Citrus Sinensis ID: 017762

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360------
Protein Sequence
MLSLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADLDRQQCEHDELLKAQMQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLLYANMSDS
Secondary Structure (PSIPRED)
cccHHHHHHHccccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccccHHHHHHcccHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHcccHHHHHHHHHHHHHHHHcccccccHHHHccccccccHHHHccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHcHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MLSLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADLDRQQCEHDELLKAQMQAHYEEVQRIADATTLPHAMHYLSIRIAeeldlspltdkllrgkeqpytlsssekLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIdtarglgssdlpdadlidrddQQKFLASVDYLANYGMQAMISNVQAAADEAlkgkqlrdIFNTVVLHETFMQILEVFMsmgsphqwvdflmpqdiRFYKLVTasghdettlsgatkfDELMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMRvqsggslisgmplaklvprvvqmspsllaepsnnRIIQVIRTIPEVELFFTLLYANMSDS
Flexible Loop (DISEMBL)
mlslsdfwRRHRRkifittgvlgggyLLYKLYDSQRRIADLDRQQCEHDELLKAQMQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLrgkeqpytlssseklelWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFLMPQDIRFYKLVTASGHDettlsgatkfdeLMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGGSLISGMPLAKLVPRVVQMSpsllaepsnnrIIQVIRTIPEVELFFTLLYANMSDS
Low Complexity Region (SEG)
MLSLSDFWRRHRRKIFITTgvlgggyllyklyDSQRRIADLDRQQCEHDELLKAQMQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSdlpdadlidrddQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLLYANMSDS
Disordered region (IsUnstruct)
*****DFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADLDRQQCEHDELLKAQMQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRG****YTL**SEKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLLYA*****
Disordered Region (DISOPRED)
*LSLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIAD***********LKAQMQAHYEEVQRIADATTLPHAMHYLS***********************************DRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYID**********************KFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILE***********VDFLMPQDIRFY****************TKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALI*****************AKLVPRVVQMS*********NRIIQVIRTIPEVELFFTLLYANMS**
Disordered Region (DISEMBL)
MLSLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADLDRQQCEHDELLKAQMQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLLYANMSDS
Disordered Region (DISPRO)
*LSLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADLDRQQCEHDELLKAQMQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGS*****ADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLLYANMS**
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADLDRQQCEHDELLKAQMQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLLYANMSDS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	366	2.2.26 [Sep-21-2011]
Q8S9K7	364	Peroxisome biogenesis pro	yes	no	0.953	0.958	0.574	1e-118
Q8LDG7	358	Peroxisome biogenesis pro	no	no	0.939	0.960	0.567	1e-113
Q9JJK3	373	Peroxisomal biogenesis fa	N/A	no	0.822	0.806	0.280	3e-26
P56589	373	Peroxisomal biogenesis fa	yes	no	0.915	0.898	0.282	4e-26
Q60HE1	373	Peroxisomal biogenesis fa	N/A	no	0.915	0.898	0.282	4e-26
A6H7C2	373	Peroxisomal biogenesis fa	yes	no	0.844	0.828	0.281	4e-25
Q9QXY9	372	Peroxisomal biogenesis fa	yes	no	0.912	0.897	0.274	1e-24
Q9JJK4	372	Peroxisomal biogenesis fa	yes	no	0.907	0.892	0.275	3e-24
Q54U86	405	Peroxisome biogenesis fac	yes	no	0.849	0.767	0.201	3e-08
P28795	441	Peroxisomal biogenesis fa	yes	no	0.382	0.317	0.283	3e-06

>sp|Q8S9K7|PEX32_ARATH Peroxisome biogenesis protein 3-2 OS=Arabidopsis thaliana GN=PEX3-2 PE=2 SV=1

 Score =  425 bits (1093), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 209/364 (57%), Positives = 278/364 (76%), Gaps = 15/364 (4%)

Query: 7   FWRRHRRKIFITTGVLGGGYLLYKLYDSQ-RRIADLDRQ---QCEHDELLKAQMQAHYEE 62
           FWR+HRRK+ +T G LG GYLLYKLY+S  RR+ADL+R+   + E+DE++K QM+AH+E 
Sbjct: 7   FWRKHRRKVLVTAGCLGSGYLLYKLYNSHTRRLADLERELAHERENDEIIKTQMKAHFES 66

Query: 63  VQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILS 122
           +Q I D+TTLPHAM +LSIRI+EE+D+S + D+L +GK     LS  EKL+LWD LKILS
Sbjct: 67  IQMIVDSTTLPHAMQFLSIRISEEIDVSHVMDRLNQGKGM---LSPPEKLQLWDELKILS 123

Query: 123 FTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDL-PDADLIDRDDQQKFLAS 181
           FT++V++LW+VTM+SLYIRVQVNILGRHLY+DTAR LGSS L  + DLIDRDD+QKFL+S
Sbjct: 124 FTRMVLSLWSVTMLSLYIRVQVNILGRHLYVDTARALGSSHLLEEVDLIDRDDEQKFLSS 183

Query: 182 VDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVD 241
            D+L    M ++IS++Q +A+E LKGKQL+D+  T VL ET MQI++VFMS GSPH WVD
Sbjct: 184 ADFLVTNAMPSLISDMQGSAEEVLKGKQLKDVITTRVLQETVMQIVDVFMSTGSPHHWVD 243

Query: 242 FL-MPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDA 300
           +L MPQD +  +  T+   DE      +KF +LMVETR VL S E+T++V++S K   D 
Sbjct: 244 YLMMPQDTKLSR-TTSDSSDE----AVSKFHQLMVETREVLISTEFTNIVEISLKCFTDV 298

Query: 301 LIDEMRVQS-GGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLL 359
           L++EM  Q+  G L +G PLAK++P++ +    + AEPS NR +Q+IR +PEV+LFFTLL
Sbjct: 299 LVEEMETQTEAGGLATGKPLAKVLPQIEKTMNVITAEPSKNRFLQIIRDLPEVKLFFTLL 358

Query: 360 YANM 363
           YANM
Sbjct: 359 YANM 362

Involved in morphology determination of peroxisomes, but not in import of peroxisomal matrix proteins. May act as a docking factor for PEX19 and be necessary for the import of peroxisomal membrane proteins in the peroxisomes.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LDG7|PEX31_ARATH Peroxisome biogenesis protein 3-1 OS=Arabidopsis thaliana GN=PEX3-1 PE=2 SV=2

 Score =  407 bits (1046), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/363 (56%), Positives = 269/363 (74%), Gaps = 19/363 (5%)

Query: 7   FWRRHRRKIFITTGVLGGGYLLYKLYDSQ-RRIADLDRQ---QCEHDELLKAQMQAHYEE 62
            WR+HRRKI +TT  LG GYLLYKLY++  R++ADL+R+   + E+DE++K QM+AH++ 
Sbjct: 7   LWRKHRRKILVTTTCLGSGYLLYKLYNAHTRKLADLERELANERENDEIIKTQMKAHFDN 66

Query: 63  VQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILS 122
           +Q IAD TTLPHA+H+LS R+ EE+D+S + DKL +GK     L  SEKL+LW+ LKILS
Sbjct: 67  IQMIADTTTLPHAIHHLSSRVVEEIDVSSIMDKLSKGKG---ILIPSEKLQLWNELKILS 123

Query: 123 FTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPDA-DLIDRDDQQKFLAS 181
           FT++V++LW+VTM+SLYIRVQVNILGRHLYIDTARGLGSS L D  DLI+RDD+QKFL S
Sbjct: 124 FTRMVLSLWSVTMLSLYIRVQVNILGRHLYIDTARGLGSSHLLDELDLIERDDEQKFLTS 183

Query: 182 VDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVD 241
            D+LA  GM ++ISN+Q A  E LKGKQL+D+  T  L ET M+IL+VFMS GSPH WVD
Sbjct: 184 ADFLATSGMPSLISNMQNAVKEVLKGKQLKDVLTTSALRETVMRILDVFMSTGSPHHWVD 243

Query: 242 FL-MPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDA 300
           +L M QD         S  D T     TKF  L+ ETR VL+S ++++V ++S K    A
Sbjct: 244 YLMMSQD----ATTDVSSSDAT----VTKFHLLITETREVLTSNDFSNVAEISLKCCAVA 295

Query: 301 LIDEMRVQSGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLLY 360
           L++EM  Q+G  L +GM LAKL+P++ +  P + AEP  NR +Q+IR +PEV+LFFTLLY
Sbjct: 296 LVEEMETQTG--LATGMQLAKLLPQIEKTMPEISAEPEKNRFLQLIRDLPEVKLFFTLLY 353

Query: 361 ANM 363
           ANM
Sbjct: 354 ANM 356

Involved in morphology determination of peroxisomes, but not in import of peroxisomal matrix proteins. May act as a docking factor for PEX19 and be necessary for the import of peroxisomal membrane proteins in the peroxisomes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9JJK3|PEX3_CRILO Peroxisomal biogenesis factor 3 OS=Cricetulus longicaudatus GN=PEX3 PE=2 SV=1

 Score =  119 bits (298), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 177/349 (50%), Gaps = 48/349 (13%)

Query: 3   SLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADL-DRQQCEHDELLKAQMQAHYE 61
           S+ +F +RH++K      VLGG Y+L K    Q++I ++ +R+  E+  + +A+ Q H+E
Sbjct: 4   SMWNFLKRHKKKCIFLGTVLGGVYILGKY--GQKKIREIQEREAAEY--IAQARRQYHFE 59

Query: 62  EVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKIL 121
             QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+ LKI+
Sbjct: 60  SNQRTCNMTVL-SMLPTLREALMQQLNSESLTALL---KNRP-----SNKLEIWEDLKII 110

Query: 122 SFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTAR--GLGSSDLPDADLIDRDDQQKFL 179
           SFT+ +VA+++  M+ + +RVQ+NI+G ++Y+D A     G++ L   D+     QQ++L
Sbjct: 111 SFTRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNATVGKNGTTVLAPPDV-----QQQYL 165

Query: 180 ASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQW 239
           +S+ +L   G+  +++ ++ A    L    L+   + + L +   +I  +     SP  W
Sbjct: 166 SSIQHLLGDGLTELVTVIKQAVQRILGSVSLKHSLSLLDLEQKLKEIRILVEQHRSP-SW 224

Query: 240 VDFLMPQDIRFYKLVTASGHDETTLSGATKFD---------ELMVETRAVLSSAEYTSVV 290
           +D    +D+    L      DE T   A  +          +L+ ETR +L S ++++V+
Sbjct: 225 ID----KDVSKSSLCQYMMPDEETPLAAQAYGLSPRDITTIKLLNETRDMLESPDFSTVL 280

Query: 291 DMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRV 326
           +         L+D M          +Q G S+ S     +PLAK++P V
Sbjct: 281 NTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSINSLSSVSLPLAKIIPIV 329

Involved in peroxisome biosynthesis and integrity. Assembles membrane vesicles before the matrix proteins are translocated. As a docking factor for PEX19, is necessary for the import of peroxisomal membrane proteins in the peroxisomes.

Cricetulus longicaudatus (taxid: 10030)

>sp|P56589|PEX3_HUMAN Peroxisomal biogenesis factor 3 OS=Homo sapiens GN=PEX3 PE=1 SV=1

 Score =  119 bits (297), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 110/390 (28%), Positives = 197/390 (50%), Gaps = 55/390 (14%)

Query: 3   SLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADL-DRQQCEHDELLKAQMQAHYE 61
           S+ +F +RH++K      VLGG Y+L K    Q++I ++ +R+  E+  + +A+ Q H+E
Sbjct: 4   SVWNFLKRHKKKCIFLGTVLGGVYILGKY--GQKKIREIQEREAAEY--IAQARRQYHFE 59

Query: 62  EVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKIL 121
             QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+ LKI+
Sbjct: 60  SNQRTCNMTVL-SMLPTLREALMQQLNSESLTALL---KNRP-----SNKLEIWEDLKII 110

Query: 122 SFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPDADLIDRDDQQKFLAS 181
           SFT+  VA+++  M+ + +RVQ+NI+G ++Y+D A  +G +      L   D QQ++L+S
Sbjct: 111 SFTRSTVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKNG--TTILAPPDVQQQYLSS 167

Query: 182 VDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVD 241
           + +L   G+  +I+ ++ A  + L    L+   + + L +   +I  +     S   W++
Sbjct: 168 IQHLLGDGLTELITVIKQAVQKVLGSVSLKHSLSLLDLEQKLKEIRNLVEQHKS-SSWIN 226

Query: 242 ----------FLMPQDIRFYKLVTASG---HDETTLSGATKFDELMVETRAVLSSAEYTS 288
                     ++MP D      V A G    D TT+       +L+ ETR +L S ++++
Sbjct: 227 KDGSKPLLCHYMMP-DEETPLAVQACGLSPRDITTI-------KLLNETRDMLESPDFST 278

Query: 289 VVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMSPSLLA 335
           V++         L+D M          +Q G S+ S     +PLAK++P V     S+ +
Sbjct: 279 VLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIVNGQIHSVCS 338

Query: 336 E-PSNNRIIQVIRTIPEVELFFTLLYANMS 364
           E PS+   +Q + T+ +V+ F   +Y   S
Sbjct: 339 ETPSH--FVQDLLTMEQVKDFAANVYEAFS 366

Involved in peroxisome biosynthesis and integrity. Assembles membrane vesicles before the matrix proteins are translocated. As a docking factor for PEX19, is necessary for the import of peroxisomal membrane proteins in the peroxisomes.

Homo sapiens (taxid: 9606)

>sp|Q60HE1|PEX3_MACFA Peroxisomal biogenesis factor 3 OS=Macaca fascicularis GN=PEX3 PE=2 SV=1

 Score =  119 bits (297), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 110/390 (28%), Positives = 198/390 (50%), Gaps = 55/390 (14%)

Query: 3   SLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADL-DRQQCEHDELLKAQMQAHYE 61
           S+ +F +RH++K      VLGG Y+L K    Q++I ++ +R+  E+  + +A+ Q H+E
Sbjct: 4   SVWNFLKRHKKKCIFLGTVLGGVYILGKY--GQKKIREIQEREAAEY--IAQARRQYHFE 59

Query: 62  EVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKIL 121
             QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+ LKI+
Sbjct: 60  SNQRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KNRP-----SNKLEIWEDLKII 110

Query: 122 SFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPDADLIDRDDQQKFLAS 181
           SFT+ +VA+++  M+ + +RVQ+NI+G ++Y+D A  +G +      L   D QQ++L+S
Sbjct: 111 SFTRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKNG--TTILAPPDVQQQYLSS 167

Query: 182 VDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVD 241
           + +L   G+  +I+ ++ A  + L    L+   + + L +   +I  +     S   W++
Sbjct: 168 IQHLLGDGLTELITVIKQAVQKILGSVSLKHSLSLLDLEQKLKEIRNLVEQHKS-SSWIN 226

Query: 242 ----------FLMPQDIRFYKLVTASG---HDETTLSGATKFDELMVETRAVLSSAEYTS 288
                     ++MP D      V A G    D TT+       +L+ ETR +L S ++++
Sbjct: 227 KDGSKSLLCHYMMP-DEETPLAVQACGLSPRDITTI-------KLLNETRDMLESPDFST 278

Query: 289 VVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMSPSLLA 335
           V++         L+D M          +Q G S+ S     +PLAK++P V     S+ +
Sbjct: 279 VLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIVNGQIHSVCS 338

Query: 336 E-PSNNRIIQVIRTIPEVELFFTLLYANMS 364
           E PS+   +Q + T+ +V+ F   +Y   S
Sbjct: 339 ETPSH--FVQDLLTMEQVKDFAANVYEAFS 366

Involved in peroxisome biosynthesis and integrity. Assembles membrane vesicles before the matrix proteins are translocated. As a docking factor for PEX19, is necessary for the import of peroxisomal membrane proteins in the peroxisomes.

Macaca fascicularis (taxid: 9541)

>sp|A6H7C2|PEX3_BOVIN Peroxisomal biogenesis factor 3 OS=Bos taurus GN=PEX3 PE=2 SV=1

 Score =  115 bits (289), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 185/362 (51%), Gaps = 53/362 (14%)

Query: 6   DFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADL-DRQQCEHDELLKAQMQAHYEEVQ 64
           +F +RH++K      VLGG Y+L K    Q++I ++ +R+  E+  + +A+ Q H+E  Q
Sbjct: 7   NFLKRHKKKCIFLGTVLGGVYILGKY--GQKKIREIQEREAAEY--IAQARRQYHFESNQ 62

Query: 65  RIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSFT 124
           R  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+ LKI+SFT
Sbjct: 63  RTCNMTVLS-MLPTLREALMQQLNSESLTALL---KTRP-----SNKLEIWEDLKIISFT 113

Query: 125 KLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPDADLIDRDDQQKFLASVDY 184
           + +VA+++  M+ + +RVQ+NI+G ++Y+D A  +G +      L   D QQ++L+S+ +
Sbjct: 114 RSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKNG--TTVLAPPDVQQQYLSSIQH 170

Query: 185 LANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVD--- 241
           L   G+  +I+ ++ A  + L    L+   + + L +   +I ++     S   W++   
Sbjct: 171 LLGDGLTELITVIKQAVQKILGSVSLKHSLSLLDLEQKLKEIRDLVEQHKS-SSWINNDG 229

Query: 242 -------FLMPQDIRFYKLVTASG---HDETTLSGATKFDELMVETRAVLSSAEYTSVVD 291
                  ++MP D      V A G    D TT+       +L+ ETR +L S ++++V++
Sbjct: 230 SKSLLCHYMMP-DEETPLAVQACGLSPRDVTTI-------KLLNETRDMLESPDFSTVLN 281

Query: 292 MSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMSPSLLAE-P 337
                    L+D M          +Q G S+ S     +PLAK++P +     S+ +E P
Sbjct: 282 TCLSRGFSRLLDNMAEFFRPTEQDLQHGNSINSLSSVSLPLAKIIPIINGQIHSVCSETP 341

Query: 338 SN 339
           S+
Sbjct: 342 SH 343

Involved in peroxisome biosynthesis and integrity. Assembles membrane vesicles before the matrix proteins are translocated. As a docking factor for PEX19, is necessary for the import of peroxisomal membrane proteins in the peroxisomes.

Bos taurus (taxid: 9913)

>sp|Q9QXY9|PEX3_MOUSE Peroxisomal biogenesis factor 3 OS=Mus musculus GN=Pex3 PE=2 SV=1

 Score =  114 bits (285), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 107/390 (27%), Positives = 194/390 (49%), Gaps = 56/390 (14%)

Query: 3   SLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADL-DRQQCEHDELLKAQMQAHYE 61
           S+ +F +RH++K      VLGG Y+L K    Q++I ++ +R+  E+  + +A+ Q H+E
Sbjct: 4   SMWNFLKRHKKKCIFLGTVLGGVYILGKY--GQKKIREIQEREAAEY--IAQARRQYHFE 59

Query: 62  EVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKIL 121
             QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+ LKI+
Sbjct: 60  SNQRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KSRP-----SNKLEIWEDLKII 110

Query: 122 SFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTAR--GLGSSDLPDADLIDRDDQQKFL 179
           SFT+ +VA+++  M+ + +RVQ+NI+G ++Y+D A     G++ L   D+     QQ++L
Sbjct: 111 SFTRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNATVGKNGTTVLAPPDV-----QQQYL 165

Query: 180 ASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQ- 238
           +S+ +L   G+  +++ ++ A    L    L+   + + L +   +I      +   HQ 
Sbjct: 166 SSIQHLLGDGLTELVTVIKQAVQRILGSVSLKHSLSLLDLEQKLKEI----RILVEQHQS 221

Query: 239 -WVDFLMPQDIRFYKLVTASGHDETTLSGATKFD---------ELMVETRAVLSSAEYTS 288
            W D    +D+    L      DE T   A  +          +L+ ETR +L S ++++
Sbjct: 222 SWND----KDVSRSSLCQYMMPDEETPLAAQAYGLSHRDITTIKLLNETRDMLESPDFST 277

Query: 289 VVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMSPSLLA 335
           V++         L+D M          +Q G S+ S     +PLAK++P V     S+ +
Sbjct: 278 VLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSINSLSSVSLPLAKIIPIVNGQIHSVCS 337

Query: 336 E-PSNNRIIQVIRTIPEVELFFTLLYANMS 364
           E PS+   +Q +  + +V+ F   +Y   S
Sbjct: 338 ETPSH--FVQDLLMMEQVKDFAANVYEAFS 365

Involved in peroxisome biosynthesis and integrity. Assembles membrane vesicles before the matrix proteins are translocated. As a docking factor for PEX19, is necessary for the import of peroxisomal membrane proteins in the peroxisomes.

Mus musculus (taxid: 10090)

>sp|Q9JJK4|PEX3_RAT Peroxisomal biogenesis factor 3 OS=Rattus norvegicus GN=Pex3 PE=1 SV=1

 Score =  113 bits (282), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 197/392 (50%), Gaps = 60/392 (15%)

Query: 3   SLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADL-DRQQCEHDELLKAQMQAHYE 61
           S+ +F +RH++K      VLGG Y+L K    Q+++ ++ +R+  E+  + +A+ Q H+E
Sbjct: 4   SMWNFLKRHKKKCIFLGTVLGGVYILGKY--GQKKLREIQEREAAEY--IAQARRQYHFE 59

Query: 62  EVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKIL 121
             QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+ LKI+
Sbjct: 60  SNQRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KNRP-----SNKLEIWEDLKII 110

Query: 122 SFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTAR--GLGSSDLPDADLIDRDDQQKFL 179
           SFT+ +VA+++  M+ + +RVQ+NI+G ++Y+D A     G+S L   D+     QQ++L
Sbjct: 111 SFTRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNATVGKNGTSILAPPDV-----QQQYL 165

Query: 180 ASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQI---LEVFMSM--- 233
           +S+ +L   G+  +++ ++ A    L    L+   + + L +   +I   +E   S    
Sbjct: 166 SSIQHLLGDGLTELVTVIKQAVQRILGSISLKHSLSLLDLEQKLKEIRTLVEQHRSCWND 225

Query: 234 --GSPHQWVDFLMPQD-----IRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEY 286
              S      ++MP +      + Y L   S  D TT+       +L+ ETR +L S ++
Sbjct: 226 KDASKSSLCHYMMPDEETPLAAQAYGL---SPRDITTI-------KLLNETRDMLESPDF 275

Query: 287 TSVVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMSPSL 333
           ++V++         L+D M          +Q G S+ S     +PLAK++P V     S+
Sbjct: 276 STVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSINSLSSVSLPLAKIIPIVNGQIHSV 335

Query: 334 LAE-PSNNRIIQVIRTIPEVELFFTLLYANMS 364
            +E PS+   +Q +  + +V+ F   +Y   S
Sbjct: 336 CSETPSH--FVQDLLMMEQVKDFAANVYEAFS 365

Involved in peroxisome biosynthesis and integrity. Assembles membrane vesicles before the matrix proteins are translocated. As a docking factor for PEX19, is necessary for the import of peroxisomal membrane proteins in the peroxisomes.

Rattus norvegicus (taxid: 10116)

>sp|Q54U86|PEX3_DICDI Peroxisome biogenesis factor 3 OS=Dictyostelium discoideum GN=pex3 PE=3 SV=1

 Score = 60.1 bits (144), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 75/373 (20%), Positives = 162/373 (43%), Gaps = 62/373 (16%)

Query: 7   FWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADLDRQQCEHDELLKAQMQAHYEEVQRI 66
           F   H+  +F+ +   G  YL + +  S +R         +  +L K ++  ++E  Q++
Sbjct: 27  FLYNHKMGVFLVSFSSGVAYLYHNITQSHKR---------KQIKLAKERVMTYFESTQKL 77

Query: 67  ADATTLPHAMHYLSIRIAEELDLSPLTDKL-------LRGKEQPYTLSSSEKLELWDRLK 119
           ++          +   I + +D + + DK+       +R ++ P     SEKL+L D+LK
Sbjct: 78  SERE--------VDAIITKFIDENKILDKIQTPSLASIRSEKDP-----SEKLKLTDQLK 124

Query: 120 ILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPDADLIDRDDQQKFL 179
           +   TKL   L+ + MV+++ R+Q+N++G++ Y+D        +     LI++  +  F+
Sbjct: 125 VSIITKLFSVLYIIPMVTIFNRLQINLIGKYCYLDYVL-YKDQEQHSMRLINQQTESNFI 183

Query: 180 ASVD---YLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQIL--------- 227
            S +   +  +      I+ +Q     +LK  ++    +     E F+++L         
Sbjct: 184 NSRNNCYFFKDINFSQFINLIQEQIKISLKDWKI----DQQSSFEGFLKLLINIRNNFEK 239

Query: 228 -EVFMSMGSPHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMV---ETRAVLSS 283
            E+  S+ S +  + +L+P +     LV +    E       ++  L +   E R +  S
Sbjct: 240 KEIIASISSDNSLLKYLIPTEEEIDNLVQSQKTPEN--DNDIEYQNLKMLYNEIRNIFES 297

Query: 284 AEYTSV----VDMSFKAAVDALID-----EMRVQSGGSLISGMPLAKLVPR-VVQMSPSL 333
            ++  V    ++ SF      L +     E++ Q    ++  +P+   +P+ +V M   +
Sbjct: 298 QKFYDVLKDSINQSFLEFTKNLREDFESTELKKQIDSIVLPDLPIEMEIPKPLVTMHNII 357

Query: 334 LAEPSNNRIIQVI 346
           L    N +I  +I
Sbjct: 358 LLPKINKQIGNII 370

Involved in peroxisome biosynthesis.

Dictyostelium discoideum (taxid: 44689)

>sp|P28795|PEX3_YEAST Peroxisomal biogenesis factor 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PEX3 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 26/166 (15%)

Query: 9   RRHRRKIFI---------TTGVLGGGYLLYKLYDSQRRIADLDRQQCEHDELLKAQMQAH 59
           +RHR K+ I         TTG +   ++   LY  Q RI +      +H   +K Q++  
Sbjct: 12  QRHRGKVLISLTGIAALFTTGSVVVFFVKRWLYKQQLRITE------QH--FIKEQIKRR 63

Query: 60  YEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSE--------- 110
           +E+ Q  +  T       +  +    +L+L  +  +L   K Q     SSE         
Sbjct: 64  FEQTQEDSLYTIYELLPVWRMVLNENDLNLDSIVTQLKDQKNQLTRAKSSESRESSPLKS 123

Query: 111 KLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTA 156
           K ELW+ L++ S  KLV   + V+ + L  R+Q+NIL R+ Y+D+A
Sbjct: 124 KAELWNELELKSLIKLVTVTYTVSSLILLTRLQLNILTRNEYLDSA 169

Involved in peroxisome biosynthesis. May function as a receptor protein. Lack of this protein causes the peroxisomal-deficient phenotype and mislocalization in the cytosol of peroxisomal matrix proteins.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	366
224118704	374	predicted protein [Populus trichocarpa]	0.989	0.967	0.656	1e-137
225456094	373	PREDICTED: peroxisome biogenesis protein	0.991	0.973	0.667	1e-137
224135481	374	predicted protein [Populus trichocarpa]	0.975	0.954	0.660	1e-136
255577364	373	amino acid transporter, putative [Ricinu	0.989	0.970	0.649	1e-133
356512996	369	PREDICTED: peroxisome biogenesis protein	0.983	0.975	0.598	1e-126
255639582	369	unknown [Glycine max]	0.983	0.975	0.577	1e-121
356524660	369	PREDICTED: peroxisome biogenesis protein	0.983	0.975	0.577	1e-121
449497537	373	PREDICTED: peroxisome biogenesis protein	0.991	0.973	0.586	1e-120
449439105	373	PREDICTED: peroxisome biogenesis protein	0.991	0.973	0.583	1e-119
22330115	364	peroxin 3 [Arabidopsis thaliana] gi|7516	0.953	0.958	0.574	1e-116

>gi|224118704|ref|XP_002317886.1| predicted protein [Populus trichocarpa] gi|222858559|gb|EEE96106.1| predicted protein [Populus trichocarpa]

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 243/370 (65%), Positives = 299/370 (80%), Gaps = 8/370 (2%)

Query: 1   MLSLSDFWRRHRRKIFITTGVLGGGYLLYKLYDS-QRRIADLDRQ---QCEHDELLKAQM 56
           MLSL +FWRRHR KI IT GVLG GY LY+LY++ ++R+ADL+R+   Q  +DEL+KAQ+
Sbjct: 1   MLSLRNFWRRHRSKILITAGVLGSGYFLYRLYNAHEQRLADLERELARQRANDELIKAQL 60

Query: 57  QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 116
           QAH+E VQ IAD TTLPHAM YL  RIAEELDLS LT++L +GK +PYTL+SSEKLELWD
Sbjct: 61  QAHFENVQLIADTTTLPHAMQYLRSRIAEELDLSQLTERLQKGKGKPYTLTSSEKLELWD 120

Query: 117 RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSS-DLPDADLIDRDDQ 175
           RLKILSFT++VV+LWAVT++SLYI+VQVNILGRHLYIDTARGLGSS  L + DLIDRDDQ
Sbjct: 121 RLKILSFTQMVVSLWAVTILSLYIKVQVNILGRHLYIDTARGLGSSLLLENVDLIDRDDQ 180

Query: 176 QKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGS 235
           Q FLA  D+LAN G+ A+ISN+QA   E ++GK+L D+FNT   HET MQIL+ FMS+GS
Sbjct: 181 QNFLAGADFLANNGLLALISNIQAVVTEVIEGKKLIDLFNTTSFHETVMQILDKFMSVGS 240

Query: 236 PHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFK 295
            HQW+D+LMP+D   YKL T+S  D+T L  +T FD+LMVE R VLSSAE+  ++ +S K
Sbjct: 241 LHQWIDYLMPEDSGHYKLGTSSSIDDTVLPNSTNFDQLMVEARTVLSSAEFGKIMGISLK 300

Query: 296 AAVDALIDEMRVQ---SGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEV 352
            AVDAL+++M  Q   +G SL SGMPLAKL+ RV+QM PSLL E S N+ I++IRT+PEV
Sbjct: 301 VAVDALVEDMEAQCQSTGASLTSGMPLAKLLSRVMQMVPSLLREASQNQFIKIIRTVPEV 360

Query: 353 ELFFTLLYAN 362
           ELFFTLLYAN
Sbjct: 361 ELFFTLLYAN 370

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456094|ref|XP_002281306.1| PREDICTED: peroxisome biogenesis protein 3-2 [Vitis vinifera] gi|297734292|emb|CBI15539.3| unnamed protein product [Vitis vinifera]

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 247/370 (66%), Positives = 300/370 (81%), Gaps = 7/370 (1%)

Query: 1   MLSLSDFWRRHRRKIFITTGVLGGGYLLYKLYDS-QRRIADLDRQ---QCEHDELLKAQM 56
           M S+ DFWRRHRRKIF++ GV G GYLLYKLYD+ +RR+ DL+R+   Q E++EL+KAQM
Sbjct: 1   MFSVRDFWRRHRRKIFVSVGVFGSGYLLYKLYDAHRRRLDDLERELAVQRENEELIKAQM 60

Query: 57  QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 116
           QAH+E +QRIAD TTLPH+M YLS RIAEELDLS LT++L++GK QP TL+ SEKLELWD
Sbjct: 61  QAHFESIQRIADTTTLPHSMLYLSGRIAEELDLSHLTERLMKGKGQPNTLTPSEKLELWD 120

Query: 117 RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSD-LPDADLIDRDDQ 175
           RLKILSFT++V++LWA+TM+SLYIRVQVNILGRHLYIDTARG GSS  L +AD IDR DQ
Sbjct: 121 RLKILSFTRMVLSLWAMTMLSLYIRVQVNILGRHLYIDTARGGGSSHLLEEADPIDRHDQ 180

Query: 176 QKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGS 235
           QKFLAS D+L+NY + A+ISN+ AAA E LKGKQLRD+FN++VLH T MQIL++F+S G 
Sbjct: 181 QKFLASADFLSNYSIPALISNMHAAAAEVLKGKQLRDVFNSMVLHGTIMQILDLFISTGK 240

Query: 236 PHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFK 295
           PH  VD+LMP D + YK  + S  D +T +  TKFD+LMVETRAVLSSAE+ +V+D+S +
Sbjct: 241 PHNLVDYLMPDDTKSYKPASPSNGDSSTPADVTKFDQLMVETRAVLSSAEFINVIDVSLR 300

Query: 296 AAVDALI-DEMRVQ-SGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVE 353
             VDA++ D M VQ  GGS  SGM LAKL+PRV QM P LL EPS NR IQ+I+  PEVE
Sbjct: 301 TVVDAVVEDMMGVQLGGGSPSSGMVLAKLLPRVAQMGPLLLEEPSKNRFIQIIQKAPEVE 360

Query: 354 LFFTLLYANM 363
            FFTLLYANM
Sbjct: 361 FFFTLLYANM 370

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135481|ref|XP_002322084.1| predicted protein [Populus trichocarpa] gi|222869080|gb|EEF06211.1| predicted protein [Populus trichocarpa]

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 241/365 (66%), Positives = 294/365 (80%), Gaps = 8/365 (2%)

Query: 6   DFWRRHRRKIFITTGVLGGGYLLYKLYDS-QRRIADLDRQ---QCEHDELLKAQMQAHYE 61
           +FWRRH+RKI IT+GVLG GY L KLY++ Q+++ADL+R+   Q  +DEL+KAQ+Q H+E
Sbjct: 6   NFWRRHKRKILITSGVLGSGYFLCKLYNAHQQKLADLERELARQRANDELIKAQLQDHFE 65

Query: 62  EVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKIL 121
            VQ IAD TTLPHAM YL  RIAEELDLS LT++L +GK QP TL+SSEKLELWDRLKIL
Sbjct: 66  NVQLIADTTTLPHAMQYLRTRIAEELDLSQLTERLQKGKGQPTTLTSSEKLELWDRLKIL 125

Query: 122 SFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSS-DLPDADLIDRDDQQKFLA 180
           SFT+++V+LWAVTM+SLYI+VQVNILGRHLYIDTARGLGSS  L + DL+DRDDQQKFLA
Sbjct: 126 SFTQMLVSLWAVTMLSLYIKVQVNILGRHLYIDTARGLGSSLLLENVDLVDRDDQQKFLA 185

Query: 181 SVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWV 240
           S D+LAN G+ A+ISN+QA   E L+GK+L D+FNT  LHET MQIL  FMSMGSPHQW+
Sbjct: 186 SADFLANNGLLALISNIQAVVTEVLEGKKLTDLFNTTSLHETVMQILNKFMSMGSPHQWI 245

Query: 241 DFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDA 300
           D+LMP+D    KL  +S  D+  L  +  FD+LMVE RAVLSSAE+  ++++S K AVDA
Sbjct: 246 DYLMPEDCGHCKLGPSSSIDDMILPDSMNFDQLMVEARAVLSSAEFGKIMEISLKVAVDA 305

Query: 301 LIDEMRVQS---GGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFT 357
           L+D+M  QS   G SL  GMPLAKL+ RV+Q+ PSLL E S N+IIQ+IR +PEVELFFT
Sbjct: 306 LVDDMEAQSQSTGASLTLGMPLAKLLSRVLQIVPSLLGEASQNQIIQIIRNVPEVELFFT 365

Query: 358 LLYAN 362
           LLYAN
Sbjct: 366 LLYAN 370

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577364|ref|XP_002529562.1| amino acid transporter, putative [Ricinus communis] gi|223530974|gb|EEF32831.1| amino acid transporter, putative [Ricinus communis]

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 239/368 (64%), Positives = 291/368 (79%), Gaps = 6/368 (1%)

Query: 1   MLSLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQR-RIADLDRQQC---EHDELLKAQM 56
           MLSL DFWRRHRRKI I +GVLG GY LYKLY++ + R+A+L+R+     EHDEL+ AQ+
Sbjct: 1   MLSLRDFWRRHRRKIIIASGVLGSGYFLYKLYNAHKCRLAELERELASNREHDELINAQV 60

Query: 57  QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 116
            AH+E +QRIAD TTLPHAMHYLS RIAEELDLS LT++L++GK QP  L+ SEKLELWD
Sbjct: 61  LAHFENIQRIADTTTLPHAMHYLSSRIAEELDLSQLTERLMKGKGQPNALTPSEKLELWD 120

Query: 117 RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDL-PDADLIDRDDQ 175
           RLKILSFT+LVV+LWA+TM+SLYIR QVNILGRHLY+ TAR LGSSDL  D DLI+RD Q
Sbjct: 121 RLKILSFTRLVVSLWAMTMLSLYIRTQVNILGRHLYLATARVLGSSDLIEDIDLIERDGQ 180

Query: 176 QKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGS 235
           QKFLAS D+ AN G+ A+ S+VQ AA E LKGKQLRD FNT  LHET MQIL++ MS GS
Sbjct: 181 QKFLASSDFFANSGILALSSDVQLAAAEVLKGKQLRDFFNTATLHETIMQILDLLMSRGS 240

Query: 236 PHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFK 295
           PH WV++LMP D RF K    S  D+  ++  TKF++LM E RAV+SSAE+  VV+ S +
Sbjct: 241 PHHWVEYLMPADARFDKRPIDSSSDDIIMTDGTKFEQLMAEARAVISSAEFLGVVEKSLE 300

Query: 296 AAVDALIDEMRVQ-SGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVEL 354
            +VDAL+ +M  + SGGSL++GMPLA+LVPRV QM P LL EPS NR +Q+I +IP+VE 
Sbjct: 301 VSVDALVADMGAESSGGSLMAGMPLARLVPRVAQMGPLLLEEPSRNRFLQIIWSIPQVEG 360

Query: 355 FFTLLYAN 362
           FF+ LYAN
Sbjct: 361 FFSALYAN 368

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512996|ref|XP_003525200.1| PREDICTED: peroxisome biogenesis protein 3-2-like [Glycine max]

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 221/369 (59%), Positives = 289/369 (78%), Gaps = 9/369 (2%)

Query: 1   MLSLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRR-IADLDRQ---QCEHDELLKAQM 56
           MLS+ DFWRRHRRK+F+T GVLG GYLLYKLY + R  + +L+R+   Q E +EL+KAQM
Sbjct: 1   MLSVRDFWRRHRRKVFVTVGVLGSGYLLYKLYGAHRHGVQELERELAVQRETEELMKAQM 60

Query: 57  QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 116
           QAH+E +QR++D T LPHAMH LS RI EELDLS L ++L++GK QP TL+ SEKL+LW 
Sbjct: 61  QAHFENIQRMSDVT-LPHAMHELSCRITEELDLSHLLERLIQGKGQPNTLTQSEKLDLWS 119

Query: 117 RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSD-LPDADLIDRDDQ 175
           RLKILSFT++ +++WA TM+SLY +VQVNILGRHLYIDTAR LG SD +   D++DR+DQ
Sbjct: 120 RLKILSFTRMTLSVWATTMLSLYTKVQVNILGRHLYIDTARSLGISDSVESGDVVDREDQ 179

Query: 176 QKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGS 235
           +KFL SVD+L+ +GM A+IS+++AA  E LKGKQL   FN+  LHET MQIL  FMSMG+
Sbjct: 180 KKFLDSVDFLSQHGMPALISDMEAATKEVLKGKQLSTFFNSTTLHETIMQILNTFMSMGT 239

Query: 236 PHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFK 295
           P+ W+ +++P+D+R Y   T SG D+      T+F++LM+E RAVLSSAE+ S+V++S K
Sbjct: 240 PNSWIKYMIPEDVRPYS--TTSGSDDPVPFDVTEFEQLMIEARAVLSSAEFGSIVEISLK 297

Query: 296 AAVDALIDEMRVQ-SGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVEL 354
           A VD L++ MR + SGGS+  GMPLA+++P+V QM P LL EPS N+ IQ+I+ I EVEL
Sbjct: 298 AVVDTLVELMRTKFSGGSVAEGMPLARVLPQVAQMCPLLLGEPSKNQFIQIIKNIQEVEL 357

Query: 355 FFTLLYANM 363
           FFTLLYANM
Sbjct: 358 FFTLLYANM 366

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255639582|gb|ACU20085.1| unknown [Glycine max]

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 213/369 (57%), Positives = 286/369 (77%), Gaps = 9/369 (2%)

Query: 1   MLSLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRR-IADLDRQ---QCEHDELLKAQM 56
           MLS+ DFWRRHRRK+F+T GVLG GYLLYKLY +QR  + +L+R+   Q E ++L+KAQM
Sbjct: 1   MLSVRDFWRRHRRKVFVTVGVLGSGYLLYKLYGAQRHGVQELERELAVQRETEDLMKAQM 60

Query: 57  QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 116
           QAH+E +Q+++D T LPHAMH LS RI EELDLS L ++L++GK QP TL+ SEKL+LW 
Sbjct: 61  QAHFENIQKMSDVT-LPHAMHELSCRITEELDLSHLLERLIQGKGQPNTLTQSEKLDLWS 119

Query: 117 RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSD-LPDADLIDRDDQ 175
           RLKILSFT++ +++WA TM+SLY +VQVNILGRHLYIDTAR LG SD +   D++DR+DQ
Sbjct: 120 RLKILSFTRMTLSVWATTMLSLYTKVQVNILGRHLYIDTARSLGISDSVESGDVVDREDQ 179

Query: 176 QKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGS 235
           +KFL ++D+L+ +GM A+IS+++AA  E LKGKQL   FN+  LHET MQIL  FMSMG+
Sbjct: 180 KKFLDNIDFLSQHGMPALISDMEAATKEVLKGKQLSTFFNSTTLHETIMQILNSFMSMGT 239

Query: 236 PHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFK 295
           P+ W+ +++P+D+R Y   T  G D+      T+F++LM+E  AVLSSAE+ S+V++S K
Sbjct: 240 PNSWIKYMIPEDVRPYS--TTHGSDDPVPFDMTEFEQLMMEAWAVLSSAEFGSIVEISLK 297

Query: 296 AAVDALIDEMRVQ-SGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVEL 354
           A VD L++ M  + SGGS+  G+PLA+++P+V QM P LL EP  N+ IQ+I+ I EVEL
Sbjct: 298 AVVDTLVELMGTKFSGGSVAGGLPLARVLPQVAQMCPLLLEEPRKNQFIQIIKNIQEVEL 357

Query: 355 FFTLLYANM 363
           FFTLLYANM
Sbjct: 358 FFTLLYANM 366

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524660|ref|XP_003530946.1| PREDICTED: peroxisome biogenesis protein 3-2-like [Glycine max]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 213/369 (57%), Positives = 286/369 (77%), Gaps = 9/369 (2%)

Query: 1   MLSLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRR-IADLDRQ---QCEHDELLKAQM 56
           MLS+ DFWRRHRRK+F+T GVLG GYLLYKLY +QR  + +L+R+   Q E ++L+KAQM
Sbjct: 1   MLSVRDFWRRHRRKVFVTVGVLGSGYLLYKLYGAQRHGVQELERELAVQRETEDLMKAQM 60

Query: 57  QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 116
           QAH+E +Q+++D T LPHAMH LS RI EELDLS L ++L++GK QP TL+ SEKL+LW 
Sbjct: 61  QAHFENIQKMSDVT-LPHAMHELSCRITEELDLSHLLERLIQGKGQPNTLTQSEKLDLWS 119

Query: 117 RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSD-LPDADLIDRDDQ 175
           RLKILSFT++ +++WA TM+SLY +VQVNILGRHLYIDTAR LG SD +   D++DR+DQ
Sbjct: 120 RLKILSFTRMTLSVWATTMLSLYTKVQVNILGRHLYIDTARSLGISDSVESGDVVDREDQ 179

Query: 176 QKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGS 235
           +KFL ++D+L+ +GM A+IS+++AA  E LKGKQL   FN+  LHET MQIL  FMSMG+
Sbjct: 180 KKFLDNIDFLSQHGMPALISDMEAATKEVLKGKQLSTFFNSTTLHETIMQILNSFMSMGT 239

Query: 236 PHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFK 295
           P+ W+ +++P+D+R Y   T  G D+      T+F++LM+E  AVLSSAE+ S+V++S K
Sbjct: 240 PNSWIKYMIPEDVRPYS--TTYGSDDPVPFDMTEFEQLMMEAWAVLSSAEFGSIVEISLK 297

Query: 296 AAVDALIDEMRVQ-SGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVEL 354
           A VD L++ M  + SGGS+  G+PLA+++P+V QM P LL EP  N+ IQ+I+ I EVEL
Sbjct: 298 AVVDTLVELMGTKFSGGSVAGGLPLARVLPQVAQMCPLLLEEPRKNQFIQIIKNIQEVEL 357

Query: 355 FFTLLYANM 363
           FFTLLYANM
Sbjct: 358 FFTLLYANM 366

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449497537|ref|XP_004160430.1| PREDICTED: peroxisome biogenesis protein 3-2-like [Cucumis sativus]

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 217/370 (58%), Positives = 278/370 (75%), Gaps = 7/370 (1%)

Query: 1   MLSLSDFWRRHRRKIFITTGVLGGGYLLYKLYDS-QRRIADLDRQ---QCEHDELLKAQM 56
           M  + DFW+RH+RKI IT GVLG GY LY+ YD   RR+ D+ R+   + E DEL+KAQ+
Sbjct: 1   MFPIRDFWKRHKRKILITAGVLGSGYFLYRQYDYYSRRLHDIQRELDNEREADELIKAQI 60

Query: 57  QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 116
           QAH+E +QRIAD TTLPHA+ +L  RI E+LDLS LT++L+ GK QP TL+ +EKL+LW+
Sbjct: 61  QAHFENIQRIADTTTLPHAIQHLHNRIEEDLDLSHLTERLMMGKGQPNTLTLAEKLDLWE 120

Query: 117 RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSD-LPDADLIDRDDQ 175
            LKILSFTK+V++LWA+T++SLYIRVQVNILGRH+YIDTARGLGSS  L +ADLIDR+DQ
Sbjct: 121 NLKILSFTKMVISLWAITVLSLYIRVQVNILGRHMYIDTARGLGSSHLLEEADLIDREDQ 180

Query: 176 QKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGS 235
           QKFLA  D+L NYG+ A+I  +Q A  E LK KQLRD+FNT VL ET  QI+++FMS  S
Sbjct: 181 QKFLAISDFLCNYGLNALIPKLQVAVGEVLKRKQLRDVFNTTVLRETTTQIIKIFMSTAS 240

Query: 236 PHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFK 295
           PH W+D++MP D +     T S  D+       KFD+LM+ETRAVL SAE+ ++++ S +
Sbjct: 241 PHHWLDYVMPGDNQSSITDTLSTDDDAVAPNFNKFDQLMMETRAVLLSAEFGNIMERSLE 300

Query: 296 AAVDALIDEMR--VQSGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVE 353
             VD L++EM   +  G S  SG+PLA+LVPRV QM   LL +P  +R IQ+IR IPEVE
Sbjct: 301 VGVDGLMEEMEASLAGGSSKASGIPLARLVPRVAQMGLLLLEDPIKSRFIQMIRGIPEVE 360

Query: 354 LFFTLLYANM 363
           +FFTLLYANM
Sbjct: 361 IFFTLLYANM 370

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439105|ref|XP_004137328.1| PREDICTED: peroxisome biogenesis protein 3-2-like [Cucumis sativus]

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/370 (58%), Positives = 277/370 (74%), Gaps = 7/370 (1%)

Query: 1   MLSLSDFWRRHRRKIFITTGVLGGGYLLYKLYDS-QRRIADLDRQ---QCEHDELLKAQM 56
           M  + DFW+RH+RKI IT GVLG GY LY+ YD   RR+ D+ R+   + E DEL+KAQ+
Sbjct: 1   MFPIRDFWKRHKRKILITAGVLGSGYFLYRQYDYYSRRLHDIQRELDNEREADELIKAQI 60

Query: 57  QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 116
           QAH+E +QRIAD TTLPHA+ +L  RI E+LDLS LT++L+ GK QP TL+ +EKL+LW+
Sbjct: 61  QAHFENIQRIADTTTLPHAIQHLHNRIEEDLDLSHLTERLMMGKGQPNTLTLAEKLDLWE 120

Query: 117 RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSD-LPDADLIDRDDQ 175
            LKILSFTK+V++LWA+T++SLYIRVQVNILGRH+YIDTARGLGSS  L +ADLIDR+DQ
Sbjct: 121 NLKILSFTKMVISLWAITVLSLYIRVQVNILGRHMYIDTARGLGSSHLLEEADLIDREDQ 180

Query: 176 QKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGS 235
           QKFLA  D+L NYG+ A+I  +Q A  E LK KQLRD+FNT VL ET  QI+++FMS  S
Sbjct: 181 QKFLAISDFLCNYGLNALIPKLQVAVGEVLKRKQLRDVFNTTVLRETTTQIIKIFMSTAS 240

Query: 236 PHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFK 295
           PH W+D++MP D +     T S  D+       KFD+LM+ETRAVL S E+ ++++ S +
Sbjct: 241 PHHWLDYVMPGDNQSSITDTLSTDDDAVAPNFNKFDQLMMETRAVLLSVEFGNIMERSLE 300

Query: 296 AAVDALIDEMR--VQSGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVE 353
             VD L++EM   +  G S  SG+PLA+LVPRV QM   LL +P  +R IQ+IR IPEVE
Sbjct: 301 VGVDGLMEEMEASLAGGSSKASGIPLARLVPRVAQMGLLLLEDPIKSRFIQMIRGIPEVE 360

Query: 354 LFFTLLYANM 363
           +FFTLLYANM
Sbjct: 361 IFFTLLYANM 370

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22330115|ref|NP_683410.1| peroxin 3 [Arabidopsis thaliana] gi|75160618|sp|Q8S9K7.1|PEX32_ARATH RecName: Full=Peroxisome biogenesis protein 3-2; AltName: Full=Peroxin-3-2; Short=AtPEX3-2 gi|18650624|gb|AAL75911.1| At1g48640/F11I4_17 [Arabidopsis thaliana] gi|21700807|gb|AAM70527.1| At1g48640/F11I4_17 [Arabidopsis thaliana] gi|51968824|dbj|BAD43104.1| unknown protein [Arabidopsis thaliana] gi|332194209|gb|AEE32330.1| peroxin 3 [Arabidopsis thaliana]

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 209/364 (57%), Positives = 278/364 (76%), Gaps = 15/364 (4%)

Query: 7   FWRRHRRKIFITTGVLGGGYLLYKLYDSQ-RRIADLDRQ---QCEHDELLKAQMQAHYEE 62
           FWR+HRRK+ +T G LG GYLLYKLY+S  RR+ADL+R+   + E+DE++K QM+AH+E 
Sbjct: 7   FWRKHRRKVLVTAGCLGSGYLLYKLYNSHTRRLADLERELAHERENDEIIKTQMKAHFES 66

Query: 63  VQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILS 122
           +Q I D+TTLPHAM +LSIRI+EE+D+S + D+L +GK     LS  EKL+LWD LKILS
Sbjct: 67  IQMIVDSTTLPHAMQFLSIRISEEIDVSHVMDRLNQGKGM---LSPPEKLQLWDELKILS 123

Query: 123 FTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDL-PDADLIDRDDQQKFLAS 181
           FT++V++LW+VTM+SLYIRVQVNILGRHLY+DTAR LGSS L  + DLIDRDD+QKFL+S
Sbjct: 124 FTRMVLSLWSVTMLSLYIRVQVNILGRHLYVDTARALGSSHLLEEVDLIDRDDEQKFLSS 183

Query: 182 VDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVD 241
            D+L    M ++IS++Q +A+E LKGKQL+D+  T VL ET MQI++VFMS GSPH WVD
Sbjct: 184 ADFLVTNAMPSLISDMQGSAEEVLKGKQLKDVITTRVLQETVMQIVDVFMSTGSPHHWVD 243

Query: 242 FL-MPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDA 300
           +L MPQD +  +  T+   DE      +KF +LMVETR VL S E+T++V++S K   D 
Sbjct: 244 YLMMPQDTKLSR-TTSDSSDE----AVSKFHQLMVETREVLISTEFTNIVEISLKCFTDV 298

Query: 301 LIDEMRVQS-GGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLL 359
           L++EM  Q+  G L +G PLAK++P++ +    + AEPS NR +Q+IR +PEV+LFFTLL
Sbjct: 299 LVEEMETQTEAGGLATGKPLAKVLPQIEKTMNVITAEPSKNRFLQIIRDLPEVKLFFTLL 358

Query: 360 YANM 363
           YANM
Sbjct: 359 YANM 362

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	366
TAIR|locus:504956187	400	PEX3 "AT1G48635" [Arabidopsis	0.502	0.46	0.513	5.4e-94
TAIR|locus:2092747	376	PEX3-1 "AT3G18160" [Arabidopsi	0.931	0.906	0.516	4.1e-88
UNIPROTKB|Q60HE1	373	PEX3 "Peroxisomal biogenesis f	0.926	0.908	0.256	2.3e-23
UNIPROTKB|Q9JJK3	373	PEX3 "Peroxisomal biogenesis f	0.923	0.906	0.258	2.3e-23
UNIPROTKB|P56589	373	PEX3 "Peroxisomal biogenesis f	0.926	0.908	0.256	4.8e-23
UNIPROTKB|A6H7C2	373	PEX3 "Peroxisomal biogenesis f	0.918	0.900	0.250	1.6e-22
UNIPROTKB|F1N5H3	373	PEX3 "Peroxisomal biogenesis f	0.918	0.900	0.250	1.6e-22
MGI|MGI:1929646	372	Pex3 "peroxisomal biogenesis f	0.915	0.900	0.259	2.6e-22
UNIPROTKB|E2R9C7	373	PEX3 "Uncharacterized protein"	0.918	0.900	0.250	4.3e-22
UNIPROTKB|F1S714	373	PEX3 "Uncharacterized protein"	0.918	0.900	0.248	5.5e-22

TAIR|locus:504956187 PEX3 "AT1G48635" [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 5.4e-94, Sum P(2) = 5.4e-94
 Identities = 98/191 (51%), Positives = 136/191 (71%)

Query:   175 QQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMG 234
             +QKFL+S D+L    M ++IS++Q +A+E LKGKQL+D+  T VL ET MQI++VFMS G
Sbjct:   213 EQKFLSSADFLVTNAMPSLISDMQGSAEEVLKGKQLKDVITTRVLQETVMQIVDVFMSTG 272

Query:   235 SPHQWVDFLM-PQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMS 293
             SPH WVD+LM PQD +  +  T+   DE      +KF +LMVETR VL S E+T++V++S
Sbjct:   273 SPHHWVDYLMMPQDTKLSR-TTSDSSDEAV----SKFHQLMVETREVLISTEFTNIVEIS 327

Query:   294 FKAAVDALIDEMRVQS-GGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEV 352
              K   D L++EM  Q+  G L +G PLAK++P++ +    + AEPS NR +Q+IR +PEV
Sbjct:   328 LKCFTDVLVEEMETQTEAGGLATGKPLAKVLPQIEKTMNVITAEPSKNRFLQIIRDLPEV 387

Query:   353 ELFFTLLYANM 363
             +LFFTLLYANM
Sbjct:   388 KLFFTLLYANM 398

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005777 "peroxisome" evidence=ISS

GO:0005779 "integral to peroxisomal membrane" evidence=IEA

GO:0007031 "peroxisome organization" evidence=IEA;IMP

TAIR|locus:2092747 PEX3-1 "AT3G18160" [Arabidopsis thaliana (taxid:3702)]

 Score = 880 (314.8 bits), Expect = 4.1e-88, P = 4.1e-88
 Identities = 186/360 (51%), Positives = 248/360 (68%)

Query:    10 RHRRKIFITTXXXXXXXXXXXXXDSQ-RRIADLDRQ---QCEHDELLKAQMQAHYEEVQR 65
             +HRRKI +TT             ++  R++ADL+R+   + E+DE++K QM+AH++ +Q 
Sbjct:    28 KHRRKILVTTTCLGSGYLLYKLYNAHTRKLADLERELANERENDEIIKTQMKAHFDNIQM 87

Query:    66 IADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSFTK 125
             IAD TTLPHA+H+LS R+ EE+D+S + DKL +GK     L  SEKL+LW+ LKILSFT+
Sbjct:    88 IADTTTLPHAIHHLSSRVVEEIDVSSIMDKLSKGKG---ILIPSEKLQLWNELKILSFTR 144

Query:   126 LVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSXXXXXXXXXXXX-QQKFLASVDY 184
             +V++LW+VTM+SLYIRVQVNILGRHLYIDTARGLGSS             +QKFL S D+
Sbjct:   145 MVLSLWSVTMLSLYIRVQVNILGRHLYIDTARGLGSSHLLDELDLIERDDEQKFLTSADF 204

Query:   185 LANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFLM 244
             LA  GM ++ISN+Q A  E LKGKQL+D+  T  L ET M+IL+VFMS GSPH WVD+LM
Sbjct:   205 LATSGMPSLISNMQNAVKEVLKGKQLKDVLTTSALRETVMRILDVFMSTGSPHHWVDYLM 264

Query:   245 -PQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALID 303
               QD         S  D T     TKF  L+ ETR VL+S ++++V ++S K    AL++
Sbjct:   265 MSQDAT----TDVSSSDATV----TKFHLLITETREVLTSNDFSNVAEISLKCCAVALVE 316

Query:   304 EMRVQSGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLLYANM 363
             EM  Q+G  L +GM LAKL+P++ +  P + AEP  NR +Q+IR +PEV+LFFTLLYANM
Sbjct:   317 EMETQTG--LATGMQLAKLLPQIEKTMPEISAEPEKNRFLQLIRDLPEVKLFFTLLYANM 374

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005777 "peroxisome" evidence=ISS

GO:0005779 "integral to peroxisomal membrane" evidence=IEA

GO:0007031 "peroxisome organization" evidence=IEA;IMP

UNIPROTKB|Q60HE1 PEX3 "Peroxisomal biogenesis factor 3" [Macaca fascicularis (taxid:9541)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 99/386 (25%), Positives = 193/386 (50%)

Query:     3 SLSDFWRRHRRK-IFITTXXXXXXXXXXXXXDSQRRIADL-DRQQCEHDELLKAQMQAHY 60
             S+ +F +RH++K IF+ T               Q++I ++ +R+  E+  + +A+ Q H+
Sbjct:     4 SVWNFLKRHKKKCIFLGTVLGGVYILGKY---GQKKIREIQEREAAEY--IAQARRQYHF 58

Query:    61 EEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKI 120
             E  QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+ LKI
Sbjct:    59 ESNQRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KNRP-----SNKLEIWEDLKI 109

Query:   121 LSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSXXXXXXXXXXXXQQKFLA 180
             +SFT+ +VA+++  M+ + +RVQ+NI+G ++Y+D A  +G +            QQ++L+
Sbjct:   110 ISFTRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKNGTTILAPPDV--QQQYLS 166

Query:   181 SVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWV 240
             S+ +L   G+  +I+ ++ A  + L    L+   + + L +   +I  + +       W+
Sbjct:   167 SIQHLLGDGLTELITVIKQAVQKILGSVSLKHSLSLLDLEQKLKEIRNL-VEQHKSSSWI 225

Query:   241 DFLMPQDIRFYKLVTASGHDETTLS----GATKFD----ELMVETRAVLSSAEYTSVVDM 292
             +    + +  + ++     +ET L+    G +  D    +L+ ETR +L S ++++V++ 
Sbjct:   226 NKDGSKSLLCHYMMP---DEETPLAVQACGLSPRDITTIKLLNETRDMLESPDFSTVLNT 282

Query:   293 SFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMSPSLLAE-PS 338
                     L+D M          +Q G S+ S     +PLAK++P V     S+ +E PS
Sbjct:   283 CLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIVNGQIHSVCSETPS 342

Query:   339 NNRIIQVIRTIPEVELFFTLLYANMS 364
             +   +Q + T+ +V+ F   +Y   S
Sbjct:   343 H--FVQDLLTMEQVKDFAANVYEAFS 366

GO:0005777 "peroxisome" evidence=ISS

GO:0005779 "integral to peroxisomal membrane" evidence=ISS

GO:0007031 "peroxisome organization" evidence=ISS

GO:0045046 "protein import into peroxisome membrane" evidence=ISS

UNIPROTKB|Q9JJK3 PEX3 "Peroxisomal biogenesis factor 3" [Cricetulus longicaudatus (taxid:10030)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 100/387 (25%), Positives = 188/387 (48%)

Query:     3 SLSDFWRRHRRK-IFITTXXXXXXXXXXXXXDSQRRIADL-DRQQCEHDELLKAQMQAHY 60
             S+ +F +RH++K IF+ T               Q++I ++ +R+  E+  + +A+ Q H+
Sbjct:     4 SMWNFLKRHKKKCIFLGTVLGGVYILGKY---GQKKIREIQEREAAEY--IAQARRQYHF 58

Query:    61 EEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKI 120
             E  QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+ LKI
Sbjct:    59 ESNQRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KNRP-----SNKLEIWEDLKI 109

Query:   121 LSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSXXXXXXXXXXXXQQKFLA 180
             +SFT+ +VA+++  M+ + +RVQ+NI+G ++Y+D A  +G +            QQ++L+
Sbjct:   110 ISFTRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNAT-VGKNGTTVLAPPDV--QQQYLS 166

Query:   181 SVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWV 240
             S+ +L   G+  +++ ++ A    L    L+   + + L +   +I  +     SP  W+
Sbjct:   167 SIQHLLGDGLTELVTVIKQAVQRILGSVSLKHSLSLLDLEQKLKEIRILVEQHRSP-SWI 225

Query:   241 DFLMPQDIRFYKLVTASGHDETTLSGATKFD---------ELMVETRAVLSSAEYTSVVD 291
             D    +D+    L      DE T   A  +          +L+ ETR +L S ++++V++
Sbjct:   226 D----KDVSKSSLCQYMMPDEETPLAAQAYGLSPRDITTIKLLNETRDMLESPDFSTVLN 281

Query:   292 MSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMSPSLLAE-P 337
                      L+D M          +Q G S+ S     +PLAK++P V     S+ ++ P
Sbjct:   282 TCLNRGFSRLLDNMAEFFRPTEQDLQHGNSINSLSSVSLPLAKIIPIVNGQIHSVCSDTP 341

Query:   338 SNNRIIQVIRTIPEVELFFTLLYANMS 364
             S+   +Q +  + +V+ F   +Y   S
Sbjct:   342 SH--FVQDLLMMEQVKDFAANVYEAFS 366

GO:0005777 "peroxisome" evidence=ISS

GO:0005779 "integral to peroxisomal membrane" evidence=ISS

GO:0007031 "peroxisome organization" evidence=ISS

GO:0045046 "protein import into peroxisome membrane" evidence=ISS

UNIPROTKB|P56589 PEX3 "Peroxisomal biogenesis factor 3" [Homo sapiens (taxid:9606)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 99/386 (25%), Positives = 192/386 (49%)

Query:     3 SLSDFWRRHRRK-IFITTXXXXXXXXXXXXXDSQRRIADL-DRQQCEHDELLKAQMQAHY 60
             S+ +F +RH++K IF+ T               Q++I ++ +R+  E+  + +A+ Q H+
Sbjct:     4 SVWNFLKRHKKKCIFLGTVLGGVYILGKY---GQKKIREIQEREAAEY--IAQARRQYHF 58

Query:    61 EEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKI 120
             E  QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+ LKI
Sbjct:    59 ESNQRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KNRP-----SNKLEIWEDLKI 109

Query:   121 LSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSXXXXXXXXXXXXQQKFLA 180
             +SFT+  VA+++  M+ + +RVQ+NI+G ++Y+D A  +G +            QQ++L+
Sbjct:   110 ISFTRSTVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKNGTTILAPPDV--QQQYLS 166

Query:   181 SVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWV 240
             S+ +L   G+  +I+ ++ A  + L    L+   + + L +   +I  + +       W+
Sbjct:   167 SIQHLLGDGLTELITVIKQAVQKVLGSVSLKHSLSLLDLEQKLKEIRNL-VEQHKSSSWI 225

Query:   241 DFLMPQDIRFYKLVTASGHDETTLS----GATKFD----ELMVETRAVLSSAEYTSVVDM 292
             +    + +  + ++     +ET L+    G +  D    +L+ ETR +L S ++++V++ 
Sbjct:   226 NKDGSKPLLCHYMMP---DEETPLAVQACGLSPRDITTIKLLNETRDMLESPDFSTVLNT 282

Query:   293 SFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMSPSLLAE-PS 338
                     L+D M          +Q G S+ S     +PLAK++P V     S+ +E PS
Sbjct:   283 CLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIVNGQIHSVCSETPS 342

Query:   339 NNRIIQVIRTIPEVELFFTLLYANMS 364
             +   +Q + T+ +V+ F   +Y   S
Sbjct:   343 H--FVQDLLTMEQVKDFAANVYEAFS 366

GO:0005829 "cytosol" evidence=IEA

GO:0016557 "peroxisome membrane biogenesis" evidence=IEA

GO:0005779 "integral to peroxisomal membrane" evidence=IDA

GO:0007031 "peroxisome organization" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005777 "peroxisome" evidence=IDA;IMP

GO:0045046 "protein import into peroxisome membrane" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0008289 "lipid binding" evidence=IDA

GO:0046983 "protein dimerization activity" evidence=IDA

GO:0005778 "peroxisomal membrane" evidence=IDA;TAS

GO:0043234 "protein complex" evidence=IDA

GO:0032994 "protein-lipid complex" evidence=IDA

GO:0055085 "transmembrane transport" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|A6H7C2 PEX3 "Peroxisomal biogenesis factor 3" [Bos taurus (taxid:9913)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 96/383 (25%), Positives = 191/383 (49%)

Query:     6 DFWRRHRRK-IFITTXXXXXXXXXXXXXDSQRRIADL-DRQQCEHDELLKAQMQAHYEEV 63
             +F +RH++K IF+ T               Q++I ++ +R+  E+  + +A+ Q H+E  
Sbjct:     7 NFLKRHKKKCIFLGTVLGGVYILGKY---GQKKIREIQEREAAEY--IAQARRQYHFESN 61

Query:    64 QRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSF 123
             QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+ LKI+SF
Sbjct:    62 QRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KTRP-----SNKLEIWEDLKIISF 112

Query:   124 TKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSXXXXXXXXXXXXQQKFLASVD 183
             T+ +VA+++  M+ + +RVQ+NI+G ++Y+D A  +G +            QQ++L+S+ 
Sbjct:   113 TRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKNGTTVLAPPDV--QQQYLSSIQ 169

Query:   184 YLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFL 243
             +L   G+  +I+ ++ A  + L    L+   + + L +   +I ++ +       W++  
Sbjct:   170 HLLGDGLTELITVIKQAVQKILGSVSLKHSLSLLDLEQKLKEIRDL-VEQHKSSSWINND 228

Query:   244 MPQDIRFYKLVTASGHDETTLS----GATKFD----ELMVETRAVLSSAEYTSVVDMSFK 295
               + +  + ++     +ET L+    G +  D    +L+ ETR +L S ++++V++    
Sbjct:   229 GSKSLLCHYMMP---DEETPLAVQACGLSPRDVTTIKLLNETRDMLESPDFSTVLNTCLS 285

Query:   296 AAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMSPSLLAE-PSNNR 341
                  L+D M          +Q G S+ S     +PLAK++P +     S+ +E PS+  
Sbjct:   286 RGFSRLLDNMAEFFRPTEQDLQHGNSINSLSSVSLPLAKIIPIINGQIHSVCSETPSH-- 343

Query:   342 IIQVIRTIPEVELFFTLLYANMS 364
              +Q +  + +V+ F   +Y   S
Sbjct:   344 FVQDLLMMEQVKDFAANVYEAFS 366

GO:0007031 "peroxisome organization" evidence=IEA

GO:0005779 "integral to peroxisomal membrane" evidence=IEA

UNIPROTKB|F1N5H3 PEX3 "Peroxisomal biogenesis factor 3" [Bos taurus (taxid:9913)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 96/383 (25%), Positives = 191/383 (49%)

Query:     6 DFWRRHRRK-IFITTXXXXXXXXXXXXXDSQRRIADL-DRQQCEHDELLKAQMQAHYEEV 63
             +F +RH++K IF+ T               Q++I ++ +R+  E+  + +A+ Q H+E  
Sbjct:     7 NFLKRHKKKCIFLGTVLGGVYILGKY---GQKKIREIQEREAAEY--IAQARRQYHFESN 61

Query:    64 QRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSF 123
             QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+ LKI+SF
Sbjct:    62 QRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KTRP-----SNKLEIWEDLKIISF 112

Query:   124 TKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSXXXXXXXXXXXXQQKFLASVD 183
             T+ +VA+++  M+ + +RVQ+NI+G ++Y+D A  +G +            QQ++L+S+ 
Sbjct:   113 TRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKNGTTVLAPPDV--QQQYLSSIQ 169

Query:   184 YLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFL 243
             +L   G+  +I+ ++ A  + L    L+   + + L +   +I ++ +       W++  
Sbjct:   170 HLLGDGLTELITVIKQAVQKILGSVSLKHSLSLLDLEQKLKEIRDL-VEQHKSSSWINND 228

Query:   244 MPQDIRFYKLVTASGHDETTLS----GATKFD----ELMVETRAVLSSAEYTSVVDMSFK 295
               + +  + ++     +ET L+    G +  D    +L+ ETR +L S ++++V++    
Sbjct:   229 GSKSLLCHYMMP---DEETPLAVQACGLSPRDVTTIKLLNETRDMLESPDFSTVLNTCLS 285

Query:   296 AAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMSPSLLAE-PSNNR 341
                  L+D M          +Q G S+ S     +PLAK++P +     S+ +E PS+  
Sbjct:   286 RGFSRLLDNMAEFFRPTEQDLQHGNSINSLSSVSLPLAKIIPIINGQIHSVCSETPSH-- 343

Query:   342 IIQVIRTIPEVELFFTLLYANMS 364
              +Q +  + +V+ F   +Y   S
Sbjct:   344 FVQDLLMMEQVKDFAANVYEAFS 366

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0045046 "protein import into peroxisome membrane" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0032994 "protein-lipid complex" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005779 "integral to peroxisomal membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1929646 Pex3 "peroxisomal biogenesis factor 3" [Mus musculus (taxid:10090)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 101/389 (25%), Positives = 188/389 (48%)

Query:     3 SLSDFWRRHRRK-IFITTXXXXXXXXXXXXXDSQRRIADL-DRQQCEHDELLKAQMQAHY 60
             S+ +F +RH++K IF+ T               Q++I ++ +R+  E+  + +A+ Q H+
Sbjct:     4 SMWNFLKRHKKKCIFLGTVLGGVYILGKY---GQKKIREIQEREAAEY--IAQARRQYHF 58

Query:    61 EEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKI 120
             E  QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+ LKI
Sbjct:    59 ESNQRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KSRP-----SNKLEIWEDLKI 109

Query:   121 LSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSXXXXXXXXXXXXQQKFLA 180
             +SFT+ +VA+++  M+ + +RVQ+NI+G ++Y+D A  +G +            QQ++L+
Sbjct:   110 ISFTRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNAT-VGKNGTTVLAPPDV--QQQYLS 166

Query:   181 SVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQ-- 238
             S+ +L   G+  +++ ++ A    L    L+   + + L +   +I  + +     HQ  
Sbjct:   167 SIQHLLGDGLTELVTVIKQAVQRILGSVSLKHSLSLLDLEQKLKEI-RILVEQ---HQSS 222

Query:   239 WVDFLMPQDIRFYKLVTASGHDETTLSGATKFD---------ELMVETRAVLSSAEYTSV 289
             W D    +D+    L      DE T   A  +          +L+ ETR +L S ++++V
Sbjct:   223 WND----KDVSRSSLCQYMMPDEETPLAAQAYGLSHRDITTIKLLNETRDMLESPDFSTV 278

Query:   290 VDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMSPSLLAE 336
             ++         L+D M          +Q G S+ S     +PLAK++P V     S+ +E
Sbjct:   279 LNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSINSLSSVSLPLAKIIPIVNGQIHSVCSE 338

Query:   337 -PSNNRIIQVIRTIPEVELFFTLLYANMS 364
              PS+   +Q +  + +V+ F   +Y   S
Sbjct:   339 TPSH--FVQDLLMMEQVKDFAANVYEAFS 365

GO:0005777 "peroxisome" evidence=ISO

GO:0005778 "peroxisomal membrane" evidence=ISO

GO:0005779 "integral to peroxisomal membrane" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0007031 "peroxisome organization" evidence=ISO

GO:0008289 "lipid binding" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016557 "peroxisome membrane biogenesis" evidence=ISO

GO:0032994 "protein-lipid complex" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0045046 "protein import into peroxisome membrane" evidence=ISO

GO:0046983 "protein dimerization activity" evidence=ISO

UNIPROTKB|E2R9C7 PEX3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 96/383 (25%), Positives = 189/383 (49%)

Query:     6 DFWRRHRRK-IFITTXXXXXXXXXXXXXDSQRRIADL-DRQQCEHDELLKAQMQAHYEEV 63
             +F +RH++K IF+ T               Q++I ++ +R+  E+  + +A+ Q H+E  
Sbjct:     7 NFLKRHKKKCIFLGTVLGGVYILGKY---GQKKIREIQEREAAEY--IAQARRQYHFESN 61

Query:    64 QRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSF 123
             QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+ LKI+SF
Sbjct:    62 QRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KNRP-----SNKLEIWEDLKIISF 112

Query:   124 TKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSXXXXXXXXXXXXQQKFLASVD 183
             T+ +VA+++  M+ + +RVQ+NI+G ++Y+D A  +G +            QQ++L+S+ 
Sbjct:   113 TRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKNGTTVLAPPDV--QQQYLSSIQ 169

Query:   184 YLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFL 243
             +L   G+  +I+ ++ A  + L    L+   + + L +   +I  + +       W++  
Sbjct:   170 HLLGDGLTELITVIKQAVQKILGSVSLKHSLSLLDLEQKLKEIRNL-VEQHKSSSWINKD 228

Query:   244 MPQDIRFYKLVTASGHDETTLS----GATKFD----ELMVETRAVLSSAEYTSVVDMSFK 295
               + +  + ++     +ET L+    G +  D    +L+ ETR +L S ++++V++    
Sbjct:   229 ESKSLLCHYMMP---DEETPLAVQACGLSPRDVTTIKLLNETRDMLESPDFSTVLNTCLN 285

Query:   296 AAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMSPSLLAE-PSNNR 341
                  L+D M          +Q   S+ S     +PLAK++P V     S+ +E PS+  
Sbjct:   286 RGFSRLLDNMAEFFRPTEQDLQHSNSMSSLSSVSLPLAKIIPIVNGQIHSVCSETPSH-- 343

Query:   342 IIQVIRTIPEVELFFTLLYANMS 364
              +Q +  + +V+ F   +Y   S
Sbjct:   344 FVQDLLMMEQVKDFAANVYEAFS 366

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0045046 "protein import into peroxisome membrane" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0032994 "protein-lipid complex" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005779 "integral to peroxisomal membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1S714 PEX3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 95/383 (24%), Positives = 191/383 (49%)

Query:     6 DFWRRHRRK-IFITTXXXXXXXXXXXXXDSQRRIADL-DRQQCEHDELLKAQMQAHYEEV 63
             +F +RH++K IF+ T               Q++I ++ +R+  E+  + +A+ Q H+E  
Sbjct:     7 NFLKRHKKKCIFLGTVLGGIYILGKY---GQKKIREIQEREAAEY--IAQARRQYHFESN 61

Query:    64 QRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSF 123
             QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+ LKI+SF
Sbjct:    62 QRTCNMTVLS-MLPTLREALMQQLNSESLTVLL---KNRP-----SNKLEIWEDLKIISF 112

Query:   124 TKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSXXXXXXXXXXXXQQKFLASVD 183
             T+ +VA+++  M+ + +RVQ+NI+G ++Y+D A  +G +            QQ++L+S+ 
Sbjct:   113 TRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKNGTTVLAPPDV--QQQYLSSIQ 169

Query:   184 YLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFL 243
             +L   G+  +I+ ++ +  + L    L+   + + L +   +I ++ +       W++  
Sbjct:   170 HLLGDGLTELITVIKQSVQKILGSVSLKHSLSLLDLEQKLKEIRDL-VEQHKSSSWINKD 228

Query:   244 MPQDIRFYKLVTASGHDETTLS----GATKFD----ELMVETRAVLSSAEYTSVVDMSFK 295
               + +  + ++     +ET L+    G +  D    +L+ ETR +L S ++++V+++   
Sbjct:   229 GSRSLLCHYMMP---DEETPLAVQACGLSPRDVTTIKLLNETRDMLESPDFSTVLNICLN 285

Query:   296 AAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMSPSLLAE-PSNNR 341
                  L+D M          +Q G S  S     +PLAK++P +     S+ +E PS+  
Sbjct:   286 RGFSRLLDNMAEFFRPTEQDLQHGNSRNSLSSVSLPLAKIIPIINGQIHSVCSETPSH-- 343

Query:   342 IIQVIRTIPEVELFFTLLYANMS 364
              +Q +  + +V+ F   +Y   S
Sbjct:   344 FVQDLLMMEQVKDFAANVYEAFS 366

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0045046 "protein import into peroxisome membrane" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0032994 "protein-lipid complex" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005779 "integral to peroxisomal membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8S9K7	PEX32_ARATH	No assigned EC number	0.5741	0.9535	0.9587	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_XII0062 hypothetical protein (374 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	366
pfam04882	399	pfam04882, Peroxin-3, Peroxin-3	5e-79

>gnl|CDD|218308 pfam04882, Peroxin-3, Peroxin-3

 Score =  247 bits (633), Expect = 5e-79
 Identities = 112/416 (26%), Positives = 183/416 (43%), Gaps = 70/416 (16%)

Query: 1   MLSLSDFWRRHRRKIFITTGVLGGGYLLY-----KLYDSQRRIADLDRQQCEHDELLKAQ 55
           + S   F RRHRRK  +T GV+GGGYLL      KL + Q R+A         +   K Q
Sbjct: 1   LSSTRSFLRRHRRKFIVTGGVIGGGYLLTQYVQKKLREFQERLA--------EERFAKEQ 52

Query: 56  MQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGK--------------- 100
           ++  +E+ QR  + T L   +  LS  I E L +  +T+KL + K               
Sbjct: 53  IKRRFEQTQRDCNYTVLAL-LPTLSEPILEALPVEEITEKLQQKKAESAARTGENSDSEL 111

Query: 101 ----------EQPYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRH 150
                       P   S   KLELW+ LKI S T+L+  +++++M++L  R+Q+NILGR 
Sbjct: 112 TSASASEADESSPSPYSPKSKLELWNELKIKSITRLITLVYSLSMLTLLTRLQLNILGRR 171

Query: 151 LYIDTARGLGSS----DLPDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALK 206
            Y+D+A  L S     +       D + +Q +L+   +L N G   +I  V+ A +E   
Sbjct: 172 SYLDSAISLASGTENEESDLISGSDYETEQAYLSLSWWLLNKGWLDLIDRVEKAVEEVFG 231

Query: 207 GKQLRDIFNTVVLHETFMQILEVFMSMGSPHQ--WVDFLMPQDIRFYKLVTASGHDETTL 264
           G   +D  +     E   +I  +  S     +   + +L+P D         S  D    
Sbjct: 232 GINPKDELSLAEFEELLKEIRNLVNSSDENKERSILKYLLPND----LPTPLSSLDIND- 286

Query: 265 SGATKFDELMVETRAVLSSAEYTSV----VDMSFKAAVDALIDEMRVQSGGSLISG---- 316
              +K  +L+ ETR +L S +++ V    VD  F   +D L + +  +S  +        
Sbjct: 287 ---SKLRKLLNETRDILESPDFSDVLESLVDEGFSTLLDNLAESLAFKSLPTSQDSLNVE 343

Query: 317 ---------MPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLLYANM 363
                      LAKL+P + +    +L   S N  +Q + ++ E++ F   +Y+N 
Sbjct: 344 SIVDLPSVKFKLAKLLPVINRQIHVILNNDSPNEYLQALNSVEELKDFSASVYSNF 399

Peroxin-3 is a peroxisomal protein. It is thought to be involve in membrane vesicle assembly prior to the translocation of matrix proteins. Length = 399

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	366
PF04882	432	Peroxin-3: Peroxin-3; InterPro: IPR006966 Peroxin	100.0
KOG4444	359	consensus Peroxisomal assembly protein PEX3 [Cell	100.0

>PF04882 Peroxin-3: Peroxin-3; InterPro: IPR006966 Peroxin 3 (Pex3p), also known as Peroxisomal biogenesis factor 3, has been identified and characterised as a peroxisomal membrane protein in yeasts and mammals []

Probab=100.00  E-value=8.8e-96  Score=739.91  Aligned_cols=358  Identities=34%  Similarity=0.553  Sum_probs=252.6

Q ss_pred             cchhHHHHHhcCCeEEeeeeeeeeeehhHhhHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHH
Q 017762            2 LSLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADLDRQQCEHDELLKAQMQAHYEEVQRIADATTLPHAMHYLSI   81 (366)
Q Consensus         2 ~s~~~f~~RhR~k~~~~~~v~G~~y~~~~y~~~~~kl~e~q~~~~~~e~~~ke~lrr~FeqtQ~~c~~t~l~~llp~l~~   81 (366)
                      .|+|+|++||||||++|||++||||++++|.  ++|+.|+| ++...|+++|||+||||||||+||++||+ +|||+|++
T Consensus         2 ~~~~~f~~Rhr~k~~~~~~v~g~~y~~~~y~--~~kl~e~q-~~~~~e~~~ke~~~r~Feq~q~~c~~tv~-~llp~l~~   77 (432)
T PF04882_consen    2 SSLRSFFRRHRRKIIVTGGVVGGGYLLYQYA--QKKLREQQ-ERMAEERFAKEQLRRRFEQTQRDCDFTVL-ALLPTLSE   77 (432)
T ss_dssp             ----------------------------------------H-HHHHHHHHHHHCHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             Ccccccccccccccccccccccccccccccc--cccccccc-ccccccccccccccccccccccccccccc-cccccccc
Confidence            4899999999999999999999999999984  45899987 45677999999999999999999999886 89999999


Q ss_pred             HHHHhcCchHHHHHHHccCCCCC-----------------------------------CCCchhHHHHHHHHHHHHHHHH
Q 017762           82 RIAEELDLSPLTDKLLRGKEQPY-----------------------------------TLSSSEKLELWDRLKILSFTKL  126 (366)
Q Consensus        82 ~I~~~ld~e~it~~Lk~~k~~~~-----------------------------------~l~~~~K~eLW~eLKi~sftR~  126 (366)
                      +|++++|||+||++||++|+++.                                   ..++++|+||||||||+||||+
T Consensus        78 ~i~~~ld~e~i~~~L~~~k~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~K~eLW~eLKi~sftR~  157 (432)
T PF04882_consen   78 RILEELDVEEITEELKQKKAQRKARQAAQSDSESSDSELTSDNLSSASEANESSSKSSPLSPKSKLELWNELKIKSFTRT  157 (432)
T ss_dssp             HHHHHS-HHHHHHHHCT---------------------------------------------SSHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCchHHHHHHHHHHHHHHHHH
Confidence            99999999999999999986432                                   2348999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC-----------CCCCCCChHHHHHHHHHHHHHHHhhHHHHHH
Q 017762          127 VVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDL-----------PDADLIDRDDQQKFLASVDYLANYGMQAMIS  195 (366)
Q Consensus       127 ~t~iY~~slL~Ll~rvQLNiLgr~~Yl~s~~~~~~~~l-----------~~~~~~d~~~eq~yLs~s~~ll~~G~~~l~~  195 (366)
                      +|++|++|||+|+||+||||||||.|++|+...+++..           ......|.++||+||++||||||+||.++++
T Consensus       158 vt~iY~~slL~LltRvQLNILGR~~Yl~S~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~eq~fLs~swwLL~~Gw~~l~~  237 (432)
T PF04882_consen  158 VTLIYALSLLTLLTRVQLNILGRRLYLDSVISLASEQENSNSSLISLESSSARGVDYETEQKFLSLSWWLLNRGWKELIE  237 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC----HHTSSSSS---SS-----------HHHHHHHHGGGHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCccccccccccccccccHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            99999999999999999999999999999876543221           1112356899999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCcccCHHHHHHHHHHHHHHHhc--CC----CCccccccccccc-hhhhhhhcc---CCCCccccc
Q 017762          196 NVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMS--MG----SPHQWVDFLMPQD-IRFYKLVTA---SGHDETTLS  265 (366)
Q Consensus       196 ~V~~~V~~vf~~~~lk~~ls~~el~~l~~~i~~~~e~--~~----~~~~~~~~LLP~~-~~~~~~~~~---~~~~~~~~~  265 (366)
                      +|+++|++||++++||+.+|++||++++++||..|++  ..    ..++|++|||||. .+.+++..+   +++......
T Consensus       238 ~Ve~aV~~vf~~~~lkd~lsl~e~~~ll~~Ir~~ve~~~~~~~~~~~~~~~~~LLP~~~~e~~~L~~~~~~~~~~~~~~~  317 (432)
T PF04882_consen  238 RVEEAVEEVFGSISLKDELSLEEFSELLWQIRKRVESSSDTSDSRPRSNWLSYLLPPEEEEDFVLQQTGDNPSSLSSLPQ  317 (432)
T ss_dssp             HHHHHHHHHHTTS-TT-EEEHHHHHHHHHHHHHHHHT------------CHHHCS----TTS-GGGTS-------TT--C
T ss_pred             HHHHHHHHHhCCCCcCcccCHHHHHHHHHHHHHHHHhhcCCccccchhhHHHhhCCCCchhHHHHHhcccccccccCCCC
Confidence            9999999999999999999999999999999999987  11    1467999999964 334444332   233333346


Q ss_pred             chhHHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHhhcCC-----------------CCCCCCcccchhhhhhh
Q 017762          266 GATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGG-----------------SLISGMPLAKLVPRVVQ  328 (366)
Q Consensus       266 ~~~~l~~Ll~ET~d~leS~~f~~Vl~~~l~~~f~~l~~~~~~~~~~-----------------~~~~~~~LAklLP~v~~  328 (366)
                      +++.|++|+|||+|+||||+|++|++.|+|++|+.+++++.+.+.+                 .++.++||||+||++++
T Consensus       318 ~~~~l~~Ll~ET~d~leS~~f~~Vl~~~l~~~f~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LAklLp~l~~  397 (432)
T PF04882_consen  318 DDSILRQLLDETRDVLESPDFSHVLESCLDEGFSTLMDNLEASFGSKSPSSPQSDLDQEEEVDIPKKKIPLAKLLPILNR  397 (432)
T ss_dssp             CHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHCCG-----------------------EEEHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCCcccccCCCCCcchHHHHHHHHHH
Confidence            7899999999999999999999999999999999999999876621                 12357999999999999


Q ss_pred             hcccccCCCCchHHHHHHcCcchHHHHHHHHhcCC
Q 017762          329 MSPSLLAEPSNNRIIQVIRTIPEVELFFTLLYANM  363 (366)
Q Consensus       329 ~~~~l~~~~~~n~~l~~l~~~~el~~f~A~vYs~~  363 (366)
                      |+|.++.++.||+|++.|.+++||++|+|+||+||
T Consensus       398 q~~~i~~~~~~N~yl~~l~~v~eL~~fsA~VYsnF  432 (432)
T PF04882_consen  398 QSHVILNGPMPNEYLQRLNSVPELEDFSASVYSNF  432 (432)
T ss_dssp             THHHHT-TT-TTCHHHHHHT-HHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCChhHHHHHHHccHHHHHHhHHHhhcC
Confidence            99999876669999999999999999999999987

Two putative peroxisomal membrane-bound Pex3p homologues have also been found in Arabidopsis thaliana []. They possess a membrane peroxisomal targeting signal. Pex3p is an integral membrane protein of peroxisomes, exposing its N- and C-terminal parts to the cytosol []. Peroxin is involved in peroxisome biosynthesis and integrity; it assembles membrane vesicles before the matrix proteins are translocated. In humans, defects in PEX3 are the cause of peroxisome biogenesis disorders [], which include Zellweger syndrome (ZWS), neonatal adrenoleukodystrophy (NALD), infantile Refsum disease (IRD), and classical rhizomelic chondrodysplasia punctata (RCDP). These are peroxisomal disorders that are the result of proteins failing to be imported into the peroxisome.; GO: 0007031 peroxisome organization, 0005779 integral to peroxisomal membrane; PDB: 3MK4_A 3AJB_A.

>KOG4444 consensus Peroxisomal assembly protein PEX3 [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.7e-78  Score=566.89  Aligned_cols=346  Identities=30%  Similarity=0.484  Sum_probs=302.6

Q ss_pred             Cc-chhHHHHHhcCCeEEeeeeeeeeeehhHhhHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHH
Q 017762            1 ML-SLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADLDRQQCEHDELLKAQMQAHYEEVQRIADATTLPHAMHYL   79 (366)
Q Consensus         1 M~-s~~~f~~RhR~k~~~~~~v~G~~y~~~~y~~~~~kl~e~q~~~~~~e~~~ke~lrr~FeqtQ~~c~~t~l~~llp~l   79 (366)
                      |+ +.|+|++|||||+|++|+++||||++++|+  ++++++.| ++..+|.|.++|+++||||||++|++||+ .++|++
T Consensus         1 ml~~~~~flkRHr~Kvivtg~lvGs~~~~~k~~--~r~~~~~q-er~a~E~~~qarrk~hFEStqrtcd~til-~llp~l   76 (359)
T KOG4444|consen    1 MLQRSWSFLKRHRGKVIVTGVLVGSGIVLVKYV--QRWLREQQ-EREAEEHFIQARRKYHFESTQRTCDQTIL-ELLPVL   76 (359)
T ss_pred             CchhHHHHHHHhcCcEEEEEEEecceEEEEeee--chHHHHHH-HHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHH
Confidence            78 999999999999999999999999999995  45788765 23344778889999999999999999987 699999


Q ss_pred             HHHHHHhcCchHHHHHHHccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 017762           80 SIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGL  159 (366)
Q Consensus        80 ~~~I~~~ld~e~it~~Lk~~k~~~~~l~~~~K~eLW~eLKi~sftR~~t~iY~~slL~Ll~rvQLNiLgr~~Yl~s~~~~  159 (366)
                      +.+|.+++|+|+|+++||++.    .++|++|+||||||||.||||+++.+|++|||.+++|+||||||||.|+|++...
T Consensus        77 ~~~i~eeldvdsi~eqLkqk~----~Ltp~~KleLWeeLKI~sftrl~~~vysvsmLvl~lRvQlNILgr~iYlD~a~~l  152 (359)
T KOG4444|consen   77 RMAINEELDVDSIVEQLKQKN----QLTPKNKLELWEELKIKSFTRLVTVVYSVSMLVLLLRVQLNILGRYIYLDSAIKL  152 (359)
T ss_pred             HHHHHHHcCHHHHHHHHhhCC----CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhh
Confidence            999999999999999999943    3789999999999999999999999999999999999999999999999999876


Q ss_pred             CCCCCCCCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHHHHHHHHhcCCCCccc
Q 017762          160 GSSDLPDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQW  239 (366)
Q Consensus       160 ~~~~l~~~~~~d~~~eq~yLs~s~~ll~~G~~~l~~~V~~~V~~vf~~~~lk~~ls~~el~~l~~~i~~~~e~~~~~~~~  239 (366)
                      ..     .+.++.+.||+|||.+.||..+|+..++..++.+|.+|+++.++++.+|+-++++.+++|+..+|..++|++|
T Consensus       153 ~~-----v~l~~~dlqqqfls~i~~l~tdam~~la~~ik~~~qeVlk~~qlk~slS~~~Leq~~~qi~n~~e~~~dp~h~  227 (359)
T KOG4444|consen  153 KM-----VQLNCNDLQQQFLSSITHLWTDAMVMLAKKIKKEVQEVLKNEQLKLSLSLWDLEQGWLQITNQIEIEFDPIHW  227 (359)
T ss_pred             cc-----cccCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccHHHHhhHHHHHHHHHHHHHHHHhcCCCCch
Confidence            42     2446789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cc-cccccchhhhhhhccCCCCcccccchhHHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHhhcCC-----C-
Q 017762          240 VD-FLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGG-----S-  312 (366)
Q Consensus       240 ~~-~LLP~~~~~~~~~~~~~~~~~~~~~~~~l~~Ll~ET~d~leS~~f~~Vl~~~l~~~f~~l~~~~~~~~~~-----~-  312 (366)
                      .+ |++|+.+....-.+++.+|.+    .....+|.-||+++|+|++|+.|++.|++++   +++.++..+.+     . 
T Consensus       228 ~dkylm~~qnt~ls~~as~~~d~d----vst~f~l~~Etrq~L~st~~stvle~sln~~---~~~~~g~~t~~~e~~~q~  300 (359)
T KOG4444|consen  228 RDKYLMPFQNTPLSFLASGTSDAD----VSTSFHLNTETRQCLESTAFSTVLESSLNES---IMNKVGIKTIAKEKPLQE  300 (359)
T ss_pred             HhhhcCCCCCCchhhHhccCChHH----HHHHHHHhHHHHHHhcchhHHHHHHHHHhhh---hhccccceeecccCcccc
Confidence            99 999985442221233334432    2455566679999999999999999999998   66666554411     1 


Q ss_pred             -----CCCCCcccchhhhhhhhcccccCCCCchHHHHHHcCcchHHHHHHHHhcCCCCC
Q 017762          313 -----LISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLLYANMSDS  366 (366)
Q Consensus       313 -----~~~~~~LAklLP~v~~~~~~l~~~~~~n~~l~~l~~~~el~~f~A~vYs~~~~~  366 (366)
                           .....||||++|+++++.+.+..+|+.|+|+|.+..++++++|+|+||+||+-+
T Consensus       301 gn~~~~~v~~alAk~ip~ie~l~~~~tseps~n~flq~l~~~e~~kdl~anvye~f~~~  359 (359)
T KOG4444|consen  301 GNQQYQMVVLALAKKIPIIEGLQTTATSEPSGNEFLQTLDSVEPLKDLSANVYENFSVS  359 (359)
T ss_pred             cchHHHHHHHHHHHhhhhhhccccccccCCCcchHHHHHHhchhhhHHHhhhhhhccCC
Confidence                 124689999999999999999988878999999999999999999999999853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	366
3mk4_A	334	X-Ray Structure Of Human Pex3 In Complex With A Pex		1e-19
3ajb_A	330	Crystal Structure Of Human Pex3p In Complex With N-		1e-19

>pdb|3MK4|A Chain A, X-Ray Structure Of Human Pex3 In Complex With A Pex19 Derived Peptide Length = 334

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 171/350 (48%), Gaps = 52/350 (14%)
Query: 42  DRQQCEHDELLKAQMQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKE 101
           +R+  E+  + +A+ Q H+E  QR  + T L   +  L   + ++L+   LT  L   K 
Sbjct: 3   EREAAEY--IAQARRQYHFESNQRTCNMTVL-SMLPTLREALMQQLNSESLTALL---KN 56
Query: 102 QPYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGS 161
           +P     S KLE+W+ LKI+SFT+  VA+++  M+ + +RVQ+NI+G ++Y+D A  +G 
Sbjct: 57  RP-----SNKLEIWEDLKIISFTRSTVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGK 110
Query: 162 SXXXXXXXXXXXXQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHE 221
           +            QQ++L+S+ +L   G+  +I+ ++ A  + L    L+   + + L +
Sbjct: 111 N--GTTILAPPDVQQQYLSSIQHLLGDGLTELITVIKQAVQKVLGSVSLKHSLSLLDLEQ 168
Query: 222 TFMQILEVFMSMGSPHQWVD----------FLMPQDIRFYKLVTASG---HDETTLSGAT 268
              +I  +     S   W++          ++MP D      V A G    D TT+    
Sbjct: 169 KLKEIRNLVEQHKS-SSWINKDGSKPLLSHYMMP-DEETPLAVQACGLSPRDITTI---- 222
Query: 269 KFDELMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMR---------VQSGGSLIS---- 315
              +L+ ETR +L S ++++V++         L+D M          +Q G S+ S    
Sbjct: 223 ---KLLNETRDMLESPDFSTVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSV 279
Query: 316 GMPLAKLVPRVVQMSPSLLAE-PSNNRIIQVIRTIPEVELFFTLLYANMS 364
            +PLAK++P V     S+ +E PS+   +Q + T+ +V+ F   +Y   S
Sbjct: 280 SLPLAKIIPIVNGQIHSVCSETPSH--FVQDLLTMEQVKDFAANVYEAFS 327

>pdb|3AJB|A Chain A, Crystal Structure Of Human Pex3p In Complex With N-Terminal Pex19p Peptide Length = 330

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 165/339 (48%), Gaps = 50/339 (14%)
Query: 53  KAQMQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKL 112
           +A+ Q H+E  QR  + T L   +  L   + ++L+   LT  L   K +P     S KL
Sbjct: 8   QARRQYHFESNQRTCNMTVL-SMLPTLREALMQQLNSESLTALL---KNRP-----SNKL 58
Query: 113 ELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSXXXXXXXXXX 172
           E+W+ LKI+SFT+  VA+++  M+ + +RVQ+NI+G ++Y+D A  +G +          
Sbjct: 59  EIWEDLKIISFTRSTVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKN--GTTILAPP 115
Query: 173 XXQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMS 232
             QQ++L+S+ +L   G+  +I+ ++ A  + L    L+   + + L +   +I  +   
Sbjct: 116 DVQQQYLSSIQHLLGDGLTELITVIKQAVQKVLGSVSLKHSLSLLDLEQKLKEIRNLVEQ 175
Query: 233 MGSPHQWVD----------FLMPQDIRFYKLVTASG---HDETTLSGATKFDELMVETRA 279
             S   W++          ++MP D      V A G    D TT+       +L+ ETR 
Sbjct: 176 HKS-SSWINKDGSKPLLCHYMMP-DEETPLAVQACGLSPRDITTI-------KLLNETRD 226
Query: 280 VLSSAEYTSVVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRV 326
           +L S ++++V++         L+D M          +Q G S+ S     +PLAK++P V
Sbjct: 227 MLESPDFSTVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIV 286
Query: 327 VQMSPSLLAE-PSNNRIIQVIRTIPEVELFFTLLYANMS 364
                S+ +E PS+   +Q + T+ +V+ F   +Y   S
Sbjct: 287 NGQIHSVCSETPSH--FVQDLLTMEQVKDFAANVYEAFS 323
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	366
3mk4_A	334	Peroxisomal biogenesis factor 3; membrane, peroxis	2e-55
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>3mk4_A Peroxisomal biogenesis factor 3; membrane, peroxisome, protein transport; 2.42A {Homo sapiens} PDB: 3ajb_A Length = 334

 Score =  184 bits (467), Expect = 2e-55
 Identities = 77/341 (22%), Positives = 149/341 (43%), Gaps = 30/341 (8%)

Query: 43  RQQCEHDELLKAQMQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQ 102
           +++   + + +A+ Q H+E  QR  + T L   +  L   + ++L+   LT  L      
Sbjct: 2   QEREAAEYIAQARRQYHFESNQRTCNMTVLS-MLPTLREALMQQLNSESLTALLKNRP-- 58

Query: 103 PYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSS 162
                 S KLE+W+ LKI+SFT+  VA+++  M+ + +RVQ+NI+G ++Y+D A    + 
Sbjct: 59  ------SNKLEIWEDLKIISFTRSTVAVYSTCMLVVLLRVQLNIIGGYIYLDNAAVGKNG 112

Query: 163 DLPDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHET 222
                 L   D QQ++L+S+ +L   G+  +I+ ++ A  + L    L+   + + L + 
Sbjct: 113 ---TTILAPPDVQQQYLSSIQHLLGDGLTELITVIKQAVQKVLGSVSLKHSLSLLDLEQK 169

Query: 223 FMQILEVFMSMGSPHQWVDFLMPQDIRFYKLVTASGHDETTLSGAT----KFDELMVETR 278
             +I  +     S            +  Y +            G +       +L+ ETR
Sbjct: 170 LKEIRNLVEQHKSSSWINKDGSKPLLSHYMMPDEETPLAVQACGLSPRDITTIKLLNETR 229

Query: 279 AVLSSAEYTSVVDMSFKAAVDALIDEMRV-------------QSGGSLISGMPLAKLVPR 325
            +L S ++++V++         L+D M                        +PLAK++P 
Sbjct: 230 DMLESPDFSTVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPI 289

Query: 326 VVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLLYANMSDS 366
           V     S+ +E   +  +Q + T+ +V+ F   +Y   S  
Sbjct: 290 VNGQIHSVCSET-PSHFVQDLLTMEQVKDFAANVYEAFSTP 329

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 2e-09
 Identities = 64/373 (17%), Positives = 118/373 (31%), Gaps = 100/373 (26%)

Query: 2   LSLSDFWRR-------HRRKIFITTG------VLGGGYLLYKLYDSQRRIADLDRQQCEH 48
           L L +              KI +TT        L           +     D        
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT-------TTHISLDHHSMTLTP 300

Query: 49  DELLKAQMQAHYEEVQRIADATTLPHAMH-----YLSIRIAEELDLSPLT---------D 94
           DE+    +   Y +         LP  +       LSI IAE +     T         D
Sbjct: 301 DEVK--SLLLKYLDC----RPQDLPREVLTTNPRRLSI-IAESIRDGLATWDNWKHVNCD 353

Query: 95  KLLRGKEQPY-TLSSSEKLELWDRLKILSF-------TKLVVALWAVTMVSLYIRVQVNI 146
           KL    E     L  +E  +++DRL +  F       T L+  +W   ++   + V VN 
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSV--FPPSAHIPTILLSLIWF-DVIKSDVMVVVNK 410

Query: 147 LGR----------------HLYIDTARGLGSSDLPD--ADLIDRDDQQK-------FLAS 181
           L +                 +Y++    L   +       ++D  +  K           
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKL--ENEYALHRSIVDHYNIPKTFDSDDLIPPY 468

Query: 182 VD-YLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQ--ILEVFMSMGSPHQ 238
           +D Y  ++    +        +   +    R +F    L   F++  I     +  +   
Sbjct: 469 LDQYFYSHIGHHL-----KNIEHPERMTLFRMVF----LDFRFLEQKIRHDSTAWNASGS 519

Query: 239 WVDFLMPQDIRFYK--LVTASGHDETTLSGATKFDELM-VETRAVLSSAEYTSVVDMSFK 295
            ++ L  Q ++FYK  +       E  ++    F  L  +E   + S  +YT ++ ++  
Sbjct: 520 ILNTL--QQLKFYKPYICDNDPKYERLVNAILDF--LPKIEENLICS--KYTDLLRIALM 573

Query: 296 AAVDALIDEMRVQ 308
           A  +A+ +E   Q
Sbjct: 574 AEDEAIFEEAHKQ 586

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 55/345 (15%), Positives = 102/345 (29%), Gaps = 109/345 (31%)

Query: 26  YLLYKLYDSQRRIADLDRQQCEHDELLKAQMQAHYE-EVQRIADATTLPHAMH--YLSIR 82
            L + L   Q  +           + ++  ++ +Y+  +  I      P  M   Y+  R
Sbjct: 66  RLFWTLLSKQEEMVQ---------KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116

Query: 83  IAEELDLSPLTDKLLRGKE--QPYTLSSSEK-LELWDRLKILSFTKLVVAL--------- 130
                      D+L    +    Y +S  +  L+L   L  L   K V+ +         
Sbjct: 117 -----------DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL-IDGVLGSGKT 164

Query: 131 WAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPDADLIDRDDQQKFLASVDYLANY-- 188
           W    V L  +VQ  +  +  +++    L + + P+  L   +  QK L  +D   N+  
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLN----LKNCNSPETVL---EMLQKLLYQID--PNWTS 215

Query: 189 ---GMQAMISNVQAAADEA---LKGKQ-------LRDIFNTVVLHETFMQILEVFMSMGS 235
                  +   + +   E    LK K        L ++ N         +    F     
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--------KAWNAF----- 262

Query: 236 PHQWVDFLMPQDIRFYKLVTASGHDETT-LSGATKFDELMVETRAVLSSAEYTSVVDMSF 294
                      ++    L+T      T  LS AT     +      L+  E  S++    
Sbjct: 263 -----------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL---- 307

Query: 295 KAAVDALIDEMRVQSGGSLISGMPLAKLVPRVVQMSP---SLLAE 336
                                      L   V+  +P   S++AE
Sbjct: 308 -----------------LKYLDCRPQDLPREVLTTNPRRLSIIAE 335

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	366
3mk4_A	334	Peroxisomal biogenesis factor 3; membrane, peroxis	100.0

>3mk4_A Peroxisomal biogenesis factor 3; membrane, peroxisome, protein transport; 2.42A {Homo sapiens} PDB: 3ajb_A

Probab=100.00  E-value=1.2e-83  Score=627.49  Aligned_cols=302  Identities=26%  Similarity=0.397  Sum_probs=260.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHHHhcCchHHHHHHHccCCCCCCCCchhHHHHHHHHHHHHHHH
Q 017762           46 CEHDELLKAQMQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSFTK  125 (366)
Q Consensus        46 ~~~e~~~ke~lrr~FeqtQ~~c~~t~l~~llp~l~~~I~~~ld~e~it~~Lk~~k~~~~~l~~~~K~eLW~eLKi~sftR  125 (366)
                      ...|.++|+|+++||||||+||++||+ +++|+++++|++++|+|+||++||++        |++|+||||||||+||||
T Consensus         5 ~~~e~~~~ar~~~hFe~tQ~~c~~Tvl-~llp~l~~~i~~~ld~e~lt~~Lk~~--------~~~K~eLW~eLKi~s~TR   75 (334)
T 3mk4_A            5 EAAEYIAQARRQYHFESNQRTCNMTVL-SMLPTLREALMQQLNSESLTALLKNR--------PSNKLEIWEDLKIISFTR   75 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHTTC--------CSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHhC--------chHHHHHHHHHHHHHHHH
Confidence            355899999999999999999999886 99999999999999999999999985        679999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 017762          126 LVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEAL  205 (366)
Q Consensus       126 ~~t~iY~~slL~Ll~rvQLNiLgr~~Yl~s~~~~~~~~l~~~~~~d~~~eq~yLs~s~~ll~~G~~~l~~~V~~~V~~vf  205 (366)
                      ++|++|++|||+++||+||||||||.|++++....++   ....+|.++||+||++||||+|+||.+++++|+++|+++|
T Consensus        76 ~~t~iY~~slL~ll~RvQLNILGr~~Yl~sa~~~~~~---~~~~~~~~~qq~yLs~s~~ll~~G~~~l~~~Ve~~V~~v~  152 (334)
T 3mk4_A           76 STVAVYSTCMLVVLLRVQLNIIGGYIYLDNAAVGKNG---TTILAPPDVQQQYLSSIQHLLGDGLTELITVIKQAVQKVL  152 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---------CCCSSCHHHHHHHHGGGHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---CCCCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999997532221   1245789999999999999999999999999999999999


Q ss_pred             cCCCCCcccCHHHHHHHHHHHHHHHhcC---------CCCccccccccccchhhhhhhccCCCCcccccchhHHHHHHHH
Q 017762          206 KGKQLRDIFNTVVLHETFMQILEVFMSM---------GSPHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVE  276 (366)
Q Consensus       206 ~~~~lk~~ls~~el~~l~~~i~~~~e~~---------~~~~~~~~~LLP~~~~~~~~~~~~~~~~~~~~~~~~l~~Ll~E  276 (366)
                      ++++|||.+|+++|++++++||..+++.         ++.+.|++||||++.... ++.+++    ...+++.|++|+||
T Consensus       153 ~~~~lk~~ls~~~l~~l~~~Ir~~ve~~~~~~~~~~~~~~~~~~~yLlP~~~~~~-~~q~~~----~~~~~~~l~~Ll~E  227 (334)
T 3mk4_A          153 GSVSLKHSLSLLDLEQKLKEIRNLVEQHKSSSWINKDGSKPLLSHYMMPDEETPL-AVQACG----LSPRDITTIKLLNE  227 (334)
T ss_dssp             TTCCSSCEEEHHHHHHHHHHHHHHHHTC-------------CGGGGTSCCCCC-------------CCHHHHHHHHHHHH
T ss_pred             CCCCcccccCHHHHHHHHHHHHHHHhccccccccccCCcccchHHhcCCCchhHH-HHhccC----CCCccHHHHHHHHH
Confidence            9999999999999999999999999873         234789999999975432 222111    12345789999999


Q ss_pred             HHHhhcCHhHHHHHHHHHHHHHHHHHHHHHhhcCCC-------------CCCCCcccchhhhhhhhcccccCCCCchHHH
Q 017762          277 TRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGGS-------------LISGMPLAKLVPRVVQMSPSLLAEPSNNRII  343 (366)
Q Consensus       277 T~d~leS~~f~~Vl~~~l~~~f~~l~~~~~~~~~~~-------------~~~~~~LAklLP~v~~~~~~l~~~~~~n~~l  343 (366)
                      |+|+||||+|++|++.|+|++|+.++|++++.|++.             +..++||||+||+++||+|.++ +|.||+|+
T Consensus       228 T~d~leS~~f~~Vl~~~l~~~F~~l~d~~~~~f~~~~~~~~~~~~~~~~~~v~~~LAklLpvv~~q~~~i~-~~~pN~~l  306 (334)
T 3mk4_A          228 TRDMLESPDFSTVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIVNGQIHSVC-SETPSHFV  306 (334)
T ss_dssp             HHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCC-----------------CEEEHHHHHHHHHTTHHHHT-CCSTTSHH
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCcccccccccchhhhHHHHHHHHHhhhhhcc-cCCchHHH
Confidence            999999999999999999999999999998877321             1368999999999999999776 46899999


Q ss_pred             HHHcCcchHHHHHHHHhcCCCC
Q 017762          344 QVIRTIPEVELFFTLLYANMSD  365 (366)
Q Consensus       344 ~~l~~~~el~~f~A~vYs~~~~  365 (366)
                      |.|.++++|++|||+||++|+.
T Consensus       307 q~l~~~~el~~f~A~VY~sf~~  328 (334)
T 3mk4_A          307 QDLLTMEQVKDFAANVYEAFST  328 (334)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHhhHHHHHHHHHHHHHcCC
Confidence            9999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00