Citrus Sinensis ID: 017898


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360----
MKMEVQSVCRGLQLPKFKSSNCGFLSHQFVSPSASQFGSRSQSIRFGNAYKFLGNTFPNLKHKIEGYSAWSSKRGAILCASNSGSDTKLGFPSGENSSLPVAIFNGPEPFRGKSGSVSFCGLTHQLVEEGKLMSAPFQEDKGSFLWILAPVVLISSLILPQMFLGNVIEDFIKDNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQFSPKRWGLITGLRGYLTSAFFTTGLKVVAPLFAVYVTWPVLRLPALVAVLPFLVGCAAQLAFETNLDKRGSSCWPLIPIIFEVYRLYQLSKAANFIERLMFSMKDLPRSPELLERGSAMVSMVVIFQILGVVCLWSLLTFLLRLFPSRPVAENY
cccccccEEccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccEEEEHHHHHHHHHccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
ccEEEEEEccccccccccccccHHHccEEEccccccccccccEEEEcccHHHccccccccHHHcccccccccccEEEEEEEcccccccccccccccccccccccccccccccccEEEEEcccccccccccEEEccccccccccEEEEHcHHHHHHHHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
mkmevqsvcrglqlpkfkssncgflshqfvspsasqfgsrsqsirfgnaykflgntfpnlkhkiegysawsskrGAILcasnsgsdtklgfpsgensslpvaifngpepfrgksgsvsfcgLTHQLVEegklmsapfqedkgsflWILAPVVLISSLILPQMFLGNVIEDFIKDNLLMEIVSSLTFESMFYVGLAIFLRITdrvqrpylqfspkrwgliTGLRGYLTSAFFTTGLKVVAPLFAVYVtwpvlrlpALVAVLPFLVGCAAQLAFETnldkrgsscwpliPIIFEVYRLYQLSKAANFIERLMFSmkdlprspellerGSAMVSMVVIFQILGVVCLWSLLTFLLRlfpsrpvaeny
MKMEVQSVCRGLQLPKFKSSNCGFLSHQFVSPSASQFGSRSQSIRFGNAYKFLGNTFPNLKHKIEGYSAWSSKRGAILCASNSGSDTKLGFPSGENSSLPVAIFNGPEPFRGKSGSVSFCGLTHQLVEEGKLMSAPFQEDKGSFLWILAPVVLISSLILPQMFLGNVIEDFIKDNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQFSPKRWGLITGLRGYLTSAFFTTGLKVVAPLFAVYVTWPVLRLPALVAVLPFLVGCAAQLAFETnldkrgsscwPLIPIIFEVYRLYQLSKAANFIERLMFSMKDLPRSPELLERGSAMVSMVVIFQILGVVCLWSLLTFllrlfpsrpvaeny
MKMEVQSVCRGLQLPKFKSSNCGFLSHQFVSPSASQFGSRSQSIRFGNAYKFLGNTFPNLKHKIEGYSAWSSKRGAILCASNSGSDTKLGFPSGENSSLPVAIFNGPEPFRGKSGSVSFCGLTHQLVEEGKLMSAPFQEDKGSFLWILAPVVLISSLILPQMFLGNVIEDFIKDNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQFSPKRWGLITGLRGYLTSAFFTTGLKVVAPLFAVYVTWpvlrlpalvavlpflvGCAAQLAFETNLDKRGSSCWPLIPIIFEVYRLYQLSKAANFIERLMFSMKDLPRSPELLERGSAMVSMVVIFQILGVVClwslltfllrlfpsrpVAENY
********CRGLQLPKFKSSNCGFLSHQFV************SIRFGNAYKFLGNTFPNLKHKIEGYSAWSSKRGAILCA*********************AIF**********GSVSFCGLTHQLVEEGKLMSAPFQEDKGSFLWILAPVVLISSLILPQMFLGNVIEDFIKDNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQFSPKRWGLITGLRGYLTSAFFTTGLKVVAPLFAVYVTWPVLRLPALVAVLPFLVGCAAQLAFETNLDKRGSSCWPLIPIIFEVYRLYQLSKAANFIERLMFSMKDLP***ELLERGSAMVSMVVIFQILGVVCLWSLLTFLLRLFP********
*********RGLQL**********************FGS*SQSIRFGNAY*F***TFPNL**************************************************RGKSGSVSFC**********************SFLWILAPVVLISSLILPQMFLGNVIEDFIKDNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRP**********LITGLRGYLTSAFFTTGLKVVAPLFAVYVTWPVLRLPALVAVLPFLVGCAAQLAFETNLDKRGSSCWPLIPIIFEVYRLYQLSKAANFIERLMFSMKDLPRSPELLERGSAMVSMVVIFQILGVVCLWSLLTFLLRLFP********
********CRGLQLPKFKSSNCGFLSHQFV***********QSIRFGNAYKFLGNTFPNLKHKIEGYSAWSSKRGAILCASNSGSDTKLGFPSGENSSLPVAIFNGPEPFRGKSGSVSFCGLTHQLVEEGKLMSAPFQEDKGSFLWILAPVVLISSLILPQMFLGNVIEDFIKDNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQFSPKRWGLITGLRGYLTSAFFTTGLKVVAPLFAVYVTWPVLRLPALVAVLPFLVGCAAQLAFETNLDKRGSSCWPLIPIIFEVYRLYQLSKAANFIERLMFSMKDLPRSPELLERGSAMVSMVVIFQILGVVCLWSLLTFLLRLFPSRPVAENY
*KMEVQSVCRGLQLPKFKSSNCGFLSHQFVSPSASQFGSRSQSIRFGNAYKFLGNTFPNLKHKIEGYSAWSSKRGAILCASN**************SSLPVAIFNGPEPFRGKSGSVSFCGLTHQLVEEGKLMSAPFQEDKGSFLWILAPVVLISSLILPQMFLGNVIEDFIKDNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQFSPKRWGLITGLRGYLTSAFFTTGLKVVAPLFAVYVTWPVLRLPALVAVLPFLVGCAAQLAFETNLDKRGSSCWPLIPIIFEVYRLYQLSKAANFIERLMFSMKDLPRSPELLERGSAMVSMVVIFQILGVVCLWSLLTFLLRLFPSRPV****
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MKMEVQSVCRGLQLPKFKSSNCGFLSHQFVSPSASQFGSRSQSIRFGNAYKFLGNTFPNLKHKIEGYSAWSSKRGAILCASNSGSDTKLGFPSGENSSLPVAIFNGPEPFRGKSGSVSFCGLTHQLVEEGKLMSAPFQEDKGSFLWILAPVVLISSLILPQMFLGNVIEDFIKDNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQFSPKRWGLITGLRGYLTSAFFTTGLKVVAPLFAVYVTWPVLRLPALVAVLPFLVGCAAQLAFETNLDKRGSSCWPLIPIIFEVYRLYQLSKAANFIERLMFSMKDLPRSPELLERGSAMVSMVVIFQILGVVCLWSLLTFLLRLFPSRPVAENY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query364
225458432355 PREDICTED: uncharacterized protein LOC10 0.975 1.0 0.613 1e-118
255538514339 conserved hypothetical protein [Ricinus 0.925 0.994 0.612 1e-116
356519084356 PREDICTED: uncharacterized protein LOC10 0.972 0.994 0.565 1e-111
356510304356 PREDICTED: uncharacterized protein LOC10 0.967 0.988 0.560 1e-111
449476766345 PREDICTED: uncharacterized LOC101207359 0.818 0.863 0.657 1e-110
449460131345 PREDICTED: uncharacterized protein LOC10 0.818 0.863 0.654 1e-110
255647675356 unknown [Glycine max] 0.972 0.994 0.552 1e-107
15221197340 uncharacterized protein [Arabidopsis tha 0.818 0.876 0.621 1e-105
297847108331 hypothetical protein ARALYDRAFT_473986 [ 0.909 1.0 0.558 1e-105
8778686343 T1N15.7 [Arabidopsis thaliana] 0.818 0.868 0.618 1e-104
>gi|225458432|ref|XP_002283812.1| PREDICTED: uncharacterized protein LOC100245429 [Vitis vinifera] gi|302142414|emb|CBI19617.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/362 (61%), Positives = 269/362 (74%), Gaps = 7/362 (1%)

Query: 3   MEVQSVCRGLQLPKFKSSNCGFLSHQFVSPSASQFGSRSQSIRFGNAYKFLGNTFPNLKH 62
           ME+QS+   L  P  +      LSH+ VS    ++  + Q  RF    K   +  P LK 
Sbjct: 1   MELQSISCWLPSPDMRLCIHRPLSHRIVSTGHVRW--KDQRFRFEKVLK--SSLMPGLKK 56

Query: 63  KIEGYSAWSSKRGAILCASNSGSDTKLGFPSGENSSLPVAIFNGPEPFRGKSGSVSFCGL 122
           +    S  S  RGA LC+ NS SD KL +   E +S+    F+G EPFRGKSGSVSF GL
Sbjct: 57  EC---SLSSFGRGATLCSLNSNSDAKLKYSGREITSVSGNGFDGVEPFRGKSGSVSFHGL 113

Query: 123 THQLVEEGKLMSAPFQEDKGSFLWILAPVVLISSLILPQMFLGNVIEDFIKDNLLMEIVS 182
           THQ VEE KL S+PF+E  GSFLW+LAPV LISSL+LPQ FL + IE  +KD +L EIV+
Sbjct: 114 THQRVEESKLASSPFKEGTGSFLWVLAPVALISSLVLPQFFLDSAIEAILKDEVLAEIVA 173

Query: 183 SLTFESMFYVGLAIFLRITDRVQRPYLQFSPKRWGLITGLRGYLTSAFFTTGLKVVAPLF 242
           ++  E+MFY+GLA FL +TD VQRPYLQFSPKRWGLITGL+GYLT+AFFT G K+ AP F
Sbjct: 174 TIFSEAMFYIGLATFLHVTDHVQRPYLQFSPKRWGLITGLKGYLTTAFFTMGFKIFAPFF 233

Query: 243 AVYVTWPVLRLPALVAVLPFLVGCAAQLAFETNLDKRGSSCWPLIPIIFEVYRLYQLSKA 302
           AVYVTWPVL   ALVAV PFLVGCAAQLAFE  L KRGSSCWPL+PIIFEVYRLYQLSKA
Sbjct: 234 AVYVTWPVLGPSALVAVAPFLVGCAAQLAFEMRLSKRGSSCWPLVPIIFEVYRLYQLSKA 293

Query: 303 ANFIERLMFSMKDLPRSPELLERGSAMVSMVVIFQILGVVCLWSLLTFLLRLFPSRPVAE 362
           A+F++ L+ +MK+ P +P+++ER  A+V+MVV FQ+LG+VCLWSL+TFL+RLFPSRPVAE
Sbjct: 294 AHFMDILILAMKEAPVTPDIVERSGALVAMVVTFQVLGLVCLWSLMTFLMRLFPSRPVAE 353

Query: 363 NY 364
           NY
Sbjct: 354 NY 355




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538514|ref|XP_002510322.1| conserved hypothetical protein [Ricinus communis] gi|223551023|gb|EEF52509.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356519084|ref|XP_003528204.1| PREDICTED: uncharacterized protein LOC100780682 [Glycine max] Back     alignment and taxonomy information
>gi|356510304|ref|XP_003523879.1| PREDICTED: uncharacterized protein LOC100805065 [Glycine max] Back     alignment and taxonomy information
>gi|449476766|ref|XP_004154828.1| PREDICTED: uncharacterized LOC101207359 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449460131|ref|XP_004147799.1| PREDICTED: uncharacterized protein LOC101207359 [Cucumis sativus] Back     alignment and taxonomy information
>gi|255647675|gb|ACU24299.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|15221197|ref|NP_175279.1| uncharacterized protein [Arabidopsis thaliana] gi|56381889|gb|AAV85663.1| At1g48460 [Arabidopsis thaliana] gi|57222220|gb|AAW39017.1| At1g48460 [Arabidopsis thaliana] gi|332194175|gb|AEE32296.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297847108|ref|XP_002891435.1| hypothetical protein ARALYDRAFT_473986 [Arabidopsis lyrata subsp. lyrata] gi|297337277|gb|EFH67694.1| hypothetical protein ARALYDRAFT_473986 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|8778686|gb|AAF79694.1|AC020889_2 T1N15.7 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query364
TAIR|locus:2198070340 AT1G48460 "AT1G48460" [Arabido 0.832 0.891 0.542 1.2e-85
TAIR|locus:2166330366 AT5G63040 "AT5G63040" [Arabido 0.623 0.620 0.294 8.7e-24
TAIR|locus:2198070 AT1G48460 "AT1G48460" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 825 (295.5 bits), Expect = 1.2e-85, Sum P(2) = 1.2e-85
 Identities = 171/315 (54%), Positives = 210/315 (66%)

Query:    55 NTFPNLKHKIEGYSA--WSS---KRGAILCASNSGSDTKLGFPSGENSSLPVAIFNGPEP 109
             +TF   +HK++      W+     R  + C+S S SD++      + S+   A     E 
Sbjct:    33 STFAT-RHKLDSRQTLLWNKPQLSRVRVACSS-SQSDSRPEKKQSDKSNYARA-----EL 85

Query:   110 FRGKSGSVSFCGLTHQLVEEGKLMSAPFQEDKGSFLWILAPVVLISSLILPQMFLGNVIE 169
             FRGKSGSVSF GLTHQLVEE KL+SAPFQE+KGSFLW+LAPVVLISSLILPQ FL  +IE
Sbjct:    86 FRGKSGSVSFNGLTHQLVEESKLVSAPFQEEKGSFLWVLAPVVLISSLILPQFFLSGIIE 145

Query:   170 DFIKDNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQFSPKRWGLITGLRGYLTSA 229
                K++ + EIV+S  FE++FY GLAIFL +TDRVQRPYL FS KRWGLITGLRGYLTSA
Sbjct:   146 ATFKNDTVAEIVTSFCFETVFYAGLAIFLSVTDRVQRPYLDFSSKRWGLITGLRGYLTSA 205

Query:   230 FFTTGLKVVAPLFAVYVTWXXXXXXXXXXXXXXXXGCAAQLAFETNLDKRGSSCWPLIPI 289
             F T GLKVV P+FAVY+TW                GCA Q  FE  L++RGSSCWP++PI
Sbjct:   206 FLTMGLKVVVPVFAVYMTWPALGIDALIAVLPFLVGCAVQRVFEARLERRGSSCWPIVPI 265

Query:   290 IFEVYRLYQLSKAANFIERLMFSMKDLPRSPELLERGSAMVSMVVIFQILGVVCXXXXXX 349
             +FEVYRLYQ+++AA F++RLMF MKD   + E+ ERG A+V +VV  Q L V+C      
Sbjct:   266 VFEVYRLYQVTRAATFVQRLMFMMKDAATTAEITERGVALVGLVVTLQFLAVMCLWSFIT 325

Query:   350 XXXXXXXXXXVAENY 364
                       V ENY
Sbjct:   326 FLMRLFPSRPVGENY 340


GO:0003674 "molecular_function" evidence=ND
GO:0005739 "mitochondrion" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009536 "plastid" evidence=IDA
TAIR|locus:2166330 AT5G63040 "AT5G63040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00014708001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (305 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query364
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 50.6 bits (120), Expect = 5e-07
 Identities = 47/314 (14%), Positives = 85/314 (27%), Gaps = 105/314 (33%)

Query: 103 IFNGPEPFRGKSGSVSFCGLTHQLVEEGKLMSAPFQEDKGSFL--------WILAPVVLI 154
           ++N  + F     +VS      +L +   L+    +  K   +          +A  V +
Sbjct: 119 LYNDNQVFA--KYNVSRLQPYLKLRQ--ALLEL--RPAKNVLIDGVLGSGKTWVALDVCL 172

Query: 155 SSLILPQMF-------LGNVIEDFIKDNLLMEIVSSL--TFESMFYVGLAIFLRITDRVQ 205
           S  +  +M        L N          ++E++  L    +  +         I  R+ 
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSP----ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 206 ------RPYLQFSPKRWGLITGLR----GYLTSAF-------FTTGLKVVA--------- 239
                 R  L+  P    L+  L         +AF        TT  K V          
Sbjct: 229 SIQAELRRLLKSKPYENCLLV-LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 240 -----------------PLFAVYVTWPVLRLPALV-AVLPFLVG-CAAQLAFETNLDKRG 280
                             L   Y+      LP  V    P  +   A  +       + G
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI-------RDG 340

Query: 281 SSCWPLIPIIFEVYRLYQLSKAANFIERLMFSMKDLPRSPELLERGSAMVSMVVIF---- 336
            + W       + ++     K    IE    S+  L   P    +   M   + +F    
Sbjct: 341 LATW-------DNWKHVNCDKLTTIIES---SLNVL--EPAEYRK---MFDRLSVFPPSA 385

Query: 337 ----QILGVVCLWS 346
                +L +  +W 
Sbjct: 386 HIPTILLSL--IWF 397


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00