Citrus Sinensis ID: 017987

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360---
Protein Sequence
MKQATFRSKILPPSHFIPKTLLKLQPSITTLTFPSKSPNPLTFKTLSCLESQSQSETKTLTLISVLRAIPDWADRVKERGVKQKRTLYSHEKWVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHRPRCIIEFISQSLQLLNLEATKQNMLESKISCFHEGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLTLPIILWDDCHWIVVPATFISAASLFCIEEFVLRGWCPY
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccHHHHHHcccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHcccccccccHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mkqatfrskilppshfipktllklqpsittltfpskspnpltfktlsclesqsqsetkTLTLISVLRAIPDWADRVKERGVKQKRTLYSHEKWVEHRSSLRHVRHLLSSLSSRvilslippVIAFTMVAVVIASYNSaldshllpgflpvlrasslpyqltAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVIsgtdnstdecIKDSLLRYIMAFPVALKghvicdsdvsgdlqdlldaddlaivldskhrprCIIEFISQSLQLLNLEATKQNMLESKISCFHEGIGVCeqlmgipiplsytrLTSRFLVLWHLTlpiilwddchwivvPATFISAASLFCIEEFVLRGWCPY
Flexible Loop (DISEMBL)
mkqatfrskilppshfipKTLLKLQPSITTLTFPSKSPNPLTFKTLSCLESQSQSETKTLTLISVlraipdwadrvkergvkqkrtlyshekwvehrsslRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHRPRCIIEFISQSLQLLNLEATKQNMLESKISCFHEGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLTLPIILWDDCHWIVVPATFISAASLFCIEEFVLRGWCPY
Low Complexity Region (SEG)
MKQATFRSKILPPSHFIPKTLLKLQPSITTLTFPSKSPNPLTFKTLSCLESQSQSETKTLTLISVLRAIPDWADRVKERGVKQKRTLYSHEKWVEHrsslrhvrhllsslssrvilsliPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSGdlqdlldaddlaivldSKHRPRCIIEFISQSLQLLNLEATKQNMLESKISCFHEGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLTLPIILWDDCHWIVVPATFISAASLFCIEEFVLRGWCPY
Disordered region (IsUnstruct)
**************HFIPKTLLKLQPSITTLTF************L***********KTLTLISVLRAIPDWADRVKERGVKQKRTLYSHEKWVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHRPRCIIEFISQSLQLLNLEATKQNMLESKISCFHEGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLTLPIILWDDCHWIVVPATFISAASLFCIEEFVLRGWC**
Disordered Region (DISOPRED)
***********************************************************************************KRTLYSHEKWVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHRPRCIIEFISQSLQLLNLEATKQNMLESKISCFHEGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLTLPIILWDDCHWIVVPATFISAASLFCIEEFVLRGWCPY
Disordered Region (DISEMBL)
MKQATFRSKILPPSHFIPKTLLKLQPSITTLTFPSKSPNPLTFKTLSCLESQSQSETKTLTLISVLRAIPDWADRVKERGVKQKRTLYSHEKWVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHRPRCIIEFISQSLQLLNLEATKQNMLESKISCFHEGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLTLPIILWDDCHWIVVPATFISAASLFCIEEFVLRGWCPY
Disordered Region (DISPRO)
*******SKILPPSHFIPKTLLKLQPSI****************************TKTLTLISVLRAIPDWADRVKERGVKQKRTLYSHEKWVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHRPRCIIEFISQSLQLLNLEATKQNMLESKISCFHEGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLTLPIILWDDCHWIVVPATFISAASLFCIEEFVLRGWCPY
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKQATFRSKILPPSHFIPKTLLKLQPSITTLTFPSKSPNPLTFKTLSCLESQSQSETKTLTLISVLRAIPDWADRVKERGVKQKRTLYSHEKWVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHRPRCIIEFISQSLQLLNLEATKQNMLESKISCFHEGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLTLPIILWDDCHWIVVPATFISAASLFCIEEFVLRGWCPY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	363	2.2.26 [Sep-21-2011]
Q9M2D2	410	UPF0187 protein At3g61320	yes	no	0.936	0.829	0.699	1e-124
O80832	410	UPF0187 protein At2g45870	no	no	0.881	0.780	0.688	1e-120
P72926	307	UPF0187 protein sll1024 O	N/A	no	0.520	0.615	0.265	1e-11
Q8XTY1	306	UPF0187 protein RSc3414 O	yes	no	0.578	0.686	0.238	8e-11
Q8YSU5	307	UPF0187 protein alr2987 O	yes	no	0.644	0.762	0.260	1e-10
Q8XAZ3	304	UPF0187 protein YneE OS=E	N/A	no	0.625	0.746	0.227	4e-07
P76146	304	UPF0187 protein YneE OS=E	N/A	no	0.625	0.746	0.223	6e-07
Q8ZPI0	304	UPF0187 protein YneE OS=S	yes	no	0.520	0.621	0.221	3e-06
Q8Z706	304	UPF0187 protein YneE OS=S	N/A	no	0.520	0.621	0.221	3e-06
Q98E66	309	UPF0187 protein mll4386 O	no	no	0.655	0.770	0.206	7e-05

>sp|Q9M2D2|YU88_ARATH UPF0187 protein At3g61320, chloroplastic OS=Arabidopsis thaliana GN=At3g61320 PE=2 SV=2

 Score =  446 bits (1148), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 240/343 (69%), Positives = 279/343 (81%), Gaps = 3/343 (0%)

Query: 14  SHFIPKTLLKLQPSITTLTFPSKSPNPLTFKTLSCLESQ-SQSETKTLTLISVLRAIPDW 72
           S+F  ++LL+ +  I +  F  KS N    +  S  ES  S  ET T  LI +LRA+PDW
Sbjct: 11  SNFTHRSLLESRFPIFSTGF-RKSVNLKPPRVSSGPESNDSGHETLTDKLIHLLRAVPDW 69

Query: 73  ADRVKERGVKQKRTLYSHEKWVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVI 132
           AD +KERG++QKR+LY+HEKWVEHRSSLRHVRHLLSS SSRVILSLIPPV  FT VAVVI
Sbjct: 70  ADEIKERGMQQKRSLYTHEKWVEHRSSLRHVRHLLSSFSSRVILSLIPPVFFFTSVAVVI 129

Query: 133 ASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIA 192
           ASYNSA+    LPG  P+LR+SSLPYQLTAPALALLLVFRTEASYSR+ +G+KAW  IIA
Sbjct: 130 ASYNSAVALDWLPGIFPILRSSSLPYQLTAPALALLLVFRTEASYSRYEEGRKAWVGIIA 189

Query: 193 GTNDFATMVISGTDNSTDE-CIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDL 251
           GTND A  VI   D+S DE  IKD LLRYI AFPVALK HVI  SD++ DL++L++ADDL
Sbjct: 190 GTNDLARQVICSVDSSGDELIIKDLLLRYIAAFPVALKCHVIYGSDIARDLRNLIEADDL 249

Query: 252 AIVLDSKHRPRCIIEFISQSLQLLNLEATKQNMLESKISCFHEGIGVCEQLMGIPIPLSY 311
           +++L +KHRPRC+IEFISQS+QLL L+  K+++LESK+   HEGIGVCEQLMGIPIPLSY
Sbjct: 250 SLILQAKHRPRCVIEFISQSIQLLKLDDAKRDLLESKMLHLHEGIGVCEQLMGIPIPLSY 309

Query: 312 TRLTSRFLVLWHLTLPIILWDDCHWIVVPATFISAASLFCIEE 354
           TRLTSRFLV WHLTLPIILWD+CHWIVVPATFISAASLFCIEE
Sbjct: 310 TRLTSRFLVFWHLTLPIILWDECHWIVVPATFISAASLFCIEE 352

Arabidopsis thaliana (taxid: 3702)

>sp|O80832|YU87_ARATH UPF0187 protein At2g45870, chloroplastic OS=Arabidopsis thaliana GN=At2g45870 PE=2 SV=1

 Score =  433 bits (1113), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/324 (68%), Positives = 270/324 (83%), Gaps = 4/324 (1%)

Query: 35  SKSPNPLTFK-TLSCLESQSQSETKTLT--LISVLRAIPDWADRVKERGVKQKRTLYSHE 91
           +++P  L FK   SC+ S  +S+   L+  LIS+L+A+P+W+D +KER ++QKR+LY+HE
Sbjct: 29  ARAPKSLHFKFNPSCVSSGPKSDDSPLSEKLISLLKAVPNWSDGIKERRMQQKRSLYTHE 88

Query: 92  KWVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVL 151
            WV HRSSLRH+RH+ SS SSRVILSLIPPV  FT VA++IA YNSA+D   LP F PVL
Sbjct: 89  NWVRHRSSLRHLRHVSSSPSSRVILSLIPPVFFFTTVAILIAGYNSAVDLDWLPDFFPVL 148

Query: 152 RASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDE 211
           RAS LPYQLTAPALALLLVFRTEASYSRF  G+KAW +II+GTND A +VIS    S DE
Sbjct: 149 RASPLPYQLTAPALALLLVFRTEASYSRFEQGRKAWVKIISGTNDLARLVISSVHGSGDE 208

Query: 212 -CIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHRPRCIIEFISQ 270
             I+D+LLRYI+AFPVALK HVI  SD++ DL+++++ DDL+++L SKHRPRC+I+FISQ
Sbjct: 209 LIIRDALLRYIVAFPVALKCHVIYGSDIASDLKNVIEVDDLSLILQSKHRPRCVIQFISQ 268

Query: 271 SLQLLNLEATKQNMLESKISCFHEGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLTLPIIL 330
           SLQLLNL++TK +MLE+K+    EGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLTLP+IL
Sbjct: 269 SLQLLNLDSTKIDMLETKMMQLQEGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLTLPVIL 328

Query: 331 WDDCHWIVVPATFISAASLFCIEE 354
           WDDCHW VVPATFISAASLFCIEE
Sbjct: 329 WDDCHWNVVPATFISAASLFCIEE 352

Arabidopsis thaliana (taxid: 3702)

>sp|P72926|Y1024_SYNY3 UPF0187 protein sll1024 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1024 PE=3 SV=2

 Score = 71.2 bits (173), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 92/196 (46%), Gaps = 7/196 (3%)

Query: 165 LALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSL--LRYIM 222
           L LLLVFRT  +Y RF +G+KAW  ++    + + ++       + +  +D +  L  ++
Sbjct: 68  LGLLLVFRTNTAYERFWEGRKAWGTMVNTIRNLSRIIWVSVAEPSPQAHQDKIKILHLLV 127

Query: 223 AFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHRPRCIIEFISQSLQLL----NLE 278
           AF VA K H +    ++ ++  LL       + D  + P  I  +IS  LQ      N+ 
Sbjct: 128 AFAVATKLH-LRSQPLNEEIWALLPESGYRKLEDLNNPPLEIAFWISNYLQREYDQNNIN 186

Query: 279 ATKQNMLESKISCFHEGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLTLPIILWDDCHWIV 338
           A +   +   +    + +G CE+++  PIPL+Y     + + L+    P  + +  HW  
Sbjct: 187 AYQLTAMLRLVDTMVDVLGSCERILKTPIPLAYAIHLRQLIFLYCFITPFQIVNTLHWAT 246

Query: 339 VPATFISAASLFCIEE 354
                I A ++F IEE
Sbjct: 247 AFVVGIIAFTVFGIEE 262

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q8XTY1|Y3414_RALSO UPF0187 protein RSc3414 OS=Ralstonia solanacearum (strain GMI1000) GN=RSc3414 PE=3 SV=1

 Score = 68.6 bits (166), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 98/218 (44%), Gaps = 8/218 (3%)

Query: 117 SLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEAS 176
           S++P ++    +   I+    A+  H LP     +  S+ P+ L   ALA+ L FR  AS
Sbjct: 19  SVLPQLLPRLFLIFCISLVAMAVHVHWLP---ITVNLSTTPFSLIGIALAVFLGFRNNAS 75

Query: 177 YSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDS 236
           Y R+ + +K W Q++          ++    +         ++ + A P AL+ H +  +
Sbjct: 76  YDRYWEARKLWGQLLNDARSMTRQALTLPRETLAAADVREFVQVLGALPHALR-HQLRRT 134

Query: 237 DVSGDLQDLLDADDLAIVLDSKHRPRCII----EFISQSLQLLNLEATKQNMLESKISCF 292
           D   DL   L A     V+ S++RP  ++    E++ Q  +  +L+A      +  +   
Sbjct: 135 DPRDDLSARLPAPLFERVMASRYRPAALMLWLGEWVRQRSREGSLDAWAVLAFDRNLGSL 194

Query: 293 HEGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLTLPIIL 330
              IG CE+++  P+P +Y+ +  R +  +   LP  L
Sbjct: 195 SNVIGGCERIVSTPLPFAYSVMIHRTVYFFCAALPFGL 232

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

>sp|Q8YSU5|Y2987_NOSS1 UPF0187 protein alr2987 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2987 PE=3 SV=1

 Score = 68.2 bits (165), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 117/261 (44%), Gaps = 27/261 (10%)

Query: 123 IAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPA-------------LALLL 169
           IAF +   VI +    +    L G L      +L YQL  P              L LLL
Sbjct: 11  IAFQLRGSVIGAIYKRVICCALFGVL-----VTLLYQLKIPVSQPILGSVIPSIVLGLLL 65

Query: 170 VFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNST--DECIKDSLLRYIMAFPVA 227
           VFRT  +Y RF +G+KAW  I+  T + A  +    +  +  D   K S+L  ++AF VA
Sbjct: 66  VFRTNTAYDRFWEGRKAWGSIVNNTRNLARQIWVSVEEVSLKDREAKISVLNLLVAFAVA 125

Query: 228 LKGHVICDSDVSGDLQDLLDADDLAIVLDSKHRPRC-----IIEFISQSLQLLNLEATKQ 282
            K H+  +  ++ +L+DL+        L S + P       I +++ Q      L + + 
Sbjct: 126 TKLHLRGEP-INSELEDLISTSRY-FKLKSMNNPPLEVAFWIGDYLQQQYTCKCLNSYQL 183

Query: 283 NMLESKISCFHEGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLTLPIILWDDCHWIVVPAT 342
             ++  ++   + +G CE+++  P+PL+Y+    + L+L+   LP  + +   W      
Sbjct: 184 TSIQELLNNLVDNLGSCERILRTPMPLAYSIHLKQLLLLYCFLLPFQMVESLGWWTGLVV 243

Query: 343 FISAASLFCIEEFVLRGWCPY 363
            + + +LF IE   L    P+
Sbjct: 244 GLVSFTLFGIEAIGLEIENPF 264

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8XAZ3|YNEE_ECO57 UPF0187 protein YneE OS=Escherichia coli O157:H7 GN=yneE PE=3 SV=2

 Score = 56.2 bits (134), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 113/259 (43%), Gaps = 32/259 (12%)

Query: 106 LLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPAL 165
           +LS +SSR++L+ +     F++  + +  + + L           ++ +  P+ +   A+
Sbjct: 20  VLSKISSRLLLNFL-----FSIAVIFMLPWYTHLG----------IKFTLAPFSILGVAI 64

Query: 166 ALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFP 225
           A+ L FR  A Y+R+V+ +K W Q++  +      V +   +S          R  +AF 
Sbjct: 65  AIFLGFRNNAGYARYVEARKLWGQLMIASRSLLREVKTTLPDSAS---VREFARLQIAFA 121

Query: 226 VALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHRPRCIIEFISQSLQLLNLEATKQNM- 284
             L+  +     V   L   L  +DL  VL S      I+  + + L +        ++ 
Sbjct: 122 HCLRMTLRKQPQVEV-LAHYLKTEDLQRVLASNSPANRILLIMGEWLAVQRRNGQLSDIL 180

Query: 285 ---LESKISCFHEGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLTLPIILWDDCHW----- 336
              L  +++     +  CE++   PIP +YT +  R + L+ + LP  L  D H+     
Sbjct: 181 FISLNDRLNDISAVLAGCERIAYTPIPFAYTLILHRTVYLFCIMLPFALVVDLHYMTPFI 240

Query: 337 -IVVPATFISAASLFCIEE 354
            +++  TFI   SL C+ E
Sbjct: 241 SVLISYTFI---SLDCLAE 256

Escherichia coli O157:H7 (taxid: 83334)

>sp|P76146|YNEE_ECOLI UPF0187 protein YneE OS=Escherichia coli (strain K12) GN=yneE PE=3 SV=2

 Score = 55.5 bits (132), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 113/259 (43%), Gaps = 32/259 (12%)

Query: 106 LLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPAL 165
           +LS +SSR++L+ +     F++  + +  + + L           ++ +  P+ +   A+
Sbjct: 20  VLSKISSRLLLNFL-----FSIAVIFMLPWYTHLG----------IKFTLAPFSILGVAI 64

Query: 166 ALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFP 225
           A+ L FR  A Y+R+V+ +K W Q++  +      V +   +S          R  +AF 
Sbjct: 65  AIFLGFRNNAGYARYVEARKLWGQLMIASRSLLREVKTTLPDSAS---VREFARLQIAFA 121

Query: 226 VALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHRPRCIIEFISQSLQLLNLEATKQNM- 284
             L+   +     +  L   L  +DL  VL S      I+  + + L +        ++ 
Sbjct: 122 HCLR-MTLRKQPQAEVLAHYLKTEDLQRVLASNSPANRILLIMGEWLAVQRRNGQLSDIL 180

Query: 285 ---LESKISCFHEGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLTLPIILWDDCHW----- 336
              L  +++     +  CE++   PIP +YT +  R + L+ + LP  L  D H+     
Sbjct: 181 FISLNDRLNDISAVLAGCERIAYTPIPFAYTLILHRTVYLFCIMLPFALVVDLHYMTPFI 240

Query: 337 -IVVPATFISAASLFCIEE 354
            +++  TFI   SL C+ E
Sbjct: 241 SVLISYTFI---SLDCLAE 256

Escherichia coli (strain K12) (taxid: 83333)

>sp|Q8ZPI0|YNEE_SALTY UPF0187 protein YneE OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yneE PE=3 SV=2

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 91/203 (44%), Gaps = 14/203 (6%)

Query: 157 PYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDS 216
           P+ +   A+A+ L FR  A Y+R+V+ +  W Q++  +      V +      DE   + 
Sbjct: 56  PFSILGVAIAIFLGFRNNACYARYVEARHLWGQLMIASRSILREVKTTL---PDERGIED 112

Query: 217 LLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHRPRCIIEFISQSLQLLN 276
            +R  +AF   L+   +     +  L + LD + L  V+ S      I+  + + L +  
Sbjct: 113 FVRLQIAFAHCLR-MTLRRQPQTQVLGNYLDQEALQKVVASHSPANRILLLMGEWLAIRR 171

Query: 277 LEATKQNM----LESKISCFHEGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLTLPIILWD 332
                 ++    L ++++     +  CE++   P+P +YT +  R + L+ + LP  L  
Sbjct: 172 RSGKLSDILFHSLNNRLNDMSSVLAGCERIANTPVPFAYTLILHRTVYLFCIMLPFALVV 231

Query: 333 DCHW------IVVPATFISAASL 349
           D H+      +++  TFI+  +L
Sbjct: 232 DLHYMTPFISVLISYTFIALDAL 254

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

>sp|Q8Z706|YNEE_SALTI UPF0187 protein YneE OS=Salmonella typhi GN=yneE PE=3 SV=2

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 91/203 (44%), Gaps = 14/203 (6%)

Query: 157 PYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDS 216
           P+ +   A+A+ L FR  A Y+R+V+ +  W Q++  +      V +      DE   + 
Sbjct: 56  PFSILGVAIAIFLGFRNNACYARYVEARHLWGQLMIASRSILREVKTTL---PDERGIED 112

Query: 217 LLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHRPRCIIEFISQSLQLLN 276
            +R  +AF   L+   +     +  L + LD + L  V+ S      I+  + + L +  
Sbjct: 113 FVRLQIAFAHCLR-MTLRRQPQTQVLGNYLDQEALQKVVASHSPANRILLLMGEWLAIRR 171

Query: 277 LEATKQNM----LESKISCFHEGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLTLPIILWD 332
                 ++    L ++++     +  CE++   P+P +YT +  R + L+ + LP  L  
Sbjct: 172 RSGKLSDILFHSLNNRLNDMSSVLAGCERIANTPVPFAYTLILHRTVYLFCIMLPFALVV 231

Query: 333 DCHW------IVVPATFISAASL 349
           D H+      +++  TFI+  +L
Sbjct: 232 DLHYMTPFISVLISYTFIALDAL 254

Salmonella typhi (taxid: 90370)

>sp|Q98E66|Y4386_RHILO UPF0187 protein mll4386 OS=Rhizobium loti (strain MAFF303099) GN=mll4386 PE=3 SV=1

 Score = 48.5 bits (114), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/252 (20%), Positives = 102/252 (40%), Gaps = 14/252 (5%)

Query: 105 HLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPA 164
            L   +   V+  ++P +  F + + VI +     +  L  G   +      P+ L    
Sbjct: 19  QLFFIMRGSVVPRILPQIFGFAVYSAVILALARWFELDL--GVFNIT-----PFGLVGVT 71

Query: 165 LALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAF 224
           L++ L FR  A+Y R+ + +K W  ++    + A    + T    D   + +LL   +AF
Sbjct: 72  LSIYLSFRNNAAYDRWWEARKLWGTLVFEIRNLAR---ATTSLIPDPAEQRALLMEALAF 128

Query: 225 PVALKGHVICDSDVSGDLQDLLDADD---LAIVLDSKHRPRCIIEFISQSLQLLNLEATK 281
              L+G  +  +D   D +  +DA           +    R +    +   +  +++   
Sbjct: 129 CHFLRGQ-LRKTDSIKDARAFIDAQAETVAGFANPADEMVRRMGRRANAQRRAGDVDPIG 187

Query: 282 QNMLESKISCFHEGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLTLPIILWDDCHWIVVPA 341
             +L+ +++        CE++ G P+P +YT L  R   +  L LPI L     W     
Sbjct: 188 FRILDERLASITAIQAGCERIAGTPLPFAYTLLVHRTAYIVCLLLPIGLISTTGWATPLF 247

Query: 342 TFISAASLFCIE 353
           T + A + F ++
Sbjct: 248 TALIAYTFFGLD 259

Rhizobium loti (strain MAFF303099) (taxid: 266835)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	363
225454194	419	PREDICTED: UPF0187 protein At3g61320, ch	0.939	0.813	0.724	1e-134
255541568	417	conserved hypothetical protein [Ricinus	0.925	0.805	0.742	1e-133
224127656	348	predicted protein [Populus trichocarpa]	0.807	0.841	0.805	1e-125
22331898	410	Bestrophin-like protein [Arabidopsis tha	0.936	0.829	0.699	1e-123
6850899	406	putative protein [Arabidopsis thaliana]	0.936	0.837	0.699	1e-123
297817446	410	hypothetical protein ARALYDRAFT_907660 [	0.936	0.829	0.699	1e-123
110741398	354	hypothetical protein [Arabidopsis thalia	0.807	0.827	0.761	1e-121
297745270	339	unnamed protein product [Vitis vinifera]	0.754	0.808	0.799	1e-119
297824643	411	hypothetical protein ARALYDRAFT_483727 [	0.931	0.822	0.673	1e-119
15225904	410	Bestrophin-like protein [Arabidopsis tha	0.881	0.780	0.688	1e-119

>gi|225454194|ref|XP_002273844.1| PREDICTED: UPF0187 protein At3g61320, chloroplastic [Vitis vinifera]

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 250/345 (72%), Positives = 290/345 (84%), Gaps = 4/345 (1%)

Query: 13  PSHFIPKTLLKLQPSITTLTFPSKSPNPLTFKTLSCLESQSQSE---TKTLTLISVLRAI 69
           P++  P + LK  P+   L  PSK P  L+F+  S   + S      T+ LTLIS+LR +
Sbjct: 11  PTNLAPYSSLKTIPNFHFLPLPSK-PTKLSFRVFSSRSADSPPPPSSTQNLTLISILRTV 69

Query: 70  PDWADRVKERGVKQKRTLYSHEKWVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVA 129
           PDWAD +KERG++QKR+LY+HE WVEHRSS RHVRHLLSS SSRVILSLIPPVIAFT VA
Sbjct: 70  PDWADAIKERGMQQKRSLYNHETWVEHRSSRRHVRHLLSSFSSRVILSLIPPVIAFTSVA 129

Query: 130 VVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQ 189
           V++ASYNSA+  H LP F P+LRASSLPYQLTAPALALLLVFRTEASYSRF +G+KAWT+
Sbjct: 130 VIVASYNSAVTFHWLPEFFPLLRASSLPYQLTAPALALLLVFRTEASYSRFEEGRKAWTK 189

Query: 190 IIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDAD 249
           IIAGTNDFA  V++G ++S D  +K +LL+YIMAFPVALK HVI  SD+  DLQ+LL+ D
Sbjct: 190 IIAGTNDFARQVVAGVESSGDALLKKALLQYIMAFPVALKCHVIYGSDIRQDLQNLLEVD 249

Query: 250 DLAIVLDSKHRPRCIIEFISQSLQLLNLEATKQNMLESKISCFHEGIGVCEQLMGIPIPL 309
           DLA+VL SKHRPRCIIEFISQSLQLLNL+  K+++LESK+SCFHEGIGVCEQLMGIPIPL
Sbjct: 250 DLAVVLSSKHRPRCIIEFISQSLQLLNLDDAKRHVLESKLSCFHEGIGVCEQLMGIPIPL 309

Query: 310 SYTRLTSRFLVLWHLTLPIILWDDCHWIVVPATFISAASLFCIEE 354
           SYTRLTSRFLVLWHLTLPIILW+DC+WIVVPATFISAASLFCIEE
Sbjct: 310 SYTRLTSRFLVLWHLTLPIILWEDCNWIVVPATFISAASLFCIEE 354

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541568|ref|XP_002511848.1| conserved hypothetical protein [Ricinus communis] gi|223549028|gb|EEF50517.1| conserved hypothetical protein [Ricinus communis]

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 256/345 (74%), Positives = 297/345 (86%), Gaps = 9/345 (2%)

Query: 14  SHFIPKTLLKLQPSITTLTFPSKSPN----PLTFKTLSCLESQSQSETKTLTLISVLRAI 69
           S+F PK LL L  +    TFPSK PN     L+ KTL      +  +T TLTLIS+LRAI
Sbjct: 20  SNFTPKILLTLHLT----TFPSK-PNRKKSNLSLKTLCSKPPPNPHKTLTLTLISLLRAI 74

Query: 70  PDWADRVKERGVKQKRTLYSHEKWVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVA 129
           PDW+DR+KERG++QKRTLY+H KWVEHRSSLRH+RHLLSSL SRVILSLIPPVIAFT VA
Sbjct: 75  PDWSDRIKERGMQQKRTLYNHNKWVEHRSSLRHLRHLLSSLQSRVILSLIPPVIAFTSVA 134

Query: 130 VVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQ 189
           V+IASYNSA++ H  PGF PVLRASSLPYQLTAPALALLLVFRTEASYSR+ +G+KAWT+
Sbjct: 135 VIIASYNSAVEMHFFPGFFPVLRASSLPYQLTAPALALLLVFRTEASYSRYEEGRKAWTK 194

Query: 190 IIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDAD 249
           +I+G NDFA  VI+  DNS D  +K++LL+Y++AFPVALK HVI  SD++ DL++LL+ D
Sbjct: 195 VISGVNDFARQVIATVDNSKDAVLKNALLQYVIAFPVALKCHVIYGSDINRDLRNLLEVD 254

Query: 250 DLAIVLDSKHRPRCIIEFISQSLQLLNLEATKQNMLESKISCFHEGIGVCEQLMGIPIPL 309
           DLA++L+S+HRPRCIIEFISQSLQLLNLE +K+++LESKISC HEGIGVCEQLMGIPIPL
Sbjct: 255 DLAMLLNSRHRPRCIIEFISQSLQLLNLEESKRHLLESKISCLHEGIGVCEQLMGIPIPL 314

Query: 310 SYTRLTSRFLVLWHLTLPIILWDDCHWIVVPATFISAASLFCIEE 354
           SYTRLTSRFLVLWHLTLPIILWDDCHWIVVPATFISAASLFCIEE
Sbjct: 315 SYTRLTSRFLVLWHLTLPIILWDDCHWIVVPATFISAASLFCIEE 359

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127656|ref|XP_002320128.1| predicted protein [Populus trichocarpa] gi|222860901|gb|EEE98443.1| predicted protein [Populus trichocarpa]

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 236/293 (80%), Positives = 265/293 (90%)

Query: 62  LISVLRAIPDWADRVKERGVKQKRTLYSHEKWVEHRSSLRHVRHLLSSLSSRVILSLIPP 121
           + S+LRAIPDWADRVKERG+++KR+LY+HEKWVEHRSS RHVRHLLSSLSSRV+LSL+PP
Sbjct: 1   ITSLLRAIPDWADRVKERGMRKKRSLYNHEKWVEHRSSFRHVRHLLSSLSSRVVLSLVPP 60

Query: 122 VIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFV 181
           VIAFT VAVV+ASYNSA++ H LPGF PVLR SSLPYQLTAPALALLLVFRTEASYSRF 
Sbjct: 61  VIAFTSVAVVVASYNSAVEMHFLPGFFPVLRTSSLPYQLTAPALALLLVFRTEASYSRFE 120

Query: 182 DGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSGD 241
           DGK AWT++I+GTNDFA  VISG D S++  +K  LLRYIMAFP+ALK HV   S++  D
Sbjct: 121 DGKTAWTKVISGTNDFARQVISGVDGSSNSALKSELLRYIMAFPIALKCHVTYGSNIGQD 180

Query: 242 LQDLLDADDLAIVLDSKHRPRCIIEFISQSLQLLNLEATKQNMLESKISCFHEGIGVCEQ 301
           LQ+LL+A DLAIVL S+HRPRCIIEFISQ LQLLNL+ + +N+LESKISCFHEGIGVCEQ
Sbjct: 181 LQNLLEAGDLAIVLKSRHRPRCIIEFISQCLQLLNLDESMRNLLESKISCFHEGIGVCEQ 240

Query: 302 LMGIPIPLSYTRLTSRFLVLWHLTLPIILWDDCHWIVVPATFISAASLFCIEE 354
           LMGIPIPLSYTRLTSRFLVLWHLTLPIILWDDCHWIVVP+TFISAASLFCIEE
Sbjct: 241 LMGIPIPLSYTRLTSRFLVLWHLTLPIILWDDCHWIVVPSTFISAASLFCIEE 293

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22331898|ref|NP_191691.2| Bestrophin-like protein [Arabidopsis thaliana] gi|20141056|sp|Q9M2D2.2|YU88_ARATH RecName: Full=UPF0187 protein At3g61320, chloroplastic; Flags: Precursor gi|16604549|gb|AAL24280.1| AT3g61320/T20K12_220 [Arabidopsis thaliana] gi|23296291|gb|AAN12915.1| At3g61320/T20K12_220 [Arabidopsis thaliana] gi|332646666|gb|AEE80187.1| Bestrophin-like protein [Arabidopsis thaliana]

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 240/343 (69%), Positives = 279/343 (81%), Gaps = 3/343 (0%)

Query: 14  SHFIPKTLLKLQPSITTLTFPSKSPNPLTFKTLSCLESQ-SQSETKTLTLISVLRAIPDW 72
           S+F  ++LL+ +  I +  F  KS N    +  S  ES  S  ET T  LI +LRA+PDW
Sbjct: 11  SNFTHRSLLESRFPIFSTGF-RKSVNLKPPRVSSGPESNDSGHETLTDKLIHLLRAVPDW 69

Query: 73  ADRVKERGVKQKRTLYSHEKWVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVI 132
           AD +KERG++QKR+LY+HEKWVEHRSSLRHVRHLLSS SSRVILSLIPPV  FT VAVVI
Sbjct: 70  ADEIKERGMQQKRSLYTHEKWVEHRSSLRHVRHLLSSFSSRVILSLIPPVFFFTSVAVVI 129

Query: 133 ASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIA 192
           ASYNSA+    LPG  P+LR+SSLPYQLTAPALALLLVFRTEASYSR+ +G+KAW  IIA
Sbjct: 130 ASYNSAVALDWLPGIFPILRSSSLPYQLTAPALALLLVFRTEASYSRYEEGRKAWVGIIA 189

Query: 193 GTNDFATMVISGTDNSTDE-CIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDL 251
           GTND A  VI   D+S DE  IKD LLRYI AFPVALK HVI  SD++ DL++L++ADDL
Sbjct: 190 GTNDLARQVICSVDSSGDELIIKDLLLRYIAAFPVALKCHVIYGSDIARDLRNLIEADDL 249

Query: 252 AIVLDSKHRPRCIIEFISQSLQLLNLEATKQNMLESKISCFHEGIGVCEQLMGIPIPLSY 311
           +++L +KHRPRC+IEFISQS+QLL L+  K+++LESK+   HEGIGVCEQLMGIPIPLSY
Sbjct: 250 SLILQAKHRPRCVIEFISQSIQLLKLDDAKRDLLESKMLHLHEGIGVCEQLMGIPIPLSY 309

Query: 312 TRLTSRFLVLWHLTLPIILWDDCHWIVVPATFISAASLFCIEE 354
           TRLTSRFLV WHLTLPIILWD+CHWIVVPATFISAASLFCIEE
Sbjct: 310 TRLTSRFLVFWHLTLPIILWDECHWIVVPATFISAASLFCIEE 352

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6850899|emb|CAB71062.1| putative protein [Arabidopsis thaliana]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 240/343 (69%), Positives = 279/343 (81%), Gaps = 3/343 (0%)

Query: 14  SHFIPKTLLKLQPSITTLTFPSKSPNPLTFKTLSCLESQ-SQSETKTLTLISVLRAIPDW 72
           S+F  ++LL+ +  I +  F  KS N    +  S  ES  S  ET T  LI +LRA+PDW
Sbjct: 7   SNFTHRSLLESRFPIFSTGF-RKSVNLKPPRVSSGPESNDSGHETLTDKLIHLLRAVPDW 65

Query: 73  ADRVKERGVKQKRTLYSHEKWVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVI 132
           AD +KERG++QKR+LY+HEKWVEHRSSLRHVRHLLSS SSRVILSLIPPV  FT VAVVI
Sbjct: 66  ADEIKERGMQQKRSLYTHEKWVEHRSSLRHVRHLLSSFSSRVILSLIPPVFFFTSVAVVI 125

Query: 133 ASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIA 192
           ASYNSA+    LPG  P+LR+SSLPYQLTAPALALLLVFRTEASYSR+ +G+KAW  IIA
Sbjct: 126 ASYNSAVALDWLPGIFPILRSSSLPYQLTAPALALLLVFRTEASYSRYEEGRKAWVGIIA 185

Query: 193 GTNDFATMVISGTDNSTDE-CIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDL 251
           GTND A  VI   D+S DE  IKD LLRYI AFPVALK HVI  SD++ DL++L++ADDL
Sbjct: 186 GTNDLARQVICSVDSSGDELIIKDLLLRYIAAFPVALKCHVIYGSDIARDLRNLIEADDL 245

Query: 252 AIVLDSKHRPRCIIEFISQSLQLLNLEATKQNMLESKISCFHEGIGVCEQLMGIPIPLSY 311
           +++L +KHRPRC+IEFISQS+QLL L+  K+++LESK+   HEGIGVCEQLMGIPIPLSY
Sbjct: 246 SLILQAKHRPRCVIEFISQSIQLLKLDDAKRDLLESKMLHLHEGIGVCEQLMGIPIPLSY 305

Query: 312 TRLTSRFLVLWHLTLPIILWDDCHWIVVPATFISAASLFCIEE 354
           TRLTSRFLV WHLTLPIILWD+CHWIVVPATFISAASLFCIEE
Sbjct: 306 TRLTSRFLVFWHLTLPIILWDECHWIVVPATFISAASLFCIEE 348

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817446|ref|XP_002876606.1| hypothetical protein ARALYDRAFT_907660 [Arabidopsis lyrata subsp. lyrata] gi|297322444|gb|EFH52865.1| hypothetical protein ARALYDRAFT_907660 [Arabidopsis lyrata subsp. lyrata]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 240/343 (69%), Positives = 279/343 (81%), Gaps = 3/343 (0%)

Query: 14  SHFIPKTLLKLQPSITTLTFPSKSPNPLTFKTLSCLES-QSQSETKTLTLISVLRAIPDW 72
           S+F  ++LL+ +  I +  F  KS N    +  S  ES  S  ET T  LI +LRA+PDW
Sbjct: 11  SNFAHRSLLESRFPIFSTGF-RKSVNLKPPRVSSGPESGDSGHETLTEKLILLLRAVPDW 69

Query: 73  ADRVKERGVKQKRTLYSHEKWVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVI 132
           AD +KERG++QKR+LY+HEKWVEHRSSLRHVRHLLSS SSRVILSLIPPV  FT VAVVI
Sbjct: 70  ADEIKERGMQQKRSLYTHEKWVEHRSSLRHVRHLLSSFSSRVILSLIPPVFFFTSVAVVI 129

Query: 133 ASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIA 192
           ASYNSA+    LPG  P+LR+SSLPYQLTAPALALLLVFRTEASYSR+ +G+KAW  IIA
Sbjct: 130 ASYNSAVALDWLPGIFPILRSSSLPYQLTAPALALLLVFRTEASYSRYEEGRKAWVGIIA 189

Query: 193 GTNDFATMVISGTDNSTDE-CIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDL 251
           GTND A  VI   D+S DE  IKD LLRYI AFPVALK HVI  SD++ DL++L++ADDL
Sbjct: 190 GTNDLARQVICSVDSSGDELIIKDLLLRYIAAFPVALKCHVIYGSDIARDLRNLIEADDL 249

Query: 252 AIVLDSKHRPRCIIEFISQSLQLLNLEATKQNMLESKISCFHEGIGVCEQLMGIPIPLSY 311
           +++L +KHRPRC+IEFISQS+QLL L+  K+++LESK+   HEGIGVCEQLMGIPIPLSY
Sbjct: 250 SLILQAKHRPRCVIEFISQSIQLLKLDDAKRDLLESKMLHLHEGIGVCEQLMGIPIPLSY 309

Query: 312 TRLTSRFLVLWHLTLPIILWDDCHWIVVPATFISAASLFCIEE 354
           TRLTSRFLV WHLTLPIILWD+CHWIVVPATFISAASLFCIEE
Sbjct: 310 TRLTSRFLVFWHLTLPIILWDECHWIVVPATFISAASLFCIEE 352

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110741398|dbj|BAF02248.1| hypothetical protein [Arabidopsis thaliana]

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/294 (76%), Positives = 256/294 (87%), Gaps = 1/294 (0%)

Query: 62  LISVLRAIPDWADRVKERGVKQKRTLYSHEKWVEHRSSLRHVRHLLSSLSSRVILSLIPP 121
           LI +LRA+PDWAD +KERG++QKR+LY+HEKWVEHRSSLRHVRHLLSS SSRVILSLIPP
Sbjct: 3   LIHLLRAVPDWADEIKERGMQQKRSLYTHEKWVEHRSSLRHVRHLLSSFSSRVILSLIPP 62

Query: 122 VIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFV 181
           V  FT VAVVIASYNSA+    LPG  P+LR+SSLPYQLTAPALALLLVFRTEASYSR+ 
Sbjct: 63  VFFFTSVAVVIASYNSAVALDWLPGIFPILRSSSLPYQLTAPALALLLVFRTEASYSRYE 122

Query: 182 DGKKAWTQIIAGTNDFATMVISGTDNSTDE-CIKDSLLRYIMAFPVALKGHVICDSDVSG 240
           +G+KAW  IIAGTND A  VI   D+S DE  IKD LLRYI AFPVALK HVI  SD++ 
Sbjct: 123 EGRKAWVGIIAGTNDLARQVICSVDSSGDELIIKDLLLRYIAAFPVALKCHVIYGSDIAR 182

Query: 241 DLQDLLDADDLAIVLDSKHRPRCIIEFISQSLQLLNLEATKQNMLESKISCFHEGIGVCE 300
           DL++L++ADDL+++L +KHRPRC+IEFISQS+QLL L+  K+++LESK+   HEGIGVCE
Sbjct: 183 DLRNLIEADDLSLILQAKHRPRCVIEFISQSIQLLKLDDAKRDLLESKMLHLHEGIGVCE 242

Query: 301 QLMGIPIPLSYTRLTSRFLVLWHLTLPIILWDDCHWIVVPATFISAASLFCIEE 354
           QLMGIPIPLSYTRLTSRFLV WHLTLPIILWD+CHWIVVPATFISAASLFCIEE
Sbjct: 243 QLMGIPIPLSYTRLTSRFLVFWHLTLPIILWDECHWIVVPATFISAASLFCIEE 296

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745270|emb|CBI40350.3| unnamed protein product [Vitis vinifera]

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/274 (79%), Positives = 248/274 (90%)

Query: 81  VKQKRTLYSHEKWVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALD 140
           ++QKR+LY+HE WVEHRSS RHVRHLLSS SSRVILSLIPPVIAFT VAV++ASYNSA+ 
Sbjct: 1   MQQKRSLYNHETWVEHRSSRRHVRHLLSSFSSRVILSLIPPVIAFTSVAVIVASYNSAVT 60

Query: 141 SHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATM 200
            H LP F P+LRASSLPYQLTAPALALLLVFRTEASYSRF +G+KAWT+IIAGTNDFA  
Sbjct: 61  FHWLPEFFPLLRASSLPYQLTAPALALLLVFRTEASYSRFEEGRKAWTKIIAGTNDFARQ 120

Query: 201 VISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHR 260
           V++G ++S D  +K +LL+YIMAFPVALK HVI  SD+  DLQ+LL+ DDLA+VL SKHR
Sbjct: 121 VVAGVESSGDALLKKALLQYIMAFPVALKCHVIYGSDIRQDLQNLLEVDDLAVVLSSKHR 180

Query: 261 PRCIIEFISQSLQLLNLEATKQNMLESKISCFHEGIGVCEQLMGIPIPLSYTRLTSRFLV 320
           PRCIIEFISQSLQLLNL+  K+++LESK+SCFHEGIGVCEQLMGIPIPLSYTRLTSRFLV
Sbjct: 181 PRCIIEFISQSLQLLNLDDAKRHVLESKLSCFHEGIGVCEQLMGIPIPLSYTRLTSRFLV 240

Query: 321 LWHLTLPIILWDDCHWIVVPATFISAASLFCIEE 354
           LWHLTLPIILW+DC+WIVVPATFISAASLFCIEE
Sbjct: 241 LWHLTLPIILWEDCNWIVVPATFISAASLFCIEE 274

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824643|ref|XP_002880204.1| hypothetical protein ARALYDRAFT_483727 [Arabidopsis lyrata subsp. lyrata] gi|297326043|gb|EFH56463.1| hypothetical protein ARALYDRAFT_483727 [Arabidopsis lyrata subsp. lyrata]

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 233/346 (67%), Positives = 281/346 (81%), Gaps = 8/346 (2%)

Query: 14  SHFIPKTLLKLQPSITTLTFPSKSPNPLTFK-TLSCLESQSQSETKTLT--LISVLRAIP 70
           S+F  ++ LK  P + +    +++P  L FK   SCL S S+S+   L+  LIS+L+A+P
Sbjct: 11  SNFTNRSFLK--PRLCS-GISARAPKSLHFKFNPSCLSSGSKSDDSPLSEKLISLLKAVP 67

Query: 71  DWADRVKERGVKQKRTLYSHEKWVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAV 130
           +W+D +KER ++QKR+LY+HE WV HRSSLRH+RH+ SS SSRVILSLIPPV  FT VA 
Sbjct: 68  NWSDGIKERRMEQKRSLYTHENWVRHRSSLRHLRHVSSSPSSRVILSLIPPVFFFTTVAF 127

Query: 131 VIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQI 190
           +IA YNSA+D   LP F PVLRAS LPYQLTAPALALLLVFRTEASYSRF  G+KAW +I
Sbjct: 128 LIAGYNSAVDLDWLPDFFPVLRASPLPYQLTAPALALLLVFRTEASYSRFEQGRKAWVKI 187

Query: 191 IAGTNDFATMVISGTDNSTDE-CIKDSLLRYIMAFPVALK-GHVICDSDVSGDLQDLLDA 248
           I+GTND A +VIS    S DE  I+D+LLRYI+AFPVALK  HVI  SD++ DLQ++++A
Sbjct: 188 ISGTNDLARLVISSVHGSGDELVIRDALLRYIVAFPVALKVCHVIYGSDIATDLQNVIEA 247

Query: 249 DDLAIVLDSKHRPRCIIEFISQSLQLLNLEATKQNMLESKISCFHEGIGVCEQLMGIPIP 308
           DDL+++L SKHRPRC+I+FISQSLQLLNL++TK +MLESK+    EGIGVCEQLMGIPIP
Sbjct: 248 DDLSLILQSKHRPRCVIQFISQSLQLLNLDSTKIDMLESKMMQLQEGIGVCEQLMGIPIP 307

Query: 309 LSYTRLTSRFLVLWHLTLPIILWDDCHWIVVPATFISAASLFCIEE 354
           LSYTRLTSRFLVLWHLTLP+ILWDDCHW VVPATFISAASLFCIEE
Sbjct: 308 LSYTRLTSRFLVLWHLTLPVILWDDCHWNVVPATFISAASLFCIEE 353

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225904|ref|NP_182111.1| Bestrophin-like protein [Arabidopsis thaliana] gi|20140947|sp|O80832.1|YU87_ARATH RecName: Full=UPF0187 protein At2g45870, chloroplastic; Flags: Precursor gi|3386607|gb|AAC28537.1| hypothetical protein [Arabidopsis thaliana] gi|18491251|gb|AAL69450.1| At2g45870/F4I18.15 [Arabidopsis thaliana] gi|330255518|gb|AEC10612.1| Bestrophin-like protein [Arabidopsis thaliana]

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/324 (68%), Positives = 270/324 (83%), Gaps = 4/324 (1%)

Query: 35  SKSPNPLTFK-TLSCLESQSQSETKTLT--LISVLRAIPDWADRVKERGVKQKRTLYSHE 91
           +++P  L FK   SC+ S  +S+   L+  LIS+L+A+P+W+D +KER ++QKR+LY+HE
Sbjct: 29  ARAPKSLHFKFNPSCVSSGPKSDDSPLSEKLISLLKAVPNWSDGIKERRMQQKRSLYTHE 88

Query: 92  KWVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVL 151
            WV HRSSLRH+RH+ SS SSRVILSLIPPV  FT VA++IA YNSA+D   LP F PVL
Sbjct: 89  NWVRHRSSLRHLRHVSSSPSSRVILSLIPPVFFFTTVAILIAGYNSAVDLDWLPDFFPVL 148

Query: 152 RASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDE 211
           RAS LPYQLTAPALALLLVFRTEASYSRF  G+KAW +II+GTND A +VIS    S DE
Sbjct: 149 RASPLPYQLTAPALALLLVFRTEASYSRFEQGRKAWVKIISGTNDLARLVISSVHGSGDE 208

Query: 212 -CIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHRPRCIIEFISQ 270
             I+D+LLRYI+AFPVALK HVI  SD++ DL+++++ DDL+++L SKHRPRC+I+FISQ
Sbjct: 209 LIIRDALLRYIVAFPVALKCHVIYGSDIASDLKNVIEVDDLSLILQSKHRPRCVIQFISQ 268

Query: 271 SLQLLNLEATKQNMLESKISCFHEGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLTLPIIL 330
           SLQLLNL++TK +MLE+K+    EGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLTLP+IL
Sbjct: 269 SLQLLNLDSTKIDMLETKMMQLQEGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLTLPVIL 328

Query: 331 WDDCHWIVVPATFISAASLFCIEE 354
           WDDCHW VVPATFISAASLFCIEE
Sbjct: 329 WDDCHWNVVPATFISAASLFCIEE 352

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	363
TAIR|locus:2098881	410	AT3G61320 "AT3G61320" [Arabido	0.936	0.829	0.612	4.9e-101
TAIR|locus:2050740	410	AT2G45870 "AT2G45870" [Arabido	0.881	0.780	0.611	1.9e-99
UNIPROTKB|Q602K6	277	MCA3057 "Putative uncharacteri	0.269	0.353	0.276	3.3e-08
ASPGD|ASPL0000042484	499	BEST1 [Emericella nidulans (ta	0.289	0.210	0.256	1.7e-06
UNIPROTKB|Q4KAA3	299	PFL_3728 "Uncharacterized prot	0.619	0.752	0.203	1.8e-06
UNIPROTKB|Q87U13	295	PSPTO_5502 "Uncharacterized pr	0.545	0.671	0.223	1.4e-05
UNIPROTKB|P76146	304	yneE "conserved inner membrane	0.134	0.161	0.3	9e-05
UNIPROTKB|Q4KBN5	299	yneE "Swarming motility protei	0.617	0.749	0.200	9.3e-05
ASPGD|ASPL0000000571	390	BEST2 [Emericella nidulans (ta	0.187	0.174	0.297	0.00016
UNIPROTKB|Q887D1	314	PSPTO_1371 "Conserved effector	0.504	0.582	0.216	0.00038

TAIR|locus:2098881 AT3G61320 "AT3G61320" [Arabidopsis thaliana (taxid:3702)]

 Score = 1002 (357.8 bits), Expect = 4.9e-101, P = 4.9e-101
 Identities = 210/343 (61%), Positives = 242/343 (70%)

Query:    14 SHFIPKTLLKLQPSITTLTFPSKSPNPLTFKTLSCLESQ-SQSETKTLTLISVLRAIPDW 72
             S+F  ++LL+ +  I +  F  KS N    +  S  ES  S  ET T  LI +LRA+PDW
Sbjct:    11 SNFTHRSLLESRFPIFSTGF-RKSVNLKPPRVSSGPESNDSGHETLTDKLIHLLRAVPDW 69

Query:    73 ADRVKERGVKQKRTLYSHEKWVEHXXXXXXXXXXXXXXXXXXXXXXXPPVIAFTMVAVVI 132
             AD +KERG++QKR+LY+HEKWVEH                       PPV  FT VAVVI
Sbjct:    70 ADEIKERGMQQKRSLYTHEKWVEHRSSLRHVRHLLSSFSSRVILSLIPPVFFFTSVAVVI 129

Query:   133 ASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIA 192
             ASYNSA+    LPG  P+LR+SSLPYQLTAPALALLLVFRTEASYSR+ +G+KAW  IIA
Sbjct:   130 ASYNSAVALDWLPGIFPILRSSSLPYQLTAPALALLLVFRTEASYSRYEEGRKAWVGIIA 189

Query:   193 GTNDFATMVISGTDNSTDECI-KDSLLRYIMAFPVALKGHVICDSDVSGXXXXXXXXXXX 251
             GTND A  VI   D+S DE I KD LLRYI AFPVALK HVI  SD++            
Sbjct:   190 GTNDLARQVICSVDSSGDELIIKDLLLRYIAAFPVALKCHVIYGSDIARDLRNLIEADDL 249

Query:   252 XXXXXSKHRPRCIIEFISQSLQLLNLEATKQNMLESKISCFHEGIGVCEQLMGIPIPLSY 311
                  +KHRPRC+IEFISQS+QLL L+  K+++LESK+   HEGIGVCEQLMGIPIPLSY
Sbjct:   250 SLILQAKHRPRCVIEFISQSIQLLKLDDAKRDLLESKMLHLHEGIGVCEQLMGIPIPLSY 309

Query:   312 TRLTSRFLVLWHLTLPIILWDDCHWIVVPATFISAASLFCIEE 354
             TRLTSRFLV WHLTLPIILWD+CHWIVVPATFISAASLFCIEE
Sbjct:   310 TRLTSRFLVFWHLTLPIILWDECHWIVVPATFISAASLFCIEE 352

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2050740 AT2G45870 "AT2G45870" [Arabidopsis thaliana (taxid:3702)]

 Score = 987 (352.5 bits), Expect = 1.9e-99, P = 1.9e-99
 Identities = 198/324 (61%), Positives = 235/324 (72%)

Query:    35 SKSPNPLTFK-TLSCLESQSQSETKTLT--LISVLRAIPDWADRVKERGVKQKRTLYSHE 91
             +++P  L FK   SC+ S  +S+   L+  LIS+L+A+P+W+D +KER ++QKR+LY+HE
Sbjct:    29 ARAPKSLHFKFNPSCVSSGPKSDDSPLSEKLISLLKAVPNWSDGIKERRMQQKRSLYTHE 88

Query:    92 KWVEHXXXXXXXXXXXXXXXXXXXXXXXPPVIAFTMVAVVIASYNSALDSHLLPGFLPVL 151
              WV H                       PPV  FT VA++IA YNSA+D   LP F PVL
Sbjct:    89 NWVRHRSSLRHLRHVSSSPSSRVILSLIPPVFFFTTVAILIAGYNSAVDLDWLPDFFPVL 148

Query:   152 RASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDE 211
             RAS LPYQLTAPALALLLVFRTEASYSRF  G+KAW +II+GTND A +VIS    S DE
Sbjct:   149 RASPLPYQLTAPALALLLVFRTEASYSRFEQGRKAWVKIISGTNDLARLVISSVHGSGDE 208

Query:   212 CI-KDSLLRYIMAFPVALKGHVICDSDVSGXXXXXXXXXXXXXXXXSKHRPRCIIEFISQ 270
              I +D+LLRYI+AFPVALK HVI  SD++                 SKHRPRC+I+FISQ
Sbjct:   209 LIIRDALLRYIVAFPVALKCHVIYGSDIASDLKNVIEVDDLSLILQSKHRPRCVIQFISQ 268

Query:   271 SLQLLNLEATKQNMLESKISCFHEGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLTLPIIL 330
             SLQLLNL++TK +MLE+K+    EGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLTLP+IL
Sbjct:   269 SLQLLNLDSTKIDMLETKMMQLQEGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLTLPVIL 328

Query:   331 WDDCHWIVVPATFISAASLFCIEE 354
             WDDCHW VVPATFISAASLFCIEE
Sbjct:   329 WDDCHWNVVPATFISAASLFCIEE 352

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009909 "regulation of flower development" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

UNIPROTKB|Q602K6 MCA3057 "Putative uncharacterized protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 103 (41.3 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
 Identities = 29/105 (27%), Positives = 51/105 (48%)

Query:   257 SKHRP-RCIIEFISQSLQLLN---LEATKQNMLESKISCFHEGIGVCEQLMGIPIPLSYT 312
             ++HRP R   +  +++ +L +   L   +   L   +S F E  G CE++   PIP SY+
Sbjct:   136 AEHRPNRIAAQLFAETARLRDRGDLSGDQLLCLNPDLSAFAEVCGGCERIQKTPIPYSYS 195

Query:   313 RLTSRFLVLWHLTLPIILWDDCH-W--IVVPATFISAASLFCIEE 354
                 +F+ L+ +++P     + H W  ++    F   ASL  I E
Sbjct:   196 LFLKKFIFLYIVSMPFCFVPEFHYWTALITTLVFYVLASLELIAE 240

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000042484 BEST1 [Emericella nidulans (taxid:162425)]

 Score = 95 (38.5 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
 Identities = 29/113 (25%), Positives = 55/113 (48%)

Query:   132 IASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQII 191
             +A +++ +   L+  F+  L   ++   +    + L L FR+  +Y R+ DG+K W+ ++
Sbjct:   120 VAGWSTCIT--LISRFVYRLSVDNILLTVLGFVVGLSLSFRSSTAYERWADGRKYWSLLV 177

Query:   192 AGTNDFATMVISGTDNSTDECIKDSLLR------YIMAFPVALKGHVICDSDV 238
               + + +  +   T     E  K+ LLR       I+AF VALK  +  + DV
Sbjct:   178 QTSRNLSRTIWINTLEREGELGKEDLLRKLTAINLILAFAVALKHKLRFEPDV 230

GO:0006820 "anion transport" evidence=IDA

GO:0008509 "anion transmembrane transporter activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005253 "anion channel activity" evidence=IDA

UNIPROTKB|Q4KAA3 PFL_3728 "Uncharacterized protein" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 135 (52.6 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 47/231 (20%), Positives = 91/231 (39%)

Query:   123 IAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVD 182
             IA   + V + +    L   L P +   + A+  P+ L   +L++ + FR  A Y R+ +
Sbjct:    24 IALRSLLVTLLASAIVLIETLHPAYFSKVNAT--PFTLLGLSLSIFMSFRNNACYDRWYE 81

Query:   183 GKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSGXX 242
              +KA   ++         +I  T    D   + ++LR +  F  ALK  +  + ++S   
Sbjct:    82 ARKALGTVVTEVRS----MIRETQVLEDTRARSAILRDLCGFAHALKARLRREDELSAAE 137

Query:   243 XXXXXXXXXXXXXXSKHRPRCIIEFISQSLQLLNLEATKQNMLESKISCFHEGIGVCEQL 302
                                R I    S   Q   L   +  +L ++++        CE++
Sbjct:   138 TWLSQLPPASTSNLPDSLLRQIARQCSDQAQAGRLSEWRYLLLANQLAAITGAQSTCERI 197

Query:   303 MGIPIPLSYTRLTSRFLVLWHLTLPIILWDDCHWIVVPATFISAASLFCIE 353
                P+P  YT L  R   ++ + LP  + +   W+    T I + + F ++
Sbjct:   198 KATPLPFPYTLLLHRTSYMFCILLPFAMAEPLGWLTPIFTAIVSYTFFGLD 248

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q87U13 PSPTO_5502 "Uncharacterized protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 127 (49.8 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 46/206 (22%), Positives = 85/206 (41%)

Query:   155 SLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVIS--GTDNSTDEC 212
             SLP  L   AL +L  FR  ++Y+R+ + +  W  ++  +  FA  V++    DN  +  
Sbjct:    49 SLPLTLLGSALVVLTSFRNSSAYNRWWEARTLWGAMVNSSRSFARQVLTLVEDDNGINP- 107

Query:   213 IKDSLLRYIMAFPVALKGHVICDSDVSGXXXXXXXXXXXXXXXXSKHRPRCIIE----FI 268
             +K  LLR  +A+   L  H +   +                   + + P  ++      +
Sbjct:   108 VKAILLRRHVAYVKCLSAH-LKGVEPGDEIQMLIPREEFERRRDTNNFPNDLLNTSAALL 166

Query:   269 SQSLQLLNLEATKQNMLESKISCFHEGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLTLPI 328
             ++  Q   L++ +   LES +       G  E++   P+P  Y      F+ L+ L +PI
Sbjct:   167 AKEYQAGRLDSIRLARLESTMVDLSNCQGGMERIANTPLPYPYVAFPRLFITLFCLIVPI 226

Query:   329 ILWDDCHWIVVPATFISAASLFCIEE 354
              L +   W    A+ +    L  IE+
Sbjct:   227 GLVETLGWFTPLASTVVGFMLLAIEK 252

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|P76146 yneE "conserved inner membrane protein" [Escherichia coli K-12 (taxid:83333)]

 Score = 85 (35.0 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
 Identities = 15/50 (30%), Positives = 31/50 (62%)

Query:   143 LLPGFLPV-LRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQII 191
             +LP +  + ++ +  P+ +   A+A+ L FR  A Y+R+V+ +K W Q++
Sbjct:    41 MLPWYTHLGIKFTLAPFSILGVAIAIFLGFRNNAGYARYVEARKLWGQLM 90

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006928 "cellular component movement" evidence=IMP

UNIPROTKB|Q4KBN5 yneE "Swarming motility protein YneE" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 120 (47.3 bits), Expect = 9.3e-05, P = 9.3e-05
 Identities = 47/234 (20%), Positives = 95/234 (40%)

Query:   123 IAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVD 182
             IA   V V + +    L   L P +   + A+  P+ L   +L++ + FR  A Y R+ +
Sbjct:    24 IALRCVLVTLLASVIVLVETLQPSYFSKVNAT--PFTLLGLSLSIFMSFRNNACYDRWWE 81

Query:   183 GKKAWTQIIAGTNDFA--TMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSG 240
             G+K   Q+I         +++I G         ++ +LR +  F  +L   +  + + + 
Sbjct:    82 GRKQLGQLIIEVRSLIRESLIIDGHPE------REGMLRDLCGFAHSLIARLRHEDEAAA 135

Query:   241 XXXXXXXXXXXXXXXXSKHRPRCIIEFISQSLQLLNLEATKQNMLESKISCFHEGIGVCE 300
                             +  + + I +  SQ  Q   +   +   LE+++         CE
Sbjct:   136 LRPWAQASLDPGHPNLTDAQLQRIGQRCSQWAQQGLISEWRYTQLETRLVSLSLVQAACE 195

Query:   301 QLMGIPIPLSYTRLTSRFLVLWHLTLPIILWDDCHWIVVPATFISAASLFCIEE 354
             ++   P+P  YT L  R + L+ + LP  + +   W+    T I + +   ++E
Sbjct:   196 RIQNTPLPFPYTLLLHRTIYLFCILLPFAMAEPLGWLTPIFTAIVSYTFLGLDE 249

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000000571 BEST2 [Emericella nidulans (taxid:162425)]

 Score = 82 (33.9 bits), Expect = 0.00016, Sum P(2) = 0.00016
 Identities = 22/74 (29%), Positives = 35/74 (47%)

Query:   165 LALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISG---TDNSTDECIKDSL---L 218
             + L+LVFR + SY+RF DG+   T I     +    ++S    T        K  +   +
Sbjct:    74 VGLMLVFRNQTSYNRFWDGRNGMTTIHTTIRNLVRTILSNAYSTARPPTPAEKHDIERTV 133

Query:   219 RYIMAFPVALKGHV 232
             R + A P A+K H+
Sbjct:   134 RILTAIPFAVKNHL 147

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005253 "anion channel activity" evidence=ISA

UNIPROTKB|Q887D1 PSPTO_1371 "Conserved effector locus protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 115 (45.5 bits), Expect = 0.00038, P = 0.00038
 Identities = 42/194 (21%), Positives = 79/194 (40%)

Query:   156 LPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDEC--- 212
             +P  L   AL +L+ FR  ++Y+R+ + +  W  ++  +  F   V++  D   D+    
Sbjct:    50 MPLTLLCSALIVLISFRNSSAYNRWWEARTLWGAMVNTSRSFGRQVLTLIDGERDDLNNP 109

Query:   213 IKDSLLRYIMAFPVALKGHVICDSDV-SGXXXXXXXXXXXXXXXXSKHRPRCIIE----F 267
             +K  L +  +A+  AL+ H+    DV +                 S + P  I+      
Sbjct:   110 VKAILFQRHVAYLRALRAHL--KGDVKTAKLDGLLSPDEIQRASQSNNFPNDILNGSAAV 167

Query:   268 ISQSLQLLNLEATKQNMLESKISCFHEGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLTLP 327
             ISQ+      ++ +   LES +       G  E++   P+P  Y      F  L+ + +P
Sbjct:   168 ISQAFAAGQFDSIRLTRLESTMVDLSNCQGGMERIANTPLPYPYVYFPRLFSTLFCILMP 227

Query:   328 IILWDDCHWIVVPA 341
             + +     W   PA
Sbjct:   228 LSMVTTLGWFT-PA 240


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.136   0.420    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      363       324   0.00086  116 3  11 22  0.47    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  622 (66 KB)
  Total size of DFA:  234 KB (2126 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.06u 0.08s 24.14t   Elapsed:  00:00:03
  Total cpu time:  24.06u 0.08s 24.14t   Elapsed:  00:00:03
  Start:  Fri May 10 09:34:13 2013   End:  Fri May 10 09:34:16 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M2D2	YU88_ARATH	No assigned EC number	0.6997	0.9366	0.8292	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00026838001 SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (419 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	363
pfam01062	284	pfam01062, Bestrophin, Bestrophin, RFP-TM, chlorid	3e-50
COG3781	306	COG3781, COG3781, Predicted membrane protein [Func	7e-23

>gnl|CDD|216274 pfam01062, Bestrophin, Bestrophin, RFP-TM, chloride channel

 Score =  169 bits (430), Expect = 3e-50
 Identities = 56/258 (21%), Positives = 113/258 (43%), Gaps = 15/258 (5%)

Query: 101 RHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQL 160
            +   LL      ++ S+ P ++ F +++ ++ +         +   L        P+ L
Sbjct: 7   PNFFRLLFRWRGSILKSIWPELLVFLLLSALVTAIY-------IFELLAKYCLPIAPFTL 59

Query: 161 TAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRY 220
              AL+  L FR  A+Y R+ + +K W  ++  +   A  V +      +   +  LLR 
Sbjct: 60  IGLALSFFLGFRNNAAYDRWWEARKLWGALVNWSRSLARQVSTLIPGDDE---RRRLLRR 116

Query: 221 IMAFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHRPRCIIEFISQSLQLL----N 276
            +A+  AL+   +     + DL+ LL  ++   +L S + P  ++   + SL        
Sbjct: 117 TIAYAHALRAL-LRGISPAVDLEHLLSEEEEEKLLQSSNPPYALLIVWAASLAKARREGR 175

Query: 277 LEATKQNMLESKISCFHEGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLTLPIILWDDCHW 336
           ++  +   L+ +++   + +G CE++   PIPL+YT+L  R + L+ L LP  L D   W
Sbjct: 176 IDDIQLVQLDEELNELRDALGGCERIDWTPIPLAYTQLVHRAVYLYCLLLPFGLQDTLGW 235

Query: 337 IVVPATFISAASLFCIEE 354
                T +     F +++
Sbjct: 236 FTPLFTVLIFYFFFGLDK 253

Bestrophin is a 68-kDa basolateral plasma membrane protein expressed in retinal pigment epithelial cells (RPE). It is encoded by the VMD2 gene, which is mutated in Best macular dystrophy, a disease characterized by a depressed light peak in the electrooculogram. VMD2 encodes a 585-amino acid protein with an approximate mass of 68 kDa which has been designated bestrophin. Bestrophin shares homology with the Caenorhabditis elegans RFP gene family, named for the presence of a conserved arginine (R), phenylalanine (F), proline (P), amino acid sequence motif. Bestrophin is a plasma membrane protein, localised to the basolateral surface of RPE cells consistent with a role for bestrophin in the generation or regulation of the EOG light peak. Bestrophin and other RFP family members represent a new class of chloride channels, indicating a direct role for bestrophin in generating the light peak. The VMD2 gene underlying Best disease was shown to represent the first human member of the RFP-TM protein family. More than 97% of the disease-causing mutations are located in the N-terminal RFP-TM domain implying important functional properties. The bestrophins are four-pass transmembrane chloride-channel proteins, and the RFP-TM or bestrophin domain extends from the N-terminus through approximately 350 amino acids and contains all of the TM domains as well as nearly all reported disease causing mutations. Interestingly, the RFP motif is not conserved evolutionarily back beyond Metazoa, neither is it in plant members. Length = 284

>gnl|CDD|226304 COG3781, COG3781, Predicted membrane protein [Function unknown]

 Score = 96.7 bits (241), Expect = 7e-23
 Identities = 59/245 (24%), Positives = 110/245 (44%), Gaps = 12/245 (4%)

Query: 114 VILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRT 173
           V+  ++P ++   + ++V+    +A+     P  +P       P+ +   ALA+ L FR 
Sbjct: 20  VLPKILPRLLLCFLFSLVV----TAVLPWYTPLSIPFTLT---PFSIPGIALAIFLGFRN 72

Query: 174 EASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVI 233
            A+Y R+ + +K W Q++    + A  + +    + D       LR ++AF  AL+   +
Sbjct: 73  NAAYDRYWEARKLWGQLVNAIRNLARQIWTLVPETLDSADVREFLRLLVAFAHALRLQ-L 131

Query: 234 CDSDVSGDLQDLLDADDLAIVLDSKHRPRCIIEFISQSLQLL----NLEATKQNMLESKI 289
                + DL  LL   D   VL S + P  I  ++ + LQ       L+A +   L+ ++
Sbjct: 132 RKQPQNEDLAALLPTSDYEKVLASNNPPLEIALWMGEWLQQQRRNGQLDAIQFTSLDRRL 191

Query: 290 SCFHEGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLTLPIILWDDCHWIVVPATFISAASL 349
           +     +G CE++   PIP +YT    R + L+   LP  L +   W     + + A + 
Sbjct: 192 NSISAVLGGCERIAYTPIPFAYTLHLHRTVYLFCFLLPFGLVETLGWATPFFSVLIAYTF 251

Query: 350 FCIEE 354
           F +E 
Sbjct: 252 FGLEA 256

Length = 306

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	363
COG3781	306	Predicted membrane protein [Function unknown]	100.0
PF01062	293	Bestrophin: Bestrophin, RFP-TM, chloride channel;	100.0
KOG3547	450	consensus Bestrophin (Best vitelliform macular dys	98.63
PF14023	209	DUF4239: Protein of unknown function (DUF4239)	97.31

>COG3781 Predicted membrane protein [Function unknown]

Probab=100.00  E-value=3.1e-69  Score=502.45  Aligned_cols=255  Identities=24%  Similarity=0.381  Sum_probs=239.5

Q ss_pred             hhHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHhccccccCCCCcccccccCCchhHhHHHHHHHHHHhcchhHHHHH
Q 017987          101 RHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRF  180 (363)
Q Consensus       101 R~~~~ll~~~~gsVl~~i~~~vl~~~~~a~~V~~l~~~~~~~~~p~~~p~l~~~~~p~sllg~aLsLLLvFRtNsAY~Rw  180 (363)
                      .||.++++.++|||+++|.|+++.++++|++|.+++...    .|.   ......+||++.|++||++||||||+|||||
T Consensus         7 ~hw~r~~f~~rGSVl~~i~~rll~~~~fS~~v~~~~~w~----~~~---~i~~~~tpf~i~giaLai~L~FRnNaaYdR~   79 (306)
T COG3781           7 QHWLRLIFVWRGSVLPKILPRLLLCFLFSLVVTAVLPWY----TPL---SIPFTLTPFSIPGIALAIFLGFRNNAAYDRY   79 (306)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhh----ccc---cceeccCcchhHHHHHHHHHhhccchHHHHH
Confidence            467789999999999999999999999999999887632    121   2334568999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhhcCCHHHHHHHhcCCCc
Q 017987          181 VDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHR  260 (363)
Q Consensus       181 wEaRk~WG~lvn~sRnlar~~~~~~~~~~d~~~~~~l~r~~vAf~~aLk~hLR~~~d~~~eL~~lL~~~e~~~l~~a~n~  260 (363)
                      |||||+||+++|.+||++|++++.++++.|.++++++++.++||++|+|.|||++ +..+|+..+|+.+.++.++.+.|+
T Consensus        80 wEaRKlWG~lvn~~Rnl~R~i~t~v~e~~d~a~~~~~l~llvAFahalr~~LR~q-p~~~~l~a~l~~~~~~kv~a~~np  158 (306)
T COG3781          80 WEARKLWGQLVNAIRNLARQIWTLVPETLDSADVREFLRLLVAFAHALRLQLRKQ-PQNEDLAALLPTSDYEKVLASNNP  158 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHhCC-CchHHHHHhcCHHHHHHHHhccCC
Confidence            9999999999999999999999999877899999999999999999999999986 568999999999999999999999


Q ss_pred             HHHHHHHHHHHHHc----ccCChHHHHHHHHHHHHHHhhhhhhhhhcCCCCchhhHHHHHHHHHHHHHHhhhHhhhccCc
Q 017987          261 PRCIIEFISQSLQL----LNLEATKQNMLESKISCFHEGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLTLPIILWDDCHW  336 (363)
Q Consensus       261 P~~il~~l~~~l~~----~~l~~~~~~~l~~~l~~l~d~~G~cERI~~TPiP~~Y~~h~~~fl~lyll~LPF~Lv~~~gW  336 (363)
                      |++++.+|++++++    |.+|+.+...|++.++.+.|.+||||||.+||+|++|+.|+||.+++||++|||+||.++||
T Consensus       159 p~ei~~wmGe~l~~q~r~g~l~~~~~~sl~~~L~~~s~vlggCERI~~TPiPfAYtl~lhrtvyl~C~~LPF~lV~tlgw  238 (306)
T COG3781         159 PLEIALWMGEWLQQQRRNGQLDAIQFTSLDRRLNSISAVLGGCERIAYTPIPFAYTLHLHRTVYLFCFLLPFGLVETLGW  238 (306)
T ss_pred             HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHhHHHHhcCCccHHHHHHHHHHHHHHHHHhHHHHHHHccc
Confidence            99999999998864    79999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhcCCC
Q 017987          337 IVVPATFISAASLFCIEEFVLRGWCPY  363 (363)
Q Consensus       337 ~tip~~~lva~~llGIeeIg~eiE~PF  363 (363)
                      +|+.++++|||+|+|+|+||.||||||
T Consensus       239 ~Tp~~s~lIayTffgleaia~EiEdPF  265 (306)
T COG3781         239 ATPFFSVLIAYTFFGLEAIAEEIEDPF  265 (306)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            999999999999999999999999999

>PF01062 Bestrophin: Bestrophin, RFP-TM, chloride channel; InterPro: IPR021134 Bestrophin is a 68kDa basolateral plasma membrane protein expressed in retinal pigment epithelial cells (RPE)

Probab=100.00  E-value=3.3e-60  Score=455.99  Aligned_cols=259  Identities=29%  Similarity=0.451  Sum_probs=231.3

Q ss_pred             HHhhhccchhHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHhccccccCCCCcccccccCCchhHhHHHHHHHHHHhc
Q 017987           93 WVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFR  172 (363)
Q Consensus        93 W~~hrs~~R~~~~ll~~~~gsVl~~i~~~vl~~~~~a~~V~~l~~~~~~~~~p~~~p~l~~~~~p~sllg~aLsLLLvFR  172 (363)
                      +..||++ ++|.++++.++|+|+++++++++++++++++|++++....       ...+..+..+++++|++|||+||||
T Consensus         6 ~~~~~~~-~~~~~~l~~~~gsv~~~i~~~ll~~~~~~~~v~~~~~~~~-------~~~~~~~~~~~~l~g~~l~~lL~Fr   77 (293)
T PF01062_consen    6 NQDVRTS-RSWWRLLFRWRGSVLKRIWPPLLVFLALAAAVALLYIFEP-------ICWLSLPSSPFSLLGIALSFLLVFR   77 (293)
T ss_pred             ccccCCc-ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------cccccccccchhHHHHHHHHHHHHH
Confidence            3457777 6666888899999999999999999999999999874221       1245567788999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhhcC---CHH
Q 017987          173 TEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLL---DAD  249 (363)
Q Consensus       173 tNsAY~RwwEaRk~WG~lvn~sRnlar~~~~~~~~~~d~~~~~~l~r~~vAf~~aLk~hLR~~~d~~~eL~~lL---~~~  249 (363)
                      ||+||+|||||||+||+++|.+||++++++++++++   .++++++|+++||++++|+|||++++ ..++++++   .++
T Consensus        78 ~n~ay~Rwwe~r~~wg~l~~~~r~l~~~~~~~~~~~---~~~~~l~r~~ia~~~~~~~~lR~~~~-~~~~~~ll~~g~~~  153 (293)
T PF01062_consen   78 TNTAYDRWWEARKLWGNLVNWSRNLARQICAFVPDD---DERRRLLRRLIAFAVALKAHLRGEST-SEELEDLLEAGLTE  153 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---hhHHHHHHHHHHHHHHHHHHhcCCCh-hhhhhhhhhccchH
Confidence            999999999999999999999999999999999632   23889999999999999999998764 44577776   665


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHc----ccCChHHHHHHHHHHHHHHhhhhhhhhhcCCCCchhhHHHHHHHHHHHHHH
Q 017987          250 DLAIVLDSKHRPRCIIEFISQSLQL----LNLEATKQNMLESKISCFHEGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLT  325 (363)
Q Consensus       250 e~~~l~~a~n~P~~il~~l~~~l~~----~~l~~~~~~~l~~~l~~l~d~~G~cERI~~TPiP~~Y~~h~~~fl~lyll~  325 (363)
                      |.+.+.++.|+|+.++..+++.+++    |.+++....+|+++++++.|++|+||||++||+|++|++|+++++++|+++
T Consensus       154 ~~~~l~~~~~~p~~i~~~~~~~l~~~~~~g~~~~~~~~~l~~~l~~l~~~~g~~eri~~TPiP~~Y~~~~~~~l~~y~~~  233 (293)
T PF01062_consen  154 EERRLESADNPPNWILIQWSQRLREARREGLIDSFQLAQLDNELNALRDAQGGCERIKNTPIPFAYTQHLSRFLYIYLLL  233 (293)
T ss_pred             HHHHHHhhcCcHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHhhhheeCCCcCCHHHHHHHHHHHHHHHHH
Confidence            5567888899999999999888764    579999999999999999999999999999999999999999999999999


Q ss_pred             hhhHhhhccCcchHHHHHHHHHHHHHHHHHHHHhcCCC
Q 017987          326 LPIILWDDCHWIVVPATFISAASLFCIEEFVLRGWCPY  363 (363)
Q Consensus       326 LPF~Lv~~~gW~tip~~~lva~~llGIeeIg~eiE~PF  363 (363)
                      +||++++++||++||++++++|+|+|+|+||.||||||
T Consensus       234 lPf~l~~~~~~~~~~~~~l~~~~~~gl~~ig~~ledPF  271 (293)
T PF01062_consen  234 LPFGLVDSLGWLTPPITFLVSFFFLGLEEIGEELEDPF  271 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999

It is encoded by the VMD2 gene, which is mutated in Best macular dystrophy, a disease characterised by a depressed light peak in the electrooculogram []. VMD2 encodes a 585-amino acid protein with an approximate mass of 68 kDa which has been designated bestrophin. Bestrophin shares homology with the Caenorhabditis elegans RFP gene family, named for the presence of a conserved arginine (R), phenylalanine (F), proline (P), amino acid sequence motif. Bestrophin is a plasma membrane protein, localised to the basolateral surface of RPE cells consistent with a role for bestrophin in the generation or regulation of the EOG light peak. Bestrophin and other RFP family members represent a new class of chloride channels, indicating a direct role for bestrophin in generating the light peak []. The VMD2 gene underlying Best disease was shown to represent the first human member of the RFP-TM protein family. More than 97% of the disease-causing mutations are located in the N-terminal RFP-TM domain implying important functional properties []. This entry also includes a number of hypothetical proteins belonging to protein family UPF0187.

>KOG3547 consensus Bestrophin (Best vitelliform macular dystrophy-associated protein) [General function prediction only]

Probab=98.63  E-value=8.2e-07  Score=90.92  Aligned_cols=265  Identities=15%  Similarity=0.145  Sum_probs=163.6

Q ss_pred             CChhhHHhhhccchhHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHhcc-ccccCCCCcccccccCCchhHhHHHHHH
Q 017987           88 YSHEKWVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSA-LDSHLLPGFLPVLRASSLPYQLTAPALA  166 (363)
Q Consensus        88 y~~~~W~~hrs~~R~~~~ll~~~~gsVl~~i~~~vl~~~~~a~~V~~l~~~-~~~~~~p~~~p~l~~~~~p~sllg~aLs  166 (363)
                      |+.+  ... |...-+..+++.++|||++.|+..+++..+.=.+|.+++.+ ..... ...+..+..---.. .--+.|+
T Consensus         5 Y~~~--v~t-~~~~~f~kll~rWkGSiwKai~~el~~~l~~Y~~i~~iYR~~l~~~q-q~~Fe~~~~~~d~~-~~~iPLt   79 (450)
T KOG3547|consen    5 YNLD--VAT-SYSFTFLKLLLRWKGSIWKAIWKELLIWLILYYIISVIYRFALTESQ-QETFEKFVMYCDSR-LDFIPLT   79 (450)
T ss_pred             ehHH--hhh-hccHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHhcc-cccccch
Confidence            5555  455 55566778999999999999999877764444444444432 11000 00000000000000 0122678


Q ss_pred             HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--ChHHHHHHHHHHHH-HHH-----HHHhcccCCCCC
Q 017987          167 LLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNST--DECIKDSLLRYIMA-FPV-----ALKGHVICDSDV  238 (363)
Q Consensus       167 LLLvFRtNsAY~RwwEaRk~WG~lvn~sRnlar~~~~~~~~~~--d~~~~~~l~r~~vA-f~~-----aLk~hLR~~~d~  238 (363)
                      |+|||=.++-.+|||+-=..-|-+    +|++..+++++++.+  ....|+.++|+++. -+-     ++|-.-| -+. 
T Consensus        80 FmLGFfVt~Vv~RW~~~f~nig~i----d~~a~~vs~~i~g~d~~~r~~RRtIiRY~vLsqvLv~RdIS~~VrkR-FPt-  153 (450)
T KOG3547|consen   80 FMLGFFVTIVVDRWWKQFRNIGWI----DNLALLVSAYIPGTDERARLIRRTIIRYLVLSQVLVFRDISMKVRKR-FPT-  153 (450)
T ss_pred             HhhhhhHHHHHHHHHHHHhccCch----HHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-
Confidence            899999999999999987766655    666777778886522  23456677776532 111     1222222 222 


Q ss_pred             cchh--hhcCCHHHHHHHhc---CCC-c---H-HHHHHHHHHHHHcccCCh-HHHHHHHHHHHHHHhhhhhhhhhcCCCC
Q 017987          239 SGDL--QDLLDADDLAIVLD---SKH-R---P-RCIIEFISQSLQLLNLEA-TKQNMLESKISCFHEGIGVCEQLMGIPI  307 (363)
Q Consensus       239 ~~eL--~~lL~~~e~~~l~~---a~n-~---P-~~il~~l~~~l~~~~l~~-~~~~~l~~~l~~l~d~~G~cERI~~TPi  307 (363)
                      .+.+  .++++++|++.+..   +.| +   | +.+.+.+.+.-++|.+.+ .....+.+.+.++-..++..=.-=-.||
T Consensus       154 ~d~lv~AG~mt~~E~~~~~~~~~~~~~kyw~Pi~Wa~sl~~~a~~~g~i~~d~~~~~~~~ei~~fR~~l~~L~~yDwVpI  233 (450)
T KOG3547|consen  154 LDHLVEAGLMTEEELDILENIVDSKYMKYWVPINWAFSLLRKARKEGRIESDYLYNSLLGEIKKFRTGLSLLCNYDWVPI  233 (450)
T ss_pred             hHHHHHhcCCcHHHHHHHHhcccccccceeecHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhccccCCCceec
Confidence            2233  68999999988843   233 2   3 577788888888898843 3555666666666655554444445899


Q ss_pred             chhhHHHHHHHHHHHHHHhhhH----h-----hhccCcchHHHHHHHHHHHHHHHHHHHHhcCCC
Q 017987          308 PLSYTRLTSRFLVLWHLTLPII----L-----WDDCHWIVVPATFISAASLFCIEEFVLRGWCPY  363 (363)
Q Consensus       308 P~~Y~~h~~~fl~lyll~LPF~----L-----v~~~gW~tip~~~lva~~llGIeeIg~eiE~PF  363 (363)
                      |+.|.+-....+.+|.++-=|+    .     .++..+..|..|.+=-.++.|--.+|+.+-|||
T Consensus       234 PL~YpQvV~lAVr~YF~~cL~~RQ~l~~~~~~~~~id~~fPi~T~lQFiF~vGWmKVaE~LlNP~  298 (450)
T KOG3547|consen  234 PLVYPQVVFLAVRSYFFICLFGRQYLDRDDSKKTEIDLYFPIMTILQFIFYVGWLKVAEVLLNPL  298 (450)
T ss_pred             cccccceeeeehHHhHHHHhhccccCCcccccccccceeehhHHHHHHHHHhhHHHHHHHHhCCC
Confidence            9999987766555554433222    1     123467788888888888899999999999997

>PF14023 DUF4239: Protein of unknown function (DUF4239)

Probab=97.31  E-value=0.08  Score=48.79  Aligned_cols=68  Identities=19%  Similarity=0.315  Sum_probs=53.9

Q ss_pred             hHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHH
Q 017987          158 YQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALK  229 (363)
Q Consensus       158 ~sllg~aLsLLLvFRtNsAY~RwwEaRk~WG~lvn~sRnlar~~~~~~~~~~d~~~~~~l~r~~vAf~~aLk  229 (363)
                      ++++|+..|++|+|=.+.+|+|+.++++.--.=.+..+++.+.+..+.+.+    .++++...+..|..++-
T Consensus         2 ~~~vg~l~al~laf~~~~~~~~~~~a~~~v~~EA~al~~l~~~~~~lp~~~----~~~~~r~~l~~Y~~~vv   69 (209)
T PF14023_consen    2 FGVVGVLFALLLAFTISSAWSRYDNARQAVNQEANALGTLYRLLASLPEPP----DRDEIRALLRAYTRAVV   69 (209)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc----hhHHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999988764112    24455566666666553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	363
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 52/278 (18%), Positives = 90/278 (32%), Gaps = 99/278 (35%)

Query: 10  ILPPSHFIPKTLLKL----QPSITTLTFPSKSPNPLTFKTLSCLESQSQSETKTLTLISV 65
           + PPS  IP  LL L          +   +K          S +E Q +  T +      
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNK------LHKYSLVEKQPKESTIS------ 427

Query: 66  LRAIPDWADRVKERGVKQKRTLYSHEKWVEHRSSLR------------------HV-RHL 106
              IP     +K + ++ +  L  H   V+H +  +                  H+  HL
Sbjct: 428 ---IPSIYLELKVK-LENEYAL--HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481

Query: 107 LS-SLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPV-LRASSLPYQLTAPA 164
            +     R+ L        F MV      +   LD      FL   +R  S  +  +   
Sbjct: 482 KNIEHPERMTL--------FRMV------F---LDFR----FLEQKIRHDSTAWNASGSI 520

Query: 165 LALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAF 224
           L  L   +    Y  ++                        DN       + L+  I+ F
Sbjct: 521 LNTLQQLKF---YKPYI-----------------------CDNDPK---YERLVNAILDF 551

Query: 225 PVALKGHVICD--SDVSGDLQDLLDADDLAIVLDSKHR 260
              ++ ++IC   +D+   L+  L A+D AI  ++ H+
Sbjct: 552 LPKIEENLICSKYTDL---LRIALMAEDEAIFEEA-HK 585

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00