Citrus Sinensis ID: 017952

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360---
Protein Sequence
MEIPLASLTSSRATTTTSLKLNGGLGRELCVSKKGTVKSGPNQMRSRSNEDIKNSDNSRFTGSVMEVTTFDRGFGQPAASDFPVWDKIGAIVRLSYGIGIYGAMALAGRFICSITGVDSMGGFHPSLDAIVEGLGYAAPPIMALLFILDDEVVKLSPHARAIRDVEDEELRSFFYGMSPWQFVLIVAASSVGEELFYRAAVQGALADIFLRGTDFLTDAQGMASLTGVLPPFVPFAQAFAAVITAALTGSLYYVATSPKDPTYVVAPVLRSRSGREDLKKLFAAWYERRQMKKIYSPLLEGLLALYLGFEWIQTNNILAPIITHGIYSAVILGHGLWKIHDHRRRLHQRIQRLELEGNDSDRK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccEEEEEEccccEEccccccccccccccccccccccccccEEEEEEcccccccccccccHHHHHccEEEEEEEHHHHHHHHHHccEEEEEEcccccccccccHHHHHHccccccHHHHHHHHHccccHHcccccccccccccHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHccccccccHHHHHHHHHHHHHHHcEEEEEEcccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEcccHHHHHHHHHHHHHHccccccHHcHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccEHHHcccccEEEEEEccccEEcccHHHHHccccccccccccccccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccccHHHHHHHHHccHHEEccccHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHEEEcccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcccccHHHHHcHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
meiplasltssrattttslklngglgrelcvskkgtvksgpnqmrsrsnediknsdnsrftgsvMEVTtfdrgfgqpaasdfpvwdKIGAIVRLSYGIGIYGAMALAGRFICSitgvdsmggfhpSLDAIVEglgyaappIMALLFILDdevvklspharairDVEDEELRSFFYGMSPWQFVLIVAASSVGEELFYRAAVQGALADIFLRGtdfltdaqgmasltgvlppfvpFAQAFAAVITAALTGSLyyvatspkdptyvvapvlrsrsgreDLKKLFAAWYERRQMKKIYSPLLEGLLALYLGFewiqtnnilapiitHGIYSAVILGHGLWKIHDHRRRLHQRIQRLElegndsdrk
Flexible Loop (DISEMBL)
meiplasltssrattttslklngglgrelcvskkgtvksgpnqmrsrsnediknsdnsrfTGSVMEVTTFDRGFGQPAASDFPVWDKIGAIVRLSYGIGIYGAMALAGRFICSITGVDSMGGFHPSLDAIVEGLGYAAPPIMALLFILDDEVVKLSPHARAIRDVEDEELRSFFYGMSPWQFVLIVAASSVGEELFYRAAVQGALADIFLRGTDFLTDAQGMASLTGVLPPFVPFAQAFAAVITAALTGSLYYvatspkdptyvvapvlrsrsgredlKKLFAAWYERRQMKKIYSPLLEGLLALYLGFEWIQTNNILAPIITHGIYSAVILGHGLWKIHDHRRRLHQRIqrlelegndsdrk
Low Complexity Region (SEG)
MEIPlasltssrattttslklNGGLGRELCVSKKGTVKSGPNQMRSRSNEDIKNSDNSRFTGSVMEVTTFDRGFGQPAASDFPVWDKIGAIVRLSYGIGIYGAMALAGRFICSITGVDSMGGFHPSLDAIVEGLGYAAPPIMALLFILDDEVVKLSPHARAIRDVEDEELRSFFYGMSPWQFVLIVAASSVGEELFYRAAVQGALADIFLRGTDFLTDAQGMASLTGvlppfvpfaqafaavitaaLTGSLYYVATSPKDPTYVVAPVLRSRSGREDLKKLFAAWYERRQMKKIYSPllegllalylGFEWIQTNNILAPIITHGIYSAVILGHGLWKihdhrrrlhqriqrleleGNDSDRK
Disordered region (IsUnstruct)
***************************************************************VMEVTTFDRGFGQPAASDFPVWDKIGAIVRLSYGIGIYGAMALAGRFICSITGVDSMGGFHPSLDAIVEGLGYAAPPIMALLFILDDEVVKLSPHARAIRDVEDEELRSFFYGMSPWQFVLIVAASSVGEELFYRAAVQGALADIFLRGTDFLTDAQGMASLTGVLPPFVPFAQAFAAVITAALTGSLYYVATSPKDPTYVVAPVLRSRSGREDLKKLFAAWYERRQMKKIYSPLLEGLLALYLGFEWIQTNNILAPIITHGIYSAVILGHGLWKIHDHRRRLHQ***************
Disordered Region (DISOPRED)
***P******************GGLGRELCVSKK********************************VTTFDRGFGQPAASDFPVWDKIGAIVRLSYGIGIYGAMALAGRFICSITGVDSMGGFHPSLDAIVEGLGYAAPPIMALLFILDDEVVKLSPHARAIRDVEDEELRSFFYGMSPWQFVLIVAASSVGEELFYRAAVQGALADIFLRGTDFLTDAQGMASLTGVLPPFVPFAQAFAAVITAALTGSLYYVATSPKDPTYVVAPVL**********KLFAAWYERRQMKKIYSPLLEGLLALYLGFEWIQTNNILAPIITHGIYSAVILGHGLWKIHDHRRR******************
Disordered Region (DISEMBL)
*************TTTTSLKLNGGLGRELCVSKKG******************NSDNSRFTGSVMEVTTFDRGFGQPAASDFPVWDKIGAIVRLSYGIGIYGAMALAGRFICSITGVDSMGGFHPSLDAIVEGLGYAAPPIMALLFILDDEVVKLSPHARAIRDVEDEELRSFFYGMSPWQFVLIVAASSVGEELFYRAAVQGALADIFLRGTDFLTDAQGMASLTGVLPPFVPFAQAFAAVITAALTGSLYYVATSPKDPTYVVAPVLRSRSGREDLKKLFAAWYERRQMKKIYSPLLEGLLALYLGFEWIQTNNILAPIITHGIYSAVILGHGLWKIHDHRRRLHQRIQRLEL********
Disordered Region (DISPRO)
****************T*****GGLGRELCVSKKGTVKSG****************NSRFTGSVMEVTTFDRGFGQPAASDFPVWDKIGAIVRLSYGIGIYGAMALAGRFICSITGVDSMGGFHPSLDAIVEGLGYAAPPIMALLFILDDEVVKLSPHARAIRDVEDEELRSFFYGMSPWQFVLIVAASSVGEELFYRAAVQGALADIFLRGTDFLTDAQGMASLTGVLPPFVPFAQAFAAVITAALTGSLYYVATSPKDPTYVVAPVLRSRSGREDLKKLFAAWYERRQMKKIYSPLLEGLLALYLGFEWIQTNNILAPIITHGIYSAVILGHGLWKIHDHRRRLHQRIQRLEL********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEIPLASLTSSRATTTTSLKLNGGLGRELCVSKKGTVKSGPNQMRSRSNEDIKNSDNSRFTGSVMEVTTFDRGFGQPAASDFPVWDKIGAIVRLSYGIGIYGAMALAGRFICSITGVDSMGGFHPSLDAIVEGLGYAAPPIMALLFILDDEVVKLSPHARAIRDVEDEELRSFFYGMSPWQFVLIVAASSVGEELFYRAAVQGALADIFLRGTDFLTDAQGMASLTGVLPPFVPFAQAFAAVITAALTGSLYYVATSPKDPTYVVAPVLRSRSGREDLKKLFAAWYERRQMKKIYSPLLEGLLALYLGFEWIQTNNILAPIITHGIYSAVILGHGLWKIHDHRRRLHQRIQRLELEGNDSDRK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	363
224138100	382	predicted protein [Populus trichocarpa]	0.933	0.887	0.791	1e-144
225427218	367	PREDICTED: uncharacterized protein LOC10	0.925	0.915	0.765	1e-142
147779897	367	hypothetical protein VITISV_016425 [Viti	0.925	0.915	0.765	1e-142
219363603	375	uncharacterized protein LOC100217228 [Ze	0.774	0.749	0.811	1e-137
356497037	372	PREDICTED: uncharacterized protein LOC10	0.812	0.793	0.838	1e-136
125542022	380	hypothetical protein OsI_09601 [Oryza sa	0.776	0.742	0.795	1e-134
358248464	404	uncharacterized protein LOC100818224 [Gl	0.812	0.730	0.828	1e-134
357114532	366	PREDICTED: uncharacterized protein LOC10	0.779	0.773	0.787	1e-134
297823321	371	predicted protein [Arabidopsis lyrata su	0.809	0.792	0.797	1e-133
357482397	371	hypothetical protein MTR_5g014430 [Medic	0.815	0.797	0.807	1e-131

>gi|224138100|ref|XP_002326518.1| predicted protein [Populus trichocarpa] gi|222833840|gb|EEE72317.1| predicted protein [Populus trichocarpa]

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 274/346 (79%), Positives = 306/346 (88%), Gaps = 7/346 (2%)

Query: 18  SLKLNGGLGRELCVSKKGTVKSGPNQMRSRSNEDIKNSDNSRFTGSVMEVTTFDRGFGQP 77
           +L+ NG    ++  SK  T ++G        +E I+  +  RFTGS MEVTTFD+ FG  
Sbjct: 44  NLRENGVNRIQIRCSKASTERTGAG------SEGIEERERRRFTGSAMEVTTFDQSFGD- 96

Query: 78  AASDFPVWDKIGAIVRLSYGIGIYGAMALAGRFICSITGVDSMGGFHPSLDAIVEGLGYA 137
           AASDFP+W+KIGA+VRL YGIGIYG MALAGRFICSITG+DS+GGF+PSLDA +EGLGYA
Sbjct: 97  AASDFPLWEKIGAVVRLCYGIGIYGGMALAGRFICSITGIDSLGGFNPSLDAFLEGLGYA 156

Query: 138 APPIMALLFILDDEVVKLSPHARAIRDVEDEELRSFFYGMSPWQFVLIVAASSVGEELFY 197
           APP+MALLFILDDEVVKLSPHARAIRDVEDEELR+FFYGMSPWQF+LIVAASSVGEELFY
Sbjct: 157 APPVMALLFILDDEVVKLSPHARAIRDVEDEELRNFFYGMSPWQFILIVAASSVGEELFY 216

Query: 198 RAAVQGALADIFLRGTDFLTDAQGMASLTGVLPPFVPFAQAFAAVITAALTGSLYYVATS 257
           RAAVQGALADIFLRGT+ + DA+GMASLTGVLPPFVPFAQAFAAV+TA LTGSLYYVATS
Sbjct: 217 RAAVQGALADIFLRGTNLMEDARGMASLTGVLPPFVPFAQAFAAVLTAVLTGSLYYVATS 276

Query: 258 PKDPTYVVAPVLRSRSGREDLKKLFAAWYERRQMKKIYSPLLEGLLALYLGFEWIQTNNI 317
           PKDPTYVVAPVL S SGREDLKKLFAAWYERRQMKKIYSPLLEGLLALYLGFEWIQTNNI
Sbjct: 277 PKDPTYVVAPVLPSYSGREDLKKLFAAWYERRQMKKIYSPLLEGLLALYLGFEWIQTNNI 336

Query: 318 LAPIITHGIYSAVILGHGLWKIHDHRRRLHQRIQRLELEGNDSDRK 363
           LAPIITHGIYSAV+LGHGLWKIH+HRRRL +RIQ L+ E  +S+++
Sbjct: 337 LAPIITHGIYSAVVLGHGLWKIHEHRRRLRRRIQLLKSEEMNSNKR 382

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427218|ref|XP_002280448.1| PREDICTED: uncharacterized protein LOC100247252 [Vitis vinifera] gi|297742104|emb|CBI33891.3| unnamed protein product [Vitis vinifera]

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 271/354 (76%), Positives = 296/354 (83%), Gaps = 18/354 (5%)

Query: 1   MEIPLASLTSSRATTTTSLKLNGGLGRELCV---SKK---------GTVKSGPNQMRSRS 48
           MEIPL S T     TT+    +GG G   CV   +KK         G V++   + R   
Sbjct: 1   MEIPLISRTP-HPPTTSFCSSSGGAG--FCVLPATKKRNESKRCFGGFVRASAERSREGI 57

Query: 49  NEDIKNSDNSRFTGSVMEVTTFDRGFGQPAASDFPVWDKIGAIVRLSYGIGIYGAMALAG 108
           +   +      FT   MEVTT +R F     ++FPVW+KIGA+VRLSYGIGIYGAMALAG
Sbjct: 58  DGGREGERGGGFTSPAMEVTTLNRSFND---TEFPVWEKIGAVVRLSYGIGIYGAMALAG 114

Query: 109 RFICSITGVDSMGGFHPSLDAIVEGLGYAAPPIMALLFILDDEVVKLSPHARAIRDVEDE 168
           RFICS+TG+DSMGGF+PSLDAI+EGLGYAAPPIMALLFILDDEVVKLSPHARAIRDVEDE
Sbjct: 115 RFICSMTGIDSMGGFNPSLDAILEGLGYAAPPIMALLFILDDEVVKLSPHARAIRDVEDE 174

Query: 169 ELRSFFYGMSPWQFVLIVAASSVGEELFYRAAVQGALADIFLRGTDFLTDAQGMASLTGV 228
           E+RSFFYGMSPWQF+L+VAASSVGEELFYRAA+QGALADIFLRGT+F+TDA+GM SLTGV
Sbjct: 175 EIRSFFYGMSPWQFILMVAASSVGEELFYRAAIQGALADIFLRGTNFVTDARGMTSLTGV 234

Query: 229 LPPFVPFAQAFAAVITAALTGSLYYVATSPKDPTYVVAPVLRSRSGREDLKKLFAAWYER 288
           LPPFVPFAQAFAAVITAALTGSLYYVA SPKDPTYVVAPVL+SRSGR DLKKLFAAWYER
Sbjct: 235 LPPFVPFAQAFAAVITAALTGSLYYVAASPKDPTYVVAPVLQSRSGRADLKKLFAAWYER 294

Query: 289 RQMKKIYSPLLEGLLALYLGFEWIQTNNILAPIITHGIYSAVILGHGLWKIHDH 342
           RQMKKIYSPLLEGLLALYLGFEWIQTNNILAPIITHGIYS VILGHGLWKIHDH
Sbjct: 295 RQMKKIYSPLLEGLLALYLGFEWIQTNNILAPIITHGIYSTVILGHGLWKIHDH 348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147779897|emb|CAN74782.1| hypothetical protein VITISV_016425 [Vitis vinifera]

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 271/354 (76%), Positives = 296/354 (83%), Gaps = 18/354 (5%)

Query: 1   MEIPLASLTSSRATTTTSLKLNGGLGRELCV---SKK---------GTVKSGPNQMRSRS 48
           MEIPL S T     TT+    +GG G   CV   +KK         G V++   + R   
Sbjct: 1   MEIPLISRTP-HPPTTSFCSSSGGAG--FCVLPATKKRNESKRCFGGFVRASAERSREGI 57

Query: 49  NEDIKNSDNSRFTGSVMEVTTFDRGFGQPAASDFPVWDKIGAIVRLSYGIGIYGAMALAG 108
           +   +      FT   MEVTT +R F     ++FPVW+KIGA+VRLSYGIGIYGAMALAG
Sbjct: 58  DGGREGERGGGFTSPAMEVTTLNRSFND---TEFPVWEKIGAVVRLSYGIGIYGAMALAG 114

Query: 109 RFICSITGVDSMGGFHPSLDAIVEGLGYAAPPIMALLFILDDEVVKLSPHARAIRDVEDE 168
           RFICS+TG+DSMGGF+PSLDAI+EGLGYAAPPIMALLFILDDEVVKLSPHARAIRDVEDE
Sbjct: 115 RFICSMTGIDSMGGFNPSLDAILEGLGYAAPPIMALLFILDDEVVKLSPHARAIRDVEDE 174

Query: 169 ELRSFFYGMSPWQFVLIVAASSVGEELFYRAAVQGALADIFLRGTDFLTDAQGMASLTGV 228
           E+RSFFYGMSPWQF+L+VAASSVGEELFYRAA+QGALADIFLRGT+F+TDA+GM SLTGV
Sbjct: 175 EIRSFFYGMSPWQFILMVAASSVGEELFYRAAIQGALADIFLRGTNFVTDARGMTSLTGV 234

Query: 229 LPPFVPFAQAFAAVITAALTGSLYYVATSPKDPTYVVAPVLRSRSGREDLKKLFAAWYER 288
           LPPFVPFAQAFAAVITAALTGSLYYVA SPKDPTYVVAPVL+SRSGR DLKKLFAAWYER
Sbjct: 235 LPPFVPFAQAFAAVITAALTGSLYYVAASPKDPTYVVAPVLQSRSGRADLKKLFAAWYER 294

Query: 289 RQMKKIYSPLLEGLLALYLGFEWIQTNNILAPIITHGIYSAVILGHGLWKIHDH 342
           RQMKKIYSPLLEGLLALYLGFEWIQTNNILAPIITHGIYS VILGHGLWKIHDH
Sbjct: 295 RQMKKIYSPLLEGLLALYLGFEWIQTNNILAPIITHGIYSTVILGHGLWKIHDH 348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219363603|ref|NP_001137056.1| uncharacterized protein LOC100217228 [Zea mays] gi|194698184|gb|ACF83176.1| unknown [Zea mays] gi|224029455|gb|ACN33803.1| unknown [Zea mays] gi|238010912|gb|ACR36491.1| unknown [Zea mays] gi|413918921|gb|AFW58853.1| hypothetical protein ZEAMMB73_865816 [Zea mays] gi|413918922|gb|AFW58854.1| hypothetical protein ZEAMMB73_865816 [Zea mays]

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 228/281 (81%), Positives = 259/281 (92%)

Query: 80  SDFPVWDKIGAIVRLSYGIGIYGAMALAGRFICSITGVDSMGGFHPSLDAIVEGLGYAAP 139
           ++  +WDK+GA+VRLSYGIGIYGAMALAGRFIC + G+D  GGFHPSL A+VEGLGYAAP
Sbjct: 90  AELAMWDKLGAVVRLSYGIGIYGAMALAGRFICQMAGIDCTGGFHPSLTALVEGLGYAAP 149

Query: 140 PIMALLFILDDEVVKLSPHARAIRDVEDEELRSFFYGMSPWQFVLIVAASSVGEELFYRA 199
           PIMALLFILDDEVVK SPHARAIRDVEDEELRSFF GMSPWQF+LIVAASS+GEELFYRA
Sbjct: 150 PIMALLFILDDEVVKYSPHARAIRDVEDEELRSFFCGMSPWQFILIVAASSIGEELFYRA 209

Query: 200 AVQGALADIFLRGTDFLTDAQGMASLTGVLPPFVPFAQAFAAVITAALTGSLYYVATSPK 259
           A+QGALADIFLR T+ + DA+G+ASL+G++PP VPFAQ FAAVITAALTG+LYYVAT+PK
Sbjct: 210 AIQGALADIFLRSTELMKDARGIASLSGIVPPLVPFAQTFAAVITAALTGTLYYVATTPK 269

Query: 260 DPTYVVAPVLRSRSGREDLKKLFAAWYERRQMKKIYSPLLEGLLALYLGFEWIQTNNILA 319
           DPTYVV P +RSR+GRE+LKKLFAAWYERRQM+KIYSPLLEG+LA YLGFEWIQT+NILA
Sbjct: 270 DPTYVVTPAMRSRTGRENLKKLFAAWYERRQMRKIYSPLLEGILAFYLGFEWIQTDNILA 329

Query: 320 PIITHGIYSAVILGHGLWKIHDHRRRLHQRIQRLELEGNDS 360
           P+ITHGIYS V+LGHGLWKIHDHRRRL QRIQ++  EG+ S
Sbjct: 330 PMITHGIYSTVVLGHGLWKIHDHRRRLRQRIQKVRSEGSSS 370

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497037|ref|XP_003517371.1| PREDICTED: uncharacterized protein LOC100787147 isoform 2 [Glycine max]

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 249/297 (83%), Positives = 272/297 (91%), Gaps = 2/297 (0%)

Query: 47  RSNEDIKNSD-NSRFTGSVMEVTTFDRGFGQPAASDFPVWDKIGAIVRLSYGIGIYGAMA 105
           R+ + I + +  S FT   MEVTTF+R     AA DFPVW+KIGA+VRLSYGIGIYGAMA
Sbjct: 58  RTGDTIDDGEARSGFTTPAMEVTTFNRSTFSDAA-DFPVWEKIGAVVRLSYGIGIYGAMA 116

Query: 106 LAGRFICSITGVDSMGGFHPSLDAIVEGLGYAAPPIMALLFILDDEVVKLSPHARAIRDV 165
           +AG FICSITG+DS+GGFH SLDAI+EGLGYAAPPIMALLFILDDEVVKLSPHARAIRDV
Sbjct: 117 VAGSFICSITGIDSLGGFHLSLDAILEGLGYAAPPIMALLFILDDEVVKLSPHARAIRDV 176

Query: 166 EDEELRSFFYGMSPWQFVLIVAASSVGEELFYRAAVQGALADIFLRGTDFLTDAQGMASL 225
           EDEEL SFFYGMSPWQF+L+VAASSVGEELFYRAAVQGALADIFLRG++ +TD QGMASL
Sbjct: 177 EDEELWSFFYGMSPWQFILMVAASSVGEELFYRAAVQGALADIFLRGSNLITDVQGMASL 236

Query: 226 TGVLPPFVPFAQAFAAVITAALTGSLYYVATSPKDPTYVVAPVLRSRSGREDLKKLFAAW 285
           TGVLPPFVPFAQAFAAV+TA LTGSLYY+A SPKDPTYVVAPVL+SRSGR+DLKKLF AW
Sbjct: 237 TGVLPPFVPFAQAFAAVLTAVLTGSLYYMAASPKDPTYVVAPVLQSRSGRQDLKKLFEAW 296

Query: 286 YERRQMKKIYSPLLEGLLALYLGFEWIQTNNILAPIITHGIYSAVILGHGLWKIHDH 342
           YE+RQMKKIYSPLLEGLLALYLGFEWIQT+NILAPIITHGIYS VILGHGLWKI+DH
Sbjct: 297 YEKRQMKKIYSPLLEGLLALYLGFEWIQTDNILAPIITHGIYSTVILGHGLWKINDH 353

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125542022|gb|EAY88161.1| hypothetical protein OsI_09601 [Oryza sativa Indica Group] gi|125584575|gb|EAZ25239.1| hypothetical protein OsJ_09043 [Oryza sativa Japonica Group]

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 225/283 (79%), Positives = 255/283 (90%), Gaps = 1/283 (0%)

Query: 80  SDFPVWDKIGAIVRLSYGIGIYGAMALAGRFICSITGVDSMGGFHPSLDAIVEGLGYAAP 139
           ++  +W+++GA+VRLSYGIGIY AMAL GRFIC + G+D  GGFHPSL A+VEGLGYAAP
Sbjct: 96  AELAMWERLGAVVRLSYGIGIYAAMALTGRFICQMAGIDCTGGFHPSLSALVEGLGYAAP 155

Query: 140 PIMALLFILDDEVVKLSPHARAIRDVEDEELRSFFYGMSPWQFVLIVAASSVGEELFYRA 199
           PIMALLFILDDEVVK SPHARAIRDVEDEELRSFFYGMSPWQF+LIV ASS+GEELFYR 
Sbjct: 156 PIMALLFILDDEVVKYSPHARAIRDVEDEELRSFFYGMSPWQFILIVTASSIGEELFYRV 215

Query: 200 AVQGALADIFLRGTDFLTDAQGMASLTGVLPPFVPFAQAFAAVITAALTGSLYYVATSPK 259
           AVQGALADIFLRGT+ + DA+G+ASL+G++PPFVPFAQ FAA ITAALTGSLYYVAT+PK
Sbjct: 216 AVQGALADIFLRGTELMKDARGIASLSGMVPPFVPFAQTFAAAITAALTGSLYYVATAPK 275

Query: 260 DPTYVVAPVLRSRSGREDLKKLFAAWYERRQMKKIYSPLLEGLLALYLGFEWIQTNNILA 319
           DPTYVV P +RS +GRE+LKKLFAAWYERRQM+KIYSPLLEG+LA YLGFEWIQT+NILA
Sbjct: 276 DPTYVVTPAMRSNTGRENLKKLFAAWYERRQMRKIYSPLLEGILAFYLGFEWIQTDNILA 335

Query: 320 PIITHGIYSAVILGHGLWKIHDHRRRLHQRIQRLELEG-NDSD 361
           P+ITHGIYS V+L HGLWKIHDHRRRL QRIQ +  EG  +SD
Sbjct: 336 PMITHGIYSTVVLCHGLWKIHDHRRRLRQRIQEIRQEGTTNSD 378

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248464|ref|NP_001239886.1| uncharacterized protein LOC100818224 [Glycine max] gi|255638406|gb|ACU19513.1| unknown [Glycine max]

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 246/297 (82%), Positives = 271/297 (91%), Gaps = 2/297 (0%)

Query: 47  RSNEDIKNSDN-SRFTGSVMEVTTFDRGFGQPAASDFPVWDKIGAIVRLSYGIGIYGAMA 105
           R+ + I + +  + FT   MEVTTF+R     AA DFPVW+KIGA+VRLSYG+GIYGAMA
Sbjct: 90  RTGDTIDDGETRTGFTTPAMEVTTFNRTTFTDAA-DFPVWEKIGAVVRLSYGLGIYGAMA 148

Query: 106 LAGRFICSITGVDSMGGFHPSLDAIVEGLGYAAPPIMALLFILDDEVVKLSPHARAIRDV 165
           +AG FICSITG+DS+GGFH SLDAI+EGLGYAAPPIMALLFILDDEVVKLSPHARAIRDV
Sbjct: 149 VAGSFICSITGIDSLGGFHLSLDAILEGLGYAAPPIMALLFILDDEVVKLSPHARAIRDV 208

Query: 166 EDEELRSFFYGMSPWQFVLIVAASSVGEELFYRAAVQGALADIFLRGTDFLTDAQGMASL 225
           EDEEL SFFYGMSPWQF+L+VAASSVGEELFYRAAVQGALADIFLRG++ +TD QGMASL
Sbjct: 209 EDEELWSFFYGMSPWQFILMVAASSVGEELFYRAAVQGALADIFLRGSNLITDVQGMASL 268

Query: 226 TGVLPPFVPFAQAFAAVITAALTGSLYYVATSPKDPTYVVAPVLRSRSGREDLKKLFAAW 285
           TGVLPPFVPFAQAFAAV+TA LTGSLYY+A SPKDPTYVVAPVL+SRSGR+DLKKLF AW
Sbjct: 269 TGVLPPFVPFAQAFAAVLTAVLTGSLYYMAASPKDPTYVVAPVLQSRSGRQDLKKLFEAW 328

Query: 286 YERRQMKKIYSPLLEGLLALYLGFEWIQTNNILAPIITHGIYSAVILGHGLWKIHDH 342
           YE+RQMKKIYSPLLEGLLALYLG EWIQT+NILAPIITHGIYS VILGHGLWKI+DH
Sbjct: 329 YEKRQMKKIYSPLLEGLLALYLGCEWIQTDNILAPIITHGIYSTVILGHGLWKINDH 385

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357114532|ref|XP_003559054.1| PREDICTED: uncharacterized protein LOC100822795 [Brachypodium distachyon]

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 223/283 (78%), Positives = 257/283 (90%)

Query: 80  SDFPVWDKIGAIVRLSYGIGIYGAMALAGRFICSITGVDSMGGFHPSLDAIVEGLGYAAP 139
           ++  +W+K+GA+VRLSYGIGIY AMALAGRFIC I G+DS GGFHPSL A+VEGLGYA+P
Sbjct: 84  AELAMWEKLGALVRLSYGIGIYAAMALAGRFICHIAGIDSTGGFHPSLTALVEGLGYASP 143

Query: 140 PIMALLFILDDEVVKLSPHARAIRDVEDEELRSFFYGMSPWQFVLIVAASSVGEELFYRA 199
           PIM LLFILDDEVVK SPHARAIRDVEDEELR+FF GMSPWQF+LIVAASSVGEELFYRA
Sbjct: 144 PIMVLLFILDDEVVKYSPHARAIRDVEDEELRTFFLGMSPWQFILIVAASSVGEELFYRA 203

Query: 200 AVQGALADIFLRGTDFLTDAQGMASLTGVLPPFVPFAQAFAAVITAALTGSLYYVATSPK 259
           A+QGALADIFLRGT+ + DA+G+ SL+G++PPFVPFAQ FAA ITAALTGSLYY+AT+PK
Sbjct: 204 ALQGALADIFLRGTELMKDARGIVSLSGMVPPFVPFAQTFAAAITAALTGSLYYLATAPK 263

Query: 260 DPTYVVAPVLRSRSGREDLKKLFAAWYERRQMKKIYSPLLEGLLALYLGFEWIQTNNILA 319
           DPTYVV PV+RS +GRE++KKLFAAWYERRQM+KIYSPLLEG+LA YLGFEWIQT+NILA
Sbjct: 264 DPTYVVTPVMRSHNGRENIKKLFAAWYERRQMRKIYSPLLEGILAFYLGFEWIQTDNILA 323

Query: 320 PIITHGIYSAVILGHGLWKIHDHRRRLHQRIQRLELEGNDSDR 362
           P+ITHGIYS V+LGHGLWKI DHRRRL QRIQ +   G+D+ +
Sbjct: 324 PMITHGIYSTVVLGHGLWKIQDHRRRLRQRIQEIRQSGSDTHQ 366

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823321|ref|XP_002879543.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297325382|gb|EFH55802.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/297 (79%), Positives = 267/297 (89%), Gaps = 3/297 (1%)

Query: 47  RSNEDIKNSDNSR-FTGSVMEVTTFDRGFGQPAASDFPVWDKIGAIVRLSYGIGIYGAMA 105
           RS+E I+ +D    F G+ MEVTT DRGF      DFP+WDKIGA+VRL+YGIGIYGAMA
Sbjct: 57  RSSEGIEKTDGGGGFAGTAMEVTTLDRGFANSTTVDFPIWDKIGAVVRLTYGIGIYGAMA 116

Query: 106 LAGRFICSITGVDSMGGFHPSLDAIVEGLGYAAPPIMALLFILDDEVVKLSPHARAIRDV 165
           +AGRFICS+TG+DS GGF PSLDA++ GLGYA PPIMALLFILDDEVVKLSPHARAIRDV
Sbjct: 117 VAGRFICSVTGIDSSGGFDPSLDALLAGLGYATPPIMALLFILDDEVVKLSPHARAIRDV 176

Query: 166 EDEELRSFFYGMSPWQFVLIVAASSVGEELFYRAAVQGALADIFLRGTDFLTDAQGMASL 225
           EDEELRSFF+GMSPWQF+LIVAASS+GEELFYR AVQGAL+DIFL+GT  +TD++GMASL
Sbjct: 177 EDEELRSFFFGMSPWQFILIVAASSIGEELFYRVAVQGALSDIFLKGTQLMTDSRGMASL 236

Query: 226 TGVLPPFVPFAQAFAAVITAALTGSLYYVATSPKDPTYVVAPVLRSRSGREDLKKLFAAW 285
           TGV PPFVPFAQAFAAVITA LTGSLY++A SPKDPTY+VAPVLRSR  R+D KKL +AW
Sbjct: 237 TGVFPPFVPFAQAFAAVITATLTGSLYFLAASPKDPTYIVAPVLRSR--RDDFKKLLSAW 294

Query: 286 YERRQMKKIYSPLLEGLLALYLGFEWIQTNNILAPIITHGIYSAVILGHGLWKIHDH 342
           YE+RQMKKIYSPLLEGLLALYLG EW+QT+NILAP++THGIYSAVILGHGLWKIHDH
Sbjct: 295 YEKRQMKKIYSPLLEGLLALYLGIEWVQTDNILAPMLTHGIYSAVILGHGLWKIHDH 351

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482397|ref|XP_003611484.1| hypothetical protein MTR_5g014430 [Medicago truncatula] gi|355512819|gb|AES94442.1| hypothetical protein MTR_5g014430 [Medicago truncatula]

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 243/301 (80%), Positives = 270/301 (89%), Gaps = 5/301 (1%)

Query: 47  RSNEDIKNSDNSRF---TGSVMEVTT-FDRGFGQPA-ASDFPVWDKIGAIVRLSYGIGIY 101
           R+ + I +   +R    T + MEVTT F+RGF   A A+DFPVW+KIGA+VRLSYGIGIY
Sbjct: 52  RTGDTIDDRGETRTGFTTPAAMEVTTTFNRGFNDAAGAADFPVWEKIGAVVRLSYGIGIY 111

Query: 102 GAMALAGRFICSITGVDSMGGFHPSLDAIVEGLGYAAPPIMALLFILDDEVVKLSPHARA 161
           GAMA+AG FICSITG+DS+GGFH SLDAIV+GLGYA PPIMALLFILDDEVVKLSP+ARA
Sbjct: 112 GAMAVAGSFICSITGIDSLGGFHLSLDAIVQGLGYAVPPIMALLFILDDEVVKLSPYARA 171

Query: 162 IRDVEDEELRSFFYGMSPWQFVLIVAASSVGEELFYRAAVQGALADIFLRGTDFLTDAQG 221
           IRDVEDEEL SFFYGMSP QF+L+VAASSVGEELFYRAAVQGALADIFLRG++ + D +G
Sbjct: 172 IRDVEDEELWSFFYGMSPLQFILMVAASSVGEELFYRAAVQGALADIFLRGSNLIQDVRG 231

Query: 222 MASLTGVLPPFVPFAQAFAAVITAALTGSLYYVATSPKDPTYVVAPVLRSRSGREDLKKL 281
           MASLTGVLPPFVPFAQA AAV+TA LTGSLYYVA SPKDPTY+VAPVL+SR+ R+DLKKL
Sbjct: 232 MASLTGVLPPFVPFAQALAAVLTAVLTGSLYYVAASPKDPTYIVAPVLQSRASRQDLKKL 291

Query: 282 FAAWYERRQMKKIYSPLLEGLLALYLGFEWIQTNNILAPIITHGIYSAVILGHGLWKIHD 341
           F AWYE+RQMKKIYSPLLEGLLALYLGFEWIQTNNIL+PIITHGIYS VILGHGLWKIHD
Sbjct: 292 FEAWYEKRQMKKIYSPLLEGLLALYLGFEWIQTNNILSPIITHGIYSTVILGHGLWKIHD 351

Query: 342 H 342
           H
Sbjct: 352 H 352

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	363
TAIR|locus:2063484	382	AT2G35260 "AT2G35260" [Arabido	0.765	0.727	0.721	9e-109
TAIR|locus:2141000	422	AT4G17840 "AT4G17840" [Arabido	0.829	0.713	0.643	1.2e-99

TAIR|locus:2063484 AT2G35260 "AT2G35260" [Arabidopsis thaliana (taxid:3702)]

 Score = 1075 (383.5 bits), Expect = 9.0e-109, P = 9.0e-109
 Identities = 202/280 (72%), Positives = 229/280 (81%)

Query:    59 RFTGSVMEVTTFDRGFGQPAASDFPVWDKIGAIVRLSYGIGIYGAMALAGRFICSITGVD 118
             RF G+ MEVTT DRGF      DFP+WDKIGA+VRL+YGIGIYGAMA+AGRFICS+TG+D
Sbjct:    81 RFAGTAMEVTTLDRGFANSTTVDFPIWDKIGAVVRLTYGIGIYGAMAVAGRFICSVTGID 140

Query:   119 SMGGFHPSLDAIVEGLGYAAPPIMALLFILDDEVVKLSPHARAIRDVEDEELRSFFYGMS 178
             S GGF PSLDA++ GLGYA PPIMALLFILDDEVVKLSPHARAIRDVEDEELRSFF+GMS
Sbjct:   141 SSGGFDPSLDALLAGLGYATPPIMALLFILDDEVVKLSPHARAIRDVEDEELRSFFFGMS 200

Query:   179 PWQFVLIVAASSVGEELFYRAAVQGALADIFLRGTDFLTDAQGMASLTGXXXXXXXXXXX 238
             PWQF+LIVAASS+GEELFYR AVQGAL+DIFL+GT  +TD++GMASLTG           
Sbjct:   201 PWQFILIVAASSIGEELFYRVAVQGALSDIFLKGTQLMTDSRGMASLTGVFPPFVPFAEV 260

Query:   239 XXXXXXXXLTGSLYYVATSPKDPTYVVAPVLRSRSGREDLKKLFAAWYERRQMKKIYSPX 298
                     LTGSLY++A SPKDPTY+VAPVLRSR  R+D KKL +AWYE+RQMKKIYSP 
Sbjct:   261 FAAVITATLTGSLYFLAASPKDPTYIVAPVLRSR--RDDFKKLLSAWYEKRQMKKIYSPL 318

Query:   299 XXXXXXXXXGFEWIQTNNILAPIITHGIYSAVILGHGLWK 338
                      G EW+QT+NILAP++THGIYSAVILGHGLWK
Sbjct:   319 LEGLLALYLGIEWVQTDNILAPMMTHGIYSAVILGHGLWK 358

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2141000 AT4G17840 "AT4G17840" [Arabidopsis thaliana (taxid:3702)]

 Score = 989 (353.2 bits), Expect = 1.2e-99, P = 1.2e-99
 Identities = 195/303 (64%), Positives = 226/303 (74%)

Query:    37 VKSGP-NQMRSRSNEDIKNSDNSRFTGSVMEVTTFDRGFGQPAASDFPVWDKIGAIVRLS 95
             V SG    + S S+ +   + +    G   EVT+     G  +  DF  WDKIGAIVRLS
Sbjct:    97 VTSGDVTSVGSFSSGEFVGAGSGGLAGPSGEVTSVGEFVGG-SGGDFKDWDKIGAIVRLS 155

Query:    96 YGIGIYGAMALAGRFICSITGVDSMGGFHPSLDAIVEGLGYAAPPIMALLFILDDEVVKL 155
             YGIGIY  MA+AGRFIC + G+D  GGF+ SLD I+ GLGYA+PPIMALLFILDDEVVKL
Sbjct:   156 YGIGIYCGMAVAGRFICEVAGIDYTGGFNASLDTIIAGLGYASPPIMALLFILDDEVVKL 215

Query:   156 SPHARAIRDVEDEELRSFFYGMSPWQFVLIVAASSVGEELFYRAAVQGALADIFLRGTDF 215
             SPHARAIRDVED+ELR FF GMS WQF+L+V ASSVGEELFYRAA QGALADIFLRGTD 
Sbjct:   216 SPHARAIRDVEDDELRGFFQGMSAWQFILVVTASSVGEELFYRAAFQGALADIFLRGTDL 275

Query:   216 LTDAQGMASLTGXXXXXXXXXXXXXXXXXXXLTGSLYYVATSPKDPTYVVAPVLRSRSGR 275
             ++D++GM +LTG                   LTGSLYY+A SPKDPTY++APVL++RS R
Sbjct:   276 ISDSRGMVALTGLLPPFVPFAQVFAATITAALTGSLYYIAASPKDPTYIMAPVLKTRSAR 335

Query:   276 EDLKKLFAAWYERRQMKKIYSPXXXXXXXXXXGFEWIQTNNILAPIITHGIYSAVILGHG 335
             ++LKKLFAAWYERRQMKKIYSP          GFEWIQTNN+LAPIITHGIYSAV+LG+G
Sbjct:   336 DELKKLFAAWYERRQMKKIYSPLLEGLLGLYLGFEWIQTNNLLAPIITHGIYSAVVLGNG 395

Query:   336 LWK 338
             LWK
Sbjct:   396 LWK 398


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.138   0.415    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      363       299   0.00095  115 3  11 22  0.38    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  204 KB (2114 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.43u 0.11s 20.54t   Elapsed:  00:00:02
  Total cpu time:  20.43u 0.11s 20.54t   Elapsed:  00:00:02
  Start:  Fri May 10 07:39:35 2013   End:  Fri May 10 07:39:37 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00290183 hypothetical protein (382 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	363
PF02517	91	Abi: CAAX protease self-immunity; InterPro: IPR003	98.06
TIGR03008	222	pepcterm_CAAX CAAX prenyl protease-related protein	95.6
COG1266	226	Predicted metal-dependent membrane protease [Gener	95.2

>PF02517 Abi: CAAX protease self-immunity; InterPro: IPR003675 Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide is removed by one of the CAAX prenyl proteases)

Probab=98.06  E-value=6.1e-06  Score=60.69  Aligned_cols=89  Identities=22%  Similarity=0.347  Sum_probs=65.7

Q ss_pred             CchhhhHHhhhccchhHHHHHHHHhhhhHHHHhhCCCcccccccchhhcccCCCcchHHHHHHHHHHHHHhcceeeeecC
Q 017952          178 SPWQFVLIVAASSVGEELFYRAAVQGALADIFLRGTDFLTDAQGMASLTGVLPPFVPFAQAFAAVITAALTGSLYYVATS  257 (363)
Q Consensus       178 spwQFiliVaAssvgEElFyR~AvQGaladiflrgt~l~~d~~GmasLtgv~PpFvPFAq~fAavltaaLTGSlYyva~s  257 (363)
                      ..+.++..+....+.||++||..+|..+.+.  .+.                        ..|.++++.+=|.+.+..  
T Consensus         3 ~~~~~~~~~~~~~~~EEl~fRg~l~~~l~~~--~~~------------------------~~a~~is~~~f~~~H~~~--   54 (91)
T PF02517_consen    3 FLIFFLVMILIAPIAEELFFRGFLFNRLRRR--FNP------------------------WFAILISSLLFALWHLPN--   54 (91)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cch------------------------HHHHHHHHHHHHHHHHhh--
Confidence            3466777888899999999999999877654  110                        456666666666554432  


Q ss_pred             CCCCceEEeecccCccchHHHHHHHHHHHHHHhhhHhhhHHHHHHHHHHhcceeeeeCcchhhHHHhhhhhhh
Q 017952          258 PKDPTYVVAPVLRSRSGREDLKKLFAAWYERRQMKKIYSPLLEGLLALYLGFEWIQTNNILAPIITHGIYSAV  330 (363)
Q Consensus       258 pkDPtYvvaPv~~sr~~r~dlkklf~aWyErRqmkKIYSPLlEglLalYLGfEWiqT~NILAPiiTHgiYS~V  330 (363)
                                                         -.. -+.-.++|+.+|.-+..|+|+++|++.|+++..+
T Consensus        55 -----------------------------------~~~-~~~~~~~g~~~~~~~~~t~sl~~~i~~H~~~n~~   91 (91)
T PF02517_consen   55 -----------------------------------GPQ-FIYAFLFGLLFGYLYLRTGSLWAAIIAHALWNLV   91 (91)
T ss_pred             -----------------------------------hHH-HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHcC
Confidence                                               001 2666788999999999999999999999998653

The family contains the Q03530 from SWISSPROT CAAX prenyl protease []. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding []. While these proteins are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity []. This family also includes lysostaphin resistance protein A [].; GO: 0016020 membrane

>TIGR03008 pepcterm_CAAX CAAX prenyl protease-related protein

Probab=95.60  E-value=0.014  Score=53.04  Aligned_cols=38  Identities=24%  Similarity=0.413  Sum_probs=30.5

Q ss_pred             HHHHHHhcceeeeeCcchhhHHHhhhhh----hhhhccccch
Q 017952          301 GLLALYLGFEWIQTNNILAPIITHGIYS----AVILGHGLWK  338 (363)
Q Consensus       301 glLalYLGfEWiqT~NILAPiiTHgiYS----~VvlghGLwk  338 (363)
                      .+.|+.+|.-+..|+|+.+||+.|.+..    ..|+.-|=|.
T Consensus       179 ~l~Gli~~~l~~~tgsL~~~I~~H~~~N~ll~~~vl~~~~w~  220 (222)
T TIGR03008       179 LIAGLAYNLLLLRTGSIMACILAHAVTNGLLGLWVLLTGAWS  220 (222)
T ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHcCCcC
Confidence            4558889999999999999999998754    4567777664

The CAAX prenyl protease, in eukaryotes, catalyzes three covalent modifications, including cleavage and acylation, at the C-terminus of certain proteins in a process connected to protein sorting. This family describes a bacterial protein family homologous to one domain of the CAAX-processing enzyme. Members of this protein family are found in genomes that carry a predicted protein sorting system, PEP-CTERM/exosortase, usually in the vicinity of the EpsH homolog that is the hallmark of the system. The function of this protein is unknown, but it may relate to protein motification.

>COG1266 Predicted metal-dependent membrane protease [General function prediction only]

Probab=95.20  E-value=0.043  Score=44.51  Aligned_cols=27  Identities=26%  Similarity=0.645  Sum_probs=21.4

Q ss_pred             HHHHHhcceeeeeCcchhhHHHhhhhh
Q 017952          302 LLALYLGFEWIQTNNILAPIITHGIYS  328 (363)
Q Consensus       302 lLalYLGfEWiqT~NILAPiiTHgiYS  328 (363)
                      ..++-+|+-+.-|+|+..||+.|..+.
T Consensus       185 ~~gli~~~~~~~t~~l~~~i~~H~~~N  211 (226)
T COG1266         185 IAGLILGLLYLRTGSLWVPILLHALIN  211 (226)
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence            344455555679999999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00