Citrus Sinensis ID: 017736

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------
Protein Sequence
MDTVRTTARHVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPFKRRKVQAPEVMPSISLPAKRKERSLSSLVVSTPKVPQHTGLTGKRTKGSTRKAAALRGCGFMLEDKKESSIEDHPMSSSSPDSLNKNAQNRRQESYKAEPSSEQGPNKVGEITEAKADLWTPLNCLVEAANRTKSSKSNSQGPSLAKTDLHNFPDSEVFMPETKVKVELPNSPGGEICSSKTKMKEHGLKTKYQNDKNGIGLHPGPMKRRRRAAAKKREVGTEESCAAAQAMLDAAGAKYKRRNTPIWFSLVASEDQKGDGSLPQISTCYLRIK
Secondary Structure (PSIPRED)
ccccccccccEEEEcccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHcccHHHHHcccccccccccccHHHHHccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccHHHHHHHHHHHcccccccccHHHHHcccccccccccccccEEEEEccccccccccccccccccEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHEEEEEHHHHccccccHHcccHHHcHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEccccHHHccccccHHHHHHHHccHHHHHccccccccccccccHccccccccEEcccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcHHHHHHHHHccccccccccccccHcHcccccccccccccccEEEccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccHHHHHHccccccEEEEEEEccccccccccccccccEEEEc
Coil and Loop (DISEMBL)
MDTVRTTARHVVKVKRETLeacmtcplcnslLREATTISLCLHTFCRKCIYeklsdeeadccpvcnidlgclpveklrpdhnlqDIRAkifpfkrrkvqapevmpsislpakrkerslsslvvstpkvpqhtgltgkrtkgstrKAAALRGCgfmledkkessiedhpmsssspdslnknaqnrrqesykaepsseqgpnkvgeiteakadlwtplnCLVEAAnrtkssksnsqgpslaktdlhnfpdsevfmpetkvkvelpnspggeicssktkmkehglktkyqndkngiglhpgpmKRRRRAAAKKREVGTEESCAAAQAMLDAAGakykrrntpiWFSLVAsedqkgdgslpqistcylrik
Flexible Loop (DISEMBL)
mdtvrttarhvvkvkretleacmtcpLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKifpfkrrkvqapevmpsislpakrkerslsslvvstpkvpqhtgltgkrtkgstrkaaALRGCGFMledkkessiedhpmsssspdslnkNAQNRRQEsykaepsseqgpnKVGEITEAKADLWTPLNCLVEAANrtkssksnsqgpslaktDLHNFPDSEVFMPETKVkvelpnspggeicssktkmkehglktkyqndkngiglhpgpmkRRRRAAAKkrevgteescAAAQAMLDAAGAKYKRRNTPIWFSLvasedqkgdgslpqistcylrik
Low Complexity Region (SEG)
MDTVRTTARHVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPFKRRKVQAPEVMPSISLPAKRKERSLSSLVVSTPKVPQHTGLTGKRTKGSTRKAAALRGCGFMLEDKKESSIEDHPMSSSSPDSLNKNAQNRRQESYKAEPSSEQGPNKVGEITEAKADLWTPLNCLVEAANRTKSSKSNSQGPSLAKTDLHNFPDSEVFMPETKVKVELPNSPGGEICSSKTKMKEHGLKTKYQNDKNGIGLHPGPMkrrrraaakkrEVGTEESCaaaqamldaagaKYKRRNTPIWFSLVASEDQKGDGSLPQISTCYLRIK
Disordered region (IsUnstruct)
********RHVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPFK*****************************************************************************************************************AKADLWTPLNCLVE********************************************************************************************************LDAAGAKYKRRNTPIWFSLVA***************CY****
Disordered Region (DISOPRED)
**************KRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIF********************************************************************************************************************************************************************************************************************************************************IWFSLVASE*****G*LPQISTCYLRIK
Disordered Region (DISEMBL)
********RHVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPFKRRKVQAPEVMPSISLPA***********************************AALRGCGFMLEDK******************************************VGEITEAKADLWTPLNCLVEAAN**************AKTDLHNFPDSEVFMPETKVKVELPNSPGGEICSSKTKMKEHGLKTKYQNDKNGIGLHPGP********************AAAQAMLDAAGAKYKRRNTPIWFSLVASEDQKGDGSLPQISTCYLRIK
Disordered Region (DISPRO)
MDTVRTTARHVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPFKRRKV***********************************************************************************************************TEAKADLWTPLNCLVEAANR***********************************************************************************************************YKRRNTPIWFSLVASEDQKGDGSLPQISTCYLRIK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDTVRTTARHVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPFKRRKVQAPEVMPSISLPAKRKERSLSSLVVSTPKVPQHTGLTGKRTKGSTRKAAALRGCGFMLEDKKESSIEDHPMSSSSPDSLNKNAQNRRQESYKAEPSSEQGPNKVGEITEAKADLWTPLNCLVEAANRTKSSKSNSQGPSLAKTDLHNFPDSEVFMPETKVKVELPNSPGGEICSSKTKMKEHGLKTKYQNDKNGIGLHPGPMKRRRRAAAKKREVGTEESCAAAQAMLDAAGAKYKRRNTPIWFSLVASEDQKGDGSLPQISTCYLRIK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	367	2.2.26 [Sep-21-2011]
Q94AY3	420	E3 ubiquitin protein liga	yes	no	0.882	0.771	0.479	1e-78
Q9M9Y4	421	E3 ubiquitin protein liga	no	no	0.904	0.788	0.472	1e-71
Q9LS86	480	Probable E3 ubiquitin pro	no	no	0.220	0.168	0.481	8e-19
Q07G17	242	Polycomb group RING finge	yes	no	0.212	0.322	0.419	1e-09
Q4QR06	259	Polycomb group RING finge	N/A	no	0.239	0.339	0.408	1e-09
Q28H21	259	Polycomb group RING finge	no	no	0.239	0.339	0.408	1e-09
Q8BTQ0	241	Polycomb group RING finge	yes	no	0.212	0.323	0.407	4e-09
Q3KNV8	242	Polycomb group RING finge	yes	no	0.212	0.322	0.407	4e-09
Q2KJ29	242	Polycomb group RING finge	yes	no	0.212	0.322	0.407	5e-09
Q7ZYZ7	261	Polycomb group RING finge	yes	no	0.215	0.302	0.402	6e-09

>sp|Q94AY3|DRIP2_ARATH E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana GN=DRIP2 PE=1 SV=1

 Score =  293 bits (750), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 175/365 (47%), Positives = 225/365 (61%), Gaps = 41/365 (11%)

Query: 11  VVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG 70
           V KVKRET+ ACMTCPLC+ LLR+ATTIS CLHTFCRKCIYEK++++E + CPVC+IDLG
Sbjct: 6   VAKVKRETVVACMTCPLCDKLLRDATTISECLHTFCRKCIYEKITEDEIESCPVCDIDLG 65

Query: 71  CLPVEKLRPDHNLQDIRAKIFPFKRRKVQAPEVMPSISLPAKRKERSLSSLVVSTPKVPQ 130
             P+EKLRPDH LQD+RAK+FP KR+K +APEV+ SISLPAKRKERS+SSLVVSTP+V  
Sbjct: 66  GTPLEKLRPDHILQDLRAKLFPLKRKKERAPEVVSSISLPAKRKERSISSLVVSTPRVSA 125

Query: 131 HTGLTGKRTKGSTRKAAALRGCGFMLE---DKKESSIEDHPMSSSSPDSLNKNAQNRRQE 187
             G TGKRTK +TRK   +RG G   +    K+E   +DH  S+SSP++L K  QN+RQ 
Sbjct: 126 QAGTTGKRTKAATRK--DVRGSGSFTKRTVKKEEEFGDDHVESASSPETLKKFTQNKRQS 183

Query: 188 SYKAEPS---SEQGPNKVGEITEAKADLWTPLNCLVEAANRTKSSKSNSQGPSLAKTDLH 244
           SY A P+   S +    V E  ++K  LW PLN LV+ AN TK  KS             
Sbjct: 184 SY-ANPNQSLSNRRNKDVDEPWDSKLHLWKPLNFLVDVANGTKDPKS------------- 229

Query: 245 NFPDSEVFMPETKVKVELPNSPGGEICSSKTKMKEHGLKTKYQNDKNGIGLHPGPMKRRR 304
                           EL N+   ++  SKTK K+H  K K + + +  G  P   +   
Sbjct: 230 ----------------ELGNASHNDVQGSKTKTKDHKRKCKLEEEISNNG-DPTTSETAT 272

Query: 305 RAAAKKREVGTEESCAAAQAML--DAAGAKYKRRNTPIWFSLVASEDQKGDGSLPQISTC 362
               ++       +   ++  L   AA  K +RRN  +WFSLVAS +Q+G+ SLPQI   
Sbjct: 273 LKRTRRTRRKRSSTFGDSRIPLLPGAASLKQERRNGHVWFSLVASSNQEGEASLPQIPAN 332

Query: 363 YLRIK 367
           YLRI+
Sbjct: 333 YLRIR 337

E3 ubiquitin-protein ligase that acts as a negative regulator of the response to water stress. Mediates ubiquitination and subsequent proteasomal degradation of the drought-induced transcriptional activator DREB2A. Functionally redundant with DRIP1.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9M9Y4|DRIP1_ARATH E3 ubiquitin protein ligase DRIP1 OS=Arabidopsis thaliana GN=DRIP1 PE=1 SV=2

 Score =  270 bits (690), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 171/362 (47%), Positives = 220/362 (60%), Gaps = 30/362 (8%)

Query: 11  VVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG 70
           ++KVK+ET+ AC++C +C+++LR+ATTIS CLHTFCRKCIYEK++++E + CPVCNIDLG
Sbjct: 2   MIKVKKETMRACLSCSICDNILRDATTISECLHTFCRKCIYEKITEDEIETCPVCNIDLG 61

Query: 71  CLPVEKLRPDHNLQDIRAKIFPFKRRKVQAPEVMPSISLPAKRKERSLSSLVVSTPKVPQ 130
             P+EKLRPDHNLQD+RAKIF  KRRKV+AP +   +SLP KRKERS+SSLVVSTP V  
Sbjct: 62  STPLEKLRPDHNLQDLRAKIFALKRRKVKAPGI---VSLPGKRKERSISSLVVSTPMVSA 118

Query: 131 HTGLTGKRTKGSTRKAAALRGCGFMLEDKKESSIEDHPMSSSSPDSLNKNAQNRRQESYK 190
             G T +RTK  TRK             K+ESS ++   S+SSPD+LNK  QN+RQ    
Sbjct: 119 QAGTTRRRTKAPTRKELRNGSLAERTVKKEESSGDELLESTSSPDTLNKFTQNKRQSKKS 178

Query: 191 AEPSSEQGPNKVG-EITEAKADLWTPLNCLVEAANRTKSSKSNSQGPSLAKTDLHNFPDS 249
            + S     NK G E  ++K D W PLN LVE AN TK  KS++   S +K+        
Sbjct: 179 CKESISNKENKDGDEPWDSKMD-WKPLNFLVEVANGTKPLKSSASQGSGSKS-------- 229

Query: 250 EVFMPETKVKVELPNSPGGEICSSKTKMKEHGLKTKYQNDKNGIG---LHPGPMKRRRRA 306
                      E  N    +   SKTK K    K K ++DK+  G          +R R 
Sbjct: 230 -----------EHANVSRNQFQGSKTKTKNKKRKCKREDDKSNNGDPTTSETVTPKRMRT 278

Query: 307 AAKKREVGT-EESCAAAQAMLDAAGAKYKRRNTPIWFSLVASEDQKGDGSLPQISTCYLR 365
             +KR   T  +S    Q   D + AK +RRN P+WFSLVAS DQ+G  SLPQI   +LR
Sbjct: 279 TQRKRSATTLGDSRNLPQP--DESSAKQERRNGPVWFSLVASNDQEGGTSLPQIPANFLR 336

Query: 366 IK 367
           I+
Sbjct: 337 IR 338

E3 ubiquitin-protein ligase that acts as a negative regulator of the response to water stress. Mediates ubiquitination and subsequent proteasomal degradation of the drought-induced transcriptional activator DREB2A. Functionally redundant with DRIP2.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9LS86|DRIPH_ARATH Probable E3 ubiquitin protein ligase DRIPH OS=Arabidopsis thaliana GN=At3g23060 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 56/81 (69%)

Query: 11 VVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG 70
          + KV  + ++ C+ CP+C +  ++ATTIS CLHTFCR CI  K  +E  + CPVCN++LG
Sbjct: 2  LTKVLSKEVKPCLACPICTNPFKDATTISECLHTFCRSCIRNKFINERVNACPVCNVNLG 61

Query: 71 CLPVEKLRPDHNLQDIRAKIF 91
            P+EKLR D   QD++ KI+
Sbjct: 62 VFPLEKLRSDCTWQDLKLKIY 82

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q07G17|PCGF3_XENTR Polycomb group RING finger protein 3 OS=Xenopus tropicalis GN=pcgf3 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 3/81 (3%)

Query: 13 KVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG-C 71
          K+K   + A +TC LCN  L +ATT++ CLHTFCR C+ + L  EE + CP C I +   
Sbjct: 5  KIKLWDINAHITCRLCNGYLIDATTVTECLHTFCRSCLVKYL--EENNTCPTCRIVIHQS 62

Query: 72 LPVEKLRPDHNLQDIRAKIFP 92
           P++ +  D  +QDI  K+ P
Sbjct: 63 HPLQYIGHDRTMQDIVYKLVP 83

Component of Polycomb group (PcG) multiprotein complexes; the complex class is required to maintain the transcriptionally repressive state of some genes.

Xenopus tropicalis (taxid: 8364)

>sp|Q4QR06|PCGF1_XENLA Polycomb group RING finger protein 1 OS=Xenopus laevis GN=pcgf1 PE=2 SV=2

 Score = 64.3 bits (155), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 5/93 (5%)

Query: 1   MDTVRTTARHVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEAD 60
           MD +R     VVKVK + L   + C LC     +ATTI+ CLHTFC+ CI + L  + + 
Sbjct: 23  MDPLRN--EEVVKVKIKELNEHIVCYLCAGYFIDATTITECLHTFCKSCIVKYL--QTSK 78

Query: 61  CCPVCNIDLG-CLPVEKLRPDHNLQDIRAKIFP 92
            CP+CNI +    P+  L+ D  +QDI  K+ P
Sbjct: 79  YCPLCNIKIHETQPLLNLKLDRVMQDIVYKLVP 111

Component of Polycomb group (PcG) multiprotein complexes; the complex class is required to maintain the transcriptionally repressive state of some genes.

Xenopus laevis (taxid: 8355)

>sp|Q28H21|PCGF1_XENTR Polycomb group RING finger protein 1 OS=Xenopus tropicalis GN=pcgf1 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 5/93 (5%)

Query: 1   MDTVRTTARHVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEAD 60
           MD +R     VVKVK + L   + C LC     +ATTI+ CLHTFC+ CI + L  + + 
Sbjct: 23  MDPLRNEE--VVKVKIKELNEHIVCYLCAGYFIDATTITECLHTFCKSCIVKYL--QTSK 78

Query: 61  CCPVCNIDLG-CLPVEKLRPDHNLQDIRAKIFP 92
            CP+CNI +    P+  L+ D  +QDI  K+ P
Sbjct: 79  YCPLCNIKIHETQPLLNLKLDRVMQDIVYKLVP 111

Component of Polycomb group (PcG) multiprotein complexes; the complex class is required to maintain the transcriptionally repressive state of some genes.

Xenopus tropicalis (taxid: 8364)

>sp|Q8BTQ0|PCGF3_MOUSE Polycomb group RING finger protein 3 OS=Mus musculus GN=PcgF3 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 3/81 (3%)

Query: 13 KVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG-C 71
          K+K   + A +TC LC+  L +ATT++ CLHTFCR C+ + L  EE + CP C I +   
Sbjct: 5  KIKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYL--EENNTCPTCRIVIHQS 62

Query: 72 LPVEKLRPDHNLQDIRAKIFP 92
           P++ +  D  +QDI  K+ P
Sbjct: 63 HPLQYIGHDRTMQDIVYKLVP 83

Component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones; it mediates monoubiquitination of histone H2A 'Lys-119', rendering chromatin heritably changed in its expressibility.

Mus musculus (taxid: 10090)

>sp|Q3KNV8|PCGF3_HUMAN Polycomb group RING finger protein 3 OS=Homo sapiens GN=PCGF3 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 3/81 (3%)

Query: 13 KVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG-C 71
          K+K   + A +TC LC+  L +ATT++ CLHTFCR C+ + L  EE + CP C I +   
Sbjct: 5  KIKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYL--EENNTCPTCRIVIHQS 62

Query: 72 LPVEKLRPDHNLQDIRAKIFP 92
           P++ +  D  +QDI  K+ P
Sbjct: 63 HPLQYIGHDRTMQDIVYKLVP 83

Component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones; it mediates monoubiquitination of histone H2A 'Lys-119', rendering chromatin heritably changed in its expressibility.

Homo sapiens (taxid: 9606)

>sp|Q2KJ29|PCGF3_BOVIN Polycomb group RING finger protein 3 OS=Bos taurus GN=PCGF3 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 3/81 (3%)

Query: 13 KVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG-C 71
          K+K   + A +TC LC+  L +ATT++ CLHTFCR C+ + L  EE + CP C I +   
Sbjct: 5  KIKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYL--EENNTCPTCRIVIHQS 62

Query: 72 LPVEKLRPDHNLQDIRAKIFP 92
           P++ +  D  +QDI  K+ P
Sbjct: 63 HPLQYIGHDRTMQDIVYKLVP 83

Component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones; it mediates monoubiquitination of histone H2A 'Lys-119', rendering chromatin heritably changed in its expressibility.

Bos taurus (taxid: 9913)

>sp|Q7ZYZ7|PCGF1_DANRE Polycomb group RING finger protein 1 OS=Danio rerio GN=pcgf1 PE=3 SV=1

 Score = 62.0 bits (149), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 3/82 (3%)

Query: 12  VKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG- 70
           VK+K + L   + C LC     +ATTI+ CLHTFC+ CI + L  + +  CP+CNI +  
Sbjct: 32  VKIKIKDLNEHIVCYLCAGYFIDATTITECLHTFCKSCIVKYL--QTSKYCPMCNIKIHE 89

Query: 71  CLPVEKLRPDHNLQDIRAKIFP 92
             P+  L+ D  +QDI  K+ P
Sbjct: 90  TQPLLNLKLDRVMQDIVYKLVP 111

Component of Polycomb group (PcG) multiprotein complexes; the complex class is required to maintain the transcriptionally repressive state of some genes.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	367
147844369	662	hypothetical protein VITISV_006024 [Viti	0.975	0.540	0.669	1e-130
225453016	449	PREDICTED: E3 ubiquitin protein ligase D	0.975	0.797	0.672	1e-129
224123440	430	predicted protein [Populus trichocarpa]	0.945	0.806	0.684	1e-128
255580929	445	ring finger protein, putative [Ricinus c	0.975	0.804	0.683	1e-122
296087924	425	unnamed protein product [Vitis vinifera]	0.910	0.785	0.639	1e-118
356535179	450	PREDICTED: E3 ubiquitin protein ligase D	0.972	0.793	0.612	1e-116
356576708	433	PREDICTED: E3 ubiquitin protein ligase D	0.950	0.806	0.609	1e-113
449442949	451	PREDICTED: E3 ubiquitin protein ligase D	0.975	0.793	0.617	1e-109
224131246	406	predicted protein [Populus trichocarpa]	0.861	0.778	0.615	1e-104
225437241	430	PREDICTED: E3 ubiquitin protein ligase D	0.912	0.779	0.565	1e-103

>gi|147844369|emb|CAN82106.1| hypothetical protein VITISV_006024 [Vitis vinifera]

 Score =  469 bits (1207), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 245/366 (66%), Positives = 281/366 (76%), Gaps = 8/366 (2%)

Query: 10  HVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69
            VVKV+RET+ ACMTCPLCN LL+EATTISLCLHTFCRKCIYEKLSDEE DCCPVCNIDL
Sbjct: 4   QVVKVRRETIAACMTCPLCNKLLKEATTISLCLHTFCRKCIYEKLSDEEVDCCPVCNIDL 63

Query: 70  GCLPVEKLRPDHNLQDIRAKIFPFKRRKVQAPEVMPSISLPAKRKERSLSSLVVSTPKVP 129
           GC+PV+KLRPDHNLQDIRAKIFPFKRRK+  P+VMP I LP KRKERSLSSLVVSTP+V 
Sbjct: 64  GCVPVDKLRPDHNLQDIRAKIFPFKRRKISVPQVMPPIPLPVKRKERSLSSLVVSTPRVS 123

Query: 130 QHTGLTGKRTKGSTRKAAALRGCGFMLED---KKESSIEDHPMSSSSPDSLNKNAQNRRQ 186
             TGLTG+RTK   RK+ ALRG  F + +   K+E S+ED P SSSSP+S NK AQ ++Q
Sbjct: 124 MQTGLTGRRTKAVARKSTALRGSSFSIVEPIKKEEDSVEDCPESSSSPESRNKVAQTKKQ 183

Query: 187 ESYKAEPSSEQGPNKVGEIT----EAKADLWTPLNCLVEAANRTKSSKSNSQGPSLAKTD 242
            S  +E S +Q PNK  E      + K DLWTPLNCLVEAANRTKSSK NSQG SLAK++
Sbjct: 184 NSSISEASKDQKPNKDTENDADPWDGKVDLWTPLNCLVEAANRTKSSKFNSQGTSLAKSE 243

Query: 243 LHNFPDSEVFMPETKVKVELPNSPGGEICSSKTKMKEHGLKTKYQNDKNGIGLHPGPMKR 302
             N PDSEV+MP+TK K E  N+  GE+C  KTK+KEHG K K Q+DKNG  L PGP+KR
Sbjct: 244 PFNAPDSEVYMPKTKAKAEPLNAADGEVCIPKTKIKEHGHKIKVQDDKNGAALLPGPVKR 303

Query: 303 RR-RAAAKKREVGTEESCAAAQAMLDAAGAKYKRRNTPIWFSLVASEDQKGDGSLPQIST 361
           RR RA  +KR   + E C  AQ +L AAGAK  RRN PIWFSLVASE+Q G+G L +I  
Sbjct: 304 RRMRAVGRKRISASGEMCTPAQVVLSAAGAKRGRRNCPIWFSLVASENQGGNGPLSKIPA 363

Query: 362 CYLRIK 367
            YLR+K
Sbjct: 364 YYLRVK 369

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453016|ref|XP_002264002.1| PREDICTED: E3 ubiquitin protein ligase DRIP2-like [Vitis vinifera]

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 246/366 (67%), Positives = 280/366 (76%), Gaps = 8/366 (2%)

Query: 10  HVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69
            VVKV+RET+ ACMTCPLCN LL+EATTISLCLHTFCRKCIYEKLSDEE DCCPVCNIDL
Sbjct: 4   QVVKVRRETIAACMTCPLCNKLLKEATTISLCLHTFCRKCIYEKLSDEEVDCCPVCNIDL 63

Query: 70  GCLPVEKLRPDHNLQDIRAKIFPFKRRKVQAPEVMPSISLPAKRKERSLSSLVVSTPKVP 129
           GC+PV+KLRPDHNLQDIRAKIFPFKRRK   PEVMP I LP KRKERSLSSLVVSTP+V 
Sbjct: 64  GCVPVDKLRPDHNLQDIRAKIFPFKRRKTSVPEVMPPIPLPVKRKERSLSSLVVSTPRVS 123

Query: 130 QHTGLTGKRTKGSTRKAAALRGCGFMLED---KKESSIEDHPMSSSSPDSLNKNAQNRRQ 186
             TGLTG+RTK   RK+ ALRG  F + +   K+E S+ED P SSSSP+S NK AQ ++Q
Sbjct: 124 MQTGLTGRRTKAVARKSTALRGSSFSIVEPIKKEEDSVEDCPESSSSPESRNKVAQTKKQ 183

Query: 187 ESYKAEPSSEQGPNKVGEIT----EAKADLWTPLNCLVEAANRTKSSKSNSQGPSLAKTD 242
            S  +E S +Q PNK  E      + K DLWTPLNCLVEAANRTKSSK NSQG SLAK++
Sbjct: 184 NSSISEASKDQKPNKDTENDADPWDGKVDLWTPLNCLVEAANRTKSSKFNSQGTSLAKSE 243

Query: 243 LHNFPDSEVFMPETKVKVELPNSPGGEICSSKTKMKEHGLKTKYQNDKNGIGLHPGPMKR 302
             N PDSEV+MP+TK K E  N+  GE+C  KTK+KEHG K K Q+DKNG  L PGP+KR
Sbjct: 244 PFNAPDSEVYMPKTKAKAEPLNAADGEVCIPKTKIKEHGHKIKVQDDKNGAALLPGPVKR 303

Query: 303 RR-RAAAKKREVGTEESCAAAQAMLDAAGAKYKRRNTPIWFSLVASEDQKGDGSLPQIST 361
           RR RA  +KR   + E C  AQ +L AAGAK  RRN PIWFSLVASE+Q G+G L +I  
Sbjct: 304 RRMRAVGRKRISASGEMCTPAQVVLSAAGAKRGRRNCPIWFSLVASENQGGNGPLSKIPA 363

Query: 362 CYLRIK 367
            YLR+K
Sbjct: 364 YYLRVK 369

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123440|ref|XP_002319079.1| predicted protein [Populus trichocarpa] gi|222857455|gb|EEE95002.1| predicted protein [Populus trichocarpa]

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 247/361 (68%), Positives = 274/361 (75%), Gaps = 14/361 (3%)

Query: 8   ARHVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNI 67
           A   VKV+R+ LEACMTCPLCN LL+EATTISLCLH+FCRKCIYEKLSDEE DCCPVCNI
Sbjct: 2   AGQTVKVQRQVLEACMTCPLCNKLLKEATTISLCLHSFCRKCIYEKLSDEEVDCCPVCNI 61

Query: 68  DLGCLPVEKLRPDHNLQDIRAKIFPFKRRKVQAPEVMPSISLPAKRKERSLSSLVVSTPK 127
           DLGCLPVEKLRPDHNLQDIRAK+FPFKRRKV APE+MPSI+LPAKRKERSLSSLVVSTPK
Sbjct: 62  DLGCLPVEKLRPDHNLQDIRAKVFPFKRRKVNAPEIMPSIALPAKRKERSLSSLVVSTPK 121

Query: 128 VPQHTGLTGKRTKGSTRKAAALRGCGFMLED-KKESSIEDHPMSSSSPDSLNKNAQNRRQ 186
           VP   GLTG+R+K   RKAAALRGC F +E+ KKE S ED+PMS SSP S  K+ Q RR 
Sbjct: 122 VPIQNGLTGRRSKAGARKAAALRGCNFTVEESKKEDSAEDNPMSPSSPGSPVKSIQKRRL 181

Query: 187 ESYKAEPSSEQGPNKVGEITEAKADLWTPLNCLVEAANRTKSSKSNSQGPSLAKTDLHNF 246
           +                EI E KADLWTPLNCLVEAANRTKSSKS+SQG SL K+ + + 
Sbjct: 182 DDDV-------------EIIEGKADLWTPLNCLVEAANRTKSSKSHSQGLSLVKSGMLDD 228

Query: 247 PDSEVFMPETKVKVELPNSPGGEICSSKTKMKEHGLKTKYQNDKNGIGLHPGPMKRRRRA 306
           PD E  + ETK + E P     E+  SKTK KEHG     Q+DKNG    P  +KRRR  
Sbjct: 229 PDCEPHLYETKSRAESPGGHHNEVYMSKTKNKEHGQGIGVQDDKNGKNSLPISVKRRRLT 288

Query: 307 AAKKREVGTEESCAAAQAMLDAAGAKYKRRNTPIWFSLVASEDQKGDGSLPQISTCYLRI 366
           AA+KR   +E   A+AQAM+DAAGAK  RRN PIWFSLVASEDQK D SLPQISTCYLRI
Sbjct: 289 AARKRAALSEGLSASAQAMIDAAGAKSNRRNGPIWFSLVASEDQKEDASLPQISTCYLRI 348

Query: 367 K 367
           K
Sbjct: 349 K 349

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580929|ref|XP_002531283.1| ring finger protein, putative [Ricinus communis] gi|223529116|gb|EEF31096.1| ring finger protein, putative [Ricinus communis]

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 250/366 (68%), Positives = 279/366 (76%), Gaps = 8/366 (2%)

Query: 8   ARHVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNI 67
           A  VVKVKRE +EACMTCPLCN LLR+ATTISLCLHTFCRKCIYEKLSDEE DCCPVC+I
Sbjct: 2   AGQVVKVKREIIEACMTCPLCNKLLRDATTISLCLHTFCRKCIYEKLSDEEGDCCPVCDI 61

Query: 68  DLGCLPVEKLRPDHNLQDIRAKIFPFKRRKVQAPEVMPSISLPAKRKERSLSSLVVSTPK 127
           DLGCLPVEKLRPDHNLQDIRAKIFP KRRK++APEVMPSI+LPAKRKERSLSSLVVSTPK
Sbjct: 62  DLGCLPVEKLRPDHNLQDIRAKIFPLKRRKIRAPEVMPSIALPAKRKERSLSSLVVSTPK 121

Query: 128 VPQHTGLTGKRTKGSTRKAAALRGCGFMLED--KKESSIEDHPMSSSSPDSLNKNAQNRR 185
           VP  TG TG+RTK   RK   LR C F  ++  KKE S+EDHPMSSSSP+S     QN+R
Sbjct: 122 VPMQTGFTGRRTKAGARKLVPLR-CNFTADESNKKEDSLEDHPMSSSSPESPIGVVQNKR 180

Query: 186 QESYKAEPSSEQ----GPNKVGEITEAKADLWTPLNCLVEAANRTKSSKSNSQGPSLAKT 241
           Q+S   EP + Q          EI E KADLWTPLNCLVEAANR+KSSKSNSQGPSL K+
Sbjct: 181 QDSSVGEPPNTQRFKEDLEDDVEIIEGKADLWTPLNCLVEAANRSKSSKSNSQGPSLPKS 240

Query: 242 DLHNFPDSEVFMPETKVKVELPNSPGGEICSSKTKMKEHGLKTKYQNDKNGIGLHPGPMK 301
           +L + PD +  +P  K + E PN    E+   KTK KEHG  +K Q+DKNG  L    +K
Sbjct: 241 ELLSGPDGDSQLPGIKFRAESPNGHVSEVYMPKTKNKEHGPDSKVQDDKNGTDLLHASVK 300

Query: 302 RRRRAAAKKREVGTEESCAAAQAMLDAAGAKYKRRNTPIWFSLVASEDQKGDGSLPQIST 361
            RRR  A+KR   +EE  A+A+ MLDAAGAK  RRN PIWFSLVASEDQKGD SLPQIS 
Sbjct: 301 -RRRLTARKRAAMSEEFSASARVMLDAAGAKNNRRNCPIWFSLVASEDQKGDASLPQISA 359

Query: 362 CYLRIK 367
            YLRIK
Sbjct: 360 GYLRIK 365

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087924|emb|CBI35207.3| unnamed protein product [Vitis vinifera]

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/366 (63%), Positives = 264/366 (72%), Gaps = 32/366 (8%)

Query: 10  HVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69
            VVKV+RET+ ACMTCPLCN LL+EATTISLCLHTFCRKCIYEKLSDEE DCCPVCNIDL
Sbjct: 4   QVVKVRRETIAACMTCPLCNKLLKEATTISLCLHTFCRKCIYEKLSDEEVDCCPVCNIDL 63

Query: 70  GCLPVEKLRPDHNLQDIRAKIFPFKRRKVQAPEVMPSISLPAKRKERSLSSLVVSTPKVP 129
           GC+PV+KLRPDHNLQDIRAKIFPFKRRK   PEVMP I LP KRKERSLSSLVVSTP+V 
Sbjct: 64  GCVPVDKLRPDHNLQDIRAKIFPFKRRKTSVPEVMPPIPLPVKRKERSLSSLVVSTPRVS 123

Query: 130 QHTGLTGKRTKGSTRKAAALRGCGFMLED---KKESSIEDHPMSSSSPDSLNKNAQNRRQ 186
             TGLTG+RTK   RK+ ALRG  F + +   K+E S+ED P SSSSP+S NK AQ ++Q
Sbjct: 124 MQTGLTGRRTKAVARKSTALRGSSFSIVEPIKKEEDSVEDCPESSSSPESRNKVAQTKKQ 183

Query: 187 ESYKAEPSSEQGPNKVGEIT----EAKADLWTPLNCLVEAANRTKSSKSNSQGPSLAKTD 242
            S  +E S +Q PNK  E      + K DLWTPLNCLVEAANRTKSSK NSQG SLAK++
Sbjct: 184 NSSISEASKDQKPNKDTENDADPWDGKVDLWTPLNCLVEAANRTKSSKFNSQGTSLAKSE 243

Query: 243 LHNFPDSEVFMPETKVKVELPNSPGGEICSSKTKMKEHGLKTKYQNDKNGIGLHPGPMKR 302
             N PDSE                        TK+KEHG K K Q+DKNG  L PGP+KR
Sbjct: 244 PFNAPDSE------------------------TKIKEHGHKIKVQDDKNGAALLPGPVKR 279

Query: 303 RR-RAAAKKREVGTEESCAAAQAMLDAAGAKYKRRNTPIWFSLVASEDQKGDGSLPQIST 361
           RR RA  +KR   + E C  AQ +L AAGAK  RRN PIWFSLVASE+Q G+G L +I  
Sbjct: 280 RRMRAVGRKRISASGEMCTPAQVVLSAAGAKRGRRNCPIWFSLVASENQGGNGPLSKIPA 339

Query: 362 CYLRIK 367
            YLR+K
Sbjct: 340 YYLRVK 345

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535179|ref|XP_003536126.1| PREDICTED: E3 ubiquitin protein ligase DRIP2-like [Glycine max]

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/366 (61%), Positives = 263/366 (71%), Gaps = 9/366 (2%)

Query: 10  HVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69
            +VKVKR+TL  CMTCPLC++  ++ATTIS CLHTFCRKCIYEKLSDEE DCCPVCNIDL
Sbjct: 5   QLVKVKRDTLRPCMTCPLCHNFFKDATTISTCLHTFCRKCIYEKLSDEETDCCPVCNIDL 64

Query: 70  GCLPVEKLRPDHNLQDIRAKIFPFKRRKVQAPEVMPSISLPAKRKERSLSSLVVSTPKVP 129
           GCLPVEKLRPDHNL DIRAKIFPFKR+K++A EV+ SISLPAKRKERSLSSLVVS PKV 
Sbjct: 65  GCLPVEKLRPDHNLHDIRAKIFPFKRKKIKAQEVLSSISLPAKRKERSLSSLVVSAPKVS 124

Query: 130 QHTGLTGKRTKGSTRKAAALRGCGFMLED---KKESSIEDHPMSSSSPDSLNKNAQNRRQ 186
              G TGKRTK STRKAAALRGC F+L++   K++++ +D+ + S  PDS N  ++N  Q
Sbjct: 125 MQPGFTGKRTKNSTRKAAALRGCSFLLDESIKKEQANGDDNMVCSILPDSSNMTSENESQ 184

Query: 187 ESYKAEPSSEQGP-----NKVGEITEAKADLWTPLNCLVEAANRTKSSKSNSQGPSLAKT 241
           +S   EPS +  P     N V E TE K DLWTPLNCLVEAANRTKSS+SNSQ   LAK 
Sbjct: 185 DSSMPEPSKKHKPHEDTENNV-EHTEGKVDLWTPLNCLVEAANRTKSSRSNSQATPLAKL 243

Query: 242 DLHNFPDSEVFMPETKVKVELPNSPGGEICSSKTKMKEHGLKTKYQNDKNGIGLHPGPMK 301
           +    P       ET  K +LP S   E+   K+K K+ G KT + +DK+   L  GP K
Sbjct: 244 ESPTTPHGGQDTSETTTKTDLPASAKSELNIPKSKNKDTGHKTIFGDDKDANSLPSGPGK 303

Query: 302 RRRRAAAKKREVGTEESCAAAQAMLDAAGAKYKRRNTPIWFSLVASEDQKGDGSLPQIST 361
           RRR   A ++ V   E  A++ A LD  G K  R+N+PIWFSLVASEDQKGD  LPQIS 
Sbjct: 304 RRRLRPAGQKRVAASEMSASSPAPLDTTGGKCNRKNSPIWFSLVASEDQKGDVPLPQISA 363

Query: 362 CYLRIK 367
           CYLRIK
Sbjct: 364 CYLRIK 369

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576708|ref|XP_003556472.1| PREDICTED: E3 ubiquitin protein ligase DRIP2-like [Glycine max]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/364 (60%), Positives = 256/364 (70%), Gaps = 15/364 (4%)

Query: 6   TTARHVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVC 65
            ++  VVKVKR+TL  CMTCPLC+   ++ATTISLCLHTFCRKCIYEKLSDEE DCCPVC
Sbjct: 2   VSSSQVVKVKRDTLRPCMTCPLCHKFFKDATTISLCLHTFCRKCIYEKLSDEEMDCCPVC 61

Query: 66  NIDLGCLPVEKLRPDHNLQDIRAKIFPFKRRKVQAPEVMPSISLPAKRKERSLSSLVVST 125
           +IDLGCLPVEKLRPDHNL DIRAKIFPFKR+K++A EV+ SISLPAKRKERSLSSLVVS 
Sbjct: 62  HIDLGCLPVEKLRPDHNLHDIRAKIFPFKRKKIKAQEVLSSISLPAKRKERSLSSLVVSA 121

Query: 126 PKVPQHTGLTGKRTKGSTRKAAALRGCGFMLED--KKESSIEDHPMSSSSPDSLNKNAQN 183
           PKV    G TGKRTK STRKAAALRGC F+L++  KKE +  D  M S  P         
Sbjct: 122 PKVSMQPGFTGKRTKNSTRKAAALRGCSFLLDESIKKEQTNGDDNMDSPMP--------- 172

Query: 184 RRQESYKAEPSSEQGPNKVGEITEAKADLWTPLNCLVEAANRTKSSKSNSQGPSLAKTDL 243
             + S K +P  E   N V + TE K DLWTPLNCLVEAANRTKSS+SNSQ   LAK + 
Sbjct: 173 --EHSKKHKP-HEDTENSV-QHTEGKVDLWTPLNCLVEAANRTKSSRSNSQATPLAKLES 228

Query: 244 HNFPDSEVFMPETKVKVELPNSPGGEICSSKTKMKEHGLKTKYQNDKNGIGLHPGPMKRR 303
              P       ET  K +LP S   E+   K+K K+ GLK  + +DK+   L  GP+KRR
Sbjct: 229 PTTPHGGQDASETTTKTDLPASAQSELNIPKSKNKDTGLKPIFGDDKDANSLPSGPVKRR 288

Query: 304 RRAAAKKREVGTEESCAAAQAMLDAAGAKYKRRNTPIWFSLVASEDQKGDGSLPQISTCY 363
           R   A ++ V   E  A++ A LDA G K  R+N+PIWFSLVASEDQKGD  LPQIS CY
Sbjct: 289 RLRPAGQKRVAASEMSASSPAPLDATGGKCNRKNSPIWFSLVASEDQKGDFPLPQISACY 348

Query: 364 LRIK 367
           LRIK
Sbjct: 349 LRIK 352

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442949|ref|XP_004139243.1| PREDICTED: E3 ubiquitin protein ligase DRIP2-like [Cucumis sativus] gi|449483021|ref|XP_004156472.1| PREDICTED: E3 ubiquitin protein ligase DRIP2-like [Cucumis sativus]

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 229/371 (61%), Positives = 262/371 (70%), Gaps = 13/371 (3%)

Query: 8   ARHVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNI 67
           A  VV+VKRE LEACMTCPLCN LL+EATTISLCLHTFCRKCIYEKLSD+E DCCPVC+I
Sbjct: 2   AGQVVRVKREILEACMTCPLCNKLLKEATTISLCLHTFCRKCIYEKLSDDEVDCCPVCDI 61

Query: 68  DLGCLPVEKLRPDHNLQDIRAKIFPFKRRKVQAPEVMPSISLPAKRKERSLSSLVVSTPK 127
           DLGCLPVEKLRPDHNLQDIRAKIFP KRRK+ APE+ P  SLP KRKERSLSSLVV+TPK
Sbjct: 62  DLGCLPVEKLRPDHNLQDIRAKIFPLKRRKICAPEISPLASLPVKRKERSLSSLVVNTPK 121

Query: 128 VP-QHTGLTGKRTKGSTRKAAALRGCGFMLED---KKESSIEDHPMSSSSPDSL-NKNAQ 182
           V  Q  GLTG+R+K   R AAALR C F  E+   K+E S EDH  SSSS D L N   +
Sbjct: 122 VSMQSGGLTGRRSKNVGRTAAALRRCNFGTEEPLKKEEDSGEDHTTSSSSSDYLKNVRFR 181

Query: 183 NRRQESYKAEPSS----EQGPNKVGEITEAKADLWTPLNCLVEAANRTKSSKSNSQGPSL 238
            RRQ+S   EPS+    E   N V E  E KADLWTPLNCLVEAANRTKS+K N QG S+
Sbjct: 182 QRRQDSSMPEPSNSLRHEHLKNNV-EAVEGKADLWTPLNCLVEAANRTKSTKLNFQGSSM 240

Query: 239 AKTDLHNFPDSEVFMPETKVKVELPNSPGGEICSSKTKMKEHGLKTKYQ-NDKNGIGLHP 297
           AK +  N  D +V   ETK K     +P   +   K + KEHG   K + N  NG    P
Sbjct: 241 AKLEPSNVADGDVDAEETKEKALSLGAPNYGLFMPKARNKEHGSNPKAKDNHNNGTASLP 300

Query: 298 GPMKRRR-RAAAKKREVGTEESCAAAQAMLDAAGAKYKRRNTPIWFSLVASEDQKGDGSL 356
             MKR+R RA A+ +   + E  + AQ +LDA+ AK  RRN+PIWF+L+ASED+KG   L
Sbjct: 301 ETMKRKRLRATARNKAAASAELSSPAQLVLDASAAKC-RRNSPIWFTLIASEDRKGGFPL 359

Query: 357 PQISTCYLRIK 367
           PQIST YLRIK
Sbjct: 360 PQISTPYLRIK 370

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131246|ref|XP_002328491.1| predicted protein [Populus trichocarpa] gi|222838206|gb|EEE76571.1| predicted protein [Populus trichocarpa]

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 224/364 (61%), Positives = 256/364 (70%), Gaps = 48/364 (13%)

Query: 10  HVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69
            +VKVKRE LEACMTCPLCN LL+EATTI  CLHTFCRKCIYEKLSDEE DCCPVCN++L
Sbjct: 4   QIVKVKREILEACMTCPLCNKLLKEATTIFSCLHTFCRKCIYEKLSDEEVDCCPVCNMNL 63

Query: 70  GCLPVEKLRPDHNLQDIRAKIFPFKRRKVQAPEVMPSISLPAKRKERSLSSLVVSTPKVP 129
           GCLPV+KLR DHNLQDIRAKIFPFKRRKV+APE++PSI+LPAKRKERSLSSLVVST KVP
Sbjct: 64  GCLPVDKLRADHNLQDIRAKIFPFKRRKVKAPEIIPSIALPAKRKERSLSSLVVSTSKVP 123

Query: 130 QHTGLTGKRTKGSTRKAAALRGCGFMLED-KKESSIEDHPMSSSSPDSLNKNAQNRRQES 188
             TGLTG+R+K   RKAAALRGC F +E+ K E S +D+    SSP S  K+ Q RR +S
Sbjct: 124 IQTGLTGRRSKAGARKAAALRGCSFTVEESKNEDSAKDN---LSSPGSPVKSIQKRRLDS 180

Query: 189 YKAEPSSEQGPNKVGE-----ITEAKADLWTPLNCLVEAANRTKSSKSNSQGPSLAKTDL 243
             AEPS+EQ PN  GE     + E KADLWTPLNCLVEAANRTKSS              
Sbjct: 181 SVAEPSTEQRPNDDGEDDDVQMIEGKADLWTPLNCLVEAANRTKSS-------------- 226

Query: 244 HNFPDSEVFMPETKVKVELPNSPGGEICSSKTKMKEHGLKTKYQNDKNGIGLHPGPMKRR 303
                ++++M +TK                     EHG   +  +DKNG    P  +KRR
Sbjct: 227 -----NDIYMAKTK--------------------NEHGQGIRVLDDKNGTNSLPVSVKRR 261

Query: 304 RRAAAKKREVGTEESCAAAQAMLDAAGAKYKRRNTPIWFSLVASEDQKGDGSLPQISTCY 363
           R  AA+KR   +E   A+AQAM+DAA AK  RRN PIWFSLVASEDQK D SLPQIS CY
Sbjct: 262 RLTAAQKRAAMSEGLGASAQAMVDAAAAKSNRRNGPIWFSLVASEDQKRDASLPQISACY 321

Query: 364 LRIK 367
           LRI+
Sbjct: 322 LRIQ 325

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437241|ref|XP_002275598.1| PREDICTED: E3 ubiquitin protein ligase DRIP2 [Vitis vinifera] gi|297735508|emb|CBI17948.3| unnamed protein product [Vitis vinifera]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/373 (56%), Positives = 249/373 (66%), Gaps = 38/373 (10%)

Query: 8   ARHVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNI 67
           +  VVKV+RET+ ACMTCPLCN LLR+ATTIS CLHTFCRKCIY K+SDEE +CCP+CN 
Sbjct: 2   SNQVVKVRRETIAACMTCPLCNKLLRDATTISECLHTFCRKCIYNKISDEELECCPICNT 61

Query: 68  DLGCLPVEKLRPDHNLQDIRAKIFPFKRRKVQAPEVMPSISLPAKRKERSLSSLVVSTPK 127
           DLGC+P+EKLRPDHNLQD+RAKIFPFKRRKV+APEV+  ++LP KRKERSLSSLVVSTP+
Sbjct: 62  DLGCVPLEKLRPDHNLQDVRAKIFPFKRRKVKAPEVVLPVTLPVKRKERSLSSLVVSTPR 121

Query: 128 VPQHTGLTGKRTKGSTRKAAALRGCGFMLE---DKKESSIEDHPMSSSSPDSLNKNAQNR 184
           V   T +TG+RTK   RKA ALRG GF +E    K+E S+ + P SSSSP++LNK  QN 
Sbjct: 122 VSTQTTMTGRRTKSVARKATALRGSGFSIEKLIKKEEDSVGERPASSSSPETLNKFTQNI 181

Query: 185 RQESYKAEPSSEQGPNKV----GEITEAKADLWTPLNCLVEAANRTKSSKSNSQGPSLAK 240
           RQ S  AEPS    PNK      E  E K DLW PLNCLVE ANRTKS K NSQG ++  
Sbjct: 182 RQNSPSAEPSIHSTPNKETENGAESWEGKFDLWKPLNCLVEVANRTKSLKFNSQGSAVKS 241

Query: 241 TDLHNFPDSEVFMPETKVKVELPNSPGGEICSSKTKMKEHGLKTKYQNDKNGIGLHP--- 297
             +H                     P GE    KTK+KEHG K+K Q++K  I   P   
Sbjct: 242 EPMH--------------------VPDGESQVRKTKVKEHGRKSKVQDEK--ISTTPVSA 279

Query: 298 ---GPMKRRRRAAAKKREVGTEESCAAAQAMLDAAGAKYKRRNTPIWFSLVASEDQKGDG 354
               P K  R    +    G  E   + QA+L+A    +KRR   IWFSLVASEDQ+GD 
Sbjct: 280 ESVKPKKLCRVRRRRAAAFG--ELGISPQAVLNAVN-NHKRRTGSIWFSLVASEDQEGDA 336

Query: 355 SLPQISTCYLRIK 367
           SLPQIS+ +LRIK
Sbjct: 337 SLPQISSNFLRIK 349

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	367
TAIR|locus:2033103	421	DRIP1 "DREB2A-interacting prot	0.659	0.574	0.537	2e-73
TAIR|locus:2064392	420	DRIP2 "DREB2A-interacting prot	0.732	0.640	0.533	2.8e-66
TAIR|locus:2094608	480	AT3G23060 [Arabidopsis thalian	0.321	0.245	0.408	1.9e-28
UNIPROTKB|I3LAF0	203	PCGF3 "Uncharacterized protein	0.212	0.384	0.407	4.5e-15
UNIPROTKB|F1NLA3	245	PCGF3 "Uncharacterized protein	0.212	0.318	0.419	9.6e-13
UNIPROTKB|Q5T8Z4	150	BMI1 "Polycomb complex protein	0.212	0.52	0.370	1.2e-12
MGI|MGI:1916837	241	Pcgf3 "polycomb group ring fin	0.212	0.323	0.407	3.6e-12
UNIPROTKB|Q5T8Z6	105	BMI1 "Polycomb complex protein	0.212	0.742	0.370	3.9e-12
UNIPROTKB|Q3KNV8	242	PCGF3 "Polycomb group RING fin	0.212	0.322	0.407	5e-12
UNIPROTKB|Q2KJ29	242	PCGF3 "Polycomb group RING fin	0.212	0.322	0.407	6.3e-12

TAIR|locus:2033103 DRIP1 "DREB2A-interacting protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 631 (227.2 bits), Expect = 2.0e-73, Sum P(2) = 2.0e-73
 Identities = 136/253 (53%), Positives = 175/253 (69%)

Query:    11 VVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG 70
             ++KVK+ET+ AC++C +C+++LR+ATTIS CLHTFCRKCIYEK++++E + CPVCNIDLG
Sbjct:     2 MIKVKKETMRACLSCSICDNILRDATTISECLHTFCRKCIYEKITEDEIETCPVCNIDLG 61

Query:    71 CLPVEKLRPDHNLQDIRAKIFPFKRRKVQAPEVMPSISLPAKRKERSLSSLVVSTPKVPQ 130
               P+EKLRPDHNLQD+RAKIF  KRRKV+AP +   +SLP KRKERS+SSLVVSTP V  
Sbjct:    62 STPLEKLRPDHNLQDLRAKIFALKRRKVKAPGI---VSLPGKRKERSISSLVVSTPMVSA 118

Query:   131 HTGLTGKRTKGSTRKAAALRGCGFMLED--KKESSIEDHPM-SSSSPDSLNKNAQNRRQE 187
               G T +RTK  TRK   LR  G + E   KKE S  D  + S+SSPD+LNK  QN+RQ 
Sbjct:   119 QAGTTRRRTKAPTRKE--LRN-GSLAERTVKKEESSGDELLESTSSPDTLNKFTQNKRQS 175

Query:   188 SYKAEPSSEQGPNKVG-EITEAKADLWTPLNCLVEAANRTKSSKSNSQGPSLAKTDLHNF 246
                 + S     NK G E  ++K D W PLN LVE AN TK  KS++   S +K++  N 
Sbjct:   176 KKSCKESISNKENKDGDEPWDSKMD-WKPLNFLVEVANGTKPLKSSASQGSGSKSEHANV 234

Query:   247 PDSEVFMPETKVK 259
               ++    +TK K
Sbjct:   235 SRNQFQGSKTKTK 247

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=IGI

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0051865 "protein autoubiquitination" evidence=IDA

TAIR|locus:2064392 DRIP2 "DREB2A-interacting protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
 Identities = 150/281 (53%), Positives = 189/281 (67%)

Query:    11 VVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG 70
             V KVKRET+ ACMTCPLC+ LLR+ATTIS CLHTFCRKCIYEK++++E + CPVC+IDLG
Sbjct:     6 VAKVKRETVVACMTCPLCDKLLRDATTISECLHTFCRKCIYEKITEDEIESCPVCDIDLG 65

Query:    71 CLPVEKLRPDHNLQDIRAKIFPFKRRKVQAPEVMPSISLPAKRKERSLSSLVVSTPKVPQ 130
               P+EKLRPDH LQD+RAK+FP KR+K +APEV+ SISLPAKRKERS+SSLVVSTP+V  
Sbjct:    66 GTPLEKLRPDHILQDLRAKLFPLKRKKERAPEVVSSISLPAKRKERSISSLVVSTPRVSA 125

Query:   131 HTGLTGKRTKGSTRKAAALRGCGFMLED--KKESSI-EDHPMSSSSPDSLNKNAQNRRQE 187
               G TGKRTK +TRK   +RG G   +   KKE    +DH  S+SSP++L K  QN+RQ 
Sbjct:   126 QAGTTGKRTKAATRKD--VRGSGSFTKRTVKKEEEFGDDHVESASSPETLKKFTQNKRQS 183

Query:   188 SYKAEP--SSEQGPNK-VGEITEAKADLWTPLNCLVEAANRTKSSKSNSQGPSLAKTDLH 244
             SY A P  S     NK V E  ++K  LW PLN LV+ AN TK  KS     S    D+ 
Sbjct:   184 SY-ANPNQSLSNRRNKDVDEPWDSKLHLWKPLNFLVDVANGTKDPKSELGNAS--HNDVQ 240

Query:   245 NFPDSEVFMPETKVKVELPNSPGGEICSSKTKMKEHGLKTK 285
                 ++    + K K+E   S  G+  +S+T   +   +T+
Sbjct:   241 G-SKTKTKDHKRKCKLEEEISNNGDPTTSETATLKRTRRTR 280

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=IGI

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0051865 "protein autoubiquitination" evidence=IDA

TAIR|locus:2094608 AT3G23060 [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.9e-28, Sum P(2) = 1.9e-28
 Identities = 49/120 (40%), Positives = 76/120 (63%)

Query:    11 VVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG 70
             + KV  + ++ C+ CP+C +  ++ATTIS CLHTFCR CI  K  +E  + CPVCN++LG
Sbjct:     2 LTKVLSKEVKPCLACPICTNPFKDATTISECLHTFCRSCIRNKFINERVNACPVCNVNLG 61

Query:    71 CLPVEKLRPDHNLQDIRAKIFP--FKRRKVQAPEVMPSISLPAKRKERSLSSLVVSTPKV 128
               P+EKLR D   QD++ KI+    +  K   P+ + +    +K+K +S +SL VS+ +V
Sbjct:    62 VFPLEKLRSDCTWQDLKLKIYRAMMESLKKAGPKTVAASVKSSKKKRKSRTSLRVSSSRV 121

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

UNIPROTKB|I3LAF0 PCGF3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 160 (61.4 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
 Identities = 33/81 (40%), Positives = 49/81 (60%)

Query:    13 KVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG-C 71
             K+K   + A +TC LC+  L +ATT++ CLHTFCR C+ + L  EE + CP C I +   
Sbjct:     5 KIKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYL--EENNTCPTCRIVIHQS 62

Query:    72 LPVEKLRPDHNLQDIRAKIFP 92
              P++ +  D  +QDI  K+ P
Sbjct:    63 HPLQYIGHDRTMQDIVYKLVP 83

GO:0031519 "PcG protein complex" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1NLA3 PCGF3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 165 (63.1 bits), Expect = 9.6e-13, Sum P(2) = 9.6e-13
 Identities = 34/81 (41%), Positives = 49/81 (60%)

Query:    13 KVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG-C 71
             K+K   + A +TC LCN  L +ATT++ CLHTFCR C+ + L  EE + CP C I +   
Sbjct:     8 KIKLWDINAHITCRLCNGYLIDATTVTECLHTFCRSCLVKYL--EENNTCPTCRIVIHQS 65

Query:    72 LPVEKLRPDHNLQDIRAKIFP 92
              P++ +  D  +QDI  K+ P
Sbjct:    66 HPLQYIGHDRTMQDIVYKLVP 86

GO:0008270 "zinc ion binding" evidence=IEA

GO:0031519 "PcG protein complex" evidence=IEA

UNIPROTKB|Q5T8Z4 BMI1 "Polycomb complex protein BMI-1" [Homo sapiens (taxid:9606)]

 Score = 142 (55.0 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
 Identities = 30/81 (37%), Positives = 44/81 (54%)

Query:    13 KVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG-C 71
             ++K   L   + C LC     +ATTI  CLH+FC+ CI   L  E +  CP+C++ +   
Sbjct:     6 RIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL--ETSKYCPICDVQVHKT 63

Query:    72 LPVEKLRPDHNLQDIRAKIFP 92
              P+  +R D  LQDI  K+ P
Sbjct:    64 RPLLNIRSDKTLQDIVYKLVP 84

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0006959 "humoral immune response" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0016573 "histone acetylation" evidence=IEA

GO:0016574 "histone ubiquitination" evidence=IEA

GO:0016604 "nuclear body" evidence=IEA

GO:0021903 "rostrocaudal neural tube patterning" evidence=IEA

GO:0030890 "positive regulation of B cell proliferation" evidence=IEA

GO:0031519 "PcG protein complex" evidence=IEA

GO:0033092 "positive regulation of immature T cell proliferation in thymus" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0048103 "somatic stem cell division" evidence=IEA

GO:0048704 "embryonic skeletal system morphogenesis" evidence=IEA

MGI|MGI:1916837 Pcgf3 "polycomb group ring finger 3" [Mus musculus (taxid:10090)]

 Score = 160 (61.4 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
 Identities = 33/81 (40%), Positives = 49/81 (60%)

Query:    13 KVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG-C 71
             K+K   + A +TC LC+  L +ATT++ CLHTFCR C+ + L  EE + CP C I +   
Sbjct:     5 KIKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYL--EENNTCPTCRIVIHQS 62

Query:    72 LPVEKLRPDHNLQDIRAKIFP 92
              P++ +  D  +QDI  K+ P
Sbjct:    63 HPLQYIGHDRTMQDIVYKLVP 83

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0031519 "PcG protein complex" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q5T8Z6 BMI1 "Polycomb complex protein BMI-1" [Homo sapiens (taxid:9606)]

 Score = 142 (55.0 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
 Identities = 30/81 (37%), Positives = 44/81 (54%)

Query:    13 KVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG-C 71
             ++K   L   + C LC     +ATTI  CLH+FC+ CI   L  E +  CP+C++ +   
Sbjct:     6 RIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL--ETSKYCPICDVQVHKT 63

Query:    72 LPVEKLRPDHNLQDIRAKIFP 92
              P+  +R D  LQDI  K+ P
Sbjct:    64 RPLLNIRSDKTLQDIVYKLVP 84

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0006959 "humoral immune response" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0016573 "histone acetylation" evidence=IEA

GO:0016574 "histone ubiquitination" evidence=IEA

GO:0016604 "nuclear body" evidence=IEA

GO:0021903 "rostrocaudal neural tube patterning" evidence=IEA

GO:0030890 "positive regulation of B cell proliferation" evidence=IEA

GO:0031519 "PcG protein complex" evidence=IEA

GO:0033092 "positive regulation of immature T cell proliferation in thymus" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0048103 "somatic stem cell division" evidence=IEA

GO:0048704 "embryonic skeletal system morphogenesis" evidence=IEA

UNIPROTKB|Q3KNV8 PCGF3 "Polycomb group RING finger protein 3" [Homo sapiens (taxid:9606)]

 Score = 160 (61.4 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
 Identities = 33/81 (40%), Positives = 49/81 (60%)

Query:    13 KVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG-C 71
             K+K   + A +TC LC+  L +ATT++ CLHTFCR C+ + L  EE + CP C I +   
Sbjct:     5 KIKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYL--EENNTCPTCRIVIHQS 62

Query:    72 LPVEKLRPDHNLQDIRAKIFP 92
              P++ +  D  +QDI  K+ P
Sbjct:    63 HPLQYIGHDRTMQDIVYKLVP 83

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0031519 "PcG protein complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q2KJ29 PCGF3 "Polycomb group RING finger protein 3" [Bos taurus (taxid:9913)]

 Score = 160 (61.4 bits), Expect = 6.3e-12, Sum P(2) = 6.3e-12
 Identities = 33/81 (40%), Positives = 49/81 (60%)

Query:    13 KVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG-C 71
             K+K   + A +TC LC+  L +ATT++ CLHTFCR C+ + L  EE + CP C I +   
Sbjct:     5 KIKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYL--EENNTCPTCRIVIHQS 62

Query:    72 LPVEKLRPDHNLQDIRAKIFP 92
              P++ +  D  +QDI  K+ P
Sbjct:    63 HPLQYIGHDRTMQDIVYKLVP 83

GO:0031519 "PcG protein complex" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00130413 hypothetical protein (430 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	367
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	4e-08
smart00184	40	smart00184, RING, Ring finger	8e-07
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	3e-06
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	4e-06
COG5222	427	COG5222, COG5222, Uncharacterized conserved protei	0.002

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 48.6 bits (116), Expect = 4e-08
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 24 TCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69
           CP+C    RE   +  C H FCR CI +K      + CP+C   +
Sbjct: 1  ECPICLEEFREPVVLLPCGHVFCRSCI-DKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 44.8 bits (106), Expect = 8e-07
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 25 CPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVC 65
          CP+C     +   I  C HTFCR CI  K  +   + CP+C
Sbjct: 1  CPICLEEYLKDPVILPCGHTFCRSCI-RKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 43.6 bits (103), Expect = 3e-06
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 24 TCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCN 66
           CP+C  LLR+   ++ C H FCR+CI   L  +    CP+C 
Sbjct: 4  ECPICLDLLRDPVVLTPCGHVFCRECILRYLKKK--SKCPICR 44

Length = 45

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 43.2 bits (102), Expect = 4e-06
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 25 CPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVC 65
          CP+C    ++  TI  C H FC KCI   L       CP+C
Sbjct: 1  CPICLEEPKDPVTILPCGHLFCSKCILSWLESGNV-TCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|227547 COG5222, COG5222, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 39.7 bits (92), Expect = 0.002
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 23  MTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHN 82
           + CPLC+ LLR       C HTFC +CI   L D +   CP C+     L  + L PD +
Sbjct: 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFK-CPNCSRKDVLL--DGLTPDID 331

Query: 83  LQ 84
            +
Sbjct: 332 KK 333

Length = 427

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	367
KOG2660	331	consensus Locus-specific chromosome binding protei	99.54
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.2
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.19
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	99.14
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	99.1
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	99.09
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	99.05
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	98.99
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.93
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.86
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.85
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.83
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.79
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.79
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.63
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.6
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.58
PHA02929	238	N1R/p28-like protein; Provisional	98.57
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.57
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.54
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.5
PF14634	44	zf-RING_5: zinc-RING finger domain	98.36
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.36
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.33
PHA02926	242	zinc finger-like protein; Provisional	98.33
COG5222	427	Uncharacterized conserved protein, contains RING Z	98.3
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.22
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	98.21
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.2
KOG1002	791	consensus Nucleotide excision repair protein RAD16	98.16
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	98.11
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.99
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	97.9
COG5152	259	Uncharacterized conserved protein, contains RING a	97.73
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.72
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	97.67
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.59
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	97.46
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	97.45
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	97.42
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	97.13
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	97.08
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	96.9
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	96.88
KOG4367	699	consensus Predicted Zn-finger protein [Function un	96.32
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	96.0
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	95.85
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	95.79
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	95.71
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	95.67
KOG0825	1134	consensus PHD Zn-finger protein [General function	95.67
PF04641	260	Rtf2: Rtf2 RING-finger	95.65
KOG1001	674	consensus Helicase-like transcription factor HLTF/	95.63
COG5219	1525	Uncharacterized conserved protein, contains RING Z	95.62
KOG3039	303	consensus Uncharacterized conserved protein [Funct	95.47
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	95.12
KOG4739	233	consensus Uncharacterized protein involved in syna	95.07
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	95.04
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	94.97
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	94.95
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	94.95
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	94.9
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	94.88
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	94.67
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	94.46
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	94.16
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	94.12
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	94.06
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	93.89
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	93.87
KOG3039	303	consensus Uncharacterized conserved protein [Funct	93.76
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	93.14
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	93.09
KOG1941	518	consensus Acetylcholine receptor-associated protei	93.06
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	92.99
KOG3002	299	consensus Zn finger protein [General function pred	92.88
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	92.62
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	92.26
COG5175	480	MOT2 Transcriptional repressor [Transcription]	92.01
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	90.82
COG5236	493	Uncharacterized conserved protein, contains RING Z	90.37
PHA03096	284	p28-like protein; Provisional	89.95
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	89.78
KOG3579	352	consensus Predicted E3 ubiquitin ligase [Posttrans	89.59
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	88.74
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	88.36
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	88.05
KOG1812	384	consensus Predicted E3 ubiquitin ligase [Posttrans	86.83
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	86.18
KOG0298	1394	consensus DEAD box-containing helicase-like transc	85.59
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	84.87
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	84.64
KOG1815	444	consensus Predicted E3 ubiquitin ligase [Posttrans	84.17
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	83.16
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	81.95
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	81.42
PHA02825	162	LAP/PHD finger-like protein; Provisional	80.39

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=99.54  E-value=1.6e-15  Score=147.84  Aligned_cols=168  Identities=32%  Similarity=0.467  Sum_probs=119.9

Q ss_pred             hhhhhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCC-CCCCCCCChHHHHHHHHH
Q 017736           12 VKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCL-PVEKLRPDHNLQDIRAKI   90 (367)
Q Consensus        12 v~v~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~-~~~~lr~n~~L~~li~kl   90 (367)
                      ..+....+..+++|.+|..+|.|++++..|.||||+.||..++..  ...||.|...++.. +...++.|..|++|+.++
T Consensus         5 ~~vk~~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~--~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL   82 (331)
T KOG2660|consen    5 RRVKLTELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE--SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL   82 (331)
T ss_pred             hhhhhhhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH--hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence            457778899999999999999999999999999999999999976  67899999988754 578899999999999999


Q ss_pred             CCCchhcccCCCCCCCCCCchhhhcccccceeecCCCcccCCCCCCCccchhhhhhhhhhcCCCCcccccccccCCCCCC
Q 017736           91 FPFKRRKVQAPEVMPSISLPAKRKERSLSSLVVSTPKVPQHTGLTGKRTKGSTRKAAALRGCGFMLEDKKESSIEDHPMS  170 (367)
Q Consensus        91 fp~~~~k~~~~E~~~~v~~~~kRKerSLsSL~v~tP~vs~~~~~tgrRtk~~~r~aa~l~~~~~~~~~~~~~~~~~~~~~  170 (367)
                      +|...                +|..+.+..+..+.+.+..+.+.+|.+...              .++  +.-.+++.+.
T Consensus        83 VPgl~----------------erE~k~~rdFy~~~~~~d~~~~~~~~~~~~--------------~~~--ek~~~t~~~~  130 (331)
T KOG2660|consen   83 VPGLQ----------------EREMKRRRDFYKSRPLVDVPAGDTPERGHV--------------LGE--EKVPDTSDEI  130 (331)
T ss_pred             cchHH----------------HHHHHHHHHHHHhCCCcccCCCCCcccccc--------------cCc--ccCCCchhhh
Confidence            99865                344455556666666666667777651111              011  2223444456


Q ss_pred             CCCccccccccccccccccCCCCCCCCCCCCcccccccccccccccchhHhhhc
Q 017736          171 SSSPDSLNKNAQNRRQESYKAEPSSEQGPNKVGEITEAKADLWTPLNCLVEAAN  224 (367)
Q Consensus       171 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ve~a~  224 (367)
                      .|++...-.+.+++...+.+-         .-.|.+...-+||+  +++.-.|.
T Consensus       131 ~s~~l~~~~~~~~r~d~~~~~---------~~~e~~~~~k~l~~--~fvrcsa~  173 (331)
T KOG2660|consen  131 ASLSLEVEDFKQNRLDEQVSV---------GLDEGKDTLKDLVR--RFLRCSAA  173 (331)
T ss_pred             hccccchhhcccchhhhhhhc---------CCCccccccccccc--ceEeccHH
Confidence            677777777788887655431         11445556667773  44443333

>smart00504 Ubox Modified RING finger domain

Probab=99.20  E-value=1.5e-11  Score=92.54  Aligned_cols=62  Identities=21%  Similarity=0.327  Sum_probs=54.7

Q ss_pred             cccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHH
Q 017736           22 CMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAK   89 (367)
Q Consensus        22 ~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~k   89 (367)
                      +|.||||++++.+|+.+ +|||+||+.||.+|+..  ...||+|+..+   ...++.+|..+++.++.
T Consensus         1 ~~~Cpi~~~~~~~Pv~~-~~G~v~~~~~i~~~~~~--~~~cP~~~~~~---~~~~l~~~~~l~~~i~~   62 (63)
T smart00504        1 EFLCPISLEVMKDPVIL-PSGQTYERRAIEKWLLS--HGTDPVTGQPL---THEDLIPNLALKSAIQE   62 (63)
T ss_pred             CcCCcCCCCcCCCCEEC-CCCCEEeHHHHHHHHHH--CCCCCCCcCCC---ChhhceeCHHHHHHHHh
Confidence            47899999999999998 99999999999999976  35799999877   56778999999888764

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.19  E-value=9.8e-12  Score=87.95  Aligned_cols=40  Identities=33%  Similarity=0.991  Sum_probs=32.1

Q ss_pred             ccccccccccccccCCCCCcccHHHHHHHhhcCCC--Cccccc
Q 017736           25 CPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEA--DCCPVC   65 (367)
Q Consensus        25 CpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~--~~CPvC   65 (367)
                      ||||+++|.+||++ .|||+||..||.+++.....  ..||.|
T Consensus         1 CpiC~~~~~~Pv~l-~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSL-PCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE--SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCcccc-CCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            89999999999999 99999999999999987543  579987

>TIGR00599 rad18 DNA repair protein rad18

Probab=99.14  E-value=3.4e-11  Score=121.83  Aligned_cols=72  Identities=26%  Similarity=0.576  Sum_probs=62.9

Q ss_pred             hhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCC
Q 017736           15 KRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFP   92 (367)
Q Consensus        15 ~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp   92 (367)
                      ..+.|+..+.|+||+++|.+|+++ +|||+||..||..|+...  ..||+|+..+   ....++.|..|.+|++.|..
T Consensus        19 ~l~~Le~~l~C~IC~d~~~~Pvit-pCgH~FCs~CI~~~l~~~--~~CP~Cr~~~---~~~~Lr~N~~L~~iVe~~~~   90 (397)
T TIGR00599        19 SLYPLDTSLRCHICKDFFDVPVLT-SCSHTFCSLCIRRCLSNQ--PKCPLCRAED---QESKLRSNWLVSEIVESFKN   90 (397)
T ss_pred             cccccccccCCCcCchhhhCccCC-CCCCchhHHHHHHHHhCC--CCCCCCCCcc---ccccCccchHHHHHHHHHHH
Confidence            457789999999999999999988 999999999999999663  4699999877   44578999999999998854

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=99.10  E-value=6.1e-11  Score=93.11  Aligned_cols=68  Identities=21%  Similarity=0.330  Sum_probs=55.2

Q ss_pred             cccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCC
Q 017736           20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFP   92 (367)
Q Consensus        20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp   92 (367)
                      -+.|.||||+++|.+||.+ +|||+|++.||.+|+.. ....||.|+..+   ....+.+|..|+..|+.|..
T Consensus         2 P~~f~CpIt~~lM~dPVi~-~~G~tyer~~I~~~l~~-~~~~~P~t~~~l---~~~~l~pn~~Lk~~I~~~~~   69 (73)
T PF04564_consen    2 PDEFLCPITGELMRDPVIL-PSGHTYERSAIERWLEQ-NGGTDPFTRQPL---SESDLIPNRALKSAIEEWCA   69 (73)
T ss_dssp             SGGGB-TTTSSB-SSEEEE-TTSEEEEHHHHHHHHCT-TSSB-TTT-SB----SGGGSEE-HHHHHHHHHHHH
T ss_pred             CcccCCcCcCcHhhCceeC-CcCCEEcHHHHHHHHHc-CCCCCCCCCCcC---CcccceECHHHHHHHHHHHH
Confidence            4689999999999999999 89999999999999977 456799999887   56789999999999999854

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=99.09  E-value=2.6e-11  Score=118.78  Aligned_cols=73  Identities=27%  Similarity=0.537  Sum_probs=63.5

Q ss_pred             hhhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCC
Q 017736           14 VKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFP   92 (367)
Q Consensus        14 v~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp   92 (367)
                      ..+-.|.+.|+|.||.++|+.|+.+ +|+|+||..||..++....  .||.|...+   ....++-|..|.+|+..|-.
T Consensus        15 pslk~lD~lLRC~IC~eyf~ip~it-pCsHtfCSlCIR~~L~~~p--~CP~C~~~~---~Es~Lr~n~il~Eiv~S~~~   87 (442)
T KOG0287|consen   15 PSLKTLDDLLRCGICFEYFNIPMIT-PCSHTFCSLCIRKFLSYKP--QCPTCCVTV---TESDLRNNRILDEIVKSLNF   87 (442)
T ss_pred             chhhhhHHHHHHhHHHHHhcCceec-cccchHHHHHHHHHhccCC--CCCceeccc---chhhhhhhhHHHHHHHHHHH
Confidence            3556688899999999999999999 8999999999999997744  599999887   67778999999999998843

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=99.05  E-value=6.4e-11  Score=90.76  Aligned_cols=64  Identities=28%  Similarity=0.718  Sum_probs=37.1

Q ss_pred             hcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHH
Q 017736           17 ETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIR   87 (367)
Q Consensus        17 e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li   87 (367)
                      +.+++.|.|++|.++|++||.+..|.|.||..||...+..    .||+|+.+.   ...+++.|..|.+|+
T Consensus         2 ~~le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~----~CPvC~~Pa---w~qD~~~NrqLd~~i   65 (65)
T PF14835_consen    2 ERLEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS----ECPVCHTPA---WIQDIQINRQLDSMI   65 (65)
T ss_dssp             HHHHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT----B-SSS--B----S-SS----HHHHHHH
T ss_pred             hHHHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC----CCCCcCChH---HHHHHHhhhhhhccC
Confidence            4577889999999999999988799999999999886632    499999775   788899999998875

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=7.7e-11  Score=116.11  Aligned_cols=87  Identities=31%  Similarity=0.655  Sum_probs=75.7

Q ss_pred             hhhhhhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHH
Q 017736           11 VVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKI   90 (367)
Q Consensus        11 ~v~v~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~kl   90 (367)
                      .+.+.+..|.-++.|+||+.++...+++..|+|.||..||...++. +...||.||+.+  ...+.|+.|.....|+..+
T Consensus        32 Ei~~~l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~-gn~ecptcRk~l--~SkrsLr~Dp~fdaLis~i  108 (381)
T KOG0311|consen   32 EIMVDLAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRS-GNNECPTCRKKL--VSKRSLRIDPNFDALISKI  108 (381)
T ss_pred             hheecHHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh-cCCCCchHHhhc--cccccCCCCccHHHHHHHH
Confidence            3567888899999999999999999999999999999999999987 556899999876  6788899999999999999


Q ss_pred             CCCchhcccC
Q 017736           91 FPFKRRKVQA  100 (367)
Q Consensus        91 fp~~~~k~~~  100 (367)
                      |+.....+..
T Consensus       109 ~~sie~~e~~  118 (381)
T KOG0311|consen  109 YPSIEEYEAP  118 (381)
T ss_pred             hccHHHHhcc
Confidence            9985444443

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.93  E-value=4.5e-10  Score=103.45  Aligned_cols=53  Identities=30%  Similarity=0.639  Sum_probs=44.2

Q ss_pred             hhcccccccccccccccccccccCCCCCcccHHHHHHHhhc--------------CCCCccccccccc
Q 017736           16 RETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSD--------------EEADCCPVCNIDL   69 (367)
Q Consensus        16 ~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~--------------~~~~~CPvCR~~l   69 (367)
                      .-.+.+.+.|+||++.+.+|+.+ .|||.||+.||..|+..              .....||+|+..+
T Consensus        12 ~~~~~~~~~CpICld~~~dPVvT-~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~I   78 (193)
T PLN03208         12 LVDSGGDFDCNICLDQVRDPVVT-LCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDV   78 (193)
T ss_pred             eccCCCccCCccCCCcCCCcEEc-CCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcC
Confidence            33456789999999999999998 89999999999999752              1235799999877

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.86  E-value=1.2e-09  Score=75.54  Aligned_cols=39  Identities=41%  Similarity=1.075  Sum_probs=32.9

Q ss_pred             ccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccc
Q 017736           25 CPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVC   65 (367)
Q Consensus        25 CpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvC   65 (367)
                      |+||++.+.+|+.+..|||+||..||.+|+..  ...||+|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~--~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK--NPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC--TSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHC--cCCCcCC
Confidence            89999999999665599999999999999977  3679987

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.85  E-value=1.1e-09  Score=105.59  Aligned_cols=71  Identities=27%  Similarity=0.573  Sum_probs=58.7

Q ss_pred             hhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCC
Q 017736           16 RETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFP   92 (367)
Q Consensus        16 ~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp   92 (367)
                      .-.|..-+.|.||..+|..|+.+ .|||+||..||.+++..+  ..||+||.+.   ...-++.+..+..+++.|-.
T Consensus        19 L~~LDs~lrC~IC~~~i~ip~~T-tCgHtFCslCIR~hL~~q--p~CP~Cr~~~---~esrlr~~s~~~ei~es~~~   89 (391)
T COG5432          19 LKGLDSMLRCRICDCRISIPCET-TCGHTFCSLCIRRHLGTQ--PFCPVCREDP---CESRLRGSSGSREINESHAR   89 (391)
T ss_pred             hhcchhHHHhhhhhheeecceec-ccccchhHHHHHHHhcCC--CCCccccccH---HhhhcccchhHHHHHHhhhh
Confidence            34466778999999999999999 999999999999999764  4599999876   45567778888888887743

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.83  E-value=1.9e-09  Score=74.81  Aligned_cols=41  Identities=32%  Similarity=0.923  Sum_probs=36.8

Q ss_pred             ccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccc
Q 017736           25 CPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVC   65 (367)
Q Consensus        25 CpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvC   65 (367)
                      |+||++.+.+|+.+.+|||+||..||.+|+...+...||+|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            89999999999955599999999999999986566789988

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=3.6e-09  Score=97.41  Aligned_cols=70  Identities=31%  Similarity=0.693  Sum_probs=58.6

Q ss_pred             hhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCC
Q 017736           15 KRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFP   92 (367)
Q Consensus        15 ~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp   92 (367)
                      ....+.+.+.|+||+++|.+|+++ +|||+||+.||..++.  ....||.|+. ..    ..+..|..+.+++..+-.
T Consensus         6 ~~~~~~~~~~C~iC~~~~~~p~~l-~C~H~~c~~C~~~~~~--~~~~Cp~cr~-~~----~~~~~n~~l~~~~~~~~~   75 (386)
T KOG2177|consen    6 LLEVLQEELTCPICLEYFREPVLL-PCGHNFCRACLTRSWE--GPLSCPVCRP-PS----RNLRPNVLLANLVERLRQ   75 (386)
T ss_pred             hhhhccccccChhhHHHhhcCccc-cccchHhHHHHHHhcC--CCcCCcccCC-ch----hccCccHHHHHHHHHHHh
Confidence            445678899999999999999666 9999999999999987  5578999995 31    167799999999998853

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=2.1e-09  Score=100.93  Aligned_cols=49  Identities=31%  Similarity=0.846  Sum_probs=43.2

Q ss_pred             cccccccccccccccccccCCCCCcccHHHHHHHhhcCC-CCccccccccc
Q 017736           20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEE-ADCCPVCNIDL   69 (367)
Q Consensus        20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~-~~~CPvCR~~l   69 (367)
                      -..|.|.||++..+|||.+ .|||.||+-||++|+.... ...||+|+..+
T Consensus        45 ~~~FdCNICLd~akdPVvT-lCGHLFCWpClyqWl~~~~~~~~cPVCK~~V   94 (230)
T KOG0823|consen   45 GGFFDCNICLDLAKDPVVT-LCGHLFCWPCLYQWLQTRPNSKECPVCKAEV   94 (230)
T ss_pred             CCceeeeeeccccCCCEEe-ecccceehHHHHHHHhhcCCCeeCCcccccc
Confidence            4578999999999999999 8999999999999998754 36789999766

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.63  E-value=2.3e-08  Score=68.60  Aligned_cols=44  Identities=36%  Similarity=0.909  Sum_probs=38.0

Q ss_pred             cccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccc
Q 017736           24 TCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNID   68 (367)
Q Consensus        24 tCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~   68 (367)
                      .|+||++.+.+++.+..|||.||..|+..|+.. +...||.|+..
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~-~~~~Cp~C~~~   44 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKS-GKNTCPLCRTP   44 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence            499999999888888669999999999999976 45679999864

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.60  E-value=2.6e-08  Score=72.39  Aligned_cols=46  Identities=28%  Similarity=0.725  Sum_probs=38.6

Q ss_pred             ccccccccccccccccccCCCCCc-ccHHHHHHHhhcCCCCccccccccc
Q 017736           21 ACMTCPLCNSLLREATTISLCLHT-FCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        21 d~LtCpIC~~ll~dPvtl~~CgHt-FC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      ++..|.||++...+++.+ +|||. ||..|+.+++..  ...||+||.++
T Consensus         1 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~--~~~CP~Cr~~i   47 (50)
T PF13920_consen    1 EDEECPICFENPRDVVLL-PCGHLCFCEECAERLLKR--KKKCPICRQPI   47 (50)
T ss_dssp             -HSB-TTTSSSBSSEEEE-TTCEEEEEHHHHHHHHHT--TSBBTTTTBB-
T ss_pred             CcCCCccCCccCCceEEe-CCCChHHHHHHhHHhccc--CCCCCcCChhh
Confidence            357899999999998888 99999 999999999873  56799999876

...

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.58  E-value=1.9e-08  Score=71.15  Aligned_cols=41  Identities=39%  Similarity=0.855  Sum_probs=32.7

Q ss_pred             cccccccccc--cccccCCCCCcccHHHHHHHhhcCCCCcccccc
Q 017736           24 TCPLCNSLLR--EATTISLCLHTFCRKCIYEKLSDEEADCCPVCN   66 (367)
Q Consensus        24 tCpIC~~ll~--dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR   66 (367)
                      .|+||++.|.  +.+..+.|||.||..||.+|+...  ..||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~--~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN--NSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS--SB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC--CcCCccC
Confidence            5999999884  344444899999999999999874  4799996

...

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.57  E-value=3.4e-08  Score=94.10  Aligned_cols=48  Identities=27%  Similarity=0.667  Sum_probs=38.6

Q ss_pred             ccccccccccccccccc-------ccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           20 EACMTCPLCNSLLREAT-------TISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        20 ed~LtCpIC~~ll~dPv-------tl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      .++..|+||++.+.++.       .+..|+|.||..||.+|+..  ...||+||..+
T Consensus       172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~--~~tCPlCR~~~  226 (238)
T PHA02929        172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE--KNTCPVCRTPF  226 (238)
T ss_pred             CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc--CCCCCCCCCEe
Confidence            45689999999876541       33389999999999999965  35799999876

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=2.9e-08  Score=95.95  Aligned_cols=48  Identities=33%  Similarity=0.697  Sum_probs=42.1

Q ss_pred             ccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           19 LEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        19 Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      .+....|.||++...+|.-+ +|||.||+.||..|.....  .||+||..+
T Consensus       236 ~~a~~kC~LCLe~~~~pSaT-pCGHiFCWsCI~~w~~ek~--eCPlCR~~~  283 (293)
T KOG0317|consen  236 PEATRKCSLCLENRSNPSAT-PCGHIFCWSCILEWCSEKA--ECPLCREKF  283 (293)
T ss_pred             CCCCCceEEEecCCCCCCcC-cCcchHHHHHHHHHHcccc--CCCcccccC
Confidence            34558899999999999999 9999999999999997644  499999876

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.54  E-value=3.5e-08  Score=70.36  Aligned_cols=37  Identities=27%  Similarity=0.843  Sum_probs=23.4

Q ss_pred             cccccccccc----ccccCCCCCcccHHHHHHHhhcC--CCCccc
Q 017736           25 CPLCNSLLRE----ATTISLCLHTFCRKCIYEKLSDE--EADCCP   63 (367)
Q Consensus        25 CpIC~~ll~d----Pvtl~~CgHtFC~~CI~~~l~~~--~~~~CP   63 (367)
                      ||||.+ |.+    |+.+ .|||+||+.||.+++...  ..+.||
T Consensus         1 CpIc~e-~~~~~n~P~~L-~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVL-PCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE--SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEE-eCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 887    9999 799999999999999864  357787

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=5.1e-08  Score=88.49  Aligned_cols=52  Identities=29%  Similarity=0.752  Sum_probs=41.6

Q ss_pred             hhhccccccccccccccccc--ccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           15 KRETLEACMTCPLCNSLLRE--ATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        15 ~~e~Led~LtCpIC~~ll~d--Pvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      ....-+..+.||||++-+.+  |+.+ .|||.||..||...+...  ..||+|+..+
T Consensus       124 ~~~~~~~~~~CPiCl~~~sek~~vsT-kCGHvFC~~Cik~alk~~--~~CP~C~kkI  177 (187)
T KOG0320|consen  124 DPLRKEGTYKCPICLDSVSEKVPVST-KCGHVFCSQCIKDALKNT--NKCPTCRKKI  177 (187)
T ss_pred             cccccccccCCCceecchhhcccccc-ccchhHHHHHHHHHHHhC--CCCCCccccc
Confidence            33444567899999998875  4556 999999999999999763  4699999765

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.36  E-value=2.3e-07  Score=65.88  Aligned_cols=42  Identities=26%  Similarity=0.741  Sum_probs=33.1

Q ss_pred             ccccccccc--ccccccCCCCCcccHHHHHHHhhcCCCCccccccc
Q 017736           24 TCPLCNSLL--REATTISLCLHTFCRKCIYEKLSDEEADCCPVCNI   67 (367)
Q Consensus        24 tCpIC~~ll--~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~   67 (367)
                      .|+||.+.+  ..+..++.|||+||..|+....  .....||+|++
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~--~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK--GKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc--CCCCCCcCCCC
Confidence            489999998  3344444999999999999987  34567999973

>smart00184 RING Ring finger

Probab=98.36  E-value=2.3e-07  Score=61.35  Aligned_cols=39  Identities=41%  Similarity=1.086  Sum_probs=33.9

Q ss_pred             ccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccc
Q 017736           25 CPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVC   65 (367)
Q Consensus        25 CpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvC   65 (367)
                      |+||++....++.+ +|||.||..|+..|+.. +...||+|
T Consensus         1 C~iC~~~~~~~~~~-~C~H~~c~~C~~~~~~~-~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVL-PCGHTFCRSCIRKWLKS-GNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEe-cCCChHHHHHHHHHHHh-CcCCCCCC
Confidence            89999998888888 99999999999999973 44579987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=2.2e-07  Score=95.77  Aligned_cols=48  Identities=27%  Similarity=0.652  Sum_probs=42.4

Q ss_pred             cccccccccccccccccCCCCCcccHHHHHHHhhcC---CCCcccccccccC
Q 017736           22 CMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDE---EADCCPVCNIDLG   70 (367)
Q Consensus        22 ~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~---~~~~CPvCR~~l~   70 (367)
                      .+.||||+....-|+.+ .|||.||..||.++|...   +-..||+|+..++
T Consensus       186 ~~~CPICL~~~~~p~~t-~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~  236 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRT-NCGHIFCGPCILQYWNYSAIKGPCSCPICRSTIT  236 (513)
T ss_pred             CCcCCcccCCCCccccc-ccCceeeHHHHHHHHhhhcccCCccCCchhhhcc
Confidence            78999999999999999 799999999999999864   2367999998774

>PHA02926 zinc finger-like protein; Provisional

Probab=98.33  E-value=3e-07  Score=86.39  Aligned_cols=52  Identities=23%  Similarity=0.614  Sum_probs=39.9

Q ss_pred             cccccccccccccccccc--------cccCCCCCcccHHHHHHHhhcC----CCCccccccccc
Q 017736           18 TLEACMTCPLCNSLLREA--------TTISLCLHTFCRKCIYEKLSDE----EADCCPVCNIDL   69 (367)
Q Consensus        18 ~Led~LtCpIC~~ll~dP--------vtl~~CgHtFC~~CI~~~l~~~----~~~~CPvCR~~l   69 (367)
                      ....+..|+||++...++        -.+..|+|.||..||..|....    ....||+||..+
T Consensus       166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f  229 (242)
T PHA02926        166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRF  229 (242)
T ss_pred             hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCccee
Confidence            345679999999986543        1344899999999999998742    135699999876

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.30  E-value=6.6e-07  Score=87.04  Aligned_cols=67  Identities=34%  Similarity=0.660  Sum_probs=56.8

Q ss_pred             ccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCC
Q 017736           23 MTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFP   92 (367)
Q Consensus        23 LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp   92 (367)
                      |.|++|..++++|+.+..|+|+||..||...+-+ ..+.||.|...-  ..++.|.+|...+..++.++.
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~d-sDf~CpnC~rkd--vlld~l~pD~dk~~EvE~~lk  341 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLD-SDFKCPNCSRKD--VLLDGLTPDIDKKLEVEKALK  341 (427)
T ss_pred             ccCcchhhhhhCcccCccccchHHHHHHhhhhhh-ccccCCCccccc--chhhccCccHHHHHHHHHHHH
Confidence            8999999999999999889999999999998866 458899997521  256788899888888888765

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.22  E-value=1.3e-06  Score=85.96  Aligned_cols=48  Identities=27%  Similarity=0.748  Sum_probs=36.8

Q ss_pred             ccccccccccc-ccccc---ccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           21 ACMTCPLCNSL-LREAT---TISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        21 d~LtCpIC~~l-l~dPv---tl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      ++..||+|... +..|-   .+.+|||.||..||...|.. +...||.|+..+
T Consensus         2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~-~~~~CP~C~~~l   53 (309)
T TIGR00570         2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-GSGSCPECDTPL   53 (309)
T ss_pred             CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcC-CCCCCCCCCCcc
Confidence            35789999983 33442   33379999999999998865 446899999877

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=7.7e-07  Score=90.55  Aligned_cols=129  Identities=20%  Similarity=0.328  Sum_probs=80.0

Q ss_pred             hhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCC-CCCCC-CChHHHHHHHHHCC
Q 017736           15 KRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLP-VEKLR-PDHNLQDIRAKIFP   92 (367)
Q Consensus        15 ~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~-~~~lr-~n~~L~~li~klfp   92 (367)
                      ....+..+|.|.||..+|..||++ +|||+||..||.+.+..  ...||.|+..+.... ..... .+..+..++..|++
T Consensus        77 ~~~~~~sef~c~vc~~~l~~pv~t-pcghs~c~~Cl~r~ld~--~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~  153 (398)
T KOG4159|consen   77 GPEEIRSEFECCVCSRALYPPVVT-PCGHSFCLECLDRSLDQ--ETECPLCRDELVELPALEQALSLNRLLCKLITKFLE  153 (398)
T ss_pred             cCccccchhhhhhhHhhcCCCccc-cccccccHHHHHHHhcc--CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhh
Confidence            344568899999999999999999 99999999999998754  457999998774211 11112 35666678888876


Q ss_pred             CchhcccCCCCCCCCCCchhhhccccc-ceeecCCCcccCCCCCCCccchhhhhh
Q 017736           93 FKRRKVQAPEVMPSISLPAKRKERSLS-SLVVSTPKVPQHTGLTGKRTKGSTRKA  146 (367)
Q Consensus        93 ~~~~k~~~~E~~~~v~~~~kRKerSLs-SL~v~tP~vs~~~~~tgrRtk~~~r~a  146 (367)
                      .............-....-......+. =-+...|.+......-|.|-+--.|+.
T Consensus       154 ~~~~~s~~~~~~~~~e~~~~e~~~p~f~v~~~~~p~v~cpl~vfe~~y~lm~~r~  208 (398)
T KOG4159|consen  154 GSSSFSPKASEKSKEEESSRECESPLFPVCTLAFPEVPCPLQVFEPRYRLMIRRL  208 (398)
T ss_pred             hhhccchhhhhhhccccccccccCCcccccccccccccCcHHHccchHHHHHHHH
Confidence            543311100000000011111222221 112346777778888888888766664

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=6e-07  Score=86.03  Aligned_cols=49  Identities=24%  Similarity=0.585  Sum_probs=42.2

Q ss_pred             cccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      ..++.|.||++....|..+ +|||.||..||...+.......||+||...
T Consensus       213 ~~d~kC~lC~e~~~~ps~t-~CgHlFC~~Cl~~~~t~~k~~~CplCRak~  261 (271)
T COG5574         213 LADYKCFLCLEEPEVPSCT-PCGHLFCLSCLLISWTKKKYEFCPLCRAKV  261 (271)
T ss_pred             ccccceeeeecccCCcccc-cccchhhHHHHHHHHHhhccccCchhhhhc
Confidence            5588999999999999999 999999999999955555556699999754

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=98.16  E-value=5.2e-08  Score=100.38  Aligned_cols=130  Identities=22%  Similarity=0.326  Sum_probs=85.5

Q ss_pred             cccccccccccccccccccCCCCCcccHHHHHHHhhc---CCCCcccccccccCCCCCCC----CC-CChHHHHHHHHHC
Q 017736           20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSD---EEADCCPVCNIDLGCLPVEK----LR-PDHNLQDIRAKIF   91 (367)
Q Consensus        20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~---~~~~~CPvCR~~l~~~~~~~----lr-~n~~L~~li~klf   91 (367)
                      .....|.+|.+...+++.. .|.|+||+.||.+++..   .....||+|...+.......    +. ..+....|+.++-
T Consensus       534 k~~~~C~lc~d~aed~i~s-~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRin  612 (791)
T KOG1002|consen  534 KGEVECGLCHDPAEDYIES-SCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRIN  612 (791)
T ss_pred             cCceeecccCChhhhhHhh-hhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcc
Confidence            4567899999999999999 99999999999888754   23478999998874221111    11 0122344555554


Q ss_pred             CCchhcccCCCCCCCCCCchhhhcccccceeecCCCcccCCCCCCCccchhhhhhhhhhcC
Q 017736           92 PFKRRKVQAPEVMPSISLPAKRKERSLSSLVVSTPKVPQHTGLTGKRTKGSTRKAAALRGC  152 (367)
Q Consensus        92 p~~~~k~~~~E~~~~v~~~~kRKerSLsSL~v~tP~vs~~~~~tgrRtk~~~r~aa~l~~~  152 (367)
                      -...+....-|++.....-.+.+++++.++++  .+|++..++..+|.+.++.....|.|+
T Consensus       613 m~~~qsSTKIEAL~EEl~~l~~rd~t~KsIVF--SQFTSmLDLi~~rL~kaGfscVkL~Gs  671 (791)
T KOG1002|consen  613 MDDWQSSTKIEALVEELYFLRERDRTAKSIVF--SQFTSMLDLIEWRLGKAGFSCVKLVGS  671 (791)
T ss_pred             hhhhcchhHHHHHHHHHHHHHHcccchhhhhH--HHHHHHHHHHHHHhhccCceEEEeccC
Confidence            33333333333333223335778899999985  456778888999888766666555544

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=98.11  E-value=1.5e-06  Score=65.59  Aligned_cols=45  Identities=22%  Similarity=0.537  Sum_probs=33.8

Q ss_pred             cccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccc
Q 017736           20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPV   64 (367)
Q Consensus        20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPv   64 (367)
                      .-.+.|||.+..|.+||....|+|+|.+..|.+++...+...||+
T Consensus         9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen    9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            456899999999999999779999999999999997667788998

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=2.5e-06  Score=91.50  Aligned_cols=55  Identities=25%  Similarity=0.736  Sum_probs=46.8

Q ss_pred             hhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCC
Q 017736           15 KRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGC   71 (367)
Q Consensus        15 ~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~   71 (367)
                      -...+..-++|++|..-+.+.|.+ .|||.||..||...+.. ....||.|...||.
T Consensus       636 Elk~yK~~LkCs~Cn~R~Kd~vI~-kC~H~FC~~Cvq~r~et-RqRKCP~Cn~aFga  690 (698)
T KOG0978|consen  636 ELKEYKELLKCSVCNTRWKDAVIT-KCGHVFCEECVQTRYET-RQRKCPKCNAAFGA  690 (698)
T ss_pred             HHHHHHhceeCCCccCchhhHHHH-hcchHHHHHHHHHHHHH-hcCCCCCCCCCCCc
Confidence            344567789999999999999988 99999999999998876 44689999999863

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.90  E-value=4.9e-06  Score=65.46  Aligned_cols=41  Identities=29%  Similarity=0.777  Sum_probs=31.9

Q ss_pred             ccccccccccc------------ccccCCCCCcccHHHHHHHhhcCCCCcccccc
Q 017736           24 TCPLCNSLLRE------------ATTISLCLHTFCRKCIYEKLSDEEADCCPVCN   66 (367)
Q Consensus        24 tCpIC~~ll~d------------Pvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR   66 (367)
                      .|.||++.|.+            ++.+..|||.|...||.+|+...  ..||+||
T Consensus        21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~--~~CP~CR   73 (73)
T PF12678_consen   21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQN--NTCPLCR   73 (73)
T ss_dssp             BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTS--SB-TTSS
T ss_pred             cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcC--CcCCCCC
Confidence            49999999943            33444799999999999999664  4799997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=97.73  E-value=1.4e-05  Score=74.05  Aligned_cols=59  Identities=24%  Similarity=0.521  Sum_probs=45.6

Q ss_pred             ccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHH
Q 017736           23 MTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRA   88 (367)
Q Consensus        23 LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~   88 (367)
                      |.|.||...|..||.+ .|||.||..|..+.++..  ..|-+|....    ...+-+...++.|+.
T Consensus       197 F~C~iCKkdy~spvvt-~CGH~FC~~Cai~~y~kg--~~C~~Cgk~t----~G~f~V~~d~~kmL~  255 (259)
T COG5152         197 FLCGICKKDYESPVVT-ECGHSFCSLCAIRKYQKG--DECGVCGKAT----YGRFWVVSDLQKMLN  255 (259)
T ss_pred             eeehhchhhccchhhh-hcchhHHHHHHHHHhccC--Ccceecchhh----ccceeHHhhHHHHHh
Confidence            7899999999999999 999999999998888653  4699998654    233444555555554

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.72  E-value=2e-05  Score=80.25  Aligned_cols=73  Identities=33%  Similarity=0.687  Sum_probs=55.2

Q ss_pred             hhhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHH
Q 017736           14 VKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKI   90 (367)
Q Consensus        14 v~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~kl   90 (367)
                      -....+.+.+.|++|...+.+|+.++.|||.||..|+..|+..  ...||.|+..+.  ....+..+..++..+..+
T Consensus        13 ~~~~~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~--~~~cp~~~~~~~--~~~~~~~~~~~~~~~~~l   85 (391)
T KOG0297|consen   13 HLGRPLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN--HQKCPVCRQELT--QAEELPVPRALRRELLKL   85 (391)
T ss_pred             ccCCCCcccccCccccccccCCCCCCCCCCcccccccchhhcc--CcCCcccccccc--hhhccCchHHHHHHHHhc
Confidence            3344478899999999999999995589999999999999977  567999987662  333333455555555544

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.67  E-value=2.2e-05  Score=75.81  Aligned_cols=54  Identities=24%  Similarity=0.525  Sum_probs=45.9

Q ss_pred             hhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           16 RETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        16 ~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      .+.-....+|++|.+.-..|.++.+|+|.||+.||.....-.-.+.||.|....
T Consensus       233 ss~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~  286 (298)
T KOG2879|consen  233 SSTGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENV  286 (298)
T ss_pred             cccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCC
Confidence            344567889999999999999997799999999999887665568999998765

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=3.1e-05  Score=75.63  Aligned_cols=45  Identities=24%  Similarity=0.728  Sum_probs=39.7

Q ss_pred             ccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           23 MTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        23 LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      -.|+||+.-..-||.+ .|+|.||+.||...+.. +...|++||.++
T Consensus         8 ~eC~IC~nt~n~Pv~l-~C~HkFCyiCiKGsy~n-dk~~CavCR~pi   52 (324)
T KOG0824|consen    8 KECLICYNTGNCPVNL-YCFHKFCYICIKGSYKN-DKKTCAVCRFPI   52 (324)
T ss_pred             CcceeeeccCCcCccc-cccchhhhhhhcchhhc-CCCCCceecCCC
Confidence            4699999999999888 99999999999988765 456799999887

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.46  E-value=4.7e-05  Score=80.54  Aligned_cols=48  Identities=23%  Similarity=0.531  Sum_probs=40.5

Q ss_pred             cccccccccccccccc-----ccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           19 LEACMTCPLCNSLLRE-----ATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        19 Led~LtCpIC~~ll~d-----Pvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      ......|+||.+.+..     |..+ +|+|.||..|+..|++..  ..||+||..+
T Consensus       288 ~~~~~~C~IC~e~l~~~~~~~~~rL-~C~Hifh~~CL~~W~er~--qtCP~CR~~~  340 (543)
T KOG0802|consen  288 ALSDELCIICLEELHSGHNITPKRL-PCGHIFHDSCLRSWFERQ--QTCPTCRTVL  340 (543)
T ss_pred             hhcCCeeeeechhhcccccccccee-ecccchHHHHHHHHHHHh--CcCCcchhhh
Confidence            3457889999999998     6666 999999999999999874  4699999743

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=6.9e-05  Score=75.04  Aligned_cols=46  Identities=33%  Similarity=0.682  Sum_probs=38.6

Q ss_pred             ccccccccccc--cccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           23 MTCPLCNSLLR--EATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        23 LtCpIC~~ll~--dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      .+|.||++.|.  +-+.+.+|.|.|-..||..|+.+.. ..||+|+..+
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r-~~CPvCK~di  277 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTR-TFCPVCKRDI  277 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcC-ccCCCCCCcC
Confidence            49999999886  5666669999999999999998753 3599999765

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.42  E-value=7e-05  Score=73.05  Aligned_cols=44  Identities=23%  Similarity=0.644  Sum_probs=38.5

Q ss_pred             ccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           23 MTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        23 LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      +-|-||...|.+||.+ .|+|+||..|....++.  ...|.+|...+
T Consensus       242 f~c~icr~~f~~pVvt-~c~h~fc~~ca~~~~qk--~~~c~vC~~~t  285 (313)
T KOG1813|consen  242 FKCFICRKYFYRPVVT-KCGHYFCEVCALKPYQK--GEKCYVCSQQT  285 (313)
T ss_pred             ccccccccccccchhh-cCCceeehhhhcccccc--CCcceeccccc
Confidence            5699999999999999 99999999999888865  34699998765

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=97.13  E-value=0.00031  Score=57.17  Aligned_cols=51  Identities=24%  Similarity=0.515  Sum_probs=39.4

Q ss_pred             ccccccccccccccc------------cccccCCCCCcccHHHHHHHhhcCC-CCccccccccc
Q 017736           19 LEACMTCPLCNSLLR------------EATTISLCLHTFCRKCIYEKLSDEE-ADCCPVCNIDL   69 (367)
Q Consensus        19 Led~LtCpIC~~ll~------------dPvtl~~CgHtFC~~CI~~~l~~~~-~~~CPvCR~~l   69 (367)
                      +..+-.|.||...|.            -|+.+-.|+|.|...||.+|+..+. ...||+||..+
T Consensus        18 ~~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w   81 (85)
T PF12861_consen   18 VANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPW   81 (85)
T ss_pred             cCCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence            345677888887764            2555557999999999999998753 36899999865

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=97.08  E-value=0.00041  Score=69.68  Aligned_cols=48  Identities=21%  Similarity=0.574  Sum_probs=38.7

Q ss_pred             cccccccccccccc-ccc------------cccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           19 LEACMTCPLCNSLL-REA------------TTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        19 Led~LtCpIC~~ll-~dP------------vtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      -.++-+|.||++-+ ..+            -.+ +|||.|-..|+..|+..+  ..||+||.++
T Consensus       284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrL-pCGHilHl~CLknW~ERq--QTCPICr~p~  344 (491)
T COG5243         284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRL-PCGHILHLHCLKNWLERQ--QTCPICRRPV  344 (491)
T ss_pred             cCCCCeEEEecccccCCCCccCcccccCCcccc-cccceeeHHHHHHHHHhc--cCCCcccCcc
Confidence            35677899999974 333            567 899999999999999764  4599999875

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.90  E-value=0.00044  Score=69.41  Aligned_cols=50  Identities=24%  Similarity=0.663  Sum_probs=40.2

Q ss_pred             ccccccccccccccccc-----c--cCCCCCcccHHHHHHHhhcCC-----CCccccccccc
Q 017736           20 EACMTCPLCNSLLREAT-----T--ISLCLHTFCRKCIYEKLSDEE-----ADCCPVCNIDL   69 (367)
Q Consensus        20 ed~LtCpIC~~ll~dPv-----t--l~~CgHtFC~~CI~~~l~~~~-----~~~CPvCR~~l   69 (367)
                      ..+..|-||++...+..     .  +..|.|.||..||..|-....     +..||.||...
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s  220 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS  220 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence            34789999999888776     2  337999999999999985544     47899999765

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.88  E-value=0.00051  Score=67.42  Aligned_cols=46  Identities=26%  Similarity=0.616  Sum_probs=37.3

Q ss_pred             ccccccccccc--cccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           23 MTCPLCNSLLR--EATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        23 LtCpIC~~ll~--dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      ..|.||+.-|.  +-+..++|.|.|...|+..|+... ...||+||..+
T Consensus       324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y-~~~CPvCrt~i  371 (374)
T COG5540         324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGY-SNKCPVCRTAI  371 (374)
T ss_pred             ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhh-cccCCccCCCC
Confidence            67999999764  445555999999999999999753 35799999876

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=96.32  E-value=0.0017  Score=66.53  Aligned_cols=37  Identities=32%  Similarity=0.840  Sum_probs=33.5

Q ss_pred             ccccccccccccccccccccCCCCCcccHHHHHHHhhc
Q 017736           19 LEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSD   56 (367)
Q Consensus        19 Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~   56 (367)
                      ++++|.|+||..+|++|+++ +|+|..|+.|....+..
T Consensus         1 meeelkc~vc~~f~~epiil-~c~h~lc~~ca~~~~~~   37 (699)
T KOG4367|consen    1 MEEELKCPVCGSFYREPIIL-PCSHNLCQACARNILVQ   37 (699)
T ss_pred             CcccccCceehhhccCceEe-ecccHHHHHHHHhhccc
Confidence            46889999999999999999 99999999999877654

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.00  E-value=0.0023  Score=48.01  Aligned_cols=45  Identities=22%  Similarity=0.634  Sum_probs=37.8

Q ss_pred             ccccccccccccccccCCCCCc-ccHHHHHHHhhcCCCCccccccccc
Q 017736           23 MTCPLCNSLLREATTISLCLHT-FCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        23 LtCpIC~~ll~dPvtl~~CgHt-FC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      -.|.||.+--.+.|.- -|||- .|+.|-.+.++. ....||+||.++
T Consensus         8 dECTICye~pvdsVlY-tCGHMCmCy~Cg~rl~~~-~~g~CPiCRapi   53 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLY-TCGHMCMCYACGLRLKKA-LHGCCPICRAPI   53 (62)
T ss_pred             cceeeeccCcchHHHH-HcchHHhHHHHHHHHHHc-cCCcCcchhhHH
Confidence            5799999998888887 79995 799999888875 446799999765

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=95.85  E-value=0.0029  Score=65.01  Aligned_cols=47  Identities=32%  Similarity=0.692  Sum_probs=37.2

Q ss_pred             ccccccccccccccccccc---ccCCCCCcccHHHHHHHhhcCCCCcccccccc
Q 017736           18 TLEACMTCPLCNSLLREAT---TISLCLHTFCRKCIYEKLSDEEADCCPVCNID   68 (367)
Q Consensus        18 ~Led~LtCpIC~~ll~dPv---tl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~   68 (367)
                      -+.+.=+||||++-+-.-+   .+..|.|+|-..|+..|..    ..||+||..
T Consensus       171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~----~scpvcR~~  220 (493)
T KOG0804|consen  171 GLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD----SSCPVCRYC  220 (493)
T ss_pred             CcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc----CcChhhhhh
Confidence            3556679999999887665   3448999999999999873    369999953

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.79  E-value=0.0068  Score=58.92  Aligned_cols=67  Identities=22%  Similarity=0.473  Sum_probs=50.4

Q ss_pred             cccccccccccc------cccccCCCCCcccHHHHHHHhhcCCCCcccccccc--cCCCCCCCCCCChHHHHHHHHH
Q 017736           22 CMTCPLCNSLLR------EATTISLCLHTFCRKCIYEKLSDEEADCCPVCNID--LGCLPVEKLRPDHNLQDIRAKI   90 (367)
Q Consensus        22 ~LtCpIC~~ll~------dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~--l~~~~~~~lr~n~~L~~li~kl   90 (367)
                      .+.|-||.+.|.      .|..+ .|||+||..|+...+.. ....||.||..  +.......+..|+.+..++..+
T Consensus         3 ~~~c~~c~~~~s~~~~~~~p~~l-~c~h~~c~~c~~~l~~~-~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~   77 (296)
T KOG4185|consen    3 FPECEICNEDYSSEDGDHIPRVL-KCGHTICQNCASKLLGN-SRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM   77 (296)
T ss_pred             CCceeecCccccccCcccCCccc-ccCceehHhHHHHHhcC-ceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence            467999998764      47777 79999999999998866 44568999987  3233446677788887777765

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=95.71  E-value=0.0043  Score=63.04  Aligned_cols=45  Identities=24%  Similarity=0.741  Sum_probs=37.0

Q ss_pred             cccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           24 TCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        24 tCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      .|.||-+--.+ |.+-+|||..|..|+..|....+...||.||..+
T Consensus       371 LCKICaendKd-vkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEI  415 (563)
T KOG1785|consen  371 LCKICAENDKD-VKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEI  415 (563)
T ss_pred             HHHHhhccCCC-cccccccchHHHHHHHhhcccCCCCCCCceeeEe
Confidence            58899886665 4555899999999999998766677899999766

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.67  E-value=0.003  Score=63.89  Aligned_cols=47  Identities=26%  Similarity=0.649  Sum_probs=34.7

Q ss_pred             cccccccccccc---cccCCCCCcccHHHHHHHhhcCCC-CcccccccccC
Q 017736           24 TCPLCNSLLREA---TTISLCLHTFCRKCIYEKLSDEEA-DCCPVCNIDLG   70 (367)
Q Consensus        24 tCpIC~~ll~dP---vtl~~CgHtFC~~CI~~~l~~~~~-~~CPvCR~~l~   70 (367)
                      .|.||.+.+-.-   -.+..|||+|-..|+.+|+..... ..||+|+..++
T Consensus         6 ~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~   56 (465)
T KOG0827|consen    6 ECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ   56 (465)
T ss_pred             eeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence            599997765421   123239999999999999987555 58999996553

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=95.67  E-value=0.0035  Score=68.10  Aligned_cols=47  Identities=23%  Similarity=0.454  Sum_probs=36.6

Q ss_pred             ccccccccccccccccc--CCCCCcccHHHHHHHhhcCCCCcccccccccC
Q 017736           22 CMTCPLCNSLLREATTI--SLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG   70 (367)
Q Consensus        22 ~LtCpIC~~ll~dPvtl--~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~   70 (367)
                      .-.||+|+.-+.+-...  ..|+|.||..||..|-+..  ..||+||..|.
T Consensus       123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a--qTCPiDR~EF~  171 (1134)
T KOG0825|consen  123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA--QTCPVDRGEFG  171 (1134)
T ss_pred             hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc--ccCchhhhhhh
Confidence            45699999877765432  2699999999999998764  46999998875

>PF04641 Rtf2: Rtf2 RING-finger

Probab=95.65  E-value=0.0079  Score=58.06  Aligned_cols=49  Identities=22%  Similarity=0.464  Sum_probs=39.8

Q ss_pred             ccccccccccccccc---cccccCCCCCcccHHHHHHHhhcCCCCcccccccccC
Q 017736           19 LEACMTCPLCNSLLR---EATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG   70 (367)
Q Consensus        19 Led~LtCpIC~~ll~---dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~   70 (367)
                      -...|.|||+...|.   .-|.+.+|||.|+..+|.+.-   ....||+|..+|.
T Consensus       110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k---~~~~Cp~c~~~f~  161 (260)
T PF04641_consen  110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK---KSKKCPVCGKPFT  161 (260)
T ss_pred             CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc---ccccccccCCccc
Confidence            467899999999885   346677999999999999863   2346999999885

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=95.63  E-value=0.0041  Score=67.65  Aligned_cols=45  Identities=29%  Similarity=0.696  Sum_probs=38.8

Q ss_pred             ccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           23 MTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        23 LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      +.|.+|.+ ...++.+ .|+|.||..|+...+.......||.|+..+
T Consensus       455 ~~c~ic~~-~~~~~it-~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l  499 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFIT-RCGHDFCVECLKKSIQQSENAPCPLCRNVL  499 (674)
T ss_pred             cccccccc-cccceee-cccchHHHHHHHhccccccCCCCcHHHHHH
Confidence            89999999 6666666 999999999999999876666899999665

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.62  E-value=0.0056  Score=67.74  Aligned_cols=53  Identities=23%  Similarity=0.726  Sum_probs=41.8

Q ss_pred             hcccccccccccccccc--c---cc-ccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           17 ETLEACMTCPLCNSLLR--E---AT-TISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        17 e~Led~LtCpIC~~ll~--d---Pv-tl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      ..+...-.|+||..++.  +   |- +-..|.|.|...|+..|+...+...||+||..+
T Consensus      1464 ~~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRsei 1522 (1525)
T COG5219        1464 EKFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522 (1525)
T ss_pred             hhcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccc
Confidence            34666778999999876  1   21 112499999999999999998889999999765

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.47  E-value=0.0091  Score=57.36  Aligned_cols=47  Identities=19%  Similarity=0.393  Sum_probs=39.8

Q ss_pred             cccccccccccccccc---ccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           21 ACMTCPLCNSLLREAT---TISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        21 d~LtCpIC~~ll~dPv---tl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      ..+.||+|.+.|.+.+   .+.+|||.||..|+...+....  .||+|..++
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~--v~pv~d~pl  269 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDM--VDPVTDKPL  269 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccc--cccCCCCcC
Confidence            6789999999998764   3458999999999999997755  499998877

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.12  E-value=0.011  Score=59.32  Aligned_cols=47  Identities=26%  Similarity=0.665  Sum_probs=38.7

Q ss_pred             cccccccccccccccccccCCCCCc-ccHHHHHHHhhcCCCCccccccccc
Q 017736           20 EACMTCPLCNSLLREATTISLCLHT-FCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        20 ed~LtCpIC~~ll~dPvtl~~CgHt-FC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      +..-.|=||+.-.++-+.+ +|.|. .|..|.....-  ....||+||.++
T Consensus       288 ~~gkeCVIClse~rdt~vL-PCRHLCLCs~Ca~~Lr~--q~n~CPICRqpi  335 (349)
T KOG4265|consen  288 ESGKECVICLSESRDTVVL-PCRHLCLCSGCAKSLRY--QTNNCPICRQPI  335 (349)
T ss_pred             cCCCeeEEEecCCcceEEe-cchhhehhHhHHHHHHH--hhcCCCccccch
Confidence            4467899999999998888 99997 69999876552  345699999877

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.07  E-value=0.0078  Score=57.44  Aligned_cols=61  Identities=21%  Similarity=0.605  Sum_probs=38.8

Q ss_pred             cccccccccc-ccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCC
Q 017736           23 MTCPLCNSLL-REATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFP   92 (367)
Q Consensus        23 LtCpIC~~ll-~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp   92 (367)
                      ..|-.|...- .+|..++.|+|.||..|......    ..||+|+..+.     ....+..|-.-+..||.
T Consensus         4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~----~~C~lCkk~ir-----~i~l~~slp~~ik~~F~   65 (233)
T KOG4739|consen    4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP----DVCPLCKKSIR-----IIQLNRSLPTDIKSYFA   65 (233)
T ss_pred             EEeccccccCCCCceeeeechhhhhhhhcccCCc----cccccccceee-----eeecccccchhHHHHcc
Confidence            3466666532 57777889999999999865432    26999998752     23333334444445543

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.04  E-value=0.01  Score=60.47  Aligned_cols=47  Identities=30%  Similarity=0.584  Sum_probs=37.2

Q ss_pred             cccccccccccccccc----ccCCCCCcccHHHHHHHhhcCCCCccccccc
Q 017736           21 ACMTCPLCNSLLREAT----TISLCLHTFCRKCIYEKLSDEEADCCPVCNI   67 (367)
Q Consensus        21 d~LtCpIC~~ll~dPv----tl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~   67 (367)
                      ...+||||++-+.-|.    ....|||.|=..||..|+.+.....||.|..
T Consensus         3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~   53 (463)
T KOG1645|consen    3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSG   53 (463)
T ss_pred             ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCC
Confidence            4578999999776542    3338999999999999996544578999974

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=94.97  E-value=0.018  Score=50.55  Aligned_cols=65  Identities=18%  Similarity=0.444  Sum_probs=49.9

Q ss_pred             hHhhhh--hhhhhhhhhcccccccccccccccccccccCC---CCCcccHHHHHHHhhcCCC-Cccccccccc
Q 017736            3 TVRTTA--RHVVKVKRETLEACMTCPLCNSLLREATTISL---CLHTFCRKCIYEKLSDEEA-DCCPVCNIDL   69 (367)
Q Consensus         3 ~~~~ma--~~~v~v~~e~Led~LtCpIC~~ll~dPvtl~~---CgHtFC~~CI~~~l~~~~~-~~CPvCR~~l   69 (367)
                      ++..|.  .+++.|..+.  .-++|.||.+...|...+.+   ||-..|..|....|+.-.. ..||+|++.+
T Consensus        61 ~I~~~n~r~qvmnvF~d~--~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSF  131 (140)
T PF05290_consen   61 KIKAINRRLQVMNVFLDP--KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSF  131 (140)
T ss_pred             HHHHHHHHHHHheeecCC--CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccc
Confidence            444443  3456666675  67999999999888777643   9999999999999876432 6799999877

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=94.95  E-value=0.0075  Score=47.14  Aligned_cols=48  Identities=23%  Similarity=0.482  Sum_probs=22.5

Q ss_pred             cccccccccccc----cccccC---CCCCcccHHHHHHHhhcCCC---------Cccccccccc
Q 017736           22 CMTCPLCNSLLR----EATTIS---LCLHTFCRKCIYEKLSDEEA---------DCCPVCNIDL   69 (367)
Q Consensus        22 ~LtCpIC~~ll~----dPvtl~---~CgHtFC~~CI~~~l~~~~~---------~~CPvCR~~l   69 (367)
                      ++.|+||...+.    .|...-   .|++.|-..||.+||.....         ..||.|+.++
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i   65 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPI   65 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCee
Confidence            578999998754    233332   48889999999999875211         2599999876

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.95  E-value=0.014  Score=58.66  Aligned_cols=47  Identities=26%  Similarity=0.549  Sum_probs=39.5

Q ss_pred             cccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      .++-.||||.---..+|.. +|+|.-|+.||.+++-+  ...|-.|...+
T Consensus       420 sEd~lCpICyA~pi~Avf~-PC~H~SC~~CI~qHlmN--~k~CFfCktTv  466 (489)
T KOG4692|consen  420 SEDNLCPICYAGPINAVFA-PCSHRSCYGCITQHLMN--CKRCFFCKTTV  466 (489)
T ss_pred             cccccCcceecccchhhcc-CCCCchHHHHHHHHHhc--CCeeeEeccee
Confidence            4567799999888888888 99999999999999965  45699998654

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.90  E-value=0.012  Score=61.35  Aligned_cols=49  Identities=24%  Similarity=0.599  Sum_probs=35.3

Q ss_pred             ccccccccccccccc----------------ccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           20 EACMTCPLCNSLLRE----------------ATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        20 ed~LtCpIC~~ll~d----------------Pvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      +..--|+||+..+.-                -..+++|.|.|-+.|+.+|+..- ...||+||.++
T Consensus       569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~y-kl~CPvCR~pL  633 (636)
T KOG0828|consen  569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTY-KLICPVCRCPL  633 (636)
T ss_pred             hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhh-cccCCccCCCC
Confidence            445569999874320                02233999999999999999642 24799999876

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=94.88  E-value=0.019  Score=56.19  Aligned_cols=45  Identities=29%  Similarity=0.683  Sum_probs=34.4

Q ss_pred             ccccccc-ccccc---cccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           24 TCPLCNS-LLREA---TTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        24 tCpIC~~-ll~dP---vtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      .||+|.. .+.+|   +.+-+|+|+.|..|+...+.. +...||.|...+
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~-g~~~CpeC~~iL   50 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSL-GPAQCPECMVIL   50 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhc-CCCCCCcccchh
Confidence            4999986 33444   123389999999999998876 557899998776

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=94.67  E-value=0.023  Score=41.43  Aligned_cols=42  Identities=14%  Similarity=0.522  Sum_probs=33.1

Q ss_pred             ccccccc--ccccccccCCCC-----CcccHHHHHHHhhcCCCCcccccc
Q 017736           24 TCPLCNS--LLREATTISLCL-----HTFCRKCIYEKLSDEEADCCPVCN   66 (367)
Q Consensus        24 tCpIC~~--ll~dPvtl~~Cg-----HtFC~~CI~~~l~~~~~~~CPvCR   66 (367)
                      .|.||++  .-.++... +|.     |.|-..|+.+|+...+...||+|+
T Consensus         1 ~CrIC~~~~~~~~~l~~-PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVS-PCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEe-ccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            4889987  33456655 885     778999999999887777899994

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=94.46  E-value=0.037  Score=40.50  Aligned_cols=44  Identities=34%  Similarity=0.716  Sum_probs=21.5

Q ss_pred             cccccccccc---ccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           25 CPLCNSLLRE---ATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        25 CpIC~~ll~d---Pvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      ||+|.+.+..   -+.--+||+.+|+.|..+.+.+ +...||.||.++
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~-~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILEN-EGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTS-S-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhc-cCCCCCCCCCCC
Confidence            7888887621   1122368999999999998864 446799999765

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.16  E-value=0.022  Score=60.98  Aligned_cols=40  Identities=28%  Similarity=0.711  Sum_probs=32.1

Q ss_pred             ccccccccccccccc----cccccCCCCCcccHHHHHHHhhcCCCCccc
Q 017736           19 LEACMTCPLCNSLLR----EATTISLCLHTFCRKCIYEKLSDEEADCCP   63 (367)
Q Consensus        19 Led~LtCpIC~~ll~----dPvtl~~CgHtFC~~CI~~~l~~~~~~~CP   63 (367)
                      +.+.+.|+||+..|.    .||.+ -|||+.|+.|++..+..    .||
T Consensus         8 w~~~l~c~ic~n~f~~~~~~Pvsl-~cghtic~~c~~~lyn~----scp   51 (861)
T KOG3161|consen    8 WVLLLLCDICLNLFVVQRLEPVSL-QCGHTICGHCVQLLYNA----SCP   51 (861)
T ss_pred             hHHHhhchHHHHHHHHHhcCcccc-cccchHHHHHHHhHhhc----cCC
Confidence            455688999988764    69999 89999999999876633    477

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=94.12  E-value=0.042  Score=59.58  Aligned_cols=53  Identities=21%  Similarity=0.678  Sum_probs=43.8

Q ss_pred             hhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCC-CCccccccccc
Q 017736           16 RETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEE-ADCCPVCNIDL   69 (367)
Q Consensus        16 ~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~-~~~CPvCR~~l   69 (367)
                      ...+.-.+.|+||...+.+|+.+ .|.|.||..|+...+.... ...||+|+..+
T Consensus        15 i~~~~k~lEc~ic~~~~~~p~~~-kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~   68 (684)
T KOG4362|consen   15 INAMQKILECPICLEHVKEPSLL-KCDHIFLKFCLNKLFESKKGPKQCALCKSDI   68 (684)
T ss_pred             HHHHhhhccCCceeEEeeccchh-hhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence            34556689999999999999888 9999999999987776543 47899999655

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=94.06  E-value=0.026  Score=56.19  Aligned_cols=48  Identities=23%  Similarity=0.538  Sum_probs=39.1

Q ss_pred             cccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      .+.-.||||+.--.+|..+..-|-.||+.||..++.+.  ..||+-..+.
T Consensus       298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~--~~CPVT~~p~  345 (357)
T KOG0826|consen  298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNY--GHCPVTGYPA  345 (357)
T ss_pred             CccccChhHHhccCCCceEEecceEEeHHHHHHHHHhc--CCCCccCCcc
Confidence            34567999999999998885669999999999999864  4699876543

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.89  E-value=0.017  Score=56.25  Aligned_cols=50  Identities=20%  Similarity=0.450  Sum_probs=39.4

Q ss_pred             ccccccccccccccccc----------cccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           19 LEACMTCPLCNSLLREA----------TTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        19 Led~LtCpIC~~ll~dP----------vtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      -.++-.|.||.+-+...          .++ .|+|.|-..||..|-.-+....||.|...+
T Consensus       221 hl~d~vCaVCg~~~~~s~~eegvienty~L-sCnHvFHEfCIrGWcivGKkqtCPYCKekV  280 (328)
T KOG1734|consen  221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKL-SCNHVFHEFCIRGWCIVGKKQTCPYCKEKV  280 (328)
T ss_pred             CCCcchhHhhcchheeecchhhhhhhheee-ecccchHHHhhhhheeecCCCCCchHHHHh
Confidence            34567799999866433          356 899999999999997776667899998665

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.87  E-value=0.011  Score=58.10  Aligned_cols=41  Identities=27%  Similarity=0.662  Sum_probs=34.7

Q ss_pred             cccccccccccccccccCCCCCc-ccHHHHHHHhhcCCCCccccccccc
Q 017736           22 CMTCPLCNSLLREATTISLCLHT-FCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        22 ~LtCpIC~~ll~dPvtl~~CgHt-FC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      ...|.||++.-++-+.+ +|||. -|..|-.++      ..||+||+.+
T Consensus       300 ~~LC~ICmDaP~DCvfL-eCGHmVtCt~CGkrm------~eCPICRqyi  341 (350)
T KOG4275|consen  300 RRLCAICMDAPRDCVFL-ECGHMVTCTKCGKRM------NECPICRQYI  341 (350)
T ss_pred             HHHHHHHhcCCcceEEe-ecCcEEeehhhcccc------ccCchHHHHH
Confidence            67899999999999999 99994 699996542      3699999765

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.76  E-value=0.041  Score=53.02  Aligned_cols=47  Identities=17%  Similarity=0.196  Sum_probs=41.2

Q ss_pred             hhhhhhhhhcccccccccccccccccccccCCCCCcccHHHHHHHhhc
Q 017736            9 RHVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSD   56 (367)
Q Consensus         9 ~~~v~v~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~   56 (367)
                      .+..++..+.+.+.-.|.+|++.+++||.+ +=||.||+.||.+++-.
T Consensus        30 Tq~~RLgrDsiK~FdcCsLtLqPc~dPvit-~~GylfdrEaILe~ila   76 (303)
T KOG3039|consen   30 TQRERLGRDSIKPFDCCSLTLQPCRDPVIT-PDGYLFDREAILEYILA   76 (303)
T ss_pred             hhhhhhcccccCCcceeeeecccccCCccC-CCCeeeeHHHHHHHHHH
Confidence            445567778888888999999999999999 99999999999998754

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.14  E-value=0.035  Score=55.87  Aligned_cols=46  Identities=26%  Similarity=0.545  Sum_probs=35.2

Q ss_pred             cccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           18 TLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        18 ~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      .+.....|-||.+-..+.+.+ +|||.-|  |..-+..   ...||+||..+
T Consensus       301 ~~~~p~lcVVcl~e~~~~~fv-pcGh~cc--ct~cs~~---l~~CPvCR~rI  346 (355)
T KOG1571|consen  301 ELPQPDLCVVCLDEPKSAVFV-PCGHVCC--CTLCSKH---LPQCPVCRQRI  346 (355)
T ss_pred             ccCCCCceEEecCCccceeee-cCCcEEE--chHHHhh---CCCCchhHHHH
Confidence            345567799999999999998 9999977  7654432   23499999765

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.09  E-value=0.078  Score=38.86  Aligned_cols=46  Identities=26%  Similarity=0.473  Sum_probs=24.9

Q ss_pred             cccccccccccccccccCCCCCcccHHH--HHHHhhcCCCCccccccc
Q 017736           22 CMTCPLCNSLLREATTISLCLHTFCRKC--IYEKLSDEEADCCPVCNI   67 (367)
Q Consensus        22 ~LtCpIC~~ll~dPvtl~~CgHtFC~~C--I~~~l~~~~~~~CPvCR~   67 (367)
                      .|.|||....+..|+....|.|.-|.+=  +...........||+|.+
T Consensus         2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~   49 (50)
T PF02891_consen    2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNK   49 (50)
T ss_dssp             ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT--
T ss_pred             eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcC
Confidence            3789999999999999889999876532  233333345588999975

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=93.06  E-value=0.044  Score=55.79  Aligned_cols=55  Identities=25%  Similarity=0.551  Sum_probs=42.6

Q ss_pred             hhhhhcccccccccccccccc---cccccCCCCCcccHHHHHHHhhcCCCCccccccc
Q 017736           13 KVKRETLEACMTCPLCNSLLR---EATTISLCLHTFCRKCIYEKLSDEEADCCPVCNI   67 (367)
Q Consensus        13 ~v~~e~Led~LtCpIC~~ll~---dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~   67 (367)
                      .+..-.-+-.+.|..|.+.+-   +-....+|.|.|-.+|+++++.+.+...||.||+
T Consensus       356 ra~~~~~e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  356 RAHECVEETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             HHHHHHHHHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            333333455688999999763   3445559999999999999998888889999984

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=92.99  E-value=0.042  Score=41.29  Aligned_cols=46  Identities=22%  Similarity=0.609  Sum_probs=35.2

Q ss_pred             ccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           19 LEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        19 Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      +..+..|-.|...-...+.+ +|||..|..|..-.    .-..||.|..++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~-pCgH~I~~~~f~~~----rYngCPfC~~~~   49 (55)
T PF14447_consen    4 QQPEQPCVFCGFVGTKGTVL-PCGHLICDNCFPGE----RYNGCPFCGTPF   49 (55)
T ss_pred             cccceeEEEccccccccccc-cccceeeccccChh----hccCCCCCCCcc
Confidence            34566788888877777777 99999999997542    234599999877

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=92.88  E-value=0.073  Score=52.75  Aligned_cols=63  Identities=17%  Similarity=0.406  Sum_probs=45.9

Q ss_pred             cccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHC
Q 017736           18 TLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIF   91 (367)
Q Consensus        18 ~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klf   91 (367)
                      .+.+.+.||||.+.+..|+.--.=||.-|..|-.+..     ..||.|+.+++     + .....++.+++..+
T Consensus        44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~-----~~CP~Cr~~~g-----~-~R~~amEkV~e~~~  106 (299)
T KOG3002|consen   44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVS-----NKCPTCRLPIG-----N-IRCRAMEKVAEAVL  106 (299)
T ss_pred             cchhhccCchhhccCcccceecCCCcEehhhhhhhhc-----ccCCccccccc-----c-HHHHHHHHHHHhce
Confidence            3566788999999999998863338999999976432     46999998773     1 24456666666553

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=92.62  E-value=0.073  Score=43.00  Aligned_cols=32  Identities=28%  Similarity=0.646  Sum_probs=26.1

Q ss_pred             cccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           36 TTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        36 vtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      +..-.|.|.|-..||.+|+...+  .||+|++.+
T Consensus        49 v~wG~CnHaFH~HCI~rWL~Tk~--~CPld~q~w   80 (88)
T COG5194          49 VVWGVCNHAFHDHCIYRWLDTKG--VCPLDRQTW   80 (88)
T ss_pred             EEEEecchHHHHHHHHHHHhhCC--CCCCCCcee
Confidence            44335999999999999998754  499999876

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=92.26  E-value=0.035  Score=44.44  Aligned_cols=46  Identities=28%  Similarity=0.678  Sum_probs=35.1

Q ss_pred             cccccccccc------------cccccCCCCCcccHHHHHHHhhcCCC-Cccccccccc
Q 017736           24 TCPLCNSLLR------------EATTISLCLHTFCRKCIYEKLSDEEA-DCCPVCNIDL   69 (367)
Q Consensus        24 tCpIC~~ll~------------dPvtl~~CgHtFC~~CI~~~l~~~~~-~~CPvCR~~l   69 (367)
                      +|-||.-.|.            -|+.+--|.|.|-..||.+|+....+ ..||+||+.+
T Consensus        22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~   80 (84)
T KOG1493|consen   22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW   80 (84)
T ss_pred             ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence            7777776664            24554469999999999999976543 6799999765

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=92.01  E-value=0.088  Score=52.84  Aligned_cols=51  Identities=22%  Similarity=0.421  Sum_probs=35.3

Q ss_pred             hccccccccccccccccc---ccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           17 ETLEACMTCPLCNSLLRE---ATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        17 e~Led~LtCpIC~~ll~d---Pvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      ++-++++ ||+|.+.+..   -..-.+||-..|+.|+...-++ -...||.||..+
T Consensus        10 sedeed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~-lngrcpacrr~y   63 (480)
T COG5175          10 SEDEEDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN-LNGRCPACRRKY   63 (480)
T ss_pred             ccccccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhh-ccCCChHhhhhc
Confidence            4445566 9999986542   2233368888899998775444 345799999876

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=90.82  E-value=0.071  Score=51.21  Aligned_cols=47  Identities=30%  Similarity=0.660  Sum_probs=33.8

Q ss_pred             cccccccccc-cccc-c--ccC-CCCCcccHHHHHHHhhcCCCCccc--cccccc
Q 017736           22 CMTCPLCNSL-LREA-T--TIS-LCLHTFCRKCIYEKLSDEEADCCP--VCNIDL   69 (367)
Q Consensus        22 ~LtCpIC~~l-l~dP-v--tl~-~CgHtFC~~CI~~~l~~~~~~~CP--vCR~~l   69 (367)
                      +-.||||... +-+| +  .+. .|.|..|..|+.+.+.. +...||  -|...+
T Consensus        10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~-GpAqCP~~gC~kIL   63 (314)
T COG5220          10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSR-GPAQCPYKGCGKIL   63 (314)
T ss_pred             cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcC-CCCCCCCccHHHHH
Confidence            4579999862 2233 1  111 59999999999999987 556899  687655

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=90.37  E-value=0.16  Score=51.25  Aligned_cols=53  Identities=23%  Similarity=0.511  Sum_probs=39.0

Q ss_pred             hhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           16 RETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        16 ~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      .+.-++...|-||-.-+.--..+ +|+|..|.-|..+.-.-.....||+|+...
T Consensus        55 ddtDEen~~C~ICA~~~TYs~~~-PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~  107 (493)
T COG5236          55 DDTDEENMNCQICAGSTTYSARY-PCGHQICHACAVRLRALYMQKGCPLCRTET  107 (493)
T ss_pred             cccccccceeEEecCCceEEEec-cCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence            34467889999999876655555 899999999986643323346699999653

>PHA03096 p28-like protein; Provisional

Probab=89.95  E-value=0.16  Score=49.96  Aligned_cols=44  Identities=18%  Similarity=0.282  Sum_probs=30.5

Q ss_pred             cccccccccccc-c------cccCCCCCcccHHHHHHHhhcCC-CCcccccc
Q 017736           23 MTCPLCNSLLRE-A------TTISLCLHTFCRKCIYEKLSDEE-ADCCPVCN   66 (367)
Q Consensus        23 LtCpIC~~ll~d-P------vtl~~CgHtFC~~CI~~~l~~~~-~~~CPvCR   66 (367)
                      -.|.||++.... +      -++..|.|.||..||..|..... ...||.|+
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~  230 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENR  230 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCcccc
Confidence            679999985432 1      13447999999999999976532 23455555

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.78  E-value=0.21  Score=51.04  Aligned_cols=48  Identities=15%  Similarity=0.499  Sum_probs=38.0

Q ss_pred             cccccccccccccc---ccccccCCCCCcccHHHHHHHhhcCCC--Ccccccccc
Q 017736           19 LEACMTCPLCNSLL---REATTISLCLHTFCRKCIYEKLSDEEA--DCCPVCNID   68 (367)
Q Consensus        19 Led~LtCpIC~~ll---~dPvtl~~CgHtFC~~CI~~~l~~~~~--~~CPvCR~~   68 (367)
                      ++..|.|||=.+.-   +-|+.+ .|||..|+.-|.+..++ +.  +.||.|-..
T Consensus       331 fHSvF~CPVlKeqtsdeNPPm~L-~CGHVISkdAlnrLS~n-g~~sfKCPYCP~e  383 (394)
T KOG2817|consen  331 FHSVFICPVLKEQTSDENPPMML-ICGHVISKDALNRLSKN-GSQSFKCPYCPVE  383 (394)
T ss_pred             ccceeecccchhhccCCCCCeee-eccceecHHHHHHHhhC-CCeeeeCCCCCcc
Confidence            67788999876643   457888 89999999999986655 55  899999643

>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.59  E-value=0.27  Score=48.36  Aligned_cols=69  Identities=29%  Similarity=0.501  Sum_probs=45.2

Q ss_pred             ccccccccccccccccccCCC----CCcccHHHHHHHhhcCCC---CcccccccccCCCCCCCCCCChHHHHHHHHHCCC
Q 017736           21 ACMTCPLCNSLLREATTISLC----LHTFCRKCIYEKLSDEEA---DCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPF   93 (367)
Q Consensus        21 d~LtCpIC~~ll~dPvtl~~C----gHtFC~~CI~~~l~~~~~---~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp~   93 (367)
                      .-|.|.+|++-|.|...+ .|    .|.||.-|-.+.|+.++.   ..||.--+   |.......+=..++..|..++..
T Consensus       267 apLcCTLC~ERLEDTHFV-QCPSVp~HKFCFPCSResIK~Qg~sgevYCPSGdk---CPLvgS~vPWAFMQGEIatILag  342 (352)
T KOG3579|consen  267 APLCCTLCHERLEDTHFV-QCPSVPSHKFCFPCSRESIKQQGASGEVYCPSGDK---CPLVGSNVPWAFMQGEIATILAG  342 (352)
T ss_pred             CceeehhhhhhhccCcee-ecCCCcccceecccCHHHHHhhcCCCceeCCCCCc---CcccCCcccHHHhhhhHHHHhcc
Confidence            348999999999998887 77    699999999999987542   45664321   11122222334455566665543

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=88.74  E-value=0.21  Score=49.59  Aligned_cols=42  Identities=26%  Similarity=0.700  Sum_probs=27.6

Q ss_pred             ccccccccccccc-cccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           23 MTCPLCNSLLREA-TTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        23 LtCpIC~~ll~dP-vtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      -.|--|...+..- ..| +|.|.||.+|..-    ...+.||.|.-.+
T Consensus        91 HfCd~Cd~PI~IYGRmI-PCkHvFCl~CAr~----~~dK~Cp~C~d~V  133 (389)
T KOG2932|consen   91 HFCDRCDFPIAIYGRMI-PCKHVFCLECARS----DSDKICPLCDDRV  133 (389)
T ss_pred             EeecccCCcceeeeccc-ccchhhhhhhhhc----CccccCcCcccHH
Confidence            3566676644332 345 9999999999753    2346799996443

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.36  E-value=0.22  Score=51.12  Aligned_cols=48  Identities=21%  Similarity=0.500  Sum_probs=34.6

Q ss_pred             ccccccccccccccc--cccccCCCCCcccHHHHHHHhhc---CCC---Ccccccc
Q 017736           19 LEACMTCPLCNSLLR--EATTISLCLHTFCRKCIYEKLSD---EEA---DCCPVCN   66 (367)
Q Consensus        19 Led~LtCpIC~~ll~--dPvtl~~CgHtFC~~CI~~~l~~---~~~---~~CPvCR   66 (367)
                      +...+.|.||.+...  .-+...+|+|.||+.|+..++..   ++.   ..||.|.
T Consensus       181 ~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~  236 (445)
T KOG1814|consen  181 VNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPK  236 (445)
T ss_pred             HhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCC
Confidence            345678999998654  44555599999999999988654   222   5687764

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=88.05  E-value=0.15  Score=41.58  Aligned_cols=33  Identities=21%  Similarity=0.490  Sum_probs=26.9

Q ss_pred             ccccccccccccccc-cccccCCCCCcccHHHHH
Q 017736           19 LEACMTCPLCNSLLR-EATTISLCLHTFCRKCIY   51 (367)
Q Consensus        19 Led~LtCpIC~~ll~-dPvtl~~CgHtFC~~CI~   51 (367)
                      +.+.-.|++|...|. .++.+.+|||.|...|+.
T Consensus        75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   75 ITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             ECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence            566788999999776 556677999999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.83  E-value=0.47  Score=48.56  Aligned_cols=43  Identities=26%  Similarity=0.570  Sum_probs=28.7

Q ss_pred             cccccccccccccc---cccCCCCCcccHHHHHHHhhcC----CCCcccc
Q 017736           22 CMTCPLCNSLLREA---TTISLCLHTFCRKCIYEKLSDE----EADCCPV   64 (367)
Q Consensus        22 ~LtCpIC~~ll~dP---vtl~~CgHtFC~~CI~~~l~~~----~~~~CPv   64 (367)
                      ..+|.||..-...+   .....|+|.||..|+.+++...    ....||.
T Consensus       146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~  195 (384)
T KOG1812|consen  146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPH  195 (384)
T ss_pred             cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCC
Confidence            67899999322222   1123699999999999998742    2356765

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.18  E-value=0.91  Score=43.46  Aligned_cols=49  Identities=31%  Similarity=0.761  Sum_probs=37.9

Q ss_pred             cccccccccccccc--cccccCCCCCcccHHHHHHHhhcC------CCCccccccccc
Q 017736           20 EACMTCPLCNSLLR--EATTISLCLHTFCRKCIYEKLSDE------EADCCPVCNIDL   69 (367)
Q Consensus        20 ed~LtCpIC~~ll~--dPvtl~~CgHtFC~~CI~~~l~~~------~~~~CPvCR~~l   69 (367)
                      ...-.|.+|...+.  +.+.+ .|.|.|-..|+.++..+-      ....||.|...+
T Consensus        48 DY~pNC~LC~t~La~gdt~RL-vCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei  104 (299)
T KOG3970|consen   48 DYNPNCRLCNTPLASGDTTRL-VCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI  104 (299)
T ss_pred             CCCCCCceeCCccccCcceee-hhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence            33456999998775  66777 899999999999986542      236899998766

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=85.59  E-value=0.26  Score=56.64  Aligned_cols=51  Identities=27%  Similarity=0.556  Sum_probs=40.4

Q ss_pred             hcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           17 ETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        17 e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      ..+...+.|+||++++++--.+..|||-||..|+.-|+..  ...||+|....
T Consensus      1148 ~~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~--~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1148 MNLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA--SSRCPICKSIK 1198 (1394)
T ss_pred             HHhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH--hccCcchhhhh
Confidence            3455667999999999955555589999999999999866  35699998544

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=84.87  E-value=0.53  Score=39.86  Aligned_cols=28  Identities=32%  Similarity=0.698  Sum_probs=23.6

Q ss_pred             CCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           40 LCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        40 ~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      .|.|.|-.-||.+|+...  ..||+|....
T Consensus        80 ~CNHaFH~hCisrWlktr--~vCPLdn~eW  107 (114)
T KOG2930|consen   80 VCNHAFHFHCISRWLKTR--NVCPLDNKEW  107 (114)
T ss_pred             ecchHHHHHHHHHHHhhc--CcCCCcCcce
Confidence            499999999999999774  4599998653

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.64  E-value=0.42  Score=52.97  Aligned_cols=44  Identities=25%  Similarity=0.597  Sum_probs=36.7

Q ss_pred             ccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccc
Q 017736           19 LEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNI   67 (367)
Q Consensus        19 Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~   67 (367)
                      +-..-.|..|...|.-|+.-..|||.|-..|+.     .+...||.|+.
T Consensus       837 i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e-----~~~~~CP~C~~  880 (933)
T KOG2114|consen  837 IFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE-----DKEDKCPKCLP  880 (933)
T ss_pred             eeeeeeecccCCccccceeeeecccHHHHHhhc-----cCcccCCccch
Confidence            334468999999999999888999999999987     24467999984

>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=84.17  E-value=1.1  Score=46.67  Aligned_cols=51  Identities=25%  Similarity=0.511  Sum_probs=36.2

Q ss_pred             cccccccccccccccccccCCCCCcccHHHHHHHhhcC----CC--Ccccc--cccccC
Q 017736           20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDE----EA--DCCPV--CNIDLG   70 (367)
Q Consensus        20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~----~~--~~CPv--CR~~l~   70 (367)
                      ....+|.||...+...+....|||.||..|+..++...    ..  ..||.  |...++
T Consensus        68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~  126 (444)
T KOG1815|consen   68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVG  126 (444)
T ss_pred             CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCC
Confidence            44588999999887533444999999999999988652    11  34654  666554

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.16  E-value=0.56  Score=52.24  Aligned_cols=40  Identities=28%  Similarity=0.517  Sum_probs=32.9

Q ss_pred             hhccccccccccccc-ccccccccCCCCCcccHHHHHHHhh
Q 017736           16 RETLEACMTCPLCNS-LLREATTISLCLHTFCRKCIYEKLS   55 (367)
Q Consensus        16 ~e~Led~LtCpIC~~-ll~dPvtl~~CgHtFC~~CI~~~l~   55 (367)
                      .-.++..-.|-+|.. ++..|..+.+|||.|-+.||.+.+.
T Consensus       811 y~v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~  851 (911)
T KOG2034|consen  811 YRVLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL  851 (911)
T ss_pred             eEEecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence            344667778999998 5568998889999999999988754

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=81.95  E-value=0.93  Score=41.11  Aligned_cols=21  Identities=33%  Similarity=0.744  Sum_probs=17.8

Q ss_pred             ccccccccccccccccccCCCC
Q 017736           21 ACMTCPLCNSLLREATTISLCL   42 (367)
Q Consensus        21 d~LtCpIC~~ll~dPvtl~~Cg   42 (367)
                      ++.+||||++.-.++|.+ -|.
T Consensus         1 ed~~CpICme~PHNAVLL-lCS   21 (162)
T PF07800_consen    1 EDVTCPICMEHPHNAVLL-LCS   21 (162)
T ss_pred             CCccCceeccCCCceEEE-Eec
Confidence            467899999999999998 553

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=81.42  E-value=1.3  Score=31.38  Aligned_cols=41  Identities=20%  Similarity=0.569  Sum_probs=23.5

Q ss_pred             ccccccccccccccC--CCCCcccHHHHHHHhhcCCCCccccc
Q 017736           25 CPLCNSLLREATTIS--LCLHTFCRKCIYEKLSDEEADCCPVC   65 (367)
Q Consensus        25 CpIC~~ll~dPvtl~--~CgHtFC~~CI~~~l~~~~~~~CPvC   65 (367)
                      |.+|.++...-+.=.  .|+-.+-..|+..+++......||.|
T Consensus         1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            677888776655442  48878889999999988665579987

; PDB: 3NW0_A 2CT0_A.

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=80.39  E-value=1.8  Score=39.39  Aligned_cols=49  Identities=18%  Similarity=0.385  Sum_probs=35.9

Q ss_pred             cccccccccccccccccccCCCCC--cc---cHHHHHHHhhcCCCCcccccccccC
Q 017736           20 EACMTCPLCNSLLREATTISLCLH--TF---CRKCIYEKLSDEEADCCPVCNIDLG   70 (367)
Q Consensus        20 ed~LtCpIC~~ll~dPvtl~~CgH--tF---C~~CI~~~l~~~~~~~CPvCR~~l~   70 (367)
                      ...-.|-||.+-..+ ..- +|..  +.   -..|+.+|+...+...|+.|+..+.
T Consensus         6 ~~~~~CRIC~~~~~~-~~~-PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~   59 (162)
T PHA02825          6 LMDKCCWICKDEYDV-VTN-YCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN   59 (162)
T ss_pred             CCCCeeEecCCCCCC-ccC-CcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence            445689999987542 222 5543  22   7899999999888889999997763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	367
2h0d_A	97	Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquiti		8e-09
3rpg_B	117	Bmi1RING1B-Ubch5c Complex Structure Length = 117		1e-08
2ckl_A	108	Ring1b-Bmi1 E3 Catalytic Domain Structure Length =		1e-08
2ckl_B	165	Ring1b-Bmi1 E3 Catalytic Domain Structure Length =		4e-06
3rpg_C	121	Bmi1RING1B-Ubch5c Complex Structure Length = 121		7e-06
2h0d_B	100	Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquiti		2e-04

>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin Ligase Complex Length = 97

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 13 KVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL-GC 71
          ++K   L   + C LC     +ATTI  CLH+FC+ CI   L  E +  CP+C++ +   
Sbjct: 2  RIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL--ETSKYCPICDVQVHKT 59
Query: 72 LPVEKLRPDHNLQDIRAKIFP------FKRRK 97
           P+  +R D  LQDI  K+ P       KRR+
Sbjct: 60 RPLLNIRSDKTLQDIVYKLVPGLFKNEMKRRR 91

>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure Length = 117

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 13 KVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL-GC 71
          ++K   L   + C LC     +ATTI  CLH+FC+ CI   L  E +  CP+C++ +   
Sbjct: 6  RIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL--ETSKYCPICDVQVHKT 63
Query: 72 LPVEKLRPDHNLQDIRAKIFP------FKRRK 97
           P+  +R D  LQDI  K+ P       KRR+
Sbjct: 64 RPLLNIRSDKTLQDIVYKLVPGLFKNEMKRRR 95

>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure Length = 108

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 13 KVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL-GC 71
          ++K   L   + C LC     +ATTI  CLH+FC+ CI   L  E +  CP+C++ +   
Sbjct: 6  RIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL--ETSKYCPICDVQVHKT 63
Query: 72 LPVEKLRPDHNLQDIRAKIFP------FKRRK 97
           P+  +R D  LQDI  K+ P       KRR+
Sbjct: 64 RPLLNIRSDKTLQDIVYKLVPGLFKNEMKRRR 95

>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure Length = 165

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 12  VKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGC 71
           + V   +L + + CP+C  +L+   T   CLH FC  CI   L     + CP C   L  
Sbjct: 44  IVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKE-CPTCRKKL-- 100
Query: 72  LPVEKLRPDHNLQDIRAKIFP 92
           +    LRPD N   + +KI+P
Sbjct: 101 VSKRSLRPDPNFDALISKIYP 121

>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure Length = 121

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 12  VKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGC 71
           + V   +L + + CP+C  +L+   T   CLH FC  CI   L     + CP C   L  
Sbjct: 43  IVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKE-CPTCRKKL-- 99
Query: 72  LPVEKLRPDHNLQDIRAKIFP 92
           +    LRPD N   + +KI+P
Sbjct: 100 VSKRSLRPDPNFDALISKIYP 120

>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin Ligase Complex Length = 100

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 12  VKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGC 71
           + V   +L + + CP+C  +L+   T   CLH FC  CI   L     + CP C   L  
Sbjct: 24  IVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKE-CPTCRKKL-- 80
Query: 72  LPVEKLRPDHNLQDIRAKIF 91
           +    LRPD N   + +KI+
Sbjct: 81  VSKRSLRPDPNFDALISKIY 100

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	367
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	2e-25
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	4e-25
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	4e-15
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	2e-13
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	2e-12
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	4e-12
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	2e-10
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	3e-10
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	2e-09
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	2e-09
1z6u_A	150	NP95-like ring finger protein isoform B; structura	3e-09
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	3e-09
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	5e-09
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	3e-08
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	3e-08
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	5e-08
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	5e-08
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	9e-08
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	1e-07
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	1e-07
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	5e-07
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	9e-07
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	2e-06
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	4e-06
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	4e-06
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	9e-06
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	1e-05
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	2e-05
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	4e-05
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	4e-05
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	5e-05
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	6e-05
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	8e-05
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	1e-04
3nw0_A	238	Non-structural maintenance of chromosomes element	1e-04
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	1e-04
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	5e-04

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 98.0 bits (244), Expect = 2e-25
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 3/88 (3%)

Query: 11 VVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG 70
            ++K   L   + C LC     +ATTI  CLH+FC+ CI   L  E +  CP+C++ + 
Sbjct: 4  TTRIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL--ETSKYCPICDVQVH 61

Query: 71 -CLPVEKLRPDHNLQDIRAKIFPFKRRK 97
             P+  +R D  LQDI  K+ P   + 
Sbjct: 62 KTRPLLNIRSDKTLQDIVYKLVPGLFKN 89

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 98.9 bits (246), Expect = 4e-25
 Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 4/121 (3%)

Query: 12  VKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGC 71
           + V   +L + + CP+C  +L+   T   CLH FC  CI   L       CP C      
Sbjct: 44  IVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGN-KECPTCRKK--L 100

Query: 72  LPVEKLRPDHNLQDIRAKIFPFKRRKVQAPEVMPSISLPAKRKERSLSSLVVSTPKVPQH 131
           +    LRPD N   + +KI+P +       E + +  +     +++LS  +    K+   
Sbjct: 101 VSKRSLRPDPNFDALISKIYPSRDEYEAHQERVLA-RINKHNNQQALSHSIEEGLKIQAM 159

Query: 132 T 132
            
Sbjct: 160 N 160

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 68.6 bits (168), Expect = 4e-15
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 7/67 (10%)

Query: 13 KVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCL 72
                L   + C +C   L +ATTI+ CLHTFC+ CI        ++ CP CNI     
Sbjct: 6  SGNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHF--YYSNRCPKCNI----- 58

Query: 73 PVEKLRP 79
           V + +P
Sbjct: 59 VVHQTQP 65

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 64.4 bits (157), Expect = 2e-13
 Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 1  MDTVRTTARHVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEAD 60
          MD++  +         +T++  + C +C      A  I  C H +C  CI + LS +   
Sbjct: 1  MDSLAESRWPPGLAVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQ- 59

Query: 61 CCPVCNIDLGCLPVEKLRPDHNLQDI 86
           CP C +    +    L+ +  L ++
Sbjct: 60 -CPTCCVT---VTEPDLKNNRILDEL 81

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 60.9 bits (148), Expect = 2e-12
 Identities = 13/69 (18%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 14 VKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLP 73
           + + +   + C +C  ++ +A  I  C +++C +CI   L + +   CP C+ +   + 
Sbjct: 7  GEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND--VS 64

Query: 74 VEKLRPDHN 82
           + L    +
Sbjct: 65 PDALSGPSS 73

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 60.9 bits (148), Expect = 4e-12
 Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 5/92 (5%)

Query: 12  VKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGC 71
           +  + + +   + C +C  ++ +A  I  C +++C +CI   L + +   CP C+ +   
Sbjct: 3   LGSEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 62

Query: 72  LPVEKLRPDHNLQDIRAKIFPFKRRKVQAPEV 103
                L  +  L   R  +  FK        +
Sbjct: 63  PD--ALIANKFL---RQAVNNFKNETGYTKRL 89

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 56.5 bits (136), Expect = 2e-10
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 7/70 (10%)

Query: 17 ETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEK 76
          + LE  + C  C ++LRE   +  C H FC  C+ + +       CPVC        ++ 
Sbjct: 17 DRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTG----CPVCYT---PAWIQD 69

Query: 77 LRPDHNLQDI 86
          L+ +  L  +
Sbjct: 70 LKINRQLDSM 79

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 56.1 bits (135), Expect = 3e-10
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 4/74 (5%)

Query: 17 ETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEK 76
          E++     C +C   LR+A     C    C  CI   L+++ A  CP C      L + +
Sbjct: 17 ESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRA-QCPHCRAP---LQLRE 72

Query: 77 LRPDHNLQDIRAKI 90
          L      +++  ++
Sbjct: 73 LVNCRWAEEVTQQL 86

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 52.5 bits (126), Expect = 2e-09
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 17 ETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69
          +T+E    C  C+ +L        C H FC  C+   LS      C  C   +
Sbjct: 10 KTVEDKYKCEKCHLVLCSPKQTE-CGHRFCESCMAALLSSSS-PKCTACQESI 60

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 54.2 bits (130), Expect = 2e-09
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 17  ETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEK 76
             +E    C  C  L+    T   C H  C+ C+ ++    +   CP C  DLG      
Sbjct: 47  SKVEETFQCICCQELVFRPITTV-CQHNVCKDCL-DRSFRAQVFSCPACRYDLGRSY--A 102

Query: 77  LRPDHNLQDIRAKIFP 92
           ++ +  LQ +  ++FP
Sbjct: 103 MQVNQPLQTVLNQLFP 118

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 54.6 bits (131), Expect = 3e-09
 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 4/76 (5%)

Query: 17  ETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEK 76
           + LE    C  C  L+ +  T   C H  C+ C+       +   CP C  DLG      
Sbjct: 73  KKLEQSFMCVCCQELVYQPVTTE-CFHNVCKDCLQRSF-KAQVFSCPACRHDLG--QNYI 128

Query: 77  LRPDHNLQDIRAKIFP 92
           + P+  LQ +    FP
Sbjct: 129 MIPNEILQTLLDLFFP 144

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 53.2 bits (128), Expect = 3e-09
 Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 17 ETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADC-CPVCNIDLGCLPVE 75
            ++  + CP+C  L++E  +   C H FC+ C+ + L+ ++    CP+C      +   
Sbjct: 16 NAMQKILECPICLELIKEPVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKN---DITKR 71

Query: 76 KLRPDHNLQDI 86
           L+       +
Sbjct: 72 SLQESTRFSQL 82

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 52.6 bits (126), Expect = 5e-09
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 6/73 (8%)

Query: 24 TCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHN- 82
           C +C  +L E  T+  C HT C+ C  +   ++ + CCP C   +        R +   
Sbjct: 17 QCGICMEILVEPVTLP-CNHTLCKPCF-QSTVEKASLCCPFCRRRVSSWTRYHTRRNSLV 74

Query: 83 ---LQDIRAKIFP 92
             L  I  K +P
Sbjct: 75 NVELWTIIQKHYP 87

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58

 Score = 48.9 bits (117), Expect = 3e-08
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 17 ETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADC-CPVC 65
          E L+   +C +C   L+E   I  C H FC+ CI     D E D  CPVC
Sbjct: 10 ENLQVEASCSVCLEYLKEPVIIE-CGHNFCKACITRWWEDLERDFPCPVC 58

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79

 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 9/75 (12%)

Query: 17 ETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEAD-----CCPVCNIDLGC 71
            ++  +TCP+C  LL E  ++  C H+ CR CI     +          CPVC I    
Sbjct: 7  GNVQEEVTCPICLELLTEPLSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGI---S 62

Query: 72 LPVEKLRPDHNLQDI 86
             E L+ + +L +I
Sbjct: 63 YSFEHLQANQHLANI 77

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 48.5 bits (116), Expect = 5e-08
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 17 ETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADC-CPVC 65
            L+  + CP+C  +L++  TI  C H FC KCI +          CP+C
Sbjct: 15 NKLQEEVICPICLDILQKPVTID-CGHNFCLKCITQIGETSCGFFKCPLC 63

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 48.5 bits (116), Expect = 5e-08
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 17 ETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADC-CPVC 65
            L+  + CP+C  +L++  TI  C H FC KCI +          CP+C
Sbjct: 15 NKLQEEVICPICLDILQKPVTID-CGHNFCLKCITQIGETSCGFFKCPLC 63

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 48.4 bits (116), Expect = 9e-08
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 8/74 (10%)

Query: 17 ETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEAD----CCPVCNIDLGCL 72
            ++  +TCP+C  LL +  ++  C H+FC+ C+         D     CPVC I     
Sbjct: 14 VNVKEEVTCPICLELLTQPLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRI---SY 69

Query: 73 PVEKLRPDHNLQDI 86
            E +RP+ ++ +I
Sbjct: 70 QPENIRPNRHVANI 83

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 8/74 (10%)

Query: 17 ETLEACMTCPLCNSLLREATTISLCLHTFCRKCIY----EKLSDEEADCCPVCNIDLGCL 72
          E ++  +TCP+C  LL+E  +   C H+FCR CI        + +    CPVC +     
Sbjct: 14 EMIKEEVTCPICLELLKEPVSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRV---PY 69

Query: 73 PVEKLRPDHNLQDI 86
          P   L+P+ ++ +I
Sbjct: 70 PFGNLKPNLHVANI 83

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 17 ETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEK 76
            LE+   CP+C   LREA     C H FC+ CI + +  +    CPV N     L   +
Sbjct: 13 PPLESKYECPICLMALREAVQTP-CGHRFCKACIIKSIR-DAGHKCPVDNEI---LLENQ 67

Query: 77 LRPD 80
          L PD
Sbjct: 68 LFPD 71

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267

 Score = 49.6 bits (117), Expect = 5e-07
 Identities = 18/83 (21%), Positives = 26/83 (31%), Gaps = 8/83 (9%)

Query: 23  MTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGC---LPVEKLRP 79
           +TCP+             C H F R  I   L       CP       C   + +     
Sbjct: 182 LTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQA----ACSQVVSMRDFVR 237

Query: 80  DHNLQDIRAKIFPFKRRKVQAPE 102
           D  ++ +R KI   K  + Q   
Sbjct: 238 DPIME-LRCKIAKMKESQEQDKR 259

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 47.0 bits (111), Expect = 9e-07
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 11  VVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVC 65
           V+    + LE  + C +C+    EA T++ C H+FC  CI E +  +    CP+C
Sbjct: 53  VLSHMNDVLENELQCIICSEYFIEAVTLN-CAHSFCSYCINEWM--KRKIECPIC 104

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 44.6 bits (105), Expect = 2e-06
 Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 7/88 (7%)

Query: 23  MTCPLCNSLLREATTISLCLHTFCRKCIYEKL----SDEEADCCPVCNIDLGCLPVEKLR 78
            TCP+    +++     +C HT+    I   +      ++   CP        +    L 
Sbjct: 8   FTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLI 67

Query: 79  PDHNLQDIRAKIFPFKRRKVQAPEVMPS 106
            D  L   R  I    +++ +  E  PS
Sbjct: 68  QDEAL---RRAIENHNKKRHRHSESGPS 92

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 42.7 bits (101), Expect = 4e-06
 Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 6/43 (13%)

Query: 23 MTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVC 65
          + C  C +  +    +  CLHT C  C+     +     CP+C
Sbjct: 7  LRCQQCQAEAKCPKLLP-CLHTLCSGCL-----EASGMQCPIC 43

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 44.5 bits (105), Expect = 4e-06
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 17 ETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCN 66
                ++C +C  +L +    S C H FCR CI  +        CP C 
Sbjct: 18 AHFVKSISCQICEHILADPVETS-CKHLFCRICI-LRCLKVMGSYCPSCR 65

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 44.0 bits (103), Expect = 9e-06
 Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 8/76 (10%)

Query: 17 ETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVC------NIDLG 70
            LEA   C  C ++LR       C H +C  C+   +       C  C         + 
Sbjct: 26 TKLEAKYLCSACRNVLRRPFQAQ-CGHRYCSFCL-ASILSSGPQNCAACVHEGIYEEGIS 83

Query: 71 CLPVEKLRPDHNLQDI 86
           L      PD+  +  
Sbjct: 84 ILESSSAFPDNAARRE 99

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 44.7 bits (105), Expect = 1e-05
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 17 ETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEK 76
            LE+   CP+C   LREA     C H FC+ CI  K   +    CPV N     L   +
Sbjct: 13 PPLESKYECPICLMALREAVQTP-CGHRFCKACI-IKSIRDAGHKCPVDNE---ILLENQ 67

Query: 77 LRPDHNLQDIRAKIF 91
          L PD+  +     + 
Sbjct: 68 LFPDNFAKREILSLM 82

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 6/65 (9%)

Query: 15 KRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPV 74
                    C +C        ++  C H FC  C+           C +C  +   +P 
Sbjct: 8  NTAPSLTVPECAICLQTCVHPVSLP-CKHVFCYLCVKGAS--WLGKRCALCRQE---IPE 61

Query: 75 EKLRP 79
          + L  
Sbjct: 62 DFLDS 66

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 40.2 bits (94), Expect = 4e-05
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 8/56 (14%)

Query: 20 EACMTCPLCNSLLREAT------TISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69
             ++CP+C     E          + C H FC +C+ + L  + A+ CP C   +
Sbjct: 8  SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL--KNANTCPTCRKKI 61

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 6/75 (8%)

Query: 17 ETLEACMTCPLCNSLLREATTI--SL-CLHTFCRKCIYEKLSDEEADC--CPVCNIDLGC 71
          + L   + CP+C     E       L C HT CR+C+ EKL     +   CP C+     
Sbjct: 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCL-EKLLASSINGVRCPFCSKITRI 68

Query: 72 LPVEKLRPDHNLQDI 86
            + +L  +  +   
Sbjct: 69 TSLTQLTDNLTVLKS 83

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 39.8 bits (93), Expect = 5e-05
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 8/50 (16%)

Query: 23 MTCPLCNSLLREAT------TISLCLHTFCRKCIYEKLSDEEADCCPVCN 66
          ++CP+C     E          + C H FC +C+ + L  + A+ CP C 
Sbjct: 4  VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL--KNANTCPTCR 51

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 40.2 bits (94), Expect = 6e-05
 Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 3/43 (6%)

Query: 24 TCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCN 66
           C +C    +       C H FC  C  E         C +C+
Sbjct: 17 RCFICRQAFQNPVVTK-CRHYFCESCALEHF--RATPRCYICD 56

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 39.3 bits (92), Expect = 8e-05
 Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVC 65
               CP+C       +    CLH FC  CI   +   +   CP+C
Sbjct: 3  TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWI--RQNPTCPLC 46

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 2/50 (4%)

Query: 17  ETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCN 66
           E       C +C    ++   I  C H  C  C+     + E   CP C 
Sbjct: 327 EMGSTFQLCKICAENDKDVK-IEPCGHLMCTSCLTS-WQESEGQGCPFCR 374

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 13/61 (21%), Positives = 22/61 (36%)

Query: 20  EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRP 79
           +A   C +C+SLL +  +   C       C+ +         CP CN        +   P
Sbjct: 178 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKVFDP 237

Query: 80  D 80
           +
Sbjct: 238 E 238

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 11/43 (25%), Positives = 17/43 (39%)

Query: 24 TCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCN 66
           C +C+SLL +  +   C       C+ +         CP CN
Sbjct: 17 ICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCN 59

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 37.2 bits (86), Expect = 5e-04
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 8/56 (14%)

Query: 20 EACMTCPLCNSLLREAT------TISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69
             ++CP+C     E          + C H FC +C+ + L  + A+ CP C   +
Sbjct: 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL--KNANTCPTCRKKI 66

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	367
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.54
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.54
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.51
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.48
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.48
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.47
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.47
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.47
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.46
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.45
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.43
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.4
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.4
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.37
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.37
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.37
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.36
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.34
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.33
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.33
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	99.33
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.29
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.28
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.27
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	99.25
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.25
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.24
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.24
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.23
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.23
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.19
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.17
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.14
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	99.1
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.1
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.07
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.07
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.05
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	99.0
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	98.98
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.96
2ect_A	78	Ring finger protein 126; metal binding protein, st	98.95
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	98.95
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	98.91
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	98.9
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	98.89
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	98.88
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	98.85
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.85
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	98.85
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.85
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.84
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	98.82
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.76
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.65
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.62
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.62
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.61
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.56
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.53
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.41
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	98.41
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.32
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.27
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.26
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	98.17
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	98.14
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	97.77
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.48
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	97.04
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	96.67
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	96.61
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	96.23
3nw0_A	238	Non-structural maintenance of chromosomes element	95.82
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	94.57
4fo9_A	360	E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom	94.04
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	90.26
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	86.39

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.54  E-value=3.5e-15  Score=118.95  Aligned_cols=75  Identities=19%  Similarity=0.545  Sum_probs=65.1

Q ss_pred             hhhcccccccccccccccccccccCC-CCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCC
Q 017736           15 KRETLEACMTCPLCNSLLREATTISL-CLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFP   92 (367)
Q Consensus        15 ~~e~Led~LtCpIC~~ll~dPvtl~~-CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp   92 (367)
                      ..+.+.+.+.|+||+++|.+|+++ + |||+||..||..|+...+...||+||..+  .....+.+|..+.++++.|..
T Consensus         6 ~~~~~~~~~~C~IC~~~~~~p~~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~--~~~~~~~~n~~l~~~i~~~~~   81 (92)
T 3ztg_A            6 EDDPIPDELLCLICKDIMTDAVVI-PCCGNSYCDECIRTALLESDEHTCPTCHQND--VSPDALIANKFLRQAVNNFKN   81 (92)
T ss_dssp             SCCCCCTTTEETTTTEECSSCEEC-TTTCCEECHHHHHHHHHHCTTCCCTTTCCSS--CCTTSCEECHHHHHHHHHHHH
T ss_pred             ccccCCcCCCCCCCChhhcCceEC-CCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC--CCccccCcCHHHHHHHHHHHH
Confidence            345688999999999999999999 7 99999999999999765557899999876  345678999999999999854

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.54  E-value=4.8e-15  Score=124.82  Aligned_cols=76  Identities=25%  Similarity=0.599  Sum_probs=66.3

Q ss_pred             hhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCCCch
Q 017736           16 RETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPFKR   95 (367)
Q Consensus        16 ~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp~~~   95 (367)
                      ...+.+.+.|+||+++|.+|+++ +|||+||..||..|+.. ....||+||..+.  ....+.+|..+.++++.|+|...
T Consensus        46 ~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~--~~~~~~~n~~l~~~i~~~~p~~~  121 (124)
T 3fl2_A           46 LSKVEETFQCICCQELVFRPITT-VCQHNVCKDCLDRSFRA-QVFSCPACRYDLG--RSYAMQVNQPLQTVLNQLFPGYG  121 (124)
T ss_dssp             HHHHHHHTBCTTTSSBCSSEEEC-TTSCEEEHHHHHHHHHT-TCCBCTTTCCBCC--TTCCCCCCHHHHHHHHHHSTTTT
T ss_pred             HHhCccCCCCCcCChHHcCcEEe-eCCCcccHHHHHHHHhH-CcCCCCCCCccCC--CCCCCCCCHHHHHHHHHHccccc
Confidence            46678899999999999999999 99999999999999974 4458999999882  33678999999999999999754

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.51  E-value=5.8e-15  Score=114.22  Aligned_cols=70  Identities=20%  Similarity=0.333  Sum_probs=61.7

Q ss_pred             hcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHC
Q 017736           17 ETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIF   91 (367)
Q Consensus        17 e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klf   91 (367)
                      ..+.+.+.|+||+++|.+|+++ +|||+||+.||.+|+.. +...||+|+..+   ....+.+|..|.++++.|.
T Consensus         3 ~~~~~~~~C~IC~~~~~~Pv~~-~CgH~fc~~Ci~~~~~~-~~~~CP~C~~~~---~~~~l~~n~~l~~~i~~~~   72 (78)
T 1t1h_A            3 PEFPEYFRCPISLELMKDPVIV-STGQTYERSSIQKWLDA-GHKTCPKSQETL---LHAGLTPNYVLKSLIALWC   72 (78)
T ss_dssp             CCCSSSSSCTTTSCCCSSEEEE-TTTEEEEHHHHHHHHTT-TCCBCTTTCCBC---SSCCCEECTTTHHHHHHHH
T ss_pred             cCCcccCCCCCccccccCCEEc-CCCCeecHHHHHHHHHH-CcCCCCCCcCCC---ChhhCccCHHHHHHHHHHH
Confidence            3567899999999999999999 89999999999999964 356899999887   4567889999999999885

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.48  E-value=1.6e-14  Score=116.93  Aligned_cols=87  Identities=22%  Similarity=0.454  Sum_probs=65.9

Q ss_pred             CchHhhhhhhhhhhhhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCC
Q 017736            1 MDTVRTTARHVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPD   80 (367)
Q Consensus         1 m~~~~~ma~~~v~v~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n   80 (367)
                      |+.+............+.+.+.+.|+||++.|.+|+++.+|||+||..||..|+..  ...||+||..+   ....+.+|
T Consensus         1 Ma~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~---~~~~l~~n   75 (99)
T 2y43_A            1 MDSLAESRWPPGLAVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY--KTQCPTCCVTV---TEPDLKNN   75 (99)
T ss_dssp             -------CCCGGGGGGHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT--CCBCTTTCCBC---CGGGCEEC
T ss_pred             CCccccccCCcchhHHHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC--CCCCCCCCCcC---ChhhCCcC
Confidence            33444333333334556778899999999999999988689999999999999975  36799999887   44678899


Q ss_pred             hHHHHHHHHHCC
Q 017736           81 HNLQDIRAKIFP   92 (367)
Q Consensus        81 ~~L~~li~klfp   92 (367)
                      ..+.++++.+..
T Consensus        76 ~~l~~~i~~~~~   87 (99)
T 2y43_A           76 RILDELVKSLNF   87 (99)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998843

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.48  E-value=1.6e-14  Score=118.82  Aligned_cols=83  Identities=35%  Similarity=0.729  Sum_probs=68.6

Q ss_pred             hhhhhhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCC-CCCCCCCChHHHHHHHH
Q 017736           11 VVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCL-PVEKLRPDHNLQDIRAK   89 (367)
Q Consensus        11 ~v~v~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~-~~~~lr~n~~L~~li~k   89 (367)
                      ..++..+.+.+.+.|+||+++|.+|+++.+|||+||..||..|+..  ...||+|+..+... +...+.+|..+.++++.
T Consensus         4 ~~~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~   81 (108)
T 2ckl_A            4 TTRIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET--SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYK   81 (108)
T ss_dssp             --CEEHHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS--CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHH
T ss_pred             ccccchhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh--CCcCcCCCccccccCcccccCcCHHHHHHHHH
Confidence            3456778899999999999999999997799999999999999965  36799999887321 12367899999999999


Q ss_pred             HCCCch
Q 017736           90 IFPFKR   95 (367)
Q Consensus        90 lfp~~~   95 (367)
                      +++...
T Consensus        82 ~~~~~~   87 (108)
T 2ckl_A           82 LVPGLF   87 (108)
T ss_dssp             HSTTHH
T ss_pred             HhhhHH
Confidence            998654

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.47  E-value=4.3e-14  Score=123.81  Aligned_cols=76  Identities=28%  Similarity=0.593  Sum_probs=65.5

Q ss_pred             hhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCCCc
Q 017736           15 KRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPFK   94 (367)
Q Consensus        15 ~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp~~   94 (367)
                      ..+.+.+.+.|+||+++|.+|+++ +|||+||..||..|+.. ....||+||..+.  ....+.+|..++++++.|++..
T Consensus        71 ~~~~l~~~~~C~IC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~--~~~~l~~n~~l~~lv~~~~p~~  146 (150)
T 1z6u_A           71 FLKKLEQSFMCVCCQELVYQPVTT-ECFHNVCKDCLQRSFKA-QVFSCPACRHDLG--QNYIMIPNEILQTLLDLFFPGY  146 (150)
T ss_dssp             HHHHHHHHTBCTTTSSBCSSEEEC-TTSCEEEHHHHHHHHHT-TCCBCTTTCCBCC--TTCCCCBCHHHHHHHHHHSTTT
T ss_pred             HHHhCccCCEeecCChhhcCCEEc-CCCCchhHHHHHHHHHh-CCCcCCCCCccCC--CCCCCCCCHHHHHHHHHHhhHh
Confidence            445677889999999999999998 99999999999999975 4457999999883  2237899999999999999864

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.47  E-value=2.2e-14  Score=117.84  Aligned_cols=74  Identities=16%  Similarity=0.159  Sum_probs=64.6

Q ss_pred             hhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCCCc
Q 017736           15 KRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPFK   94 (367)
Q Consensus        15 ~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp~~   94 (367)
                      ....+.++|.||||+++|.+||++ +|||+||+.||..|+..  ...||+|+..+   ....+.+|..|.+++..|...+
T Consensus        22 ~~~~~p~~~~CpI~~~~m~dPV~~-~cGhtf~r~~I~~~l~~--~~~cP~~~~~l---~~~~L~pn~~Lk~~I~~~~~~~   95 (100)
T 2kre_A           22 DYSDAPDEFRDPLMDTLMTDPVRL-PSGTIMDRSIILRHLLN--SPTDPFNRQTL---TESMLEPVPELKEQIQAWMREK   95 (100)
T ss_dssp             SCSSCSTTTBCTTTCSBCSSEEEE-TTTEEEEHHHHHHHTTS--CSBCSSSCCBC---CTTSSEECHHHHHHHHHHHHTT
T ss_pred             hhccCcHhhCCcCccCcccCCeEC-CCCCEEchHHHHHHHHc--CCCCCCCCCCC---ChhhceECHHHHHHHHHHHHHh
Confidence            344577899999999999999999 89999999999999974  46799999888   5678999999999999996543

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.47  E-value=2.3e-14  Score=114.10  Aligned_cols=73  Identities=15%  Similarity=0.135  Sum_probs=63.9

Q ss_pred             hhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCCC
Q 017736           15 KRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPF   93 (367)
Q Consensus        15 ~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp~   93 (367)
                      ....+.++|.||||+++|.+||++ +|||+||+.||..|+..  ...||+|+..+   ....+.+|..|.+++..|...
T Consensus         7 ~~~~~p~~~~CpI~~~~m~dPV~~-~cGhtf~r~~I~~~l~~--~~~cP~~~~~l---~~~~l~pn~~L~~~i~~~~~~   79 (85)
T 2kr4_A            7 DYSDAPDEFRDPLMDTLMTDPVRL-PSGTVMDRSIILRHLLN--SPTDPFNRQML---TESMLEPVPELKEQIQAWMRE   79 (85)
T ss_dssp             CCTTCCTTTBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHH--CSBCTTTCCBC---CGGGCEECHHHHHHHHHHHHH
T ss_pred             hhhcCchheECcccCchhcCCeEC-CCCCEECHHHHHHHHhc--CCCCCCCcCCC---ChHhcchHHHHHHHHHHHHHH
Confidence            345578899999999999999999 89999999999999975  46799999887   556899999999999998543

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.46  E-value=4.1e-14  Score=115.83  Aligned_cols=72  Identities=15%  Similarity=0.205  Sum_probs=63.4

Q ss_pred             hhcccccccccccccccccccccCCCC-CcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCCC
Q 017736           16 RETLEACMTCPLCNSLLREATTISLCL-HTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPF   93 (367)
Q Consensus        16 ~e~Led~LtCpIC~~ll~dPvtl~~Cg-HtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp~   93 (367)
                      ...+.++|.||||+++|.+||++ +|| |+||+.||.+|+..  ...||+|+..+   ....+.+|..|.++|..|...
T Consensus        16 ~~~~p~~~~CpI~~~~m~dPV~~-~cG~htf~r~cI~~~l~~--~~~cP~~~~~l---~~~~L~pn~~Lk~~I~~~~~~   88 (98)
T 1wgm_A           16 YADACDEFLDPIMSTLMCDPVVL-PSSRVTVDRSTIARHLLS--DQTDPFNRSPL---TMDQIRPNTELKEKIQRWLAE   88 (98)
T ss_dssp             CCSCCTTTBCTTTCSBCSSEEEC-TTTCCEEEHHHHHHHTTT--SCBCTTTCSBC---CTTTSEECHHHHHHHHHHHHH
T ss_pred             hhcCcHhcCCcCccccccCCeEC-CCCCeEECHHHHHHHHHh--CCCCCCCCCCC---ChhhceEcHHHHHHHHHHHHH
Confidence            34577899999999999999999 899 99999999999975  45799999888   567899999999999998543

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=3.3e-14  Score=115.04  Aligned_cols=74  Identities=18%  Similarity=0.368  Sum_probs=62.6

Q ss_pred             ccccccccccccccccccccCCCCCcccHHHHHHHhhcC----CCCcccc--cccc-cCCCCCCCCCCChHHHHHHHHHC
Q 017736           19 LEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDE----EADCCPV--CNID-LGCLPVEKLRPDHNLQDIRAKIF   91 (367)
Q Consensus        19 Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~----~~~~CPv--CR~~-l~~~~~~~lr~n~~L~~li~klf   91 (367)
                      ..+.|.||||+++|.+||++..|||+||+.||..||...    +...||+  |+.. +   ....+.+|..|..+|..|.
T Consensus         4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l---~~~~L~pn~~L~~~I~~~~   80 (94)
T 2yu4_A            4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDI---RKSDLIQDEALRRAIENHN   80 (94)
T ss_dssp             CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCB---CGGGEEECHHHHHHHHHHH
T ss_pred             CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccccc---CHhhCcCCHHHHHHHHHHH
Confidence            467899999999999999993499999999999999864    2468999  8865 5   5678999999999999996


Q ss_pred             CCch
Q 017736           92 PFKR   95 (367)
Q Consensus        92 p~~~   95 (367)
                      ....
T Consensus        81 ~~~~   84 (94)
T 2yu4_A           81 KKRH   84 (94)
T ss_dssp             TTCC
T ss_pred             HHhc
Confidence            5544

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.43  E-value=2.7e-14  Score=125.79  Aligned_cols=84  Identities=32%  Similarity=0.700  Sum_probs=62.8

Q ss_pred             hhhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCCC
Q 017736           14 VKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPF   93 (367)
Q Consensus        14 v~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp~   93 (367)
                      +....+.+.+.|+||+++|.+|+++.+|||+||..||..|+.. +...||+||..+.  ....+.+|..+.+++..+++.
T Consensus        46 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~--~~~~l~~~~~l~~~i~~~~~~  122 (165)
T 2ckl_B           46 VSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRS-GNKECPTCRKKLV--SKRSLRPDPNFDALISKIYPS  122 (165)
T ss_dssp             ----CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHT-TCCBCTTTCCBCC--SGGGEEECHHHHHHHHHHC--
T ss_pred             cchhhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHh-CcCCCCCCCCcCC--CcccCCcCHHHHHHHHHHHcc
Confidence            4455677889999999999999988799999999999999975 3567999998872  445688999999999999987


Q ss_pred             chhcccC
Q 017736           94 KRRKVQA  100 (367)
Q Consensus        94 ~~~k~~~  100 (367)
                      ....+..
T Consensus       123 ~~~~~~~  129 (165)
T 2ckl_B          123 RDEYEAH  129 (165)
T ss_dssp             -------
T ss_pred             hhHHHHH
Confidence            6544333

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.40  E-value=9.1e-14  Score=116.11  Aligned_cols=73  Identities=25%  Similarity=0.599  Sum_probs=63.4

Q ss_pred             hhhhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCC
Q 017736           13 KVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFP   92 (367)
Q Consensus        13 ~v~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp   92 (367)
                      ....+.+.+.+.|+||+++|.+|+++.+|||+||..||..|+.    ..||+|+..+   ....+.+|..+.+++..+..
T Consensus        13 ~~~~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~----~~CP~Cr~~~---~~~~~~~n~~l~~l~~~~~~   85 (117)
T 1jm7_B           13 RAALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG----TGCPVCYTPA---WIQDLKINRQLDSMIQLCSK   85 (117)
T ss_dssp             HHHHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT----TBCSSSCCBC---SCSSCCCCHHHHHHHHHHHH
T ss_pred             HHHHHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc----CCCcCCCCcC---ccccccccHHHHHHHHHHHH
Confidence            3455678899999999999999999878999999999999985    5799999887   56778999999999998743

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.40  E-value=9.6e-14  Score=113.17  Aligned_cols=75  Identities=21%  Similarity=0.472  Sum_probs=61.6

Q ss_pred             hhhhhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHH
Q 017736           12 VKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKI   90 (367)
Q Consensus        12 v~v~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~kl   90 (367)
                      .......+.+.+.|+||+++|.+|+++..|||+||..||..|+.... ..||+||..+   ....+..+..+.++++.+
T Consensus        12 ~~~~~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~-~~CP~Cr~~~---~~~~l~~~~~~~~i~~~~   86 (100)
T 3lrq_A           12 DEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQR-AQCPHCRAPL---QLRELVNCRWAEEVTQQL   86 (100)
T ss_dssp             HHHHHHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTC-SBCTTTCCBC---CGGGCEECTTHHHHHHHH
T ss_pred             cccccccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCc-CCCCCCCCcC---CHHHhHhhHHHHHHHHHH
Confidence            34566778999999999999999999339999999999999998743 5799999887   456677777777776665

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.37  E-value=2.2e-13  Score=111.78  Aligned_cols=86  Identities=22%  Similarity=0.583  Sum_probs=64.3

Q ss_pred             CchHhhhhhhhhhhhhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcC-CCCcccccccccCCCCCCCCCC
Q 017736            1 MDTVRTTARHVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDE-EADCCPVCNIDLGCLPVEKLRP   79 (367)
Q Consensus         1 m~~~~~ma~~~v~v~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~-~~~~CPvCR~~l~~~~~~~lr~   79 (367)
                      ||+...- ...+....+.+.+.+.|+||++.|.+|+++ +|||+||..||..|+... +...||+||..+   ....+..
T Consensus         1 Mdls~~~-~~~~~~~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~---~~~~~~~   75 (112)
T 1jm7_A            1 MDLSALR-VEEVQNVINAMQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI---TKRSLQE   75 (112)
T ss_dssp             CCGGGSS-HHHHHHHHHHHHHHTSCSSSCCCCSSCCBC-TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCC---CTTTCBC
T ss_pred             CCccHHH-HHHHHHHHHhccCCCCCcccChhhcCeEEC-CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcC---CHhhcCc
Confidence            5544432 223344556788899999999999999998 999999999999999763 235799999887   4456666


Q ss_pred             ChHHHHHHHHHC
Q 017736           80 DHNLQDIRAKIF   91 (367)
Q Consensus        80 n~~L~~li~klf   91 (367)
                      +..+.++++.+.
T Consensus        76 ~~~l~~~~~~~~   87 (112)
T 1jm7_A           76 STRFSQLVEELL   87 (112)
T ss_dssp             CCSSSHHHHHHH
T ss_pred             cHHHHHHHHHHH
Confidence            666666666654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.37  E-value=1.9e-13  Score=127.72  Aligned_cols=71  Identities=21%  Similarity=0.238  Sum_probs=62.3

Q ss_pred             cccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCCC
Q 017736           18 TLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPF   93 (367)
Q Consensus        18 ~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp~   93 (367)
                      .+.+.|.||||+++|.+||++ +|||+||+.||.+|+...+ ..||+|+.++   ....+.+|..|.++|+.|...
T Consensus       204 ~~~~~~~c~i~~~~~~dPv~~-~~gh~f~~~~i~~~~~~~~-~~cP~~~~~~---~~~~l~~n~~l~~~i~~~~~~  274 (281)
T 2c2l_A          204 DIPDYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQRVG-HFNPVTRSPL---TQEQLIPNLAMKEVIDAFISE  274 (281)
T ss_dssp             CCCSTTBCTTTCSBCSSEEEC-SSCCEEETTHHHHHHHHTC-SSCTTTCCCC---CGGGCEECHHHHHHHHHHHTT
T ss_pred             CCCcccCCcCcCCHhcCCeEC-CCCCEECHHHHHHHHHHCC-CCCcCCCCCC---chhcCcccHHHHHHHHHHHHH
Confidence            456799999999999999999 8999999999999997643 3499999887   556799999999999999654

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.37  E-value=2.4e-14  Score=110.48  Aligned_cols=65  Identities=32%  Similarity=0.752  Sum_probs=53.0

Q ss_pred             hhcccccccccccccccccccccCCCCCcccHHHHHHHhhcC-----CCCcccccccccCCCCCCCCCCChHHH
Q 017736           16 RETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDE-----EADCCPVCNIDLGCLPVEKLRPDHNLQ   84 (367)
Q Consensus        16 ~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~-----~~~~CPvCR~~l~~~~~~~lr~n~~L~   84 (367)
                      .+.+.+.+.|+||++.|.+|+++ +|||+||..||.+|+...     ....||+||..+   ....+.+|..+.
T Consensus         6 ~~~~~~~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~---~~~~l~~n~~l~   75 (79)
T 2egp_A            6 SGNVQEEVTCPICLELLTEPLSL-DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY---SFEHLQANQHLA   75 (79)
T ss_dssp             SCCCCCCCEETTTTEECSSCCCC-SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCC---CSSGGGTCSSSC
T ss_pred             HhhcccCCCCcCCCcccCCeeEC-CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcC---CHhhCCcCHHHH
Confidence            45678899999999999999998 999999999999998762     256899999887   345566665443

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.36  E-value=6.4e-14  Score=116.30  Aligned_cols=78  Identities=23%  Similarity=0.484  Sum_probs=65.0

Q ss_pred             hhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCC----CCCCCCCCChHHHHHHHHHC
Q 017736           16 RETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGC----LPVEKLRPDHNLQDIRAKIF   91 (367)
Q Consensus        16 ~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~----~~~~~lr~n~~L~~li~klf   91 (367)
                      ...+.+++.|+||+++|.+|+++ +|||+||..||..|+.. +...||+||..+..    .....+..|..+.+++.+++
T Consensus         9 ~~~~~~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~   86 (115)
T 3l11_A            9 AIPSLSECQCGICMEILVEPVTL-PCNHTLCKPCFQSTVEK-ASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY   86 (115)
T ss_dssp             CCCCHHHHBCTTTCSBCSSCEEC-TTSCEECHHHHCCCCCT-TTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred             ccCCCCCCCCccCCcccCceeEc-CCCCHHhHHHHHHHHhH-CcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence            34567889999999999999999 99999999999999865 34689999987731    12366778999999999999


Q ss_pred             CCch
Q 017736           92 PFKR   95 (367)
Q Consensus        92 p~~~   95 (367)
                      |...
T Consensus        87 p~~~   90 (115)
T 3l11_A           87 PREC   90 (115)
T ss_dssp             HHHH
T ss_pred             CHHH
Confidence            8654

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.34  E-value=5.2e-13  Score=102.84  Aligned_cols=54  Identities=22%  Similarity=0.723  Sum_probs=47.7

Q ss_pred             hhhcccccccccccccccccccccCC-CCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           15 KRETLEACMTCPLCNSLLREATTISL-CLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        15 ~~e~Led~LtCpIC~~ll~dPvtl~~-CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      ..+.+.+.+.|+||+++|.+|+++ + |||+||..||.+|+...+...||+||..+
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~p~~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~   62 (74)
T 2yur_A            8 EDDPIPDELLCLICKDIMTDAVVI-PCCGNSYCDECIRTALLESDEHTCPTCHQND   62 (74)
T ss_dssp             CCCCSCGGGSCSSSCCCCTTCEEC-SSSCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred             ccccCCCCCCCcCCChHHhCCeEc-CCCCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence            346678899999999999999998 7 99999999999999875556899999865

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.33  E-value=1.1e-13  Score=107.60  Aligned_cols=67  Identities=33%  Similarity=0.792  Sum_probs=54.4

Q ss_pred             hhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcC----CCCcccccccccCCCCCCCCCCChHHHH
Q 017736           15 KRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDE----EADCCPVCNIDLGCLPVEKLRPDHNLQD   85 (367)
Q Consensus        15 ~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~----~~~~CPvCR~~l~~~~~~~lr~n~~L~~   85 (367)
                      ..+.+.+.+.|+||++.|.+|+.+ +|||+||..||..|+...    +...||+||..+   ....+.+|..+++
T Consensus        12 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~---~~~~~~~n~~l~~   82 (85)
T 2ecw_A           12 VLEMIKEEVTCPICLELLKEPVSA-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY---PFGNLKPNLHVAN   82 (85)
T ss_dssp             CCCCCCTTTSCTTTCSCCSSCEEC-TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCC---CTTCCEECSCCCS
T ss_pred             HHHhCccCCCCcCCChhhCcceeC-CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcC---CHHhCCcCHHHHH
Confidence            446678899999999999999988 899999999999999873    257899999887   4455666655443

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=1.4e-13  Score=106.86  Aligned_cols=67  Identities=28%  Similarity=0.741  Sum_probs=54.6

Q ss_pred             hhhcccccccccccccccccccccCCCCCcccHHHHHHHhhc----CCCCcccccccccCCCCCCCCCCChHHHH
Q 017736           15 KRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSD----EEADCCPVCNIDLGCLPVEKLRPDHNLQD   85 (367)
Q Consensus        15 ~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~----~~~~~CPvCR~~l~~~~~~~lr~n~~L~~   85 (367)
                      ..+.+.+.+.|+||++.+.+|+.+ +|||+||..||..|+..    .+...||+||..+   ....+.+|..+.+
T Consensus        12 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~---~~~~~~~n~~l~~   82 (85)
T 2ecv_A           12 ILVNVKEEVTCPICLELLTQPLSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISY---QPENIRPNRHVAN   82 (85)
T ss_dssp             CCCCCCCCCCCTTTCSCCSSCBCC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSS---CSSSCCCSCCCCC
T ss_pred             HHHHccCCCCCCCCCcccCCceeC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCcc---CHHhcCccHHHHH
Confidence            346678899999999999999998 99999999999999876    2357899999887   4456666655443

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=99.33  E-value=6.4e-13  Score=120.13  Aligned_cols=71  Identities=20%  Similarity=0.252  Sum_probs=63.1

Q ss_pred             hhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHC
Q 017736           16 RETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIF   91 (367)
Q Consensus        16 ~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klf   91 (367)
                      ...+.+.|.||||+++|.+||++ +|||+||+.||..|+...+. .||+|+.++   ....+.+|..|.+++..|.
T Consensus       100 ~~~ip~~f~CPI~~elm~DPV~~-~~Ghtfer~~I~~~l~~~~~-tcP~t~~~l---~~~~L~pN~~Lk~~Ie~~~  170 (179)
T 2f42_A          100 KREIPDYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQRVGH-FDPVTRSPL---TQDQLIPNLAMKEVIDAFI  170 (179)
T ss_dssp             CCCCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHTCS-BCTTTCCBC---CGGGCEECHHHHHHHHHHH
T ss_pred             ccCCcHhhcccCccccCCCCeEC-CCCCEECHHHHHHHHHhCCC-CCCCCcCCC---ChhhCcchHHHHHHHHHHH
Confidence            45678899999999999999999 99999999999999986443 699999888   5568999999999999885

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.29  E-value=1.3e-12  Score=112.21  Aligned_cols=68  Identities=29%  Similarity=0.610  Sum_probs=53.1

Q ss_pred             hhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHC
Q 017736           16 RETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIF   91 (367)
Q Consensus        16 ~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klf   91 (367)
                      .+.++++++|+||+++|.+|+++ +|||+||..||..|+..  ...||+||..+.     ....+..+..++..++
T Consensus        47 ~~~~~~~~~C~iC~~~~~~~~~~-~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~-----~~~~~~~~~~~i~~~~  114 (138)
T 4ayc_A           47 NDVLENELQCIICSEYFIEAVTL-NCAHSFCSYCINEWMKR--KIECPICRKDIK-----SKTYSLVLDNCINKMV  114 (138)
T ss_dssp             HHHHHHHSBCTTTCSBCSSEEEE-TTSCEEEHHHHHHHTTT--CSBCTTTCCBCC-----CEEECHHHHHHHHHHH
T ss_pred             HHhccccCCCcccCcccCCceEC-CCCCCccHHHHHHHHHc--CCcCCCCCCcCC-----CCCCccchhHHHHHHH
Confidence            34567789999999999999999 99999999999999965  457999998772     1223555556665554

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=2.1e-12  Score=98.67  Aligned_cols=54  Identities=39%  Similarity=0.844  Sum_probs=47.8

Q ss_pred             hhhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           14 VKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        14 v~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      ...+.+++.+.|+||++.|.+|+++..|||+||..||.+|+..  ...||+||..+
T Consensus         7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~   60 (72)
T 2djb_A            7 GNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY--SNRCPKCNIVV   60 (72)
T ss_dssp             CCCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH--CSSCTTTCCCC
T ss_pred             hhHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc--CCcCCCcCccc
Confidence            3456788999999999999999997799999999999999976  45799999887

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=1.7e-12  Score=101.28  Aligned_cols=61  Identities=25%  Similarity=0.605  Sum_probs=50.5

Q ss_pred             hcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHH
Q 017736           17 ETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQ   84 (367)
Q Consensus        17 e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~   84 (367)
                      +...+.+.|+||++.|.+|+++ +|||+||..||.+|+..  ...||+||..+.    ..+.++..+.
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~----~~~~~~~~l~   70 (81)
T 2csy_A           10 EEEEIPFRCFICRQAFQNPVVT-KCRHYFCESCALEHFRA--TPRCYICDQPTG----GIFNPAKELM   70 (81)
T ss_dssp             SCCCCCSBCSSSCSBCCSEEEC-TTSCEEEHHHHHHHHHH--CSBCSSSCCBCC----SCCEECHHHH
T ss_pred             ccCCCCCCCcCCCchhcCeeEc-cCCCHhHHHHHHHHHHC--CCcCCCcCcccc----ccCCcHHHHH
Confidence            4567789999999999999988 99999999999999965  457999998872    4566664443

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=99.25  E-value=1.7e-12  Score=123.45  Aligned_cols=74  Identities=19%  Similarity=0.260  Sum_probs=64.6

Q ss_pred             hhhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccc--cccccCCCCCCCCCCChHHHHHHHHH
Q 017736           14 VKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPV--CNIDLGCLPVEKLRPDHNLQDIRAKI   90 (367)
Q Consensus        14 v~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPv--CR~~l~~~~~~~lr~n~~L~~li~kl   90 (367)
                      +........++||||+++|.+||++..|||+||+.||.+|+...+...||+  |+..+   ....+.+|..|.++++.+
T Consensus       173 I~v~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l---~~~dL~pN~~L~~lve~~  248 (267)
T 3htk_C          173 LQIEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVV---SMRDFVRDPIMELRCKIA  248 (267)
T ss_dssp             CCCCSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEE---CGGGEEECHHHHHHHHHH
T ss_pred             ceecCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcC---chhhCCcCHHHHHHHHHH
Confidence            344557889999999999999998658999999999999998755678999  99877   677899999999999886

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=3.9e-12  Score=96.74  Aligned_cols=54  Identities=31%  Similarity=0.656  Sum_probs=47.0

Q ss_pred             hhhcccccccccccccccccccccCCCCCcccHHHHHHHhhc-CCCCccccccccc
Q 017736           15 KRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSD-EEADCCPVCNIDL   69 (367)
Q Consensus        15 ~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~-~~~~~CPvCR~~l   69 (367)
                      ..+.+.+.+.|+||++.|.+|+++ +|||+||..||..|+.. .....||+||..+
T Consensus        13 ~~~~~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~   67 (73)
T 2ysl_A           13 FVNKLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETSCGFFKCPLCKTSV   67 (73)
T ss_dssp             CCCCCCCCCBCTTTCSBCSSEEEC-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCC
T ss_pred             HHHhCccCCEeccCCcccCCeEEc-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcC
Confidence            346678899999999999999999 99999999999999963 2346899999877

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.24  E-value=1.5e-12  Score=113.00  Aligned_cols=80  Identities=21%  Similarity=0.366  Sum_probs=60.2

Q ss_pred             hhhhhhhhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCC------CCCCCCCChH
Q 017736            9 RHVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCL------PVEKLRPDHN   82 (367)
Q Consensus         9 ~~~v~v~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~------~~~~lr~n~~   82 (367)
                      +....+..+.+++.+.|+||+++|.+|+++ .|||+||..||.+|+.. +...||+||..+...      ....+.++..
T Consensus        18 g~~~~~~~~~l~~~~~C~IC~~~~~~pv~~-~CgH~FC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~   95 (141)
T 3knv_A           18 GFSKTLLGTKLEAKYLCSACRNVLRRPFQA-QCGHRYCSFCLASILSS-GPQNCAACVHEGIYEEGISILESSSAFPDNA   95 (141)
T ss_dssp             SBCGGGTGGGCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHGGG-SCEECHHHHHTTCCCTTTTEECGGGCEECHH
T ss_pred             CcchhhhhccCCcCcCCCCCChhhcCcEEC-CCCCccCHHHHHHHHhc-CCCCCCCCCCcccccccccccchhhhcccHH
Confidence            334455668899999999999999999998 99999999999999975 445799999865211      1223446666


Q ss_pred             HHHHHHHH
Q 017736           83 LQDIRAKI   90 (367)
Q Consensus        83 L~~li~kl   90 (367)
                      +..++..+
T Consensus        96 ~~~~i~~L  103 (141)
T 3knv_A           96 ARREVESL  103 (141)
T ss_dssp             HHHHHHTS
T ss_pred             HHHHHccc
Confidence            66666554

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.24  E-value=2.4e-12  Score=107.55  Aligned_cols=72  Identities=33%  Similarity=0.571  Sum_probs=60.6

Q ss_pred             hhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHC
Q 017736           15 KRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIF   91 (367)
Q Consensus        15 ~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klf   91 (367)
                      ..+.+.+.+.|+||+++|.+|+++ +|||+||..||..|+.... ..||+||..+   ....+.++..+..++..+.
T Consensus        11 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~-~~CP~Cr~~~---~~~~~~~~~~l~~~i~~l~   82 (118)
T 3hct_A           11 FDPPLESKYECPICLMALREAVQT-PCGHRFCKACIIKSIRDAG-HKCPVDNEIL---LENQLFPDNFAKREILSLM   82 (118)
T ss_dssp             BSSCCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHHC-SBCTTTCCBC---CGGGCEECHHHHHHHHTSE
T ss_pred             hccCCCCCCCCCcCChhhcCeEEC-CcCChhhHHHHHHHHhhCC-CCCCCCCCCc---CHHhcccCHHHHHHHccce
Confidence            456788999999999999999998 8999999999999997643 3799999887   4456778888888777653

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=5.5e-12  Score=94.60  Aligned_cols=52  Identities=27%  Similarity=0.608  Sum_probs=45.8

Q ss_pred             hhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           16 RETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        16 ~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      .+.+.+.+.|+||++.+.+|+.+ .|||+||..||.+|+.. ....||+||..+
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~   60 (66)
T 2ecy_A            9 VKTVEDKYKCEKCHLVLCSPKQT-ECGHRFCESCMAALLSS-SSPKCTACQESI   60 (66)
T ss_dssp             CCSCCCCEECTTTCCEESSCCCC-SSSCCCCHHHHHHHHTT-SSCCCTTTCCCC
T ss_pred             hhcCCcCCCCCCCChHhcCeeEC-CCCCHHHHHHHHHHHHh-CcCCCCCCCcCC
Confidence            45678899999999999999998 99999999999999963 346799999877

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=1.9e-12  Score=101.56  Aligned_cols=56  Identities=27%  Similarity=0.660  Sum_probs=48.3

Q ss_pred             hhhhccccccccccccccccc----ccccCCCCCcccHHHHHHHhhcC-CCCcccccccccC
Q 017736           14 VKRETLEACMTCPLCNSLLRE----ATTISLCLHTFCRKCIYEKLSDE-EADCCPVCNIDLG   70 (367)
Q Consensus        14 v~~e~Led~LtCpIC~~ll~d----Pvtl~~CgHtFC~~CI~~~l~~~-~~~~CPvCR~~l~   70 (367)
                      ...+.+.+.+.|+||++.|.+    |+.+ +|||+||..||.+|+... ....||+||..+.
T Consensus         7 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   67 (88)
T 2ct2_A            7 GNLDALREVLECPICMESFTEEQLRPKLL-HCGHTICRQCLEKLLASSINGVRCPFCSKITR   67 (88)
T ss_dssp             CSCCCCCSCCBCTTTCCBCCTTSSCEEEC-SSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred             cChhhccCCCCCccCCccccccCCCeEEC-CCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence            445678889999999999999    9988 999999999999999764 2468999998773

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=8.2e-12  Score=92.70  Aligned_cols=50  Identities=34%  Similarity=0.713  Sum_probs=43.8

Q ss_pred             hhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcC-CCCccccc
Q 017736           15 KRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDE-EADCCPVC   65 (367)
Q Consensus        15 ~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~-~~~~CPvC   65 (367)
                      ..+.+.+.+.|+||++.|.+|+++ +|||+||..||.+|+... ....||+|
T Consensus        13 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           13 FVNKLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCCCCBCTTTCSBCSSCEEC-TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             HHHhCccCCCCCcCCchhCCeEEe-CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            446688999999999999999999 999999999999999742 34679998

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.17  E-value=1.1e-11  Score=102.77  Aligned_cols=70  Identities=24%  Similarity=0.575  Sum_probs=55.6

Q ss_pred             hhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCC-CCChHHHHHHHHH
Q 017736           16 RETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKL-RPDHNLQDIRAKI   90 (367)
Q Consensus        16 ~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~l-r~n~~L~~li~kl   90 (367)
                      .+.+.+.+.|+||+++|.+|+++ +|||+||..||.+|+... ...||+||..+.   ...+ ..+..+.+++..+
T Consensus        17 ~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~---~~~~~~~~~~l~~~i~~l   87 (116)
T 1rmd_A           17 PAHFVKSISCQICEHILADPVET-SCKHLFCRICILRCLKVM-GSYCPSCRYPCF---PTDLESPVKSFLNILNSL   87 (116)
T ss_dssp             CHHHHHHTBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHT-CSBCTTTCCBCC---GGGCBCCCHHHHHHHHHC
T ss_pred             HHhccCCCCCCCCCcHhcCcEEc-CCCCcccHHHHHHHHhHC-cCcCCCCCCCCC---HhhccccHHHHHHHHHHh
Confidence            35577889999999999999998 999999999999999763 457999998873   2333 3466666666655

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.14  E-value=2.3e-11  Score=88.30  Aligned_cols=50  Identities=38%  Similarity=0.786  Sum_probs=43.0

Q ss_pred             hhhcccccccccccccccccccccCCCCCcccHHHHHHHhhc-CCCCccccc
Q 017736           15 KRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSD-EEADCCPVC   65 (367)
Q Consensus        15 ~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~-~~~~~CPvC   65 (367)
                      ..+.+.+.+.|+||++.+.+|+.+ +|||+||..||.+|+.. .....||+|
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A            8 ALENLQVEASCSVCLEYLKEPVII-ECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CSSCSCCCCBCSSSCCBCSSCCCC-SSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             HhhccccCCCCccCCcccCccEeC-CCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            345678899999999999999998 99999999999999764 345689998

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=99.10  E-value=2.5e-11  Score=107.18  Aligned_cols=72  Identities=33%  Similarity=0.577  Sum_probs=60.0

Q ss_pred             hhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHC
Q 017736           15 KRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIF   91 (367)
Q Consensus        15 ~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klf   91 (367)
                      ..+.+.+.|.|+||+++|.+|+++ +|||+||..||.+|+... ...||+||..+   ....+.++..+..++..+.
T Consensus        11 ~~~~~~~~~~C~IC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~---~~~~~~~~~~~~~~i~~l~   82 (170)
T 3hcs_A           11 FDPPLESKYECPICLMALREAVQT-PCGHRFCKACIIKSIRDA-GHKCPVDNEIL---LENQLFPDNFAKREILSLM   82 (170)
T ss_dssp             ESSCCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHH-CSBCTTTCCBC---CGGGCEECHHHHHHHHTSE
T ss_pred             hccCCCCCCCCCCCChhhcCcEEC-CCCCHHHHHHHHHHHHhC-CCCCCCCccCc---chhhhhhhHHHHHHHhhcc
Confidence            456789999999999999999998 999999999999999763 34799999887   4455677888877777653

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=2.7e-11  Score=92.23  Aligned_cols=49  Identities=18%  Similarity=0.497  Sum_probs=43.6

Q ss_pred             cccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           18 TLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        18 ~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      ...+.+.|+||++.+.+|+.+ +|||.||..||..|+...  ..||+||..+
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~   59 (71)
T 2d8t_A           11 PSLTVPECAICLQTCVHPVSL-PCKHVFCYLCVKGASWLG--KRCALCRQEI   59 (71)
T ss_dssp             SSSSCCBCSSSSSBCSSEEEE-TTTEEEEHHHHHHCTTCS--SBCSSSCCBC
T ss_pred             cCCCCCCCccCCcccCCCEEc-cCCCHHHHHHHHHHHHCC--CcCcCcCchh
Confidence            456788999999999999999 899999999999999653  6799999876

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.07  E-value=5.4e-11  Score=89.70  Aligned_cols=48  Identities=27%  Similarity=0.814  Sum_probs=42.2

Q ss_pred             ccccccccccccccccc-------cccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           19 LEACMTCPLCNSLLREA-------TTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        19 Led~LtCpIC~~ll~dP-------vtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      ..+.+.|+||++.|.+|       +.+ +|||+||..||.+|+...  ..||+||..+
T Consensus         7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~   61 (71)
T 3ng2_A            7 PSGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNA--NTCPTCRKKI   61 (71)
T ss_dssp             CTTCCBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHHC--SBCTTTCCBC
T ss_pred             CCCCCCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHHcC--CCCCCCCCcc
Confidence            46789999999999998       566 999999999999999764  5799999887

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.07  E-value=4.4e-11  Score=89.38  Aligned_cols=47  Identities=30%  Similarity=0.697  Sum_probs=40.4

Q ss_pred             cccccccccc-cccccc----ccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           21 ACMTCPLCNS-LLREAT----TISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        21 d~LtCpIC~~-ll~dPv----tl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      +++.|+||++ +|.+|+    .+ .|||+||..||.+|+.. +...||+||..+
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~   53 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVR-GAGNCPECGTPL   53 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEEC-TTCCCEEHHHHHHHHHT-TSSSCTTTCCCC
T ss_pred             CCCcCCcCCCCccCCCccCeecC-CCCCHhHHHHHHHHHHc-CCCcCCCCCCcc
Confidence            4688999999 999995    45 89999999999999765 346799999887

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.05  E-value=5.4e-11  Score=88.94  Aligned_cols=51  Identities=27%  Similarity=0.756  Sum_probs=44.0

Q ss_pred             hhcccccccccccccccccc-------cccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           16 RETLEACMTCPLCNSLLREA-------TTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        16 ~e~Led~LtCpIC~~ll~dP-------vtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      .+.+.+.+.|+||++.|.+|       +.+ .|||.||..||..|+..  ...||+||..+
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~   66 (69)
T 2ea6_A            9 GLRPSGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN--ANTCPTCRKKI   66 (69)
T ss_dssp             CCCTTCCCCCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHHH--CSSCTTTCCCC
T ss_pred             ccCCCCCCCCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHHc--CCCCCCCCCcc
Confidence            34567889999999999998       666 99999999999999976  45799999876

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=99.00  E-value=3.5e-10  Score=88.79  Aligned_cols=51  Identities=29%  Similarity=0.623  Sum_probs=41.7

Q ss_pred             hcccccccccccccccc--cccccCC--CCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           17 ETLEACMTCPLCNSLLR--EATTISL--CLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        17 e~Led~LtCpIC~~ll~--dPvtl~~--CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      ..++++++||||++.+.  +++.+ +  |||+||+.|+.+++.. +...||.||..+
T Consensus         6 ~~~~~~~~CpICle~~~~~d~~~~-p~~CGH~fC~~Cl~~~~~~-~~~~CP~CR~~~   60 (78)
T 1e4u_A            6 DAKEDPVECPLCMEPLEIDDINFF-PCTCGYQICRFCWHRIRTD-ENGLCPACRKPY   60 (78)
T ss_dssp             CCCCCCCBCTTTCCBCCTTTTTCC-SSTTSCCCCHHHHHHHTTS-SCSBCTTTCCBC
T ss_pred             cccccCCcCCccCccCcccccccc-ccCCCCCcCHHHHHHHHhc-CCCCCCCCCCcc
Confidence            45788999999999874  34443 4  9999999999998865 457899999887

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=98.98  E-value=1.4e-10  Score=85.40  Aligned_cols=46  Identities=33%  Similarity=0.893  Sum_probs=40.5

Q ss_pred             ccccccccccccccc-------cccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           21 ACMTCPLCNSLLREA-------TTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        21 d~LtCpIC~~ll~dP-------vtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      +.+.|+||++.+.+|       +.+ .|||.||..||.+|+..  ...||+||..+
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~   54 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN--ANTCPTCRKKI   54 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHH--CSBCTTTCCBC
T ss_pred             CCCCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHHc--CCCCCCCCccC
Confidence            468899999999988       566 99999999999999976  45799999877

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.96  E-value=1.1e-10  Score=85.34  Aligned_cols=44  Identities=25%  Similarity=0.692  Sum_probs=38.8

Q ss_pred             cccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      .+.++|+||++.|.+|+++ +|||+||..||..     ....||+||..+
T Consensus         4 ~~~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~-----~~~~CP~Cr~~~   47 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLL-PCLHTLCSGCLEA-----SGMQCPICQAPW   47 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCS-TTSCCSBTTTCSS-----SSSSCSSCCSSS
T ss_pred             ccCCCceEeCCccCCeEEc-CCCCcccHHHHcc-----CCCCCCcCCcEe
Confidence            5678999999999999998 8999999999876     235799999876

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.95  E-value=2.6e-10  Score=87.82  Aligned_cols=52  Identities=31%  Similarity=0.657  Sum_probs=42.6

Q ss_pred             hhccccccccccccccccccc--ccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           16 RETLEACMTCPLCNSLLREAT--TISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        16 ~e~Led~LtCpIC~~ll~dPv--tl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      .+.+.+.+.|+||++.|.++.  .+++|+|.||..||.+|+...  ..||+||..+
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~--~~CP~Cr~~~   62 (78)
T 2ect_A            9 EEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH--DSCPVCRKSL   62 (78)
T ss_dssp             CTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT--CSCTTTCCCC
T ss_pred             cccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC--CcCcCcCCcc
Confidence            345677899999999998653  334899999999999999653  5799999887

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.95  E-value=1.9e-10  Score=86.84  Aligned_cols=51  Identities=25%  Similarity=0.646  Sum_probs=44.0

Q ss_pred             hhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccC
Q 017736           16 RETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG   70 (367)
Q Consensus        16 ~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~   70 (367)
                      .+.+.+.+.|+||++.+.+ +.+ +|||.||..||.+|+..  ...||+||..+.
T Consensus         9 ~~~~~~~~~C~IC~~~~~~-~~~-~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~   59 (70)
T 2ecn_A            9 VKQLTDEEECCICMDGRAD-LIL-PCAHSFCQKCIDKWSDR--HRNCPICRLQMT   59 (70)
T ss_dssp             CCCCCCCCCCSSSCCSCCS-EEE-TTTEEECHHHHHHSSCC--CSSCHHHHHCTT
T ss_pred             hhcCCCCCCCeeCCcCccC-ccc-CCCCcccHHHHHHHHHC--cCcCCCcCCccc
Confidence            4567788999999999999 777 99999999999999863  567999998773

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=98.91  E-value=3.9e-10  Score=84.53  Aligned_cols=48  Identities=27%  Similarity=0.729  Sum_probs=40.9

Q ss_pred             cccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      .....|+||++.+.+|+.+.+|||.||..||.+|+...  ..||+||..+
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~--~~CP~Cr~~~   50 (68)
T 1chc_A            3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN--PTCPLCKVPV   50 (68)
T ss_dssp             CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS--CSTTTTCCCC
T ss_pred             CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc--CcCcCCChhh
Confidence            45678999999999985545999999999999999753  5799999876

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=98.90  E-value=5.2e-10  Score=80.40  Aligned_cols=49  Identities=24%  Similarity=0.675  Sum_probs=41.0

Q ss_pred             cccccccccccccccc---ccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           19 LEACMTCPLCNSLLRE---ATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        19 Led~LtCpIC~~ll~d---Pvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      +++...|+||++.|.+   ++.+..|||.||..||.+|+..  ...||+||..+
T Consensus         2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--~~~CP~Cr~~~   53 (55)
T 1iym_A            2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS--HSTCPLCRLTV   53 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT--CCSCSSSCCCS
T ss_pred             CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc--CCcCcCCCCEe
Confidence            4678899999999987   6666349999999999999965  45799999765

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=98.89  E-value=3.5e-10  Score=90.40  Aligned_cols=49  Identities=33%  Similarity=0.703  Sum_probs=41.6

Q ss_pred             ccccccccccccccccc---ccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           18 TLEACMTCPLCNSLLRE---ATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        18 ~Led~LtCpIC~~ll~d---Pvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      ...+...|+||++.|.+   ++.+ +|||.||..||..|+..  ...||+||..+
T Consensus        36 ~~~~~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~--~~~CP~Cr~~~   87 (91)
T 2l0b_A           36 AVGQEMCCPICCSEYVKGDVATEL-PCHHYFHKPCVSIWLQK--SGTCPVCRCMF   87 (91)
T ss_dssp             SSSSCSEETTTTEECCTTCEEEEE-TTTEEEEHHHHHHHHTT--TCBCTTTCCBS
T ss_pred             ccCCCCCCcccChhhcCCCcEEec-CCCChHHHHHHHHHHHc--CCcCcCcCccC
Confidence            35677899999998876   6677 89999999999999965  35799999876

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=98.88  E-value=6e-10  Score=79.95  Aligned_cols=46  Identities=28%  Similarity=0.618  Sum_probs=39.1

Q ss_pred             cccccccccccccc----ccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           21 ACMTCPLCNSLLRE----ATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        21 d~LtCpIC~~ll~d----Pvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      +...|+||++.|.+    ++.+ +|||.||..||.+|+...  ..||+||..+
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~   53 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVL-PCGHLLHRTCYEEMLKEG--YRCPLCSGPS   53 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEEC-TTSCEEETTHHHHHHHHT--CCCTTSCCSS
T ss_pred             CCCcCcccChhhcCCCcCeEec-CCCCcccHHHHHHHHHcC--CcCCCCCCcC
Confidence            46789999999866    5555 999999999999999874  6799999765

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=98.85  E-value=1e-09  Score=82.53  Aligned_cols=50  Identities=26%  Similarity=0.737  Sum_probs=40.7

Q ss_pred             hcccccccccccccccc---cccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           17 ETLEACMTCPLCNSLLR---EATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        17 e~Led~LtCpIC~~ll~---dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      +.......|+||++.|.   .++.+ +|||.||..||..|+...  ..||+||..+
T Consensus         9 ~~~~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~~--~~CP~Cr~~~   61 (69)
T 2kiz_A            9 TEEDTEEKCTICLSILEEGEDVRRL-PCMHLFHQVCVDQWLITN--KKCPICRVDI   61 (69)
T ss_dssp             CSTTCCCSBTTTTBCCCSSSCEEEC-TTSCEEEHHHHHHHHHHC--SBCTTTCSBS
T ss_pred             CcCCCCCCCeeCCccccCCCcEEEe-CCCCHHHHHHHHHHHHcC--CCCcCcCccc
Confidence            34567789999999885   34555 899999999999999764  4699999877

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.85  E-value=5.2e-10  Score=86.27  Aligned_cols=48  Identities=23%  Similarity=0.534  Sum_probs=42.4

Q ss_pred             hhhcccccccccccccccccccccCCCCCc-ccHHHHHHHhhcCCCCccccccccc
Q 017736           15 KRETLEACMTCPLCNSLLREATTISLCLHT-FCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        15 ~~e~Led~LtCpIC~~ll~dPvtl~~CgHt-FC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      ..+.+.+.+.|+||++.+.+|+.+ +|||. ||..|+..|      ..||+||..+
T Consensus        17 ~~~~~~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~------~~CP~Cr~~i   65 (74)
T 4ic3_A           17 QLRRLQEEKLCKICMDRNIAIVFV-PCGHLVTCKQCAEAV------DKCPMCYTVI   65 (74)
T ss_dssp             HHHHHHHHTBCTTTSSSBCCEEEE-TTCCBCCCHHHHTTC------SBCTTTCCBC
T ss_pred             HHhcCccCCCCCCCCCCCCCEEEc-CCCChhHHHHhhhcC------ccCCCcCcCc
Confidence            345677889999999999999999 99999 999999876      4699999876

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.85  E-value=9.1e-10  Score=83.94  Aligned_cols=52  Identities=27%  Similarity=0.664  Sum_probs=42.7

Q ss_pred             hhccccccccccccccccccccc--CCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           16 RETLEACMTCPLCNSLLREATTI--SLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        16 ~e~Led~LtCpIC~~ll~dPvtl--~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      ...+.+...|+||++.|.++..+  ++|+|.||..||.+|+...  ..||+||..+
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~--~~CP~Cr~~~   62 (74)
T 2ep4_A            9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR--KVCPLCNMPV   62 (74)
T ss_dssp             CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC--SBCTTTCCBC
T ss_pred             cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC--CcCCCcCccc
Confidence            34567789999999999866432  3799999999999999764  4799999877

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.85  E-value=1.1e-09  Score=90.17  Aligned_cols=50  Identities=24%  Similarity=0.559  Sum_probs=40.1

Q ss_pred             cccccccccccccccc--------------c---cCCCCCcccHHHHHHHhhc---CCCCcccccccccC
Q 017736           21 ACMTCPLCNSLLREAT--------------T---ISLCLHTFCRKCIYEKLSD---EEADCCPVCNIDLG   70 (367)
Q Consensus        21 d~LtCpIC~~ll~dPv--------------t---l~~CgHtFC~~CI~~~l~~---~~~~~CPvCR~~l~   70 (367)
                      .+..|+||++.|.+|.              .   +.+|+|.||..||..|+..   .....||+||..++
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~   93 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG   93 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence            3568999999997764              1   4489999999999999964   23468999998773

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.84  E-value=8.6e-10  Score=91.91  Aligned_cols=48  Identities=27%  Similarity=0.800  Sum_probs=42.0

Q ss_pred             ccccccccccccccccc-------cccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           19 LEACMTCPLCNSLLREA-------TTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        19 Led~LtCpIC~~ll~dP-------vtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      ..+.+.|+||++.|.+|       +.+ .|||+||..||.+|+...  ..||+|+..+
T Consensus         4 ~~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~   58 (133)
T 4ap4_A            4 GSGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNA--NTCPTCRKKI   58 (133)
T ss_dssp             -CCSCBCTTTCCBHHHHHHTTCCEEEE-TTCCEEEHHHHHHHHTTC--SBCTTTCCBC
T ss_pred             CCCCCCCcccChhhhCccccccCeEec-CCCChhhHHHHHHHHHhC--CCCCCCCCcC
Confidence            35689999999999999       777 999999999999999653  5799999887

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=1e-09  Score=84.09  Aligned_cols=48  Identities=25%  Similarity=0.594  Sum_probs=41.2

Q ss_pred             ccccccccccccccccc---cccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           19 LEACMTCPLCNSLLREA---TTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        19 Led~LtCpIC~~ll~dP---vtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      ..+...|+||++.|.++   +.+ +|+|.||..||..|+...  ..||+||..+
T Consensus        20 ~~~~~~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~--~~CP~Cr~~~   70 (75)
T 1x4j_A           20 QSEQTLCVVCMCDFESRQLLRVL-PCNHEFHAKCVDKWLKAN--RTCPICRADS   70 (75)
T ss_dssp             SSSCCEETTTTEECCBTCEEEEE-TTTEEEETTHHHHHHHHC--SSCTTTCCCC
T ss_pred             cCCCCCCeECCcccCCCCeEEEE-CCCCHhHHHHHHHHHHcC--CcCcCcCCcC
Confidence            45678999999999877   556 899999999999999763  5799999876

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.76  E-value=2.1e-09  Score=82.87  Aligned_cols=47  Identities=23%  Similarity=0.535  Sum_probs=40.6

Q ss_pred             hhcccccccccccccccccccccCCCCCc-ccHHHHHHHhhcCCCCccccccccc
Q 017736           16 RETLEACMTCPLCNSLLREATTISLCLHT-FCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        16 ~e~Led~LtCpIC~~ll~dPvtl~~CgHt-FC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      .+.+.+.+.|+||++.+.+|+.+ +|||. ||..|+...      ..||+||..+
T Consensus        19 ~~~~~~~~~C~IC~~~~~~~~~~-pCgH~~~C~~C~~~~------~~CP~Cr~~i   66 (75)
T 2ecg_A           19 LRRLQEEKLCKICMDRNIAIVFV-PCGHLVTCKQCAEAV------DKCPMCYTVI   66 (75)
T ss_dssp             HHHHHHHHSCSSSCSSCCCBCCS-SSCCCCBCHHHHHHC------SBCTTTCCBC
T ss_pred             HHcCCCCCCCCcCCCCCCCEEEe-cCCCHHHHHHHhhCC------CCCccCCcee
Confidence            34567788999999999999998 99999 999999642      5699999877

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.65  E-value=5.3e-09  Score=78.40  Aligned_cols=46  Identities=17%  Similarity=0.250  Sum_probs=40.8

Q ss_pred             cccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           22 CMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        22 ~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      .|.||||++++.+||.+..|||+||+.||.+|+...+  .||+++..+
T Consensus         3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~--~cP~t~~~L   48 (61)
T 2bay_A            3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG--NDPITNEPL   48 (61)
T ss_dssp             -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHS--BCTTTCCBC
T ss_pred             eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCC--CCcCCcCCC
Confidence            4889999999999999867999999999999998644  499999887

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.62  E-value=4.2e-09  Score=82.54  Aligned_cols=48  Identities=29%  Similarity=0.610  Sum_probs=41.5

Q ss_pred             hhcccccccccccccccccccccCCCCCc-ccHHHHHHHhhcCCCCcccccccccC
Q 017736           16 RETLEACMTCPLCNSLLREATTISLCLHT-FCRKCIYEKLSDEEADCCPVCNIDLG   70 (367)
Q Consensus        16 ~e~Led~LtCpIC~~ll~dPvtl~~CgHt-FC~~CI~~~l~~~~~~~CPvCR~~l~   70 (367)
                      .+.+.+...|+||++.+.+++.+ +|||. ||..|+..+      ..||+||..+.
T Consensus        12 ~~~l~~~~~C~IC~~~~~~~v~~-pCgH~~~C~~C~~~~------~~CP~Cr~~i~   60 (79)
T 2yho_A           12 LRKLKEAMLCMVCCEEEINSTFC-PCGHTVCCESCAAQL------QSCPVCRSRVE   60 (79)
T ss_dssp             HHHHHHHTBCTTTSSSBCCEEEE-TTCBCCBCHHHHTTC------SBCTTTCCBCC
T ss_pred             HHcCCCCCEeEEeCcccCcEEEE-CCCCHHHHHHHHHhc------CcCCCCCchhh
Confidence            45567788999999999999999 99999 999999865      26999998774

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.62  E-value=1.4e-08  Score=101.60  Aligned_cols=51  Identities=22%  Similarity=0.561  Sum_probs=43.6

Q ss_pred             hcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           17 ETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        17 e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      +.......|+||++.+.+|+.+ +|||.||..||..|+.. ....||+||..+
T Consensus       327 e~~~~~~~C~ICle~~~~pv~l-pCGH~FC~~Ci~~wl~~-~~~~CP~CR~~i  377 (389)
T 2y1n_A          327 EMGSTFQLCKICAENDKDVKIE-PCGHLMCTSCLTSWQES-EGQGCPFCRCEI  377 (389)
T ss_dssp             HTTTSSSBCTTTSSSBCCEEEE-TTCCEECHHHHHHHHHH-TCSBCTTTCCBC
T ss_pred             hhcCCCCCCCccCcCCCCeEEe-CCCChhhHHHHHHHHhc-CCCCCCCCCCcc
Confidence            3445558999999999999999 99999999999999873 346799999877

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.61  E-value=1.5e-08  Score=79.35  Aligned_cols=47  Identities=26%  Similarity=0.691  Sum_probs=38.9

Q ss_pred             cccccccccccccc--------------ccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           21 ACMTCPLCNSLLRE--------------ATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        21 d~LtCpIC~~ll~d--------------Pvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      ++..|+||++.|.+              ++.+..|+|.||..||.+|+...  ..||+||..+
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~~   74 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN--NRCPLCQQDW   74 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC--CBCTTTCCBC
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC--CCCCCcCCCc
Confidence            46779999999976              44553699999999999999764  5799999876

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.56  E-value=6.6e-09  Score=83.24  Aligned_cols=48  Identities=23%  Similarity=0.482  Sum_probs=39.4

Q ss_pred             cccccccccccccccccc--CCCCCcccHHHHHHHhhcC---C---CCcccc--cccc
Q 017736           21 ACMTCPLCNSLLREATTI--SLCLHTFCRKCIYEKLSDE---E---ADCCPV--CNID   68 (367)
Q Consensus        21 d~LtCpIC~~ll~dPvtl--~~CgHtFC~~CI~~~l~~~---~---~~~CPv--CR~~   68 (367)
                      +.++|+||++.+..|.++  ..|||.||..||.+++...   +   ...||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            468899999999988764  3699999999999998742   2   358999  9876

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.53  E-value=2.6e-08  Score=82.83  Aligned_cols=47  Identities=30%  Similarity=0.865  Sum_probs=41.4

Q ss_pred             cccccccccccccccc-------cccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           20 EACMTCPLCNSLLREA-------TTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        20 ed~LtCpIC~~ll~dP-------vtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      .+.+.|+||++.|.++       +.+ .|||.||..||.+|+..  ...||+||..+
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~  123 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN--ANTCPTCRKKI  123 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEE-TTSBEEEHHHHHHHHHH--CSBCTTTCCBC
T ss_pred             CCCCCCCCCCCccccccccCcceEeC-CCCChhhHHHHHHHHHc--CCCCCCCCCcC
Confidence            5678899999999987       666 99999999999999976  35799999877

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.41  E-value=3.8e-08  Score=97.08  Aligned_cols=47  Identities=26%  Similarity=0.526  Sum_probs=41.8

Q ss_pred             hhcccccccccccccccccccccCCCCCc-ccHHHHHHHhhcCCCCccccccccc
Q 017736           16 RETLEACMTCPLCNSLLREATTISLCLHT-FCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        16 ~e~Led~LtCpIC~~ll~dPvtl~~CgHt-FC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      ...+.+++.|+||++.+.+|+.+ +|||. ||..|+..+      ..||+||..+
T Consensus       289 ~~~l~~~~~C~IC~~~~~~~v~l-pCgH~~fC~~C~~~~------~~CP~CR~~i  336 (345)
T 3t6p_A          289 LRRLQEERTCKVCMDKEVSVVFI-PCGHLVVCQECAPSL------RKCPICRGII  336 (345)
T ss_dssp             HHHHHTTCBCTTTSSSBCCEEEE-TTCCEEECTTTGGGC------SBCTTTCCBC
T ss_pred             HHhCcCCCCCCccCCcCCceEEc-CCCChhHhHHHHhcC------CcCCCCCCCc
Confidence            45577889999999999999999 99999 999999876      4699999876

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=98.41  E-value=1.1e-07  Score=78.80  Aligned_cols=47  Identities=23%  Similarity=0.574  Sum_probs=38.9

Q ss_pred             ccccccccccccccc-----------------cccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           21 ACMTCPLCNSLLREA-----------------TTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        21 d~LtCpIC~~ll~dP-----------------vtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      +...|.||++.|.++                 +.+..|+|.|+..||..|+..  ...||+||..+
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~Cr~~~   99 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREW   99 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT--CSBCSSSCSBC
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc--CCcCcCCCCcc
Confidence            456899999998866                 344489999999999999965  46799999875

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.32  E-value=1.7e-07  Score=70.30  Aligned_cols=48  Identities=21%  Similarity=0.474  Sum_probs=40.0

Q ss_pred             ccccccccccccccccccc-CCCCCc-ccHHHHHHHhhcCCCCccccccccc
Q 017736           20 EACMTCPLCNSLLREATTI-SLCLHT-FCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        20 ed~LtCpIC~~ll~dPvtl-~~CgHt-FC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      .++..|.||++.+.+++.+ .+|||. ||..|+..++..  ...||+||..+
T Consensus         6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~CPiCR~~i   55 (64)
T 2vje_A            6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR--NKPCPVCRQPI   55 (64)
T ss_dssp             GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT--TCCCTTTCCCC
T ss_pred             CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc--CCcCCCcCcch
Confidence            4567899999999999853 389999 899999998864  35699999876

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.27  E-value=2.6e-07  Score=70.29  Aligned_cols=43  Identities=26%  Similarity=0.614  Sum_probs=37.7

Q ss_pred             cccccccccccccccccccCCCCCc-ccHHHHHHHhhcCCCCccccccccc
Q 017736           20 EACMTCPLCNSLLREATTISLCLHT-FCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        20 ed~LtCpIC~~ll~dPvtl~~CgHt-FC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      .+...|.||++.+.+++.+ +|||. ||..|+..      ...||+||..+
T Consensus        13 ~~~~~C~IC~~~~~~~v~~-pCgH~~~C~~C~~~------~~~CP~CR~~i   56 (68)
T 2ea5_A           13 ENSKDCVVCQNGTVNWVLL-PCRHTCLCDGCVKY------FQQCPMCRQFV   56 (68)
T ss_dssp             CCSSCCSSSSSSCCCCEET-TTTBCCSCTTHHHH------CSSCTTTCCCC
T ss_pred             CCCCCCCCcCcCCCCEEEE-CCCChhhhHHHHhc------CCCCCCCCcch
Confidence            4578899999999999998 99999 99999984      24699999877

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.26  E-value=3.2e-07  Score=68.57  Aligned_cols=48  Identities=23%  Similarity=0.559  Sum_probs=39.4

Q ss_pred             ccccccccccccccccccc-CCCCCc-ccHHHHHHHhhcCCCCccccccccc
Q 017736           20 EACMTCPLCNSLLREATTI-SLCLHT-FCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        20 ed~LtCpIC~~ll~dPvtl-~~CgHt-FC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      .....|+||++.+.+++.+ .+|||. ||..|+..++..  ...||+||..+
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~CPiCR~~i   54 (63)
T 2vje_B            5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA--GASCPICKKEI   54 (63)
T ss_dssp             GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT--TCBCTTTCCBC
T ss_pred             CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh--CCcCCCcCchh
Confidence            3456899999999988643 489998 999999998855  35799999876

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=98.17  E-value=2.5e-07  Score=78.08  Aligned_cols=46  Identities=24%  Similarity=0.585  Sum_probs=0.4

Q ss_pred             cccccccccccccc-----------------cccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           22 CMTCPLCNSLLREA-----------------TTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        22 ~LtCpIC~~ll~dP-----------------vtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      .-.|.||++.|.++                 +.+.+|+|.||..||.+|+..  ...||+||..+
T Consensus        48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~--~~~CP~Cr~~~  110 (117)
T 4a0k_B           48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREW  110 (117)
T ss_dssp             C----------------------------------------------------------------
T ss_pred             CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc--CCcCCCCCCee
Confidence            35899999998763                 333489999999999999976  45799999775

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.14  E-value=1.4e-06  Score=68.63  Aligned_cols=49  Identities=16%  Similarity=0.556  Sum_probs=40.6

Q ss_pred             ccccccccccccc--ccccccCCCC-----CcccHHHHHHHhhcCCCCccccccccc
Q 017736           20 EACMTCPLCNSLL--REATTISLCL-----HTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        20 ed~LtCpIC~~ll--~dPvtl~~Cg-----HtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      .+...|.||++.+  .+++.+ +|.     |.|...||.+|+...+...||+|+..+
T Consensus        13 ~~~~~C~IC~~~~~~~~~l~~-pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~   68 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPLIT-PCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF   68 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCEEC-SSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBC
T ss_pred             CCCCCCeEcCccccCCCeeEe-ccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCee
Confidence            4567899999877  357765 896     999999999999876556899999887

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.77  E-value=2.8e-05  Score=60.49  Aligned_cols=49  Identities=24%  Similarity=0.513  Sum_probs=39.9

Q ss_pred             ccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           21 ACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        21 d~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      ....|.||.++|..-..-..|+|.|-..||.+||+......||+|+..+
T Consensus        14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w   62 (74)
T 2ct0_A           14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW   62 (74)
T ss_dssp             SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCC
T ss_pred             CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcC
Confidence            4467999999987544444799999999999999875457899999876

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.48  E-value=5.3e-05  Score=62.15  Aligned_cols=45  Identities=22%  Similarity=0.554  Sum_probs=37.0

Q ss_pred             cccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           24 TCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        24 tCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      .|++|.-.+..-..+.+|.|.||..|+..|... +...||.|+..+
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~-~~k~Cp~C~~~V   47 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKK-GDKMCPGCSDPV   47 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHT-TCCBCTTTCCBC
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHhc-cCCCCcCcCCee
Confidence            689999888766665599999999999998755 446799999776

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=97.04  E-value=0.00037  Score=51.69  Aligned_cols=49  Identities=22%  Similarity=0.466  Sum_probs=39.5

Q ss_pred             cccccccccccccccccccCCCC--C---cccHHHHHHHhhcCCCCccccccccc
Q 017736           20 EACMTCPLCNSLLREATTISLCL--H---TFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        20 ed~LtCpIC~~ll~dPvtl~~Cg--H---tFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      ++.-.|.||+....++... +|.  |   .|-..||.+|+...+...||+|+..+
T Consensus         4 ~~~~~CrIC~~~~~~~l~~-PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~   57 (60)
T 1vyx_A            4 EDVPVCWICNEELGNERFR-ACGCTGELENVHRSCLSTWLTISRNTACQICGVVY   57 (60)
T ss_dssp             CSCCEETTTTEECSCCCCC-SCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBC
T ss_pred             CCCCEeEEeecCCCCceec-CcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCee
Confidence            3556899999887777755 865  3   79999999999876667899999776

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=96.67  E-value=0.00076  Score=74.02  Aligned_cols=74  Identities=15%  Similarity=0.200  Sum_probs=64.3

Q ss_pred             hhcccccccccccccccccccccCCCC-CcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCCCc
Q 017736           16 RETLEACMTCPLCNSLLREATTISLCL-HTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPFK   94 (367)
Q Consensus        16 ~e~Led~LtCpIC~~ll~dPvtl~~Cg-HtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp~~   94 (367)
                      ...+.++|.|||-++++.|||++ +.| +||-+.+|.+|+..  ...||.-|.++   ....+.||+.|+..|+.|....
T Consensus       885 ~~~iP~~F~cPIs~~lM~DPVil-psG~~TydR~~I~~wl~~--~~tdP~Tr~~L---~~~~liPN~~Lk~~I~~w~~~~  958 (968)
T 3m62_A          885 YGDVPDEFLDPLMYTIMKDPVIL-PASKMNIDRSTIKAHLLS--DSTDPFNRMPL---KLEDVTPNEELRQKILCFKKQK  958 (968)
T ss_dssp             HCCSCGGGBCTTTCSBCSSEEEC-TTTCCEEEHHHHHHHHTT--CCBCTTTCCBC---CGGGCEECHHHHHHHHHHHHHH
T ss_pred             ccCCcHHhCCcchhhHHhCCeEc-CCCCEEECHHHHHHHHhc--CCCCCCCCCCC---CcccccccHHHHHHHHHHHHHH
Confidence            45678899999999999999999 887 69999999999976  35799999888   5667899999999999997655


Q ss_pred             h
Q 017736           95 R   95 (367)
Q Consensus        95 ~   95 (367)
                      +
T Consensus       959 ~  959 (968)
T 3m62_A          959 K  959 (968)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=96.61  E-value=0.00045  Score=68.18  Aligned_cols=51  Identities=18%  Similarity=0.432  Sum_probs=38.5

Q ss_pred             ccccccccccccccc----ccc---cCCCCCcccHHHHHHHhhcCCC---------CcccccccccC
Q 017736           20 EACMTCPLCNSLLRE----ATT---ISLCLHTFCRKCIYEKLSDEEA---------DCCPVCNIDLG   70 (367)
Q Consensus        20 ed~LtCpIC~~ll~d----Pvt---l~~CgHtFC~~CI~~~l~~~~~---------~~CPvCR~~l~   70 (367)
                      +....|+||+.++.+    |..   -..|+|.|...||.+|++....         ..||.|+.++.
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            356689999998876    322   1269999999999999975321         46999998874

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=96.23  E-value=0.0016  Score=52.03  Aligned_cols=33  Identities=18%  Similarity=0.665  Sum_probs=28.1

Q ss_pred             cccccccccc-ccccccc--cCCCCCcccHHHHHHHh
Q 017736           21 ACMTCPLCNS-LLREATT--ISLCLHTFCRKCIYEKL   54 (367)
Q Consensus        21 d~LtCpIC~~-ll~dPvt--l~~CgHtFC~~CI~~~l   54 (367)
                      +++.|+||.+ ++.+|+.  + .|+|+||..|+..+.
T Consensus         2 ee~~C~~C~~~~~~~av~~C~-~C~~~~C~~Cl~~~h   37 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCV-TCEVSYCDECLKATH   37 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEET-TTTEEECHHHHHHHS
T ss_pred             CCCCCcCCCCCCCCCceEECC-cCChHHhHHHCHHHh
Confidence            4689999996 5788888  6 899999999999843

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=95.82  E-value=0.0085  Score=55.93  Aligned_cols=49  Identities=24%  Similarity=0.513  Sum_probs=40.1

Q ss_pred             ccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           21 ACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        21 d~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      ....|.||.+++..-+.-..|+|.|-..|+..|++..+...||.|+...
T Consensus       179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W  227 (238)
T 3nw0_A          179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW  227 (238)
T ss_dssp             TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred             CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence            3667999999887655543599999999999999876667899999765

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=94.57  E-value=0.019  Score=56.91  Aligned_cols=72  Identities=21%  Similarity=0.396  Sum_probs=55.7

Q ss_pred             hhcccccccccccccccccccccCCCCCcccHH--HHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHH
Q 017736           16 RETLEACMTCPLCNSLLREATTISLCLHTFCRK--CIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKI   90 (367)
Q Consensus        16 ~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~--CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~kl   90 (367)
                      ...+.-.|.|||-...+..|+.-..|.|.-|..  -+..+........||+|...+   ...+|..|..+.+++...
T Consensus       243 ~~s~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~---~~~dL~ID~~~~~IL~~~  316 (371)
T 3i2d_A          243 TTSTIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDI---ALENLAISEFVDDILQNC  316 (371)
T ss_dssp             -CEEEEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBC---CGGGEEEBHHHHHHHTTS
T ss_pred             eeeeEEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCccc---CHHHeeEcHHHHHHHHhc
Confidence            344456699999999999999988999995554  355555555678999999876   778899999888887543

>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B

Probab=94.04  E-value=0.029  Score=55.42  Aligned_cols=73  Identities=22%  Similarity=0.344  Sum_probs=56.3

Q ss_pred             hhhcccccccccccccccccccccCCCCCcccH--HHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHH
Q 017736           15 KRETLEACMTCPLCNSLLREATTISLCLHTFCR--KCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKI   90 (367)
Q Consensus        15 ~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~--~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~kl   90 (367)
                      ....+.-.|.|||-...+..|+....|.|.-|.  .-+..+........||+|...+   ..++|..|..+.+++...
T Consensus       208 ~~~~~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~---~~~dL~ID~~~~~IL~~~  282 (360)
T 4fo9_A          208 ATTSLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKA---AYESLILDGLFMEILNDC  282 (360)
T ss_dssp             --CCEEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBC---CGGGEEEBHHHHHHHTTC
T ss_pred             eeeeeEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCccc---CHHHeEEcHHHHHHHHhC
Confidence            334455578999999999999998899999554  4445555455678999999876   678899999999988754

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=90.26  E-value=0.096  Score=41.35  Aligned_cols=44  Identities=25%  Similarity=0.695  Sum_probs=34.7

Q ss_pred             cccccccccccccccccccCCC----CCcccHHHHHHHhhcCC---CCcccc
Q 017736           20 EACMTCPLCNSLLREATTISLC----LHTFCRKCIYEKLSDEE---ADCCPV   64 (367)
Q Consensus        20 ed~LtCpIC~~ll~dPvtl~~C----gHtFC~~CI~~~l~~~~---~~~CPv   64 (367)
                      ...|.|.+|.+-|.+...+ .|    +|.||.-|-+.+++.++   ...||.
T Consensus        13 ~a~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPS   63 (93)
T 2cs3_A           13 SGPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKAQGATGEVYCPS   63 (93)
T ss_dssp             CCSCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHHHHSSSCCCCTT
T ss_pred             CCeeEeecchhhhccCcee-eCCCccCCeeeccccHHHHHhcCCCCcEECCC
Confidence            4568999999999998777 66    69999999999887642   245665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	367
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	5e-08
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	4e-07
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	3e-06
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	5e-06
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	6e-06
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	2e-05
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	6e-05
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	2e-04
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	0.001
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	0.002

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (114), Expect = 5e-08
 Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 17 ETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKL-SDEEADCCPVCNIDLGCLPVE 75
            ++  + CP+C  L++E  +   C H FC+ C+ + L   +    CP+C  D   +   
Sbjct: 16 NAMQKILECPICLELIKEPVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKND---ITKR 71

Query: 76 KLRPDHNLQDIRAKI 90
           L+       +  ++
Sbjct: 72 SLQESTRFSQLVEEL 86

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 4e-07
 Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 8/103 (7%)

Query: 1   MDTVRTTARHVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEAD 60
           M+     A    +   + LE  + C  C ++LRE   +  C H FC  C+ + +      
Sbjct: 1   MEPDGRGAWAHSRAALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPV 60

Query: 61  CCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPFKRRKVQAPEV 103
           C            ++ L+ +  L  +  ++    R  +   E+
Sbjct: 61  CYT-------PAWIQDLKINRQLDSM-IQLCSKLRNLLHDNEL 95

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.0 bits (101), Expect = 3e-06
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 17 ETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69
                ++C +C  +L +    S C H FCR CI   L    +  CP C    
Sbjct: 18 AHFVKSISCQICEHILADPVETS-CKHLFCRICILRCLKVMGS-YCPSCRYPC 68

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (98), Expect = 5e-06
 Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 2/58 (3%)

Query: 12 VKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69
           ++  E       C +C    ++      C H  C  C+     + E   CP C  ++
Sbjct: 13 YELYCEMGSTFQLCKICAENDKDVKIEP-CGHLMCTSCLTSWQ-ESEGQGCPFCRCEI 68

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 41.5 bits (97), Expect = 6e-06
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 25 CPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69
          CP+C       +    CLH FC  CI   +   +   CP+C + +
Sbjct: 8  CPICLEDPSNYSMALPCLHAFCYVCITRWI--RQNPTCPLCKVPV 50

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.7 bits (92), Expect = 2e-05
 Identities = 8/57 (14%), Positives = 19/57 (33%), Gaps = 2/57 (3%)

Query: 23 MTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRP 79
          M C +   + R           F +  + +    ++    P+ N  L    + ++ P
Sbjct: 1  MLCAISGKVPRRPVLSPKSRTIFEKSLLEQ--YVKDTGNDPITNEPLSIEEIVEIVP 55

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (89), Expect = 6e-05
 Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 6/47 (12%)

Query: 23 MTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69
          + C  C +  +    +  CLHT C  C+     +     CP+C    
Sbjct: 7  LRCQQCQAEAKCPKLLP-CLHTLCSGCL-----EASGMQCPICQAPW 47

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 37.8 bits (87), Expect = 2e-04
 Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 24 TCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNL 83
           CP+   L+++   +S    T+ R  I + L      C          L    L P++ L
Sbjct: 10 RCPISLELMKDPVIVS-TGQTYERSSIQKWLDAGHKTCPKSQE----TLLHAGLTPNYVL 64

Query: 84 QDI 86
          + +
Sbjct: 65 KSL 67

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 34.5 bits (79), Expect = 0.001
 Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 19 LEACMTCPLCNSLLREATTISL---CLHTFCRKCIYEKLSDEEADCCPVCNIDL 69
          ++  + C +C + L +         C H F  +C+   L       CP+C + +
Sbjct: 2  MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWL--GSHSTCPLCRLTV 53

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 34.1 bits (77), Expect = 0.002
 Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 4/51 (7%)

Query: 20 EACMTCPLCNSLLREA----TTISLCLHTFCRKCIYEKLSDEEADCCPVCN 66
          E    C +CN  L          +  L    R C+   L+      C +C 
Sbjct: 4  EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICG 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	367
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.54
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.53
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.5
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.49
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.4
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.4
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.23
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.18
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.02
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.0
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	98.98
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.9
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.89
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.6
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.42
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	98.36
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	97.77
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	90.41

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=1.2e-15  Score=118.31  Aligned_cols=71  Identities=21%  Similarity=0.244  Sum_probs=62.1

Q ss_pred             cccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCCC
Q 017736           18 TLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPF   93 (367)
Q Consensus        18 ~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp~   93 (367)
                      ++.++|.||||+++|.+||++ +|||+||+.||.+|+.. +...||.|+..+   ....+.+|..|+++|+.|...
T Consensus         3 eiP~~l~CpIc~~l~~dPv~~-~cGhtfc~~ci~~~l~~-~~~~cP~c~~~l---~~~~l~pN~~L~~~I~~~l~~   73 (80)
T d2c2la2           3 DIPDYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQR-VGHFNPVTRSPL---TQEQLIPNLAMKEVIDAFISE   73 (80)
T ss_dssp             CCCSTTBCTTTCSBCSSEEEC-SSCCEEETTHHHHHHHH-TCSSCTTTCCCC---CGGGCEECHHHHHHHHHHHTT
T ss_pred             CCCccccCcCcCchhhhhccc-CCcCeecHHHHHHHHhc-CCccCCCccccc---cccccccHHHHHHHHHHHHHH
Confidence            467899999999999999998 99999999999999976 345799999887   556789999999999998643

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.53  E-value=1.9e-15  Score=116.52  Aligned_cols=69  Identities=20%  Similarity=0.340  Sum_probs=61.4

Q ss_pred             cccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHC
Q 017736           18 TLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIF   91 (367)
Q Consensus        18 ~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klf   91 (367)
                      ++.++|.||||+++|.+||++ .|||+||+.||.+|+.. +...||.|+..+   ....+.+|+.|+++|+.|.
T Consensus         4 eiP~~l~CpIc~~~m~dPV~~-~cgh~fc~~ci~~~~~~-~~~~cP~~~~~l---~~~~l~pN~~L~~~I~~~~   72 (78)
T d1t1ha_           4 EFPEYFRCPISLELMKDPVIV-STGQTYERSSIQKWLDA-GHKTCPKSQETL---LHAGLTPNYVLKSLIALWC   72 (78)
T ss_dssp             CCSSSSSCTTTSCCCSSEEEE-TTTEEEEHHHHHHHHTT-TCCBCTTTCCBC---SSCCCEECTTTHHHHHHHH
T ss_pred             CCCccCCCcCcCchhhCceEc-cCCCcchHHHHHHHHHH-CCCCCCcccccC---CcccccchHHHHHHHHHHH
Confidence            477899999999999999999 89999999999999975 345799999887   5677899999999999884

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3e-15  Score=121.11  Aligned_cols=75  Identities=21%  Similarity=0.658  Sum_probs=62.1

Q ss_pred             hhhhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCC-CCcccccccccCCCCCCCCCCChHHHHHHHHHC
Q 017736           13 KVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEE-ADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIF   91 (367)
Q Consensus        13 ~v~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~-~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klf   91 (367)
                      .-..+.+++.|.||||+++|.+|+++ +|||+||..||.+|+.... ...||+||..+   ....+.+|..+.++++.+.
T Consensus        12 ~~~~~~l~~~l~CpIC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~---~~~~l~~n~~l~~~ve~l~   87 (103)
T d1jm7a_          12 QNVINAMQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI---TKRSLQESTRFSQLVEELL   87 (103)
T ss_dssp             HHHHHHHHHHTSCSSSCCCCSSCCBC-TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCC---CTTTCBCCCSSSHHHHHHH
T ss_pred             HHHHHhcccCcCCCccCchhCCeEEc-CCCCchhhHHHHHHHHHCCCCCcCcCCCCcC---ChhhCCcCHHHHHHHHHHH
Confidence            33456778899999999999999998 8999999999999997643 36799999887   5567888887777777763

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.2e-15  Score=119.05  Aligned_cols=73  Identities=25%  Similarity=0.597  Sum_probs=62.7

Q ss_pred             hhhhhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHC
Q 017736           12 VKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIF   91 (367)
Q Consensus        12 v~v~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klf   91 (367)
                      .....+.+.+.|+|+||+++|.+|+++..|||+||..||.+|+..    .||.||..+   ...++.+|..+.+++..|.
T Consensus        12 ~~~~l~~l~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~----~CP~Cr~~~---~~~~l~~n~~l~~lv~~~~   84 (97)
T d1jm7b_          12 SRAALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGT----GCPVCYTPA---WIQDLKINRQLDSMIQLCS   84 (97)
T ss_dssp             HHHHHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTT----BCSSSCCBC---SCSSCCCCHHHHHHHHHHH
T ss_pred             HHHHHHhhhhcCCCccCCchhhcCceeCCCCCchhHHHHHHHHhc----cccccCCcC---chhhCcccHHHHHHHHHHH
Confidence            344567788999999999999999987689999999999999843    499999877   5677899999999998773

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=6e-14  Score=113.02  Aligned_cols=72  Identities=15%  Similarity=0.216  Sum_probs=61.1

Q ss_pred             hcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCCC
Q 017736           17 ETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPF   93 (367)
Q Consensus        17 e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp~   93 (367)
                      ..+.++|.||||+.+|.+||++..|+|+||+.||.+|+..  ...||+|+.++   ....+.+|..|+++|+.|...
T Consensus        17 ~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~--~~~~P~~~~~l---~~~~L~pN~~Lr~~I~~~~~~   88 (98)
T d1wgma_          17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS--DQTDPFNRSPL---TMDQIRPNTELKEKIQRWLAE   88 (98)
T ss_dssp             CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT--SCBCTTTCSBC---CTTTSEECHHHHHHHHHHHHH
T ss_pred             cCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHh--cCCcccccccc---cchhhcchHHHHHHHHHHHHH
Confidence            3466789999999999999999444569999999999965  34699999987   667899999999999998543

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=6.3e-14  Score=110.70  Aligned_cols=67  Identities=25%  Similarity=0.591  Sum_probs=52.7

Q ss_pred             hcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCC-CCChHHHHHHH
Q 017736           17 ETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKL-RPDHNLQDIRA   88 (367)
Q Consensus        17 e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~l-r~n~~L~~li~   88 (367)
                      +.+.+.++|+||+++|.+|+++ +|||+||+.||.+|+.. +...||+||.++.   ..++ .+...+.+++.
T Consensus        18 ~d~~~~l~C~IC~~~~~~pv~~-~CgH~FC~~Ci~~~~~~-~~~~CP~Cr~p~~---~~~l~~P~~~~l~~l~   85 (86)
T d1rmda2          18 AHFVKSISCQICEHILADPVET-SCKHLFCRICILRCLKV-MGSYCPSCRYPCF---PTDLESPVKSFLNILN   85 (86)
T ss_dssp             HHHHHHTBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHH-TCSBCTTTCCBCC---GGGCBCCCHHHHHHHH
T ss_pred             hhhccCcCCccCCcchhcceec-CCCChhhHHHHHHHHhh-CCCcCcccCCCCC---hhhccCHHHHHHHHhc
Confidence            5566789999999999999999 99999999999999975 3457999998873   2333 35556656553

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.23  E-value=9.5e-13  Score=95.43  Aligned_cols=46  Identities=17%  Similarity=0.269  Sum_probs=41.1

Q ss_pred             ccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccC
Q 017736           23 MTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG   70 (367)
Q Consensus        23 LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~   70 (367)
                      |.|+||+++|.+||.+..|||+||+.||.+|+...  ..||+||.++.
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~~--~~CP~c~~~l~   46 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT--GNDPITNEPLS   46 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH--SBCTTTCCBCC
T ss_pred             CCCccCCchHHhcCccCCCCCcccHHHHHHHHhhc--cCCCccCCcCC
Confidence            67999999999999885799999999999999874  46999998873

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=8.2e-12  Score=96.44  Aligned_cols=48  Identities=21%  Similarity=0.606  Sum_probs=41.9

Q ss_pred             cccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      .+...|+||++.+.+|+.+ +|||.||..||..|+.. +...||+||..+
T Consensus        21 ~~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~wl~~-~~~~CP~Cr~~i   68 (79)
T d1fbva4          21 STFQLCKICAENDKDVKIE-PCGHLMCTSCLTSWQES-EGQGCPFCRCEI   68 (79)
T ss_dssp             CCTTBCTTTSSSBCCEECS-SSCCEECHHHHHHHHHT-TCCSCTTTCCCC
T ss_pred             CCCCCCccCCCcCCCeEEe-CCCCeeeHHHHHHHHHH-CcCcCCCCCcCc
Confidence            3446799999999999998 89999999999999965 345799999887

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.02  E-value=3.5e-11  Score=90.10  Aligned_cols=45  Identities=29%  Similarity=0.774  Sum_probs=39.4

Q ss_pred             ccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           23 MTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        23 LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      -.|+||++.|.+++.+.+|||+||..||.+|+...  ..||+||..+
T Consensus         6 d~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~--~~CP~CR~~i   50 (68)
T d1chca_           6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN--PTCPLCKVPV   50 (68)
T ss_dssp             CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS--CSTTTTCCCC
T ss_pred             CCCccCCcCccCCcEEeCCCCcCcHHHHHHHHHhC--CcCCCCCcch
Confidence            45999999998887766999999999999999863  5699999876

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2.5e-11  Score=88.16  Aligned_cols=43  Identities=26%  Similarity=0.737  Sum_probs=37.8

Q ss_pred             ccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           21 ACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        21 d~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      +.|.|+||++.|.+|+++ +|||+||..||.++     ...||+||..+
T Consensus         5 ~~l~C~IC~~~~~~p~~l-pCgH~fC~~Ci~~~-----~~~CP~Cr~~~   47 (56)
T d1bora_           5 QFLRCQQCQAEAKCPKLL-PCLHTLCSGCLEAS-----GMQCPICQAPW   47 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCS-TTSCCSBTTTCSSS-----SSSCSSCCSSS
T ss_pred             CCCCCcccCcccCCCEEe-cCCCHHhHHHHHcC-----CCcCcCCCCcc
Confidence            458999999999999999 89999999998653     35699999877

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=9.1e-11  Score=87.14  Aligned_cols=48  Identities=27%  Similarity=0.645  Sum_probs=38.0

Q ss_pred             ccccccccccccccc----cccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           21 ACMTCPLCNSLLREA----TTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        21 d~LtCpIC~~ll~dP----vtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      ++..||||++.+..+    +.+.+|||.||..||.+|+... ...||+||..+
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~~CP~CR~~i   53 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG-AGNCPECGTPL   53 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT-SSSCTTTCCCC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcC-cCCCCCCCcCc
Confidence            578999999865432    2344899999999999999653 35699999877

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.90  E-value=2.5e-10  Score=82.30  Aligned_cols=49  Identities=24%  Similarity=0.675  Sum_probs=40.2

Q ss_pred             cccccccccccccccc---ccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           19 LEACMTCPLCNSLLRE---ATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        19 Led~LtCpIC~~ll~d---Pvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      +++...|+||++.|.+   .+.+..|+|.||..||.+|+..  ...||+||..+
T Consensus         2 ~ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~--~~~CP~CR~~i   53 (55)
T d1iyma_           2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS--HSTCPLCRLTV   53 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT--CCSCSSSCCCS
T ss_pred             CCCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHh--CCcCCCCCCEe
Confidence            5678899999999874   3344479999999999999976  45699999765

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=4.3e-10  Score=79.95  Aligned_cols=46  Identities=30%  Similarity=0.607  Sum_probs=36.7

Q ss_pred             ccccccccccccc---cccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           23 MTCPLCNSLLREA---TTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        23 LtCpIC~~ll~dP---vtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      +.||||++.|...   +.+..|||.||..||.+|+... ...||+||.++
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~-~~~CP~CR~~~   49 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDE-NGLCPACRKPY   49 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTS-CCBCTTTCCBC
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhc-CCCCCccCCcC
Confidence            5799999988543   2333899999999999999753 45799999877

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.60  E-value=8.9e-09  Score=83.40  Aligned_cols=49  Identities=24%  Similarity=0.526  Sum_probs=38.5

Q ss_pred             cccccccccccccc-----------------cccCCCCCcccHHHHHHHhhcC---CCCcccccccccC
Q 017736           22 CMTCPLCNSLLREA-----------------TTISLCLHTFCRKCIYEKLSDE---EADCCPVCNIDLG   70 (367)
Q Consensus        22 ~LtCpIC~~ll~dP-----------------vtl~~CgHtFC~~CI~~~l~~~---~~~~CPvCR~~l~   70 (367)
                      +..|+||++.|..+                 +.+..|+|.||..||..|+...   +...||+||..++
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~   93 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG   93 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred             cccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhc
Confidence            45799999987543                 3345899999999999999753   2357999998774

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.42  E-value=4.9e-08  Score=70.65  Aligned_cols=49  Identities=24%  Similarity=0.535  Sum_probs=40.9

Q ss_pred             cccccccccccccccccccCCC-----CCcccHHHHHHHhhcCCCCccccccccc
Q 017736           20 EACMTCPLCNSLLREATTISLC-----LHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        20 ed~LtCpIC~~ll~dPvtl~~C-----gHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      ++...|+||++.+.++... +|     +|.||..||.+|+...+...||+||..+
T Consensus         4 ed~~~C~IC~~~~~~~~~~-~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~   57 (60)
T d1vyxa_           4 EDVPVCWICNEELGNERFR-ACGCTGELENVHRSCLSTWLTISRNTACQICGVVY   57 (60)
T ss_dssp             CSCCEETTTTEECSCCCCC-SCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBC
T ss_pred             CCCCCCccCCccCCCceeE-ecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCee
Confidence            4677899999988877655 54     5999999999999876667899999876

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=6.5e-08  Score=75.27  Aligned_cols=45  Identities=24%  Similarity=0.619  Sum_probs=35.3

Q ss_pred             cccccccccccc-----------------ccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736           23 MTCPLCNSLLRE-----------------ATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL   69 (367)
Q Consensus        23 LtCpIC~~ll~d-----------------Pvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l   69 (367)
                      -.|+||++.+.+                 ++.+..|||.||..||.+|+...  ..||+||..+
T Consensus        22 d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~~   83 (88)
T d3dplr1          22 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR--QVCPLDNREW   83 (88)
T ss_dssp             CCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC--SBCSSSCSBC
T ss_pred             CcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHC--CcCCCCCCcc
Confidence            349999876654                 23334899999999999999764  5699999876

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=4.5e-06  Score=64.71  Aligned_cols=45  Identities=29%  Similarity=0.524  Sum_probs=33.5

Q ss_pred             cccccccccccc--cccccCCCCCcccHHHHHHHhhcC----C--CCcccccc
Q 017736           22 CMTCPLCNSLLR--EATTISLCLHTFCRKCIYEKLSDE----E--ADCCPVCN   66 (367)
Q Consensus        22 ~LtCpIC~~ll~--dPvtl~~CgHtFC~~CI~~~l~~~----~--~~~CPvCR   66 (367)
                      ...|+||++.+.  +.+.+..|+|.||..||..|+...    .  ...||.|.
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~   57 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA   57 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTT
T ss_pred             CCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCC
Confidence            467999999764  434444899999999999998642    1  24699865

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.41  E-value=0.043  Score=40.39  Aligned_cols=43  Identities=26%  Similarity=0.690  Sum_probs=33.9

Q ss_pred             cccccccccccccccccCCC----CCcccHHHHHHHhhcCC---CCccccc
Q 017736           22 CMTCPLCNSLLREATTISLC----LHTFCRKCIYEKLSDEE---ADCCPVC   65 (367)
Q Consensus        22 ~LtCpIC~~ll~dPvtl~~C----gHtFC~~CI~~~l~~~~---~~~CPvC   65 (367)
                      -+.|.+|.+-|.|...+ .|    +|.||.-|-..+++.++   ...||.-
T Consensus         8 ~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sik~q~~~~evyCPSG   57 (80)
T d2cs3a1           8 PLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG   57 (80)
T ss_dssp             SCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred             ceeeeeehhhhcCCceE-eCCCCcCCceeccccHHHHHhcCCCCcEECCCC
Confidence            48899999999998777 66    69999999999887642   2456653