Citrus Sinensis ID: 017980

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360---
MIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVDMEASYLTVEFFRKLPQEVEKAGNPGNSGNTASQAVDRYSDGHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLELYKAARDEIDSVSWAR
cHHHHHHHHHHHccccccccHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccEEHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHcccccHHHHHHccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
cHHHHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccEccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccHHHHHHcHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
mivarrkereyfatspdyghlagKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDhlgrpiavdAGAQLYTILELCRAFDRIFKEhldggrpggdriygvfdnqlpaalrklpfdrhlsLQNVKKVVSeadgyqphliapeqGYRRLIEGslsyfrgpaeasADAVHFVLKELVRKSigetqelkrfpTLQAEIAAAANEALERFRDEGRKTVIRLVDMEASYLTVEFFRKLPQevekagnpgnsgntasqavdrysdghfrrigsNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLgqlldedpAMMERRLQCAKRLELYKAARDEidsvswar
mivarrkereyfatspdyghlaGKMGSEYLAKLLSKHLESVirsripsitSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSigetqelkrfptLQAEIAAAANEALERFRDEGRKTVIRLVDMEASYLTVEFFRKLPQEVEkagnpgnsgntasqAVDRYSDGHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLELYKaardeidsvswar
MIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQaeiaaaanealeRFRDEGRKTVIRLVDMEASYLTVEFFRKLPQEVEKAGNPGNSGNTASQAVDRYSDGHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLELYKAARDEIDSVSWAR
****************DYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVDMEASYLTVEFFRKL**************************GHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLG*L***********LQCAKRLELYK*************
MIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDH**********AQLYTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVDMEASYLTVEFFRKLPQEVEKAGNPGNSGNTASQAVDRYSDGHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQL***LD***********CAKRLELYKAARDEIDSVSWA*
MIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVDMEASYLTVEFFRKLPQEVEKAGNPGNSGNTASQAVDRYSDGHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLELYKAARDEIDSVSWAR
MIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVDMEASYLTVEFFR*********************AVDRYSDGHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLELYKAARDEIDSVSWAR
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MIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVDMEASYLTVEFFRKLPQEVEKAGNPGNSGNTASQAVDRYSDGHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLELYKAARDEIDSVSWAR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query363 2.2.26 [Sep-21-2011]
Q9FNX5624 Dynamin-related protein 1 yes no 1.0 0.581 0.791 1e-177
Q8LF21614 Dynamin-related protein 1 no no 0.988 0.584 0.764 1e-166
Q8S3C9612 Dynamin-related protein 1 no no 0.986 0.584 0.721 1e-160
Q39828610 Dynamin-related protein 5 no no 0.983 0.585 0.630 1e-142
Q39821610 Dynamin-related protein 1 no no 0.983 0.585 0.622 1e-140
Q84XF3610 Dynamin-related protein 1 no no 0.983 0.585 0.622 1e-138
P42697610 Dynamin-related protein 1 no no 0.983 0.585 0.622 1e-137
Q9LQ55 920 Dynamin-2B OS=Arabidopsis no no 0.617 0.243 0.370 8e-38
Q9SE83 914 Dynamin-2A OS=Arabidopsis no no 0.617 0.245 0.375 9e-38
P54861 757 Dynamin-related protein D yes no 0.628 0.301 0.268 3e-19
>sp|Q9FNX5|DRP1E_ARATH Dynamin-related protein 1E OS=Arabidopsis thaliana GN=DRP1E PE=1 SV=1 Back     alignment and function desciption
 Score =  620 bits (1600), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 289/365 (79%), Positives = 333/365 (91%), Gaps = 2/365 (0%)

Query: 1   MIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEEL 60
           M++ARRKEREYF TSPDYGHLA KMGSEYLAKLLSKHLESVIR+RIPSI SLINKSIEEL
Sbjct: 260 MMLARRKEREYFDTSPDYGHLASKMGSEYLAKLLSKHLESVIRTRIPSILSLINKSIEEL 319

Query: 61  ESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALR 120
           E E+D +GRP+AVDAGAQLYTILE+CRAFD+IFKEHLDGGRPGGDRIYGVFDNQLPAAL+
Sbjct: 320 ERELDRMGRPVAVDAGAQLYTILEMCRAFDKIFKEHLDGGRPGGDRIYGVFDNQLPAALK 379

Query: 121 KLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVL 180
           KLPFDRHLSLQ+VKK+VSEADGYQPHLIAPEQGYRRLIEG+L YFRGPAEAS DAVH+VL
Sbjct: 380 KLPFDRHLSLQSVKKIVSEADGYQPHLIAPEQGYRRLIEGALGYFRGPAEASVDAVHYVL 439

Query: 181 KELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVDMEASYLTVEFFR 240
           KELVRKSI ET+ELKRFP+LQ E+AAAAN +LE+FR+E +K+VIRLVDME++YLT EFFR
Sbjct: 440 KELVRKSISETEELKRFPSLQVELAAAANSSLEKFREESKKSVIRLVDMESAYLTAEFFR 499

Query: 241 KLPQEVEK--AGNPGNSGNTASQAVDRYSDGHFRRIGSNVSSYVGMVSETLRTTIPKAIV 298
           KLPQE+E+    +   + + +S  +D+Y DGHFRRI SNVS+YV MVS+TLR TIPKA V
Sbjct: 500 KLPQEIERPVTNSKNQTASPSSATLDQYGDGHFRRIASNVSAYVNMVSDTLRNTIPKACV 559

Query: 299 YCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLELYKAARDEIDS 358
           YCQVR+AKL+LLN+FY+QI ++E KQLGQLLDEDPA+M+RRL+CAKRLELYK ARDEID+
Sbjct: 560 YCQVRQAKLALLNYFYSQISKREGKQLGQLLDEDPALMDRRLECAKRLELYKKARDEIDA 619

Query: 359 VSWAR 363
           V+W R
Sbjct: 620 VAWVR 624
Microtubule-associated force-producing protein that is targeted to the tubulo-vesicular network of the forming cell plate during cytokinesis. Plays also a major role in plasma membrane maintenance and cell wall integrity with an implication in vesicular trafficking, polar cell expansion, and other aspects of plant growth and development.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8LF21|DRP1C_ARATH Dynamin-related protein 1C OS=Arabidopsis thaliana GN=DRP1C PE=1 SV=2 Back     alignment and function description
>sp|Q8S3C9|DRP1D_ARATH Dynamin-related protein 1D OS=Arabidopsis thaliana GN=DRP1D PE=2 SV=2 Back     alignment and function description
>sp|Q39828|SDL5A_SOYBN Dynamin-related protein 5A OS=Glycine max PE=2 SV=1 Back     alignment and function description
>sp|Q39821|SDLCA_SOYBN Dynamin-related protein 12A OS=Glycine max PE=1 SV=1 Back     alignment and function description
>sp|Q84XF3|DRP1B_ARATH Dynamin-related protein 1B OS=Arabidopsis thaliana GN=DRP1B PE=2 SV=1 Back     alignment and function description
>sp|P42697|DRP1A_ARATH Dynamin-related protein 1A OS=Arabidopsis thaliana GN=DRP1A PE=1 SV=3 Back     alignment and function description
>sp|Q9LQ55|DRP2B_ARATH Dynamin-2B OS=Arabidopsis thaliana GN=DRP2B PE=1 SV=2 Back     alignment and function description
>sp|Q9SE83|DRP2A_ARATH Dynamin-2A OS=Arabidopsis thaliana GN=DRP2A PE=1 SV=2 Back     alignment and function description
>sp|P54861|DNM1_YEAST Dynamin-related protein DNM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DNM1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query363
225453246 619 PREDICTED: dynamin-related protein 1E is 0.997 0.584 0.884 0.0
359489239 602 PREDICTED: dynamin-related protein 1E is 0.997 0.601 0.884 0.0
147803428 631 hypothetical protein VITISV_030342 [Viti 0.997 0.573 0.881 0.0
356520720 618 PREDICTED: dynamin-related protein 1E-li 0.991 0.582 0.873 0.0
356520724 598 PREDICTED: dynamin-related protein 1E-li 0.991 0.602 0.873 0.0
449432338 621 PREDICTED: dynamin-related protein 1E-li 1.0 0.584 0.870 0.0
356504503 618 PREDICTED: dynamin-related protein 1E-li 0.991 0.582 0.862 0.0
356504507 598 PREDICTED: dynamin-related protein 1E-li 0.991 0.602 0.862 0.0
255571115 618 dynamin, putative [Ricinus communis] gi| 0.994 0.584 0.892 0.0
359489241 613 PREDICTED: dynamin-related protein 1E [V 0.980 0.580 0.867 0.0
>gi|225453246|ref|XP_002265511.1| PREDICTED: dynamin-related protein 1E isoform 1 [Vitis vinifera] gi|297734680|emb|CBI16731.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/363 (88%), Positives = 341/363 (93%), Gaps = 1/363 (0%)

Query: 1   MIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEEL 60
           MIVARRKEREYFATSPDYGHLA KMGSEYLAKLLSKHLE+VIR+RIPSITSLINKSI+EL
Sbjct: 258 MIVARRKEREYFATSPDYGHLASKMGSEYLAKLLSKHLETVIRARIPSITSLINKSIDEL 317

Query: 61  ESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALR 120
           ESEMDHLGRPIAVDAGAQLYTILELCRAFD IFKEHLDGGRPGGDRIYGVFDNQLPAALR
Sbjct: 318 ESEMDHLGRPIAVDAGAQLYTILELCRAFDCIFKEHLDGGRPGGDRIYGVFDNQLPAALR 377

Query: 121 KLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVL 180
           KLPFDRHLSLQNV+K+VSEADGYQPHLIAPEQGYRRLIEGSL+YFRGPAEAS DAVHFVL
Sbjct: 378 KLPFDRHLSLQNVRKIVSEADGYQPHLIAPEQGYRRLIEGSLNYFRGPAEASVDAVHFVL 437

Query: 181 KELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVDMEASYLTVEFFR 240
           KELVRKSIGETQELKRFPTLQAEI+AA  E+LERFRD+ +KTVIRLV+MEASYLTVEFFR
Sbjct: 438 KELVRKSIGETQELKRFPTLQAEISAATGESLERFRDDSKKTVIRLVEMEASYLTVEFFR 497

Query: 241 KLPQEVEKAGNPGNSGNTASQAVDRYSDGHFRRIGSNVSSYVGMVSETLRTTIPKAIVYC 300
           KLPQEVEK GNP   GN A+  VDRY++GHFRRI SNVSSYV MVS+TLR TIPKA+V+C
Sbjct: 498 KLPQEVEKVGNPAG-GNPAASTVDRYTEGHFRRIASNVSSYVNMVSDTLRNTIPKAVVHC 556

Query: 301 QVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLELYKAARDEIDSVS 360
           QVREAK SLLN FYTQIG+KE KQL Q+LDEDPA+MERR QCAKRLELYKAARDEIDSVS
Sbjct: 557 QVREAKQSLLNLFYTQIGKKEGKQLSQMLDEDPALMERRQQCAKRLELYKAARDEIDSVS 616

Query: 361 WAR 363
           W R
Sbjct: 617 WVR 619

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359489239|ref|XP_002265553.2| PREDICTED: dynamin-related protein 1E isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147803428|emb|CAN71045.1| hypothetical protein VITISV_030342 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356520720|ref|XP_003529008.1| PREDICTED: dynamin-related protein 1E-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356520724|ref|XP_003529010.1| PREDICTED: dynamin-related protein 1E-like isoform 3 [Glycine max] Back     alignment and taxonomy information
>gi|449432338|ref|XP_004133956.1| PREDICTED: dynamin-related protein 1E-like [Cucumis sativus] gi|449515538|ref|XP_004164806.1| PREDICTED: dynamin-related protein 1E-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356504503|ref|XP_003521035.1| PREDICTED: dynamin-related protein 1E-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356504507|ref|XP_003521037.1| PREDICTED: dynamin-related protein 1E-like isoform 3 [Glycine max] Back     alignment and taxonomy information
>gi|255571115|ref|XP_002526508.1| dynamin, putative [Ricinus communis] gi|223534183|gb|EEF35899.1| dynamin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359489241|ref|XP_003633899.1| PREDICTED: dynamin-related protein 1E [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query363
TAIR|locus:2101482624 DL1E "DYNAMIN-like 1E" [Arabid 1.0 0.581 0.775 2e-152
TAIR|locus:2006777614 DL1C "DYNAMIN-like 1C" [Arabid 0.988 0.584 0.739 1.4e-142
TAIR|locus:2042371612 DL1D "DYNAMIN-like 1D" [Arabid 0.986 0.584 0.710 5.8e-137
UNIPROTKB|Q39821610 Q39821 "Dynamin-related protei 0.983 0.585 0.608 7.4e-121
TAIR|locus:2076780610 DL1B "DYNAMIN-like 1B" [Arabid 0.983 0.585 0.611 1.8e-119
TAIR|locus:2165805610 DL1 "dynamin-like protein" [Ar 0.983 0.585 0.608 4.7e-119
TAIR|locus:2012763 914 ADL6 "dynamin-like protein 6" 0.661 0.262 0.342 7e-42
TAIR|locus:2202847 920 DL3 "dynamin-like 3" [Arabidop 0.658 0.259 0.353 7e-42
SGD|S000003924 757 DNM1 "Dynamin-related GTPase i 0.622 0.298 0.266 2.5e-21
ASPGD|ASPL0000044708 794 AN8874 [Emericella nidulans (t 0.534 0.244 0.274 7e-20
TAIR|locus:2101482 DL1E "DYNAMIN-like 1E" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1487 (528.5 bits), Expect = 2.0e-152, P = 2.0e-152
 Identities = 283/365 (77%), Positives = 324/365 (88%)

Query:     1 MIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEEL 60
             M++ARRKEREYF TSPDYGHLA KMGSEYLAKLLSKHLESVIR+RIPSI SLINKSIEEL
Sbjct:   260 MMLARRKEREYFDTSPDYGHLASKMGSEYLAKLLSKHLESVIRTRIPSILSLINKSIEEL 319

Query:    61 ESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALR 120
             E E+D +GRP+AVDAGAQLYTILE+CRAFD+IFKEHLDGGRPGGDRIYGVFDNQLPAAL+
Sbjct:   320 ERELDRMGRPVAVDAGAQLYTILEMCRAFDKIFKEHLDGGRPGGDRIYGVFDNQLPAALK 379

Query:   121 KLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVL 180
             KLPFDRHLSLQ+VKK+VSEADGYQPHLIAPEQGYRRLIEG+L YFRGPAEAS DAVH+VL
Sbjct:   380 KLPFDRHLSLQSVKKIVSEADGYQPHLIAPEQGYRRLIEGALGYFRGPAEASVDAVHYVL 439

Query:   181 KELVRKSIGETQELKRFPTLQXXXXXXXXXXXXRFRDEGRKTVIRLVDMEASYLTVEFFR 240
             KELVRKSI ET+ELKRFP+LQ            +FR+E +K+VIRLVDME++YLT EFFR
Sbjct:   440 KELVRKSISETEELKRFPSLQVELAAAANSSLEKFREESKKSVIRLVDMESAYLTAEFFR 499

Query:   241 KLPQEVEK-AGNPGN-SGNTASQAVDRYSDGHFRRIGSNVSSYVGMVSETLRTTIPKAIV 298
             KLPQE+E+   N  N + + +S  +D+Y DGHFRRI SNVS+YV MVS+TLR TIPKA V
Sbjct:   500 KLPQEIERPVTNSKNQTASPSSATLDQYGDGHFRRIASNVSAYVNMVSDTLRNTIPKACV 559

Query:   299 YCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLELYKAARDEIDS 358
             YCQVR+AKL+LLN+FY+QI ++E KQLGQLLDEDPA+M+RRL+CAKRLELYK ARDEID+
Sbjct:   560 YCQVRQAKLALLNYFYSQISKREGKQLGQLLDEDPALMDRRLECAKRLELYKKARDEIDA 619

Query:   359 VSWAR 363
             V+W R
Sbjct:   620 VAWVR 624
GO:0003924 "GTPase activity" evidence=IEA;ISS
GO:0005525 "GTP binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0016192 "vesicle-mediated transport" evidence=ISS
GO:0005773 "vacuole" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0005886 "plasma membrane" evidence=IDA
GO:0005739 "mitochondrion" evidence=IDA
GO:0050832 "defense response to fungus" evidence=RCA;IMP
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0000165 "MAPK cascade" evidence=RCA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0009595 "detection of biotic stimulus" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0031348 "negative regulation of defense response" evidence=RCA
GO:0042742 "defense response to bacterium" evidence=RCA
GO:0043900 "regulation of multi-organism process" evidence=RCA
TAIR|locus:2006777 DL1C "DYNAMIN-like 1C" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042371 DL1D "DYNAMIN-like 1D" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q39821 Q39821 "Dynamin-related protein 12A" [Glycine max (taxid:3847)] Back     alignment and assigned GO terms
TAIR|locus:2076780 DL1B "DYNAMIN-like 1B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165805 DL1 "dynamin-like protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012763 ADL6 "dynamin-like protein 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202847 DL3 "dynamin-like 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
SGD|S000003924 DNM1 "Dynamin-related GTPase involved in mitochondrial organization" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
ASPGD|ASPL0000044708 AN8874 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FNX5DRP1E_ARATHNo assigned EC number0.79171.00.5817yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_II1217
hypothetical protein (614 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
pfam01031296 pfam01031, Dynamin_M, Dynamin central region 2e-70
smart0030292 smart00302, GED, Dynamin GTPase effector domain 6e-27
pfam0221290 pfam02212, GED, Dynamin GTPase effector domain 2e-25
cd08771278 cd08771, DLP_1, Dynamin_like protein family includ 1e-04
>gnl|CDD|216255 pfam01031, Dynamin_M, Dynamin central region Back     alignment and domain information 
 Score =  221 bits (566), Expect = 2e-70
 Identities = 73/263 (27%), Positives = 118/263 (44%), Gaps = 13/263 (4%)

Query: 1   MIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEEL 60
           +  A   ER +F   P Y  LA + G+ YLAK L++ L + IR  +P + S INK ++E 
Sbjct: 33  IKEALEDERAFFENHPHYRTLAERCGTPYLAKKLNQELVNHIRKSLPDLKSQINKKLQET 92

Query: 61  ESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRP--------GGDRIYGVFD 112
           E E++  G     D   +   +L+L  AF++ FK  +DG           GG RI  +F 
Sbjct: 93  EKELERYGDDPPEDPAEKGAFLLDLITAFNQDFKNLIDGEEDDLSTNELSGGARIRYIFH 152

Query: 113 NQLPAALRKLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEAS 172
              P  L+ +     LS + ++  +    G +  L  PE+ +  L++  +     PA   
Sbjct: 153 EWFPKLLKSIDPFEKLSDEEIRTAIRNYRGRRLPLFVPEKAFELLVKKQIKRLEEPALKC 212

Query: 173 ADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVDMEAS 232
            D V+  L+ +  K    ++EL RFP L+  I     + L    +   K V  L+DME +
Sbjct: 213 VDLVYEELRRIFLKIA--SKELSRFPNLKEAIKEVVEDILREQLEPTEKMVRDLIDMELA 270

Query: 233 YLTV---EFFRKLPQEVEKAGNP 252
           Y+     +F   L    +K    
Sbjct: 271 YINTNHPDFIGGLQAVKKKEEEE 293

This region lies between the GTPase domain, see pfam00350, and the pleckstrin homology (PH) domain, see pfam00169. Length = 296
>gnl|CDD|128597 smart00302, GED, Dynamin GTPase effector domain Back     alignment and domain information
>gnl|CDD|202159 pfam02212, GED, Dynamin GTPase effector domain Back     alignment and domain information
>gnl|CDD|206738 cd08771, DLP_1, Dynamin_like protein family includes dynamins and Mx proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 363
PF01031295 Dynamin_M: Dynamin central region; InterPro: IPR00 100.0
KOG0446657 consensus Vacuolar sorting protein VPS1, dynamin, 100.0
PF0221292 GED: Dynamin GTPase effector domain; InterPro: IPR 99.88
smart0030292 GED Dynamin GTPase effector domain. 99.85
COG0699546 Predicted GTPases (dynamin-related) [General funct 97.48
cd05131339 RasGAP_IQGAP2 IQGAP2 is a member of the IQGAP fami 89.73
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles Back     alignment and domain information 
Probab=100.00  E-value=1.7e-50  Score=379.27  Aligned_cols=234  Identities=31%  Similarity=0.512  Sum_probs=217.4

Q ss_pred             CHHHHHHHHHHhccCCCchhhhcccChHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHH
Q 017980            1 MIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLY   80 (363)
Q Consensus         1 ~~~A~~~E~~FF~~~~~w~~l~~r~G~~~L~~~Ls~lL~~~I~~~LP~l~~eI~~~l~~~~~eL~~Lg~~~~~~~~~~~~   80 (363)
                      +++|++.|.+||++||+|+..+++|||++|+.+|+++|++||+++||.|+.+|+++|.+++++|+.||+++++++.+++.
T Consensus        33 ~~~a~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~I~~~LP~l~~~I~~~l~~~~~eL~~lG~~~~~~~~~~~~  112 (295)
T PF01031_consen   33 IEEARQKEKEFFSNHPWYSSPADRCGTPALRKRLSELLVEHIRKSLPSLKSEIQKKLQEAEKELKRLGPPRPETPEEQRA  112 (295)
T ss_dssp             HHHHHHHHHHHHHHSTTTGGGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHCSSSCHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence            46899999999999999999779999999999999999999999999999999999999999999999999977899999


Q ss_pred             HHHHHHHHHHHHHHhhccCCCC---------CccchhhhhhcchhHhcccCCCCcccCHHhHHHHHHhccCCCCCCCCcH
Q 017980           81 TILELCRAFDRIFKEHLDGGRP---------GGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSEADGYQPHLIAPE  151 (363)
Q Consensus        81 ~L~~~~~~f~~~~~~~l~G~~~---------gg~ri~~~f~~~f~~~l~~~~~~~~~~~~~I~~~i~~~~G~e~~~f~p~  151 (363)
                      +|++++++|++.++++++|.|.         ||+||+++|++.|...+..+++.+.+++++|++++++++|+++|+|.|+
T Consensus       113 ~l~~~~~~f~~~~~~~i~G~~~~~~~~~~l~~~ari~~~f~~~~~~~~~~~~~~~~~~~~eI~~~i~~~~G~elp~f~p~  192 (295)
T PF01031_consen  113 YLLQIISKFSRIFKDAIDGEYSDEFSTNELRGGARIRYIFNEWFDKFLEKIDPFEDLSDEEIRTAIRNSRGRELPGFVPE  192 (295)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-------TTS--HHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHH--S-SSS-SCCH
T ss_pred             HHHHHHHHHHHHHHHHhcCCccccccccccchhhHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHhhcccccccchhH
Confidence            9999999999999999999985         5899999999999999888888888999999999999999999999999


Q ss_pred             HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhchhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017980          152 QGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVDMEA  231 (363)
Q Consensus       152 ~~~~~L~~~qi~~w~~pa~~~v~~V~~~~~~~v~~~~~~~~~~~~~p~L~~~v~~~i~~~l~~~~~~~~~~i~~li~~E~  231 (363)
                      .+|+.|+++|+++|++||.+|++.|++.+.+++..++.  .+|.+||.|++++.+++.++++++.++|.++|+++++||+
T Consensus       193 ~afe~Li~~~i~~l~~Pa~~cv~~V~~~l~~i~~~~~~--~~~~~fp~L~~~i~~~v~~~l~~~~~~a~~~i~~li~~E~  270 (295)
T PF01031_consen  193 SAFESLIRKQIEKLEEPALQCVEEVHEELQRIVEQVLE--KEFERFPNLKEAIKEAVQQLLEECREPAKEMIENLIDMEL  270 (295)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHC--HHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcc--hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999885  6999999999999999999999999999999999999999


Q ss_pred             cCCCh
Q 017980          232 SYLTV  236 (363)
Q Consensus       232 ~~i~t  236 (363)
                      +||||
T Consensus       271 ~~i~T  275 (295)
T PF01031_consen  271 SYINT  275 (295)
T ss_dssp             TS--T
T ss_pred             ccCCC
Confidence            99999

At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only] Back     alignment and domain information
>PF02212 GED: Dynamin GTPase effector domain; InterPro: IPR003130 Dynamin GTPase effector domain found in proteins related to dynamin Back     alignment and domain information
>smart00302 GED Dynamin GTPase effector domain Back     alignment and domain information
>COG0699 Predicted GTPases (dynamin-related) [General function prediction only] Back     alignment and domain information
>cd05131 RasGAP_IQGAP2 IQGAP2 is a member of the IQGAP family that contains a calponin-homology (CH) domain which binds F-actin, IQGAP-specific repeat, a single WW domain, four IQ motifs which mediate interactions with calmodulin, and a Ras-GTPase-activating protein (GAP)-related domain that binds Rho family GTPases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
3t34_A360 Arabidopsis Thaliana Dynamin-Related Protein 1a (At 1e-22
3t34_A360 Arabidopsis Thaliana Dynamin-Related Protein 1a (At 3e-04
3snh_A 743 Crystal Structure Of Nucleotide-Free Human Dynamin1 2e-15
3zvr_A 772 Crystal Structure Of Dynamin Length = 772 3e-15
3zyc_A353 Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gm 1e-05
2x2e_A353 Dynamin Gtpase Dimer, Long Axis Form Length = 353 6e-05
2aka_B299 Structure Of The Nucleotide-Free Myosin Ii Motor Do 6e-05
>pdb|3T34|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a) In Prefission State Length = 360 Back     alignment and structure 
Iteration: 1

 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/72 (66%), Positives = 61/72 (84%)
Query: 1   MIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEEL 60
           MI AR++EREYF+ + +Y HLA KMGSE+LAK+LSKHLE VI+SRIP I SLINK++ EL
Sbjct: 254 MIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQSLINKTVLEL 313
Query: 61  ESEMDHLGRPIA 72
           E+E+  LG+PIA
Sbjct: 314 ETELSRLGKPIA 325
>pdb|3T34|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a) In Prefission State Length = 360 Back     alignment and structure
>pdb|3SNH|A Chain A, Crystal Structure Of Nucleotide-Free Human Dynamin1 Length = 743 Back     alignment and structure
>pdb|3ZVR|A Chain A, Crystal Structure Of Dynamin Length = 772 Back     alignment and structure
>pdb|3ZYC|A Chain A, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp Length = 353 Back     alignment and structure
>pdb|2X2E|A Chain A, Dynamin Gtpase Dimer, Long Axis Form Length = 353 Back     alignment and structure
>pdb|2AKA|B Chain B, Structure Of The Nucleotide-Free Myosin Ii Motor Domain From Dictyostelium Discoideum Fused To The Gtpase Domain Of Dynamin 1 From Rattus Norvegicus Length = 299 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
3szr_A608 Interferon-induced GTP-binding protein MX1; interf 2e-61
3zvr_A 772 Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito 1e-55
3zvr_A772 Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito 2e-23
3t34_A360 Dynamin-related protein 1A, linker, dynamin-relat 7e-25
2x2e_A353 Dynamin-1; nitration, hydrolase, membrane fission, 6e-20
1jwy_B315 Dynamin A GTPase domain; dynamin, GTPase, GDP, myo 2e-14
2aka_B299 Dynamin-1; fusion protein, GTPase domain, myosin, 2e-13
3ljb_A271 Interferon-induced GTP-binding protein MX1; four-h 3e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B Length = 608 Back     alignment and structure
 Score =  206 bits (525), Expect = 2e-61
 Identities = 52/366 (14%), Positives = 117/366 (31%), Gaps = 37/366 (10%)

Query: 1   MIVARRKEREYFATSPDYGHLA--GKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIE 58
           +  A ++E+ +F   P +  L   GK     LA+ L+  L + I   +P + + I ++ +
Sbjct: 267 LSEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQ 326

Query: 59  ELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRP-------GGDRIYGVF 111
            +  E+   G  I  D   +++ +++   AF++     + G             R+   F
Sbjct: 327 RITEELQKYGVDIPEDENEKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEF 386

Query: 112 DNQLPAALRKLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEA 171
                           +  + ++K  ++A   +       + +  +++  +     PA  
Sbjct: 387 HKWSTIIENNFQEGHKILSRKIQKFENQAAAAELPGFVNYRTFETIVKQQIKALEEPAVD 446

Query: 172 SADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVDMEA 231
               V  +++          +  + F  L     +   +       EG K +     ME 
Sbjct: 447 MLHTVTDMVRLAFTDVS--IKNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLHFQMEQ 504

Query: 232 SYLTVEFFRKLPQEVEKAGNPGNSGNTASQAVDRYSDGHFRRIGSNVSSYVGMVSETLRT 291
                                       +      +D     I  ++ +Y    S+ + +
Sbjct: 505 IV------------------------YGAFQSSSATDSSMEEIFQHLMAYHQEASKRISS 540

Query: 292 TIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLELYKA 351
            IP  I +  ++     L       +  K+      LL E     ++R    +RL     
Sbjct: 541 HIPLIIQFFMLQTYGQQLQKAMLQLLQDKD--TYSWLLKERSDTSDKRKFLKERLARLTQ 598

Query: 352 ARDEID 357
           AR  + 
Sbjct: 599 ARRRLA 604
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A Length = 772 Back     alignment and structure
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A Length = 772 Back     alignment and structure
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* Length = 360 Back     alignment and structure
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A Length = 353 Back     alignment and structure
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* Length = 315 Back     alignment and structure
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* Length = 299 Back     alignment and structure
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens} Length = 271 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query363
3szr_A608 Interferon-induced GTP-binding protein MX1; interf 100.0
3zvr_A772 Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito 100.0
3ljb_A271 Interferon-induced GTP-binding protein MX1; four-h 100.0
3t34_A360 Dynamin-related protein 1A, linker, dynamin-relat 99.33
2x2e_A353 Dynamin-1; nitration, hydrolase, membrane fission, 99.27
1jwy_B315 Dynamin A GTPase domain; dynamin, GTPase, GDP, myo 97.86
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B Back     alignment and structure
Probab=100.00  E-value=9.4e-60  Score=480.54  Aligned_cols=330  Identities=15%  Similarity=0.230  Sum_probs=290.6

Q ss_pred             HHHHHHHHHHhccCCCchhhh--cccChHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHHHHHhhcCCCCCCChhHHH
Q 017980            2 IVARRKEREYFATSPDYGHLA--GKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQL   79 (363)
Q Consensus         2 ~~A~~~E~~FF~~~~~w~~l~--~r~G~~~L~~~Ls~lL~~~I~~~LP~l~~eI~~~l~~~~~eL~~Lg~~~~~~~~~~~   79 (363)
                      .+|++.|.+||++||+|+.+.  +++||++|+++|+++|.+||+++||.|+.+|+.++.+++++|++||+++++++.+++
T Consensus       268 ~~~~~~E~~fF~~~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~el~~lg~~~~~~~~~~~  347 (608)
T 3szr_A          268 SEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGVDIPEDENEKM  347 (608)
T ss_dssp             HHHTTTHHHHTTTCTTTSGGGGTCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCSHHHHH
T ss_pred             HHHHHHHHHHHccCccccccCccccccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence            578889999999999999886  599999999999999999999999999999999999999999999999988899999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCC---ccchhhhhhcchhHhcccCCC----CcccCHHhHHHHHHhccCCCCCCCCcHH
Q 017980           80 YTILELCRAFDRIFKEHLDGGRPG---GDRIYGVFDNQLPAALRKLPF----DRHLSLQNVKKVVSEADGYQPHLIAPEQ  152 (363)
Q Consensus        80 ~~L~~~~~~f~~~~~~~l~G~~~g---g~ri~~~f~~~f~~~l~~~~~----~~~~~~~~I~~~i~~~~G~e~~~f~p~~  152 (363)
                      .||++++++|++.++++++|.+..   +.++...++..|..+...+..    .......+|++++++++|+++|+|.|+.
T Consensus       348 ~~l~~~~~~f~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~f~~~~  427 (608)
T 3szr_A          348 FFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQAAAAELPGFVNYR  427 (608)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCSSSCSSCTH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCcCCCccccHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHccCCCCCCCccHH
Confidence            999999999999999999999843   256666666666655443322    2233467899999999999999999999


Q ss_pred             HHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhchhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017980          153 GYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVDMEAS  232 (363)
Q Consensus       153 ~~~~L~~~qi~~w~~pa~~~v~~V~~~~~~~v~~~~~~~~~~~~~p~L~~~v~~~i~~~l~~~~~~~~~~i~~li~~E~~  232 (363)
                      +|+.||++|+++|++||.+|++.|++.+..++..++  .++|.+||+|++++.+++.+++.++.++|.++|..+++||..
T Consensus       428 ~fe~lvk~qi~~l~~Pa~~~v~~V~~~v~~~~~~~~--~~~f~rfp~L~~~~~~~i~~~~~~~~~~a~~~i~~li~mE~~  505 (608)
T 3szr_A          428 TFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVS--IKNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLHFQMEQI  505 (608)
T ss_dssp             HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHH--HHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999998876  368999999999999999999999999999999999999999


Q ss_pred             CCChh-hcccchhhhhhhCCCCCCCCCCCccccCCCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 017980          233 YLTVE-FFRKLPQEVEKAGNPGNSGNTASQAVDRYSDGHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLN  311 (363)
Q Consensus       233 ~i~td-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~aYy~va~krf~D~Vp~~I~~~Lv~~~~~~l~~  311 (363)
                      |++.| +|..                         +...+.+|+.++.|||+||+|||+|+|||+|+|+||+.+.+.|+.
T Consensus       506 ~~~~d~~~~~-------------------------~~~~~~ei~~~l~sY~~iv~~~~~D~vP~~I~~~lv~~~~~~lq~  560 (608)
T 3szr_A          506 VYGAFQSSSA-------------------------TDSSMEEIFQHLMAYHQEASKRISSHIPLIIQFFMLQTYGQQLQK  560 (608)
T ss_dssp             CCCC----------------------------------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             cccCCccccC-------------------------CCccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            87665 3420                         000124699999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhHHhHhhhhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 017980          312 HFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLELYKAARDEIDSVS  360 (363)
Q Consensus       312 ~l~~~L~~~~~~~~~~ll~Ed~~~~~~R~~L~~~~~~L~~A~~~L~~~~  360 (363)
                      +|++.|+..  +.++.||+|||+++.+|+.|++++++|++|.++|..|.
T Consensus       561 ~l~~~l~~~--~~~~~ll~E~~~~~~~R~~l~~~~~~L~~A~~~l~~~~  607 (608)
T 3szr_A          561 AMLQLLQDK--DTYSWLLKERSDTSDKRKFLKERLARLTQARRRLAQFP  607 (608)
T ss_dssp             HHHTTTTCH--HHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHhcc--hhHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999876  68999999999999999999999999999999999874
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A Back     alignment and structure
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens} Back     alignment and structure
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* Back     alignment and structure
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A Back     alignment and structure
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 363
d1jwyb_306 c.37.1.8 (B:) Dynamin G domain {Dictyostelium disc 2e-09
d2akab1299 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus n 3e-09
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} Length = 306 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 56.0 bits (134), Expect = 2e-09
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 4   ARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSI 57
           + + E  YF   P Y  +A + G+ YL+K L+K L   IR  +P +   ++K +
Sbjct: 252 SLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKVSKML 305
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00