Citrus Sinensis ID: 017724

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------
Protein Sequence
MLQCPSINASSASSSIPGAAGNSTDGSPSSSVQQSPTFNLTQAYLSIQTTSYHEILSRIRILDPHYRNHDQNQVEQQVEEINEDKDPDQLLLSQVLRPNRESVKEALRLVKVNSLSDLFSTSFDHSEKTTNLCLQLLKSLFCIRTLYAPVCELLDNFPLDHHSVTQSQCDNAFEVFLQFDSLHNPFHSPDSRKFHEMHRCFSDLKQKLDKNLQKSRSRVCFLRYATAGSSVCIIGTAVGVTIATVGVATHAIFAIFAGPLCTACFPCALTKKELANAAQLDAARKGAYVLNKCLDTIDRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEHICLCFRPSFGQGLCF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHccccccccccccHHHHHccccccccHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccEcccHHHHHEccccHHHHHHHHEEEcccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccHHHHHHHHHHHHHEEEEEcccccccccc
Coil and Loop (DISEMBL)
mlqcpsinassasssipgaagnstdgspsssvqqsptfnLTQAYLSIQTTSYHEILSRIRildphyrnhdqnQVEQQVEEinedkdpdqlllsqvlrpnrESVKEALRLVKVNSLSDlfstsfdhsekTTNLCLQLLKSLFCIRTLYAPvcelldnfpldhhsvtqsqcDNAFEVFLQfdslhnpfhspdsrkfhemhRCFSDLKQKLDKNLQKSRSRVCFLRYATAGSSVCIIGTAVGVTIATVGVATHAIFAIfagplctacfpcalTKKELANAAQLDAARKGAYVLNKCLDTIDRLVARLCTAIEGDKQLVRLglgggkekHSIQEVVKQLRKNQPNFASLLKDLEEHIclcfrpsfgqglcf
Flexible Loop (DISEMBL)
MLQCPSINASSASSSIPGAAGNSTDGSPSSSVQQSPTFNLTQAYLSIQTTSYHEILSRIRILDPHYRNHDQNQVEQQVEEINEDKDPDQLLLSQVLRPNRESVKEALRLVKVNSLSDLFSTSFDHSEKTTNLCLQLLKSLFCIRTLYAPVCELLDNFPLDHHSVTQSQCDNAFEVFLQFDSLHNPFHSPDSRKFHEMHRCFSDLKQKLDKNLQKSRSRVCFLRYATAGSSVCIIGTAVGVTIATVGVATHAIFAIFAGPLCTACFPCALTKKELANAAQLDAARKGAYVLNKCLDTIDRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEHICLCFrpsfgqglcf
Low Complexity Region (SEG)
MLQCpsinassasssipgaagnsTDGSPSSSVQQSPTFNLTQAYLSIQTTSYHEILSRIRILDPHYRNHDqnqveqqveeineDKDPDQLLLSQVLRPNRESVKEALRLVKVNSLSDLFSTSFDHSEKTTNLCLQLLKSLFCIRTLYAPVCELLDNFPLDHHSVTQSQCDNAFEVFLQFDSLHNPFHSPDSRKFHEMHRCFSdlkqkldknlqkSRSRVCFLRYATAGSSVCiigtavgvtiatvgvathaiFAIFAGPLCTACFPCALTKKELANAAQLDAARKGAYVLNKCLDTIDRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEHICLCFRPSFGQGLCF
Disordered region (IsUnstruct)
*************************************FNLTQAYLSIQTTSYHEILSRIRILDPHY***************************************ALRLVKVNSLSDLFSTSFDHSEKTTNLCLQLLKSLFCIRTLYAPVCELLDNFPLDHHSVTQSQCDNAFEVFLQFDSLHNPF**********MHRCFSDL***********RSRVCFLRYATAGSSVCIIGTAVGVTIATVGVATHAIFAIFAGPLCTACFPCALTKKELANAAQLDAARKGAYVLNKCLDTIDRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEHICLCFRPSFGQGL**
Disordered Region (DISOPRED)
******************************************AYLSIQTTSYHEILSRIRIL***************************LLLSQVLRPNRESVKEALRLVKVNSLSDLFSTSFDHSEKTTNLCLQLLKSLFCIRTLYAPVCELLDNFPL*******SQCDNAFEVFLQFDSLHNPFHSPDSRKFHEMHRCFS******************FLRYATAGSSVCIIGTAVGVTIATVGVATHAIFAIFAGPLCTACFPCALT**********DAARKGAYVLNKCLDTIDRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRK***NFASLLKDLEEHICLCFRPSFGQGLCF
Disordered Region (DISEMBL)
***********************************PTFNLTQAYLSIQTTSYHEILSRIRILDPHYRNHDQNQVEQQVEEINEDKDPDQLLLSQVLRPNRESVKEALRLVKVNSLSDLFSTSFDHSEKTTNLCLQLLKSLFCIRTLYAPVCELLDNFPLDHHSVTQSQCDNAFEVFLQFDSLHNPFHSPDSRKFHEMHRCFSDLKQKLDKNLQKSRSRVCFLRYATAGSSVCIIGTAVGVTIATVGVATHAIFAIFAGPLCTACFPCALTKKELANAAQLDAARKGAYVLNKCLDTIDRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEHICLCFRPSFGQGLCF
Disordered Region (DISPRO)
************************************TFNLTQAYLSIQTTSYHEILSRIRILDPH********************DPDQLLLSQVLRPNRESVKEALRLVKVNSLSDLFSTSFDHSEKTTNLCLQLLKSLFCIRTLYAPVCELLDNFPLDHHSVTQSQCDNAFEVFLQFDSLHNPFHSPDSRKFHEMHRCFSDLKQKLDKNLQKSRSRVCFLRYATAGSSVCIIGTAVGVTIATVGVATHAIFAIFAGPLCTACFPCALTKKELANAAQLDAARKGAYVLNKCLDTIDRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEHICLCFRPSFGQGLCF
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLQCPSINASSASSSIPGAAGNSTDGSPSSSVQQSPTFNLTQAYLSIQTTSYHEILSRIRILDPHYRNHDQNQVEQQVEEINEDKDPDQLLLSQVLRPNRESVKEALRLVKVNSLSDLFSTSFDHSEKTTNLCLQLLKSLFCIRTLYAPVCELLDNFPLDHHSVTQSQCDNAFEVFLQFDSLHNPFHSPDSRKFHEMHRCFSDLKQKLDKNLQKSRSRVCFLRYATAGSSVCIIGTAVGVTIATVGVATHAIFAIFAGPLCTACFPCALTKKELANAAQLDAARKGAYVLNKCLDTIDRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEHICLCFRPSFGQGLCF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	367	2.2.26 [Sep-21-2011]
Q9LT84	382	UPF0496 protein At3g19330	yes	no	0.940	0.903	0.448	7e-74
Q9LJK4	360	UPF0496 protein At3g19250	no	no	0.885	0.902	0.430	4e-65
A2XCJ1	378	UPF0496 protein 3 OS=Oryz	N/A	no	0.839	0.814	0.275	2e-16
Q9SMU4	416	UPF0496 protein At3g49070	no	no	0.697	0.615	0.295	3e-16
Q10RR9	378	UPF0496 protein 3 OS=Oryz	no	no	0.839	0.814	0.275	4e-16
Q6DYE5	390	UPF0496 protein At1g20180	no	no	0.675	0.635	0.258	5e-13
A2YH25	408	Putative UPF0496 protein	N/A	no	0.220	0.198	0.358	7e-10
Q5Z8N6	408	Putative UPF0496 protein	no	no	0.220	0.198	0.358	7e-10

>sp|Q9LT84|U496M_ARATH UPF0496 protein At3g19330 OS=Arabidopsis thaliana GN=At3g19330 PE=2 SV=2

 Score =  278 bits (710), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 166/370 (44%), Positives = 229/370 (61%), Gaps = 25/370 (6%)

Query: 1   MLQCPSINASSASSSI-------PGAAGNSTDGSPSSSVQQSPTFNLTQAYL-SIQTTSY 52
           M  C S N +S  +S+       P         S + +   SPTFNL++    + QT SY
Sbjct: 1   MRNCLSFNPASPEASLGDDPLPHPSLESGVASTSRNDASISSPTFNLSRELAHAFQTPSY 60

Query: 53  HEILSRIRILDPHYRNHDQNQVEQQVEEINEDKDPD-QLLLSQVLRPNRESVKEALRLVK 111
           H++ SR+ ++       D  Q+  ++ +      PD +LLLSQVL+PN+E V+EA+R VK
Sbjct: 61  HDVRSRVHVVV------DLTQIHHRLIQ------PDIELLLSQVLQPNKECVQEAIRHVK 108

Query: 112 VNSLSDLFSTSFDHSEKTTNLCLQLLKSLFCIRT-LYAPVCELLDNFPLDH-HSVTQSQC 169
             +L++L ST F HSE  T LCL L +++   R  LY P+ +L + FP D   ++ +S C
Sbjct: 109 QTTLTNLVSTYFQHSEDATRLCLNLYQNVHSARHHLYTPLLDLFNIFPGDSLPAIDESLC 168

Query: 170 DNAFEVFLQFDSLHNPFHSPDSRKFHEMHRCFSDLKQKLDKNLQKSRSRVCFLRYATAGS 229
           D AF+VFL+ D+  NPF SP+S  F +   CFS LK  LD+ L+KSRSRV  + +ATAGS
Sbjct: 169 DLAFDVFLKLDTFENPFSSPESYSFRDTQLCFSQLKHNLDRRLRKSRSRVRLIHHATAGS 228

Query: 230 SVCIIGTAVGVTIATVGVATHA--IFAIFAGPLCTACFPCALTKKELANAAQLDAARKGA 287
           S+C++   V V  + V +A+HA  I  + AGPLC+   P +  +KEL N  QL+AA KG 
Sbjct: 229 SLCLVAAVVAVAASAVVIASHALPILLVVAGPLCSPYLPHSFKRKELTNICQLNAASKGT 288

Query: 288 YVLNKCLDTIDRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLK 347
           +VLNK LDTIDRLV+RL T IE DK L+RLGL  G++ HSIQE++K LRK+       LK
Sbjct: 289 FVLNKDLDTIDRLVSRLHTGIEYDKFLIRLGLERGRDVHSIQEILKLLRKSHLPLTHQLK 348

Query: 348 DLEEHICLCF 357
           DLE+HICL F
Sbjct: 349 DLEDHICLWF 358

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJK4|U496L_ARATH UPF0496 protein At3g19250 OS=Arabidopsis thaliana GN=At3g19250 PE=2 SV=1

 Score =  248 bits (634), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 151/351 (43%), Positives = 208/351 (59%), Gaps = 26/351 (7%)

Query: 14  SSIPGAAGNSTDGSPSSSVQQSPTFNLTQAYL-SIQTTSYHEILSRIRILDPHYRNHDQN 72
           +S  G+ G+     PS     + TFNL+     + QT SYH+I SR+ ++DP        
Sbjct: 10  ASPEGSLGDDHLPHPSPEGSVASTFNLSHELAHAFQTPSYHDIRSRLLVIDP-------- 61

Query: 73  QVEQQVEEINEDKDPDQLLLSQVLRPNRESVKEALRL--VKVNSLSDLFSTSFDHSEKTT 130
             ++ +E          L LSQ LRPN ESV+EAL L   K  +L++L ST F HSE  T
Sbjct: 62  -TQENLE----------LFLSQELRPNNESVQEALSLRHAKQTTLTNLVSTYFQHSEDAT 110

Query: 131 NLCLQLLKSLFCIR-TLYAPVCELLDNFPLDHHS-VTQSQCDNAFEVFLQFDSLHNPFHS 188
             CL L +++   R  LY P+ +L + FP D HS + +S C+ AF+VFL+ D+  NPF S
Sbjct: 111 RFCLNLYQNVHSARCHLYTPLLDLFNIFPRDSHSAIDESFCNLAFDVFLKLDTFENPFAS 170

Query: 189 PDSRKFHEMHRCFSDLKQKLDKNLQKSRSRVCFLRYATAGSSVCIIGTAVGVTIATVGVA 248
           P+S  F +   CF  L  KLD  ++KS+SRV  L +ATAGS++C++   V V  +   +A
Sbjct: 171 PESHSFQDTQLCFYQLADKLDTRIRKSKSRVRLLHHATAGSALCLVTAVVVVAASAAFIA 230

Query: 249 THAIFAIF--AGPLCTACFPCALTKKELANAAQLDAARKGAYVLNKCLDTIDRLVARLCT 306
            HA+  I   AGPLCT   P +  KKEL+N  QL+ A KG + LNK LDTIDRLV+RL T
Sbjct: 231 YHALPTILVVAGPLCTPYLPHSFKKKELSNIFQLNVAAKGTFALNKDLDTIDRLVSRLHT 290

Query: 307 AIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEHICLCF 357
            ++ DK L+RLGL  G++ ++I E VKQLRK+  N    L+ L +HIC  F
Sbjct: 291 GVKNDKLLIRLGLERGRDVYTIPEFVKQLRKSHVNHTHQLEVLVDHICRWF 341

Arabidopsis thaliana (taxid: 3702)

>sp|A2XCJ1|U496C_ORYSI UPF0496 protein 3 OS=Oryza sativa subsp. indica GN=OsI_009784 PE=3 SV=2

 Score = 87.4 bits (215), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 154/360 (42%), Gaps = 52/360 (14%)

Query: 28  PSSSVQQSPTFNLTQAYLS-IQTTSYHEILSRI--------RILDPHYRNHDQNQVEQQV 78
           P   V  S +F+  + Y S  +T SY++  +R+          L P +         +++
Sbjct: 22  PKKVVAPSSSFDFREEYTSAFRTESYNDFWARVLDITLAHGAALVPRHGGGGGCAASKRL 81

Query: 79  EEINEDKDPDQLLLSQVLRPNRESVKEALRLVKVNSLS----DLFSTSFDHSEKTTNLCL 134
                     +L    +L P++ +V  AL   + + L      L +  +  +   + LC 
Sbjct: 82  PSY-------RLFAEHLLEPDQRAVAAALASPRGSRLRPDVRGLLAAYYAETANASFLCS 134

Query: 135 QLLKSLFCIRTLYAPVCELLDNFPLDHHSVTQSQCDNAFEVFLQFDSLHNPFHS--PDSR 192
            LLK +  IR  Y P+   L     D      +    A         L  PF +      
Sbjct: 135 HLLKDIEHIRLRYRPLKHTLRKLASDVGVSGLADVSAA---------LGQPFTALAASQG 185

Query: 193 KFHEMHRCFSDLKQKLDKNLQKSRSR---VCFLRYATAGSSVCIIGTAVGVTIATVGVAT 249
           +  E+     DL + LD   +K+R R   V  LR A + S V  +     V  A +GV  
Sbjct: 186 RLREVQAGSGDLLRGLDAGRKKARHRIRSVARLRRALSVSFVTAVAVVA-VVGACIGVHI 244

Query: 250 HAIFAIFAGPLCTACFPCALTKKELANAA------QLDAARKGAYVLNKCLDTIDRLVAR 303
            A FA F  P+ +   P  L ++  +  A      QL+AA KG Y+LN+ ++TI RLVAR
Sbjct: 245 LAAFAAF--PMMS---PAWLGERFFSGRAARRALVQLEAAAKGTYILNRDMETISRLVAR 299

Query: 304 LCTAIEGDKQLVRL------GLGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEHICLCF 357
           +    E    L+RL        G G +   +QEV++QL KN+ +F   L +LEEH+ LCF
Sbjct: 300 VRDEGEHMVALLRLCVEHRPAAGAGGKGRLVQEVLRQLSKNEESFRQQLDELEEHLFLCF 359

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9SMU4|U496N_ARATH UPF0496 protein At3g49070 OS=Arabidopsis thaliana GN=At3g49070 PE=2 SV=1

 Score = 86.7 bits (213), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 131/274 (47%), Gaps = 18/274 (6%)

Query: 89  QLLLSQVLRPNRESVKEALRLVKVNSLS-DLFSTSFDHSEKTTNLCLQLLKSLFCIRTLY 147
           +L    +L P+  ++   L + +V   +  L S  F  +     LC QLLK++  +R+ Y
Sbjct: 123 RLFAHNLLDPDLNTITRILDVSRVGRHTRTLLSDYFLETANAFLLCTQLLKNIHHLRSKY 182

Query: 148 APVCELLDNFPLDHHSVTQSQCDNAFEVFLQFDSLHNPFHSPDSRKFHEMHRCFSDLKQK 207
                L   F  ++H+ + +  D   E+   FD    PF S  SR       C   LK +
Sbjct: 183 E---SLKPKFHSENHN-SLALIDQFTEISKWFD----PFISSGSRIQLIRSGCLYLLK-R 233

Query: 208 LDKNLQKSRSRVCFLRYATAGSSVCIIGTAVGVTIATVGVATHAIFAIFAGP--LCTACF 265
           L+    K+R+++  +   T  S +         T   V +A+HA     A P  L +   
Sbjct: 234 LESRRDKTRAKLKLINGLTHSSGLL---VLALTTTLIVTIASHAFALFLAAPTLLASQFK 290

Query: 266 PCALTKKELANAAQLDAARKGAYVLNKCLDTIDRLVARLCTAIEGDKQLVR--LGLGGGK 323
           P  L  K    AA+LD A KG Y+L++ LDTI RLV R+   +   + +    +G G G+
Sbjct: 291 PAGLRNKLTKTAARLDVAAKGTYILSRDLDTISRLVTRINDEVNHVRAMAEFWVGRGSGR 350

Query: 324 EKHSIQEVVKQLRKNQPNFASLLKDLEEHICLCF 357
            + S +EV ++L++ + +F+  L +LEEHI LCF
Sbjct: 351 VRGS-EEVARELKRCEESFSEELDELEEHIYLCF 383

Arabidopsis thaliana (taxid: 3702)

>sp|Q10RR9|U496C_ORYSJ UPF0496 protein 3 OS=Oryza sativa subsp. japonica GN=Os03g0148000 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 153/360 (42%), Gaps = 52/360 (14%)

Query: 28  PSSSVQQSPTFNLTQAYLS-IQTTSYHEILSRI--------RILDPHYRNHDQNQVEQQV 78
           P   V  S +F+  + Y S  +T SY++  +R+          L P +         +++
Sbjct: 22  PKKVVAPSSSFDFREEYTSAFRTESYNDFWARVLDITLAHGAALVPRHGGGGGCAASKRL 81

Query: 79  EEINEDKDPDQLLLSQVLRPNRESVKEALRLVKVNSLS----DLFSTSFDHSEKTTNLCL 134
                     +L    +L P++ +V  AL   + + L      L +  +  +   + LC 
Sbjct: 82  PSY-------RLFAEHLLEPDQRAVAAALASPRGSRLRPDVRGLLAAYYAETANASFLCS 134

Query: 135 QLLKSLFCIRTLYAPVCELLDNFPLDHHSVTQSQCDNAFEVFLQFDSLHNPFHS--PDSR 192
            LLK +  IR  Y P+   L     D      +    A         L  PF +      
Sbjct: 135 HLLKDIEHIRLRYRPLKHTLRKLASDVGVSGLADVSAA---------LGQPFTALAASQG 185

Query: 193 KFHEMHRCFSDLKQKLDKNLQKSRSR---VCFLRYATAGSSVCIIGTAVGVTIATVGVAT 249
           +  E+     DL + LD   +K+R R   V  LR A + S V  +     V  A +GV  
Sbjct: 186 RLREVQAGSGDLLRGLDAGRKKARHRIRSVARLRRALSVSFVTAVAVVA-VVGACIGVHI 244

Query: 250 HAIFAIFAGPLCTACFPCALTKKELANAA------QLDAARKGAYVLNKCLDTIDRLVAR 303
            A FA F  P+ +   P  L ++  +  A      QL+AA KG Y+LN+ ++TI RLVAR
Sbjct: 245 LAAFAAF--PMMS---PAWLGERFFSGRAARRALVQLEAAAKGTYILNRDMETISRLVAR 299

Query: 304 LCTAIEGDKQLVRL------GLGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEHICLCF 357
           +    E    L RL        G G +   +QEV++QL KN+ +F   L +LEEH+ LCF
Sbjct: 300 VRDEGEHMVALRRLCVEHRPAAGAGGKGRLVQEVLRQLSKNEESFRQQLDELEEHLFLCF 359

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6DYE5|U496K_ARATH UPF0496 protein At1g20180 OS=Arabidopsis thaliana GN=At1g20180 PE=2 SV=2

 Score = 75.9 bits (185), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 123/271 (45%), Gaps = 23/271 (8%)

Query: 109 LVKVNSLSDLFSTSFDHSEKTTNLCLQLLKSLFCIRTLYAPVCELLD------NFPLDHH 162
           L++ +SL +L  T FD S +  ++C  LL+ L  I+  +  +  ++       N      
Sbjct: 102 LMQDSSLDNLIVTFFDLSSEACDVCETLLQCLQQIKINHNKIKRVMKIGKRVCNGAKTLE 161

Query: 163 SVTQSQCDNAFEVFLQFDSLHNPF-HSPDSRKFHEMHRCFSDLKQKLDKNLQKSRSRVCF 221
              +  C   F+   +F +L NP     +  +F  +H   SDL  KL    ++ R ++ F
Sbjct: 162 CSPEMLCALIFQELSRFAALKNPLCRIVNEAQFRIVHDANSDLLTKLTSKKRRIRRKIRF 221

Query: 222 LRYATAGSSVCIIGTAVGVTIATVGVATHAIFAIFAGP-LCTACFPCALTKKELAN---- 276
            ++        ++ T   + I  + +A H+I  +FA P L   C  C L KK+       
Sbjct: 222 FKFCKKLGGYSLVITHSAIVITLLIIALHSILGVFAAPALLGLCSFCLLRKKKAKGRMHK 281

Query: 277 ----------AAQLDAARKGAYVLNKCLDTIDRLVARLCTAIEGDKQLVRLGLGGGKEKH 326
                       Q+D A KG ++L   LDT+ RL  RLC  IE  K +  +     ++  
Sbjct: 282 SNKDTTLEKLGTQIDIAAKGMFILINDLDTLSRLAGRLCDEIEHRKTVAAM-CAKSRKIE 340

Query: 327 SIQEVVKQLRKNQPNFASLLKDLEEHICLCF 357
            ++E +++   ++  F+  L++LEEH+ LCF
Sbjct: 341 VLKEALREFNGHEEKFSDQLQELEEHLYLCF 371

Arabidopsis thaliana (taxid: 3702)

>sp|A2YH25|U496B_ORYSI Putative UPF0496 protein 2 OS=Oryza sativa subsp. indica GN=OsI_023618 PE=3 SV=2

 Score = 65.5 bits (158), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 50/81 (61%)

Query: 277 AAQLDAARKGAYVLNKCLDTIDRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLR 336
            A LDAA +GAY++ + LDT+ R+V R    +E  + + R+ + G  E+  +QEV ++  
Sbjct: 291 GATLDAAARGAYIVGRDLDTVSRMVRRAHDELEHGRDVARIAMRGHGERPLLQEVAREEE 350

Query: 337 KNQPNFASLLKDLEEHICLCF 357
           + + +  + L +LEEH+CLC 
Sbjct: 351 ECEEDLRAQLAELEEHVCLCL 371

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q5Z8N6|U496B_ORYSJ Putative UPF0496 protein 2 OS=Oryza sativa subsp. japonica GN=Os06g0718300 PE=3 SV=1

 Score = 65.5 bits (158), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 50/81 (61%)

Query: 277 AAQLDAARKGAYVLNKCLDTIDRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLR 336
            A LDAA +GAY++ + LDT+ R+V R    +E  + + R+ + G  E+  +QEV ++  
Sbjct: 291 GATLDAAARGAYIVGRDLDTVSRMVRRAHDELEHGRDVARIAMRGHGERPLLQEVAREEE 350

Query: 337 KNQPNFASLLKDLEEHICLCF 357
           + + +  + L +LEEH+CLC 
Sbjct: 351 ECEEDLRAQLAELEEHVCLCL 371

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	367
225457729	376	PREDICTED: UPF0496 protein At3g19330 [Vi	0.956	0.933	0.530	5e-92
147797970	996	hypothetical protein VITISV_028729 [Viti	0.899	0.331	0.542	1e-91
255543517	407	conserved hypothetical protein [Ricinus	0.945	0.852	0.479	9e-86
255543515	389	conserved hypothetical protein [Ricinus	0.956	0.902	0.436	7e-75
42565016	382	uncharacterized protein [Arabidopsis tha	0.940	0.903	0.448	4e-72
11994455	377	unnamed protein product [Arabidopsis tha	0.940	0.915	0.448	6e-72
297830582	349	hypothetical protein ARALYDRAFT_479449 [	0.855	0.899	0.428	3e-67
42572487	349	uncharacterized protein [Arabidopsis tha	0.858	0.902	0.418	2e-63
145338705	360	uncharacterized protein [Arabidopsis tha	0.885	0.902	0.430	2e-63
116831218	361	unknown [Arabidopsis thaliana]	0.885	0.900	0.430	3e-63

>gi|225457729|ref|XP_002274305.1| PREDICTED: UPF0496 protein At3g19330 [Vitis vinifera] gi|297745643|emb|CBI40808.3| unnamed protein product [Vitis vinifera]

 Score =  344 bits (882), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 191/360 (53%), Positives = 248/360 (68%), Gaps = 9/360 (2%)

Query: 1   MLQCPSINASSASSSIPGAAGNSTDGSPSSSVQQSPTFNLTQAY-LSIQTTSYHEILSRI 59
           MLQC S+ +S+++S+      NS + +P S  Q SPT NLT+ Y L++QT SY+EI S+I
Sbjct: 1   MLQCLSLKSSASTSTTTVPVENSREDTPRSISQTSPTVNLTREYTLAVQTNSYNEIWSKI 60

Query: 60  RILDPHYRNHDQ--NQVEQQVEEINEDKDPDQLLLSQVLRPNRESVKEALRLVKVNSLSD 117
                H R+ D   N    Q  +   ++D  QL L+ VLRP+RE V++ALR  + N+L+ 
Sbjct: 61  -----HVRHQDDYTNTDPDQDTDGEREEDVQQLRLAHVLRPDRECVQDALRHARSNTLTR 115

Query: 118 LFSTSFDHSEKTTNLCLQLLKSLFCIRTLYAPVCELLDNFPLDHHSVTQSQCDNAFEVFL 177
           L S  FDHSE T+ LCL L +S+    +LY+P+ +LLD  PLD  S+TQSQC+ AF+VFL
Sbjct: 116 LVSDYFDHSENTSQLCLLLHRSVHHAHSLYSPLHDLLDILPLDSDSLTQSQCNQAFDVFL 175

Query: 178 QFDSLHNPFHSPDSRKFHEMHRCFSDLKQKLDKNLQKSRSRVCFLRYATAGSSVCIIGTA 237
           QFDSL NPF  PDS  F +M RCFS LK++LD +++KSRS++  +  ATAGS+ C IGTA
Sbjct: 176 QFDSLDNPFPCPDSHNFRDMRRCFSQLKEQLDGHIRKSRSKIRLICRATAGSAFCFIGTA 235

Query: 238 VGVTIATVGVATHAIFAIFAGPLCTACFPCALTKKELANAAQLDAARKGAYVLNKCLDTI 297
           VGV I+ V +ATH + A+ A PL T   P  L+KKELA+ AQLDAA +G YVL   L TI
Sbjct: 236 VGVAISAVAIATHTLVALIA-PLSTVFLPPRLSKKELAHGAQLDAAARGTYVLCHDLGTI 294

Query: 298 DRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEHICLCF 357
           D LVA L TA+EGDK+L+RLGL GG++KH+IQEV K L KN   F   LKDLEEHICLCF
Sbjct: 295 DSLVAWLHTAVEGDKRLIRLGLEGGRDKHTIQEVAKHLCKNHLYFLHQLKDLEEHICLCF 354

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147797970|emb|CAN67266.1| hypothetical protein VITISV_028729 [Vitis vinifera]

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 184/339 (54%), Positives = 235/339 (69%), Gaps = 9/339 (2%)

Query: 22  NSTDGSPSSSVQQSPTFNLTQAY-LSIQTTSYHEILSRIRILDPHYRNHDQ--NQVEQQV 78
           NS + +P S  Q SPT NLT+ Y L++QT SY+EI S+I     H R+ D   N    Q 
Sbjct: 642 NSREDTPRSISQTSPTVNLTREYTLAVQTNSYNEIWSKI-----HVRHQDDYTNTDPDQD 696

Query: 79  EEINEDKDPDQLLLSQVLRPNRESVKEALRLVKVNSLSDLFSTSFDHSEKTTNLCLQLLK 138
            +   ++D  QL L+ VLRP+RE V++ALR  + N+L+ L S  FDHSE T+ LCL L +
Sbjct: 697 TDGEREEDVQQLRLAHVLRPDRECVQDALRHARSNTLTRLVSDYFDHSENTSQLCLLLHR 756

Query: 139 SLFCIRTLYAPVCELLDNFPLDHHSVTQSQCDNAFEVFLQFDSLHNPFHSPDSRKFHEMH 198
           S+    +LY+P+ +LLD  PLD  S+TQSQCB AF+VFLQFDSL NPF  PDS  F +M 
Sbjct: 757 SVHHAHSLYSPLHDLLDILPLDSDSLTQSQCBQAFDVFLQFDSLDNPFPCPDSHNFRDMR 816

Query: 199 RCFSDLKQKLDKNLQKSRSRVCFLRYATAGSSVCIIGTAVGVTIATVGVATHAIFAIFAG 258
           RCFS LK++LD +++KSRS++  +  ATAGS+ C IGTAVGV I+ V +ATH + A+ A 
Sbjct: 817 RCFSQLKEQLDGHIRKSRSKIRLICRATAGSAFCFIGTAVGVAISAVAIATHTLVALIA- 875

Query: 259 PLCTACFPCALTKKELANAAQLDAARKGAYVLNKCLDTIDRLVARLCTAIEGDKQLVRLG 318
           PL T   P  L+KKELA+ AQLDAA +G YVL   L TID LVA L TA+EGDK+L+RLG
Sbjct: 876 PLSTVFLPPRLSKKELAHGAQLDAAARGTYVLCHDLGTIDSLVAWLHTAVEGDKRLIRLG 935

Query: 319 LGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEHICLCF 357
           L GG++KH+IQEV K L KN   F   LKDLEEHICLCF
Sbjct: 936 LEGGRDKHTIQEVAKHLCKNHLYFLHQLKDLEEHICLCF 974

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543517|ref|XP_002512821.1| conserved hypothetical protein [Ricinus communis] gi|223547832|gb|EEF49324.1| conserved hypothetical protein [Ricinus communis]

 Score =  323 bits (828), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 179/373 (47%), Positives = 243/373 (65%), Gaps = 26/373 (6%)

Query: 3   QCPSINASSA--SSSIPGA------------AGNSTDGSPSSSVQQSPTFNLTQAY-LSI 47
           +C S+ +  A  S+SIP +            AGNSTDG+P S   QSP  NLT+ Y L +
Sbjct: 21  KCLSLKSPPAARSTSIPNSPPTIIDLNHDCEAGNSTDGTPVSCTLQSPVVNLTREYALYV 80

Query: 48  QTTSYHEILSRIRILDPHYRNHDQNQVEQQVEE-INED-KDPDQLLLSQVLRPNRESVKE 105
           Q+ S++E+ SRI        +H + +  +Q+E  +N D +D  Q +L+QVL PNR+ V++
Sbjct: 81  QSNSFNEMRSRI--------HHQEIENGEQIESSLNIDVEDVRQFVLAQVLHPNRQCVED 132

Query: 106 ALRLVKVNSLSDLFSTSFDHSEKTTNLCLQLLKSLFCIRTLYAPVCELLDNFPLDHHSVT 165
           ALR  K N+L+ L S  FDHSE TT+LCL L +S+F  R +Y+P+  LL+  P++  S+T
Sbjct: 133 ALRHAKPNTLTRLVSNYFDHSESTTDLCLLLHRSVFRARDIYSPIRNLLEVLPVEMDSLT 192

Query: 166 QSQCDNAFEVFLQFDSLHNPFHSPDSRKFHEMHRCFSDLKQKLDKNLQKSRSRVCFLRYA 225
           QSQCD A+E+F+QFD   NPF  P S +F  +HR FS+L Q+LD  L+KSRS+V  +R A
Sbjct: 193 QSQCDYAYEIFMQFDRCDNPFPCPFSHEFEGIHRSFSELSQQLDHRLRKSRSKVHLVRRA 252

Query: 226 TAGSSVCIIGTAVGVTIATVGVATHAIFAIFAGPLCTAC-FPCALTKKELANAAQLDAAR 284
           T  S++C IG+AV +T+  + +  HA+ AI A P C     P  LTKKELA+  QLDAA 
Sbjct: 253 TLASALCFIGSAVAITLTALAITGHALVAIVACPFCAVTSLPSNLTKKELAHVKQLDAAA 312

Query: 285 KGAYVLNKCLDTIDRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFAS 344
           +G YVLN  LDT+DRLVA L  +IE DK L+RLGLG G +K+ I EV+K LRKN P    
Sbjct: 313 RGTYVLNNELDTVDRLVALLYNSIENDKHLIRLGLGTGSDKYFISEVLKHLRKNHPTVID 372

Query: 345 LLKDLEEHICLCF 357
            LK+LE+HICL F
Sbjct: 373 QLKNLEKHICLYF 385

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543515|ref|XP_002512820.1| conserved hypothetical protein [Ricinus communis] gi|223547831|gb|EEF49323.1| conserved hypothetical protein [Ricinus communis]

 Score =  287 bits (734), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 163/373 (43%), Positives = 228/373 (61%), Gaps = 22/373 (5%)

Query: 1   MLQCPSINASSASSS--IPGA------------AGNSTDGSPSSSVQQSPTFNLTQAY-L 45
           ML C S+ + SA++S  IP +            AGNSTDG+P SS  QSP  NL   Y L
Sbjct: 1   MLPCLSLKSPSAATSTCIPDSPPTIVDLHHHSQAGNSTDGTPVSSTLQSPVVNLGHEYSL 60

Query: 46  SIQTTSYHEILSRIRILDPHYRNHDQNQVEQQVEEINEDKDPDQLLLSQVLRPNRESVKE 105
            +Q+ S++EI S       H    +  Q+E   +   +D+   Q +L++VL PNR+ V++
Sbjct: 61  YVQSNSFNEIYSGTH----HQEITNGEQIESNFDA--DDEGARQFVLARVLHPNRQCVED 114

Query: 106 ALRLVKVNSLSDLFSTSFDHSEKTTNLCLQLLKSLFCIRTLYAPVCELLDNFPLDHHSVT 165
           ALR  K N+++ L S  FDHSE  T+LCL L +S+F  R +Y+P+  LL+  P++  S+T
Sbjct: 115 ALRHAKPNTVTRLVSNFFDHSESATDLCLLLRRSVFRARAIYSPIHNLLEKLPIELESLT 174

Query: 166 QSQCDNAFEVFLQFDSLHNPFHSPDSRKFHEMHRCFSDLKQKLDKNLQKSRSRVCFLRYA 225
           QS CDNA E+ +QF+   +PF  PDS  F  +   FS+L+Q+LD    +SRSRV F+R A
Sbjct: 175 QSHCDNAHEMLVQFNRCDSPFPFPDSHNFQGVRHSFSELRQQLDNRRLRSRSRVHFVRPA 234

Query: 226 TAGSSVCIIGTAVGVTIATVGVATHAIFAIFAGPLCTAC-FPCALTKKELANAAQLDAAR 284
               ++C +G+AV +  + + +  HA+FA+ A P C A  FP  LTKKELA+  QL+AA 
Sbjct: 235 AVACALCFVGSAVTIIFSALAITGHALFAVAACPFCAAANFPRNLTKKELAHVEQLNAAA 294

Query: 285 KGAYVLNKCLDTIDRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFAS 344
           +G Y+L++ L TI  LV RL   IE DK  +RLGLG G +K+ I EV+K LRKN   F  
Sbjct: 295 RGTYMLDEHLTTIGPLVTRLHDCIESDKHFIRLGLGLGSDKYIISEVLKHLRKNHLKFFD 354

Query: 345 LLKDLEEHICLCF 357
            LK LE+HICL F
Sbjct: 355 QLKVLEDHICLYF 367

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42565016|ref|NP_188564.2| uncharacterized protein [Arabidopsis thaliana] gi|158706504|sp|Q9LT84.2|U496M_ARATH RecName: Full=UPF0496 protein At3g19330 gi|332642703|gb|AEE76224.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  278 bits (710), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 166/370 (44%), Positives = 229/370 (61%), Gaps = 25/370 (6%)

Query: 1   MLQCPSINASSASSSI-------PGAAGNSTDGSPSSSVQQSPTFNLTQAYL-SIQTTSY 52
           M  C S N +S  +S+       P         S + +   SPTFNL++    + QT SY
Sbjct: 1   MRNCLSFNPASPEASLGDDPLPHPSLESGVASTSRNDASISSPTFNLSRELAHAFQTPSY 60

Query: 53  HEILSRIRILDPHYRNHDQNQVEQQVEEINEDKDPD-QLLLSQVLRPNRESVKEALRLVK 111
           H++ SR+ ++       D  Q+  ++ +      PD +LLLSQVL+PN+E V+EA+R VK
Sbjct: 61  HDVRSRVHVVV------DLTQIHHRLIQ------PDIELLLSQVLQPNKECVQEAIRHVK 108

Query: 112 VNSLSDLFSTSFDHSEKTTNLCLQLLKSLFCIRT-LYAPVCELLDNFPLDH-HSVTQSQC 169
             +L++L ST F HSE  T LCL L +++   R  LY P+ +L + FP D   ++ +S C
Sbjct: 109 QTTLTNLVSTYFQHSEDATRLCLNLYQNVHSARHHLYTPLLDLFNIFPGDSLPAIDESLC 168

Query: 170 DNAFEVFLQFDSLHNPFHSPDSRKFHEMHRCFSDLKQKLDKNLQKSRSRVCFLRYATAGS 229
           D AF+VFL+ D+  NPF SP+S  F +   CFS LK  LD+ L+KSRSRV  + +ATAGS
Sbjct: 169 DLAFDVFLKLDTFENPFSSPESYSFRDTQLCFSQLKHNLDRRLRKSRSRVRLIHHATAGS 228

Query: 230 SVCIIGTAVGVTIATVGVATHA--IFAIFAGPLCTACFPCALTKKELANAAQLDAARKGA 287
           S+C++   V V  + V +A+HA  I  + AGPLC+   P +  +KEL N  QL+AA KG 
Sbjct: 229 SLCLVAAVVAVAASAVVIASHALPILLVVAGPLCSPYLPHSFKRKELTNICQLNAASKGT 288

Query: 288 YVLNKCLDTIDRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLK 347
           +VLNK LDTIDRLV+RL T IE DK L+RLGL  G++ HSIQE++K LRK+       LK
Sbjct: 289 FVLNKDLDTIDRLVSRLHTGIEYDKFLIRLGLERGRDVHSIQEILKLLRKSHLPLTHQLK 348

Query: 348 DLEEHICLCF 357
           DLE+HICL F
Sbjct: 349 DLEDHICLWF 358

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11994455|dbj|BAB02457.1| unnamed protein product [Arabidopsis thaliana]

 Score =  277 bits (709), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 166/370 (44%), Positives = 229/370 (61%), Gaps = 25/370 (6%)

Query: 1   MLQCPSINASSASSSI-------PGAAGNSTDGSPSSSVQQSPTFNLTQAYL-SIQTTSY 52
           M  C S N +S  +S+       P         S + +   SPTFNL++    + QT SY
Sbjct: 1   MRNCLSFNPASPEASLGDDPLPHPSLESGVASTSRNDASISSPTFNLSRELAHAFQTPSY 60

Query: 53  HEILSRIRILDPHYRNHDQNQVEQQVEEINEDKDPD-QLLLSQVLRPNRESVKEALRLVK 111
           H++ SR+ ++       D  Q+  ++ +      PD +LLLSQVL+PN+E V+EA+R VK
Sbjct: 61  HDVRSRVHVVV------DLTQIHHRLIQ------PDIELLLSQVLQPNKECVQEAIRHVK 108

Query: 112 VNSLSDLFSTSFDHSEKTTNLCLQLLKSLFCIRT-LYAPVCELLDNFPLDH-HSVTQSQC 169
             +L++L ST F HSE  T LCL L +++   R  LY P+ +L + FP D   ++ +S C
Sbjct: 109 QTTLTNLVSTYFQHSEDATRLCLNLYQNVHSARHHLYTPLLDLFNIFPGDSLPAIDESLC 168

Query: 170 DNAFEVFLQFDSLHNPFHSPDSRKFHEMHRCFSDLKQKLDKNLQKSRSRVCFLRYATAGS 229
           D AF+VFL+ D+  NPF SP+S  F +   CFS LK  LD+ L+KSRSRV  + +ATAGS
Sbjct: 169 DLAFDVFLKLDTFENPFSSPESYSFRDTQLCFSQLKHNLDRRLRKSRSRVRLIHHATAGS 228

Query: 230 SVCIIGTAVGVTIATVGVATHA--IFAIFAGPLCTACFPCALTKKELANAAQLDAARKGA 287
           S+C++   V V  + V +A+HA  I  + AGPLC+   P +  +KEL N  QL+AA KG 
Sbjct: 229 SLCLVAAVVAVAASAVVIASHALPILLVVAGPLCSPYLPHSFKRKELTNICQLNAASKGT 288

Query: 288 YVLNKCLDTIDRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLK 347
           +VLNK LDTIDRLV+RL T IE DK L+RLGL  G++ HSIQE++K LRK+       LK
Sbjct: 289 FVLNKDLDTIDRLVSRLHTGIEYDKFLIRLGLERGRDVHSIQEILKLLRKSHLPLTHQLK 348

Query: 348 DLEEHICLCF 357
           DLE+HICL F
Sbjct: 349 DLEDHICLWF 358

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830582|ref|XP_002883173.1| hypothetical protein ARALYDRAFT_479449 [Arabidopsis lyrata subsp. lyrata] gi|297329013|gb|EFH59432.1| hypothetical protein ARALYDRAFT_479449 [Arabidopsis lyrata subsp. lyrata]

 Score =  261 bits (668), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 158/369 (42%), Positives = 211/369 (57%), Gaps = 55/369 (14%)

Query: 1   MLQCPSINASSASSSI-------PGAAGNSTDGSPSSSVQQSPTFNLTQAYL-SIQTTSY 52
           M  C S N +S   S+       P         S + +  QSPTFNL++    + QT SY
Sbjct: 1   MRNCLSFNPASPEVSLGDDPLPHPSIESGEASTSRNDASIQSPTFNLSRELAHAFQTPSY 60

Query: 53  HEILSRIRIL-DPHYRNHDQNQVEQQVEEINEDKDPD-QLLLSQVLRPNRESVKEALRLV 110
           H++ SR+ ++ DP   +H   Q             PD +LL+SQVL+PN+E V+EA+R  
Sbjct: 61  HDVRSRVHVVVDPTQHHHQYIQ-------------PDIELLISQVLQPNKECVQEAIRHF 107

Query: 111 KVNSLSDLFSTSFDHSEKTTNLCLQLLKSLFCIRT-LYAPVCELLDNFPLDHHS-VTQSQ 168
           K  +L+ L ST F HSE  T LCL L +++   R  LY P+ +L ++FP D H+ + +S 
Sbjct: 108 KQTTLTHLVSTYFQHSENATRLCLNLYQNVHSARHHLYTPLLDLFNSFPGDTHAAIDESL 167

Query: 169 CDNAFEVFLQFDSLHNPFHSPDSRKFHEMHRCFSDLKQKLDKNLQKSRSRVCFLRYATAG 228
           C+ AF+VFL+ D+  NPF SP+S  F +   CFS LK  LD+ L+KSRSRV  + +ATAG
Sbjct: 168 CNLAFDVFLKLDTFENPFSSPESHSFQDTQLCFSQLKNNLDRRLRKSRSRVRLIHHATAG 227

Query: 229 SSVCIIGTAVGVTIATVGVATHAIFAIFAGPLCTACFPCALTKKELANAAQLDAARKGAY 288
                                         PLC+   P +  +KEL N  QL+AA KG +
Sbjct: 228 ------------------------------PLCSPYLPHSFKRKELTNICQLNAASKGTF 257

Query: 289 VLNKCLDTIDRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKD 348
           VLNK LDTIDRLV+RL + IE DK L+RLGL  G++ HSIQE+VKQLRKN  N    LKD
Sbjct: 258 VLNKDLDTIDRLVSRLHSGIEYDKHLIRLGLERGRDLHSIQEIVKQLRKNNLNLTHQLKD 317

Query: 349 LEEHICLCF 357
           LE+HICL F
Sbjct: 318 LEDHICLWF 326

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42572487|ref|NP_974339.1| uncharacterized protein [Arabidopsis thaliana] gi|189339296|gb|ACD89068.1| At3g19330 [Arabidopsis thaliana] gi|332642705|gb|AEE76226.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 154/368 (41%), Positives = 210/368 (57%), Gaps = 53/368 (14%)

Query: 1   MLQCPSINASSASSSI-------PGAAGNSTDGSPSSSVQQSPTFNLTQAYL-SIQTTSY 52
           M  C S N +S  +S+       P         S + +   SPTFNL++    + QT SY
Sbjct: 1   MRNCLSFNPASPEASLGDDPLPHPSLESGVASTSRNDASISSPTFNLSRELAHAFQTPSY 60

Query: 53  HEILSRIRILDPHYRNHDQNQVEQQVEEINEDKDPD-QLLLSQVLRPNRESVKEALRLVK 111
           H++ SR+ ++       D  Q+  ++ +      PD +LLLSQVL+PN+E V+EA+R VK
Sbjct: 61  HDVRSRVHVVV------DLTQIHHRLIQ------PDIELLLSQVLQPNKECVQEAIRHVK 108

Query: 112 VNSLSDLFSTSFDHSEKTTNLCLQLLKSLFCIRT-LYAPVCELLDNFPLDH-HSVTQSQC 169
             +L++L ST F HSE  T LCL L +++   R  LY P+ +L + FP D   ++ +S C
Sbjct: 109 QTTLTNLVSTYFQHSEDATRLCLNLYQNVHSARHHLYTPLLDLFNIFPGDSLPAIDESLC 168

Query: 170 DNAFEVFLQFDSLHNPFHSPDSRKFHEMHRCFSDLKQKLDKNLQKSRSRVCFLRYATAGS 229
           D AF+VFL+ D+  NPF SP+S  F +   CFS LK  LD+ L+KSRSRV  + +ATAG 
Sbjct: 169 DLAFDVFLKLDTFENPFSSPESYSFRDTQLCFSQLKHNLDRRLRKSRSRVRLIHHATAG- 227

Query: 230 SVCIIGTAVGVTIATVGVATHAIFAIFAGPLCTACFPCALTKKELANAAQLDAARKGAYV 289
                                        PLC+   P +  +KEL N  QL+AA KG +V
Sbjct: 228 -----------------------------PLCSPYLPHSFKRKELTNICQLNAASKGTFV 258

Query: 290 LNKCLDTIDRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKDL 349
           LNK LDTIDRLV+RL T IE DK L+RLGL  G++ HSIQE++K LRK+       LKDL
Sbjct: 259 LNKDLDTIDRLVSRLHTGIEYDKFLIRLGLERGRDVHSIQEILKLLRKSHLPLTHQLKDL 318

Query: 350 EEHICLCF 357
           E+HICL F
Sbjct: 319 EDHICLWF 326

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145338705|ref|NP_188556.2| uncharacterized protein [Arabidopsis thaliana] gi|75273581|sp|Q9LJK4.1|U496L_ARATH RecName: Full=UPF0496 protein At3g19250 gi|9294627|dbj|BAB02966.1| unnamed protein product [Arabidopsis thaliana] gi|91806441|gb|ABE65948.1| hypothetical protein At3g19250 [Arabidopsis thaliana] gi|332642692|gb|AEE76213.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 151/351 (43%), Positives = 208/351 (59%), Gaps = 26/351 (7%)

Query: 14  SSIPGAAGNSTDGSPSSSVQQSPTFNLTQAYL-SIQTTSYHEILSRIRILDPHYRNHDQN 72
           +S  G+ G+     PS     + TFNL+     + QT SYH+I SR+ ++DP        
Sbjct: 10  ASPEGSLGDDHLPHPSPEGSVASTFNLSHELAHAFQTPSYHDIRSRLLVIDP-------- 61

Query: 73  QVEQQVEEINEDKDPDQLLLSQVLRPNRESVKEALRL--VKVNSLSDLFSTSFDHSEKTT 130
             ++ +E          L LSQ LRPN ESV+EAL L   K  +L++L ST F HSE  T
Sbjct: 62  -TQENLE----------LFLSQELRPNNESVQEALSLRHAKQTTLTNLVSTYFQHSEDAT 110

Query: 131 NLCLQLLKSLFCIR-TLYAPVCELLDNFPLDHHS-VTQSQCDNAFEVFLQFDSLHNPFHS 188
             CL L +++   R  LY P+ +L + FP D HS + +S C+ AF+VFL+ D+  NPF S
Sbjct: 111 RFCLNLYQNVHSARCHLYTPLLDLFNIFPRDSHSAIDESFCNLAFDVFLKLDTFENPFAS 170

Query: 189 PDSRKFHEMHRCFSDLKQKLDKNLQKSRSRVCFLRYATAGSSVCIIGTAVGVTIATVGVA 248
           P+S  F +   CF  L  KLD  ++KS+SRV  L +ATAGS++C++   V V  +   +A
Sbjct: 171 PESHSFQDTQLCFYQLADKLDTRIRKSKSRVRLLHHATAGSALCLVTAVVVVAASAAFIA 230

Query: 249 THAIFAIF--AGPLCTACFPCALTKKELANAAQLDAARKGAYVLNKCLDTIDRLVARLCT 306
            HA+  I   AGPLCT   P +  KKEL+N  QL+ A KG + LNK LDTIDRLV+RL T
Sbjct: 231 YHALPTILVVAGPLCTPYLPHSFKKKELSNIFQLNVAAKGTFALNKDLDTIDRLVSRLHT 290

Query: 307 AIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEHICLCF 357
            ++ DK L+RLGL  G++ ++I E VKQLRK+  N    L+ L +HIC  F
Sbjct: 291 GVKNDKLLIRLGLERGRDVYTIPEFVKQLRKSHVNHTHQLEVLVDHICRWF 341

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116831218|gb|ABK28563.1| unknown [Arabidopsis thaliana]

 Score =  248 bits (634), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 151/351 (43%), Positives = 208/351 (59%), Gaps = 26/351 (7%)

Query: 14  SSIPGAAGNSTDGSPSSSVQQSPTFNLTQAYL-SIQTTSYHEILSRIRILDPHYRNHDQN 72
           +S  G+ G+     PS     + TFNL+     + QT SYH+I SR+ ++DP        
Sbjct: 10  ASPEGSLGDDHLPHPSPEGSVASTFNLSHELAHAFQTPSYHDIRSRLLVIDP-------- 61

Query: 73  QVEQQVEEINEDKDPDQLLLSQVLRPNRESVKEAL--RLVKVNSLSDLFSTSFDHSEKTT 130
             ++ +E          L LSQ LRPN ESV+EAL  R  K  +L++L ST F HSE  T
Sbjct: 62  -TQENLE----------LFLSQELRPNNESVQEALSLRHAKQTTLTNLVSTYFQHSEDAT 110

Query: 131 NLCLQLLKSLFCIR-TLYAPVCELLDNFPLDHHS-VTQSQCDNAFEVFLQFDSLHNPFHS 188
             CL L +++   R  LY P+ +L + FP D HS + +S C+ AF+VFL+ D+  NPF S
Sbjct: 111 RFCLNLYQNVHSARCHLYTPLLDLFNIFPRDSHSAIDESFCNLAFDVFLKLDTFENPFAS 170

Query: 189 PDSRKFHEMHRCFSDLKQKLDKNLQKSRSRVCFLRYATAGSSVCIIGTAVGVTIATVGVA 248
           P+S  F +   CF  L  KLD  ++KS+SRV  L +ATAGS++C++   V V  +   +A
Sbjct: 171 PESHSFQDTQLCFYQLADKLDTRIRKSKSRVRLLHHATAGSALCLVTAVVVVAASAAFIA 230

Query: 249 THAIFAIF--AGPLCTACFPCALTKKELANAAQLDAARKGAYVLNKCLDTIDRLVARLCT 306
            HA+  I   AGPLCT   P +  KKEL+N  QL+ A KG + LNK LDTIDRLV+RL T
Sbjct: 231 YHALPTILVVAGPLCTPYLPHSFKKKELSNIFQLNVAAKGTFALNKDLDTIDRLVSRLHT 290

Query: 307 AIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEHICLCF 357
            ++ DK L+RLGL  G++ ++I E VKQLRK+  N    L+ L +HIC  F
Sbjct: 291 GVKNDKLLIRLGLERGRDVYTIPEFVKQLRKSHVNHTHQLEVLVDHICRWF 341

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	367
TAIR|locus:2090624	382	AT3G19330 "AT3G19330" [Arabido	0.847	0.814	0.437	9e-61
TAIR|locus:2094123	360	AT3G19250 "AT3G19250" [Arabido	0.844	0.861	0.411	1.4e-55
TAIR|locus:2101363	416	AT3G49070 [Arabidopsis thalian	0.694	0.612	0.276	4.8e-14
TAIR|locus:2198591	390	AT1G20180 "AT1G20180" [Arabido	0.512	0.482	0.234	1.5e-07

TAIR|locus:2090624 AT3G19330 "AT3G19330" [Arabidopsis thaliana (taxid:3702)]

 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 144/329 (43%), Positives = 192/329 (58%)

Query:    35 SPTFNLTQAYL-SIQTTSYHEILSRIRILDPHYRNHDXXXXXXXXXXXXXDKDPD-QLLL 92
             SPTFNL++    + QT SYH++ SR+ ++    + H                 PD +LLL
Sbjct:    42 SPTFNLSRELAHAFQTPSYHDVRSRVHVVVDLTQIHHRLI------------QPDIELLL 89

Query:    93 SQVLRPNRESVKEALRLVKVNSLSDLFSTSFDHSEKTTNLCLQLLKSLFCIRT-LYAPVC 151
             SQVL+PN+E V+EA+R VK  +L++L ST F HSE  T LCL L +++   R  LY P+ 
Sbjct:    90 SQVLQPNKECVQEAIRHVKQTTLTNLVSTYFQHSEDATRLCLNLYQNVHSARHHLYTPLL 149

Query:   152 ELLDNFPLDH-HSVTQSQCDNAFEVFLQFDSLHNPFHSPDSRKFHEMHRCFSXXXXXXXX 210
             +L + FP D   ++ +S CD AF+VFL+ D+  NPF SP+S  F +   CFS        
Sbjct:   150 DLFNIFPGDSLPAIDESLCDLAFDVFLKLDTFENPFSSPESYSFRDTQLCFSQLKHNLDR 209

Query:   211 XXXXSRSRVCFLRYATAGSSVCXXXXXXXXXXXXXXXXXXXX--FAIFAGPLCTACFPCA 268
                 SRSRV  + +ATAGSS+C                        + AGPLC+   P +
Sbjct:   210 RLRKSRSRVRLIHHATAGSSLCLVAAVVAVAASAVVIASHALPILLVVAGPLCSPYLPHS 269

Query:   269 LTKKELANAAQLDAARKGAYVLNKCLDTIDRLVARLCTAIEGDKQLVRLGLGGGKEKHSI 328
               +KEL N  QL+AA KG +VLNK LDTIDRLV+RL T IE DK L+RLGL  G++ HSI
Sbjct:   270 FKRKELTNICQLNAASKGTFVLNKDLDTIDRLVSRLHTGIEYDKFLIRLGLERGRDVHSI 329

Query:   329 QEVVKQLRKNQPNFASLLKDLEEHICLCF 357
             QE++K LRK+       LKDLE+HICL F
Sbjct:   330 QEILKLLRKSHLPLTHQLKDLEDHICLWF 358

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2094123 AT3G19250 "AT3G19250" [Arabidopsis thaliana (taxid:3702)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 139/338 (41%), Positives = 185/338 (54%)

Query:    27 SPSSSVQQSPTFNLTQAYL-SIQTTSYHEILSRIRILDPHYRNHDXXXXXXXXXXXXXDK 85
             SP  SV  + TFNL+     + QT SYH+I SR+ ++DP   N +               
Sbjct:    25 SPEGSV--ASTFNLSHELAHAFQTPSYHDIRSRLLVIDPTQENLE--------------- 67

Query:    86 DPDQLLLSQVLRPNRESVKEALRL--VKVNSLSDLFSTSFDHSEKTTNLCLQLLKSLFCI 143
                 L LSQ LRPN ESV+EAL L   K  +L++L ST F HSE  T  CL L +++   
Sbjct:    68 ----LFLSQELRPNNESVQEALSLRHAKQTTLTNLVSTYFQHSEDATRFCLNLYQNVHSA 123

Query:   144 RT-LYAPVCELLDNFPLDHHS-VTQSQCDNAFEVFLQFDSLHNPFHSPDSRKFHEMHRCF 201
             R  LY P+ +L + FP D HS + +S C+ AF+VFL+ D+  NPF SP+S  F +   CF
Sbjct:   124 RCHLYTPLLDLFNIFPRDSHSAIDESFCNLAFDVFLKLDTFENPFASPESHSFQDTQLCF 183

Query:   202 SXXXXXXXXXXXXSRSRVCFLRYATAGSSVCXXXXXXXXXXXXXXXXXXX--XFAIFAGP 259
                          S+SRV  L +ATAGS++C                        + AGP
Sbjct:   184 YQLADKLDTRIRKSKSRVRLLHHATAGSALCLVTAVVVVAASAAFIAYHALPTILVVAGP 243

Query:   260 LCTACFPCALTKKELANAAQLDAARKGAYVLNKCLDTIDRLVARLCTAIEGDKQLVRLGL 319
             LCT   P +  KKEL+N  QL+ A KG + LNK LDTIDRLV+RL T ++ DK L+RLGL
Sbjct:   244 LCTPYLPHSFKKKELSNIFQLNVAAKGTFALNKDLDTIDRLVSRLHTGVKNDKLLIRLGL 303

Query:   320 GGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEHICLCF 357
               G++ ++I E VKQLRK+  N    L+ L +HIC  F
Sbjct:   304 ERGRDVYTIPEFVKQLRKSHVNHTHQLEVLVDHICRWF 341

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2101363 AT3G49070 [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 4.8e-14, P = 4.8e-14
 Identities = 76/275 (27%), Positives = 123/275 (44%)

Query:    89 QLLLSQVLRPNRESVKEALRLVKVNSLS-DLFSTSFDHSEKTTNLCLQLLKSLFCIRTLY 147
             +L    +L P+  ++   L + +V   +  L S  F  +     LC QLLK++  +R+ Y
Sbjct:   123 RLFAHNLLDPDLNTITRILDVSRVGRHTRTLLSDYFLETANAFLLCTQLLKNIHHLRSKY 182

Query:   148 APVCELLDNFPLDHHSVTQSQCDNAFEVFLQFDSLHNPFHSPDSRKFHEMHRCFSXXXXX 207
                  L   F  ++H+ + +  D   E+   FD    PF S  SR       C       
Sbjct:   183 E---SLKPKFHSENHN-SLALIDQFTEISKWFD----PFISSGSRIQLIRSGCL-YLLKR 233

Query:   208 XXXXXXXSRSRVCFLRYATAGSSVCXXXXXXXXXXXXXXXXXXXXFAIF-AGP-LCTACF 265
                    +R+++  +   T  S +                     FA+F A P L  + F
Sbjct:   234 LESRRDKTRAKLKLINGLTHSSGLLVLALTTTLIVTIASHA----FALFLAAPTLLASQF 289

Query:   266 -PCALTKKELANAAQLDAARKGAYVLNKCLDTIDRLVARLCTAIEGDKQLVR--LGLGGG 322
              P  L  K    AA+LD A KG Y+L++ LDTI RLV R+   +   + +    +G G G
Sbjct:   290 KPAGLRNKLTKTAARLDVAAKGTYILSRDLDTISRLVTRINDEVNHVRAMAEFWVGRGSG 349

Query:   323 KEKHSIQEVVKQLRKNQPNFASLLKDLEEHICLCF 357
             + + S +EV ++L++ + +F+  L +LEEHI LCF
Sbjct:   350 RVRGS-EEVARELKRCEESFSEELDELEEHIYLCF 383

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2198591 AT1G20180 "AT1G20180" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 48/205 (23%), Positives = 80/205 (39%)

Query:   169 CDNAFEVFLQFDSLHNPF-HSPDSRKFHEMHRCFSXXXXXXXXXXXXSRSRVCFLRYATA 227
             C   F+   +F +L NP     +  +F  +H   S             R ++ F ++   
Sbjct:   168 CALIFQELSRFAALKNPLCRIVNEAQFRIVHDANSDLLTKLTSKKRRIRRKIRFFKFCKK 227

Query:   228 GSSVCXXXXXXXXXXXXXXXXXXXXFAIFAGP-LCTACFPCALTKKEL------AN---- 276
                                        +FA P L   C  C L KK+       +N    
Sbjct:   228 LGGYSLVITHSAIVITLLIIALHSILGVFAAPALLGLCSFCLLRKKKAKGRMHKSNKDTT 287

Query:   277 ----AAQLDAARKGAYVLNKCLDTIDRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVV 332
                   Q+D A KG ++L   LDT+ RL  RLC  IE  K +  +     ++   ++E +
Sbjct:   288 LEKLGTQIDIAAKGMFILINDLDTLSRLAGRLCDEIEHRKTVAAM-CAKSRKIEVLKEAL 346

Query:   333 KQLRKNQPNFASLLKDLEEHICLCF 357
             ++   ++  F+  L++LEEH+ LCF
Sbjct:   347 REFNGHEEKFSDQLQELEEHLYLCF 371


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.136   0.416    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      367       303   0.00097  115 3  11 22  0.47    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  591 (63 KB)
  Total size of DFA:  208 KB (2115 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.63u 0.08s 24.71t   Elapsed:  00:00:03
  Total cpu time:  24.63u 0.08s 24.71t   Elapsed:  00:00:03
  Start:  Tue May 21 01:06:24 2013   End:  Tue May 21 01:06:27 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LT84	U496M_ARATH	No assigned EC number	0.4486	0.9400	0.9031	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: AT3G19330 polyadenylate-binding protein-related / PABP-related; polyadenylate-binding protein-related / PABP-related; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- plasma membrane; EXPRESSED IN- shoot apex, flower, seed; EXPRESSED DURING- petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF677 (InterPro-IPR007749); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G19250.1); Has 66 Blast hits to 66 proteins in 6 species- Archae - 0; Bacteria - 0; Metaz [...] (382 aa) (Arabidopsis thaliana)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	367
pfam05055	336	pfam05055, DUF677, Protein of unknown function (DU	1e-05

>gnl|CDD|218403 pfam05055, DUF677, Protein of unknown function (DUF677)

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 58/310 (18%), Positives = 121/310 (39%), Gaps = 36/310 (11%)

Query: 67  RNHDQ-NQVEQQVEEINEDKDPDQLLLSQVLRPNRESVKEALRLVKVNSLSDLFSTSFDH 125
            +HD   +V + + E+N+D       + +V+  ++E V E         L  L +  F+ 
Sbjct: 28  LSHDSLMEVTKCLLEMNQD-------VVKVIIESKEDVWEN------QDLFSLVNVYFES 74

Query: 126 SEKTTNLCLQLLKSLFCIRTLYAPVCELLDNFPLDHHSVTQSQCDNAFEVFLQ----FDS 181
           ++KT + C  L   +         + E +  F  +       +    +E  L+    F +
Sbjct: 75  TKKTLDFCETLENCVERAERSQLLIREAVAQFEKESLDKDVGKKKKKYEKTLEELKKFKA 134

Query: 182 LHNPFHSPD-SRKFHEMHRC-------FSDLKQKLDKNLQ--KSRSRVCFLRYATAGSSV 231
           + +PF   + + +F  +++            K+KLDK L+  K+   +  + +  A  +V
Sbjct: 135 MGDPFDGEEFTTQFQSVYKQQVLMLEELRKTKKKLDKKLRNIKTWRIISNVVFVAAFVAV 194

Query: 232 CIIGTAVGVTIATVGVATHAIFAIFAGPLCTACFPC--ALTKKELANAAQLDAA---RKG 286
            ++ + V   +    V    +    A PL         A  K E A   Q +      KG
Sbjct: 195 -LVLSVVAAAMGAPPVV--GVAGALAVPLEAVGKWVGSAWKKYEEALKRQKEIISSMEKG 251

Query: 287 AYVLNKCLDTIDRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLL 346
             V  K ++ I  LV RL + I    + V   +   + + +++  + +++K        +
Sbjct: 252 IQVNVKDMENISILVDRLESEITSMLKTVEFAVEHEENEVAVRIAMDEIKKKVEVLTEKI 311

Query: 347 KDLEEHICLC 356
           +++ E    C
Sbjct: 312 EEVGEEAAKC 321

This family consists of AT14A like proteins from Arabidopsis thaliana. At14a has a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and localises partly to the plasma membrane. Length = 336

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	367
PF05055	336	DUF677: Protein of unknown function (DUF677); Inte	100.0
PF05633	389	DUF793: Protein of unknown function (DUF793); Inte	98.72

>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants

Probab=100.00  E-value=5.7e-86  Score=650.15  Aligned_cols=278  Identities=35%  Similarity=0.478  Sum_probs=263.7

Q ss_pred             CCCch-hhhhhcccCCCHHHHHHHHHhc----CCCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcCC
Q 017724           84 DKDPD-QLLLSQVLRPNRESVKEALRLV----KVNSLSDLFSTSFDHSEKTTNLCLQLLKSLFCIRTLYAPVCELLDNFP  158 (367)
Q Consensus        84 ~~~~s-~~~~~~LLep~Qe~V~~iL~~~----k~~eL~~Lv~~YFd~S~~As~lC~~Llk~I~~aR~~y~~I~~~L~~~~  158 (367)
                      .++|| ++|+++|||||||||++||+++    ++|+|++||++|||+|++||+||++|++||+|||.+|++|+++|++|+
T Consensus        28 ~s~~s~~~~t~~Lle~~Qevv~~ile~~~di~~~~~L~~Lv~~YFd~S~~a~~~C~~L~k~I~~aR~~~~~I~~al~~~~  107 (336)
T PF05055_consen   28 LSFDSLKEVTECLLEMNQEVVKVILECKKDIWKNPELFRLVSDYFDSSLEASDFCEALLKCIHRARDNYLPIRRALKQFE  107 (336)
T ss_pred             CChHHHHHHHHHHhCCChHHHHHHHHHHHHhhcChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Confidence            35888 7999999999999999999998    789999999999999999999999999999999999999999999999


Q ss_pred             CCCCC----cccccchHHHHHHHhhhhcCCCCCCc-chhhHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhcccceee
Q 017724          159 LDHHS----VTQSQCDNAFEVFLQFDSLHNPFHSP-DSRKFHEMHRCFSDLKQKLDKNLQKSRSRVCFLRYATAGSSVCI  233 (367)
Q Consensus       159 ~e~~~----~~~~~~~~~l~~l~~F~~~~NPFs~~-~~~~Fq~v~~~~~~Ll~kL~s~k~K~~rKlk~ir~~~~vS~i~~  233 (367)
                      .|+.+    .++++|++|+++|++|++++|||+++ ++.+||+||++|++||++|+++|+|++||+|++|+|+++|++||
T Consensus       108 ~e~~~~d~g~~~~~~~~tl~eL~~F~~~~NPFs~~~~~~~F~~i~~~~~~Ll~kL~~~k~Kl~kklk~~r~~~kvs~v~f  187 (336)
T PF05055_consen  108 KESLDTDVGVSQKKYDKTLEELKKFKAAGNPFSDEEFFHQFQSIHDQQSSLLEKLDSRKKKLRKKLKLVRTWRKVSNVCF  187 (336)
T ss_pred             hccccccccccchhHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            98643    35899999999999999999999998 99999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHH------HHHHhhccccc--cccchhhhHHHHHH---HHHHHHHHhcceeeccccccHHHHHH
Q 017724          234 IGTAVGVTIATVGVATHA------IFAIFAGPLCT--ACFPCALTKKELAN---AAQLDAARKGAYVLNKCLDTIDRLVA  302 (367)
Q Consensus       234 Vaa~~av~i~~vV~Aaha------laglva~P~~~--~~~~~~~kkke~al---~~QldaaakGTYIl~kDlDTIsrLV~  302 (367)
                      |++|++|+|++||+|+||      +||++++|+++  +|++.+|+||++++   ++|+|+|+|||||+++|||||||||+
T Consensus       188 vaa~~aV~i~svv~aa~a~~~vv~~aa~~a~P~~~~gkw~~~~~~k~~~al~~~~~~l~~aakGtyI~~~DldTIsrLV~  267 (336)
T PF05055_consen  188 VAAFVAVAIASVVAAAHAVPAVVALAAALAAPIGSVGKWCGSLWKKYEEALKKQKEQLDAAAKGTYILIKDLDTISRLVD  267 (336)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHccchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhhHHHHHH
Confidence            999999999999999994      45666789887  49999999998775   46678999999999999999999999


Q ss_pred             HHhhHhHhhHHHHHHHhhCCCCcccHHHHHHHHHhhhhhHHHhHHHHHHHHhhhhhccc
Q 017724          303 RLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEHICLCFRPSF  361 (367)
Q Consensus       303 RL~deIE~~~~~v~fale~~~~~~~vkevv~elkk~~~~f~~qleELeEhv~lCf~tI~  361 (367)
                      ||+||||||+++||||++++++++.+++||+||+|++++|++||||||||||+||+||+
T Consensus       268 RL~deIE~~~~~v~fave~~~d~~~vk~vv~el~k~~~~f~~qleELeehv~lC~~tIn  326 (336)
T PF05055_consen  268 RLEDEIEHMKALVDFAVERGEDEEAVKEVVKELKKNVESFTEQLEELEEHVYLCFKTIN  326 (336)
T ss_pred             HHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999997

This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].

>PF05633 DUF793: Protein of unknown function (DUF793); InterPro: IPR008511 This entry includes Protein BYPASS 1 which is required for normal root and shoot development

Probab=98.72  E-value=1.9e-07  Score=94.52  Aligned_cols=264  Identities=15%  Similarity=0.117  Sum_probs=161.0

Q ss_pred             hhhhhcccCCCHHHHHHHHHhcC-----CCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcCCCCCCC
Q 017724           89 QLLLSQVLRPNRESVKEALRLVK-----VNSLSDLFSTSFDHSEKTTNLCLQLLKSLFCIRTLYAPVCELLDNFPLDHHS  163 (367)
Q Consensus        89 ~~~~~~LLep~Qe~V~~iL~~~k-----~~eL~~Lv~~YFd~S~~As~lC~~Llk~I~~aR~~y~~I~~~L~~~~~e~~~  163 (367)
                      +..++.+|.=. +-++.+|...+     .|.+..+|.+|||.|.+++|+|+++...|.+.|..|+.+.-++..++... .
T Consensus        70 ~~~ld~~l~~~-~efr~li~~~~~~~~s~~~~dk~v~eylD~sVKlLDvCNA~~~gi~~lr~~~~ll~~al~~L~~~~-~  147 (389)
T PF05633_consen   70 RKALDSFLCCH-EEFRALITNLRDLPLSKPPDDKWVDEYLDRSVKLLDVCNAIRDGISQLRQWQLLLQIALHALDSSR-P  147 (389)
T ss_pred             HHHHHHHHHHH-HHHHHHHhcccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-C
Confidence            45556665544 44455544332     25588999999999999999999999999999999999999999887662 3


Q ss_pred             cccccchHHHHHHHhhhh-------------------cC------CCCCC----cchhhHHHHHh---hhHHHHHHHHHH
Q 017724          164 VTQSQCDNAFEVFLQFDS-------------------LH------NPFHS----PDSRKFHEMHR---CFSDLKQKLDKN  211 (367)
Q Consensus       164 ~~~~~~~~~l~~l~~F~~-------------------~~------NPFs~----~~~~~Fq~v~~---~~~~Ll~kL~s~  211 (367)
                      +++.++..+-..|..+..                   ++      ++-+.    .....|++.-=   +.-+=-+.|+..
T Consensus       148 ~~~~~~rRAr~aL~dl~~~~~~~~~~~~~~~~~rnrs~~r~~~~~~~~~~s~~~~~~~~~rsls~~vsr~wsa~~~Lq~m  227 (389)
T PF05633_consen  148 LGEGQLRRARKALSDLKIAMLDDKDSGSSGGSHRNRSFGRSNSSGRRSSSSSGSRSAGHFRSLSWSVSRNWSAARQLQAM  227 (389)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhcccccCcccccccccccccccCCCCCCCCccccCCcccchhhhhhhhhhhhhHHHHHHH
Confidence            566677777666655542                   01      11110    11224443211   111122333322


Q ss_pred             HHHHH-hhhhhhhhhhcccceeehhhhHHHHHHHHHHHHHHH--HHHh----hccccccccchhhhHHHHHHHHHHHHH-
Q 017724          212 LQKSR-SRVCFLRYATAGSSVCIIGTAVGVTIATVGVATHAI--FAIF----AGPLCTACFPCALTKKELANAAQLDAA-  283 (367)
Q Consensus       212 k~K~~-rKlk~ir~~~~vS~i~~Vaa~~av~i~~vV~Aahal--aglv----a~P~~~~~~~~~~kkke~al~~Qldaa-  283 (367)
                      -.++. -|.+-...-+.+...++...++.+.|+.+++||..-  -|+.    ++|=-.+|.+++..=.++ +.+..+-- 
T Consensus       228 ~~nL~~Pk~~esak~~gL~~A~Y~m~~vtvFV~~vlVAA~pc~~rgL~~~l~~vP~~~~WA~s~~~LQ~r-I~eEikkk~  306 (389)
T PF05633_consen  228 GENLVLPKGKESAKGRGLLRAMYGMKSVTVFVCWVLVAAFPCQDRGLQVHLSAVPRQFSWAPSFISLQER-INEEIKKKE  306 (389)
T ss_pred             HhcCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHeeecCCccccCCCCCCccccccchHHHHHHHH-HHHHHhhcc
Confidence            22222 111111111111122334445566666666666522  1332    134334677655432221 22222222 


Q ss_pred             HhcceeeccccccHHHHHHHHhhHhHhhHHHHHHHhhCCCCcccHHHHHHHHHhhhhhHHHhHHHHHHHHhhhhhcc
Q 017724          284 RKGAYVLNKCLDTIDRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEHICLCFRPS  360 (367)
Q Consensus       284 akGTYIl~kDlDTIsrLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~elkk~~~~f~~qleELeEhv~lCf~tI  360 (367)
                      .||...+.+.|+.|.+.|.+|++=|+.    ++|.++. ++...+++.++||.+..+.+.+=|+=||.+|.-=|+.|
T Consensus       307 ~kgs~gLLkEl~~ve~~vr~L~el~d~----~~~p~~~-e~~~ev~~~V~EL~~~~~~L~~GLdpLerqVre~Fh~I  378 (389)
T PF05633_consen  307 RKGSCGLLKELQQVEASVRELHELIDS----FQFPLEE-EKEEEVREAVEELARVCEALSQGLDPLERQVREVFHRI  378 (389)
T ss_pred             ccCcchHHHHHHHHHHHHHHHHHHHHh----ccCCcch-hHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            567889999999999999999866664    3455544 33457889999999999999999999999999888865

Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development [, ].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	367
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 1e-06
 Identities = 48/315 (15%), Positives = 86/315 (27%), Gaps = 90/315 (28%)

Query: 45  LSIQTTSYHEILSRIRILDPHYRNHDQNQVEQQVEEINEDKDPDQLLLSQVLRPNRESVK 104
                  Y +ILS     D    N D   V+   + I   ++ D +++S     +     
Sbjct: 11  TGEHQYQYKDILSVF--EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS----KDAV--- 61

Query: 105 EALRLVKVNSLSDLFSTSFDHSEKTTNLCLQLLKSLFCIRTLYAPVCELLD-NFPLDHHS 163
                        LF T     E                  +   V E+L  N+      
Sbjct: 62  SGTLR--------LFWTLLSKQE----------------EMVQKFVEEVLRINYKFLMSP 97

Query: 164 VTQSQCDNAFEVFLQFDSLHNPFHSPDSRKFHEMHRCFSDLKQKLDKNLQKSRSRVCFLR 223
           + +++      +   +    +  ++ D++ F + +        KL + L + R       
Sbjct: 98  I-KTEQRQPSMMTRMYIEQRDRLYN-DNQVFAKYNVSRLQPYLKLRQALLELRP------ 149

Query: 224 YATAGSSVCIIGTAVGVTIATVGVATHAIFAIFAGPLCTACFPCALTKKELANAAQLDAA 283
                 +V I G   G                 +G            K  +A    L   
Sbjct: 150 ----AKNVLIDGVL-G-----------------SG------------KTWVALDVCLSYK 175

Query: 284 RK-----GAYVLN--KCLDTIDRL--VARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQ 334
            +       + LN   C      L  + +L   I  D             K  I  +  +
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI--DPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 335 LR---KNQPNFASLL 346
           LR   K++P    LL
Sbjct: 234 LRRLLKSKPYENCLL 248

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 3e-05
 Identities = 72/442 (16%), Positives = 130/442 (29%), Gaps = 135/442 (30%)

Query: 18  GAAGNST---DGSPSSSVQQSPTFNLTQAYLSI-QTTSYHEILSRIRILDPHYRNHDQNQ 73
             +G +    D   S  VQ    F +   +L++    S   +L  ++ L       D N 
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKI--FWLNLKNCNSPETVLEMLQKL---LYQIDPNW 213

Query: 74  VEQQ------VEEINEDKDPDQLLLSQVLRPNRESVKEALRLVKVNSLSDLFST----SF 123
             +          I+  +   + LL      N       L LV    L ++ +     +F
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN------CL-LV----LLNVQNAKAWNAF 262

Query: 124 DHSEKTTNLCLQLLKSLFCIRTLYAPVCELLDN-----FPLDHHSVTQSQCDNAFEVFLQ 178
           + S      C ++L     + T +  V + L         LDHHS+T +  D    + L+
Sbjct: 263 NLS------C-KIL-----LTTRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLK 309

Query: 179 F-----DSL------HNPFH-SPDSRKFHEMHRCFSDLKQ----KLDKNLQKSRS----- 217
           +       L       NP   S  +    +    + + K     KL   ++ S +     
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 218 --RVCFLRYATAGSSVCIIGTAVGVTIATVGV--------ATHAIFAIFAGPLCTACFPC 267
             R  F R +       +   +  +    + +            +             P 
Sbjct: 370 EYRKMFDRLS-------VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422

Query: 268 ALT----------KKELANAAQLDAARKGAYVLNKCLDTIDRLVAR------------LC 305
             T          K +L N   L  +    Y + K  D+ D +               L 
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482

Query: 306 TAIEGDK-QLVR---LGLG--GGKEKH---------SIQEVVKQLRK-------NQPNFA 343
                ++  L R   L       K +H         SI   ++QL+        N P + 
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542

Query: 344 SLLKDLEEHICLCFRPSFGQGL 365
            L+  + +     F P   + L
Sbjct: 543 RLVNAILD-----FLPKIEENL 559

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00