Citrus Sinensis ID: 017885

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360----
Protein Sequence
MTSCYSRLTAGSAASHSLLQSPKPSPKAPVSCYLRDHHANQRLPTTLLFRSSKRNYYHNNSNYKNNNVIYIVASAAAAERSDGHEAAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQALFICLLLPFLSKLWGIPFSQLPIYLRDGAACFLNLGTLSSGKLQFI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEccccccccccccccccccccccEHEEcccccccccEEEEEEccccccccccccccHHHEEEEEEccccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccccHHEHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHEEEEEEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccHEEEccccccccEEEEc
Coil and Loop (DISEMBL)
mtscysrltagsaashsllqspkpspkapvscylrdhhanqrlpttllfrsskrnyyhnnsnyknnNVIYIVASAAaaersdgheaavgdlvdkrksgertvEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAgivtdemlsmpkapFVAVGLLEALAAATGMAAGAilsgasipilSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVasgsnpghslkgaGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQALFICLLLPflsklwgipfsqlpiyLRDGAACFlnlgtlssgklqfi
Flexible Loop (DISEMBL)
MTSCYSRltagsaashsllqspkpsPKAPVSCYLRDHHANQRLPTTLLFRSSKRNYYhnnsnyknnnVIYIVASAAAAERSDGHEAAVgdlvdkrksgertvefnvisksndrrvEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQALFICLLLPFLSKLWGIPFSQLPIYLRDGAACFLNlgtlssgklqfi
Low Complexity Region (SEG)
MTSCYSRLTAGSAASHSLLQSPKPSPKAPVSCYLRDHHANQRLPTTLLFrsskrnyyhnnsnyknnnVIYIVASAAAAERSDGHEAAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVavgllealaaatgmaagaILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQALFICLLLPFLSKLWGIPFSQLPIYLRDGAACFLNLGTLSSGKLQFI
Disordered region (IsUnstruct)
*******************************CYLRDHHANQRLPTTLLFRSSKRNYYHNNSNYKNNNVIYIVASAAA************************VEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQALFICLLLPFLSKLWGIPFSQLPIYLRDGAACFLNLGTL********
Disordered Region (DISOPRED)
*****S************************************************************************************************EFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVA*************IFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQALFICLLLPFLSKLWGIPFSQLPIYLRDGAACFLNLGTLSSGKLQFI
Disordered Region (DISEMBL)
****************************PVSCYLRDHHANQRLPTTLLFRSSKRNYYHNNSNYKNNNVIYIVASAA*********AAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQALFICLLLPFLSKLWGIPFSQLPIYLRDGAACFLNLGTLSSGKLQFI
Disordered Region (DISPRO)
*****SRL**GSAASHSLLQSPKPSPKAPVSCYLRDHHANQRLPTTLLFRSSKRNYYHNNSNYKNNNVIYIVASA*************************TVEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQALFICLLLPFLSKLWGIPFSQLPIYLRDGAACFLNLGTLSSGKLQFI
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTSCYSRLTAGSAASHSLLQSPKPSPKAPVSCYLRDHHANQRLPTTLLFRSSKRNYYHNNSNYKNNNVIYIVASAAAAERSDGHEAAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQALFICLLLPFLSKLWGIPFSQLPIYLRDGAACFLNLGTLSSGKLQFI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	364	2.2.26 [Sep-21-2011]
Q9GSB0	473	Crt homolog 1 OS=Dictyost	yes	no	0.653	0.503	0.278	1e-16
Q55C66	478	Crt homolog 3 OS=Dictyost	no	no	0.631	0.481	0.282	3e-16
Q550A6	484	Crt homolog 2 OS=Dictyost	no	no	0.667	0.502	0.261	2e-14
Q9GSD8	425	Putative chloroquine resi	N/A	no	0.664	0.569	0.230	6e-06
Q7REK3	424	Putative chloroquine resi	N/A	no	0.684	0.587	0.223	0.0001
Q7Z0V9	424	Putative chloroquine resi	N/A	no	0.689	0.591	0.210	0.0004
Q9GSD3	424	Putative chloroquine resi	N/A	no	0.653	0.561	0.217	0.0006

>sp|Q9GSB0|CRTP1_DICDI Crt homolog 1 OS=Dictyostelium discoideum GN=crtp1 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 118/248 (47%), Gaps = 10/248 (4%)

Query: 113 RRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSIL-YLRYHA 171
             + I+I   + V  GV N VL K  +    +Y FFL+QL  FGYV ++ ++  Y  +  
Sbjct: 48  ETITILIYVVLYVTSGVINSVLLKKVMNKFTNYAFFLSQLTNFGYVPIFGAVTAYKIFFT 107

Query: 172 GIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFL 231
             +  E    P   F  +G L+A+     +  G   SG    +L+Q  + + ++ S IFL
Sbjct: 108 KDIPQETRDFPTRKFAIMGALDAITGFFVVIGGVSTSGPLQQLLNQAIIPFTMIASFIFL 167

Query: 232 GRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEV 291
             RY + QL G  LV IG ++T    S  G S  G   FW+   ++S +  A   V K++
Sbjct: 168 KERYSLIQLGGA-LVIIGGVVTSLIPSLLGGSSGGNKPFWNFFYLLSVIPGALSNVYKDI 226

Query: 292 IFLDAAQRLKGGVDLFVVNSYGSAFQALFICLLLP---FLSKLWGIPFSQLPIYLRDGAA 348
            F   A      +D++ +  + S +Q++F   L P   +L     + F Q+  ++++GA 
Sbjct: 227 GFQAVAD-----MDVWYLQYWDSLYQSIFGLFLFPVNNWLPPPATVKFEQILPFMKEGAE 281

Query: 349 CFLNLGTL 356
           C   + ++
Sbjct: 282 CLAGINSI 289

May regulate endogenous transporter.
Dictyostelium discoideum (taxid: 44689)

>sp|Q55C66|CRTP3_DICDI Crt homolog 3 OS=Dictyostelium discoideum GN=crtp3 PE=3 SV=1

 Score = 86.3 bits (212), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 124/241 (51%), Gaps = 11/241 (4%)

Query: 113 RRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYF-SILYLRYHA 171
             + I+I   + ++ GV N VL K  ++   +Y FFL+Q+  +GY+ ++  ++ Y  Y  
Sbjct: 51  ETLPILIYVLLYIISGVINVVLLKKLMIKFVNYGFFLSQITNYGYLPIFLVAMWYKMYCT 110

Query: 172 GIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFL 231
             V  E  + P+  FV +GLL+A+     +  G   SG    +L+Q  + + ++ S IFL
Sbjct: 111 SDVPKETRNFPQYKFVIMGLLDAINGFFVVIGGVSTSGPLQQLLNQAIIPFTMIASFIFL 170

Query: 232 GRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEV 291
             RY + QL G  ++  GVI+++   S  G S  G  +F++   ++S +  A   V K++
Sbjct: 171 RERYSLFQLGGAAVILGGVIVSLIP-SLVGGSSGGNILFYNFFYLISVIPGALSNVYKDI 229

Query: 292 IFLDAAQRLKGGVDLFVVNSYGSAFQALFICLLLP---FLSKLWGIPFSQLPIYLRDGAA 348
            F    Q +   +D++ +  +   +Q+LF  +L P   +L     I F+++   +RDGA 
Sbjct: 230 AF----QSID--MDVWYLQFWDCLYQSLFGSILFPVNNWLPPPATIKFTEIIPSMRDGAL 283

Query: 349 C 349
           C
Sbjct: 284 C 284

May regulate endogenous transporter.

Dictyostelium discoideum (taxid: 44689)

>sp|Q550A6|CRTP2_DICDI Crt homolog 2 OS=Dictyostelium discoideum GN=crtp2 PE=3 SV=1

 Score = 80.5 bits (197), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 125/256 (48%), Gaps = 13/256 (5%)

Query: 105 NVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSI 164
           N ISK   +   +++   + +L GV N +L K  +    +Y FFL QL  +GYV ++ +I
Sbjct: 51  NSISK---QTATVLVYVVLYILSGVINSLLLKKVMNVFTNYGFFLNQLTNYGYVPIFGAI 107

Query: 165 -LYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQ 223
            LY       +  +  S P+  FV +G L+A+     +  G   +G    +L+Q+ + + 
Sbjct: 108 VLYKILFTNDIPKDTRSFPQWKFVIMGALDAVTGYFVVIGGIKTTGPLQQLLNQSVIPFT 167

Query: 224 ILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQA 283
           +LLS IFL  RY + QL G  ++  GV++++      G++  G  +F++   ++S +  A
Sbjct: 168 MLLSFIFLKERYSLIQLGGALIIIGGVVVSLIPSLTGGNT-SGNMLFYNFFYLISMIPYA 226

Query: 284 ADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQALFICLLLP---FLSKLWGIPFSQLP 340
              V K + F          +D++ +  + + +Q+L   +L P   +L     + F+Q+ 
Sbjct: 227 FSNVYKAIGFSTVED-----MDVWYLQYFDALYQSLVGTVLFPINNWLPPPSDMKFNQVI 281

Query: 341 IYLRDGAACFLNLGTL 356
             L+ G  C   + TL
Sbjct: 282 PQLKAGGKCLGGINTL 297

May regulate endogenous transporter.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9GSD8|CRT_PLABE Putative chloroquine resistance transporter OS=Plasmodium berghei GN=CG10 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 113/269 (42%), Gaps = 27/269 (10%)

Query: 95  RKSGERTVE--FNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQL 152
             SG   V+  F +I       V + + + + + + V N+V  K  L  + +Y F  ++ 
Sbjct: 35  NNSGRSCVKRFFKIIGNEMKNNVYVYLLSILYLCVCVMNKVFAKRTLNKMGNYSFVTSET 94

Query: 153 ATFGYVAVYFSILYLRYH----AGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILS 208
                + V F +LY  Y     + +  +E        F  + LL+A      M      +
Sbjct: 95  HNIICIIV-FQLLYFIYRKTSSSSVYKNESQKNFGWQFFLISLLDASTVIISMIGLTRTT 153

Query: 209 GASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCF--LVGIGVIITVASGSNPGHSLKG 266
           G     + Q  +   +    +FLG RY +    G F  L+ I V+ T  S    G +   
Sbjct: 154 GNIQSFIMQLIIPVNMYFWFMFLGYRYHLFNYLGAFIILITIAVVETFLSFETQGEN--- 210

Query: 267 AGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQALFICLL-- 324
             I ++L+MI +F   +   + +EV+F       K  +++  +N+    FQ  F  LL  
Sbjct: 211 -SIIFNLIMISAFNTLSFSNMTREVVF------KKHKINILRLNAMVVLFQ-FFTSLLVL 262

Query: 325 ----LPFLSKLWGIPFSQLPIYLRDGAAC 349
               +PFL +++ +PFS++   + +G  C
Sbjct: 263 PVYNIPFLKEIY-MPFSEMSTNINNGLRC 290

May regulate endogenous transporter.

Plasmodium berghei (taxid: 5821)

>sp|Q7REK3|CRT_PLAYO Putative chloroquine resistance transporter OS=Plasmodium yoelii yoelii GN=PY05061 PE=3 SV=1

 Score = 48.1 bits (113), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 117/282 (41%), Gaps = 33/282 (11%)

Query: 81  SDGHEAAVGDLVDKRKSGERTVE--FNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLA 138
           ++G E  +GD      SG   ++  F +I       V +   + + + + V N+V  K  
Sbjct: 28  TNGSE--IGD-----NSGRSCIKRFFKIIGNEMKNNVYVYFLSILYLCVCVMNKVFAKRT 80

Query: 139 LVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVT---DEMLSMPKAPFVAVGLLEAL 195
           L  + +Y F  ++      + V F +LY  Y     +   +E        F  + LL+A 
Sbjct: 81  LNKMGNYSFVTSETHNIICIVV-FQLLYFIYRKTSTSGYKNESQKNFGWQFFLISLLDAS 139

Query: 196 AAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCF--LVGIGVIIT 253
                M      +G     + Q  +   +    +FLG RY +    G F  L+ I V+ T
Sbjct: 140 TVIISMIGLTRTTGNIQSFIMQLIIPVNMYFCFMFLGYRYHLFNYLGAFIILITIAVVET 199

Query: 254 VASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYG 313
             S      +     I ++L+MI + +  +   + +EV+F       K  +++  +N+  
Sbjct: 200 FLSFETQSEN----SIIFNLIMISALIPLSFSNMTREVVF------KKHKINILRLNAMV 249

Query: 314 SAFQALFICLL------LPFLSKLWGIPFSQLPIYLRDGAAC 349
             FQ  F  LL      +PFL +++ +PFS++   + +G  C
Sbjct: 250 VLFQ-FFTSLLVLPVYNIPFLKEIY-MPFSEMSTNINNGLRC 289

May regulate endogenous transporter.

Plasmodium yoelii yoelii (taxid: 73239)

>sp|Q7Z0V9|CRT_PLACH Putative chloroquine resistance transporter OS=Plasmodium chabaudi GN=CG10 PE=3 SV=1

 Score = 46.2 bits (108), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 58/276 (21%), Positives = 116/276 (42%), Gaps = 25/276 (9%)

Query: 84  HEAAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLK 143
           +++ +G+  + R  G + +   +I       + + + + + + + V N+V  K  L  + 
Sbjct: 29  NDSEIGN--NSRWGGAKRI-CKLIGNEMRNNIYVYLLSILYLCVSVMNKVFSKRTLNKIG 85

Query: 144 HYPFFLAQLATFGYVAVYFSILYLRYHAG---IVTDEMLSMPKAPFVAVGLLEALAAATG 200
           +Y F  +++       + F +LY  Y         +E        F  + LL+A      
Sbjct: 86  NYSFVTSEVHNM-ICTIVFQLLYFIYRKTSNPASRNESQKNFGWQFFLISLLDASTVIIT 144

Query: 201 MAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCF--LVGIGVIITVASGS 258
           M      +G     + Q  +   +    IFLG RY +    G F  L+ I  + TV S  
Sbjct: 145 MIGLTRTTGNIQSFIMQLIIPVNMYFCFIFLGYRYHLFNYLGAFIILITIAAVETVLSYE 204

Query: 259 NPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQA 318
               +     I ++L+MI + +  +   + +EV+F       K  +++  +N+  + FQ 
Sbjct: 205 TQSDN----SIIFNLIMIFALIPLSFSNMTREVVF------KKHKINIIRLNAMVALFQF 254

Query: 319 LFICLLLP-----FLSKLWGIPFSQLPIYLRDGAAC 349
               L+LP     FL +++ +PFS++   + DG  C
Sbjct: 255 FTSLLVLPVYNISFLKEIY-MPFSEMGTNINDGLRC 289

May regulate endogenous transporter.

Plasmodium chabaudi (taxid: 5825)

>sp|Q9GSD3|CRT_PLAVS Putative chloroquine resistance transporter OS=Plasmodium vivax (strain Salvador I) GN=CG10 PE=3 SV=1

 Score = 45.8 bits (107), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 107/253 (42%), Gaps = 15/253 (5%)

Query: 111 NDRRVEIVIAAAVTVLLGVG--NRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLR 168
           N+ R  I I   + V L V   N++L K  L  + +Y F  ++      + V+F++ ++ 
Sbjct: 52  NEIRENISIYLLIIVYLCVCVMNKLLAKRTLKKIGNYSFVTSETHNCICMVVFFALYFMF 111

Query: 169 YHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSI 228
               +   E        F+ + LL+A +           +G     + Q  +   +    
Sbjct: 112 GRRVMSAKERHRNFGVQFLLISLLDACSVIIAFIGLTRTTGNIQSFVMQLSIPINMFFCF 171

Query: 229 IFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVL 288
           + L  RY +    G F+  I V I V        + +   I ++L++I S +  +   + 
Sbjct: 172 LILRYRYHLFNYVGAFI--IVVTIAVVEFMLSFETQEENSIVFNLVLIASLIPLSFSNMT 229

Query: 289 KEVIFLDAAQRLKGGVDLFVVNSYGSAFQALFICLLLPFLS----KLWGIPFSQLPIYLR 344
           +E++F       K  +++  +N+  S FQ    CL+LP  +    K   +PFS++   ++
Sbjct: 230 REIVF------KKYKINILRLNAVVSFFQIFTSCLMLPMYTLPFLKQINLPFSEIGTNIK 283

Query: 345 DGAAC-FLNLGTL 356
           +G  C FL   T+
Sbjct: 284 NGFRCLFLGQNTI 296

May regulate endogenous transporter.

Plasmodium vivax (strain Salvador I) (taxid: 126793)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	364
359479254	453	PREDICTED: crt homolog 1-like [Vitis vin	0.686	0.551	0.856	1e-110
449444865	459	PREDICTED: crt homolog 2-like [Cucumis s	0.956	0.758	0.637	1e-109
224103963	451	predicted protein [Populus trichocarpa]	0.947	0.764	0.646	1e-108
296083866	344	unnamed protein product [Vitis vinifera]	0.673	0.712	0.861	1e-107
356519872	426	PREDICTED: crt homolog 1-like [Glycine m	0.771	0.659	0.741	1e-105
356553645	438	PREDICTED: crt homolog 1-like [Glycine m	0.771	0.641	0.752	1e-104
356577341	428	PREDICTED: crt homolog 1-like [Glycine m	0.782	0.665	0.750	1e-102
357505093	432	hypothetical protein MTR_7g054190 [Medic	0.785	0.662	0.737	1e-102
125529164	531	hypothetical protein OsI_05253 [Oryza sa	0.640	0.438	0.803	1e-100
357493893	432	Crt-like protein [Medicago truncatula] g	0.686	0.578	0.792	2e-98

>gi|359479254|ref|XP_002276436.2| PREDICTED: crt homolog 1-like [Vitis vinifera]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/251 (85%), Positives = 232/251 (92%), Gaps = 1/251 (0%)

Query: 110 SNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRY 169
             DRR+++VIAAA TV+LGVGNRVLYKLALVPLKHYPFFLAQLAT GYV VYFSIL LRY
Sbjct: 105 EGDRRMKVVIAAAFTVVLGVGNRVLYKLALVPLKHYPFFLAQLATVGYVLVYFSILSLRY 164

Query: 170 HAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSII 229
           +AGIVTDEMLS+PK P+VAVGLLEAL AATGMAAGAILSGASIPILSQ+FLVWQ+LLS I
Sbjct: 165 NAGIVTDEMLSLPKTPYVAVGLLEALGAATGMAAGAILSGASIPILSQSFLVWQLLLSAI 224

Query: 230 FLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLK 289
           FLGRRY+VNQL GCFLV IGVIITVASGS+ G SLKGAGIFWSLLM+VSFL QAADTVLK
Sbjct: 225 FLGRRYKVNQLLGCFLVAIGVIITVASGSSAGASLKGAGIFWSLLMMVSFLFQAADTVLK 284

Query: 290 EVIFLDAAQRLKGG-VDLFVVNSYGSAFQALFICLLLPFLSKLWGIPFSQLPIYLRDGAA 348
           E IFL AA+RLKGG VDLFVVNSYGSAFQALFICLLLPFLSKLWG+PFS LP YL+DGAA
Sbjct: 285 ERIFLKAAERLKGGSVDLFVVNSYGSAFQALFICLLLPFLSKLWGVPFSHLPNYLKDGAA 344

Query: 349 CFLNLGTLSSG 359
           CFLN+G+LSSG
Sbjct: 345 CFLNIGSLSSG 355

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444865|ref|XP_004140194.1| PREDICTED: crt homolog 2-like [Cucumis sativus] gi|449480984|ref|XP_004156047.1| PREDICTED: crt homolog 2-like [Cucumis sativus]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 234/367 (63%), Positives = 273/367 (74%), Gaps = 19/367 (5%)

Query: 1   MTSCYSRLTAGSAA---SHSLLQSPKPSPKAPVSCYLRDHHANQRLPTTLLFRSSKRNYY 57
           MTS   R +AG+A+      L Q P+  P+  VS Y  D   +      ++ R+ K    
Sbjct: 1   MTSWSHRFSAGTASFGGPFRLRQRPRSLPE--VSIYRNDDLRSGC--GCVILRAPK---- 52

Query: 58  HNNSNYKNNNVIYIVASAAAAERSDGHEAAVGDL----VDKRKSGE--RTVEFNVISKSN 111
           H        +  + ++ +   +R      AVGD     + + KSGE    +    + +S 
Sbjct: 53  HRRLEAVAPSGAWDLSDSGEEDRVKPCSYAVGDQRVEDLAEGKSGEILENIRAEKLRRS- 111

Query: 112 DRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHA 171
           DR+VEIV+AAA TV+ GV NRVLYKLALVPLKHYPFFLAQLATFGYV VYFSILYLRYHA
Sbjct: 112 DRKVEIVVAAASTVIFGVANRVLYKLALVPLKHYPFFLAQLATFGYVIVYFSILYLRYHA 171

Query: 172 GIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFL 231
           GIVTDEMLS PKAP++  GLLEAL AATGMAA AILSGASIP+LSQTFLVWQILLS IFL
Sbjct: 172 GIVTDEMLSTPKAPYIVAGLLEALGAATGMAAAAILSGASIPVLSQTFLVWQILLSTIFL 231

Query: 232 GRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEV 291
           GRRY+ +QLFGCF V IGVIITVASGSN G+SLK AGIFWSLLMI+SFL QAADTVLKE+
Sbjct: 232 GRRYKTSQLFGCFFVTIGVIITVASGSNAGNSLKEAGIFWSLLMIISFLFQAADTVLKEI 291

Query: 292 IFLDAAQRLKG-GVDLFVVNSYGSAFQALFICLLLPFLSKLWGIPFSQLPIYLRDGAACF 350
           IFLDA+++LKG  +DLFVVNS+GSAFQA+FI  LLPFLSKLWGIPF+QLP YLRDGAACF
Sbjct: 292 IFLDASRQLKGRTIDLFVVNSFGSAFQAVFILALLPFLSKLWGIPFTQLPSYLRDGAACF 351

Query: 351 LNLGTLS 357
           LN G+LS
Sbjct: 352 LNYGSLS 358

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103963|ref|XP_002313263.1| predicted protein [Populus trichocarpa] gi|222849671|gb|EEE87218.1| predicted protein [Populus trichocarpa]

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 245/379 (64%), Positives = 282/379 (74%), Gaps = 34/379 (8%)

Query: 1   MTSCYSRLTAGSAASHSLLQSPKPSPKAPVSCYLRDHHANQRLPTTLLFRSSKRNYYHNN 60
           MTSC+ RLT G        QS + S    +S  L+    NQ+    +L RSS R Y  + 
Sbjct: 1   MTSCFRRLTTGPTPPSGPAQSRQRSTADILSLPLKRISINQQ--PGILLRSS-RQYSRS- 56

Query: 61  SNYKNNNVIYIVASAAAAERSDGHEAA---------VGDLV--DKRKSGERTVEFN---V 106
                    +I+ +    +RS G   A         VGD       +S +RTVE N    
Sbjct: 57  ---------FIIEAVEPGDRSGGGNEAEKAGPCACLVGDQTVGGVVESIDRTVEINGKRT 107

Query: 107 ISKSN-----DRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVY 161
           IS S+     DR VE+ +AAAVTV+LGVGNRVLYKLAL+PLKHYPFFLAQLATFGYV VY
Sbjct: 108 ISGSDSRSKEDRAVEVAVAAAVTVVLGVGNRVLYKLALLPLKHYPFFLAQLATFGYVIVY 167

Query: 162 FSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLV 221
           F+IL++R+ AGIVTDEMLSMPKAP++ VGLLEAL AATGMAAGAILSGASIPILSQTFLV
Sbjct: 168 FTILHIRHRAGIVTDEMLSMPKAPYILVGLLEALGAATGMAAGAILSGASIPILSQTFLV 227

Query: 222 WQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLL 281
           WQILLS IFLGRRY+VNQL GCFLV +GVIITVASG + G SL+ AGIFWSLLM+ SF L
Sbjct: 228 WQILLSTIFLGRRYKVNQLLGCFLVAVGVIITVASGPSAG-SLREAGIFWSLLMMFSFFL 286

Query: 282 QAADTVLKEVIFLDAAQRLKGG-VDLFVVNSYGSAFQALFICLLLPFLSKLWGIPFSQLP 340
           QAADTVLKEVIF DAA++LKGG VDLFV+NSYGSAFQALF+CLLLPF+SKLWGIPFSQLP
Sbjct: 287 QAADTVLKEVIFSDAAKQLKGGSVDLFVINSYGSAFQALFVCLLLPFMSKLWGIPFSQLP 346

Query: 341 IYLRDGAACFLNLGTLSSG 359
            YL+DGA CFLN+G+LSSG
Sbjct: 347 NYLKDGAVCFLNIGSLSSG 365

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083866|emb|CBI24254.3| unnamed protein product [Vitis vinifera]

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/246 (86%), Positives = 229/246 (93%), Gaps = 1/246 (0%)

Query: 115 VEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIV 174
           +++VIAAA TV+LGVGNRVLYKLALVPLKHYPFFLAQLAT GYV VYFSIL LRY+AGIV
Sbjct: 1   MKVVIAAAFTVVLGVGNRVLYKLALVPLKHYPFFLAQLATVGYVLVYFSILSLRYNAGIV 60

Query: 175 TDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRR 234
           TDEMLS+PK P+VAVGLLEAL AATGMAAGAILSGASIPILSQ+FLVWQ+LLS IFLGRR
Sbjct: 61  TDEMLSLPKTPYVAVGLLEALGAATGMAAGAILSGASIPILSQSFLVWQLLLSAIFLGRR 120

Query: 235 YRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFL 294
           Y+VNQL GCFLV IGVIITVASGS+ G SLKGAGIFWSLLM+VSFL QAADTVLKE IFL
Sbjct: 121 YKVNQLLGCFLVAIGVIITVASGSSAGASLKGAGIFWSLLMMVSFLFQAADTVLKERIFL 180

Query: 295 DAAQRLKGG-VDLFVVNSYGSAFQALFICLLLPFLSKLWGIPFSQLPIYLRDGAACFLNL 353
            AA+RLKGG VDLFVVNSYGSAFQALFICLLLPFLSKLWG+PFS LP YL+DGAACFLN+
Sbjct: 181 KAAERLKGGSVDLFVVNSYGSAFQALFICLLLPFLSKLWGVPFSHLPNYLKDGAACFLNI 240

Query: 354 GTLSSG 359
           G+LSSG
Sbjct: 241 GSLSSG 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519872|ref|XP_003528593.1| PREDICTED: crt homolog 1-like [Glycine max]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/286 (74%), Positives = 234/286 (81%), Gaps = 5/286 (1%)

Query: 73  ASAAAAERSDGHEAAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGNR 132
           A    A    G +  V      R  G    E     +S +R  E+++AAAVTV++G GNR
Sbjct: 49  AKCGGAWERSGEKKVVAP--RPRSVGRFAAESG--RESGNRLAEVMLAAAVTVVMGAGNR 104

Query: 133 VLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLL 192
           VLYKLALVPL++YPFFLAQLATFGYV VYFSILY+RY AGIVTDEMLS+PK PF+ VGLL
Sbjct: 105 VLYKLALVPLRNYPFFLAQLATFGYVIVYFSILYIRYRAGIVTDEMLSVPKTPFLVVGLL 164

Query: 193 EALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVII 252
           EAL AATGMAAGA+LSGASIPILSQ FLVWQILLS  FLGRRY+VNQL GC LV IGVI+
Sbjct: 165 EALGAATGMAAGAMLSGASIPILSQAFLVWQILLSYFFLGRRYKVNQLVGCSLVAIGVIL 224

Query: 253 TVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGG-VDLFVVNS 311
           TV SGS  GHSLK AGIFWSLLMIVSFL QAADTVLKEVIFLDA Q+LKGG +D+FVVNS
Sbjct: 225 TVVSGSGAGHSLKEAGIFWSLLMIVSFLFQAADTVLKEVIFLDATQKLKGGSLDMFVVNS 284

Query: 312 YGSAFQALFICLLLPFLSKLWGIPFSQLPIYLRDGAACFLNLGTLS 357
           +GSAFQALFICLLLPFLSKLWGIPF QLP YL+DGAACFLN+GTLS
Sbjct: 285 FGSAFQALFICLLLPFLSKLWGIPFGQLPNYLKDGAACFLNVGTLS 330

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553645|ref|XP_003545164.1| PREDICTED: crt homolog 1-like [Glycine max]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 216/287 (75%), Positives = 243/287 (84%), Gaps = 6/287 (2%)

Query: 78  AERSDGHEAAVGDL---VDKRKSGERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVL 134
           ++   G E  VG     V+ R+  E     + +  S +R VE+  AA  TV+LGVGNRVL
Sbjct: 55  SDDVGGREEKVGPCSYAVEDRRVAEDGGS-DAVVGSRNRVVEVAAAAVATVVLGVGNRVL 113

Query: 135 YKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEA 194
           YKLALVPLKHYPFFLAQLATFGYV VYF+ILY+R+HAGIVTDEML  PKAPF+ VGLLEA
Sbjct: 114 YKLALVPLKHYPFFLAQLATFGYVIVYFAILYIRHHAGIVTDEMLDAPKAPFIVVGLLEA 173

Query: 195 LAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITV 254
           LAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRY+VNQL GCFLV IGV++TV
Sbjct: 174 LAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYKVNQLLGCFLVTIGVVVTV 233

Query: 255 ASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGG--VDLFVVNSY 312
           ASG+  G+ LK  G+FWSLLMIVSF LQAADTVLKE+IFLD++++LKGG  +DLFVVNSY
Sbjct: 234 ASGAGAGNLLKEGGMFWSLLMIVSFFLQAADTVLKEIIFLDSSRKLKGGCCMDLFVVNSY 293

Query: 313 GSAFQALFICLLLPFLSKLWGIPFSQLPIYLRDGAACFLNLGTLSSG 359
           GSAFQALF+CLLLPFLSKLWGIPFSQLP YL+DGAACFLN GTLSSG
Sbjct: 294 GSAFQALFVCLLLPFLSKLWGIPFSQLPNYLKDGAACFLNFGTLSSG 340

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577341|ref|XP_003556785.1| PREDICTED: crt homolog 1-like [Glycine max]

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 217/289 (75%), Positives = 241/289 (83%), Gaps = 4/289 (1%)

Query: 72  VASAAAAERSDGHEAAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGN 131
           V    A +RS   +AAV      R      +      +S +R  E+V+AAAVTV++G GN
Sbjct: 49  VKCGGAWKRSGEKKAAVAA---PRPCAVGRLAAESGRESGNRSAEVVLAAAVTVVMGAGN 105

Query: 132 RVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGL 191
           RVLYKLALVPLK+YPFFLAQLATFGYV VYFSILY+RY AGIVTDEMLS+PK PF+ VGL
Sbjct: 106 RVLYKLALVPLKNYPFFLAQLATFGYVIVYFSILYIRYRAGIVTDEMLSVPKTPFLVVGL 165

Query: 192 LEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVI 251
           LEAL AATGMAAGA+LSGASIPILSQ FLVWQILLS IFLGRRY+VNQL GCFLV IGVI
Sbjct: 166 LEALGAATGMAAGAMLSGASIPILSQAFLVWQILLSYIFLGRRYKVNQLVGCFLVAIGVI 225

Query: 252 ITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGG-VDLFVVN 310
           +TVASGS  GHSLK AGIFWSLLMIVSFL QAADTVLKEVIFLDA ++LKGG +D+FVVN
Sbjct: 226 LTVASGSGAGHSLKEAGIFWSLLMIVSFLFQAADTVLKEVIFLDATRKLKGGSLDMFVVN 285

Query: 311 SYGSAFQALFICLLLPFLSKLWGIPFSQLPIYLRDGAACFLNLGTLSSG 359
           S+GSAFQALFICLLLPFLSKLWG+PF QLP YL+DGAACFLN+GTLS G
Sbjct: 286 SFGSAFQALFICLLLPFLSKLWGVPFGQLPNYLKDGAACFLNVGTLSRG 334

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357505093|ref|XP_003622835.1| hypothetical protein MTR_7g054190 [Medicago truncatula] gi|355497850|gb|AES79053.1| hypothetical protein MTR_7g054190 [Medicago truncatula]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 219/297 (73%), Positives = 245/297 (82%), Gaps = 11/297 (3%)

Query: 64  KNNNVIYIVASAAAAERSDGHEAAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIAAAV 123
           +    I +V ++ A ERSD  E       D++K   R VE N   KS ++ V++V+AAA 
Sbjct: 49  RRRTWIPVVEASGARERSDVSEE------DEKK---RIVEDNC-RKSENQTVKVVVAAAA 98

Query: 124 TVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPK 183
             + GVGNRVLYKLALVPLK YPFFLAQ +TF YV VYFSILY+RY AGIVTDEML++PK
Sbjct: 99  VGVFGVGNRVLYKLALVPLKQYPFFLAQFSTFVYVIVYFSILYIRYRAGIVTDEMLAVPK 158

Query: 184 APFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGC 243
            PF+ VGLLEAL AATGMAAGA+LSGASIPILSQTFLVWQILLS IFLGRRY+VNQL GC
Sbjct: 159 TPFLIVGLLEALGAATGMAAGAMLSGASIPILSQTFLVWQILLSTIFLGRRYKVNQLLGC 218

Query: 244 FLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGG 303
           FLV IGVIITVASGS  G SL+ AGIFWSLLM+VSFL QAADTVLKEVIF DA Q+LKGG
Sbjct: 219 FLVAIGVIITVASGSGAGKSLQEAGIFWSLLMMVSFLFQAADTVLKEVIFSDATQKLKGG 278

Query: 304 -VDLFVVNSYGSAFQALFICLLLPFLSKLWGIPFSQLPIYLRDGAACFLNLGTLSSG 359
            +DLFVVNS+GSAFQALFICLLLPFLSKLWGIPFSQLP YL+DGAACFLN+G LSSG
Sbjct: 279 SLDLFVVNSFGSAFQALFICLLLPFLSKLWGIPFSQLPNYLKDGAACFLNIGKLSSG 335

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125529164|gb|EAY77278.1| hypothetical protein OsI_05253 [Oryza sativa Indica Group]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/234 (80%), Positives = 215/234 (91%), Gaps = 1/234 (0%)

Query: 127 LGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPF 186
           +G GNRVLYKLALVPL+ YPFFLAQLATFGYV VYFSILYLR+ AGIVTDEMLS+P+ PF
Sbjct: 107 MGTGNRVLYKLALVPLRDYPFFLAQLATFGYVVVYFSILYLRHQAGIVTDEMLSLPQKPF 166

Query: 187 VAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLV 246
           +AVGLLEAL+AA+GMAAGA+LSGASIPILSQT+LVWQ+LLS IFL RRYR+N++ GCFLV
Sbjct: 167 LAVGLLEALSAASGMAAGAVLSGASIPILSQTYLVWQLLLSAIFLKRRYRINEITGCFLV 226

Query: 247 GIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGG-VD 305
            +GVIITVASGS+ G SLKG GI W LLMI+SF LQAADTVLKE+IFL+AA++LKGG VD
Sbjct: 227 TVGVIITVASGSSAGASLKGTGILWPLLMIISFFLQAADTVLKEIIFLNAAKKLKGGSVD 286

Query: 306 LFVVNSYGSAFQALFICLLLPFLSKLWGIPFSQLPIYLRDGAACFLNLGTLSSG 359
           LFVVNSYGSA+QALF+CLLLPFLSKLWG+PF QLP Y+RDG ACFLN+G+LSSG
Sbjct: 287 LFVVNSYGSAYQALFMCLLLPFLSKLWGVPFHQLPTYIRDGTACFLNMGSLSSG 340

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493893|ref|XP_003617235.1| Crt-like protein [Medicago truncatula] gi|355518570|gb|AET00194.1| Crt-like protein [Medicago truncatula]

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 203/256 (79%), Positives = 228/256 (89%), Gaps = 6/256 (2%)

Query: 105 NVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSI 164
           +V  +S ++  E+ +AAA TV++GVGNRVLYKLALVPLK YPFFLAQ     YV VYF I
Sbjct: 84  DVAGRSGNKAAEVAVAAAATVVMGVGNRVLYKLALVPLKQYPFFLAQ-----YVIVYFGI 138

Query: 165 LYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQI 224
           +Y+R+ AGIVTDEMLS+PK PFV +GLLEALAAATGMAAGAILSGASIPILSQTFLVWQI
Sbjct: 139 MYIRHRAGIVTDEMLSLPKTPFVVIGLLEALAAATGMAAGAILSGASIPILSQTFLVWQI 198

Query: 225 LLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAA 284
           LLSIIFLGRRY+VN L GCFLV IGV++TVASG + G+SLK  G+FWSLLMIVSFLLQAA
Sbjct: 199 LLSIIFLGRRYKVNHLLGCFLVTIGVVVTVASGPDAGNSLKDGGLFWSLLMIVSFLLQAA 258

Query: 285 DTVLKEVIFLDAAQRLKGG-VDLFVVNSYGSAFQALFICLLLPFLSKLWGIPFSQLPIYL 343
           DTVLKE+IFLDA ++LKGG VDLFVVNSYGSAFQALFICLLLPFLSKLWG+PFSQLP YL
Sbjct: 259 DTVLKELIFLDANKKLKGGSVDLFVVNSYGSAFQALFICLLLPFLSKLWGVPFSQLPNYL 318

Query: 344 RDGAACFLNLGTLSSG 359
           +DGAACFLN+GTLSSG
Sbjct: 319 KDGAACFLNVGTLSSG 334

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	364
TAIR|locus:2150250	507	CLT1 "CRT (chloroquine-resista	0.557	0.400	0.661	4.4e-86
TAIR|locus:2177008	452	CLT3 "CRT (chloroquine-resista	0.958	0.772	0.519	3.8e-85
TAIR|locus:2136032	431	CLT2 "CRT (chloroquine-resista	0.708	0.598	0.505	2e-65
DICTYBASE|DDB_G0276943	473	crtp1 "chloroquine resistance	0.667	0.513	0.257	4.3e-15
DICTYBASE|DDB_G0270204	478	crtp3 "chloroquine resistance	0.667	0.508	0.258	5.5e-14
DICTYBASE|DDB_G0277321	484	crtp2 "chloroquine resistance	0.667	0.502	0.246	1.5e-12

TAIR|locus:2150250 CLT1 "CRT (chloroquine-resistance transporter)-like transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 686 (246.5 bits), Expect = 4.4e-86, Sum P(2) = 4.4e-86
 Identities = 135/204 (66%), Positives = 153/204 (75%)

Query:   157 YVAVYFSILYLRYHAGIVTDEMLSMPKAPFVXXXXXXXXXXXXXXXXXXILSGASIPILS 216
             YVAVYFSILY RY AGIVT EMLS+PK PF+                   LSG S  +LS
Sbjct:   205 YVAVYFSILYFRYRAGIVTKEMLSVPKLPFLIVGVLESLALAAGMAAASNLSGPSTTVLS 264

Query:   217 QTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMI 276
             QTFLVWQIL SIIFLGRRYR+NQ+ GC LV  GVI++VASGS   HS K  GI WSLLM+
Sbjct:   265 QTFLVWQILFSIIFLGRRYRINQILGCTLVAFGVIVSVASGSGAAHSFKDTGILWSLLMV 324

Query:   277 VSFLLQAADTVLKEVIFLDAAQRLKGG-VDLFVVNSYGSAFQALFICLLLPFLSKLWGIP 335
              SFLLQ ADTV+KEVIFLD+ +RLKG  +DLFVVNSYGS FQ + I LLLPFLSKLWGIP
Sbjct:   325 FSFLLQGADTVMKEVIFLDSKKRLKGASLDLFVVNSYGSIFQVICIALLLPFLSKLWGIP 384

Query:   336 FSQLPIYLRDGAACFLNLGTLSSG 359
             F+QLP Y+RDG ACFLN+G+  +G
Sbjct:   385 FNQLPSYIRDGGACFLNIGSRITG 408

GO:0009507 "chloroplast" evidence=ISM

GO:0002229 "defense response to oomycetes" evidence=IGI

GO:0009536 "plastid" evidence=IDA

GO:0034635 "glutathione transport" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IMP

TAIR|locus:2177008 CLT3 "CRT (chloroquine-resistance transporter)-like transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 852 (305.0 bits), Expect = 3.8e-85, P = 3.8e-85
 Identities = 187/360 (51%), Positives = 232/360 (64%)

Query:     1 MTSCYSRLTAGSAASHSLLQSPKPSPKAPVSCYLRDHHANQRLPTTLLFXXXXXXXXXXX 60
             M +   R T G  AS + ++S   +    +S  +R +H + RLP  L+            
Sbjct:     1 MATTSRRFTTGLFASITSVKSHSANRPQSISL-IRRNHIDHRLP--LIVPSSRRWIIQAA 57

Query:    61 XXXXXXXVIYIVASAAAAERSDGHEAAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIA 120
                      +   + A  ++   +  A+GD  +   S   TV  +VI   + +  EIVI 
Sbjct:    58 RSWDG----FDDGAEAEIKKPGAYGYAIGDN-EIEGSSSSTV--HVIDGEHVKTAEIVIW 110

Query:   121 AAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLS 180
             AAVT   GVGNRV+YKLALVPLK YPFFLAQL+TFGYVAVY++ILY RY AG VTD MLS
Sbjct:   111 AAVTAAFGVGNRVMYKLALVPLKEYPFFLAQLSTFGYVAVYYTILYFRYRAGTVTDAMLS 170

Query:   181 MPKAPFVXXXXXXXXXXXXXXXXXXILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQL 240
             +PK+PF+                   LSG S  +LSQTFLVWQI  SIIFLGRRY VNQ+
Sbjct:   171 VPKSPFLIVGILEALAAAAGMAAAANLSGPSTTVLSQTFLVWQIFFSIIFLGRRYSVNQI 230

Query:   241 FGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRL 300
              GC LV +GVI++VASGS   HSL  AG+ W LLM++SFLLQ A TVLKEVIF+D+ +RL
Sbjct:   231 LGCTLVALGVIVSVASGSGAAHSLNEAGVLWILLMVLSFLLQGAGTVLKEVIFIDSQRRL 290

Query:   301 KGG-VDLFVVNSYGSAFQALFICLLLPFLSKLWGIPFSQLPIYLRDGAACFLNLGTLSSG 359
             KG  +DLF+VNSYGSAFQA+ I LLLPFLSKLWGIPF+QL  YL+DGA CFLN GT++ G
Sbjct:   291 KGASLDLFIVNSYGSAFQAICIALLLPFLSKLWGIPFNQLGTYLKDGAVCFLNNGTITKG 350

GO:0009507 "chloroplast" evidence=ISM

GO:0002229 "defense response to oomycetes" evidence=IGI

GO:0009536 "plastid" evidence=IDA

GO:0034635 "glutathione transport" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IMP

TAIR|locus:2136032 CLT2 "CRT (chloroquine-resistance transporter)-like transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
 Identities = 133/263 (50%), Positives = 173/263 (65%)

Query:    98 GERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGY 157
             G  T E ++ S  N     IV  + V V L V NRVLYKLALVP+K YPFF+AQL TFGY
Sbjct:    79 GASTEESSIPSNRN----LIVANSVVIVALAVANRVLYKLALVPMKQYPFFMAQLTTFGY 134

Query:   158 VAVYFSILYLRYHAGIVTDEMLSMPKAPFVXXXXXXXXXXXXXXXXXXILSGASIPILSQ 217
             V +YF+ILY R   GIVT+EM+ +PK  F                   +L G  IPIL+Q
Sbjct:   135 VLIYFTILYTRRRLGIVTNEMMDVPKWRFAIIGFLEALGVATGMAAAAMLPGPVIPILNQ 194

Query:   218 TFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIV 277
             T+LVWQ+L +++ LGRR+ +NQ+ GC LV +GV++ V+SGS    +L G G  W  +++ 
Sbjct:   195 TYLVWQLLFALLILGRRFLLNQIAGCLLVAVGVVVAVSSGSGADTTLSGIGFLWPAVLVA 254

Query:   278 SFLLQAADTVLKEVIFLDAAQRLKG-GVDLFVVNSYGSAFQALFICLLLPFLSKLWGIPF 336
             S   QA  +++KE +F DAA+RL+G  +D+FVVNS+GS FQALF+ LLLPFLS L GIPF
Sbjct:   255 SAAFQAGASIIKEFVFNDAAKRLEGKSLDIFVVNSFGSGFQALFVFLLLPFLSNLKGIPF 314

Query:   337 SQLPIYLRDGAACFLNLGTLSSG 359
             + LP YL+DGA CF N G   SG
Sbjct:   315 ASLPSYLKDGAGCFFNTGAKISG 337

GO:0009507 "chloroplast" evidence=IDA

GO:0002229 "defense response to oomycetes" evidence=IGI

GO:0009536 "plastid" evidence=IDA

GO:0034635 "glutathione transport" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IMP

DICTYBASE|DDB_G0276943 crtp1 "chloroquine resistance transporter-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 213 (80.0 bits), Expect = 4.3e-15, P = 4.3e-15
 Identities = 66/256 (25%), Positives = 114/256 (44%)

Query:   105 NVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSI 164
             N +SK     + I+I   + V  GV N VL K  +    +Y FFL+QL  FGYV ++ ++
Sbjct:    43 NSMSKET---ITILIYVVLYVTSGVINSVLLKKVMNKFTNYAFFLSQLTNFGYVPIFGAV 99

Query:   165 L-YLRYHAGIVTDEMLSMPKAPFVXXXXXXXXXXXXXXXXXXILSGASIPILSQTFLVWQ 223
               Y  +    +  E    P   F                     SG    +L+Q  + + 
Sbjct:   100 TAYKIFFTKDIPQETRDFPTRKFAIMGALDAITGFFVVIGGVSTSGPLQQLLNQAIIPFT 159

Query:   224 ILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQA 283
             ++ S IFL  RY + QL G  ++ IG ++T    S  G S  G   FW+   ++S +  A
Sbjct:   160 MIASFIFLKERYSLIQLGGALVI-IGGVVTSLIPSLLGGSSGGNKPFWNFFYLLSVIPGA 218

Query:   284 ADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQALFICLLLP---FLSKLWGIPFSQLP 340
                V K++ F   A      +D++ +  + S +Q++F   L P   +L     + F Q+ 
Sbjct:   219 LSNVYKDIGFQAVAD-----MDVWYLQYWDSLYQSIFGLFLFPVNNWLPPPATVKFEQIL 273

Query:   341 IYLRDGAACFLNLGTL 356
              ++++GA C   + ++
Sbjct:   274 PFMKEGAECLAGINSI 289

GO:0012506 "vesicle membrane" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0270204 crtp3 "chloroquine resistance transporter-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 204 (76.9 bits), Expect = 5.5e-14, P = 5.5e-14
 Identities = 66/255 (25%), Positives = 121/255 (47%)

Query:   107 ISKSNDRR-VEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYF-SI 164
             + KS  +  + I+I   + ++ GV N VL K  ++   +Y FFL+Q+  +GY+ ++  ++
Sbjct:    44 LKKSMTKETLPILIYVLLYIISGVINVVLLKKLMIKFVNYGFFLSQITNYGYLPIFLVAM 103

Query:   165 LYLRYHAGIVTDEMLSMPKAPFVXXXXXXXXXXXXXXXXXXILSGASIPILSQTFLVWQI 224
              Y  Y    V  E  + P+  FV                    SG    +L+Q  + + +
Sbjct:   104 WYKMYCTSDVPKETRNFPQYKFVIMGLLDAINGFFVVIGGVSTSGPLQQLLNQAIIPFTM 163

Query:   225 LLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAA 284
             + S IFL  RY + QL G  ++  GVI+++   S  G S  G  +F++   ++S +  A 
Sbjct:   164 IASFIFLRERYSLFQLGGAAVILGGVIVSLIP-SLVGGSSGGNILFYNFFYLISVIPGAL 222

Query:   285 DTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQALFICLLLP---FLSKLWGIPFSQLPI 341
               V K++ F    Q +   +D++ +  +   +Q+LF  +L P   +L     I F+++  
Sbjct:   223 SNVYKDIAF----QSID--MDVWYLQFWDCLYQSLFGSILFPVNNWLPPPATIKFTEIIP 276

Query:   342 YLRDGAACFLNLGTL 356
              +RDGA C     T+
Sbjct:   277 SMRDGALCLGGKNTI 291

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0277321 crtp2 "chloroquine resistance transporter-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 192 (72.6 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 63/256 (24%), Positives = 116/256 (45%)

Query:   105 NVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSI 164
             N ISK       +++   + +L GV N +L K  +    +Y FFL QL  +GYV ++ +I
Sbjct:    51 NSISKQT---ATVLVYVVLYILSGVINSLLLKKVMNVFTNYGFFLNQLTNYGYVPIFGAI 107

Query:   165 -LYLRYHAGIVTDEMLSMPKAPFVXXXXXXXXXXXXXXXXXXILSGASIPILSQTFLVWQ 223
              LY       +  +  S P+  FV                    +G    +L+Q+ + + 
Sbjct:   108 VLYKILFTNDIPKDTRSFPQWKFVIMGALDAVTGYFVVIGGIKTTGPLQQLLNQSVIPFT 167

Query:   224 ILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQA 283
             +LLS IFL  RY + QL G  ++  GV++++      G++  G  +F++   ++S +  A
Sbjct:   168 MLLSFIFLKERYSLIQLGGALIIIGGVVVSLIPSLTGGNT-SGNMLFYNFFYLISMIPYA 226

Query:   284 ADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQALFICLLLP---FLSKLWGIPFSQLP 340
                V K + F          +D++ +  + + +Q+L   +L P   +L     + F+Q+ 
Sbjct:   227 FSNVYKAIGFSTVED-----MDVWYLQYFDALYQSLVGTVLFPINNWLPPPSDMKFNQVI 281

Query:   341 IYLRDGAACFLNLGTL 356
               L+ G  C   + TL
Sbjct:   282 PQLKAGGKCLGGINTL 297


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.141   0.418    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      364       328   0.00088  116 3  11 22  0.44    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  194 KB (2109 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.32u 0.09s 23.41t   Elapsed:  00:00:01
  Total cpu time:  23.32u 0.09s 23.41t   Elapsed:  00:00:01
  Start:  Fri May 10 03:38:12 2013   End:  Fri May 10 03:38:13 2013

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	364
pfam08627	130	pfam08627, CRT-like, CRT-like	4e-05

>gnl|CDD|117200 pfam08627, CRT-like, CRT-like

 Score = 42.6 bits (100), Expect = 4e-05
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 105 NVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSI 164
           N +SK     + I+I   + ++ GV N VL K  +    +Y FFL+QL  +GYV ++ + 
Sbjct: 49  NSMSKET---LTILIYVVLYIISGVINSVLLKKVMNKFTNYGFFLSQLTNYGYVPIFGAA 105

Query: 165 -LYLRYHAGIVTDEMLSMPKAPFV 187
             Y  Y    +  E  + P+  FV
Sbjct: 106 MWYKIYFTSDIPKETRNFPQYKFV 129

This region is found in proteins related to Plasmodium falciparum chloroquine resistance transporter (CRT). Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	364
KOG3912	372	consensus Predicted integral membrane protein [Gen	99.97
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.95
KOG2766	336	consensus Predicted membrane protein [Function unk	99.85
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.69
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.69
PF08627	130	CRT-like: CRT-like; InterPro: IPR013936 This regio	99.62
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.45
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.42
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	99.19
PLN00411	358	nodulin MtN21 family protein; Provisional	99.13
PRK11272	292	putative DMT superfamily transporter inner membran	99.09
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.05
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.96
PRK11689	295	aromatic amino acid exporter; Provisional	98.93
PRK15430	296	putative chloramphenical resistance permease RarD;	98.77
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	98.75
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	98.72
KOG1581	327	consensus UDP-galactose transporter related protei	98.69
KOG2765	416	consensus Predicted membrane protein [Function unk	98.66
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.62
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.58
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.53
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.39
KOG4510	346	consensus Permease of the drug/metabolite transpor	98.29
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.28
COG2510	140	Predicted membrane protein [Function unknown]	98.27
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	98.02
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	97.87
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	97.65
KOG1580	337	consensus UDP-galactose transporter related protei	97.38
KOG1443	349	consensus Predicted integral membrane protein [Fun	97.36
KOG1582	367	consensus UDP-galactose transporter related protei	97.33
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.12
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	97.1
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	97.1
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	96.99
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	96.9
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	96.83
PLN00411	358	nodulin MtN21 family protein; Provisional	96.75
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	96.67
PRK10532	293	threonine and homoserine efflux system; Provisiona	96.65
PRK11689	295	aromatic amino acid exporter; Provisional	96.55
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	96.45
PRK11272	292	putative DMT superfamily transporter inner membran	96.11
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	95.91
COG0697	292	RhaT Permeases of the drug/metabolite transporter	95.87
KOG2922	335	consensus Uncharacterized conserved protein [Funct	95.6
PRK15430	296	putative chloramphenical resistance permease RarD;	95.54
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	95.26
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	95.06
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	94.97
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	94.97
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	94.85
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	94.76
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	94.65
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	93.93
PRK09541	110	emrE multidrug efflux protein; Reviewed	90.78
PRK10650	109	multidrug efflux system protein MdtI; Provisional	90.7
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	89.91
PRK11431	105	multidrug efflux system protein; Provisional	88.15
COG2076	106	EmrE Membrane transporters of cations and cationic	88.01
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	87.7
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	87.09
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	86.55
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	85.27
PF12398	42	DUF3660: Receptor serine/threonine kinase ; InterP	84.77
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	84.24
KOG1580	337	consensus UDP-galactose transporter related protei	83.52
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	83.08
COG2962	293	RarD Predicted permeases [General function predict	80.71
PRK13499	345	rhamnose-proton symporter; Provisional	80.39

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=99.97  E-value=1.3e-30  Score=248.16  Aligned_cols=218  Identities=19%  Similarity=0.229  Sum_probs=177.6

Q ss_pred             HHHHHHHHhhhhHHHHHHHHhC------CCCChHHHHHHHHHhHHHHHHHHHHHHHHh---cCCcc-------hhhhcCC
Q 017885          119 IAAAVTVLLGVGNRVLYKLALV------PLKHYPFFLAQLATFGYVAVYFSILYLRYH---AGIVT-------DEMLSMP  182 (364)
Q Consensus       119 il~v~lvi~G~~N~V~~Kl~~~------~~~~yp~fl~q~~t~~yi~v~f~il~~r~~---~~~i~-------~e~~~~p  182 (364)
                      ++.+.|+++|+.|++..||+++      +.++||+.++..|++|-...+....++|.+   .+...       ++.-.++
T Consensus         6 ~ls~imvvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~   85 (372)
T KOG3912|consen    6 FLSLIMVVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFN   85 (372)
T ss_pred             hhhhhhhhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCC
Confidence            4678899999999999999976      458999999988776642212111223322   22211       1222355


Q ss_pred             CcceehhhHHHHHHHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeecCCCC--
Q 017885          183 KAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNP--  260 (364)
Q Consensus       183 ~~~f~i~GllD~~a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~s~~--  260 (364)
                      +..|+.|++||.+++.++++|+.+|+++++||+|+++|+|+.++|..||+++.+..||+|.+.+.+|+++++..|-..  
T Consensus        86 p~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~  165 (372)
T KOG3912|consen   86 PVLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVT  165 (372)
T ss_pred             cceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeeccccc
Confidence            566888999999999999999999999999999999999999999999999999999999999999999999985321  


Q ss_pred             -CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHH-HHhhhccccccCCCCCC
Q 017885          261 -GHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQALFI-CLLLPFLSKLWGIPFSQ  338 (364)
Q Consensus       261 -~~s~~~~~ll~~lL~ils~i~~Ais~V~eE~~fk~~~~~lk~~ld~~~v~~w~~~fq~l~~-~lllP~~~~~~g~~f~~  338 (364)
                       .-.+.++.+.|++++++|+++.|+|+|+|||.++.+      ++||...+||++.|++.+. ++..|+++.+.|.+|+-
T Consensus       166 ~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~------nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~  239 (372)
T KOG3912|consen  166 DPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKS------NVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSC  239 (372)
T ss_pred             CCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhc------cCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcC
Confidence             112346778899999999999999999999988754      7999999999999995554 77789999999988988


Q ss_pred             chHH
Q 017885          339 LPIY  342 (364)
Q Consensus       339 lp~~  342 (364)
                      .|+.
T Consensus       240 ~~~g  243 (372)
T KOG3912|consen  240 NPRG  243 (372)
T ss_pred             CCCc
Confidence            8877

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.95  E-value=6e-27  Score=231.18  Aligned_cols=189  Identities=23%  Similarity=0.220  Sum_probs=155.8

Q ss_pred             hhHHHHHHHHhCCCCChHHHHHHHHHhHHHHHHHHHHHHHHhcCCcchhhhcCCCcceehhhHHHHHHHHHHHHHhhhcc
Q 017885          129 VGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILS  208 (364)
Q Consensus       129 ~~N~V~~Kl~~~~~~~yp~fl~q~~t~~yi~v~f~il~~r~~~~~i~~e~~~~p~~~f~i~GllD~~a~~L~~ia~~yts  208 (364)
                      +.|+....+... -.+.|.+++.+.-+....+|.+++.+|+..++.. +....++|+|+++|++|+.+|++.+.|++||+
T Consensus        27 ~t~~~s~~l~~~-~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~-~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTs  104 (334)
T PF06027_consen   27 GTGTFSSLLANK-GVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWL-KVLKRPWWKYFLLALLDVEANYLVVLAYQYTS  104 (334)
T ss_pred             hHHHHHHHHHhc-CccCcHHHHHHHHHHHHHHHhhhhhhccccccch-hhcchhHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            344444555555 7889999996655555556666666665443322 23456779999999999999999999999999


Q ss_pred             ccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeecCCCCCC--CCCCcchHHHHHHHHHHHHHHHHH
Q 017885          209 GASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGH--SLKGAGIFWSLLMIVSFLLQAADT  286 (364)
Q Consensus       209 ~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~s~~~~--s~~~~~ll~~lL~ils~i~~Ais~  286 (364)
                      .++.|+|+|++|||++++|++|||+||++.|++|+++|++|+++++.+|..+++  ..+++.+.|++++++|+++||++|
T Consensus       105 vtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~n  184 (334)
T PF06027_consen  105 VTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVSN  184 (334)
T ss_pred             HhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998754332  346789999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHhhhc
Q 017885          287 VLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQALFICLLLPF  327 (364)
Q Consensus       287 V~eE~~fk~~~~~lk~~ld~~~v~~w~~~fq~l~~~lllP~  327 (364)
                      |+||+.+|        +.|...+.++.++|++++..+.+.+
T Consensus       185 V~~E~~v~--------~~~~~~~lg~~Glfg~ii~~iq~~i  217 (334)
T PF06027_consen  185 VLEEKLVK--------KAPRVEFLGMLGLFGFIISGIQLAI  217 (334)
T ss_pred             HHHHHhcc--------cCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999887        3677888999999999887665443

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.85  E-value=7.1e-23  Score=193.35  Aligned_cols=181  Identities=19%  Similarity=0.174  Sum_probs=149.6

Q ss_pred             hhHHHHHHHHhCCCCChHHHHHHHHHhHHHHHHHHHHHHHHhcCCcchhhhcCCCcceehhhHHHHHHHHHHHHHhhhcc
Q 017885          129 VGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILS  208 (364)
Q Consensus       129 ~~N~V~~Kl~~~~~~~yp~fl~q~~t~~yi~v~f~il~~r~~~~~i~~e~~~~p~~~f~i~GllD~~a~~L~~ia~~yts  208 (364)
                      ++|....-.+..+--|-|-+++.+.-.....+|.+++.+|+  +     .....|+||++.|+.|+.+|++.+.|++||+
T Consensus        31 t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~--~-----~~~~~~~hYilla~~DVEaNy~vV~AyQyTs  103 (336)
T KOG2766|consen   31 TSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRR--K-----YIKAKWRHYILLAFVDVEANYFVVKAYQYTS  103 (336)
T ss_pred             HcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhh--H-----HHHHHHHHhhheeEEeecccEEEeeehhhcc
Confidence            34444555555666777877774333333335666666654  1     2233457899999999999999999999999


Q ss_pred             ccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeecCCCCCC-CCCCcchHHHHHHHHHHHHHHHHHH
Q 017885          209 GASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGH-SLKGAGIFWSLLMIVSFLLQAADTV  287 (364)
Q Consensus       209 ~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~s~~~~-s~~~~~ll~~lL~ils~i~~Ais~V  287 (364)
                      -.+.++|+++.||..+++||+|||.||++.|+.|+++|++|+++++.+|-.+++ +.++|++.|+.++++|+.+||+|||
T Consensus       104 mtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSNv  183 (336)
T KOG2766|consen  104 MTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSNV  183 (336)
T ss_pred             hHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeeccc
Confidence            999999999999999999999999999999999999999999999999855444 4578999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHh
Q 017885          288 LKEVIFLDAAQRLKGGVDLFVVNSYGSAFQALFICLL  324 (364)
Q Consensus       288 ~eE~~fk~~~~~lk~~ld~~~v~~w~~~fq~l~~~ll  324 (364)
                      .||++.|        +.|...+.+..++|+.++..+-
T Consensus       184 ~EEflvk--------n~d~~elm~~lgLfGaIIsaIQ  212 (336)
T KOG2766|consen  184 SEEFLVK--------NADRVELMGFLGLFGAIISAIQ  212 (336)
T ss_pred             cHHHHHh--------cCcHHHHHHHHHHHHHHHHHHH
Confidence            9999888        6899999999999999888775

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.69  E-value=6.2e-16  Score=150.04  Aligned_cols=189  Identities=23%  Similarity=0.295  Sum_probs=145.1

Q ss_pred             hhhHHHHHHHH-hCCCCC-hHHHHHHHHHhHHHHHHHHHHHHHHhcCCcchhhhcCCCcceehhhHHHHHHHHHHHHHhh
Q 017885          128 GVGNRVLYKLA-LVPLKH-YPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGA  205 (364)
Q Consensus       128 G~~N~V~~Kl~-~~~~~~-yp~fl~q~~t~~yi~v~f~il~~r~~~~~i~~e~~~~p~~~f~i~GllD~~a~~L~~ia~~  205 (364)
                      -..|-++.+.. ..+.++ ||.+++.++...+..+.+.......     .++..+.|.+++++++++|..+..+.+.++.
T Consensus        12 ~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~   86 (303)
T PF08449_consen   12 CCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFK-----FPKSRKIPLKKYAILSFLFFLASVLSNAALK   86 (303)
T ss_pred             HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc-----ccCCCcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555444 444444 8999998887665554433222211     1223445668899999999999999999999


Q ss_pred             hccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeecCCCCCCC---CCCcchHHHHHHHHHHHHH
Q 017885          206 ILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHS---LKGAGIFWSLLMIVSFLLQ  282 (364)
Q Consensus       206 yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~s~~~~s---~~~~~ll~~lL~ils~i~~  282 (364)
                      |+|.+.+++++.+.++++|+++++++||||+..||++++++++|+++...++..+.+.   ...+...|.++++++.+++
T Consensus        87 ~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~  166 (303)
T PF08449_consen   87 YISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLD  166 (303)
T ss_pred             hCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999876433221   2233445999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHhhhc
Q 017885          283 AADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQALFICLLLPF  327 (364)
Q Consensus       283 Ais~V~eE~~fk~~~~~lk~~ld~~~v~~w~~~fq~l~~~lllP~  327 (364)
                      |++.++||+.+++|      +.++..+..+...++.++.++..+.
T Consensus       167 a~~~~~qe~~~~~~------~~~~~~~mfy~n~~~~~~~~~~~~~  205 (303)
T PF08449_consen  167 AFTGVYQEKLFKKY------GKSPWELMFYTNLFSLPFLLILLFL  205 (303)
T ss_pred             HHHHHHHHHHHHHh------CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999976      5777777777777777666554433

; GO: 0055085 transmembrane transport

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.69  E-value=9.3e-17  Score=152.63  Aligned_cols=138  Identities=24%  Similarity=0.302  Sum_probs=120.7

Q ss_pred             cceehhhHHHHHHHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeecCCCCC--
Q 017885          184 APFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPG--  261 (364)
Q Consensus       184 ~~f~i~GllD~~a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~s~~~--  261 (364)
                      +++++|+++|++.|.+.++++.+++++.+|+++|+-|++|+++++++||||++..||+++++.++|++++..++....  
T Consensus        18 ~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~   97 (244)
T PF04142_consen   18 LKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDN   97 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcccccc
Confidence            779999999999999999999999999999999999999999999999999999999999999999999998643221  


Q ss_pred             -C--C-----CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHhhhc
Q 017885          262 -H--S-----LKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQALFICLLLPF  327 (364)
Q Consensus       262 -~--s-----~~~~~ll~~lL~ils~i~~Ais~V~eE~~fk~~~~~lk~~ld~~~v~~w~~~fq~l~~~lllP~  327 (364)
                       +  .     ...+.+.|.+++++++++.|++.||+||++|+.      +.+.+.-|.+-.+++.++.++...+
T Consensus        98 ~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~------~~s~~~~N~qL~~~gi~~~~~~~~~  165 (244)
T PF04142_consen   98 SSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRS------NVSLWIQNMQLYLFGILFNLLALLL  165 (244)
T ss_pred             ccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhccc------chhHHHHHHHHHHHHHHHHHHHHhc
Confidence             1  0     124567889999999999999999999998854      4888888999999998887766544

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PF08627 CRT-like: CRT-like; InterPro: IPR013936 This region is found in proteins related to Plasmodium falciparum chloroquine resistance transporter (CRT)

Probab=99.62  E-value=4.8e-16  Score=132.52  Aligned_cols=79  Identities=42%  Similarity=0.760  Sum_probs=74.5

Q ss_pred             cccchhHHHHHHHHHHHhhhhHHHHHHHHhCCCCChHHHHHHHHHhHHHHHHHHHHHH-HHhcCCcchhhhcCCCcceeh
Q 017885          110 SNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYL-RYHAGIVTDEMLSMPKAPFVA  188 (364)
Q Consensus       110 ~~~~~~~v~il~v~lvi~G~~N~V~~Kl~~~~~~~yp~fl~q~~t~~yi~v~f~il~~-r~~~~~i~~e~~~~p~~~f~i  188 (364)
                      -.++++++++++++|++.|++|+|++|++..++.|||||++|+++++|+++||+++++ +++++.+|+||+.+|+|||++
T Consensus        51 ~~ke~~~L~v~~vv~V~s~v~N~VL~K~~~~~m~NY~fFL~QlTt~gyvpIffaV~lyk~y~t~~It~Emr~FPkyKFaI  130 (130)
T PF08627_consen   51 YSKENFKLLVYVVVYVVSGVINRVLYKKMTNPMKNYPFFLNQLTTFGYVPIFFAVVLYKMYFTGDITKEMRAFPKYKFAI  130 (130)
T ss_pred             hhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHhcccceehHHHHHHHHHHHHcCCCCHHHHhCccccccC
Confidence            4478999999999999999999999999999999999999999999999999998865 688999999999999999985

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.45  E-value=2.6e-12  Score=127.76  Aligned_cols=203  Identities=14%  Similarity=0.103  Sum_probs=147.6

Q ss_pred             cccchhHHHHHHHHHHHhhhhHHHHHHHHhCCCCChHHHHHHHHHh-HHHHHHHHHHHHHHhc-CCcchhhhcCCCccee
Q 017885          110 SNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATF-GYVAVYFSILYLRYHA-GIVTDEMLSMPKAPFV  187 (364)
Q Consensus       110 ~~~~~~~v~il~v~lvi~G~~N~V~~Kl~~~~~~~yp~fl~q~~t~-~yi~v~f~il~~r~~~-~~i~~e~~~~p~~~f~  187 (364)
                      .+..++++.+++++--.+...-.+..|+..+. .+||++++.++.+ +.+... .....++++ .+++.  .+...++++
T Consensus        43 ~~~~~~~~~~~~~~wy~~s~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~-~~~~~~~~~~~~~~~--~~~~~~~ll  118 (350)
T PTZ00343         43 FPNFKWKLALLFLTWYALNVLYVVDNKLALNM-LPLPWTISSLQLFVGWLFAL-LYWATGFRKIPRIKS--LKLFLKNFL  118 (350)
T ss_pred             cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHH-HHHHhCCCCCCCCCC--HHHHHHHHH
Confidence            44578999888888888888888899999876 5799999998854 333211 111111111 11110  011124578


Q ss_pred             hhhHHHHHHHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeecCCCCCCCCCCc
Q 017885          188 AVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGA  267 (364)
Q Consensus       188 i~GllD~~a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~s~~~~s~~~~  267 (364)
                      .+|+|-.......+.+..+++.+..+++....++|+++++++|+|+|+++.+++|++++++|+++....+.       +.
T Consensus       119 p~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~-------~~  191 (350)
T PTZ00343        119 PQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKEL-------HF  191 (350)
T ss_pred             HHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccc-------hh
Confidence            89999988888888999999999999999999999999999999999999999999999999999774221       23


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHh
Q 017885          268 GIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQALFICLL  324 (364)
Q Consensus       268 ~ll~~lL~ils~i~~Ais~V~eE~~fk~~~~~lk~~ld~~~v~~w~~~fq~l~~~ll  324 (364)
                      .+.|.++.++|.+..|+.+++-++..+++. ..+.++++..+-.+...+++++.+++
T Consensus       192 ~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~lp~  247 (350)
T PTZ00343        192 TWLAFWCAMLSNLGSSLRSIFAKKTMKNKS-EIGENLTASNIYMLLTLIASLISLPL  247 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cccccCCHHHHHHHHHHHHHHHHHHH
Confidence            477999999999999999999999776431 01113666545444566665554443

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.42  E-value=3.6e-12  Score=123.01  Aligned_cols=186  Identities=12%  Similarity=0.117  Sum_probs=139.3

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHhCCCCChHHHHHHHHHh-HHHHHHHHHHHHHH---hcCCcchhhhcCCCcceehhhHH
Q 017885          117 IVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATF-GYVAVYFSILYLRY---HAGIVTDEMLSMPKAPFVAVGLL  192 (364)
Q Consensus       117 v~il~v~lvi~G~~N~V~~Kl~~~~~~~yp~fl~q~~t~-~yi~v~f~il~~r~---~~~~i~~e~~~~p~~~f~i~Gll  192 (364)
                      ...+++..-++...-+++.|+..+. +++|.+++..+.. +.+..+   +..+.   ++.+.+++    ..++++++|++
T Consensus         3 ~~~~~~~w~~~~~~~~~~NK~~l~~-~~~P~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~g~~   74 (302)
T TIGR00817         3 TGLLFGLWYFLNVYFNIYNKKLLNV-FPYPYFKTLISLAVGSLYCL---LSWSSGLPKRLKISSA----LLKLLLPVAIV   74 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-CChhHHHHHHHHHHHHHHHH---HHHHhCCCCCCCCCHH----HHHHHHHHHHH
Confidence            3445666666677777888998875 7899999987743 333222   11111   11111111    12457888999


Q ss_pred             HHHHHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeecCCCCCCCCCCcchHHH
Q 017885          193 EALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWS  272 (364)
Q Consensus       193 D~~a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~s~~~~s~~~~~ll~~  272 (364)
                      -+....+.+.++.|++.+..+++..+.++|+++++++|+|+|++..+++|++++++|+++....+       .+....|+
T Consensus        75 ~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~-------~~~~~~G~  147 (302)
T TIGR00817        75 HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTE-------LSFNWAGF  147 (302)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCc-------ccccHHHH
Confidence            88999999999999999999999999999999999999999999999999999999998753211       13346799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHH
Q 017885          273 LLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQALFICL  323 (364)
Q Consensus       273 lL~ils~i~~Ais~V~eE~~fk~~~~~lk~~ld~~~v~~w~~~fq~l~~~l  323 (364)
                      ++.++|.+..|+.+++.++..++      +++|+..+..|...++.+..++
T Consensus       148 ~~~l~a~~~~a~~~v~~k~~~~~------~~~~~~~~~~~~~~~~~~~l~p  192 (302)
T TIGR00817       148 LSAMISNITFVSRNIFSKKAMTI------KSLDKTNLYAYISIMSLFLLSP  192 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcc------CCCCcccHHHHHHHHHHHHHHH
Confidence            99999999999999999985442      1488888888888777655433

specificities overlap.

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=99.19  E-value=3.3e-10  Score=112.01  Aligned_cols=136  Identities=20%  Similarity=0.183  Sum_probs=116.7

Q ss_pred             cceehhhHHHHHHHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeecC---CCC
Q 017885          184 APFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASG---SNP  260 (364)
Q Consensus       184 ~~f~i~GllD~~a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~---s~~  260 (364)
                      .|..+|+++-++.|.+.++++.+.++..+|+..|.-|..|++++.++|+||.+..||...++-++|+.++-.+.   .++
T Consensus        93 lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a  172 (345)
T KOG2234|consen   93 LKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGA  172 (345)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCc
Confidence            68899999999999999999999999999999999999999999999999999999999999999999998432   221


Q ss_pred             C-CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHhh
Q 017885          261 G-HSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQALFICLLL  325 (364)
Q Consensus       261 ~-~s~~~~~ll~~lL~ils~i~~Ais~V~eE~~fk~~~~~lk~~ld~~~v~~w~~~fq~l~~~lll  325 (364)
                      . .....|.+.|....+.+|...+.+.||=|+++|+.      +.+.+.-|---.+|+.++.++..
T Consensus       173 ~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s------~~s~wi~NiqL~~~g~~f~~l~~  232 (345)
T KOG2234|consen  173 KSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGS------NVSLWIRNIQLYFFGILFNLLTI  232 (345)
T ss_pred             cCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcC------CchHHHHHHHHHHHHHHHHHHHH
Confidence            1 23457889999999999999999999999998853      57777777766777776665543

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.13  E-value=1.1e-09  Score=109.81  Aligned_cols=196  Identities=17%  Similarity=0.199  Sum_probs=129.2

Q ss_pred             chhHHHHHHHHHHHhhhhHHHHHHHHhCC-CCChHHHHHHHHHhHHHHHHHHHHHHHHhcCCcch-hhhcCCCcceehhh
Q 017885          113 RRVEIVIAAAVTVLLGVGNRVLYKLALVP-LKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTD-EMLSMPKAPFVAVG  190 (364)
Q Consensus       113 ~~~~v~il~v~lvi~G~~N~V~~Kl~~~~-~~~yp~fl~q~~t~~yi~v~f~il~~r~~~~~i~~-e~~~~p~~~f~i~G  190 (364)
                      |..+..+.++++=+.-....++.|.+.+. +.+.+  +..+++..-..+.+++.+.+.+....++ +.++  ..+++++|
T Consensus        10 ~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~--~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~--~~~l~l~g   85 (358)
T PLN00411         10 REAVFLTAMLATETSVVGISTLFKVATSKGLNIYP--FLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSI--LSKIGLLG   85 (358)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccH--HHHHHHHHHHHHHHHHHHHHHHhcccCcchHHH--HHHHHHHH
Confidence            34555555666666666777788887643 44433  5555643322222333333322111111 1111  13467778


Q ss_pred             HHHHHHHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHH------hcCcccccccchhhheeeeeeEEeecCCCC----
Q 017885          191 LLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIF------LGRRYRVNQLFGCFLVGIGVIITVASGSNP----  260 (364)
Q Consensus       191 llD~~a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iF------LkrRy~~~q~lGv~ivliGvivv~~s~s~~----  260 (364)
                      ++-.....+.+.|++||+++...++..+.+.|+++++++|      +|+|.+..+++|++++++|+.++...+...    
T Consensus        86 ~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~  165 (358)
T PLN00411         86 FLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVA  165 (358)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccc
Confidence            7775566688899999999999999999999999999999      699999999999999999998866432100    


Q ss_pred             --------------CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHH
Q 017885          261 --------------GHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQAL  319 (364)
Q Consensus       261 --------------~~s~~~~~ll~~lL~ils~i~~Ais~V~eE~~fk~~~~~lk~~ld~~~v~~w~~~fq~l  319 (364)
                                    .....++.++++++.++|+++.|+.+++.++..++|       .++.....|...+..+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~-------~~~~~~t~~~~~~~~~  231 (358)
T PLN00411        166 SSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEY-------PAAFTVSFLYTVCVSI  231 (358)
T ss_pred             cccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CcHhHHHHHHHHHHHH
Confidence                          001112236688999999999999999999876643       3444556666555433

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.09  E-value=3.2e-09  Score=102.47  Aligned_cols=166  Identities=13%  Similarity=0.150  Sum_probs=122.2

Q ss_pred             cchhHHHHHHHHHHHhhhhHHHHHHHHhCCCCChHHHHHHHHHhHHHHHHHHHHHHHHhcCCcchhhhcCCCcceehhhH
Q 017885          112 DRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGL  191 (364)
Q Consensus       112 ~~~~~v~il~v~lvi~G~~N~V~~Kl~~~~~~~yp~fl~q~~t~~yi~v~f~il~~r~~~~~i~~e~~~~p~~~f~i~Gl  191 (364)
                      |.-++++.+++.+.++|+.|.++.|...+.+.+  +.+..++.+.-..+.+++...+  +++.++ .++  +.++++.|.
T Consensus         4 ~~~~~~~~~~~~~~~iWg~~~~~~K~~~~~~~p--~~~~~~R~~~a~l~ll~~~~~~--~~~~~~-~~~--~~~~~~~g~   76 (292)
T PRK11272          4 RQLLPLFGALFALYIIWGSTYLVIRIGVESWPP--LMMAGVRFLIAGILLLAFLLLR--GHPLPT-LRQ--WLNAALIGL   76 (292)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCH--HHHHHHHHHHHHHHHHHHHHHh--CCCCCc-HHH--HHHHHHHHH
Confidence            345778888999999999999999998886655  6677777544333333333222  211111 111  133566776


Q ss_pred             HH-HHHHHHHHHHh-hhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeecCCCCCCCCCCcch
Q 017885          192 LE-ALAAATGMAAG-AILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGI  269 (364)
Q Consensus       192 lD-~~a~~L~~ia~-~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~s~~~~s~~~~~l  269 (364)
                      +- +....+.+.+. .+++.+...++....++++++++.+ +|+|+++.+++|+++.++|++++...+..      +...
T Consensus        77 ~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~------~~~~  149 (292)
T PRK11272         77 LLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNL------SGNP  149 (292)
T ss_pred             HHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCccc------ccch
Confidence            64 45667778888 7999999999999999999999985 69999999999999999999886533211      2335


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 017885          270 FWSLLMIVSFLLQAADTVLKEV  291 (364)
Q Consensus       270 l~~lL~ils~i~~Ais~V~eE~  291 (364)
                      .|+++.++|.+++|+.+++.++
T Consensus       150 ~G~l~~l~a~~~~a~~~~~~~~  171 (292)
T PRK11272        150 WGAILILIASASWAFGSVWSSR  171 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            7899999999999999999887

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.05  E-value=3e-09  Score=99.42  Aligned_cols=172  Identities=17%  Similarity=0.063  Sum_probs=121.0

Q ss_pred             hhhHHHHHHHHhCCCCChHHHHHHHHHhHHHHHHHHHHHHHHhcCCcchhhhcCCCcceehhhH-HHHHHHHHHHHHhhh
Q 017885          128 GVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGL-LEALAAATGMAAGAI  206 (364)
Q Consensus       128 G~~N~V~~Kl~~~~~~~yp~fl~q~~t~~yi~v~f~il~~r~~~~~i~~e~~~~p~~~f~i~Gl-lD~~a~~L~~ia~~y  206 (364)
                      |+.+.+..|...+...+ |+.....+.+.-..+... +. +.+   .+++.    .+++++.|. +-.+...+.+.|..|
T Consensus         1 Wg~~~~~~k~~~~~~~~-~~~~~~~r~~~~~l~l~~-~~-~~~---~~~~~----~~~~~~~~~~~~~l~~~~~~~a~~~   70 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVP-LYFAVFRRLIFALLLLLP-LL-RRR---PPLKR----LLRLLLLGALQIGVFYVLYFVAVKR   70 (260)
T ss_pred             CcchHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHH-HH-Hhc---cCHhH----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            56788999998776433 344443333322222211 11 111   11111    134566664 467777888999999


Q ss_pred             ccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeecCCCCCCCCCCcchHHHHHHHHHHHHHHHHH
Q 017885          207 LSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADT  286 (364)
Q Consensus       207 ts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~s~~~~s~~~~~ll~~lL~ils~i~~Ais~  286 (364)
                      ++.+...++.+..+.++++++.+|+|+|.++.|++|++++++|++++..++.      .+....+.++.++|.+..|+.+
T Consensus        71 ~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~------~~~~~~G~~~~l~a~~~~a~~~  144 (260)
T TIGR00950        71 LPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGN------LSINPAGLLLGLGSGISFALGT  144 (260)
T ss_pred             cChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCc------ccccHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999765431      1344678999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHH
Q 017885          287 VLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQALFI  321 (364)
Q Consensus       287 V~eE~~fk~~~~~lk~~ld~~~v~~w~~~fq~l~~  321 (364)
                      ++..+..+++      +.+...++.|...++.++.
T Consensus       145 ~~~k~~~~~~------~~~~~~~~~~~~~~~~~~l  173 (260)
T TIGR00950       145 VLYKRLVKKE------GPELLQFTGWVLLLGALLL  173 (260)
T ss_pred             HHHhHHhhcC------CchHHHHHHHHHHHHHHHH
Confidence            9988854422      3445566667766665444

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.96  E-value=2.1e-08  Score=97.02  Aligned_cols=176  Identities=17%  Similarity=0.212  Sum_probs=120.2

Q ss_pred             HHHHHHHhhhhHHHHHHHHhCCCCChHHHHHHHHHhH-HHHHHHHHHHHHHhcCCcchhhhcCCCcceehhhHHHHHHH-
Q 017885          120 AAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFG-YVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAA-  197 (364)
Q Consensus       120 l~v~lvi~G~~N~V~~Kl~~~~~~~yp~fl~q~~t~~-yi~v~f~il~~r~~~~~i~~e~~~~p~~~f~i~GllD~~a~-  197 (364)
                      ++++..++|+.|.++.|...+.+.  |+....++... .+++. .  +.+  +.+       .+++..+..|++-.... 
T Consensus         8 ~~l~~~~~Wg~~~~~~k~~~~~~~--p~~~~~~R~~~a~~~l~-~--~~~--~~~-------~~~~~~~~~g~~~~~~~~   73 (299)
T PRK11453          8 LALLVVVVWGLNFVVIKVGLHNMP--PLMLAGLRFMLVAFPAI-F--FVA--RPK-------VPLNLLLGYGLTISFGQF   73 (299)
T ss_pred             HHHHHHHHHhhhHHHHHHHHhcCC--HHHHHHHHHHHHHHHHH-H--Hhc--CCC-------CchHHHHHHHHHHHHHHH
Confidence            466778899999999999987655  57777777543 22221 1  111  111       11122344455433333 


Q ss_pred             HHHHHHhhh-ccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeecCCCCCCCCCCcchHHHHHHH
Q 017885          198 ATGMAAGAI-LSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMI  276 (364)
Q Consensus       198 ~L~~ia~~y-ts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~s~~~~s~~~~~ll~~lL~i  276 (364)
                      .+.+.+..| +|++...++.++.++++++++++|+|+|++..+++|+++.++|+.+...++.++    .+....++++.+
T Consensus        74 ~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~----~~~~~~G~~l~l  149 (299)
T PRK11453         74 AFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNG----QHVAMLGFMLTL  149 (299)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCC----cchhHHHHHHHH
Confidence            345566677 577888999999999999999999999999999999999999998877543211    123457899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHH
Q 017885          277 VSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQA  318 (364)
Q Consensus       277 ls~i~~Ais~V~eE~~fk~~~~~lk~~ld~~~v~~w~~~fq~  318 (364)
                      +|+++.|+.+++.++..++.     ++.+...+..|......
T Consensus       150 ~aal~~a~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~  186 (299)
T PRK11453        150 AAAFSWACGNIFNKKIMSHS-----TRPAVMSLVVWSALIPI  186 (299)
T ss_pred             HHHHHHHHHHHHHHHHhccc-----CccchhHHHHHHHHHHH
Confidence            99999999999999854321     12444455556555543

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.93  E-value=3.5e-08  Score=95.43  Aligned_cols=162  Identities=11%  Similarity=0.004  Sum_probs=111.8

Q ss_pred             HHHHHHHhhhhHHHHHHHHhCCCCChHHHHHHHHHhHHHHHHHHHHHHHHhcCCcchhhhcCCCcceehhhHHHHHHHH-
Q 017885          120 AAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAA-  198 (364)
Q Consensus       120 l~v~lvi~G~~N~V~~Kl~~~~~~~yp~fl~q~~t~~yi~v~f~il~~r~~~~~i~~e~~~~p~~~f~i~GllD~~a~~-  198 (364)
                      +.++-.++|+.|.+..|...+.+.+  +.++.++...-..+.+.+  .+  ..+.    ++. +++.++.+.+-..... 
T Consensus         8 ~~l~a~~~Wg~~~~~~k~~~~~~~P--~~~~~~R~~~a~l~l~~~--~~--~~~~----~~~-~~~~~~~~~l~~~~~~~   76 (295)
T PRK11689          8 IGLIAILLWSTMVGLIRGVSESLGP--VGGAAMIYSVSGLLLLLT--VG--FPRL----RQF-PKRYLLAGGLLFVSYEI   76 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCh--HHHHHHHHHHHHHHHHHH--cc--cccc----ccc-cHHHHHHHhHHHHHHHH
Confidence            4566677799999999999887655  777777753322222211  11  1111    111 2345566655443333 


Q ss_pred             HHHHHhh----hccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeecCCC-CCC---CCCCcchH
Q 017885          199 TGMAAGA----ILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSN-PGH---SLKGAGIF  270 (364)
Q Consensus       199 L~~ia~~----yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~s~-~~~---s~~~~~ll  270 (364)
                      +.+.+..    ++++....++....++|+++++++|+|+|+++.+++|+++.++|+.++..++.+ +..   ...+....
T Consensus        77 ~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~  156 (295)
T PRK11689         77 CLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPL  156 (295)
T ss_pred             HHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChH
Confidence            3444544    456677789999999999999999999999999999999999999988865421 100   01123456


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 017885          271 WSLLMIVSFLLQAADTVLKEVI  292 (364)
Q Consensus       271 ~~lL~ils~i~~Ais~V~eE~~  292 (364)
                      |+++.++|++++|+.+++-++.
T Consensus       157 G~~~~l~aa~~~A~~~v~~k~~  178 (295)
T PRK11689        157 SYGLAFIGAFIWAAYCNVTRKY  178 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhc
Confidence            8999999999999999999984

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.77  E-value=7.2e-08  Score=93.35  Aligned_cols=158  Identities=14%  Similarity=0.090  Sum_probs=106.3

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHhCCCCChHHHHHHHHH-hHHHHHHHHHHHHHHhcCCcchhhh-cCCCcceehhh-HHHH
Q 017885          118 VIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLAT-FGYVAVYFSILYLRYHAGIVTDEML-SMPKAPFVAVG-LLEA  194 (364)
Q Consensus       118 ~il~v~lvi~G~~N~V~~Kl~~~~~~~yp~fl~q~~t-~~yi~v~f~il~~r~~~~~i~~e~~-~~p~~~f~i~G-llD~  194 (364)
                      .+++++-.+.++.+.++.|.. ..+.  |..+...+. ++.+.+ ..+...+.+.... +... +.+.+...+.+ ++=.
T Consensus        10 ~~~~l~a~~~wg~~~~~~k~~-~~~~--~~~~~~~R~~~a~~~l-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   84 (296)
T PRK15430         10 VLLALAAYFIWGIAPAYFKLI-YYVP--ADEILTHRVIWSFFFM-VVLMSICRQWSYL-KTLIQTPQKIFMLAVSAVLIG   84 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-cCCC--HHHHHHHHHHHHHHHH-HHHHHHHccHHHH-HHHHcCHHHHHHHHHHHHHHH
Confidence            445666667788899999986 3344  455665554 333222 2222222110000 0001 11112223344 4455


Q ss_pred             HHHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeecCCCCCCCCCCcchHHHHH
Q 017885          195 LAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLL  274 (364)
Q Consensus       195 ~a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~s~~~~s~~~~~ll~~lL  274 (364)
                      ....+.+.|..++|.+...++..+.++++++++++|+|+|.++.+|+|++++++|++++..++.       +.    .++
T Consensus        85 ~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~-------~~----~~~  153 (296)
T PRK15430         85 GNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFG-------SL----PII  153 (296)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcC-------Cc----cHH
Confidence            5677888888899999999999999999999999999999999999999999999998764421       11    145


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 017885          275 MIVSFLLQAADTVLKEV  291 (364)
Q Consensus       275 ~ils~i~~Ais~V~eE~  291 (364)
                      .++|++++|+.+++.++
T Consensus       154 ~l~aa~~~a~~~i~~r~  170 (296)
T PRK15430        154 ALGLAFSFAFYGLVRKK  170 (296)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            77889999999999887

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=98.75  E-value=1.7e-07  Score=92.63  Aligned_cols=200  Identities=20%  Similarity=0.297  Sum_probs=150.3

Q ss_pred             chhHHHHHHHHHHHhhhhHHHHHHHHhCC-CCChHHHHHHHHHhHHHHHHHHHHHHHHhcCCcchhh--hcCCCcceehh
Q 017885          113 RRVEIVIAAAVTVLLGVGNRVLYKLALVP-LKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEM--LSMPKAPFVAV  189 (364)
Q Consensus       113 ~~~~v~il~v~lvi~G~~N~V~~Kl~~~~-~~~yp~fl~q~~t~~yi~v~f~il~~r~~~~~i~~e~--~~~p~~~f~i~  189 (364)
                      +.+...+....-.++.....+..|...++ -++||.+++.++++.-....   +..+.. +..+...  .+.+.+..+.+
T Consensus        14 ~~~~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~---~v~~~l-~~~~~~~~~~~~~~~~llpl   89 (316)
T KOG1441|consen   14 KILRIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALAL---LVIKVL-KLVPPSKISSKLPLRTLLPL   89 (316)
T ss_pred             hhHHHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHH---HHHHHh-cCCCCCccccccchHHHHHH
Confidence            44555555666666777777788888887 68999999977432211111   111111 1111111  22344667889


Q ss_pred             hHHHHHHHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeecCCCCCCCCCCcch
Q 017885          190 GLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGI  269 (364)
Q Consensus       190 GllD~~a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~s~~~~s~~~~~l  269 (364)
                      |++-..+..++..++.|+|.+..|+.-...+|++.++++++.+++|+..-++-++.++.|+.+....+.       +-.+
T Consensus        90 ~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~-------~fn~  162 (316)
T KOG1441|consen   90 GLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTEL-------SFNL  162 (316)
T ss_pred             HHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccc-------cccH
Confidence            999999999999999999999999999999999999999999999999999999999999999876432       4467


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHhhhccc
Q 017885          270 FWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQALFICLLLPFLS  329 (364)
Q Consensus       270 l~~lL~ils~i~~Ais~V~eE~~fk~~~~~lk~~ld~~~v~~w~~~fq~l~~~lllP~~~  329 (364)
                      +|-+..++|.+..+.++++.|+.+++.    +.++|...+-...+-.++++.++  |+..
T Consensus       163 ~G~i~a~~s~~~~al~~I~~~~ll~~~----~~~~~~~~ll~y~ap~s~~~Ll~--P~~~  216 (316)
T KOG1441|consen  163 FGFISAMISNLAFALRNILSKKLLTSK----GESLNSMNLLYYTAPISLIFLLI--PFLD  216 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcc----ccccCchHHHHHhhhHHHHHHhc--chHh
Confidence            888999999999999999999988531    23588888888888887655442  6543

>TIGR00688 rarD rarD protein

Probab=98.72  E-value=7.2e-08  Score=90.91  Aligned_cols=158  Identities=16%  Similarity=0.046  Sum_probs=108.9

Q ss_pred             HHHHHHHHhhhhHHHHHHHHhCCCCChHHHHHHHHHhHHHHHHHHHHHHHHhcCCcchhhhc-CCCc----ceehhhHHH
Q 017885          119 IAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLS-MPKA----PFVAVGLLE  193 (364)
Q Consensus       119 il~v~lvi~G~~N~V~~Kl~~~~~~~yp~fl~q~~t~~yi~v~f~il~~r~~~~~i~~e~~~-~p~~----~f~i~GllD  193 (364)
                      ++.++-.++++.|.++.|... .+.  |+.+...+.+.-.++.+.+...+.++.. .++..+ .+++    ...+.|++=
T Consensus         5 ~~~i~a~~~wg~~~~~~k~~~-~~~--~~~i~~~R~~~a~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~   80 (256)
T TIGR00688         5 IVSLLASFLFGYMYYYSKLLK-PLP--ATDILGHRMIWSFPFMLLSVTLFRQWAA-LIERLKRIQKRPLILSLLLCGLLI   80 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc-cCC--HHHHHHHHHHHHHHHHHHHHHHHcchHH-HHHHHhCcccchHHHHHHHHHHHH
Confidence            345566677999999999843 333  4667766754322222222222211100 011111 1111    145567777


Q ss_pred             HHHHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeecCCCCCCCCCCcchHHHH
Q 017885          194 ALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSL  273 (364)
Q Consensus       194 ~~a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~s~~~~s~~~~~ll~~l  273 (364)
                      .....+.+.|.+|++.+...++.++.+.|+++++++|+|+|.++.+|+|+++.++|++++..++.       +..    +
T Consensus        81 ~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~-------~~~----~  149 (256)
T TIGR00688        81 GFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKG-------SLP----W  149 (256)
T ss_pred             HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcC-------Cch----H
Confidence            77888889999999999999999999999999999999999999999999999999987654421       111    3


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 017885          274 LMIVSFLLQAADTVLKEV  291 (364)
Q Consensus       274 L~ils~i~~Ais~V~eE~  291 (364)
                      +.+++++++|+-+++.++
T Consensus       150 ~~l~aa~~~a~~~i~~~~  167 (256)
T TIGR00688       150 EALVLAFSFTAYGLIRKA  167 (256)
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            567889999999999887

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.69  E-value=3.7e-07  Score=89.07  Aligned_cols=170  Identities=15%  Similarity=0.161  Sum_probs=136.0

Q ss_pred             CChHHHHHHHHHhHHHHHHHHHHHHHHhcCCcchhhhcCCCcceehhhHHHHHHHHHHHHHhhhccccHHHHhcchhHHH
Q 017885          143 KHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVW  222 (364)
Q Consensus       143 ~~yp~fl~q~~t~~yi~v~f~il~~r~~~~~i~~e~~~~p~~~f~i~GllD~~a~~L~~ia~~yts~s~~~mL~qs~Ipf  222 (364)
                      +++|-|+..++.++-+.+-.  .+.+.++..   .....|.|+|...++-+.+++.+++.|+.|++=+.+.+--..=++-
T Consensus        48 F~~~~fL~~~q~l~~~~~s~--~~l~~~k~~---~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIP  122 (327)
T KOG1581|consen   48 FEHSLFLVFCQRLVALLVSY--AMLKWWKKE---LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIP  122 (327)
T ss_pred             ccccHHHHHHHHHHHHHHHH--HHHhccccc---CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhH
Confidence            77899999888877666553  233333322   2334677999999999999999999999999999999888888888


Q ss_pred             HHHHHHHHhcCcccccccchhhheeeeeeEEeecCCCCCCC--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017885          223 QILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHS--LKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRL  300 (364)
Q Consensus       223 T~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~s~~~~s--~~~~~ll~~lL~ils~i~~Ais~V~eE~~fk~~~~~l  300 (364)
                      +|++-.+.-|+||+..+|+.++++.+|+.+-...+++++.+  ...|++.|.+|+...-.+.++-|..+.++|+.+    
T Consensus       123 Vmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~----  198 (327)
T KOG1581|consen  123 VMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKY----  198 (327)
T ss_pred             HHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccC----
Confidence            99999999999999999999999999999877654333222  225999999999999999999999999999965    


Q ss_pred             cCCCChhhHHHHHHHHHHHHHHH
Q 017885          301 KGGVDLFVVNSYGSAFQALFICL  323 (364)
Q Consensus       301 k~~ld~~~v~~w~~~fq~l~~~l  323 (364)
                        ++..+.+.....+|.+++...
T Consensus       199 --k~s~~~mM~~vNLf~~i~~~~  219 (327)
T KOG1581|consen  199 --KVSSLHMMFGVNLFSAILNGT  219 (327)
T ss_pred             --CccHhHHHHHHHHHHHHHHHH
Confidence              577776666666666555433

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=98.66  E-value=1.7e-07  Score=93.65  Aligned_cols=151  Identities=29%  Similarity=0.269  Sum_probs=123.1

Q ss_pred             ehhhHHHHHHHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeecCCCCCC-CCC
Q 017885          187 VAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGH-SLK  265 (364)
Q Consensus       187 ~i~GllD~~a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~s~~~~-s~~  265 (364)
                      +....+=.++++....|+.||+.+++.+|+.+.=.||+.++.+|..+|+++.+.+++++.+.|++++...|+.+.+ ..+
T Consensus       163 l~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a  242 (416)
T KOG2765|consen  163 LFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPA  242 (416)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCc
Confidence            4456667789999999999999999999999999999999999999999999999999999999999998765433 355


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHhhhccccccCCCCCCchHH
Q 017885          266 GAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQALFICLLLPFLSKLWGIPFSQLPIY  342 (364)
Q Consensus       266 ~~~ll~~lL~ils~i~~Ais~V~eE~~fk~~~~~lk~~ld~~~v~~w~~~fq~l~~~lllP~~~~~~g~~f~~lp~~  342 (364)
                      ++..+|+++-++|++.||+=.|.-.+...+.    ++++|.-.+-|+.++|.++...+.+.++... |.+-.++|+.
T Consensus       243 ~~~llG~llaL~sA~~YavY~vllk~~~~~e----g~rvdi~lffGfvGLfnllllwP~l~iL~~~-~~e~F~lP~~  314 (416)
T KOG2765|consen  243 SRPLLGNLLALLSALLYAVYTVLLKRKIGDE----GERVDIQLFFGFVGLFNLLLLWPPLIILDFF-GEERFELPSS  314 (416)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhcccc----cccccHHHHHHHHHHHHHHHHhHHHHHHHHh-ccCcccCCCC
Confidence            7789999999999999999998877744432    2359999999999999887766544333333 4444455543

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.62  E-value=1.6e-06  Score=80.92  Aligned_cols=168  Identities=21%  Similarity=0.149  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHhCCCCChHHHHHHH-HHhHHHHHHHHHHHHHHhcCCcchhhhcCCCcceeh-hhHHH
Q 017885          116 EIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQL-ATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVA-VGLLE  193 (364)
Q Consensus       116 ~v~il~v~lvi~G~~N~V~~Kl~~~~~~~yp~fl~q~-~t~~yi~v~f~il~~r~~~~~i~~e~~~~p~~~f~i-~GllD  193 (364)
                      ...+..+...+.+..+....|...+.  +.|.+...+ +.+.-...   .+....+... .......+.++.++ -+++.
T Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   80 (292)
T COG0697           7 LGLLALLLWGLLWGLSFIALKLAVES--LDPFLFAAALRFLIAALL---LLPLLLLEPR-GLRPALRPWLLLLLLALLGL   80 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcc--cCChHHHHHHHHHHHHHH---HHHHHHhhcc-cccccccchHHHHHHHHHHH
Confidence            33444555557888888888888876  444444433 22221111   1111111110 00111111223344 45677


Q ss_pred             HHHHHHHHHHhhhccccHHHHhcchhHHHHHHHHH-HHhcCcccccccchhhheeeeeeEEeecCCCCCCCCCCcchHHH
Q 017885          194 ALAAATGMAAGAILSGASIPILSQTFLVWQILLSI-IFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWS  272 (364)
Q Consensus       194 ~~a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~-iFLkrRy~~~q~lGv~ivliGvivv~~s~s~~~~s~~~~~ll~~  272 (364)
                      .....+.+.+..+++.+...++..+.+.++.++++ +++|+|.++.++.|.++.++|++++..++.....   . ...+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~---~-~~~g~  156 (292)
T COG0697          81 ALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGI---L-SLLGL  156 (292)
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchh---H-HHHHH
Confidence            88888888888899999999999999999999997 7779999999999999999999999988643221   1 57889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 017885          273 LLMIVSFLLQAADTVLKEVIF  293 (364)
Q Consensus       273 lL~ils~i~~Ais~V~eE~~f  293 (364)
                      ++.+++.+..|+.+++.++..
T Consensus       157 ~~~l~a~~~~a~~~~~~~~~~  177 (292)
T COG0697         157 LLALAAALLWALYTALVKRLS  177 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999853

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.58  E-value=3.8e-08  Score=82.45  Aligned_cols=100  Identities=20%  Similarity=0.188  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHhcCCcchhhhcCCCcceehhhHHHH-HHHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccc
Q 017885          159 AVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEA-LAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRV  237 (364)
Q Consensus       159 ~v~f~il~~r~~~~~i~~e~~~~p~~~f~i~GllD~-~a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~  237 (364)
                      ++...+...+.+.+...++.++.+.+.....|++.. .+..+.+.|..++++ ...++.+..++|+++++++|+|+|.+.
T Consensus        10 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~   88 (113)
T PF13536_consen   10 LFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSP   88 (113)
T ss_pred             HHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence            333333444433333333333333334455588886 888888888889995 777999999999999999999999999


Q ss_pred             cccchhhheeeeeeEEeecCCC
Q 017885          238 NQLFGCFLVGIGVIITVASGSN  259 (364)
Q Consensus       238 ~q~lGv~ivliGvivv~~s~s~  259 (364)
                      .+++|++++++|++++..++.+
T Consensus        89 ~~~~a~~l~~~Gv~li~~~~~~  110 (113)
T PF13536_consen   89 RRWLAILLILIGVILIAWSDLT  110 (113)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcc
Confidence            9999999999999999988654

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.53  E-value=7.1e-07  Score=85.59  Aligned_cols=103  Identities=10%  Similarity=0.005  Sum_probs=84.2

Q ss_pred             cceehh-hHHHHHHHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeecCCCCCC
Q 017885          184 APFVAV-GLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGH  262 (364)
Q Consensus       184 ~~f~i~-GllD~~a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~s~~~~  262 (364)
                      +.+++. |+.......+.+.|+++++.+...++..+.++++++++++|+|+|++.++|+|+.++++|+.++..++..   
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~---  139 (281)
T TIGR03340        63 WLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFA---  139 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccccc---
Confidence            334444 5567888888899999999999999999999999999999999999999999999999999987655321   


Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 017885          263 SLKGAGIFWSLLMIVSFLLQAADTVLKEVI  292 (364)
Q Consensus       263 s~~~~~ll~~lL~ils~i~~Ais~V~eE~~  292 (364)
                         .....+.++.+++.+++|+.+++.++.
T Consensus       140 ---~~~~~g~~~~l~aal~~a~~~i~~k~~  166 (281)
T TIGR03340       140 ---QHRRKAYAWALAAALGTAIYSLSDKAA  166 (281)
T ss_pred             ---ccchhHHHHHHHHHHHHHHhhhhcccc
Confidence               112345567889999999999876653

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.39  E-value=4.5e-07  Score=74.33  Aligned_cols=122  Identities=21%  Similarity=0.172  Sum_probs=85.7

Q ss_pred             hhhhHHHHHHHHhCCCCChHHHHHHHHHhHHHHHHHHHHHHHHhcCCcchhhhcCCCcceehhhHH-HHHHHHHHHHHhh
Q 017885          127 LGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLL-EALAAATGMAAGA  205 (364)
Q Consensus       127 ~G~~N~V~~Kl~~~~~~~yp~fl~q~~t~~yi~v~f~il~~r~~~~~i~~e~~~~p~~~f~i~Gll-D~~a~~L~~ia~~  205 (364)
                      +++...++.|...++..+  ...+..+.+.-.+ .+.+.....+.+  .++........+++.|.+ -..+..+.+.|..
T Consensus         2 ~~a~~~~~~k~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   76 (126)
T PF00892_consen    2 SWAIYSVFSKKLLKKISP--LSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK   76 (126)
T ss_pred             eeeeHHHHHHHHhccCCH--HHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence            467788889998888443  4444444322222 222222222221  011111111346677877 5889999999999


Q ss_pred             hccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEE
Q 017885          206 ILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIIT  253 (364)
Q Consensus       206 yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv  253 (364)
                      +++++...++....++++++++++++|+|++..+++|++++++|++++
T Consensus        77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI  124 (126)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=98.29  E-value=6.3e-07  Score=86.38  Aligned_cols=168  Identities=17%  Similarity=0.196  Sum_probs=108.9

Q ss_pred             chhHHHHHHHHHHHhhhhHHHHHHHHhCCCCChHHHHHHHHHhHHHHHHHHHH-HHHHhcCCcchhhhcCCCcceehh-h
Q 017885          113 RRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSIL-YLRYHAGIVTDEMLSMPKAPFVAV-G  190 (364)
Q Consensus       113 ~~~~v~il~v~lvi~G~~N~V~~Kl~~~~~~~yp~fl~q~~t~~yi~v~f~il-~~r~~~~~i~~e~~~~p~~~f~i~-G  190 (364)
                      .+..++.+.+. ..+-++-.++.|...+    -|.-+++.+.++=..+-.+++ ++++.- .-++     ++++++++ |
T Consensus        36 p~~gl~l~~vs-~ff~~~~vv~t~~~e~----~p~e~a~~r~l~~mlit~pcliy~~~~v-~gp~-----g~R~~LiLRg  104 (346)
T KOG4510|consen   36 PNLGLLLLTVS-YFFNSCMVVSTKVLEN----DPMELASFRLLVRMLITYPCLIYYMQPV-IGPE-----GKRKWLILRG  104 (346)
T ss_pred             CccCceehhhH-HHHhhHHHhhhhhhcc----ChhHhhhhhhhhehhhhheEEEEEeeee-ecCC-----CcEEEEEeeh
Confidence            44444444444 4555666666666543    344455544222111111221 222110 0122     23555555 8


Q ss_pred             HHHHHHHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeecC----CC-CCC-CC
Q 017885          191 LLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASG----SN-PGH-SL  264 (364)
Q Consensus       191 llD~~a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~----s~-~~~-s~  264 (364)
                      +.-..+-.+++.++.|.+.+=..+..-+.+.||.++||++||+||+.++.+|..+.+.|+++.+-|.    +. .+. +.
T Consensus       105 ~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s  184 (346)
T KOG4510|consen  105 FMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSS  184 (346)
T ss_pred             hhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccc
Confidence            8899999999999999999999999999999999999999999999999999999999999999873    11 111 11


Q ss_pred             C-CcchHHHHHHHHHHHHHHHHHHHHHH
Q 017885          265 K-GAGIFWSLLMIVSFLLQAADTVLKEV  291 (364)
Q Consensus       265 ~-~~~ll~~lL~ils~i~~Ais~V~eE~  291 (364)
                      . +....+...-+.|.+..|.-.++-.+
T Consensus       185 ~~~~~~~gt~aai~s~lf~asvyIilR~  212 (346)
T KOG4510|consen  185 QVEYDIPGTVAAISSVLFGASVYIILRY  212 (346)
T ss_pred             cccccCCchHHHHHhHhhhhhHHHHHHH
Confidence            1 23344566777777777666665555

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.28  E-value=4.5e-05  Score=73.76  Aligned_cols=157  Identities=12%  Similarity=-0.056  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHhCCCCChHHHHHHHHHhHHHHHHHHHHHHHHhcCCcchhhhcCCCcceehhhHHHHHH
Q 017885          117 IVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALA  196 (364)
Q Consensus       117 v~il~v~lvi~G~~N~V~~Kl~~~~~~~yp~fl~q~~t~~yi~v~f~il~~r~~~~~i~~e~~~~p~~~f~i~GllD~~a  196 (364)
                      +..++++++. ++.|.++.|...+...+  +.+...+...-.++.+.+.  +.++...+++.    +++.++.|++-...
T Consensus        14 ~~~~~la~~~-~~~~~~~~K~~~~~~~~--~~~~~~R~~~a~l~l~~~~--~~~~~~~~~~~----~~~~~~~g~~~~~~   84 (293)
T PRK10532         14 ILLLLIAMAS-IQSGASLAKSLFPLVGA--PGVTALRLALGTLILIAIF--KPWRLRFAKEQ----RLPLLFYGVSLGGM   84 (293)
T ss_pred             HHHHHHHHHH-HHhhHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHH--hHHhccCCHHH----HHHHHHHHHHHHHH
Confidence            3334444444 55777799999886555  5566666543332222221  21111112111    13356778888888


Q ss_pred             HHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeecCCCCCCCCCCcchHHHHHHH
Q 017885          197 AATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMI  276 (364)
Q Consensus       197 ~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~s~~~~s~~~~~ll~~lL~i  276 (364)
                      +.+.+.+.+|+|.+...++..+.+.++++++.    +|.+.  +.++.+.++|+.++..++.+.    ++....|+++.+
T Consensus        85 ~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~--~~~~~i~~~Gv~li~~~~~~~----~~~~~~G~ll~l  154 (293)
T PRK10532         85 NYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVD--FVWVVLAVLGLWFLLPLGQDV----SHVDLTGAALAL  154 (293)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHH--HHHHHHHHHHHheeeecCCCc----ccCChHHHHHHH
Confidence            88888999999999999999888989888773    55544  456777889988776543221    123467999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 017885          277 VSFLLQAADTVLKEVI  292 (364)
Q Consensus       277 ls~i~~Ais~V~eE~~  292 (364)
                      +|.+++|+.+++-++.
T Consensus       155 ~aa~~~a~~~v~~r~~  170 (293)
T PRK10532        155 GAGACWAIYILSGQRA  170 (293)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998874

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.27  E-value=5.8e-06  Score=71.85  Aligned_cols=133  Identities=23%  Similarity=0.257  Sum_probs=95.9

Q ss_pred             HHHHHHHHhhhhHHHHHHHHhCCCCChHHHHHHHHHhHHHHHHHHHHHHHHhcCCcchhhhcCCCcceehh-hHHHHHHH
Q 017885          119 IAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAV-GLLEALAA  197 (364)
Q Consensus       119 il~v~lvi~G~~N~V~~Kl~~~~~~~yp~fl~q~~t~~yi~v~f~il~~r~~~~~i~~e~~~~p~~~f~i~-GllD~~a~  197 (364)
                      +++++-..+.+...++.|+-.+.+-+  -|-+..+++.-..+...+++. ..+.+.+.| ..-+.|-|++. |+.-.++-
T Consensus         6 ~~ALLsA~fa~L~~iF~KIGl~~vdp--~~At~IRtiVi~~~l~~v~~~-~g~~~~~~~-~~~k~~lflilSGla~glsw   81 (140)
T COG2510           6 IYALLSALFAGLTPIFAKIGLEGVDP--DFATTIRTIVILIFLLIVLLV-TGNWQAGGE-IGPKSWLFLILSGLAGGLSW   81 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccCc--cHHHHHHHHHHHHHHHHHHHh-cCceecccc-cCcceehhhhHHHHHHHHHH
Confidence            45666677889999999999887654  566666665433322222221 111111111 12222667776 56677777


Q ss_pred             HHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEee
Q 017885          198 ATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVA  255 (364)
Q Consensus       198 ~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~  255 (364)
                      .+-|.|+..=.+|...-++-+.+.++.++|++|||+|++..+|+|+.++++|.+++..
T Consensus        82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            7888888888888889999999999999999999999999999999999999998753

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=98.02  E-value=3.7e-06  Score=81.36  Aligned_cols=96  Identities=23%  Similarity=0.295  Sum_probs=76.2

Q ss_pred             HHhh-hccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeecCCCCCCC------CC---Ccc---
Q 017885          202 AAGA-ILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHS------LK---GAG---  268 (364)
Q Consensus       202 ia~~-yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~s~~~~s------~~---~~~---  268 (364)
                      .|.. ..|-++-.+.|.....-+|+++++.+||||+..|+..++++.+|+++.-...+.++.+      .+   +..   
T Consensus        83 ~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w  162 (330)
T KOG1583|consen   83 YALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWW  162 (330)
T ss_pred             ceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHH
Confidence            3444 6778888999999999999999999999999999999999999999977632221110      11   111   


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017885          269 IFWSLLMIVSFLLQAADTVLKEVIFLDAA  297 (364)
Q Consensus       269 ll~~lL~ils~i~~Ais~V~eE~~fk~~~  297 (364)
                      .+|+.+..+|.+..|..-.|+|...++|-
T Consensus       163 ~iGi~lL~~al~~sa~mgiyqE~~Y~kyG  191 (330)
T KOG1583|consen  163 LIGIALLVFALLLSAYMGIYQETTYQKYG  191 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            44678888999999999999999988773

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=97.87  E-value=0.0005  Score=66.82  Aligned_cols=102  Identities=21%  Similarity=0.124  Sum_probs=84.1

Q ss_pred             hHHHHHHHHHHHHHhhhccccHHHHhcc-hhHHHHHHHHHHHhcCcccccc----cchhhheeeeeeEEeecCCCCCCCC
Q 017885          190 GLLEALAAATGMAAGAILSGASIPILSQ-TFLVWQILLSIIFLGRRYRVNQ----LFGCFLVGIGVIITVASGSNPGHSL  264 (364)
Q Consensus       190 GllD~~a~~L~~ia~~yts~s~~~mL~q-s~IpfT~llS~iFLkrRy~~~q----~lGv~ivliGvivv~~s~s~~~~s~  264 (364)
                      |++-..+++..+.+..++..+....+.+ ..+.++.+++.+++|+|.+..+    ++|++++++|++++...+.++.+.+
T Consensus        66 G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~  145 (290)
T TIGR00776        66 GAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIK  145 (290)
T ss_pred             HHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccc
Confidence            4557889999999999999999988888 6677899999999999999999    9999999999999877643221101


Q ss_pred             C-CcchHHHHHHHHHHHHHHHHHHHHHH
Q 017885          265 K-GAGIFWSLLMIVSFLLQAADTVLKEV  291 (364)
Q Consensus       265 ~-~~~ll~~lL~ils~i~~Ais~V~eE~  291 (364)
                      + .+...+.++-++|.+.+|...+.-++
T Consensus       146 ~~~~~~~Gi~~~l~sg~~y~~~~~~~~~  173 (290)
T TIGR00776       146 SEFNFKKGILLLLMSTIGYLVYVVVAKA  173 (290)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            0 33366999999999999999999886

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=97.65  E-value=0.00044  Score=64.58  Aligned_cols=130  Identities=16%  Similarity=0.111  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHhCCCCChHHHHHHHHHhHHHHHHHHHHHHHHhcCCcchhhhcCCCcceehhhHHH-HH
Q 017885          117 IVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLE-AL  195 (364)
Q Consensus       117 v~il~v~lvi~G~~N~V~~Kl~~~~~~~yp~fl~q~~t~~yi~v~f~il~~r~~~~~i~~e~~~~p~~~f~i~GllD-~~  195 (364)
                      =.++.++-.++++.+.+..|...+...+.+...+..+.+.-.++.++..... .... ......  ....+..|.+. ..
T Consensus       129 G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~-~~~~~~--~~~~~~~~~~~~~~  204 (260)
T TIGR00950       129 GLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFL-GPNP-QALSLQ--WGALLYLGLIGTAL  204 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhc-CCCC-CcchHH--HHHHHHHHHHHHHH
Confidence            3345556666777888888888765554333333222211111111111111 1110 000000  12245567665 56


Q ss_pred             HHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeee
Q 017885          196 AAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGV  250 (364)
Q Consensus       196 a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGv  250 (364)
                      +..+.+.+..+++++....+....+++++++++++++++++..+++|+.+++.|+
T Consensus       205 ~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       205 AYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            7777777888999999999999999999999999999999999999999999886

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=97.38  E-value=0.00023  Score=67.94  Aligned_cols=133  Identities=15%  Similarity=0.199  Sum_probs=90.9

Q ss_pred             CCcceehhhHHHHHHHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeecCCCCC
Q 017885          182 PKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPG  261 (364)
Q Consensus       182 p~~~f~i~GllD~~a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~s~~~  261 (364)
                      |.|.|+.-++--.++-.-..-|++|+|=+.+.+=...=++=+|++-++|+||+|++.+|.+++++++|+++-..-...-+
T Consensus        84 ~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~  163 (337)
T KOG1580|consen   84 PTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVG  163 (337)
T ss_pred             cchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccC
Confidence            33445444433333334445566677766654444444555789999999999999999999999999998776422111


Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHH
Q 017885          262 HSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAF  316 (364)
Q Consensus       262 ~s~~~~~ll~~lL~ils~i~~Ais~V~eE~~fk~~~~~lk~~ld~~~v~~w~~~f  316 (364)
                      +.....-.+|-+|.++|-...++--+.+|++=+.|  +-.+.--.++.|.|.+++
T Consensus       164 g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~y--q~~g~~MM~~~NlwStL~  216 (337)
T KOG1580|consen  164 GAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASY--QRTGTSMMFYTNLWSTLY  216 (337)
T ss_pred             CCcccccchHHHHHHHHHHhcccchhHHHHHHHhh--ccCchhhHHHHHHHHHHH
Confidence            12234556788999999999999999999975555  222234567888888776

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=97.36  E-value=0.0023  Score=63.13  Aligned_cols=175  Identities=15%  Similarity=0.212  Sum_probs=115.4

Q ss_pred             HHHHHHHhCCCCChHHHHHHHHHhHHHHHHHHHHHHHHhcCCcchhhhcCCC----cceehhhHHHHHHHHHHHHHhhhc
Q 017885          132 RVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPK----APFVAVGLLEALAAATGMAAGAIL  207 (364)
Q Consensus       132 ~V~~Kl~~~~~~~yp~fl~q~~t~~yi~v~f~il~~r~~~~~i~~e~~~~p~----~~f~i~GllD~~a~~L~~ia~~yt  207 (364)
                      +-..|+.... +++|-|.+.++...=  ..|+.+..+-++...++....+.+    ++.+.-|++.+.--=+...+..|+
T Consensus        32 tf~~~~~~~~-f~fPLf~ts~h~~v~--flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yV  108 (349)
T KOG1443|consen   32 TFYFKWLTKN-FHFPLFVTSLHLAVK--FLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYV  108 (349)
T ss_pred             HHHhhhhhcC-cCCchHHHHHHHHHH--HHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeee
Confidence            4444444433 788888886664321  122333332222222221112222    234455666666667888999999


Q ss_pred             cccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeecCCCCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 017885          208 SGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTV  287 (364)
Q Consensus       208 s~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~s~~~~s~~~~~ll~~lL~ils~i~~Ais~V  287 (364)
                      +.+.+.|-..++|.|.+++|.+|-=+|+++.-.+=++++.+|+++...-.+       +-.+.|-.++..|.++.++-=+
T Consensus       109 tlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsT-------qf~i~Gf~lv~~aS~~sGlRW~  181 (349)
T KOG1443|consen  109 TLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKST-------QFNIEGFFLVLAASLLSGLRWA  181 (349)
T ss_pred             eeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccc-------ceeehhHHHHHHHHHhhhhhHH
Confidence            999999999999999999999997788888777777777788888765432       3457788999999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCC-hhhHHHHHHHH
Q 017885          288 LKEVIFLDAAQRLKGGVD-LFVVNSYGSAF  316 (364)
Q Consensus       288 ~eE~~fk~~~~~lk~~ld-~~~v~~w~~~f  316 (364)
                      +.++++++..-...++.| .+++.-|-++.
T Consensus       182 ~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~  211 (349)
T KOG1443|consen  182 FTQMLLRNQPSAKRNPIDTIFHLQPWMSIG  211 (349)
T ss_pred             HHHHHHhcCccccCCCeeeHHHhhhHHHHH
Confidence            999999975111112333 33455565554

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=97.33  E-value=0.0003  Score=68.37  Aligned_cols=185  Identities=16%  Similarity=0.212  Sum_probs=133.5

Q ss_pred             eeeeccccccccchhHHHHHHHHHHHhhhhHHHHHHHHhC--CCCChHHHHHHHHHhHHHHHHHHHHHHHHhcCCcchhh
Q 017885          101 TVEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALV--PLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEM  178 (364)
Q Consensus       101 ~~~~~~~~~~~~~~~~v~il~v~lvi~G~~N~V~~Kl~~~--~~~~yp~fl~q~~t~~yi~v~f~il~~r~~~~~i~~e~  178 (364)
                      +..++..+| ++ -.+..++..+.-..-..|-.+..+..+  .+.+|-|+++..++..|..+....+      ..+..+.
T Consensus        30 llg~~ls~k-pk-w~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~------~~~~~k~  101 (367)
T KOG1582|consen   30 LLGFNLSDK-PK-WTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIEL------QLIQTKR  101 (367)
T ss_pred             EEeeccccC-ch-hhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEE------Eeecccc
Confidence            444543333 32 245555555554445555555555544  4677889999999888865542111      1123344


Q ss_pred             hcCCCcceehhhHHHHHHHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeecCC
Q 017885          179 LSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGS  258 (364)
Q Consensus       179 ~~~p~~~f~i~GllD~~a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~s  258 (364)
                      +..|++-|.+++++.+-.-=|..-.+.|+.=+.|.|.-+.=+.=+|+.+.++=++||...++..+.+..+|++.--..|+
T Consensus       102 r~iP~rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs  181 (367)
T KOG1582|consen  102 RVIPWRTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADS  181 (367)
T ss_pred             eecchhHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhccc
Confidence            56788889999988777777777777799999999999998888999999999999999999999999999998777776


Q ss_pred             CCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017885          259 NPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDA  296 (364)
Q Consensus       259 ~~~~s~~~~~ll~~lL~ils~i~~Ais~V~eE~~fk~~  296 (364)
                      ...+   .-++.|..++-.|-+..|+---.||+.++.+
T Consensus       182 ~~sP---NF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~  216 (367)
T KOG1582|consen  182 QTSP---NFNLIGVMMISGALLADAVIGNVQEKAMKMN  216 (367)
T ss_pred             ccCC---CcceeeHHHHHHHHHHHHHhhHHHHHHHhhC
Confidence            5333   3456677777777788888888899999965

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.12  E-value=0.00048  Score=67.77  Aligned_cols=74  Identities=24%  Similarity=0.427  Sum_probs=66.2

Q ss_pred             ceehhh-HHHHHHHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeecCC
Q 017885          185 PFVAVG-LLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGS  258 (364)
Q Consensus       185 ~f~i~G-llD~~a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~s  258 (364)
                      +..+.| +++.++..+.++|+.+.|.++.+-|....++++++++..+||+|.++.+++|+.++++|.++++..+.
T Consensus        51 ~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~  125 (300)
T PF05653_consen   51 PLWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAP  125 (300)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCC
Confidence            445566 45788999999999999999999999999999999999999999999999999999999998876543

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.10  E-value=0.0039  Score=61.62  Aligned_cols=167  Identities=17%  Similarity=0.162  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHhCCCCChHHHHHH--HHHhHHHHHHHHHHHHHHhcCCcchhhhcCCC-cceehhhHH
Q 017885          116 EIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQ--LATFGYVAVYFSILYLRYHAGIVTDEMLSMPK-APFVAVGLL  192 (364)
Q Consensus       116 ~v~il~v~lvi~G~~N~V~~Kl~~~~~~~yp~fl~q--~~t~~yi~v~f~il~~r~~~~~i~~e~~~~p~-~~f~i~Gll  192 (364)
                      +-+..++.+.+....-++.-|+.... +|||..+..  .|.+..+.+.    +...+.|.++-+..++.. +|++.+.++
T Consensus        12 ~~l~sa~~Y~~sS~lm~vvNK~vls~-y~f~~~l~l~~~Q~l~s~~~v----~~lk~~~lv~~~~l~~~~~kk~~P~~~l   86 (314)
T KOG1444|consen   12 SPLLSALFYCLSSILMTVVNKIVLSS-YNFPMGLLLMLLQSLASVLVV----LVLKRLGLVNFRPLDLRTAKKWFPVSLL   86 (314)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHHHH----HHHHHhceeecCCcChHHHHHHccHHHH
Confidence            33566788888888888888998763 344444443  5555444332    122233333323222221 566777777


Q ss_pred             HHHHHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeecCCCCCCCCCCcchHHH
Q 017885          193 EALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWS  272 (364)
Q Consensus       193 D~~a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~s~~~~s~~~~~ll~~  272 (364)
                      =...-+....++.|.+.+++.+++...|.++++.=..|+|+|++..-|..++..++|-.+...+|..       -...|-
T Consensus        87 f~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~s-------f~~~gY  159 (314)
T KOG1444|consen   87 FVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLS-------FNLRGY  159 (314)
T ss_pred             HHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccce-------ecchhH
Confidence            7777888888888999999999999999999999999999999999999999988887777666532       122345


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 017885          273 LLMIVSFLLQAADTVLKEVIFL  294 (364)
Q Consensus       273 lL~ils~i~~Ais~V~eE~~fk  294 (364)
                      ..++..++..+.-.++-++..+
T Consensus       160 ~w~~~n~~~~a~~~v~~kk~vd  181 (314)
T KOG1444|consen  160 SWALANCLTTAAFVVYVKKSVD  181 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhc
Confidence            5667788888888999888555

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.10  E-value=0.00078  Score=65.61  Aligned_cols=115  Identities=16%  Similarity=0.162  Sum_probs=88.6

Q ss_pred             hhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeecCCCCCCCCCCcchHHHHHHHHHHHHHH
Q 017885          204 GAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQA  283 (364)
Q Consensus       204 ~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~s~~~~s~~~~~ll~~lL~ils~i~~A  283 (364)
                      +.|++.+.+++=|....|||.++++.+||.|=+..-..||+++++|-.+    |.+.+++.+.-++.|.++-+.|.+..|
T Consensus       123 L~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~l----GvdqE~~~~~ls~~GvifGVlaSl~vA  198 (347)
T KOG1442|consen  123 LKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGL----GVDQEGSTGTLSWIGVIFGVLASLAVA  198 (347)
T ss_pred             hhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehhee----ccccccccCccchhhhHHHHHHHHHHH
Confidence            4588899999999999999999999999999999999999999988776    333444455778899999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCh-hhHHHHHHHHHHHHHHHhhhccc
Q 017885          284 ADTVLKEVIFLDAAQRLKGGVDL-FVVNSYGSAFQALFICLLLPFLS  329 (364)
Q Consensus       284 is~V~eE~~fk~~~~~lk~~ld~-~~v~~w~~~fq~l~~~lllP~~~  329 (364)
                      +-.+|..+..-       .-.|. +.+..+.+++..+..++++-++.
T Consensus       199 lnaiytkk~l~-------~v~~~iw~lt~ynnv~a~lLflpll~lng  238 (347)
T KOG1442|consen  199 LNAIYTKKVLP-------PVGDCIWRLTAYNNVNALLLFLPLLILNG  238 (347)
T ss_pred             HHHHhhheecc-------cccCeehhhHHHHHHHHHHHHHHHHHHcc
Confidence            99999886422       11343 44555667776655544444433

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=96.99  E-value=0.0044  Score=53.34  Aligned_cols=67  Identities=27%  Similarity=0.392  Sum_probs=61.0

Q ss_pred             eehhhHHHHHHHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeE
Q 017885          186 FVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVII  252 (364)
Q Consensus       186 f~i~GllD~~a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGviv  252 (364)
                      +++.|++-...++..+.-..++++...++++..=.+.+.++|+++++++.+..+++|..++++|+++
T Consensus        84 ~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   84 LILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence            4556777888888888888899999999999999999999999999999999999999999999865

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=96.90  E-value=0.0011  Score=63.54  Aligned_cols=67  Identities=27%  Similarity=0.409  Sum_probs=59.7

Q ss_pred             eehh-hHHHHHHHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeE
Q 017885          186 FVAV-GLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVII  252 (364)
Q Consensus       186 f~i~-GllD~~a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGviv  252 (364)
                      .+.. +++...+..+.+.+..+.+++....+....++++.+++++++|++.+..|++|..++++|+.+
T Consensus       213 ~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       213 SATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            3344 466777888888999999999999999999999999999999999999999999999999865

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>TIGR00803 nst UDP-galactose transporter

Probab=96.83  E-value=0.0057  Score=56.65  Aligned_cols=108  Identities=18%  Similarity=0.062  Sum_probs=82.5

Q ss_pred             ehhhHHHHHHHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeecCCCCCCCCCC
Q 017885          187 VAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKG  266 (364)
Q Consensus       187 ~i~GllD~~a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~s~~~~s~~~  266 (364)
                      .+|+..=...+.+.+.+..+..+.-.+.. |.-+..+++++...++++++..||.+......|+.++......+.....+
T Consensus         3 svPa~~~~~s~~l~~v~l~~~~~~~~~~~-~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g   81 (222)
T TIGR00803         3 SVPIHIIFKQNNLVLIALGNLLAAGKQVT-QLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG   81 (222)
T ss_pred             cccchHHHHhcchHHHHHhcccccceeee-hHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence            45556666677778888887777778888 99999999999999999999999998887777777665432211112234


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017885          267 AGIFWSLLMIVSFLLQAADTVLKEVIFLD  295 (364)
Q Consensus       267 ~~ll~~lL~ils~i~~Ais~V~eE~~fk~  295 (364)
                      +.+.+..+.+.++...+...+|+|+.+|+
T Consensus        82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~  110 (222)
T TIGR00803        82 NPVVGLSAVLSALLSSGFAGVYFEKILKD  110 (222)
T ss_pred             cHHHHHHHHHHHHHHHhhhHHHHHHcccC
Confidence            66777788889999999999999998774

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=96.75  E-value=0.004  Score=62.67  Aligned_cols=68  Identities=12%  Similarity=0.188  Sum_probs=59.1

Q ss_pred             hhHHHHHHHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeec
Q 017885          189 VGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS  256 (364)
Q Consensus       189 ~GllD~~a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s  256 (364)
                      .|+.-.++..+.+.+..+.+++...+..-..+++++++++++|+++++..|++|++++++|+.++..+
T Consensus       262 ~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~  329 (358)
T PLN00411        262 MAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWG  329 (358)
T ss_pred             HHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence            34444556666667778999999999999999999999999999999999999999999999987654

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=96.67  E-value=0.0018  Score=54.63  Aligned_cols=64  Identities=13%  Similarity=0.048  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEe
Q 017885          191 LLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITV  254 (364)
Q Consensus       191 llD~~a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~  254 (364)
                      ++-..+.++...+....|.+....+-+..+.++++++++++|+|.+..|++|+.++++|+++++
T Consensus        45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            3345566777777788999988777779999999999999999999999999999999998764

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=96.65  E-value=0.011  Score=57.21  Aligned_cols=70  Identities=17%  Similarity=0.113  Sum_probs=60.6

Q ss_pred             ehhhHHHHHHHH-HHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeec
Q 017885          187 VAVGLLEALAAA-TGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS  256 (364)
Q Consensus       187 ~i~GllD~~a~~-L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s  256 (364)
                      +.+|++-+...+ +.+.+.++++++...++....++++.++++++++++++..|++|+.+++.|++.....
T Consensus       212 l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~  282 (293)
T PRK10532        212 LAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT  282 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence            467777654444 6688888999999999999999999999999999999999999999999888876543

>PRK11689 aromatic amino acid exporter; Provisional

Probab=96.55  E-value=0.009  Score=57.87  Aligned_cols=71  Identities=11%  Similarity=0.005  Sum_probs=62.4

Q ss_pred             eehhhHHHHHHHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeec
Q 017885          186 FVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS  256 (364)
Q Consensus       186 f~i~GllD~~a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s  256 (364)
                      .+..|+.-.++..+.+.+..+++++...++.-..+++++++++++|+++++..|++|++++++|+.+....
T Consensus       218 l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~  288 (295)
T PRK11689        218 LLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLA  288 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence            34556666777888889999999999999999999999999999999999999999999999998776543

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=96.45  E-value=0.01  Score=57.80  Aligned_cols=136  Identities=19%  Similarity=0.183  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHhCCCCChHHHHHHHHHhHHHHHHHHHHHHHHhcCCcchh---hhcCCC--cceehhh
Q 017885          116 EIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDE---MLSMPK--APFVAVG  190 (364)
Q Consensus       116 ~v~il~v~lvi~G~~N~V~~Kl~~~~~~~yp~fl~q~~t~~yi~v~f~il~~r~~~~~i~~e---~~~~p~--~~f~i~G  190 (364)
                      -++++++.+ ++.+...+..|...++.+..++-.....++.-++..+....... .++..+.   ..+-|.  ...++.+
T Consensus       155 G~~ll~~sl-~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~-~~~~~~~~~f~~~~p~~~~~l~~~s  232 (303)
T PF08449_consen  155 GIILLLLSL-LLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLP-TGEFRSAIRFISAHPSVLLYLLLFS  232 (303)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH-hhHhhHHHHHHHHhHHHHHHHHHHH
Confidence            344444444 44555666667776666666654444443222222222221100 1110000   011111  2345567


Q ss_pred             HHHHHHHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEE
Q 017885          191 LLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIIT  253 (364)
Q Consensus       191 llD~~a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv  253 (364)
                      ++-.++....+.-....++....+....--++|+++|+++.+++++..||+|+++++.|+.+-
T Consensus       233 ~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~  295 (303)
T PF08449_consen  233 LTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLY  295 (303)
T ss_pred             HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHH
Confidence            777777777776666888888899999999999999999999999999999999999998763

; GO: 0055085 transmembrane transport

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=96.11  E-value=0.019  Score=55.48  Aligned_cols=69  Identities=12%  Similarity=0.026  Sum_probs=59.3

Q ss_pred             eehhhHH-HHHHHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEe
Q 017885          186 FVAVGLL-EALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITV  254 (364)
Q Consensus       186 f~i~Gll-D~~a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~  254 (364)
                      .+.+|++ -..+..+.+.+.++.+++...++.-..+++++++++++++++++..|++|+.++++|+.+..
T Consensus       215 i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~  284 (292)
T PRK11272        215 LGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVT  284 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence            3445655 45666677788889999999999999999999999999999999999999999999987743

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=95.91  E-value=0.028  Score=54.62  Aligned_cols=72  Identities=19%  Similarity=0.140  Sum_probs=64.8

Q ss_pred             cceehhhHHHHHHHHHHHHHhh-hccccHHHHhcchhHHHHHHHHHHHhcCccccccc----chhhheeeeeeEEee
Q 017885          184 APFVAVGLLEALAAATGMAAGA-ILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQL----FGCFLVGIGVIITVA  255 (364)
Q Consensus       184 ~~f~i~GllD~~a~~L~~ia~~-yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~----lGv~ivliGvivv~~  255 (364)
                      ++-++.|++-..+..+.+.+.+ +.+.+...++.+.-++.+.+++++++|++.+..|+    +|+++++.|+++.+.
T Consensus       212 ~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       212 LLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence            4455689888888888889999 99999999999999999999999999999999999    999999999887654

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=95.87  E-value=0.041  Score=51.20  Aligned_cols=70  Identities=27%  Similarity=0.385  Sum_probs=62.0

Q ss_pred             ceehhhHHHH-HHHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEe
Q 017885          185 PFVAVGLLEA-LAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITV  254 (364)
Q Consensus       185 ~f~i~GllD~-~a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~  254 (364)
                      .+...|++.. ++.++.+.+....+++...++.-..+++++++++++++++++..+++|+.+++.|+++..
T Consensus       216 ~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~  286 (292)
T COG0697         216 LLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLAS  286 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Confidence            3566777777 588888999999999999999999999999999999999999999999999999887654

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.60  E-value=0.02  Score=56.87  Aligned_cols=72  Identities=19%  Similarity=0.327  Sum_probs=62.1

Q ss_pred             eehhhHHH-HHHHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeecC
Q 017885          186 FVAVGLLE-ALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASG  257 (364)
Q Consensus       186 f~i~GllD-~~a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~  257 (364)
                      ....|++- .++...-|.|+.+-|.++..-|....++.+++++..|||+|.+..-.+||+++++|-.+.+.-.
T Consensus        66 ~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ha  138 (335)
T KOG2922|consen   66 LWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHA  138 (335)
T ss_pred             HHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEec
Confidence            44555543 3466677788889999999999999999999999999999999999999999999998888744

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=95.54  E-value=0.071  Score=51.66  Aligned_cols=70  Identities=16%  Similarity=0.228  Sum_probs=62.9

Q ss_pred             ehhhHHHHHHHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeec
Q 017885          187 VAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS  256 (364)
Q Consensus       187 ~i~GllD~~a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s  256 (364)
                      +..|.....+..+.+.+..+.+++...++.-..++++.++++++++++++..|++|+.++++|+.+...+
T Consensus       217 ~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~  286 (296)
T PRK15430        217 IAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD  286 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3456678888899999999999999999999999999999999999999999999999998888776654

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=95.26  E-value=0.08  Score=52.89  Aligned_cols=62  Identities=11%  Similarity=0.062  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHH----HHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeE
Q 017885          191 LLEALAAATGM----AAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVII  252 (364)
Q Consensus       191 llD~~a~~L~~----ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGviv  252 (364)
                      ++..+..++..    .+..++++...++.+..-.+++.++|+++++++.+..|++|++++++|+++
T Consensus       280 ~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~l  345 (350)
T PTZ00343        280 FFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALL  345 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHH
Confidence            33444444444    577799999999999999999999999999999999999999999999865

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=95.06  E-value=0.16  Score=47.80  Aligned_cols=97  Identities=16%  Similarity=0.154  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeecCCCCCCCCCCcchH
Q 017885          191 LLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIF  270 (364)
Q Consensus       191 llD~~a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~s~~~~s~~~~~ll  270 (364)
                      .+=..++++-..|+...+++...-+.+.---|+.+++++.||.|+...+++.+.+.+.|+++....|...     ..+++
T Consensus        61 i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~-----a~e~i  135 (290)
T KOG4314|consen   61 IFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEH-----ADEII  135 (290)
T ss_pred             EEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchh-----hhhhh
Confidence            3345589999999999999999999999999999999999999999999999999999999988776432     45688


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 017885          271 WSLLMIVSFLLQAADTVLKEVI  292 (364)
Q Consensus       271 ~~lL~ils~i~~Ais~V~eE~~  292 (364)
                      |+...+.|+...|+--|.=+++
T Consensus       136 Gi~~AV~SA~~aAlYKV~FK~~  157 (290)
T KOG4314|consen  136 GIACAVGSAFMAALYKVLFKMF  157 (290)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Confidence            8887788877777655554443

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=94.97  E-value=0.13  Score=49.92  Aligned_cols=71  Identities=15%  Similarity=0.140  Sum_probs=57.9

Q ss_pred             eehhhHHHHH-HHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeec
Q 017885          186 FVAVGLLEAL-AAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS  256 (364)
Q Consensus       186 f~i~GllD~~-a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s  256 (364)
                      .+.+|++-.. +..+.+.+..+.++....++.-..+++++++++++|+++++..|++|..++++|+.+...+
T Consensus       217 l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~  288 (299)
T PRK11453        217 LMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG  288 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence            4556655544 4445556667889988899999999999999999999999999999999999999876544

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=94.97  E-value=0.025  Score=48.32  Aligned_cols=71  Identities=14%  Similarity=0.065  Sum_probs=62.8

Q ss_pred             cceehhhHHHHHHHHHHHHHhhhccccHHH-HhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEe
Q 017885          184 APFVAVGLLEALAAATGMAAGAILSGASIP-ILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITV  254 (364)
Q Consensus       184 ~~f~i~GllD~~a~~L~~ia~~yts~s~~~-mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~  254 (364)
                      |+|+++=+++..+..+-+..+...+.|+.. +-+.....||++.++++-++..+...++|+.+++.|+.+++
T Consensus        42 ~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lcv  113 (113)
T PF10639_consen   42 PKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALCV  113 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeeeC
Confidence            668888889999999999999999999885 55899999999999877777778889999999999998863

Many members are annotated as potential transmembrane proteins.

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=94.85  E-value=0.13  Score=44.74  Aligned_cols=115  Identities=15%  Similarity=0.085  Sum_probs=72.7

Q ss_pred             HHHHHHHhhhhHHHHHHHHhCCCCChHHHHHHHHHhHHHHHHHHHHHHHHhcCCcchhhhcCCCcceehhh-HHHHHHHH
Q 017885          120 AAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVG-LLEALAAA  198 (364)
Q Consensus       120 l~v~lvi~G~~N~V~~Kl~~~~~~~yp~fl~q~~t~~yi~v~f~il~~r~~~~~i~~e~~~~p~~~f~i~G-llD~~a~~  198 (364)
                      ++++-+++++.-.++.|+..++.++-+.....+      ...+     .           ...+..+++.| ++-.++.+
T Consensus         6 ~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~~------~~~~-----~-----------~~~p~~~i~lgl~~~~la~~   63 (129)
T PRK02971          6 WGLASVLLASVAQLSLKWGMSRLPLLSHAWDFI------AALL-----A-----------FGLALRAVLLGLAGYALSML   63 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCccchhHHH------HHHH-----H-----------HhccHHHHHHHHHHHHHHHH
Confidence            445555566777888999887765522211100      0000     0           00011133334 34555666


Q ss_pred             HHHHHhhhccccHHHHhcchhHHHHHHHHHH--HhcCcccccccchhhheeeeeeEEeec
Q 017885          199 TGMAAGAILSGASIPILSQTFLVWQILLSII--FLGRRYRVNQLFGCFLVGIGVIITVAS  256 (364)
Q Consensus       199 L~~ia~~yts~s~~~mL~qs~IpfT~llS~i--FLkrRy~~~q~lGv~ivliGvivv~~s  256 (364)
                      +-..++...+.+...-+......++++.++.  |++++.+..|++|+.++++|++++..+
T Consensus        64 ~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~  123 (129)
T PRK02971         64 CWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP  123 (129)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence            6667777788777766655555677777774  899999999999999999999997654

>TIGR00803 nst UDP-galactose transporter

Probab=94.76  E-value=0.16  Score=46.93  Aligned_cols=67  Identities=13%  Similarity=0.155  Sum_probs=60.1

Q ss_pred             eehhhHHHHHHHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeE
Q 017885          186 FVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVII  252 (364)
Q Consensus       186 f~i~GllD~~a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGviv  252 (364)
                      ...+.++.+.++.+...-..|.+.....+....-+.++.++|+++.+++++..+|+|+.+|+.|+.+
T Consensus       155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            3456677888888888888899999999999999999999999999999999999999999999865

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=94.65  E-value=0.076  Score=51.29  Aligned_cols=57  Identities=21%  Similarity=0.225  Sum_probs=50.1

Q ss_pred             HHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEee
Q 017885          199 TGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVA  255 (364)
Q Consensus       199 L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~  255 (364)
                      +.+.+..+++++...++...-.++++++++++++++.+..|++|..++++|+.+...
T Consensus       237 ~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~  293 (302)
T TIGR00817       237 VAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR  293 (302)
T ss_pred             HHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence            444577799999999998888888889999999999999999999999999877543

specificities overlap.

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=93.93  E-value=0.043  Score=47.32  Aligned_cols=73  Identities=10%  Similarity=0.132  Sum_probs=59.1

Q ss_pred             ceehhhHHHHHHHHHHHHHhhhccccHH-HHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeecC
Q 017885          185 PFVAVGLLEALAAATGMAAGAILSGASI-PILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASG  257 (364)
Q Consensus       185 ~f~i~GllD~~a~~L~~ia~~yts~s~~-~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~  257 (364)
                      ++++.-++=.++-++...+..+.|.++. .+..+.-+..+.+++++|++++.+..+++|+.++++|++++-..+
T Consensus        32 ~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         32 GFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            3455555566667777777778887765 666788999999999999999999999999999999998876543

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=90.78  E-value=0.16  Score=43.00  Aligned_cols=61  Identities=23%  Similarity=0.216  Sum_probs=47.7

Q ss_pred             HHHHHHHHhhhccccHH-HHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeec
Q 017885          196 AAATGMAAGAILSGASI-PILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS  256 (364)
Q Consensus       196 a~~L~~ia~~yts~s~~-~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s  256 (364)
                      +-++...+....|.++. .+..+.-+..+.++++++++++.+..+++|..++++|++.+-..
T Consensus        43 sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~  104 (110)
T PRK09541         43 SFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL  104 (110)
T ss_pred             HHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            33334444555665554 66677888889999999999999999999999999999987544

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=90.70  E-value=0.16  Score=42.99  Aligned_cols=68  Identities=12%  Similarity=0.021  Sum_probs=56.4

Q ss_pred             eehhhHHHHHHHHHHHHHhhhccccHH-HHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEE
Q 017885          186 FVAVGLLEALAAATGMAAGAILSGASI-PILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIIT  253 (364)
Q Consensus       186 f~i~GllD~~a~~L~~ia~~yts~s~~-~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv  253 (364)
                      .+++-.+=.++-++.-.+..+.|.++. .+-.+.-+..+.+.+++|+|++.+..|++|+.++++|++.+
T Consensus        38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            344455566677777777778887765 78888889999999999999999999999999999998764

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=89.91  E-value=0.95  Score=44.25  Aligned_cols=69  Identities=22%  Similarity=0.200  Sum_probs=58.0

Q ss_pred             cceehhhHHHHHHHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCccccccc----chhhheeeeeeE
Q 017885          184 APFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQL----FGCFLVGIGVII  252 (364)
Q Consensus       184 ~~f~i~GllD~~a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~----lGv~ivliGviv  252 (364)
                      |+=++-|++-..++..++++.+..-....-.|.|..++.+.+...++||++=+++|+    +|++++++|.++
T Consensus       196 ~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  196 WKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             HHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            556788999999999999999999999999999999999999999999976666655    466666666543

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK11431 multidrug efflux system protein; Provisional

Probab=88.15  E-value=0.38  Score=40.50  Aligned_cols=67  Identities=16%  Similarity=0.049  Sum_probs=53.7

Q ss_pred             hhhHHHHHHHHHHHHHhhhccccHH-HHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEe
Q 017885          188 AVGLLEALAAATGMAAGAILSGASI-PILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITV  254 (364)
Q Consensus       188 i~GllD~~a~~L~~ia~~yts~s~~-~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~  254 (364)
                      +.-.+=..+-++...+....|.++. .+-.+.-+..+.+.+++|.|++.+..|++|+.++++|++..-
T Consensus        34 ~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         34 ITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence            3344445566666666677776654 788888899999999999999999999999999999998753

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=88.01  E-value=0.51  Score=39.95  Aligned_cols=71  Identities=18%  Similarity=0.099  Sum_probs=58.3

Q ss_pred             cceehhhHHHHHHHHHHHHHhhhccccHH-HHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEe
Q 017885          184 APFVAVGLLEALAAATGMAAGAILSGASI-PILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITV  254 (364)
Q Consensus       184 ~~f~i~GllD~~a~~L~~ia~~yts~s~~-~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~  254 (364)
                      ++.+++-.+=..+-++.-.+..+.|.++. .+-.+.-+.-+.+.+++|++++.+..+++|..++++|++..-
T Consensus        31 ~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk  102 (106)
T COG2076          31 WPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLK  102 (106)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhh
Confidence            44555556666666777777778887765 888999999999999999999999999999999999987643

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=87.70  E-value=11  Score=36.99  Aligned_cols=147  Identities=16%  Similarity=0.109  Sum_probs=96.3

Q ss_pred             CCCChHHHHHHHHHhHHHHHHHHHHHHHHhcCCcchhhhcCCCcceehhhHHHHHHHHHHHHHhhhccccHHH-Hhcchh
Q 017885          141 PLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIP-ILSQTF  219 (364)
Q Consensus       141 ~~~~yp~fl~q~~t~~yi~v~f~il~~r~~~~~i~~e~~~~p~~~f~i~GllD~~a~~L~~ia~~yts~s~~~-mL~qs~  219 (364)
                      +++-+|.-+..-++++-+.+-....+  ..+...+.+...+  +--++-|++=++++..++.+..+...|... +=.+.-
T Consensus         7 k~gG~~~~Q~lG~t~Gali~alv~~~--~~~p~~~~~~~~~--~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~Q   82 (269)
T PF06800_consen    7 KIGGKPANQILGTTIGALIFALVVFL--FRQPAFSMSGTSF--IVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQ   82 (269)
T ss_pred             eeCCcHHHHHHHHHHHHHHHHHHHHH--HhCCCcchHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHH
Confidence            45566766666666665544432222  2222222101111  112445889999999999999999888774 444777


Q ss_pred             HHHHHHHHHHHhcCcccccccc----hhhheeeeeeEEeecCCCCCCC-CCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 017885          220 LVWQILLSIIFLGRRYRVNQLF----GCFLVGIGVIITVASGSNPGHS-LKGAGIFWSLLMIVSFLLQAADTVLKEV  291 (364)
Q Consensus       220 IpfT~llS~iFLkrRy~~~q~l----Gv~ivliGvivv~~s~s~~~~s-~~~~~ll~~lL~ils~i~~Ais~V~eE~  291 (364)
                      ++.+.++..+++++--+..+++    +++++++|+.+....+.+++.+ +..+..-+.+..+++++-|-.=.+.-+.
T Consensus        83 Lvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~  159 (269)
T PF06800_consen   83 LVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKA  159 (269)
T ss_pred             HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence            8999999999999866666554    7778889998888876544332 2345566788888888888776666544

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=87.09  E-value=2.2  Score=40.33  Aligned_cols=156  Identities=15%  Similarity=0.149  Sum_probs=103.7

Q ss_pred             eeeeccccccccchhHHHHHHHHHHHhhhhHHHHHHHHhC--CCCChHHHHHHHHHhHHHHHHHHHHHHHHhcCCcchh-
Q 017885          101 TVEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALV--PLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDE-  177 (364)
Q Consensus       101 ~~~~~~~~~~~~~~~~v~il~v~lvi~G~~N~V~~Kl~~~--~~~~yp~fl~q~~t~~yi~v~f~il~~r~~~~~i~~e-  177 (364)
                      ++|..-..+|++..+-=+.+++.-..+...-.|++|+..-  .+++-..|.+.+-++-.|..+|+-+.. +..+....+ 
T Consensus       120 iVmiay~DN~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL-~~T~VE~~qs  198 (290)
T KOG4314|consen  120 IVMIAYADNEHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALIL-AFTGVEHLQS  198 (290)
T ss_pred             EEEEEeccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHH-HHhchHHHHH
Confidence            4444334556655444444444444455555666666532  467766666655555555555544332 233221111 


Q ss_pred             hhcCCCcceehhhHHHHHHHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeecC
Q 017885          178 MLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASG  257 (364)
Q Consensus       178 ~~~~p~~~f~i~GllD~~a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~  257 (364)
                      --..||-.+.=++.+-+.-+++..+|...+.+-+..+=.-..||-....-.+|-+-..+...+.|..++.+|.++...|.
T Consensus       199 FA~~PWG~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~  278 (290)
T KOG4314|consen  199 FAAAPWGCLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPE  278 (290)
T ss_pred             HhhCCchhhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheeccc
Confidence            12346666777888899999999999999988888776666788888888888888888999999999999999988884

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=86.55  E-value=1.4  Score=35.87  Aligned_cols=56  Identities=16%  Similarity=0.103  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHhhhccccHH-HHhcchhHHHHHHHHHHHhcCcccccccchhhhe
Q 017885          191 LLEALAAATGMAAGAILSGASI-PILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLV  246 (364)
Q Consensus       191 llD~~a~~L~~ia~~yts~s~~-~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~iv  246 (364)
                      .+=..+-++...+..+.|.++. .+..+.-+..+.+.+.+|.|++.+..|++|+.++
T Consensus        37 ~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   37 VGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            3455566677777778888876 8889999999999999999999999999998763

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=85.27  E-value=4.9  Score=40.44  Aligned_cols=64  Identities=14%  Similarity=0.148  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeecC
Q 017885          194 ALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASG  257 (364)
Q Consensus       194 ~~a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~  257 (364)
                      ..-..++-+...++++....+=--+..|+++++.+++-|.+++...++|.+++++|+++-....
T Consensus       244 f~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~  307 (334)
T PF06027_consen  244 FLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE  307 (334)
T ss_pred             HHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence            3334455555667888877777778899999999999999999999999999999999987643

Some of the sequences in this family are annotated as putative membrane proteins.

>PF12398 DUF3660: Receptor serine/threonine kinase ; InterPro: IPR022126 This domain family is found in eukaryotes, and is approximately 40 amino acids in length

Probab=84.77  E-value=0.64  Score=32.99  Aligned_cols=30  Identities=27%  Similarity=0.226  Sum_probs=24.0

Q ss_pred             eeeccccccCCCceeEEecCCccccccCCC
Q 017885           33 YLRDHHANQRLPTTLLFRSSKRNYYHNNSN   62 (364)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   62 (364)
                      ||..+++||-||.-=++-||||++|+|+..
T Consensus         3 ~i~~~~RnQ~llmN~~v~sskr~~s~Enk~   32 (42)
T PF12398_consen    3 PIVNRQRNQDLLMNGMVLSSKRQLSGENKT   32 (42)
T ss_pred             ccccccccccccccceEEeccccccccCcc
Confidence            455667899998777788999999998754

The family is found in association with PF00954 from PFAM, PF01453 from PFAM, PF00069 from PFAM, PF08276 from PFAM. There is a conserved ELPL sequence motif. ; GO: 0004674 protein serine/threonine kinase activity

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=84.24  E-value=3.2  Score=35.43  Aligned_cols=57  Identities=18%  Similarity=0.171  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHhhhcc
Q 017885          271 WSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQALFICLLLPFL  328 (364)
Q Consensus       271 ~~lL~ils~i~~Ais~V~eE~~fk~~~~~lk~~ld~~~v~~w~~~fq~l~~~lllP~~  328 (364)
                      |.++.++|.+++|+.+|+.|+.+++.. ..+.+.|++.+..+.+...+++.++..++.
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~-~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~   57 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVS-SNSKKLNPLNLLYYNSPISFIILLPLAFLL   57 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhccc-ccccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346889999999999999999988521 112359999999999999887776654443

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=83.52  E-value=0.52  Score=45.59  Aligned_cols=74  Identities=16%  Similarity=0.187  Sum_probs=63.0

Q ss_pred             cceehhhHHHHHHHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeecC
Q 017885          184 APFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASG  257 (364)
Q Consensus       184 ~~f~i~GllD~~a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~  257 (364)
                      |.+..+|++.+++..+.+.--.+-.+-.-.+...+-=-||.+.|+++.+...+..||+|..+|+.|+.+...-|
T Consensus       242 ~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~G  315 (337)
T KOG1580|consen  242 WDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDG  315 (337)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcC
Confidence            67888999999999999888776666555556666678999999999999999999999999999998877654

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=83.08  E-value=13  Score=35.59  Aligned_cols=60  Identities=18%  Similarity=0.156  Sum_probs=53.0

Q ss_pred             ehhhHHHHHHHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhhe
Q 017885          187 VAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLV  246 (364)
Q Consensus       187 ~i~GllD~~a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~iv  246 (364)
                      .++=++-+.++++.-+-..|.+.-.=..-....+..|.++|+++.+.+++..-.+|+.+|
T Consensus       185 ~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V  244 (244)
T PF04142_consen  185 WIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV  244 (244)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence            445568888999988888899988888999999999999999999999999999998765

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=80.71  E-value=3.1  Score=41.08  Aligned_cols=70  Identities=19%  Similarity=0.046  Sum_probs=53.7

Q ss_pred             eehhhHHHHHHHHHHHHHhhhccccHHHHhcchh-HHHHHHHHHHHhcCcccccccchhhheeeeeeEEee
Q 017885          186 FVAVGLLEALAAATGMAAGAILSGASIPILSQTF-LVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVA  255 (364)
Q Consensus       186 f~i~GllD~~a~~L~~ia~~yts~s~~~mL~qs~-IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~  255 (364)
                      .+..+.++...|-..++.+..-.-.+-.=|.=.+ +.+.+++..+|||+|+++.||+.+.+..+||.+...
T Consensus        74 ~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~  144 (293)
T COG2962          74 MLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTW  144 (293)
T ss_pred             HHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence            4556788888888888887754444444444444 456667789999999999999999999999988654

>PRK13499 rhamnose-proton symporter; Provisional

Probab=80.39  E-value=8.8  Score=38.86  Aligned_cols=100  Identities=19%  Similarity=0.044  Sum_probs=75.8

Q ss_pred             ehhhHHHHHHHHHHHHHhhhccccHH-HHhcchhHHHHHHHHHHHhcCc-------ccccccchhhheeeeeeEEeecCC
Q 017885          187 VAVGLLEALAAATGMAAGAILSGASI-PILSQTFLVWQILLSIIFLGRR-------YRVNQLFGCFLVGIGVIITVASGS  258 (364)
Q Consensus       187 ~i~GllD~~a~~L~~ia~~yts~s~~-~mL~qs~IpfT~llS~iFLkrR-------y~~~q~lGv~ivliGvivv~~s~s  258 (364)
                      ++-|++=.+++.+.+.+..|...|.. .+-.+...+.+.++-.+++++=       -...-++|++++++|+++....+.
T Consensus        77 ~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~  156 (345)
T PRK13499         77 FLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQ  156 (345)
T ss_pred             HHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence            33488999999999999999999987 4556777888999988887731       123457899999999999888432


Q ss_pred             CCCC------CCCCcchHHHHHHHHHHHHHHHHH
Q 017885          259 NPGH------SLKGAGIFWSLLMIVSFLLQAADT  286 (364)
Q Consensus       259 ~~~~------s~~~~~ll~~lL~ils~i~~Ais~  286 (364)
                      ..++      .++.+.-.+.++.++|.+.+++=+
T Consensus       157 ~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~  190 (345)
T PRK13499        157 LKERKMGIKKAEEFNLKKGLILAVMSGIFSACFS  190 (345)
T ss_pred             hcccccccccccccchHhHHHHHHHHHHHHHHHH
Confidence            1111      233566788999999999999888

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	364
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	96.86
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	96.85

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=96.86  E-value=0.00043  Score=59.50  Aligned_cols=74  Identities=22%  Similarity=0.156  Sum_probs=50.9

Q ss_pred             cceehhhHHHHHHHHHHHHHhhhccccHHHHh-cchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeecC
Q 017885          184 APFVAVGLLEALAAATGMAAGAILSGASIPIL-SQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASG  257 (364)
Q Consensus       184 ~~f~i~GllD~~a~~L~~ia~~yts~s~~~mL-~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~  257 (364)
                      +++++..++-.++.++...++.+.|.+....+ .+..++++++++++|++++.+..|++|++++++|++++...+
T Consensus        31 ~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           31 WPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            34455556778888888889899999977655 999999999999999999999999999999999999876543

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=96.85  E-value=0.0005  Score=56.57  Aligned_cols=72  Identities=21%  Similarity=0.142  Sum_probs=60.7

Q ss_pred             eehhhHHHHHHHHHHHHHhhhccccHHHHh-cchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeecC
Q 017885          186 FVAVGLLEALAAATGMAAGAILSGASIPIL-SQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASG  257 (364)
Q Consensus       186 f~i~GllD~~a~~L~~ia~~yts~s~~~mL-~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~  257 (364)
                      .+...++-.++.++...++.+.|.+...-+ ++..+.++.+++++|+|++.+..|++|+.++++|++++...+
T Consensus        33 ~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            334445567777788888889999988655 999999999999999999999999999999999999876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00