEQHRSP-SW 224

Query: 241 VDFLMPQDIRFYKLVTASGHDETTLSGATKFD---------ELMVETRAVLSSAEYTSVV 291
           +D    +D+    L      DE T   A  +          +L+ ETR +L S ++++V+
Sbjct: 225 ID----KDVSKSSLCQYMMPDEETPLAAQAYGLSPRDITTIKLLNETRDMLESPDFSTVL 280

Query: 292 DMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRV 327
           +         L+D M          +Q G S+ S     +PLAK++P V
Sbjct: 281 NTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSINSLSSVSLPLAKIIPIV 329

Involved in peroxisome biosynthesis and integrity. Assembles membrane vesicles before the matrix proteins are translocated. As a docking factor for PEX19, is necessary for the import of peroxisomal membrane proteins in the peroxisomes.

Cricetulus longicaudatus (taxid: 10030)

>sp|Q60HE1|PEX3_MACFA Peroxisomal biogenesis factor 3 OS=Macaca fascicularis GN=PEX3 PE=2 SV=1

 Score =  119 bits (297), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 110/391 (28%), Positives = 198/391 (50%), Gaps = 56/391 (14%)

Query: 3   SLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADL-DRQQCEHDELLKAQMQAHYE 61
           S+ +F +RH++K      VLGG Y+L K    Q++I ++ +R+  E+  + +A+ Q H+E
Sbjct: 4   SVWNFLKRHKKKCIFLGTVLGGVYILGKY--GQKKIREIQEREAAEY--IAQARRQYHFE 59

Query: 62  EVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKIL 121
             QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+ LKI+
Sbjct: 60  SNQRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KNRP-----SNKLEIWEDLKII 110

Query: 122 SFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQQKFLA 181
           SFT+ +VA+++  M+ + +RVQ+NI+G ++Y+D A  +G +       L   D QQ++L+
Sbjct: 111 SFTRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKNG---TTILAPPDVQQQYLS 166

Query: 182 SVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWV 241
           S+ +L   G+  +I+ ++ A  + L    L+   + + L +   +I  +     S   W+
Sbjct: 167 SIQHLLGDGLTELITVIKQAVQKILGSVSLKHSLSLLDLEQKLKEIRNLVEQHKS-SSWI 225

Query: 242 D----------FLMPQDIRFYKLVTASG---HDETTLSGATKFDELMVETRAVLSSAEYT 288
           +          ++MP D      V A G    D TT+       +L+ ETR +L S +++
Sbjct: 226 NKDGSKSLLCHYMMP-DEETPLAVQACGLSPRDITTI-------KLLNETRDMLESPDFS 277

Query: 289 SVVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMSPSLL 335
           +V++         L+D M          +Q G S+ S     +PLAK++P V     S+ 
Sbjct: 278 TVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIVNGQIHSVC 337

Query: 336 AE-PSNNRIIQVIRTIPEVELFFTLLYANMS 365
           +E PS+   +Q + T+ +V+ F   +Y   S
Sbjct: 338 SETPSH--FVQDLLTMEQVKDFAANVYEAFS 366

Involved in peroxisome biosynthesis and integrity. Assembles membrane vesicles before the matrix proteins are translocated. As a docking factor for PEX19, is necessary for the import of peroxisomal membrane proteins in the peroxisomes.

Macaca fascicularis (taxid: 9541)

>sp|P56589|PEX3_HUMAN Peroxisomal biogenesis factor 3 OS=Homo sapiens GN=PEX3 PE=1 SV=1

 Score =  118 bits (296), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 110/391 (28%), Positives = 197/391 (50%), Gaps = 56/391 (14%)

Query: 3   SLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADL-DRQQCEHDELLKAQMQAHYE 61
           S+ +F +RH++K      VLGG Y+L K    Q++I ++ +R+  E+  + +A+ Q H+E
Sbjct: 4   SVWNFLKRHKKKCIFLGTVLGGVYILGKY--GQKKIREIQEREAAEY--IAQARRQYHFE 59

Query: 62  EVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKIL 121
             QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+ LKI+
Sbjct: 60  SNQRTCNMTVL-SMLPTLREALMQQLNSESLTALL---KNRP-----SNKLEIWEDLKII 110

Query: 122 SFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQQKFLA 181
           SFT+  VA+++  M+ + +RVQ+NI+G ++Y+D A  +G +       L   D QQ++L+
Sbjct: 111 SFTRSTVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKNG---TTILAPPDVQQQYLS 166

Query: 182 SVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWV 241
           S+ +L   G+  +I+ ++ A  + L    L+   + + L +   +I  +     S   W+
Sbjct: 167 SIQHLLGDGLTELITVIKQAVQKVLGSVSLKHSLSLLDLEQKLKEIRNLVEQHKS-SSWI 225

Query: 242 D----------FLMPQDIRFYKLVTASG---HDETTLSGATKFDELMVETRAVLSSAEYT 288
           +          ++MP D      V A G    D TT+       +L+ ETR +L S +++
Sbjct: 226 NKDGSKPLLCHYMMP-DEETPLAVQACGLSPRDITTI-------KLLNETRDMLESPDFS 277

Query: 289 SVVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMSPSLL 335
           +V++         L+D M          +Q G S+ S     +PLAK++P V     S+ 
Sbjct: 278 TVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIVNGQIHSVC 337

Query: 336 AE-PSNNRIIQVIRTIPEVELFFTLLYANMS 365
           +E PS+   +Q + T+ +V+ F   +Y   S
Sbjct: 338 SETPSH--FVQDLLTMEQVKDFAANVYEAFS 366

Involved in peroxisome biosynthesis and integrity. Assembles membrane vesicles before the matrix proteins are translocated. As a docking factor for PEX19, is necessary for the import of peroxisomal membrane proteins in the peroxisomes.

Homo sapiens (taxid: 9606)

>sp|A6H7C2|PEX3_BOVIN Peroxisomal biogenesis factor 3 OS=Bos taurus GN=PEX3 PE=2 SV=1

 Score =  115 bits (289), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 185/363 (50%), Gaps = 54/363 (14%)

Query: 6   DFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADL-DRQQCEHDELLKAQMQAHYEEVQ 64
           +F +RH++K      VLGG Y+L K    Q++I ++ +R+  E+  + +A+ Q H+E  Q
Sbjct: 7   NFLKRHKKKCIFLGTVLGGVYILGKY--GQKKIREIQEREAAEY--IAQARRQYHFESNQ 62

Query: 65  RIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSFT 124
           R  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+ LKI+SFT
Sbjct: 63  RTCNMTVLS-MLPTLREALMQQLNSESLTALL---KTRP-----SNKLEIWEDLKIISFT 113

Query: 125 KLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQQKFLASVD 184
           + +VA+++  M+ + +RVQ+NI+G ++Y+D A  +G +       L   D QQ++L+S+ 
Sbjct: 114 RSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKNG---TTVLAPPDVQQQYLSSIQ 169

Query: 185 YLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVD-- 242
           +L   G+  +I+ ++ A  + L    L+   + + L +   +I ++     S   W++  
Sbjct: 170 HLLGDGLTELITVIKQAVQKILGSVSLKHSLSLLDLEQKLKEIRDLVEQHKS-SSWINND 228

Query: 243 --------FLMPQDIRFYKLVTASG---HDETTLSGATKFDELMVETRAVLSSAEYTSVV 291
                   ++MP D      V A G    D TT+       +L+ ETR +L S ++++V+
Sbjct: 229 GSKSLLCHYMMP-DEETPLAVQACGLSPRDVTTI-------KLLNETRDMLESPDFSTVL 280

Query: 292 DMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMSPSLLAE- 337
           +         L+D M          +Q G S+ S     +PLAK++P +     S+ +E 
Sbjct: 281 NTCLSRGFSRLLDNMAEFFRPTEQDLQHGNSINSLSSVSLPLAKIIPIINGQIHSVCSET 340

Query: 338 PSN 340
           PS+
Sbjct: 341 PSH 343

Involved in peroxisome biosynthesis and integrity. Assembles membrane vesicles before the matrix proteins are translocated. As a docking factor for PEX19, is necessary for the import of peroxisomal membrane proteins in the peroxisomes.

Bos taurus (taxid: 9913)

>sp|Q9QXY9|PEX3_MOUSE Peroxisomal biogenesis factor 3 OS=Mus musculus GN=Pex3 PE=2 SV=1

 Score =  113 bits (283), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/364 (28%), Positives = 182/364 (50%), Gaps = 51/364 (14%)

Query: 3   SLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADL-DRQQCEHDELLKAQMQAHYE 61
           S+ +F +RH++K      VLGG Y+L K    Q++I ++ +R+  E+  + +A+ Q H+E
Sbjct: 4   SMWNFLKRHKKKCIFLGTVLGGVYILGKY--GQKKIREIQEREAAEY--IAQARRQYHFE 59

Query: 62  EVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKIL 121
             QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+ LKI+
Sbjct: 60  SNQRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KSRP-----SNKLEIWEDLKII 110

Query: 122 SFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQQKFLA 181
           SFT+ +VA+++  M+ + +RVQ+NI+G ++Y+D A  +G +       L   D QQ++L+
Sbjct: 111 SFTRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-TVGKNG---TTVLAPPDVQQQYLS 166

Query: 182 SVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQ-- 239
           S+ +L   G+  +++ ++ A    L    L+   + + L +   +I      +   HQ  
Sbjct: 167 SIQHLLGDGLTELVTVIKQAVQRILGSVSLKHSLSLLDLEQKLKEI----RILVEQHQSS 222

Query: 240 WVDFLMPQDIRFYKLVTASGHDETTLSGATKFD---------ELMVETRAVLSSAEYTSV 290
           W D    +D+    L      DE T   A  +          +L+ ETR +L S ++++V
Sbjct: 223 WND----KDVSRSSLCQYMMPDEETPLAAQAYGLSHRDITTIKLLNETRDMLESPDFSTV 278

Query: 291 VDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMSPSLLAE 337
           ++         L+D M          +Q G S+ S     +PLAK++P V     S+ +E
Sbjct: 279 LNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSINSLSSVSLPLAKIIPIVNGQIHSVCSE 338

Query: 338 -PSN 340
            PS+
Sbjct: 339 TPSH 342

Involved in peroxisome biosynthesis and integrity. Assembles membrane vesicles before the matrix proteins are translocated. As a docking factor for PEX19, is necessary for the import of peroxisomal membrane proteins in the peroxisomes.

Mus musculus (taxid: 10090)

>sp|Q9JJK4|PEX3_RAT Peroxisomal biogenesis factor 3 OS=Rattus norvegicus GN=Pex3 PE=1 SV=1

 Score =  112 bits (279), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 107/392 (27%), Positives = 196/392 (50%), Gaps = 59/392 (15%)

Query: 3   SLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADL-DRQQCEHDELLKAQMQAHYE 61
           S+ +F +RH++K      VLGG Y+L K    Q+++ ++ +R+  E+  + +A+ Q H+E
Sbjct: 4   SMWNFLKRHKKKCIFLGTVLGGVYILGKY--GQKKLREIQEREAAEY--IAQARRQYHFE 59

Query: 62  EVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKIL 121
             QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+ LKI+
Sbjct: 60  SNQRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KNRP-----SNKLEIWEDLKII 110

Query: 122 SFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTAR-GLGSSDLPEDADLIDRDDQQKFL 180
           SFT+ +VA+++  M+ + +RVQ+NI+G ++Y+D A  G   + +     L   D QQ++L
Sbjct: 111 SFTRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNATVGKNGTSI-----LAPPDVQQQYL 165

Query: 181 ASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQI---LEVFMSM--- 234
           +S+ +L   G+  +++ ++ A    L    L+   + + L +   +I   +E   S    
Sbjct: 166 SSIQHLLGDGLTELVTVIKQAVQRILGSISLKHSLSLLDLEQKLKEIRTLVEQHRSCWND 225

Query: 235 --GSPHQWVDFLMPQD-----IRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEY 287
              S      ++MP +      + Y L   S  D TT+       +L+ ETR +L S ++
Sbjct: 226 KDASKSSLCHYMMPDEETPLAAQAYGL---SPRDITTI-------KLLNETRDMLESPDF 275

Query: 288 TSVVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMSPSL 334
           ++V++         L+D M          +Q G S+ S     +PLAK++P V     S+
Sbjct: 276 STVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSINSLSSVSLPLAKIIPIVNGQIHSV 335

Query: 335 LAE-PSNNRIIQVIRTIPEVELFFTLLYANMS 365
            +E PS+   +Q +  + +V+ F   +Y   S
Sbjct: 336 CSETPSH--FVQDLLMMEQVKDFAANVYEAFS 365

Involved in peroxisome biosynthesis and integrity. Assembles membrane vesicles before the matrix proteins are translocated. As a docking factor for PEX19, is necessary for the import of peroxisomal membrane proteins in the peroxisomes.

Rattus norvegicus (taxid: 10116)

>sp|Q54U86|PEX3_DICDI Peroxisome biogenesis factor 3 OS=Dictyostelium discoideum GN=pex3 PE=3 SV=1

 Score = 61.2 bits (147), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/374 (20%), Positives = 162/374 (43%), Gaps = 63/374 (16%)

Query: 7   FWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADLDRQQCEHDELLKAQMQAHYEEVQRI 66
           F   H+  +F+ +   G  YL + +  S +R         +  +L K ++  ++E  Q++
Sbjct: 27  FLYNHKMGVFLVSFSSGVAYLYHNITQSHKR---------KQIKLAKERVMTYFESTQKL 77

Query: 67  ADATTLPHAMHYLSIRIAEELDLSPLTDKL-------LRGKEQPYTLSSSEKLELWDRLK 119
           ++          +   I + +D + + DK+       +R ++ P     SEKL+L D+LK
Sbjct: 78  SERE--------VDAIITKFIDENKILDKIQTPSLASIRSEKDP-----SEKLKLTDQLK 124

Query: 120 ILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQQKF 179
           +   TKL   L+ + MV+++ R+Q+N++G++ Y+D    L          LI++  +  F
Sbjct: 125 VSIITKLFSVLYIIPMVTIFNRLQINLIGKYCYLDYV--LYKDQEQHSMRLINQQTESNF 182

Query: 180 LASVD---YLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQIL-------- 228
           + S +   +  +      I+ +Q     +LK  ++    +     E F+++L        
Sbjct: 183 INSRNNCYFFKDINFSQFINLIQEQIKISLKDWKI----DQQSSFEGFLKLLINIRNNFE 238

Query: 229 --EVFMSMGSPHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMV---ETRAVLS 283
             E+  S+ S +  + +L+P +     LV +    E       ++  L +   E R +  
Sbjct: 239 KKEIIASISSDNSLLKYLIPTEEEIDNLVQSQKTPEN--DNDIEYQNLKMLYNEIRNIFE 296

Query: 284 SAEYTSV----VDMSFKAAVDALID-----EMRVQSGGSLISGMPLAKLVPR-VVQMSPS 333
           S ++  V    ++ SF      L +     E++ Q    ++  +P+   +P+ +V M   
Sbjct: 297 SQKFYDVLKDSINQSFLEFTKNLREDFESTELKKQIDSIVLPDLPIEMEIPKPLVTMHNI 356

Query: 334 LLAEPSNNRIIQVI 347
           +L    N +I  +I
Sbjct: 357 ILLPKINKQIGNII 370

Involved in peroxisome biosynthesis.

Dictyostelium discoideum (taxid: 44689)

>sp|P28795|PEX3_YEAST Peroxisomal biogenesis factor 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PEX3 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 26/166 (15%)

Query: 9   RRHRRKIFI---------TTGVLGGGYLLYKLYDSQRRIADLDRQQCEHDELLKAQMQAH 59
           +RHR K+ I         TTG +   ++   LY  Q RI +      +H   +K Q++  
Sbjct: 12  QRHRGKVLISLTGIAALFTTGSVVVFFVKRWLYKQQLRITE------QH--FIKEQIKRR 63

Query: 60  YEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSE--------- 110
           +E+ Q  +  T       +  +    +L+L  +  +L   K Q     SSE         
Sbjct: 64  FEQTQEDSLYTIYELLPVWRMVLNENDLNLDSIVTQLKDQKNQLTRAKSSESRESSPLKS 123

Query: 111 KLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTA 156
           K ELW+ L++ S  KLV   + V+ + L  R+Q+NIL R+ Y+D+A
Sbjct: 124 KAELWNELELKSLIKLVTVTYTVSSLILLTRLQLNILTRNEYLDSA 169

Involved in peroxisome biosynthesis. May function as a receptor protein. Lack of this protein causes the peroxisomal-deficient phenotype and mislocalization in the cytosol of peroxisomal matrix proteins.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	367
224118704	374	predicted protein [Populus trichocarpa]	0.989	0.970	0.659	1e-139
225456094	373	PREDICTED: peroxisome biogenesis protein	0.991	0.975	0.670	1e-139
224135481	374	predicted protein [Populus trichocarpa]	0.975	0.957	0.663	1e-137
255577364	373	amino acid transporter, putative [Ricinu	0.989	0.973	0.652	1e-135
356512996	369	PREDICTED: peroxisome biogenesis protein	0.983	0.978	0.601	1e-128
255639582	369	unknown [Glycine max]	0.983	0.978	0.579	1e-122
356524660	369	PREDICTED: peroxisome biogenesis protein	0.983	0.978	0.579	1e-122
449497537	373	PREDICTED: peroxisome biogenesis protein	0.991	0.975	0.589	1e-121
449439105	373	PREDICTED: peroxisome biogenesis protein	0.991	0.975	0.586	1e-121
22330115	364	peroxin 3 [Arabidopsis thaliana] gi|7516	0.953	0.961	0.576	1e-118

>gi|224118704|ref|XP_002317886.1| predicted protein [Populus trichocarpa] gi|222858559|gb|EEE96106.1| predicted protein [Populus trichocarpa]

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 244/370 (65%), Positives = 300/370 (81%), Gaps = 7/370 (1%)

Query: 1   MLSLSDFWRRHRRKIFITTGVLGGGYLLYKLYDS-QRRIADLDRQ---QCEHDELLKAQM 56
           MLSL +FWRRHR KI IT GVLG GY LY+LY++ ++R+ADL+R+   Q  +DEL+KAQ+
Sbjct: 1   MLSLRNFWRRHRSKILITAGVLGSGYFLYRLYNAHEQRLADLERELARQRANDELIKAQL 60

Query: 57  QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 116
           QAH+E VQ IAD TTLPHAM YL  RIAEELDLS LT++L +GK +PYTL+SSEKLELWD
Sbjct: 61  QAHFENVQLIADTTTLPHAMQYLRSRIAEELDLSQLTERLQKGKGKPYTLTSSEKLELWD 120

Query: 117 RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQ 176
           RLKILSFT++VV+LWAVT++SLYI+VQVNILGRHLYIDTARGLGSS L E+ DLIDRDDQ
Sbjct: 121 RLKILSFTQMVVSLWAVTILSLYIKVQVNILGRHLYIDTARGLGSSLLLENVDLIDRDDQ 180

Query: 177 QKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGS 236
           Q FLA  D+LAN G+ A+ISN+QA   E ++GK+L D+FNT   HET MQIL+ FMS+GS
Sbjct: 181 QNFLAGADFLANNGLLALISNIQAVVTEVIEGKKLIDLFNTTSFHETVMQILDKFMSVGS 240

Query: 237 PHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFK 296
            HQW+D+LMP+D   YKL T+S  D+T L  +T FD+LMVE R VLSSAE+  ++ +S K
Sbjct: 241 LHQWIDYLMPEDSGHYKLGTSSSIDDTVLPNSTNFDQLMVEARTVLSSAEFGKIMGISLK 300

Query: 297 AAVDALIDEMRVQ---SGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEV 353
            AVDAL+++M  Q   +G SL SGMPLAKL+ RV+QM PSLL E S N+ I++IRT+PEV
Sbjct: 301 VAVDALVEDMEAQCQSTGASLTSGMPLAKLLSRVMQMVPSLLREASQNQFIKIIRTVPEV 360

Query: 354 ELFFTLLYAN 363
           ELFFTLLYAN
Sbjct: 361 ELFFTLLYAN 370

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456094|ref|XP_002281306.1| PREDICTED: peroxisome biogenesis protein 3-2 [Vitis vinifera] gi|297734292|emb|CBI15539.3| unnamed protein product [Vitis vinifera]

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 248/370 (67%), Positives = 301/370 (81%), Gaps = 6/370 (1%)

Query: 1   MLSLSDFWRRHRRKIFITTGVLGGGYLLYKLYDS-QRRIADLDRQ---QCEHDELLKAQM 56
           M S+ DFWRRHRRKIF++ GV G GYLLYKLYD+ +RR+ DL+R+   Q E++EL+KAQM
Sbjct: 1   MFSVRDFWRRHRRKIFVSVGVFGSGYLLYKLYDAHRRRLDDLERELAVQRENEELIKAQM 60

Query: 57  QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 116
           QAH+E +QRIAD TTLPH+M YLS RIAEELDLS LT++L++GK QP TL+ SEKLELWD
Sbjct: 61  QAHFESIQRIADTTTLPHSMLYLSGRIAEELDLSHLTERLMKGKGQPNTLTPSEKLELWD 120

Query: 117 RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQ 176
           RLKILSFT++V++LWA+TM+SLYIRVQVNILGRHLYIDTARG GSS L E+AD IDR DQ
Sbjct: 121 RLKILSFTRMVLSLWAMTMLSLYIRVQVNILGRHLYIDTARGGGSSHLLEEADPIDRHDQ 180

Query: 177 QKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGS 236
           QKFLAS D+L+NY + A+ISN+ AAA E LKGKQLRD+FN++VLH T MQIL++F+S G 
Sbjct: 181 QKFLASADFLSNYSIPALISNMHAAAAEVLKGKQLRDVFNSMVLHGTIMQILDLFISTGK 240

Query: 237 PHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFK 296
           PH  VD+LMP D + YK  + S  D +T +  TKFD+LMVETRAVLSSAE+ +V+D+S +
Sbjct: 241 PHNLVDYLMPDDTKSYKPASPSNGDSSTPADVTKFDQLMVETRAVLSSAEFINVIDVSLR 300

Query: 297 AAVDALI-DEMRVQ-SGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVE 354
             VDA++ D M VQ  GGS  SGM LAKL+PRV QM P LL EPS NR IQ+I+  PEVE
Sbjct: 301 TVVDAVVEDMMGVQLGGGSPSSGMVLAKLLPRVAQMGPLLLEEPSKNRFIQIIQKAPEVE 360

Query: 355 LFFTLLYANM 364
            FFTLLYANM
Sbjct: 361 FFFTLLYANM 370

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135481|ref|XP_002322084.1| predicted protein [Populus trichocarpa] gi|222869080|gb|EEF06211.1| predicted protein [Populus trichocarpa]

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 242/365 (66%), Positives = 295/365 (80%), Gaps = 7/365 (1%)

Query: 6   DFWRRHRRKIFITTGVLGGGYLLYKLYDS-QRRIADLDRQ---QCEHDELLKAQMQAHYE 61
           +FWRRH+RKI IT+GVLG GY L KLY++ Q+++ADL+R+   Q  +DEL+KAQ+Q H+E
Sbjct: 6   NFWRRHKRKILITSGVLGSGYFLCKLYNAHQQKLADLERELARQRANDELIKAQLQDHFE 65

Query: 62  EVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKIL 121
            VQ IAD TTLPHAM YL  RIAEELDLS LT++L +GK QP TL+SSEKLELWDRLKIL
Sbjct: 66  NVQLIADTTTLPHAMQYLRTRIAEELDLSQLTERLQKGKGQPTTLTSSEKLELWDRLKIL 125

Query: 122 SFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQQKFLA 181
           SFT+++V+LWAVTM+SLYI+VQVNILGRHLYIDTARGLGSS L E+ DL+DRDDQQKFLA
Sbjct: 126 SFTQMLVSLWAVTMLSLYIKVQVNILGRHLYIDTARGLGSSLLLENVDLVDRDDQQKFLA 185

Query: 182 SVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWV 241
           S D+LAN G+ A+ISN+QA   E L+GK+L D+FNT  LHET MQIL  FMSMGSPHQW+
Sbjct: 186 SADFLANNGLLALISNIQAVVTEVLEGKKLTDLFNTTSLHETVMQILNKFMSMGSPHQWI 245

Query: 242 DFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDA 301
           D+LMP+D    KL  +S  D+  L  +  FD+LMVE RAVLSSAE+  ++++S K AVDA
Sbjct: 246 DYLMPEDCGHCKLGPSSSIDDMILPDSMNFDQLMVEARAVLSSAEFGKIMEISLKVAVDA 305

Query: 302 LIDEMRVQS---GGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFT 358
           L+D+M  QS   G SL  GMPLAKL+ RV+Q+ PSLL E S N+IIQ+IR +PEVELFFT
Sbjct: 306 LVDDMEAQSQSTGASLTLGMPLAKLLSRVLQIVPSLLGEASQNQIIQIIRNVPEVELFFT 365

Query: 359 LLYAN 363
           LLYAN
Sbjct: 366 LLYAN 370

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577364|ref|XP_002529562.1| amino acid transporter, putative [Ricinus communis] gi|223530974|gb|EEF32831.1| amino acid transporter, putative [Ricinus communis]

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 240/368 (65%), Positives = 292/368 (79%), Gaps = 5/368 (1%)

Query: 1   MLSLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQR-RIADLDRQQC---EHDELLKAQM 56
           MLSL DFWRRHRRKI I +GVLG GY LYKLY++ + R+A+L+R+     EHDEL+ AQ+
Sbjct: 1   MLSLRDFWRRHRRKIIIASGVLGSGYFLYKLYNAHKCRLAELERELASNREHDELINAQV 60

Query: 57  QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 116
            AH+E +QRIAD TTLPHAMHYLS RIAEELDLS LT++L++GK QP  L+ SEKLELWD
Sbjct: 61  LAHFENIQRIADTTTLPHAMHYLSSRIAEELDLSQLTERLMKGKGQPNALTPSEKLELWD 120

Query: 117 RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQ 176
           RLKILSFT+LVV+LWA+TM+SLYIR QVNILGRHLY+ TAR LGSSDL ED DLI+RD Q
Sbjct: 121 RLKILSFTRLVVSLWAMTMLSLYIRTQVNILGRHLYLATARVLGSSDLIEDIDLIERDGQ 180

Query: 177 QKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGS 236
           QKFLAS D+ AN G+ A+ S+VQ AA E LKGKQLRD FNT  LHET MQIL++ MS GS
Sbjct: 181 QKFLASSDFFANSGILALSSDVQLAAAEVLKGKQLRDFFNTATLHETIMQILDLLMSRGS 240

Query: 237 PHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFK 296
           PH WV++LMP D RF K    S  D+  ++  TKF++LM E RAV+SSAE+  VV+ S +
Sbjct: 241 PHHWVEYLMPADARFDKRPIDSSSDDIIMTDGTKFEQLMAEARAVISSAEFLGVVEKSLE 300

Query: 297 AAVDALIDEMRVQ-SGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVEL 355
            +VDAL+ +M  + SGGSL++GMPLA+LVPRV QM P LL EPS NR +Q+I +IP+VE 
Sbjct: 301 VSVDALVADMGAESSGGSLMAGMPLARLVPRVAQMGPLLLEEPSRNRFLQIIWSIPQVEG 360

Query: 356 FFTLLYAN 363
           FF+ LYAN
Sbjct: 361 FFSALYAN 368

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512996|ref|XP_003525200.1| PREDICTED: peroxisome biogenesis protein 3-2-like [Glycine max]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 222/369 (60%), Positives = 289/369 (78%), Gaps = 8/369 (2%)

Query: 1   MLSLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRR-IADLDRQ---QCEHDELLKAQM 56
           MLS+ DFWRRHRRK+F+T GVLG GYLLYKLY + R  + +L+R+   Q E +EL+KAQM
Sbjct: 1   MLSVRDFWRRHRRKVFVTVGVLGSGYLLYKLYGAHRHGVQELERELAVQRETEELMKAQM 60

Query: 57  QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 116
           QAH+E +QR++D T LPHAMH LS RI EELDLS L ++L++GK QP TL+ SEKL+LW 
Sbjct: 61  QAHFENIQRMSDVT-LPHAMHELSCRITEELDLSHLLERLIQGKGQPNTLTQSEKLDLWS 119

Query: 117 RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQ 176
           RLKILSFT++ +++WA TM+SLY +VQVNILGRHLYIDTAR LG SD  E  D++DR+DQ
Sbjct: 120 RLKILSFTRMTLSVWATTMLSLYTKVQVNILGRHLYIDTARSLGISDSVESGDVVDREDQ 179

Query: 177 QKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGS 236
           +KFL SVD+L+ +GM A+IS+++AA  E LKGKQL   FN+  LHET MQIL  FMSMG+
Sbjct: 180 KKFLDSVDFLSQHGMPALISDMEAATKEVLKGKQLSTFFNSTTLHETIMQILNTFMSMGT 239

Query: 237 PHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFK 296
           P+ W+ +++P+D+R Y   T SG D+      T+F++LM+E RAVLSSAE+ S+V++S K
Sbjct: 240 PNSWIKYMIPEDVRPYS--TTSGSDDPVPFDVTEFEQLMIEARAVLSSAEFGSIVEISLK 297

Query: 297 AAVDALIDEMRVQ-SGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVEL 355
           A VD L++ MR + SGGS+  GMPLA+++P+V QM P LL EPS N+ IQ+I+ I EVEL
Sbjct: 298 AVVDTLVELMRTKFSGGSVAEGMPLARVLPQVAQMCPLLLGEPSKNQFIQIIKNIQEVEL 357

Query: 356 FFTLLYANM 364
           FFTLLYANM
Sbjct: 358 FFTLLYANM 366

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255639582|gb|ACU20085.1| unknown [Glycine max]

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/369 (57%), Positives = 286/369 (77%), Gaps = 8/369 (2%)

Query: 1   MLSLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRR-IADLDRQ---QCEHDELLKAQM 56
           MLS+ DFWRRHRRK+F+T GVLG GYLLYKLY +QR  + +L+R+   Q E ++L+KAQM
Sbjct: 1   MLSVRDFWRRHRRKVFVTVGVLGSGYLLYKLYGAQRHGVQELERELAVQRETEDLMKAQM 60

Query: 57  QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 116
           QAH+E +Q+++D T LPHAMH LS RI EELDLS L ++L++GK QP TL+ SEKL+LW 
Sbjct: 61  QAHFENIQKMSDVT-LPHAMHELSCRITEELDLSHLLERLIQGKGQPNTLTQSEKLDLWS 119

Query: 117 RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQ 176
           RLKILSFT++ +++WA TM+SLY +VQVNILGRHLYIDTAR LG SD  E  D++DR+DQ
Sbjct: 120 RLKILSFTRMTLSVWATTMLSLYTKVQVNILGRHLYIDTARSLGISDSVESGDVVDREDQ 179

Query: 177 QKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGS 236
           +KFL ++D+L+ +GM A+IS+++AA  E LKGKQL   FN+  LHET MQIL  FMSMG+
Sbjct: 180 KKFLDNIDFLSQHGMPALISDMEAATKEVLKGKQLSTFFNSTTLHETIMQILNSFMSMGT 239

Query: 237 PHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFK 296
           P+ W+ +++P+D+R Y   T  G D+      T+F++LM+E  AVLSSAE+ S+V++S K
Sbjct: 240 PNSWIKYMIPEDVRPYS--TTHGSDDPVPFDMTEFEQLMMEAWAVLSSAEFGSIVEISLK 297

Query: 297 AAVDALIDEMRVQ-SGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVEL 355
           A VD L++ M  + SGGS+  G+PLA+++P+V QM P LL EP  N+ IQ+I+ I EVEL
Sbjct: 298 AVVDTLVELMGTKFSGGSVAGGLPLARVLPQVAQMCPLLLEEPRKNQFIQIIKNIQEVEL 357

Query: 356 FFTLLYANM 364
           FFTLLYANM
Sbjct: 358 FFTLLYANM 366

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524660|ref|XP_003530946.1| PREDICTED: peroxisome biogenesis protein 3-2-like [Glycine max]

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/369 (57%), Positives = 286/369 (77%), Gaps = 8/369 (2%)

Query: 1   MLSLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRR-IADLDRQ---QCEHDELLKAQM 56
           MLS+ DFWRRHRRK+F+T GVLG GYLLYKLY +QR  + +L+R+   Q E ++L+KAQM
Sbjct: 1   MLSVRDFWRRHRRKVFVTVGVLGSGYLLYKLYGAQRHGVQELERELAVQRETEDLMKAQM 60

Query: 57  QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 116
           QAH+E +Q+++D T LPHAMH LS RI EELDLS L ++L++GK QP TL+ SEKL+LW 
Sbjct: 61  QAHFENIQKMSDVT-LPHAMHELSCRITEELDLSHLLERLIQGKGQPNTLTQSEKLDLWS 119

Query: 117 RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQ 176
           RLKILSFT++ +++WA TM+SLY +VQVNILGRHLYIDTAR LG SD  E  D++DR+DQ
Sbjct: 120 RLKILSFTRMTLSVWATTMLSLYTKVQVNILGRHLYIDTARSLGISDSVESGDVVDREDQ 179

Query: 177 QKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGS 236
           +KFL ++D+L+ +GM A+IS+++AA  E LKGKQL   FN+  LHET MQIL  FMSMG+
Sbjct: 180 KKFLDNIDFLSQHGMPALISDMEAATKEVLKGKQLSTFFNSTTLHETIMQILNSFMSMGT 239

Query: 237 PHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFK 296
           P+ W+ +++P+D+R Y   T  G D+      T+F++LM+E  AVLSSAE+ S+V++S K
Sbjct: 240 PNSWIKYMIPEDVRPYS--TTYGSDDPVPFDMTEFEQLMMEAWAVLSSAEFGSIVEISLK 297

Query: 297 AAVDALIDEMRVQ-SGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVEL 355
           A VD L++ M  + SGGS+  G+PLA+++P+V QM P LL EP  N+ IQ+I+ I EVEL
Sbjct: 298 AVVDTLVELMGTKFSGGSVAGGLPLARVLPQVAQMCPLLLEEPRKNQFIQIIKNIQEVEL 357

Query: 356 FFTLLYANM 364
           FFTLLYANM
Sbjct: 358 FFTLLYANM 366

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449497537|ref|XP_004160430.1| PREDICTED: peroxisome biogenesis protein 3-2-like [Cucumis sativus]

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 218/370 (58%), Positives = 279/370 (75%), Gaps = 6/370 (1%)

Query: 1   MLSLSDFWRRHRRKIFITTGVLGGGYLLYKLYDS-QRRIADLDRQ---QCEHDELLKAQM 56
           M  + DFW+RH+RKI IT GVLG GY LY+ YD   RR+ D+ R+   + E DEL+KAQ+
Sbjct: 1   MFPIRDFWKRHKRKILITAGVLGSGYFLYRQYDYYSRRLHDIQRELDNEREADELIKAQI 60

Query: 57  QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 116
           QAH+E +QRIAD TTLPHA+ +L  RI E+LDLS LT++L+ GK QP TL+ +EKL+LW+
Sbjct: 61  QAHFENIQRIADTTTLPHAIQHLHNRIEEDLDLSHLTERLMMGKGQPNTLTLAEKLDLWE 120

Query: 117 RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQ 176
            LKILSFTK+V++LWA+T++SLYIRVQVNILGRH+YIDTARGLGSS L E+ADLIDR+DQ
Sbjct: 121 NLKILSFTKMVISLWAITVLSLYIRVQVNILGRHMYIDTARGLGSSHLLEEADLIDREDQ 180

Query: 177 QKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGS 236
           QKFLA  D+L NYG+ A+I  +Q A  E LK KQLRD+FNT VL ET  QI+++FMS  S
Sbjct: 181 QKFLAISDFLCNYGLNALIPKLQVAVGEVLKRKQLRDVFNTTVLRETTTQIIKIFMSTAS 240

Query: 237 PHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFK 296
           PH W+D++MP D +     T S  D+       KFD+LM+ETRAVL SAE+ ++++ S +
Sbjct: 241 PHHWLDYVMPGDNQSSITDTLSTDDDAVAPNFNKFDQLMMETRAVLLSAEFGNIMERSLE 300

Query: 297 AAVDALIDEMR--VQSGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVE 354
             VD L++EM   +  G S  SG+PLA+LVPRV QM   LL +P  +R IQ+IR IPEVE
Sbjct: 301 VGVDGLMEEMEASLAGGSSKASGIPLARLVPRVAQMGLLLLEDPIKSRFIQMIRGIPEVE 360

Query: 355 LFFTLLYANM 364
           +FFTLLYANM
Sbjct: 361 IFFTLLYANM 370

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439105|ref|XP_004137328.1| PREDICTED: peroxisome biogenesis protein 3-2-like [Cucumis sativus]

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 217/370 (58%), Positives = 278/370 (75%), Gaps = 6/370 (1%)

Query: 1   MLSLSDFWRRHRRKIFITTGVLGGGYLLYKLYDS-QRRIADLDRQ---QCEHDELLKAQM 56
           M  + DFW+RH+RKI IT GVLG GY LY+ YD   RR+ D+ R+   + E DEL+KAQ+
Sbjct: 1   MFPIRDFWKRHKRKILITAGVLGSGYFLYRQYDYYSRRLHDIQRELDNEREADELIKAQI 60

Query: 57  QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 116
           QAH+E +QRIAD TTLPHA+ +L  RI E+LDLS LT++L+ GK QP TL+ +EKL+LW+
Sbjct: 61  QAHFENIQRIADTTTLPHAIQHLHNRIEEDLDLSHLTERLMMGKGQPNTLTLAEKLDLWE 120

Query: 117 RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQ 176
            LKILSFTK+V++LWA+T++SLYIRVQVNILGRH+YIDTARGLGSS L E+ADLIDR+DQ
Sbjct: 121 NLKILSFTKMVISLWAITVLSLYIRVQVNILGRHMYIDTARGLGSSHLLEEADLIDREDQ 180

Query: 177 QKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGS 236
           QKFLA  D+L NYG+ A+I  +Q A  E LK KQLRD+FNT VL ET  QI+++FMS  S
Sbjct: 181 QKFLAISDFLCNYGLNALIPKLQVAVGEVLKRKQLRDVFNTTVLRETTTQIIKIFMSTAS 240

Query: 237 PHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFK 296
           PH W+D++MP D +     T S  D+       KFD+LM+ETRAVL S E+ ++++ S +
Sbjct: 241 PHHWLDYVMPGDNQSSITDTLSTDDDAVAPNFNKFDQLMMETRAVLLSVEFGNIMERSLE 300

Query: 297 AAVDALIDEMR--VQSGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVE 354
             VD L++EM   +  G S  SG+PLA+LVPRV QM   LL +P  +R IQ+IR IPEVE
Sbjct: 301 VGVDGLMEEMEASLAGGSSKASGIPLARLVPRVAQMGLLLLEDPIKSRFIQMIRGIPEVE 360

Query: 355 LFFTLLYANM 364
           +FFTLLYANM
Sbjct: 361 IFFTLLYANM 370

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22330115|ref|NP_683410.1| peroxin 3 [Arabidopsis thaliana] gi|75160618|sp|Q8S9K7.1|PEX32_ARATH RecName: Full=Peroxisome biogenesis protein 3-2; AltName: Full=Peroxin-3-2; Short=AtPEX3-2 gi|18650624|gb|AAL75911.1| At1g48640/F11I4_17 [Arabidopsis thaliana] gi|21700807|gb|AAM70527.1| At1g48640/F11I4_17 [Arabidopsis thaliana] gi|51968824|dbj|BAD43104.1| unknown protein [Arabidopsis thaliana] gi|332194209|gb|AEE32330.1| peroxin 3 [Arabidopsis thaliana]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/364 (57%), Positives = 279/364 (76%), Gaps = 14/364 (3%)

Query: 7   FWRRHRRKIFITTGVLGGGYLLYKLYDSQ-RRIADLDRQ---QCEHDELLKAQMQAHYEE 62
           FWR+HRRK+ +T G LG GYLLYKLY+S  RR+ADL+R+   + E+DE++K QM+AH+E 
Sbjct: 7   FWRKHRRKVLVTAGCLGSGYLLYKLYNSHTRRLADLERELAHERENDEIIKTQMKAHFES 66

Query: 63  VQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILS 122
           +Q I D+TTLPHAM +LSIRI+EE+D+S + D+L +GK     LS  EKL+LWD LKILS
Sbjct: 67  IQMIVDSTTLPHAMQFLSIRISEEIDVSHVMDRLNQGKGM---LSPPEKLQLWDELKILS 123

Query: 123 FTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQQKFLAS 182
           FT++V++LW+VTM+SLYIRVQVNILGRHLY+DTAR LGSS L E+ DLIDRDD+QKFL+S
Sbjct: 124 FTRMVLSLWSVTMLSLYIRVQVNILGRHLYVDTARALGSSHLLEEVDLIDRDDEQKFLSS 183

Query: 183 VDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVD 242
            D+L    M ++IS++Q +A+E LKGKQL+D+  T VL ET MQI++VFMS GSPH WVD
Sbjct: 184 ADFLVTNAMPSLISDMQGSAEEVLKGKQLKDVITTRVLQETVMQIVDVFMSTGSPHHWVD 243

Query: 243 FL-MPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDA 301
           +L MPQD +  +  T+   DE      +KF +LMVETR VL S E+T++V++S K   D 
Sbjct: 244 YLMMPQDTKLSR-TTSDSSDE----AVSKFHQLMVETREVLISTEFTNIVEISLKCFTDV 298

Query: 302 LIDEMRVQS-GGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLL 360
           L++EM  Q+  G L +G PLAK++P++ +    + AEPS NR +Q+IR +PEV+LFFTLL
Sbjct: 299 LVEEMETQTEAGGLATGKPLAKVLPQIEKTMNVITAEPSKNRFLQIIRDLPEVKLFFTLL 358

Query: 361 YANM 364
           YANM
Sbjct: 359 YANM 362

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	367
TAIR|locus:504956187	400	PEX3 "AT1G48635" [Arabidopsis	0.531	0.487	0.529	1.1e-99
TAIR|locus:2092747	376	PEX3-1 "AT3G18160" [Arabidopsi	0.931	0.909	0.536	3.8e-94
UNIPROTKB|Q60HE1	373	PEX3 "Peroxisomal biogenesis f	0.923	0.908	0.260	6.8e-24
UNIPROTKB|Q9JJK3	373	PEX3 "Peroxisomal biogenesis f	0.920	0.906	0.262	6.8e-24
UNIPROTKB|P56589	373	PEX3 "Peroxisomal biogenesis f	0.923	0.908	0.260	1.4e-23
UNIPROTKB|A6H7C2	373	PEX3 "Peroxisomal biogenesis f	0.915	0.900	0.255	4.8e-23
UNIPROTKB|F1N5H3	373	PEX3 "Peroxisomal biogenesis f	0.915	0.900	0.255	4.8e-23
MGI|MGI:1929646	372	Pex3 "peroxisomal biogenesis f	0.912	0.900	0.264	7.8e-23
UNIPROTKB|E2R9C7	373	PEX3 "Uncharacterized protein"	0.915	0.900	0.255	1.3e-22
ZFIN|ZDB-GENE-040426-979	364	pex3 "peroxisomal biogenesis f	0.929	0.936	0.270	1.3e-22

TAIR|locus:504956187 PEX3 "AT1G48635" [Arabidopsis thaliana (taxid:3702)]

 Score = 541 (195.5 bits), Expect = 1.1e-99, Sum P(2) = 1.1e-99
 Identities = 107/202 (52%), Positives = 146/202 (72%)

Query:   165 PEDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETF 224
             PE+ DLIDRDD+QKFL+S D+L    M ++IS++Q +A+E LKGKQL+D+  T VL ET 
Sbjct:   202 PEEVDLIDRDDEQKFLSSADFLVTNAMPSLISDMQGSAEEVLKGKQLKDVITTRVLQETV 261

Query:   225 MQILEVFMSMGSPHQWVDFLM-PQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLS 283
             MQI++VFMS GSPH WVD+LM PQD +  +  T+   DE      +KF +LMVETR VL 
Sbjct:   262 MQIVDVFMSTGSPHHWVDYLMMPQDTKLSR-TTSDSSDEAV----SKFHQLMVETREVLI 316

Query:   284 SAEYTSVVDMSFKAAVDALIDEMRVQS-GGSLISGMPLAKLVPRVVQMSPSLLAEPSNNR 342
             S E+T++V++S K   D L++EM  Q+  G L +G PLAK++P++ +    + AEPS NR
Sbjct:   317 STEFTNIVEISLKCFTDVLVEEMETQTEAGGLATGKPLAKVLPQIEKTMNVITAEPSKNR 376

Query:   343 IIQVIRTIPEVELFFTLLYANM 364
              +Q+IR +PEV+LFFTLLYANM
Sbjct:   377 FLQIIRDLPEVKLFFTLLYANM 398

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005777 "peroxisome" evidence=ISS

GO:0005779 "integral to peroxisomal membrane" evidence=IEA

GO:0007031 "peroxisome organization" evidence=IEA;IMP

TAIR|locus:2092747 PEX3-1 "AT3G18160" [Arabidopsis thaliana (taxid:3702)]

 Score = 937 (334.9 bits), Expect = 3.8e-94, P = 3.8e-94
 Identities = 193/360 (53%), Positives = 258/360 (71%)

Query:    10 RHRRKIFITTXXXXXXXXXXXXXDSQ-RRIADLDRQ---QCEHDELLKAQMQAHYEEVQR 65
             +HRRKI +TT             ++  R++ADL+R+   + E+DE++K QM+AH++ +Q 
Sbjct:    28 KHRRKILVTTTCLGSGYLLYKLYNAHTRKLADLERELANERENDEIIKTQMKAHFDNIQM 87

Query:    66 IADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSFTK 125
             IAD TTLPHA+H+LS R+ EE+D+S + DKL +GK     L  SEKL+LW+ LKILSFT+
Sbjct:    88 IADTTTLPHAIHHLSSRVVEEIDVSSIMDKLSKGKG---ILIPSEKLQLWNELKILSFTR 144

Query:   126 LVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQQKFLASVDY 185
             +V++LW+VTM+SLYIRVQVNILGRHLYIDTARGLGSS L ++ DLI+RDD+QKFL S D+
Sbjct:   145 MVLSLWSVTMLSLYIRVQVNILGRHLYIDTARGLGSSHLLDELDLIERDDEQKFLTSADF 204

Query:   186 LANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFLM 245
             LA  GM ++ISN+Q A  E LKGKQL+D+  T  L ET M+IL+VFMS GSPH WVD+LM
Sbjct:   205 LATSGMPSLISNMQNAVKEVLKGKQLKDVLTTSALRETVMRILDVFMSTGSPHHWVDYLM 264

Query:   246 -PQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALID 304
               QD         S  D T     TKF  L+ ETR VL+S ++++V ++S K    AL++
Sbjct:   265 MSQDAT----TDVSSSDATV----TKFHLLITETREVLTSNDFSNVAEISLKCCAVALVE 316

Query:   305 EMRVQSGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLLYANM 364
             EM  Q+G  L +GM LAKL+P++ +  P + AEP  NR +Q+IR +PEV+LFFTLLYANM
Sbjct:   317 EMETQTG--LATGMQLAKLLPQIEKTMPEISAEPEKNRFLQLIRDLPEVKLFFTLLYANM 374

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005777 "peroxisome" evidence=ISS

GO:0005779 "integral to peroxisomal membrane" evidence=IEA

GO:0007031 "peroxisome organization" evidence=IEA;IMP

UNIPROTKB|Q60HE1 PEX3 "Peroxisomal biogenesis factor 3" [Macaca fascicularis (taxid:9541)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 101/387 (26%), Positives = 195/387 (50%)

Query:     3 SLSDFWRRHRRK-IFITTXXXXXXXXXXXXXDSQRRIADL-DRQQCEHDELLKAQMQAHY 60
             S+ +F +RH++K IF+ T               Q++I ++ +R+  E+  + +A+ Q H+
Sbjct:     4 SVWNFLKRHKKKCIFLGTVLGGVYILGKY---GQKKIREIQEREAAEY--IAQARRQYHF 58

Query:    61 EEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKI 120
             E  QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+ LKI
Sbjct:    59 ESNQRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KNRP-----SNKLEIWEDLKI 109

Query:   121 LSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQQKFL 180
             +SFT+ +VA+++  M+ + +RVQ+NI+G ++Y+D A  +G +       L   D QQ++L
Sbjct:   110 ISFTRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKNGT---TILAPPDVQQQYL 165

Query:   181 ASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQW 240
             +S+ +L   G+  +I+ ++ A  + L    L+   + + L +   +I  + +       W
Sbjct:   166 SSIQHLLGDGLTELITVIKQAVQKILGSVSLKHSLSLLDLEQKLKEIRNL-VEQHKSSSW 224

Query:   241 VDFLMPQDIRFYKLVTASGHDETTLS----GATKFD----ELMVETRAVLSSAEYTSVVD 292
             ++    + +  + ++     +ET L+    G +  D    +L+ ETR +L S ++++V++
Sbjct:   225 INKDGSKSLLCHYMMP---DEETPLAVQACGLSPRDITTIKLLNETRDMLESPDFSTVLN 281

Query:   293 MSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMSPSLLAE-P 338
                      L+D M          +Q G S+ S     +PLAK++P V     S+ +E P
Sbjct:   282 TCLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIVNGQIHSVCSETP 341

Query:   339 SNNRIIQVIRTIPEVELFFTLLYANMS 365
             S+   +Q + T+ +V+ F   +Y   S
Sbjct:   342 SH--FVQDLLTMEQVKDFAANVYEAFS 366

GO:0005777 "peroxisome" evidence=ISS

GO:0005779 "integral to peroxisomal membrane" evidence=ISS

GO:0007031 "peroxisome organization" evidence=ISS

GO:0045046 "protein import into peroxisome membrane" evidence=ISS

UNIPROTKB|Q9JJK3 PEX3 "Peroxisomal biogenesis factor 3" [Cricetulus longicaudatus (taxid:10030)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 102/388 (26%), Positives = 190/388 (48%)

Query:     3 SLSDFWRRHRRK-IFITTXXXXXXXXXXXXXDSQRRIADL-DRQQCEHDELLKAQMQAHY 60
             S+ +F +RH++K IF+ T               Q++I ++ +R+  E+  + +A+ Q H+
Sbjct:     4 SMWNFLKRHKKKCIFLGTVLGGVYILGKY---GQKKIREIQEREAAEY--IAQARRQYHF 58

Query:    61 EEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKI 120
             E  QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+ LKI
Sbjct:    59 ESNQRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KNRP-----SNKLEIWEDLKI 109

Query:   121 LSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQQKFL 180
             +SFT+ +VA+++  M+ + +RVQ+NI+G ++Y+D A  +G +       L   D QQ++L
Sbjct:   110 ISFTRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNAT-VGKNGTTV---LAPPDVQQQYL 165

Query:   181 ASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQW 240
             +S+ +L   G+  +++ ++ A    L    L+   + + L +   +I  +     SP  W
Sbjct:   166 SSIQHLLGDGLTELVTVIKQAVQRILGSVSLKHSLSLLDLEQKLKEIRILVEQHRSP-SW 224

Query:   241 VDFLMPQDIRFYKLVTASGHDETTLSGATKFD---------ELMVETRAVLSSAEYTSVV 291
             +D    +D+    L      DE T   A  +          +L+ ETR +L S ++++V+
Sbjct:   225 ID----KDVSKSSLCQYMMPDEETPLAAQAYGLSPRDITTIKLLNETRDMLESPDFSTVL 280

Query:   292 DMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMSPSLLAE- 337
             +         L+D M          +Q G S+ S     +PLAK++P V     S+ ++ 
Sbjct:   281 NTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSINSLSSVSLPLAKIIPIVNGQIHSVCSDT 340

Query:   338 PSNNRIIQVIRTIPEVELFFTLLYANMS 365
             PS+   +Q +  + +V+ F   +Y   S
Sbjct:   341 PSH--FVQDLLMMEQVKDFAANVYEAFS 366

GO:0005777 "peroxisome" evidence=ISS

GO:0005779 "integral to peroxisomal membrane" evidence=ISS

GO:0007031 "peroxisome organization" evidence=ISS

GO:0045046 "protein import into peroxisome membrane" evidence=ISS

UNIPROTKB|P56589 PEX3 "Peroxisomal biogenesis factor 3" [Homo sapiens (taxid:9606)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 101/387 (26%), Positives = 194/387 (50%)

Query:     3 SLSDFWRRHRRK-IFITTXXXXXXXXXXXXXDSQRRIADL-DRQQCEHDELLKAQMQAHY 60
             S+ +F +RH++K IF+ T               Q++I ++ +R+  E+  + +A+ Q H+
Sbjct:     4 SVWNFLKRHKKKCIFLGTVLGGVYILGKY---GQKKIREIQEREAAEY--IAQARRQYHF 58

Query:    61 EEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKI 120
             E  QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+ LKI
Sbjct:    59 ESNQRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KNRP-----SNKLEIWEDLKI 109

Query:   121 LSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQQKFL 180
             +SFT+  VA+++  M+ + +RVQ+NI+G ++Y+D A  +G +       L   D QQ++L
Sbjct:   110 ISFTRSTVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKNGT---TILAPPDVQQQYL 165

Query:   181 ASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQW 240
             +S+ +L   G+  +I+ ++ A  + L    L+   + + L +   +I  + +       W
Sbjct:   166 SSIQHLLGDGLTELITVIKQAVQKVLGSVSLKHSLSLLDLEQKLKEIRNL-VEQHKSSSW 224

Query:   241 VDFLMPQDIRFYKLVTASGHDETTLS----GATKFD----ELMVETRAVLSSAEYTSVVD 292
             ++    + +  + ++     +ET L+    G +  D    +L+ ETR +L S ++++V++
Sbjct:   225 INKDGSKPLLCHYMMP---DEETPLAVQACGLSPRDITTIKLLNETRDMLESPDFSTVLN 281

Query:   293 MSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMSPSLLAE-P 338
                      L+D M          +Q G S+ S     +PLAK++P V     S+ +E P
Sbjct:   282 TCLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIVNGQIHSVCSETP 341

Query:   339 SNNRIIQVIRTIPEVELFFTLLYANMS 365
             S+   +Q + T+ +V+ F   +Y   S
Sbjct:   342 SH--FVQDLLTMEQVKDFAANVYEAFS 366

GO:0005829 "cytosol" evidence=IEA

GO:0016557 "peroxisome membrane biogenesis" evidence=IEA

GO:0005779 "integral to peroxisomal membrane" evidence=IDA

GO:0007031 "peroxisome organization" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005777 "peroxisome" evidence=IDA;IMP

GO:0045046 "protein import into peroxisome membrane" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0008289 "lipid binding" evidence=IDA

GO:0046983 "protein dimerization activity" evidence=IDA

GO:0005778 "peroxisomal membrane" evidence=IDA;TAS

GO:0043234 "protein complex" evidence=IDA

GO:0032994 "protein-lipid complex" evidence=IDA

GO:0055085 "transmembrane transport" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|A6H7C2 PEX3 "Peroxisomal biogenesis factor 3" [Bos taurus (taxid:9913)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 98/384 (25%), Positives = 193/384 (50%)

Query:     6 DFWRRHRRK-IFITTXXXXXXXXXXXXXDSQRRIADL-DRQQCEHDELLKAQMQAHYEEV 63
             +F +RH++K IF+ T               Q++I ++ +R+  E+  + +A+ Q H+E  
Sbjct:     7 NFLKRHKKKCIFLGTVLGGVYILGKY---GQKKIREIQEREAAEY--IAQARRQYHFESN 61

Query:    64 QRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSF 123
             QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+ LKI+SF
Sbjct:    62 QRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KTRP-----SNKLEIWEDLKIISF 112

Query:   124 TKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQQKFLASV 183
             T+ +VA+++  M+ + +RVQ+NI+G ++Y+D A  +G +       L   D QQ++L+S+
Sbjct:   113 TRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKNGTTV---LAPPDVQQQYLSSI 168

Query:   184 DYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDF 243
              +L   G+  +I+ ++ A  + L    L+   + + L +   +I ++ +       W++ 
Sbjct:   169 QHLLGDGLTELITVIKQAVQKILGSVSLKHSLSLLDLEQKLKEIRDL-VEQHKSSSWINN 227

Query:   244 LMPQDIRFYKLVTASGHDETTLS----GATKFD----ELMVETRAVLSSAEYTSVVDMSF 295
                + +  + ++     +ET L+    G +  D    +L+ ETR +L S ++++V++   
Sbjct:   228 DGSKSLLCHYMMP---DEETPLAVQACGLSPRDVTTIKLLNETRDMLESPDFSTVLNTCL 284

Query:   296 KAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMSPSLLAE-PSNN 341
                   L+D M          +Q G S+ S     +PLAK++P +     S+ +E PS+ 
Sbjct:   285 SRGFSRLLDNMAEFFRPTEQDLQHGNSINSLSSVSLPLAKIIPIINGQIHSVCSETPSH- 343

Query:   342 RIIQVIRTIPEVELFFTLLYANMS 365
               +Q +  + +V+ F   +Y   S
Sbjct:   344 -FVQDLLMMEQVKDFAANVYEAFS 366

GO:0007031 "peroxisome organization" evidence=IEA

GO:0005779 "integral to peroxisomal membrane" evidence=IEA

UNIPROTKB|F1N5H3 PEX3 "Peroxisomal biogenesis factor 3" [Bos taurus (taxid:9913)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 98/384 (25%), Positives = 193/384 (50%)

Query:     6 DFWRRHRRK-IFITTXXXXXXXXXXXXXDSQRRIADL-DRQQCEHDELLKAQMQAHYEEV 63
             +F +RH++K IF+ T               Q++I ++ +R+  E+  + +A+ Q H+E  
Sbjct:     7 NFLKRHKKKCIFLGTVLGGVYILGKY---GQKKIREIQEREAAEY--IAQARRQYHFESN 61

Query:    64 QRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSF 123
             QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+ LKI+SF
Sbjct:    62 QRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KTRP-----SNKLEIWEDLKIISF 112

Query:   124 TKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQQKFLASV 183
             T+ +VA+++  M+ + +RVQ+NI+G ++Y+D A  +G +       L   D QQ++L+S+
Sbjct:   113 TRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKNGTTV---LAPPDVQQQYLSSI 168

Query:   184 DYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDF 243
              +L   G+  +I+ ++ A  + L    L+   + + L +   +I ++ +       W++ 
Sbjct:   169 QHLLGDGLTELITVIKQAVQKILGSVSLKHSLSLLDLEQKLKEIRDL-VEQHKSSSWINN 227

Query:   244 LMPQDIRFYKLVTASGHDETTLS----GATKFD----ELMVETRAVLSSAEYTSVVDMSF 295
                + +  + ++     +ET L+    G +  D    +L+ ETR +L S ++++V++   
Sbjct:   228 DGSKSLLCHYMMP---DEETPLAVQACGLSPRDVTTIKLLNETRDMLESPDFSTVLNTCL 284

Query:   296 KAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMSPSLLAE-PSNN 341
                   L+D M          +Q G S+ S     +PLAK++P +     S+ +E PS+ 
Sbjct:   285 SRGFSRLLDNMAEFFRPTEQDLQHGNSINSLSSVSLPLAKIIPIINGQIHSVCSETPSH- 343

Query:   342 RIIQVIRTIPEVELFFTLLYANMS 365
               +Q +  + +V+ F   +Y   S
Sbjct:   344 -FVQDLLMMEQVKDFAANVYEAFS 366

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0045046 "protein import into peroxisome membrane" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0032994 "protein-lipid complex" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005779 "integral to peroxisomal membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1929646 Pex3 "peroxisomal biogenesis factor 3" [Mus musculus (taxid:10090)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 103/390 (26%), Positives = 190/390 (48%)

Query:     3 SLSDFWRRHRRK-IFITTXXXXXXXXXXXXXDSQRRIADL-DRQQCEHDELLKAQMQAHY 60
             S+ +F +RH++K IF+ T               Q++I ++ +R+  E+  + +A+ Q H+
Sbjct:     4 SMWNFLKRHKKKCIFLGTVLGGVYILGKY---GQKKIREIQEREAAEY--IAQARRQYHF 58

Query:    61 EEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKI 120
             E  QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+ LKI
Sbjct:    59 ESNQRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KSRP-----SNKLEIWEDLKI 109

Query:   121 LSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQQKFL 180
             +SFT+ +VA+++  M+ + +RVQ+NI+G ++Y+D A  +G +       L   D QQ++L
Sbjct:   110 ISFTRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNAT-VGKNGTTV---LAPPDVQQQYL 165

Query:   181 ASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQ- 239
             +S+ +L   G+  +++ ++ A    L    L+   + + L +   +I  + +     HQ 
Sbjct:   166 SSIQHLLGDGLTELVTVIKQAVQRILGSVSLKHSLSLLDLEQKLKEI-RILVEQ---HQS 221

Query:   240 -WVDFLMPQDIRFYKLVTASGHDETTLSGATKFD---------ELMVETRAVLSSAEYTS 289
              W D    +D+    L      DE T   A  +          +L+ ETR +L S ++++
Sbjct:   222 SWND----KDVSRSSLCQYMMPDEETPLAAQAYGLSHRDITTIKLLNETRDMLESPDFST 277

Query:   290 VVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMSPSLLA 336
             V++         L+D M          +Q G S+ S     +PLAK++P V     S+ +
Sbjct:   278 VLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSINSLSSVSLPLAKIIPIVNGQIHSVCS 337

Query:   337 E-PSNNRIIQVIRTIPEVELFFTLLYANMS 365
             E PS+   +Q +  + +V+ F   +Y   S
Sbjct:   338 ETPSH--FVQDLLMMEQVKDFAANVYEAFS 365

GO:0005777 "peroxisome" evidence=ISO

GO:0005778 "peroxisomal membrane" evidence=ISO

GO:0005779 "integral to peroxisomal membrane" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0007031 "peroxisome organization" evidence=ISO

GO:0008289 "lipid binding" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016557 "peroxisome membrane biogenesis" evidence=ISO

GO:0032994 "protein-lipid complex" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0045046 "protein import into peroxisome membrane" evidence=ISO

GO:0046983 "protein dimerization activity" evidence=ISO

UNIPROTKB|E2R9C7 PEX3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 98/384 (25%), Positives = 191/384 (49%)

Query:     6 DFWRRHRRK-IFITTXXXXXXXXXXXXXDSQRRIADL-DRQQCEHDELLKAQMQAHYEEV 63
             +F +RH++K IF+ T               Q++I ++ +R+  E+  + +A+ Q H+E  
Sbjct:     7 NFLKRHKKKCIFLGTVLGGVYILGKY---GQKKIREIQEREAAEY--IAQARRQYHFESN 61

Query:    64 QRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSF 123
             QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+ LKI+SF
Sbjct:    62 QRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KNRP-----SNKLEIWEDLKIISF 112

Query:   124 TKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQQKFLASV 183
             T+ +VA+++  M+ + +RVQ+NI+G ++Y+D A  +G +       L   D QQ++L+S+
Sbjct:   113 TRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKNGTTV---LAPPDVQQQYLSSI 168

Query:   184 DYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDF 243
              +L   G+  +I+ ++ A  + L    L+   + + L +   +I  + +       W++ 
Sbjct:   169 QHLLGDGLTELITVIKQAVQKILGSVSLKHSLSLLDLEQKLKEIRNL-VEQHKSSSWINK 227

Query:   244 LMPQDIRFYKLVTASGHDETTLS----GATKFD----ELMVETRAVLSSAEYTSVVDMSF 295
                + +  + ++     +ET L+    G +  D    +L+ ETR +L S ++++V++   
Sbjct:   228 DESKSLLCHYMMP---DEETPLAVQACGLSPRDVTTIKLLNETRDMLESPDFSTVLNTCL 284

Query:   296 KAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMSPSLLAE-PSNN 341
                   L+D M          +Q   S+ S     +PLAK++P V     S+ +E PS+ 
Sbjct:   285 NRGFSRLLDNMAEFFRPTEQDLQHSNSMSSLSSVSLPLAKIIPIVNGQIHSVCSETPSH- 343

Query:   342 RIIQVIRTIPEVELFFTLLYANMS 365
               +Q +  + +V+ F   +Y   S
Sbjct:   344 -FVQDLLMMEQVKDFAANVYEAFS 366

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0045046 "protein import into peroxisome membrane" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0032994 "protein-lipid complex" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005779 "integral to peroxisomal membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-040426-979 pex3 "peroxisomal biogenesis factor 3" [Danio rerio (taxid:7955)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 103/381 (27%), Positives = 184/381 (48%)

Query:     1 MLSLS-DFWRRHRRKIFITTXXXXXXXXXXXXXDSQRRIADL-DRQQCEHDELLKAQMQA 58
             MLS + +F +RH+RK FI T              +QR+I ++ +R+  E+  + +A+ Q 
Sbjct:     1 MLSSTWNFIKRHKRK-FIFTGVFVGGVYLLGKY-AQRKIQEMQEREAAEY--IAQARRQF 56

Query:    59 HYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRL 118
             H+E  QR  + T L   +  L   I   L+   LT  L   K +P     + KLE+W+ L
Sbjct:    57 HFESNQRTCNMTVLS-MLPTLREAIIHHLNSESLTTLL---KTKP-----ANKLEIWEDL 107

Query:   119 KILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQQK 178
             KI+SFT+ +VA+++  M+ + +RVQ+NI+G +LY+D +  +  + +     L   D QQ+
Sbjct:   108 KIISFTRSIVAVYSTCMLVVLLRVQLNIIGGYLYLDNS--VTKNGM---TPLAPPDVQQQ 162

Query:   179 FLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPH 238
             +L+S+ +L   G+  +I+ V+ A  E      L+   +   L +   QI ++     S +
Sbjct:   163 YLSSIQHLLGEGLMELITVVKKAVQEVFGLVSLKQSLSLQELEQQLTQIRQLVEDDSSKY 222

Query:   239 QWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVV----DMS 294
             + + + M  D        A G  E  ++      +L+ ETR +L S ++  V+    +  
Sbjct:   223 KGLSWYMMPDEENTLASQACGLTENDVTTI----KLLNETRDMLESPDFNIVLHTCLNRG 278

Query:   295 FKAAVDALIDEMRVQSGGSLISG---------MPLAKLVPRVVQMSPSLLAE-PSNNRII 344
             F   +D + +  R     S  S          +PLAK++P +     S+ +E PS+   +
Sbjct:   279 FVRFLDNMAEFFRPPQRDSTPSSTPDQLSHVSLPLAKIIPIINGQIHSICSEIPSH--FV 336

Query:   345 QVIRTIPEVELFFTLLYANMS 365
             Q +  I +V+ F   +Y   S
Sbjct:   337 QDLLLIDQVKEFAANVYETFS 357

GO:0007031 "peroxisome organization" evidence=IEA

GO:0005779 "integral to peroxisomal membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8S9K7	PEX32_ARATH	No assigned EC number	0.5769	0.9536	0.9615	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_XII0062 hypothetical protein (374 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	367
pfam04882	399	pfam04882, Peroxin-3, Peroxin-3	1e-79

>gnl|CDD|218308 pfam04882, Peroxin-3, Peroxin-3

 Score =  249 bits (637), Expect = 1e-79
 Identities = 116/416 (27%), Positives = 188/416 (45%), Gaps = 69/416 (16%)

Query: 1   MLSLSDFWRRHRRKIFITTGVLGGGYLLY-----KLYDSQRRIADLDRQQCEHDELLKAQ 55
           + S   F RRHRRK  +T GV+GGGYLL      KL + Q R+A         +   K Q
Sbjct: 1   LSSTRSFLRRHRRKFIVTGGVIGGGYLLTQYVQKKLREFQERLA--------EERFAKEQ 52

Query: 56  MQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGK--------------- 100
           ++  +E+ QR  + T L   +  LS  I E L +  +T+KL + K               
Sbjct: 53  IKRRFEQTQRDCNYTVLAL-LPTLSEPILEALPVEEITEKLQQKKAESAARTGENSDSEL 111

Query: 101 ----------EQPYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRH 150
                       P   S   KLELW+ LKI S T+L+  +++++M++L  R+Q+NILGR 
Sbjct: 112 TSASASEADESSPSPYSPKSKLELWNELKIKSITRLITLVYSLSMLTLLTRLQLNILGRR 171

Query: 151 LYIDTARGLGSSDLPEDADLI---DRDDQQKFLASVDYLANYGMQAMISNVQAAADEALK 207
            Y+D+A  L S    E++DLI   D + +Q +L+   +L N G   +I  V+ A +E   
Sbjct: 172 SYLDSAISLASGTENEESDLISGSDYETEQAYLSLSWWLLNKGWLDLIDRVEKAVEEVFG 231

Query: 208 GKQLRDIFNTVVLHETFMQILEVFMSMGSPHQ--WVDFLMPQDIRFYKLVTASGHDETTL 265
           G   +D  +     E   +I  +  S     +   + +L+P D         S  D    
Sbjct: 232 GINPKDELSLAEFEELLKEIRNLVNSSDENKERSILKYLLPND----LPTPLSSLDIND- 286

Query: 266 SGATKFDELMVETRAVLSSAEYTSV----VDMSFKAAVDALIDEMRVQSGGSLISG---- 317
              +K  +L+ ETR +L S +++ V    VD  F   +D L + +  +S  +        
Sbjct: 287 ---SKLRKLLNETRDILESPDFSDVLESLVDEGFSTLLDNLAESLAFKSLPTSQDSLNVE 343

Query: 318 ---------MPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLLYANM 364
                      LAKL+P + +    +L   S N  +Q + ++ E++ F   +Y+N 
Sbjct: 344 SIVDLPSVKFKLAKLLPVINRQIHVILNNDSPNEYLQALNSVEELKDFSASVYSNF 399

Peroxin-3 is a peroxisomal protein. It is thought to be involve in membrane vesicle assembly prior to the translocation of matrix proteins. Length = 399

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	367
PF04882	432	Peroxin-3: Peroxin-3; InterPro: IPR006966 Peroxin	100.0
KOG4444	359	consensus Peroxisomal assembly protein PEX3 [Cell	100.0

>PF04882 Peroxin-3: Peroxin-3; InterPro: IPR006966 Peroxin 3 (Pex3p), also known as Peroxisomal biogenesis factor 3, has been identified and characterised as a peroxisomal membrane protein in yeasts and mammals []

Probab=100.00  E-value=3.6e-96  Score=742.99  Aligned_cols=359  Identities=34%  Similarity=0.553  Sum_probs=252.9

Q ss_pred             cchhHHHHHhcCCeEEeeeeeeeeeehhHhhHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 017709            2 LSLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADLDRQQCEHDELLKAQMQAHYEEVQRIADATTLPHAMHYLSI   81 (367)
Q Consensus         2 ~s~~~f~~RhR~k~~i~~~v~G~~y~l~~y~~~~~kl~e~q~~~~~~e~~~ke~lrr~Feq~Q~~c~~t~l~~llp~l~~   81 (367)
                      .|+|+||+||||||++|||++||||++++|  .++|+.|+| ++...|+++|||+||||||||+||++||+ +|||+|++
T Consensus         2 ~~~~~f~~Rhr~k~~~~~~v~g~~y~~~~y--~~~kl~e~q-~~~~~e~~~ke~~~r~Feq~q~~c~~tv~-~llp~l~~   77 (432)
T PF04882_consen    2 SSLRSFFRRHRRKIIVTGGVVGGGYLLYQY--AQKKLREQQ-ERMAEERFAKEQLRRRFEQTQRDCDFTVL-ALLPTLSE   77 (432)
T ss_dssp             ----------------------------------------H-HHHHHHHHHHHCHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             Cccccccccccccccccccccccccccccc--ccccccccc-ccccccccccccccccccccccccccccc-cccccccc
Confidence            489999999999999999999999999998  446899997 45677999999999999999999999886 89999999


Q ss_pred             HHHHhcCchHHHHHHHccCCCCC-----------------------------------CCCchhHHHHHHHHHHHHHHHH
Q 017709           82 RIAEELDLSPLTDKLLRGKEQPY-----------------------------------TLSSSEKLELWDRLKILSFTKL  126 (367)
Q Consensus        82 ~I~~~ldve~it~~Lk~~k~~~~-----------------------------------~l~~~~K~eLW~eLKi~sftR~  126 (367)
                      +|++++|+|+||++||++|+++.                                   ..++++|+||||||||+||||+
T Consensus        78 ~i~~~ld~e~i~~~L~~~k~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~K~eLW~eLKi~sftR~  157 (432)
T PF04882_consen   78 RILEELDVEEITEELKQKKAQRKARQAAQSDSESSDSELTSDNLSSASEANESSSKSSPLSPKSKLELWNELKIKSFTRT  157 (432)
T ss_dssp             HHHHHS-HHHHHHHHCT---------------------------------------------SSHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCchHHHHHHHHHHHHHHHHH
Confidence            99999999999999999987432                                   2358999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCC----------CCCCCChHHHHHHHHHHHHHHHhhHHHHHH
Q 017709          127 VVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPE----------DADLIDRDDQQKFLASVDYLANYGMQAMIS  196 (367)
Q Consensus       127 ~t~iY~~slL~Ll~riQLNILgr~~Yl~s~~~~~~~~~~~----------~~~~~~~~~eq~yLs~s~~ll~~G~~~l~~  196 (367)
                      +|++|++|||+|+||+||||||||.|++|+...+++....          .....+.++||+|||+||||||+||.++++
T Consensus       158 vt~iY~~slL~LltRvQLNILGR~~Yl~S~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~eq~fLs~swwLL~~Gw~~l~~  237 (432)
T PF04882_consen  158 VTLIYALSLLTLLTRVQLNILGRRLYLDSVISLASEQENSNSSLISLESSSARGVDYETEQKFLSLSWWLLNRGWKELIE  237 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC----HHTSSSSS---SS-----------HHHHHHHHGGGHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCccccccccccccccccHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            9999999999999999999999999999987654332211          122456899999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCcccCHHHHHHHHHHHHHHHhc--CC----Ccccccccccccch-hhhhhhcc---CCCCccccc
Q 017709          197 NVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMS--MG----SPHQWVDFLMPQDI-RFYKLVTA---SGHDETTLS  266 (367)
Q Consensus       197 ~V~~~V~~vf~~~~lk~~ls~~el~~l~~~i~~~~e~--~~----~~~~~~~~LLP~~~-~~~~~~~~---~~~~~~~~~  266 (367)
                      +|+++|++||++++||+.+|++||++++++||..|++  +.    ..++|++||||+.. +.+++...   +++......
T Consensus       238 ~Ve~aV~~vf~~~~lkd~lsl~e~~~ll~~Ir~~ve~~~~~~~~~~~~~~~~~LLP~~~~e~~~L~~~~~~~~~~~~~~~  317 (432)
T PF04882_consen  238 RVEEAVEEVFGSISLKDELSLEEFSELLWQIRKRVESSSDTSDSRPRSNWLSYLLPPEEEEDFVLQQTGDNPSSLSSLPQ  317 (432)
T ss_dssp             HHHHHHHHHHTTS-TT-EEEHHHHHHHHHHHHHHHHT------------CHHHCS----TTS-GGGTS-------TT--C
T ss_pred             HHHHHHHHHhCCCCcCcccCHHHHHHHHHHHHHHHHhhcCCccccchhhHHHhhCCCCchhHHHHHhcccccccccCCCC
Confidence            9999999999999999999999999999999999987  21    14689999999643 34444332   223333346


Q ss_pred             chhHHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHhhcCC-----------------CCCCCCcccchhhhhhh
Q 017709          267 GATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGG-----------------SLISGMPLAKLVPRVVQ  329 (367)
Q Consensus       267 ~~~~l~~Ll~ET~d~leS~~f~~Vl~~~l~~~f~~l~~~~~~~~~~-----------------~~~~~~~LAkllP~v~~  329 (367)
                      +++.|++|+|||+|+||||+|++|++.|+|++|+.+++++.+.+.+                 .++.++||||+||++++
T Consensus       318 ~~~~l~~Ll~ET~d~leS~~f~~Vl~~~l~~~f~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LAklLp~l~~  397 (432)
T PF04882_consen  318 DDSILRQLLDETRDVLESPDFSHVLESCLDEGFSTLMDNLEASFGSKSPSSPQSDLDQEEEVDIPKKKIPLAKLLPILNR  397 (432)
T ss_dssp             CHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHCCG-----------------------EEEHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCCcccccCCCCCcchHHHHHHHHHH
Confidence            7899999999999999999999999999999999999999876622                 12346999999999999


Q ss_pred             hcccccCCCCchHHHHHHcCchhHHHHHHHHhcCC
Q 017709          330 MSPSLLAEPSNNRIIQVIRTIPEVELFFTLLYANM  364 (367)
Q Consensus       330 ~~~~l~~~~~~n~~l~~l~~~~el~~f~A~vYs~~  364 (367)
                      |+|.++.++.||+|++.|.+++||++|||+||+||
T Consensus       398 q~~~i~~~~~~N~yl~~l~~v~eL~~fsA~VYsnF  432 (432)
T PF04882_consen  398 QSHVILNGPMPNEYLQRLNSVPELEDFSASVYSNF  432 (432)
T ss_dssp             THHHHT-TT-TTCHHHHHHT-HHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCChhHHHHHHHccHHHHHHhHHHhhcC
Confidence            99999876669999999999999999999999986

Two putative peroxisomal membrane-bound Pex3p homologues have also been found in Arabidopsis thaliana []. They possess a membrane peroxisomal targeting signal. Pex3p is an integral membrane protein of peroxisomes, exposing its N- and C-terminal parts to the cytosol []. Peroxin is involved in peroxisome biosynthesis and integrity; it assembles membrane vesicles before the matrix proteins are translocated. In humans, defects in PEX3 are the cause of peroxisome biogenesis disorders [], which include Zellweger syndrome (ZWS), neonatal adrenoleukodystrophy (NALD), infantile Refsum disease (IRD), and classical rhizomelic chondrodysplasia punctata (RCDP). These are peroxisomal disorders that are the result of proteins failing to be imported into the peroxisome.; GO: 0007031 peroxisome organization, 0005779 integral to peroxisomal membrane; PDB: 3MK4_A 3AJB_A.

>KOG4444 consensus Peroxisomal assembly protein PEX3 [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-77  Score=565.37  Aligned_cols=346  Identities=30%  Similarity=0.484  Sum_probs=303.0

Q ss_pred             Cc-chhHHHHHhcCCeEEeeeeeeeeeehhHhhHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 017709            1 ML-SLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADLDRQQCEHDELLKAQMQAHYEEVQRIADATTLPHAMHYL   79 (367)
Q Consensus         1 M~-s~~~f~~RhR~k~~i~~~v~G~~y~l~~y~~~~~kl~e~q~~~~~~e~~~ke~lrr~Feq~Q~~c~~t~l~~llp~l   79 (367)
                      |+ +.|+|++|||||++++|+++||||++++|+  ++++++.| ++..+|.++++|+++||||||++|++||+ .++|++
T Consensus         1 ml~~~~~flkRHr~Kvivtg~lvGs~~~~~k~~--~r~~~~~q-er~a~E~~~qarrk~hFEStqrtcd~til-~llp~l   76 (359)
T KOG4444|consen    1 MLQRSWSFLKRHRGKVIVTGVLVGSGIVLVKYV--QRWLREQQ-EREAEEHFIQARRKYHFESTQRTCDQTIL-ELLPVL   76 (359)
T ss_pred             CchhHHHHHHHhcCcEEEEEEEecceEEEEeee--chHHHHHH-HHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHH
Confidence            78 999999999999999999999999999985  45788776 33344788889999999999999999986 699999


Q ss_pred             HHHHHHhcCchHHHHHHHccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 017709           80 SIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGL  159 (367)
Q Consensus        80 ~~~I~~~ldve~it~~Lk~~k~~~~~l~~~~K~eLW~eLKi~sftR~~t~iY~~slL~Ll~riQLNILgr~~Yl~s~~~~  159 (367)
                      +.+|.+++|+|+|+++||++.    .++|++|+||||||||.||||+++.+|++|||.+++|+||||||||.|+|++...
T Consensus        77 ~~~i~eeldvdsi~eqLkqk~----~Ltp~~KleLWeeLKI~sftrl~~~vysvsmLvl~lRvQlNILgr~iYlD~a~~l  152 (359)
T KOG4444|consen   77 RMAINEELDVDSIVEQLKQKN----QLTPKNKLELWEELKIKSFTRLVTVVYSVSMLVLLLRVQLNILGRYIYLDSAIKL  152 (359)
T ss_pred             HHHHHHHcCHHHHHHHHhhCC----CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhh
Confidence            999999999999999999943    3789999999999999999999999999999999999999999999999999875


Q ss_pred             CCCCCCCCCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHHHHHHHHhcCCCccc
Q 017709          160 GSSDLPEDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQ  239 (367)
Q Consensus       160 ~~~~~~~~~~~~~~~~eq~yLs~s~~ll~~G~~~l~~~V~~~V~~vf~~~~lk~~ls~~el~~l~~~i~~~~e~~~~~~~  239 (367)
                      ..      .+.++.+.||+|||.+.||+.+|+..++..++.+|.+|++++++|+.+|+-++++.+++|++.+|..++|++
T Consensus       153 ~~------v~l~~~dlqqqfls~i~~l~tdam~~la~~ik~~~qeVlk~~qlk~slS~~~Leq~~~qi~n~~e~~~dp~h  226 (359)
T KOG4444|consen  153 KM------VQLNCNDLQQQFLSSITHLWTDAMVMLAKKIKKEVQEVLKNEQLKLSLSLWDLEQGWLQITNQIEIEFDPIH  226 (359)
T ss_pred             cc------cccCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccHHHHhhHHHHHHHHHHHHHHHHhcCCCCc
Confidence            42      245678999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc-cccccchhhhhhhccCCCCcccccchhHHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHhhcCC------
Q 017709          240 WVD-FLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGG------  312 (367)
Q Consensus       240 ~~~-~LLP~~~~~~~~~~~~~~~~~~~~~~~~l~~Ll~ET~d~leS~~f~~Vl~~~l~~~f~~l~~~~~~~~~~------  312 (367)
                      |.+ |++|+.+....-.+++.+|.+    .....+|.-||+++|+|++|+.|++.|++++   +++.++..+.+      
T Consensus       227 ~~dkylm~~qnt~ls~~as~~~d~d----vst~f~l~~Etrq~L~st~~stvle~sln~~---~~~~~g~~t~~~e~~~q  299 (359)
T KOG4444|consen  227 WRDKYLMPFQNTPLSFLASGTSDAD----VSTSFHLNTETRQCLESTAFSTVLESSLNES---IMNKVGIKTIAKEKPLQ  299 (359)
T ss_pred             hHhhhcCCCCCCchhhHhccCChHH----HHHHHHHhHHHHHHhcchhHHHHHHHHHhhh---hhccccceeecccCccc
Confidence            999 999985442222234444432    2555566679999999999999999999998   56665544411      


Q ss_pred             --C---CCCCCcccchhhhhhhhcccccCCCCchHHHHHHcCchhHHHHHHHHhcCCCCC
Q 017709          313 --S---LISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLLYANMSDS  367 (367)
Q Consensus       313 --~---~~~~~~LAkllP~v~~~~~~l~~~~~~n~~l~~l~~~~el~~f~A~vYs~~~~~  367 (367)
                        .   .....||||++|+++++.+.+..+|+.|+|+|.+..+++++.|+|+||++|+-+
T Consensus       300 ~gn~~~~~v~~alAk~ip~ie~l~~~~tseps~n~flq~l~~~e~~kdl~anvye~f~~~  359 (359)
T KOG4444|consen  300 EGNQQYQMVVLALAKKIPIIEGLQTTATSEPSGNEFLQTLDSVEPLKDLSANVYENFSVS  359 (359)
T ss_pred             ccchHHHHHHHHHHHhhhhhhccccccccCCCcchHHHHHHhchhhhHHHhhhhhhccCC
Confidence              1   134689999999999999999988878999999999999999999999999853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	367
3mk4_A	334	X-Ray Structure Of Human Pex3 In Complex With A Pex		2e-20
3ajb_A	330	Crystal Structure Of Human Pex3p In Complex With N-		2e-20

>pdb|3MK4|A Chain A, X-Ray Structure Of Human Pex3 In Complex With A Pex19 Derived Peptide Length = 334

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 173/351 (49%), Gaps = 53/351 (15%)
Query: 42  DRQQCEHDELLKAQMQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKE 101
           +R+  E+  + +A+ Q H+E  QR  + T L   +  L   + ++L+   LT  L   K 
Sbjct: 3   EREAAEY--IAQARRQYHFESNQRTCNMTVL-SMLPTLREALMQQLNSESLTALL---KN 56
Query: 102 QPYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGS 161
           +P     S KLE+W+ LKI+SFT+  VA+++  M+ + +RVQ+NI+G ++Y+D A  +G 
Sbjct: 57  RP-----SNKLEIWEDLKIISFTRSTVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGK 110
Query: 162 SDLPEDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLH 221
           +       L   D QQ++L+S+ +L   G+  +I+ ++ A  + L    L+   + + L 
Sbjct: 111 NG---TTILAPPDVQQQYLSSIQHLLGDGLTELITVIKQAVQKVLGSVSLKHSLSLLDLE 167
Query: 222 ETFMQILEVFMSMGSPHQWVD----------FLMPQDIRFYKLVTASG---HDETTLSGA 268
           +   +I  +     S   W++          ++MP D      V A G    D TT+   
Sbjct: 168 QKLKEIRNLVEQHKS-SSWINKDGSKPLLSHYMMP-DEETPLAVQACGLSPRDITTI--- 222
Query: 269 TKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMR---------VQSGGSLIS--- 316
               +L+ ETR +L S ++++V++         L+D M          +Q G S+ S   
Sbjct: 223 ----KLLNETRDMLESPDFSTVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSS 278
Query: 317 -GMPLAKLVPRVVQMSPSLLAE-PSNNRIIQVIRTIPEVELFFTLLYANMS 365
             +PLAK++P V     S+ +E PS+   +Q + T+ +V+ F   +Y   S
Sbjct: 279 VSLPLAKIIPIVNGQIHSVCSETPSH--FVQDLLTMEQVKDFAANVYEAFS 327

>pdb|3AJB|A Chain A, Crystal Structure Of Human Pex3p In Complex With N-Terminal Pex19p Peptide Length = 330

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 167/340 (49%), Gaps = 51/340 (15%)
Query: 53  KAQMQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKL 112
           +A+ Q H+E  QR  + T L   +  L   + ++L+   LT  L   K +P     S KL
Sbjct: 8   QARRQYHFESNQRTCNMTVL-SMLPTLREALMQQLNSESLTALL---KNRP-----SNKL 58
Query: 113 ELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLID 172
           E+W+ LKI+SFT+  VA+++  M+ + +RVQ+NI+G ++Y+D A  +G +       L  
Sbjct: 59  EIWEDLKIISFTRSTVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKNG---TTILAP 114
Query: 173 RDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFM 232
            D QQ++L+S+ +L   G+  +I+ ++ A  + L    L+   + + L +   +I  +  
Sbjct: 115 PDVQQQYLSSIQHLLGDGLTELITVIKQAVQKVLGSVSLKHSLSLLDLEQKLKEIRNLVE 174
Query: 233 SMGSPHQWVD----------FLMPQDIRFYKLVTASG---HDETTLSGATKFDELMVETR 279
              S   W++          ++MP D      V A G    D TT+       +L+ ETR
Sbjct: 175 QHKS-SSWINKDGSKPLLCHYMMP-DEETPLAVQACGLSPRDITTI-------KLLNETR 225
Query: 280 AVLSSAEYTSVVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPR 326
            +L S ++++V++         L+D M          +Q G S+ S     +PLAK++P 
Sbjct: 226 DMLESPDFSTVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPI 285
Query: 327 VVQMSPSLLAE-PSNNRIIQVIRTIPEVELFFTLLYANMS 365
           V     S+ +E PS+   +Q + T+ +V+ F   +Y   S
Sbjct: 286 VNGQIHSVCSETPSH--FVQDLLTMEQVKDFAANVYEAFS 323

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	367
3mk4_A	334	Peroxisomal biogenesis factor 3; membrane, peroxis	4e-55
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>3mk4_A Peroxisomal biogenesis factor 3; membrane, peroxisome, protein transport; 2.42A {Homo sapiens} PDB: 3ajb_A Length = 334

 Score =  183 bits (465), Expect = 4e-55
 Identities = 77/342 (22%), Positives = 149/342 (43%), Gaps = 31/342 (9%)

Query: 43  RQQCEHDELLKAQMQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQ 102
           +++   + + +A+ Q H+E  QR  + T L   +  L   + ++L+   LT  L      
Sbjct: 2   QEREAAEYIAQARRQYHFESNQRTCNMTVLS-MLPTLREALMQQLNSESLTALLKNRP-- 58

Query: 103 PYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSS 162
                 S KLE+W+ LKI+SFT+  VA+++  M+ + +RVQ+NI+G ++Y+D A    + 
Sbjct: 59  ------SNKLEIWEDLKIISFTRSTVAVYSTCMLVVLLRVQLNIIGGYIYLDNAAVGKNG 112

Query: 163 DLPEDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHE 222
                  L   D QQ++L+S+ +L   G+  +I+ ++ A  + L    L+   + + L +
Sbjct: 113 ----TTILAPPDVQQQYLSSIQHLLGDGLTELITVIKQAVQKVLGSVSLKHSLSLLDLEQ 168

Query: 223 TFMQILEVFMSMGSPHQWVDFLMPQDIRFYKLVTASGHDETTLSGAT----KFDELMVET 278
              +I  +     S            +  Y +            G +       +L+ ET
Sbjct: 169 KLKEIRNLVEQHKSSSWINKDGSKPLLSHYMMPDEETPLAVQACGLSPRDITTIKLLNET 228

Query: 279 RAVLSSAEYTSVVDMSFKAAVDALIDEMRV-------------QSGGSLISGMPLAKLVP 325
           R +L S ++++V++         L+D M                        +PLAK++P
Sbjct: 229 RDMLESPDFSTVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIP 288

Query: 326 RVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLLYANMSDS 367
            V     S+ +E   +  +Q + T+ +V+ F   +Y   S  
Sbjct: 289 IVNGQIHSVCSET-PSHFVQDLLTMEQVKDFAANVYEAFSTP 329

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 1e-09
 Identities = 65/376 (17%), Positives = 118/376 (31%), Gaps = 105/376 (27%)

Query: 2   LSLSDFWRR-------HRRKIFITTG------VLGGGYLLYKLYDSQRRIADLDRQQCEH 48
           L L +              KI +TT        L           +     D        
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT-------TTHISLDHHSMTLTP 300

Query: 49  DELLKAQMQAHYEEVQRIADATTLPHAMH-----YLSIRIAEELDLSPLT---------D 94
           DE+    +   Y +         LP  +       LSI IAE +     T         D
Sbjct: 301 DEVK--SLLLKYLDC----RPQDLPREVLTTNPRRLSI-IAESIRDGLATWDNWKHVNCD 353

Query: 95  KLLRGKEQPY-TLSSSEKLELWDRLKILSF-------TKLVVALWAVTMVSLYIRVQVNI 146
           KL    E     L  +E  +++DRL +  F       T L+  +W   ++   + V VN 
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSV--FPPSAHIPTILLSLIWF-DVIKSDVMVVVNK 410

Query: 147 LGR----------------HLYIDTARGLGSSDLPEDADL----IDRDDQQK-------F 179
           L +                 +Y++         L  +  L    +D  +  K        
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKV-----KLENEYALHRSIVDHYNIPKTFDSDDLI 465

Query: 180 LASVD-YLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQ--ILEVFMSMGS 236
              +D Y  ++    +        +   +    R +F    L   F++  I     +  +
Sbjct: 466 PPYLDQYFYSHIGHHL-----KNIEHPERMTLFRMVF----LDFRFLEQKIRHDSTAWNA 516

Query: 237 PHQWVDFLMPQDIRFYK--LVTASGHDETTLSGATKFDELM-VETRAVLSSAEYTSVVDM 293
               ++ L  Q ++FYK  +       E  ++    F  L  +E   + S  +YT ++ +
Sbjct: 517 SGSILNTL--QQLKFYKPYICDNDPKYERLVNAILDF--LPKIEENLICS--KYTDLLRI 570

Query: 294 SFKAAVDALIDEMRVQ 309
           +  A  +A+ +E   Q
Sbjct: 571 ALMAEDEAIFEEAHKQ 586

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 56/343 (16%), Positives = 106/343 (30%), Gaps = 104/343 (30%)

Query: 26  YLLYKLYDSQRRIADLDRQQCEHDELLKAQMQAHYE-EVQRIADATTLPHAMH--YLSIR 82
            L + L   Q  +           + ++  ++ +Y+  +  I      P  M   Y+  R
Sbjct: 66  RLFWTLLSKQEEMVQ---------KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116

Query: 83  IAEELDLSPLTDKLLRGKE--QPYTLSSSEK-LELWDRLKILSFTKLVVAL--------- 130
                      D+L    +    Y +S  +  L+L   L  L   K V+ +         
Sbjct: 117 -----------DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL-IDGVLGSGKT 164

Query: 131 WAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPED-----ADLIDRDDQQKFLASVDY 185
           W    V L  +VQ  +  +  +++    L + + PE        L+ + D   + +  D+
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLN----LKNCNSPETVLEMLQKLLYQIDP-NWTSRSDH 219

Query: 186 LANYGMQAMISNVQAAADEALKGKQ-------LRDIFNTVVLHETFMQILEVFMSMGSPH 238
            +N  ++  I ++QA     LK K        L ++ N         +    F       
Sbjct: 220 SSNIKLR--IHSIQAELRRLLKSKPYENCLLVLLNVQNA--------KAWNAF------- 262

Query: 239 QWVDFLMPQDIRFYKLVTASGHDETT-LSGATKFDELMVETRAVLSSAEYTSVVDMSFKA 297
                    ++    L+T      T  LS AT     +      L+  E  S++      
Sbjct: 263 ---------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL------ 307

Query: 298 AVDALIDEMRVQSGGSLISGMPLAKLVPRVVQMSP---SLLAE 337
                                    L   V+  +P   S++AE
Sbjct: 308 ---------------LKYLDCRPQDLPREVLTTNPRRLSIIAE 335

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	367
3mk4_A	334	Peroxisomal biogenesis factor 3; membrane, peroxis	100.0

>3mk4_A Peroxisomal biogenesis factor 3; membrane, peroxisome, protein transport; 2.42A {Homo sapiens} PDB: 3ajb_A

Probab=100.00  E-value=1.6e-83  Score=626.61  Aligned_cols=302  Identities=26%  Similarity=0.397  Sum_probs=260.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHccCCCCCCCCchhHHHHHHHHHHHHHHH
Q 017709           46 CEHDELLKAQMQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSFTK  125 (367)
Q Consensus        46 ~~~e~~~ke~lrr~Feq~Q~~c~~t~l~~llp~l~~~I~~~ldve~it~~Lk~~k~~~~~l~~~~K~eLW~eLKi~sftR  125 (367)
                      ...|.++|+|+++||||||+||++||+ +++|+++++|++++|+|+||++||++        |++|+||||||||+||||
T Consensus         5 ~~~e~~~~ar~~~hFe~tQ~~c~~Tvl-~llp~l~~~i~~~ld~e~lt~~Lk~~--------~~~K~eLW~eLKi~s~TR   75 (334)
T 3mk4_A            5 EAAEYIAQARRQYHFESNQRTCNMTVL-SMLPTLREALMQQLNSESLTALLKNR--------PSNKLEIWEDLKIISFTR   75 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHTTC--------CSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHhC--------chHHHHHHHHHHHHHHHH
Confidence            355899999999999999999999886 99999999999999999999999985        679999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 017709          126 LVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEA  205 (367)
Q Consensus       126 ~~t~iY~~slL~Ll~riQLNILgr~~Yl~s~~~~~~~~~~~~~~~~~~~~eq~yLs~s~~ll~~G~~~l~~~V~~~V~~v  205 (367)
                      ++|++|++|||++++|+||||||||.|++++....++    ....+|.++||+||++||||+|+||.+++++|+++|+++
T Consensus        76 ~~t~iY~~slL~ll~RvQLNILGr~~Yl~sa~~~~~~----~~~~~~~~~qq~yLs~s~~ll~~G~~~l~~~Ve~~V~~v  151 (334)
T 3mk4_A           76 STVAVYSTCMLVVLLRVQLNIIGGYIYLDNAAVGKNG----TTILAPPDVQQQYLSSIQHLLGDGLTELITVIKQAVQKV  151 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC----------CCCSSCHHHHHHHHGGGHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC----CCCCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999997432211    123578999999999999999999999999999999999


Q ss_pred             hcCCCCCcccCHHHHHHHHHHHHHHHhcC---------CCcccccccccccchhhhhhhccCCCCcccccchhHHHHHHH
Q 017709          206 LKGKQLRDIFNTVVLHETFMQILEVFMSM---------GSPHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMV  276 (367)
Q Consensus       206 f~~~~lk~~ls~~el~~l~~~i~~~~e~~---------~~~~~~~~~LLP~~~~~~~~~~~~~~~~~~~~~~~~l~~Ll~  276 (367)
                      |++++||+.+|+++|++++++||+.+++.         ++.+.|++||||++.... ++.+++    ...+++.|++|||
T Consensus       152 ~~~~~lk~~ls~~~l~~l~~~Ir~~ve~~~~~~~~~~~~~~~~~~~yLlP~~~~~~-~~q~~~----~~~~~~~l~~Ll~  226 (334)
T 3mk4_A          152 LGSVSLKHSLSLLDLEQKLKEIRNLVEQHKSSSWINKDGSKPLLSHYMMPDEETPL-AVQACG----LSPRDITTIKLLN  226 (334)
T ss_dssp             HTTCCSSCEEEHHHHHHHHHHHHHHHHTC-------------CGGGGTSCCCCC-------------CCHHHHHHHHHHH
T ss_pred             HCCCCcccccCHHHHHHHHHHHHHHHhccccccccccCCcccchHHhcCCCchhHH-HHhccC----CCCccHHHHHHHH
Confidence            99999999999999999999999999873         234789999999975432 222111    1234578999999


Q ss_pred             HHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHhhcCCC-------------CCCCCcccchhhhhhhhcccccCCCCchHH
Q 017709          277 ETRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGGS-------------LISGMPLAKLVPRVVQMSPSLLAEPSNNRI  343 (367)
Q Consensus       277 ET~d~leS~~f~~Vl~~~l~~~f~~l~~~~~~~~~~~-------------~~~~~~LAkllP~v~~~~~~l~~~~~~n~~  343 (367)
                      ||+|+||||+|++|++.|+|++|+.++|++++.|++.             +..++||||+||+|+||+|.++ +|.||+|
T Consensus       227 ET~d~leS~~f~~Vl~~~l~~~F~~l~d~~~~~f~~~~~~~~~~~~~~~~~~v~~~LAklLpvv~~q~~~i~-~~~pN~~  305 (334)
T 3mk4_A          227 ETRDMLESPDFSTVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIVNGQIHSVC-SETPSHF  305 (334)
T ss_dssp             HHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCC-----------------CEEEHHHHHHHHHTTHHHHT-CCSTTSH
T ss_pred             HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCcccccccccchhhhHHHHHHHHHhhhhhcc-cCCchHH
Confidence            9999999999999999999999999999999877321             1368999999999999999775 5689999


Q ss_pred             HHHHcCchhHHHHHHHHhcCCCC
Q 017709          344 IQVIRTIPEVELFFTLLYANMSD  366 (367)
Q Consensus       344 l~~l~~~~el~~f~A~vYs~~~~  366 (367)
                      +|.|.++++|++|||+||++|+.
T Consensus       306 lq~l~~~~el~~f~A~VY~sf~~  328 (334)
T 3mk4_A          306 VQDLLTMEQVKDFAANVYEAFST  328 (334)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhhHHHHHHHHHHHHHcCC
Confidence            99999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00