Citrus Sinensis ID: 018026

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360--
Protein Sequence
MFNRFFLAAIAIAALVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGSSTAPSASPPSPTATPPSTTTNPPPQSPGGGTAPPPPNSSAKSLGAASLFTSFLVIVAGLLY
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHccEEEEEEccccccccccccccccccccccccEEcccEEEEEEccccccEEEEcHHHccccccccccccccccccEEEccccccEEEEcccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccEEcccEEEEEccccccEEEEEcHHHHcccccccccccccccccEEEEcccccEEEEcccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHccEEEEEccccccEEccccccHHHHHHHcccEEcccEEEEcccccccccEEEcHHHHHHcccccccccEEcccEEEEEcccEEEEEEcccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccEEEEccccccEEcccccccHHHHHccccEEEccEEEEEEccccccEEEEcHHHHHHcccccccHEccccccEEEEcccEEEEEEcccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MFNRFFLAAIAIAALVQSSTAQTRHVVgdalgwivppngpatysnwaanqtftvgDTLVFNfaagnhdvtrvtqssfnacnttsplsrttnspasvtltasgphyficsfpghclggqklainvsargsspapqpsspapqpsgstpspvpapartptpapapapepattptpapasaptptprsaptpaptrqpathvvggalgwtvppnasvgyqnwarnnnfsvgdilvfdyparvhDVVEVTKAAydscnssstiskstnpptritlgtagehyffctfpghcsagqklavnvtggsstapsasppsptatppstttnpppqspgggtappppnssakslgaaSLFTSFLVIVAGLLY
Flexible Loop (DISEMBL)
MFNRFFLAAIAIAALVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNttsplsrttnsPASVTLTASGPHYFICSFPGHCLGGQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAydscnssstiskstnppTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGSSTAPSASPPSPTATPPSTTTNPPPQSPGGGTAPPPPNSSAKSLGAASLFTSFLVIVAGLLY
Low Complexity Region (SEG)
MFNRfflaaiaiaalVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVsargsspapqpsspapqpsgstpspvpapartptpapapapepattptpapasaptptprsaptpaptrqpatHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDscnssstiskstnpptRITLGTAGEHYFFCTFPGHCSAGQKLAVNVtggsstapsasppsptatppstttnpppqspgggtAPPPPNSSAKSLGAASLFTSFLVIVAGLLY
Disordered region (IsUnstruct)
**NRFFLAAIAIAALVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNAC***************VTLTASGPHYFICSFPGHCLGGQKLAINV*************************************************************************HVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSC**************RITLGTAGEHYFFCTFPGHCSAGQKLAVNV************************************************AASLFTSFLVIVAGLL*
Disordered Region (DISOPRED)
**NRFFLAAIAIAALVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAI***********************************************TPTPAPASAPTPTPRSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVN*************************************************AASLFTSFLVIVAGLLY
Disordered Region (DISEMBL)
MFNRFFLAAIAIAALVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNAC************PASVTLTASGPHYFICSFPGHCLGGQKLAINVS**********************************************************************ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYD************NPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNV**********************************************LGAASLFTSFLVIVAGLLY
Disordered Region (DISPRO)
MFNRFFLAAIAIAALVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSAR***********************************************PASAPTPTPRSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGG******************************************SLGAASLFTSFLVIVAGLLY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
ooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFNRFFLAAIAIAALVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGSSTAPSASPPSPTATPPSTTTNPPPQSPGGGTAPPPPNSSAKSLGAASLFTSFLVIVAGLLY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	362	2.2.26 [Sep-21-2011]
Q07488	196	Blue copper protein OS=Ar	no	no	0.334	0.617	0.442	1e-22
Q9SK27	182	Early nodulin-like protei	no	no	0.397	0.791	0.371	2e-20
Q41001	189	Blue copper protein OS=Pi	N/A	no	0.309	0.592	0.420	6e-20
P00302	107	Stellacyanin OS=Toxicoden	N/A	no	0.279	0.943	0.431	2e-19
P29602	137	Cucumber peeling cupredox	N/A	no	0.279	0.737	0.490	6e-19
P42849	115	Umecyanin OS=Armoracia ru	N/A	no	0.267	0.843	0.459	1e-18
P80728	108	Mavicyanin OS=Cucurbita p	N/A	no	0.279	0.935	0.417	1e-17
Q9T076	349	Early nodulin-like protei	no	no	0.367	0.381	0.343	8e-17
O80517	202	Uclacyanin-2 OS=Arabidops	no	no	0.273	0.490	0.441	1e-16
P00303	96	Basic blue protein OS=Cuc	N/A	no	0.259	0.979	0.386	7e-14

>sp|Q07488|BCB1_ARATH Blue copper protein OS=Arabidopsis thaliana GN=BCB PE=1 SV=2

 Score =  107 bits (268), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/122 (44%), Positives = 70/122 (57%), Gaps = 1/122 (0%)

Query: 27  VGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPL 86
           VGD   W  P + P  Y+ WA  +TF VGD L F+FAAG HDV  V++++F  C    P+
Sbjct: 27  VGDDTEWTRPMD-PEFYTTWATGKTFRVGDELEFDFAAGRHDVAVVSEAAFENCEKEKPI 85

Query: 87  SRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSARGSSPAPQPSSPAPQPSGST 146
           S  T  P  + L  +GP YFIC+   HC  GQKL+I V A G++    P + A    GST
Sbjct: 86  SHMTVPPVKIMLNTTGPQYFICTVGDHCRFGQKLSITVVAAGATGGATPGAGATPAPGST 145

Query: 147 PS 148
           PS
Sbjct: 146 PS 147

Probably acts as an electron carrier.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK27|ENL1_ARATH Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2

 Score =  100 bits (248), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 77/148 (52%), Gaps = 4/148 (2%)

Query: 7   LAAIAIAALVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGN 66
           +A  ++  L   + A    V G +  W +PP+   +++ WA    F VGD +VF + +G 
Sbjct: 14  VAIFSLIFLFSLAAANEVTVGGKSGDWKIPPSSSYSFTEWAQKARFKVGDFIVFRYESGK 73

Query: 67  HDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSA 126
             V  VT+ ++N+CNTT+PL+  T+    V L  SGP YFI    GHC  GQKL++ V  
Sbjct: 74  DSVLEVTKEAYNSCNTTNPLANYTDGETKVKLDRSGPFYFISGANGHCEKGQKLSLVV-- 131

Query: 127 RGSSPAPQPSSPAPQPSGSTPSPVPAPA 154
              SP     SPAP P      P  APA
Sbjct: 132 --ISPRHSVISPAPSPVEFEDGPALAPA 157

Arabidopsis thaliana (taxid: 3702)

>sp|Q41001|BCP_PEA Blue copper protein OS=Pisum sativum PE=2 SV=1

 Score = 98.6 bits (244), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 70/119 (58%), Gaps = 7/119 (5%)

Query: 6   FLAAIAIAALVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAG 65
           FL AI   AL   +T  T   VGD  GW++  +    YS WA+++TF VGD+LVFN+ AG
Sbjct: 11  FLLAIINMALPSLATVYT---VGDTSGWVIGGD----YSTWASDKTFAVGDSLVFNYGAG 63

Query: 66  NHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
            H V  V +S + +C + + +S  +    ++ L  +G HYFIC  PGH  GG KL+I V
Sbjct: 64  AHTVDEVKESDYKSCTSGNSISTDSTGATTIPLKKAGKHYFICGVPGHSTGGMKLSIKV 122

Pisum sativum (taxid: 3888)

>sp|P00302|STEL_TOXVR Stellacyanin OS=Toxicodendron vernicifluum PE=1 SV=1

 Score = 97.1 bits (240), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 58/102 (56%), Gaps = 1/102 (0%)

Query: 198 HVVGGALGWTVPPNASVGYQ-NWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSS 256
           + VG + GW VP    V Y   WA N  F +GD+LVF Y  R H+V +VT+  Y SCN +
Sbjct: 3   YTVGDSAGWKVPFFGDVDYDWKWASNKTFHIGDVLVFKYDRRFHNVDKVTQKNYQSCNDT 62

Query: 257 STISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVT 298
           + I+       RI L T G+ Y+ C  P HC  GQK+ +NVT
Sbjct: 63  TPIASYNTGBBRINLKTVGQKYYICGVPKHCDLGQKVHINVT 104

Toxicodendron vernicifluum (taxid: 4013)

>sp|P29602|CPC_CUCSA Cucumber peeling cupredoxin OS=Cucumis sativus PE=1 SV=3

 Score = 95.1 bits (235), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 53/108 (49%), Positives = 66/108 (61%), Gaps = 7/108 (6%)

Query: 23  TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRV-TQSSFNACN 81
           T H+VGD  GW VP   P  YS WAA +TF VGD+L FNF A  H+V  + T+ SF+ACN
Sbjct: 3   TVHIVGDNTGWSVPS-SPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACN 61

Query: 82  ---TTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSA 126
              + + + RT  SP    L   G HYF+C+   HC  GQKL+INV A
Sbjct: 62  FVNSDNDVERT--SPVIERLDELGMHYFVCTVGTHCSNGQKLSINVVA 107

Cucumis sativus (taxid: 3659)

>sp|P42849|UMEC_ARMRU Umecyanin OS=Armoracia rusticana PE=1 SV=1

 Score = 94.4 bits (233), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/98 (45%), Positives = 59/98 (60%), Gaps = 1/98 (1%)

Query: 27  VGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPL 86
           VG  + W  P + P  Y  WA  +TF VGD L F+FAAG HDV  VT+ +F+ C   +P+
Sbjct: 5   VGGDMEWKRPSD-PKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPI 63

Query: 87  SRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
           S  T  P  + L  +GP Y+IC+   HC  GQKL+INV
Sbjct: 64  SHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINV 101

Not yet known.

Armoracia rusticana (taxid: 3704)

>sp|P80728|MAVI_CUCPE Mavicyanin OS=Cucurbita pepo PE=1 SV=1

 Score = 90.9 bits (224), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 60/103 (58%), Gaps = 2/103 (1%)

Query: 23  TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNT 82
           T H VGD+ GW      P  Y+ WA++  F VGD+L+FN+    H+V +V Q  F +CN+
Sbjct: 2   TVHKVGDSTGWTTLV--PYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNS 59

Query: 83  TSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVS 125
           +SP +  T+   S+ L   G  YF+C  PGHC  GQK+ I V 
Sbjct: 60  SSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKVD 102

Cucurbita pepo (taxid: 3663)

>sp|Q9T076|ENL2_ARATH Early nodulin-like protein 2 OS=Arabidopsis thaliana GN=At4g27520 PE=1 SV=1

 Score = 88.2 bits (217), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 4/137 (2%)

Query: 5   FFLAAIAIAALVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAA 64
           FF   ++++ L   S A+ +  VG +  W+  P  P  Y +W+    F V DTL F++A 
Sbjct: 12  FFTILLSLSTLFTISNAR-KFNVGGSGAWVTNP--PENYESWSGKNRFLVHDTLYFSYAK 68

Query: 65  GNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKL-AIN 123
           G   V  V ++ ++ACNT +P+ R  +  + ++L   GP YFI     +C  GQKL  + 
Sbjct: 69  GADSVLEVNKADYDACNTKNPIKRVDDGDSEISLDRYGPFYFISGNEDNCKKGQKLNVVV 128

Query: 124 VSARGSSPAPQPSSPAP 140
           +SAR  S A  P + AP
Sbjct: 129 ISARIPSTAQSPHAAAP 145

Arabidopsis thaliana (taxid: 3702)

>sp|O80517|BCB2_ARATH Uclacyanin-2 OS=Arabidopsis thaliana GN=At2g44790 PE=1 SV=1

 Score = 87.8 bits (216), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 59/102 (57%), Gaps = 3/102 (2%)

Query: 203 ALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKS 262
           A+ +T+     V Y  WA    F VGDIL F Y +  H V  V KA YD C++SS+    
Sbjct: 29  AVTYTIEWTTGVDYSGWATGKTFRVGDILEFKYGSS-HTVDVVDKAGYDGCDASSSTENH 87

Query: 263 TNPPTRITLGTAGEHYFFCTFPGHC--SAGQKLAVNVTGGSS 302
           ++  T+I L T G +YF C+ PGHC  + G KLAVNV  GS+
Sbjct: 88  SDGDTKIDLKTVGINYFICSTPGHCRTNGGMKLAVNVVAGSA 129

Probably acts as an electron carrier involved in oxygen activation and/or lignin formation.

Arabidopsis thaliana (taxid: 3702)

>sp|P00303|BABL_CUCSA Basic blue protein OS=Cucumis sativus PE=1 SV=1

 Score = 78.6 bits (192), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 58/101 (57%), Gaps = 7/101 (6%)

Query: 196 ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNS 255
           A +VVGG+ GWT         ++W +   F  GDIL+F+Y   +H+VV V +  + +CN+
Sbjct: 1   AVYVVGGSGGWTFNT------ESWPKGKRFRAGDILLFNYNPXMHNVVVVNQGGFSTCNT 54

Query: 256 SSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVN 296
            +     T+   +I L   G+ YF C FPGHC +G K+AVN
Sbjct: 55  PAGAKVYTSGRDQIKL-PKGQSYFICNFPGHCQSGMKIAVN 94

Cucumis sativus (taxid: 3659)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	362
356548479	336	PREDICTED: uncharacterized protein LOC10	0.928	1.0	0.458	4e-76
357478161	370	Blue copper protein [Medicago truncatula	0.955	0.935	0.471	2e-74
350535054	332	dicyanin precursor [Solanum lycopersicum	0.798	0.870	0.459	7e-69
255572517	312	Early nodulin 16 precursor, putative [Ri	0.839	0.974	0.380	3e-59
297743460	624	unnamed protein product [Vitis vinifera]	0.751	0.435	0.419	3e-55
449436136	437	PREDICTED: uncharacterized protein LOC10	0.696	0.576	0.392	7e-49
449509319	269	PREDICTED: uncharacterized LOC101207314	0.657	0.884	0.364	2e-40
388504792	229	unknown [Medicago truncatula]	0.483	0.764	0.525	3e-40
449493699	499	PREDICTED: uncharacterized protein LOC10	0.676	0.490	0.379	1e-37
255572515	242	Cucumber peeling cupredoxin, putative [R	0.441	0.661	0.540	1e-37

>gi|356548479|ref|XP_003542629.1| PREDICTED: uncharacterized protein LOC100805802 [Glycine max]

 Score =  291 bits (745), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 166/362 (45%), Positives = 214/362 (59%), Gaps = 26/362 (7%)

Query: 1   MFNRFFLAAIAIAALVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVF 60
           M     L   A+A L+  S AQTRH+VGDA GWI+P  G ATY+ WA+N+TFTV DTLVF
Sbjct: 1   MARNLLLVLFAVATLLHGSAAQTRHMVGDATGWIIPAGGAATYTAWASNKTFTVNDTLVF 60

Query: 61  NFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKL 120
           NFA G H+V +VT+S+F+ACN  S +   T+ PA+VTL  +G  Y+ICS   HC  GQKL
Sbjct: 61  NFATGQHNVAKVTKSAFDACNGGSAVFTLTSGPATVTLNETGEQYYICSVGSHCSAGQKL 120

Query: 121 AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPT 180
           AINV+ R SS  P   SPAPQP GS   P        +P P  AP+ ++   P  ++   
Sbjct: 121 AINVN-RASSTGP---SPAPQPRGSGSPP------RASPVPTQAPQASSPTPPPRSAPAP 170

Query: 181 PTPRSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVH 240
                     P+ +PAT +VG   GW VP NAS  Y  WA   NF VGD+LVF+Y +  H
Sbjct: 171 AF-------GPSSEPATFIVGETAGWIVPGNASF-YTAWASGKNFRVGDVLVFNYASNTH 222

Query: 241 DVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGG 300
           +V EVTKA +D+C+S+S I+  T PP R+TL  +G+H+F C  PGHC  GQKLA+NVTG 
Sbjct: 223 NVEEVTKANFDACSSASPIATFTTPPARVTLNKSGQHFFICGIPGHCLGGQKLAINVTGS 282

Query: 301 SSTAPSASPPSPTATPPSTTTNPPPQSPGGGTAPPPPNSSAKSLGAASLFTSFLVIVAGL 360
           S+  P ++   PT     +          G   PPP NS A SLG   +F + L + A  
Sbjct: 283 STATPPSAAAPPTTPSSPSPA--------GAVTPPPQNSGAASLGVVGVFATLLSVAATF 334

Query: 361 LY 362
            Y
Sbjct: 335 FY 336

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478161|ref|XP_003609366.1| Blue copper protein [Medicago truncatula] gi|355510421|gb|AES91563.1| Blue copper protein [Medicago truncatula]

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 176/373 (47%), Positives = 221/373 (59%), Gaps = 27/373 (7%)

Query: 2   FNRFFLAAIAIAA-LVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVF 60
           FN      +A+AA L   S AQTRHVVGD  GW +P NG + Y+NWA+N+TFTVGDTLVF
Sbjct: 5   FNVLVFVLLAVAANLFHGSFAQTRHVVGDTTGWTIPTNGASFYTNWASNKTFTVGDTLVF 64

Query: 61  NFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKL 120
           N+A+G HDV +VT++++++CN  + L   TNSPA+VTL  +G   FIC+ PGHC  GQKL
Sbjct: 65  NYASGQHDVAKVTKTAYDSCNGANTLFTLTNSPATVTLNETGQQNFICAVPGHCSAGQKL 124

Query: 121 AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPT 180
           +INV    +SP       AP PS S       P  TP P P PA  PA T    PA AP+
Sbjct: 125 SINVVKASASPVS-----APTPSAS------PPKATPAPTPVPAKSPAPTKAATPAPAPS 173

Query: 181 PTPRSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVH 240
            T    P PAP     T+ VG  +GW +P N +  Y  WA   +F VGDILVF++    H
Sbjct: 174 TTASPTPAPAPATGRVTYTVGDTIGWIIPSNGTAAYTTWASGKSFKVGDILVFNFQLNAH 233

Query: 241 DVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGG 300
           +V EVTK  YDSCNS+S I+  +NPP R+TL   G HY+ C  PGHCSAGQKL++NV  G
Sbjct: 234 NVEEVTKEKYDSCNSTSPIATFSNPPVRVTLNKTGTHYYICGVPGHCSAGQKLSINVGSG 293

Query: 301 SSTAP---------------SASPPSPTATPPSTTTNPPPQSPGGGTAPPPPNSSAKSLG 345
           SS+                 +  P +  +  P +   P  QSPGG  +PPP NS A SLG
Sbjct: 294 SSSPATSPSPSASSPSPSTGATPPSASGSPSPGSPVTPSSQSPGGSVSPPPENSGAASLG 353

Query: 346 AASLFTSFLVIVA 358
            A LF + L I A
Sbjct: 354 VAGLFVTVLSIAA 366

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350535054|ref|NP_001234429.1| dicyanin precursor [Solanum lycopersicum] gi|7670832|gb|AAF66242.1|AF243180_1 dicyanin [Solanum lycopersicum]

 Score =  267 bits (682), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 148/322 (45%), Positives = 194/322 (60%), Gaps = 33/322 (10%)

Query: 7   LAAIAIAALVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGN 66
             +I  A L   + AQ  HVVGD LGW VP  G A+YS WAA ++F VGD LVFNF +G+
Sbjct: 11  FGSILFALLQHVAMAQQTHVVGDTLGWTVPNGGAASYSTWAAGKSFVVGDILVFNFRSGS 70

Query: 67  HDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSA 126
           H V  V++ +F++CNT+SP+S +TN P ++TL+++G HY++C+FP HC  GQKLAINVS 
Sbjct: 71  HSVAEVSKGAFDSCNTSSPISISTNGPTNITLSSAGSHYYLCTFPSHCTLGQKLAINVSG 130

Query: 127 RGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSA 186
             S       +        T +PV APA + + APA AP PA+                 
Sbjct: 131 SASPAPQPAPATP-----PTATPVMAPAPSVSVAPATAPSPASVA--------------- 170

Query: 187 PTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVT 246
                     T++VG  LGW+VP +    YQ WA N +F VGD LVF++    H+V  V+
Sbjct: 171 ---------QTYIVGDNLGWSVPTSGPNSYQRWANNKSFKVGDTLVFNFVNGTHNVAMVS 221

Query: 247 KAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGSSTAPS 306
           KA+YDSCN++S I+  +N P RI L  +GEHY+ CTFP HCS GQKLA+NVTG   TAP+
Sbjct: 222 KASYDSCNTTSPINTISNGPARIRLTNSGEHYYMCTFPRHCSLGQKLAINVTGSDVTAPT 281

Query: 307 ASPPSPTATPPSTTTNPPPQSP 328
              PS  ATP S T  P   SP
Sbjct: 282 ---PSTAATPSSPTV-PSSDSP 299

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572517|ref|XP_002527193.1| Early nodulin 16 precursor, putative [Ricinus communis] gi|223533458|gb|EEF35206.1| Early nodulin 16 precursor, putative [Ricinus communis]

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 135/355 (38%), Positives = 187/355 (52%), Gaps = 51/355 (14%)

Query: 7   LAAIAIAALVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGN 66
           + AIA A+L+ ++TA+T  VVGD LGW+VPP G   Y+ WAA  TFTVGD LVFNF  G 
Sbjct: 9   ILAIAFASLLNTTTAKTL-VVGDGLGWLVPPGGDLAYATWAAINTFTVGDVLVFNFTTGQ 67

Query: 67  HDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSA 126
            DV RVT+ ++  CN+T+P++  T  PA+ TL  +G ++FI +   HC  GQ+LAI V+A
Sbjct: 68  QDVARVTKEAYLFCNSTNPIALKTTGPANFTLDTTGAYFFISTMDKHCPLGQRLAIYVTA 127

Query: 127 RGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSA 186
                      P P PS                                     P P +A
Sbjct: 128 -----------PGPYPS-------------------------------------PGPHTA 139

Query: 187 PTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVT 246
           P+P P R P T+ VG  +GW VPP  ++ Y  WA N  F VGD+LVF++   + DV  VT
Sbjct: 140 PSPVPNRAPVTYTVGDGMGWIVPPGGALAYMTWAYNKTFIVGDVLVFNFVDGLQDVALVT 199

Query: 247 KAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGSSTAPS 306
           K AY++CN++STI   +  P  I L   G+++F  T+P  C  GQ+LA+ V   + T   
Sbjct: 200 KEAYETCNTNSTIQVWSTSPANILLNATGDYFFTSTYPNRCILGQQLAIRVVASTGTGGV 259

Query: 307 ASPPSPTATPPSTTTNPPPQSPGGGTAPPPPNSSAKSLGAASLFTSFLVIVAGLL 361
            +PPS    PP+++++       G  APP   SSA S   A  F + + I   L 
Sbjct: 260 LAPPSGIVNPPTSSSSISSLVTEGPAAPPV--SSAPSPAVAGFFITLVSISMALF 312

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743460|emb|CBI36327.3| unnamed protein product [Vitis vinifera]

 Score =  221 bits (564), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 127/303 (41%), Positives = 170/303 (56%), Gaps = 31/303 (10%)

Query: 1   MFNRFFLAAIA--IAALVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTL 58
           M     +A I   +AA++  S AQT HVVGD  GW VP  G ATY++WA+ + F VGDTL
Sbjct: 1   MARLISMAVIVAVLAAMLHYSAAQTVHVVGDNTGWTVPQGGAATYTSWASGKQFVVGDTL 60

Query: 59  VFNFAAGNHDVTRVTQSSFNACNTTSPL-SRTTNSPASVTLTASGPHYFICSFPGHCLGG 117
           VFNFA   HDV  +++ SF+AC+ +S + S  T  PA++TL  +G HY++C+   HC  G
Sbjct: 61  VFNFATNVHDVAELSKESFDACDFSSTIGSIITTGPANITLATAGNHYYVCTIGSHCTSG 120

Query: 118 QKLAINVSAR-GSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPA 176
           QKLAI+VSA  G+SP          PS ST +P                 P T    + +
Sbjct: 121 QKLAISVSATPGASP----------PSSSTATP----------------PPTTQGGDSSS 154

Query: 177 SAPTPTPRSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYP 236
           S        A     +     HVVG   GWTVP   +  Y +WA    F VGD LVF++ 
Sbjct: 155 STVFAIVVLAAMLHYSAAQTVHVVGDNTGWTVPQGGAATYTSWASGRQFVVGDTLVFNFA 214

Query: 237 ARVHDVVEVTKAAYDSCNSSSTISK-STNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAV 295
             VHDV E++K ++D+C+ SSTI    T  P  ITL TAG HY+ CT   HC++GQKLA+
Sbjct: 215 TNVHDVAELSKESFDACDFSSTIGNIITTGPANITLATAGNHYYVCTIGSHCTSGQKLAI 274

Query: 296 NVT 298
           +V+
Sbjct: 275 SVS 277

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436136|ref|XP_004135850.1| PREDICTED: uncharacterized protein LOC101207314 [Cucumis sativus]

 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 118/301 (39%), Positives = 155/301 (51%), Gaps = 49/301 (16%)

Query: 1   MFNRF-FLAAIAIAALVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLV 59
           M  RF F+   A+   +Q S AQT + VGD++GW VP NG   Y  WAA++ F VGD+LV
Sbjct: 1   MAARFAFVLPFALFLFLQYSAAQTVYTVGDSVGWTVPANGEVFYKTWAADKIFYVGDSLV 60

Query: 60  FNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNS-PASVTLTASGPHYFICSFPGHCLGGQ 118
           FNF     +V RVT+  F+ C+  + +  +  + PA+++L   G ++FI S   HC  GQ
Sbjct: 61  FNFTTDKDEVARVTKMGFDMCSDDNEIGDSIETGPATISLLTPGEYFFISSEDRHCQQGQ 120

Query: 119 KLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASA 178
           KLAINV+A     AP P SP   PS + P                 P+            
Sbjct: 121 KLAINVTA-----APGPRSP---PSSNVP-----------------PQ------------ 143

Query: 179 PTPTPRSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPAR 238
                    TPAP R P THVVG   GW +P   +V Y NWA   +F  GD LVF++   
Sbjct: 144 ---------TPAPKRAPVTHVVGDTAGWGIPKGGAVFYSNWAAGKSFLAGDSLVFNFATP 194

Query: 239 VHDVVEVTKAAYDSCNSSSTISKSTNP-PTRITLGTAGEHYFFCTFPGHCSAGQKLAVNV 297
             DVV V+K ++D CN    I +  +  P  I L T GE+YF     GHC  GQKLA+NV
Sbjct: 195 DDDVVRVSKQSFDLCNDDGEIGEDIDHGPATIPLLTPGEYYFISNEDGHCQQGQKLAINV 254

Query: 298 T 298
           T
Sbjct: 255 T 255

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449509319|ref|XP_004163553.1| PREDICTED: uncharacterized LOC101207314 [Cucumis sativus]

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 105/288 (36%), Positives = 142/288 (49%), Gaps = 50/288 (17%)

Query: 4   RF-FLAAIAIAALVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNF 62
           RF F+   A+   +Q S AQT + VGD++GW VP NG   Y  WAA++ F VGD+LVFNF
Sbjct: 4   RFAFVLPFALFLFLQYSAAQTVYTVGDSVGWTVPANGEVFYKTWAADKIFYVGDSLVFNF 63

Query: 63  AAGNHDVTRVTQSSFNACNTTSPLSRTTNS-PASVTLTASGPHYFICSFPGHCLGGQKLA 121
                +V RVT+  F+ C+  + +  +  + PA+++L   G ++FI S   HC  GQKLA
Sbjct: 64  TTDKDEVARVTKMGFDMCSDDNEIGDSIETGPATISLLTPGEYFFISSEDRHCQQGQKLA 123

Query: 122 INVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTP 181
           INV+A     AP P SP   PS + P   PAP R P                        
Sbjct: 124 INVTA-----APGPRSP---PSSNVPPQTPAPKRAPV----------------------- 152

Query: 182 TPRSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHD 241
                          THVVG   GW +P   +V Y NWA   +F  GD LVF++     D
Sbjct: 153 ---------------THVVGDTAGWGIPKGGAVFYSNWAAGKSFLAGDSLVFNFATPDDD 197

Query: 242 VVEVTKAAYDSCNSSSTISKSTNP-PTRITLGTAGEH-YFFCTFPGHC 287
           VV V+K ++D CN    I +  +  P  I L T G+  ++ C F  HC
Sbjct: 198 VVRVSKQSFDLCNDDGEIGEDIDHGPATIPLLTPGDDGHYLCHFVRHC 245

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504792|gb|AFK40462.1| unknown [Medicago truncatula]

 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 94/179 (52%), Positives = 123/179 (68%), Gaps = 4/179 (2%)

Query: 2   FNRFFLAAIAIAA-LVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVF 60
           FN      +A+AA L   S AQTRHVVGD  GW +P NG + Y+NWA+N+TFTVGDTLVF
Sbjct: 5   FNVLVFVLLAVAANLFHGSFAQTRHVVGDTTGWTIPTNGASFYTNWASNKTFTVGDTLVF 64

Query: 61  NFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKL 120
           N+A+G HDV +VT++++++CN  + L   TNSPA+VTL  +G   F+C+ PGHC  GQKL
Sbjct: 65  NYASGQHDVAKVTKTAYDSCNGANTLFTLTNSPATVTLNETGQQNFLCAVPGHCSAGQKL 124

Query: 121 AINVSARGSSPAPQPS-SPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATT--PTPAPA 176
           +INV    +SP   P+ S +P  +   P+PVPA +  PT A  PAP P+TT  PTPAPA
Sbjct: 125 SINVVKASASPVSAPTPSASPPKATPAPTPVPAKSPAPTKAATPAPAPSTTASPTPAPA 183

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449493699|ref|XP_004159418.1| PREDICTED: uncharacterized protein LOC101231160 [Cucumis sativus]

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 107/282 (37%), Positives = 146/282 (51%), Gaps = 37/282 (13%)

Query: 25  HVVGDALGWIVPPNGPA--TYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNT 82
           + VGD LGW++PP  P    Y++WA N+TF VGDTL+FNF  G+ DV  VT+  F++CN 
Sbjct: 151 YTVGDKLGWLIPPPDPLGLFYASWAYNKTFLVGDTLIFNFYNGSDDVAVVTKEVFDSCNI 210

Query: 83  TSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSARGSSPAPQPSSPA--P 140
           TS L    ++PA++ L ++G HY+  ++  HC+ GQKLAINV+   +       SP+   
Sbjct: 211 TSTLEVFNSTPANIALNSTGEHYYTSTYEKHCMLGQKLAINVTEHTTPSPGSAPSPSTTA 270

Query: 141 QPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAP-----TPTPRSAPTPAPTRQP 195
            P   T SP PA    P+   +P   PATT  P+ A +      TPT  S  +  P R  
Sbjct: 271 HPPSHTVSPSPATTHPPSHTVSP---PATTHPPSHAVSSFSGHCTPTLHSGLSFIPGR-- 325

Query: 196 ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNS 255
                                  W+  ++       VF++    HDV EVTKA  DSC+ 
Sbjct: 326 -----------------------WSCGSSTEKLRSTVFNFTTGQHDVTEVTKAGLDSCSG 362

Query: 256 SSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNV 297
           ++ IS   N P  I L TAG  +F C+ P HCS GQKL V V
Sbjct: 363 TNPISVMRNGPASIPLSTAGTRHFICSIPTHCSFGQKLTVTV 404

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572515|ref|XP_002527192.1| Cucumber peeling cupredoxin, putative [Ricinus communis] gi|223533457|gb|EEF35205.1| Cucumber peeling cupredoxin, putative [Ricinus communis]

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 87/161 (54%), Positives = 106/161 (65%), Gaps = 1/161 (0%)

Query: 6   FLAAIAIAALVQSSTAQTR-HVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAA 64
           FLAAI +A  VQSS AQT  HVVG A+GW +PP G   YS WAANQTF  GD LVFNFA 
Sbjct: 9   FLAAIIVAGFVQSSIAQTTTHVVGGAVGWTIPPGGATVYSTWAANQTFAAGDVLVFNFAN 68

Query: 65  GNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
             HDV +V+++ ++AC + +P+S    SPA +T+ ASG HYFIC+F GHC  GQKL INV
Sbjct: 69  NIHDVAKVSKADYDACASANPISLAITSPARITINASGEHYFICNFTGHCSAGQKLMINV 128

Query: 125 SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAP 165
           SA  +       S    P  ST +PVPAP+ TP  AP+  P
Sbjct: 129 SAATTPAPAPQPSSPSPPPQSTTTPVPAPSPTPVSAPSSTP 169

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	362
TAIR|locus:2062525	261	UCC1 "uclacyanin 1" [Arabidops	0.279	0.386	0.466	1e-20
TAIR|locus:2151069	187	AT5G26330 [Arabidopsis thalian	0.265	0.513	0.448	2.1e-20
TAIR|locus:2149249	196	BCB "blue-copper-binding prote	0.267	0.494	0.459	7.2e-20
TAIR|locus:2052866	200	AT2G31050 [Arabidopsis thalian	0.284	0.515	0.443	6.5e-19
TAIR|locus:2040164	182	ENODL14 "early nodulin-like pr	0.295	0.587	0.407	1.4e-18
TAIR|locus:2043833	206	AT2G26720 [Arabidopsis thalian	0.273	0.480	0.450	1.4e-18
TAIR|locus:2206986	181	AT1G72230 [Arabidopsis thalian	0.223	0.447	0.451	2.5e-17
TAIR|locus:2116767	177	ENODL15 "early nodulin-like pr	0.295	0.604	0.388	5.3e-17
TAIR|locus:2085775	203	ENODL9 "early nodulin-like pro	0.267	0.477	0.397	1.1e-16
TAIR|locus:2042426	202	UCC2 "uclacyanin 2" [Arabidops	0.223	0.400	0.404	1.6e-16

TAIR|locus:2062525 UCC1 "uclacyanin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 49/105 (46%), Positives = 58/105 (55%)

Query:    20 TAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNA 79
             T  T H +G   GW V   G A+   WAA QTF VGD LVF++ A  HDV  VT+  F++
Sbjct:    21 TVATDHTIGGPSGWTV---G-ASLRTWAAGQTFAVGDNLVFSYPAAFHDVVEVTKPEFDS 76

Query:    80 CNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
             C    PL    N  + V LT  G  YFIC  PGHC  G KL +NV
Sbjct:    77 CQAVKPLITFANGNSLVPLTTPGKRYFICGMPGHCSQGMKLEVNV 121

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2151069 AT5G26330 [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 44/98 (44%), Positives = 60/98 (61%)

Query:    27 VGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPL 86
             VGD+ GW    N    Y  WA+ +TF +GDT++F +    H+V RVT   + +CNT+ P+
Sbjct:    26 VGDSAGWTTIAN--VDYKLWASTKTFHIGDTVLFEYNPQFHNVMRVTHPMYRSCNTSKPI 83

Query:    87 SRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
             S  T    S+TLT  G H+F C  PGHCL GQKL ++V
Sbjct:    84 STFTTGNDSITLTNHGHHFFFCGVPGHCLAGQKLDLHV 121

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2149249 BCB "blue-copper-binding protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 45/98 (45%), Positives = 58/98 (59%)

Query:    27 VGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPL 86
             VGD   W  P + P  Y+ WA  +TF VGD L F+FAAG HDV  V++++F  C    P+
Sbjct:    27 VGDDTEWTRPMD-PEFYTTWATGKTFRVGDELEFDFAAGRHDVAVVSEAAFENCEKEKPI 85

Query:    87 SRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
             S  T  P  + L  +GP YFIC+   HC  GQKL+I V
Sbjct:    86 SHMTVPPVKIMLNTTGPQYFICTVGDHCRFGQKLSITV 123

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0006979 "response to oxidative stress" evidence=RCA;TAS

GO:0015690 "aluminum cation transport" evidence=IMP

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0009620 "response to fungus" evidence=RCA

GO:0009646 "response to absence of light" evidence=IEP;RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TAIR|locus:2052866 AT2G31050 [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 47/106 (44%), Positives = 58/106 (54%)

Query:    19 STAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFN 78
             S   T H VGD+ GW +       Y  WA+  TF VGD+LVF +    HDVT VT + + 
Sbjct:    23 SVGGTVHKVGDSDGWTIMS---VNYETWASTITFQVGDSLVFKYNKDFHDVTEVTHNDYE 79

Query:    79 ACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
              C  + PL+R       V LT  G  +FIC FPGHC  GQKL I+V
Sbjct:    80 MCEPSKPLARYETGSDIVILTKPGLQHFICGFPGHCDMGQKLQIHV 125

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2040164 ENODL14 "early nodulin-like protein 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 44/108 (40%), Positives = 61/108 (56%)

Query:    18 SSTAQTRHVVGDALG-WIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSS 76
             S  A     VG   G W +PP+   +++ WA    F VGD +VF + +G   V  VT+ +
Sbjct:    24 SLAAANEVTVGGKSGDWKIPPSSSYSFTEWAQKARFKVGDFIVFRYESGKDSVLEVTKEA 83

Query:    77 FNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
             +N+CNTT+PL+  T+    V L  SGP YFI    GHC  GQKL++ V
Sbjct:    84 YNSCNTTNPLANYTDGETKVKLDRSGPFYFISGANGHCEKGQKLSLVV 131

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

TAIR|locus:2043833 AT2G26720 [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 46/102 (45%), Positives = 59/102 (57%)

Query:    23 TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNT 82
             T H VG+  GW +   G   Y  WA+++ F VGDTLVF +    HDVT VT + F  C +
Sbjct:    27 TVHKVGNTKGWTMI--G-GDYEAWASSRVFQVGDTLVFAYNKDYHDVTEVTHNDFEMCES 83

Query:    83 TSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
             + PL R      S++LT  G  +FIC  PGHC  GQKL I+V
Sbjct:    84 SKPLRRYKTGSDSISLTKPGLQHFICGVPGHCKKGQKLQIHV 125

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2206986 AT1G72230 [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 37/82 (45%), Positives = 53/82 (64%)

Query:    43 YSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASG 102
             YS+ A  ++F VGDT+VFN+ AG H V  V++S + +C   + +S  ++   S+ L   G
Sbjct:    37 YSSLATGKSFAVGDTIVFNYGAG-HTVDEVSESDYKSCTLGNAISSDSSGTTSIALKTPG 95

Query:   103 PHYFICSFPGHCLGGQKLAINV 124
             PHYFIC  PGHC GG KL++ V
Sbjct:    96 PHYFICGIPGHCTGGMKLSVIV 117

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2116767 ENODL15 "early nodulin-like protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 42/108 (38%), Positives = 58/108 (53%)

Query:    18 SSTAQTRHVVGDALG-WIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSS 76
             SS       VG   G W +PP+   +++ WA    F VGD +VF + AG   V +VT+ +
Sbjct:    20 SSVNANEVTVGGKSGDWKIPPSSSFSFNEWAQKARFKVGDFIVFKYEAGKDSVLQVTREA 79

Query:    77 FNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
             +  CNTTSP +  T+    V L  +GP YF+    GHC  GQKL + V
Sbjct:    80 YEKCNTTSPKASYTDGNTKVKLDQAGPVYFVSGTEGHCQKGQKLRLVV 127

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0051225 "spindle assembly" evidence=RCA

TAIR|locus:2085775 ENODL9 "early nodulin-like protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 39/98 (39%), Positives = 58/98 (59%)

Query:    27 VGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPL 86
             VG A GW VP +G   YS WA    F +GD+L+F + +    V +VT+ ++++CNT SP 
Sbjct:    32 VGGATGWTVP-SGSQVYSQWAEQSRFQIGDSLLFVYQSNQDSVLQVTRDAYDSCNTDSPT 90

Query:    87 SRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
             ++  +   SVTL  SGP+YFI     +C   +KL + V
Sbjct:    91 AKFADGKTSVTLNHSGPYYFISGNKDNCKKNEKLVVIV 128

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2042426 UCC2 "uclacyanin 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
 Identities = 34/84 (40%), Positives = 49/84 (58%)

Query:    43 YSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASG 102
             YS WA  +TF VGD L F + + +H V  V ++ ++ C+ +S     ++    + L   G
Sbjct:    42 YSGWATGKTFRVGDILEFKYGS-SHTVDVVDKAGYDGCDASSSTENHSDGDTKIDLKTVG 100

Query:   103 PHYFICSFPGHCL--GGQKLAINV 124
              +YFICS PGHC   GG KLA+NV
Sbjct:   101 INYFICSTPGHCRTNGGMKLAVNV 124

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	362
pfam02298	84	pfam02298, Cu_bind_like, Plastocyanin-like domain	4e-35
pfam02298	84	pfam02298, Cu_bind_like, Plastocyanin-like domain	5e-33
PLN03148	167	PLN03148, PLN03148, Blue copper-like protein; Prov	1e-14
PLN03148	167	PLN03148, PLN03148, Blue copper-like protein; Prov	2e-14
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-10
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-09
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	9e-09
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-08
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	3e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	6e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	6e-08
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	8e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-07
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-07
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	1e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-07
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	8e-07
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	1e-06
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	1e-06
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	1e-06
PHA03269	566	PHA03269, PHA03269, envelope glycoprotein C; Provi	1e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-06
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	2e-06
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	2e-06
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	5e-06
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	5e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	7e-06
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	9e-06
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	9e-06
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	1e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	1e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	1e-05
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-05
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-05
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	2e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-05
PRK05641	153	PRK05641, PRK05641, putative acetyl-CoA carboxylas	2e-05
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	3e-05
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	3e-05
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	3e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-05
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	5e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	7e-05
PRK05641	153	PRK05641, PRK05641, putative acetyl-CoA carboxylas	7e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	8e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	8e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	8e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	8e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	9e-05
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	1e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	1e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-04
pfam04652	315	pfam04652, DUF605, Vta1 like	1e-04
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	1e-04
PRK12757	256	PRK12757, PRK12757, cell division protein FtsN; Pr	1e-04
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	1e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	2e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-04
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	2e-04
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	2e-04
COG3147	226	COG3147, DedD, Uncharacterized protein conserved i	2e-04
PRK14960	702	PRK14960, PRK14960, DNA polymerase III subunits ga	2e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	3e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-04
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	3e-04
PHA01929	306	PHA01929, PHA01929, putative scaffolding protein	3e-04
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	3e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-04
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	4e-04
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	4e-04
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	4e-04
PRK11901	327	PRK11901, PRK11901, hypothetical protein; Reviewed	4e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	5e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	5e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	5e-04
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	5e-04
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	5e-04
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	5e-04
TIGR01348	546	TIGR01348, PDHac_trf_long, pyruvate dehydrogenase	5e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	6e-04
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	6e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	6e-04
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	6e-04
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	6e-04
PRK05996	423	PRK05996, motB, flagellar motor protein MotB; Vali	6e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	7e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	7e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	7e-04
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	8e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	9e-04
pfam04625	407	pfam04625, DEC-1_N, DEC-1 protein, N-terminal regi	9e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.001
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	0.001
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	0.001
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.001
PHA03269	566	PHA03269, PHA03269, envelope glycoprotein C; Provi	0.001
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.001
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	0.001
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.001
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	0.001
PRK01973	271	PRK01973, PRK01973, septum formation inhibitor; Re	0.001
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	0.001
PRK05704	407	PRK05704, PRK05704, dihydrolipoamide succinyltrans	0.001
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	0.001
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	0.001
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.002
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.002
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.002
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.002
PHA03269	566	PHA03269, PHA03269, envelope glycoprotein C; Provi	0.002
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.002
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.002
PRK05641	153	PRK05641, PRK05641, putative acetyl-CoA carboxylas	0.002
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.002
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.002
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	0.002
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	0.002
TIGR03354	396	TIGR03354, VI_FHA, type VI secretion system FHA do	0.002
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	0.002
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	0.002
pfam05616	502	pfam05616, Neisseria_TspB, Neisseria meningitidis	0.002
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	0.002
PRK12727	559	PRK12727, PRK12727, flagellar biosynthesis regulat	0.002
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.003
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.003
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.003
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.003
PRK05641	153	PRK05641, PRK05641, putative acetyl-CoA carboxylas	0.003
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	0.003
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	0.003
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	0.003
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	0.003
pfam12200	124	pfam12200, DUF3597, Domain of unknown function (DU	0.003
PRK13729	475	PRK13729, PRK13729, conjugal transfer pilus assemb	0.003
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	0.003
COG3889	872	COG3889, COG3889, Predicted solute binding protein	0.003
PHA03201	318	PHA03201, PHA03201, uracil DNA glycosylase; Provis	0.003
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	0.004
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	0.004
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	0.004
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	0.004
pfam05616	502	pfam05616, Neisseria_TspB, Neisseria meningitidis	0.004
PRK12373	400	PRK12373, PRK12373, NADH dehydrogenase subunit E;	0.004
PRK06302	155	PRK06302, PRK06302, acetyl-CoA carboxylase biotin	0.004
pfam05887	145	pfam05887, Trypan_PARP, Procyclic acidic repetitiv	0.004
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	0.004
PRK09537	417	PRK09537, pylS, pyrolysyl-tRNA synthetase; Reviewe	0.004

>gnl|CDD|216965 pfam02298, Cu_bind_like, Plastocyanin-like domain

 Score =  123 bits (310), Expect = 4e-35
 Identities = 45/86 (52%), Positives = 50/86 (58%), Gaps = 2/86 (2%)

Query: 206 WTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNP 265
           WTVP NA   Y  WA    F VGD LVF+Y    H+VVEVTKA Y+SCN+S  I   T  
Sbjct: 1   WTVPLNAD--YTLWASGKTFRVGDTLVFNYDKGFHNVVEVTKADYESCNTSKPIRTYTTG 58

Query: 266 PTRITLGTAGEHYFFCTFPGHCSAGQ 291
              I L   G+HYF C  PGHC  GQ
Sbjct: 59  NDIIPLTKPGQHYFICGVPGHCKGGQ 84

This family represents a domain found in flowering plants related to the copper binding protein plastocyanin. Some members of this family may not bind copper due to the lack of key residues. Length = 84

>gnl|CDD|216965 pfam02298, Cu_bind_like, Plastocyanin-like domain

 Score =  117 bits (296), Expect = 5e-33
 Identities = 39/82 (47%), Positives = 51/82 (62%)

Query: 37  PNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASV 96
               A Y+ WA+ +TF VGDTLVFN+  G H+V  VT++ + +CNT+ P+   T     +
Sbjct: 3   VPLNADYTLWASGKTFRVGDTLVFNYDKGFHNVVEVTKADYESCNTSKPIRTYTTGNDII 62

Query: 97  TLTASGPHYFICSFPGHCLGGQ 118
            LT  G HYFIC  PGHC GGQ
Sbjct: 63  PLTKPGQHYFICGVPGHCKGGQ 84

This family represents a domain found in flowering plants related to the copper binding protein plastocyanin. Some members of this family may not bind copper due to the lack of key residues. Length = 84

>gnl|CDD|178693 PLN03148, PLN03148, Blue copper-like protein; Provisional

 Score = 70.7 bits (173), Expect = 1e-14
 Identities = 42/162 (25%), Positives = 61/162 (37%), Gaps = 13/162 (8%)

Query: 4   RFFLAAIAIAALVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFA 63
              L          ++TA T H+VG   GW    N    Y+ WA NQTF VGD + F + 
Sbjct: 3   HLLLFCFFALFSASATTA-TDHIVGANKGW----NPGINYTLWANNQTFYVGDLISFRYQ 57

Query: 64  AGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAIN 123
              ++V  V Q+ ++ C T       T+    + L  +  +YFIC   G C  G K+ I 
Sbjct: 58  KTQYNVFEVNQTGYDNCTTEGAAGNWTSGKDFIPLNKAKRYYFICG-NGQCFNGMKVTIL 116

Query: 124 VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAP 165
           V        P P  P+   + +      A             
Sbjct: 117 VH-------PLPPPPSHTAAANGAKSHSAAPAAFHKGLVALR 151

Length = 167

>gnl|CDD|178693 PLN03148, PLN03148, Blue copper-like protein; Provisional

 Score = 70.3 bits (172), Expect = 2e-14
 Identities = 45/162 (27%), Positives = 65/162 (40%), Gaps = 19/162 (11%)

Query: 198 HVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSS 257
           H+VG   GW    N  + Y  WA N  F VGD++ F Y    ++V EV +  YD+C +  
Sbjct: 23  HIVGANKGW----NPGINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEG 78

Query: 258 TISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGSSTAPSASPPSPTATPP 317
                T+    I L  A  +YF C   G C  G K+ + V       P   PPS TA   
Sbjct: 79  AAGNWTSGKDFIPLNKAKRYYFICG-NGQCFNGMKVTILV------HPLPPPPSHTAAAN 131

Query: 318 STTTNPPPQSPGGGTAPPPPNSSAKSLGAASLFTSFLVIVAG 359
                    +     AP   +    +L    L+ + +   +G
Sbjct: 132 G--------AKSHSAAPAAFHKGLVALRGLVLWMASIWFGSG 165

Length = 167

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 62.6 bits (153), Expect = 1e-10
 Identities = 24/83 (28%), Positives = 31/83 (37%)

Query: 128 GSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAP 187
           G      P++ A   + +  +P  APA     APAPAP  A  P   P  A      +AP
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96

Query: 188 TPAPTRQPATHVVGGALGWTVPP 210
              P    A      A+   V P
Sbjct: 97  AAPPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 59.9 bits (146), Expect = 1e-09
 Identities = 19/76 (25%), Positives = 25/76 (32%)

Query: 125 SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 184
               ++ A   +S       +     PAPA     APA  P+PA     A A A  P   
Sbjct: 44  PTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAA 103

Query: 185 SAPTPAPTRQPATHVV 200
           +A  PA          
Sbjct: 104 AAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 56.8 bits (138), Expect = 9e-09
 Identities = 20/82 (24%), Positives = 28/82 (34%)

Query: 133 PQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPT 192
           P  ++     + +  +   APA  P      AP PA     APA+ P P   +A   AP 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 193 RQPATHVVGGALGWTVPPNASV 214
             PA           V    + 
Sbjct: 98  APPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 29/72 (40%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 126 ARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRS 185
           A   +PAP P       + +  +P P PA  P+  PAPAP  A  PT APA AP   P  
Sbjct: 432 APAPAPAPAPP-SPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAP 490

Query: 186 APTPAPTRQPAT 197
           A  PA    PA 
Sbjct: 491 AAAPAAPAAPAA 502

Length = 824

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 56.1 bits (136), Expect = 2e-08
 Identities = 19/74 (25%), Positives = 29/74 (39%)

Query: 123 NVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPT 182
           + +A  ++ A   ++ +   +        APA  P  A APA  P      A A+AP   
Sbjct: 40  STAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAP 99

Query: 183 PRSAPTPAPTRQPA 196
           P +A   AP     
Sbjct: 100 PAAAAAAAPAAAAV 113

Length = 1228

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.8 bits (132), Expect = 3e-08
 Identities = 25/91 (27%), Positives = 31/91 (34%), Gaps = 4/91 (4%)

Query: 120 LAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPAR----TPTPAPAPAPEPATTPTPAP 175
           LA+  +      A  P +PAP       + +    R     PT A   A  P     P P
Sbjct: 340 LALGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRP 399

Query: 176 ASAPTPTPRSAPTPAPTRQPATHVVGGALGW 206
              P P P  +    P   PA    G AL W
Sbjct: 400 RGPPAPEPARSAEAPPLVAPAAAPAGLALRW 430

Length = 504

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 54.1 bits (131), Expect = 6e-08
 Identities = 23/83 (27%), Positives = 33/83 (39%)

Query: 121 AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPT 180
           A   +A  ++ A   +  A   + +  +P PAP     PA  P P  A     APA+ P 
Sbjct: 42  AAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPA 101

Query: 181 PTPRSAPTPAPTRQPATHVVGGA 203
               +AP  A      T + G A
Sbjct: 102 AAAAAAPAAAAVEDEVTPLRGAA 124

Length = 1228

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 54.2 bits (131), Expect = 6e-08
 Identities = 31/79 (39%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 121 AINVSARGSSPAPQPS-SPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAP 179
           A   +A   +PA  P  +PAP P+ + PSP         P+P PA  P+  P PAPA+AP
Sbjct: 415 AAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAP 474

Query: 180 TPTPRSAPTPAPTRQPATH 198
            PT   AP P     PA  
Sbjct: 475 EPTAAPAPAPPAAPAPAAA 493

Length = 824

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.6 bits (129), Expect = 8e-08
 Identities = 25/91 (27%), Positives = 33/91 (36%)

Query: 120 LAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAP 179
           LA   +A   + AP       +P  + P+  P       PAPA AP  A +   AP +A 
Sbjct: 362 LAFKPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAA 421

Query: 180 TPTPRSAPTPAPTRQPATHVVGGALGWTVPP 210
            P P +AP  A                  PP
Sbjct: 422 PPAPVAAPAAAAPAAAPAAAPAAVALAPAPP 452

Length = 618

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 29/78 (37%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 121 AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPT 180
           A   +A   S A    + AP P+ + P+   APA    P PAPAP PA  P     +AP 
Sbjct: 391 AGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPA 450

Query: 181 PTPRS-APTPAPTRQPAT 197
               S  P  AP+ QPA 
Sbjct: 451 GGAPSPPPAAAPSAQPAP 468

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 28/67 (41%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 130 SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATT-PTPAPASAPTPTPRSAPT 188
           SPAP+  + A Q S   P   PAPA  P  APA A  PA   P P  A+A     R+AP 
Sbjct: 427 SPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPA 486

Query: 189 PAPTRQP 195
            AP    
Sbjct: 487 AAPAPAD 493

Length = 700

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 22/87 (25%), Positives = 25/87 (28%), Gaps = 3/87 (3%)

Query: 124 VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 183
                   A  PS   P P+ ST     A A  P   P           P P + P P  
Sbjct: 365 APQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHT 424

Query: 184 RSAPTPAPTRQPATHVVGGALGWTVPP 210
              P  AP    A   V     +T P 
Sbjct: 425 ---PESAPKLTRAAIPVDEKPKYTPPA 448

Length = 585

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 52.2 bits (126), Expect = 3e-07
 Identities = 24/76 (31%), Positives = 28/76 (36%), Gaps = 1/76 (1%)

Query: 126 ARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAP-APAPEPATTPTPAPASAPTPTPR 184
           A  S+PA  P++ AP      P    APA  P PA  A A      P  A A+A      
Sbjct: 53  AAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAA 112

Query: 185 SAPTPAPTRQPATHVV 200
                 P R  A  V 
Sbjct: 113 VEDEVTPLRGAAAAVA 128

Length = 1228

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 50.8 bits (122), Expect = 8e-07
 Identities = 23/91 (25%), Positives = 31/91 (34%)

Query: 125 SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 184
            A  ++P P P+  AP          PAPA   TP    A +PA  P  A   A  P+P 
Sbjct: 675 GAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPA 734

Query: 185 SAPTPAPTRQPATHVVGGALGWTVPPNASVG 215
           +        +P             PP  +  
Sbjct: 735 ADDPVPLPPEPDDPPDPAGAPAQPPPPPAPA 765

Length = 824

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 50.3 bits (120), Expect = 8e-07
 Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 124 VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 183
            + + + PA  P+S        TPSP  +PA   + APA A E   +P+   A+A  P  
Sbjct: 80  GTGKVAPPAATPTSAP----TPTPSPPASPASGMSAAPASAVEE-KSPSEESATATAPES 134

Query: 184 RSAPTPAPTRQPA-THVVGGALGWTVPPNASVGYQ 217
            S   P+     A T VVG     T+     +GY+
Sbjct: 135 PSTSVPSSGSDAASTLVVGSERETTIEEIMEMGYE 169

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 131 PAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPA 190
           PAPQP+ P    + S   P PAP+  P  A   A  P   P    A+ P   PR    P 
Sbjct: 364 PAPQPAKPTA-AAPSPVRPTPAPSTRPKAAA-AANIPPKEPVRETATPPPVPPRPVAPPV 421

Query: 191 PTRQPA 196
           P    +
Sbjct: 422 PHTPES 427

Length = 585

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 22/70 (31%), Positives = 26/70 (37%)

Query: 125 SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 184
            A   S  P   +P   P    P+PV  P   P   P P P+P       PA  P P P 
Sbjct: 79  DAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPV 138

Query: 185 SAPTPAPTRQ 194
                APT +
Sbjct: 139 VEEKAAPTGK 148

Length = 226

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 24/87 (27%), Positives = 29/87 (33%), Gaps = 7/87 (8%)

Query: 117 GQKLAINVSARGSSPAPQPSSPAPQPSGSTPSP-VPAPARTPTPAPAPAPEPATTPTPAP 175
           G K  I       + APQPS+ A   S S       A    P  A  PA  P T     P
Sbjct: 374 GPKQHIKPVFTQPAAAPQPSA-AAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPP 432

Query: 176 ASAPTPTPRSAP-----TPAPTRQPAT 197
           A+ P   P +AP           +   
Sbjct: 433 AAVPVNPPSTAPQAVRPAQFKEEKKIP 459

Length = 614

>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional

 Score = 49.7 bits (118), Expect = 1e-06
 Identities = 34/101 (33%), Positives = 42/101 (41%), Gaps = 18/101 (17%)

Query: 119 KLAINVSARGSSPAPQP---SSPAPQPS---GSTPSPVPAPARTPTPA------PAPAPE 166
           +L  + + +   PAP P   +S AP P+    S  S  P  A+ PTPA      PAPAP 
Sbjct: 30  ELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPH 89

Query: 167 PATTPTPAPASAP------TPTPRSAPTPAPTRQPATHVVG 201
            A +  P PA AP       P    A T A     A    G
Sbjct: 90  QAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAG 130

Length = 566

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 28/81 (34%), Positives = 33/81 (40%), Gaps = 1/81 (1%)

Query: 124 VSARGSSPAPQPSSPAPQPSGSTPSPVPAPAR-TPTPAPAPAPEPATTPTPAPASAPTPT 182
           +  R        +  A  PS +  +P  APA     PA A AP PA  P PAPA AP P 
Sbjct: 381 LERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPA 440

Query: 183 PRSAPTPAPTRQPATHVVGGA 203
           P S    AP     +     A
Sbjct: 441 PPSPAGNAPAGGAPSPPPAAA 461

Length = 824

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 18/71 (25%), Positives = 23/71 (32%)

Query: 126 ARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRS 185
           A  +  A  PS      +       P PA    P P P  +P   P P       P P+ 
Sbjct: 74  AVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKP 133

Query: 186 APTPAPTRQPA 196
            P P    + A
Sbjct: 134 EPKPVVEEKAA 144

Length = 226

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 7/88 (7%)

Query: 116 GGQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAP------APEPAT 169
            GQ + ++ S   + PA  P+  AP  +  T S  PA A  P PA  P      AP  A 
Sbjct: 158 SGQSVPLDTST-TTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQAN 216

Query: 170 TPTPAPASAPTPTPRSAPTPAPTRQPAT 197
             T A  +   P       P PT Q   
Sbjct: 217 VDTAATPAPAAPATPDGAAPLPTDQAGV 244

Length = 331

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.0 bits (114), Expect = 5e-06
 Identities = 28/80 (35%), Positives = 34/80 (42%), Gaps = 6/80 (7%)

Query: 132 APQPSSPAPQPSGSTPSPVPAPARTPTPA--PAPAPEPATTPTPAPASAPT---PTPRSA 186
           AP P+        +    +P P R P PA   AP   PA  P+PA A  P    P  RSA
Sbjct: 381 APSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSA 440

Query: 187 PTP-APTRQPATHVVGGALG 205
           P P +P      +V  G  G
Sbjct: 441 PLPPSPQASAPRNVASGKPG 460

Length = 620

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.9 bits (115), Expect = 5e-06
 Identities = 18/64 (28%), Positives = 22/64 (34%)

Query: 135 PSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQ 194
           P++P P+P     S  PA +   T AP  A  P   P   P  A  P    A     T  
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS 420

Query: 195 PATH 198
               
Sbjct: 421 QLLA 424

Length = 647

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 54/237 (22%), Positives = 78/237 (32%), Gaps = 23/237 (9%)

Query: 124 VSARGSSPAPQPSS-PAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPT 182
             A    PAP P+  PAP           AP+  P  AP+  P PA    P P +AP P 
Sbjct: 424 APAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPA 483

Query: 183 PRSAPTP-APTRQPATHVVGGALGWTVPPNASVGYQNWA------RNNNFSVGDILVFDY 235
           P +AP P A    PA              +A+   + W          +     IL+ + 
Sbjct: 484 PPAAPAPAAAPAAPAAPAAPAG-----ADDAATLRERWPEILAAVPKRSRKTWAILLPE- 537

Query: 236 PARVHDVVEVT-KAAYDSCNSSSTISKSTNPP---TRITLGTAGEHYFFCTFPGHCSAGQ 291
            A V  V   T    + +   +   +   N     T +     G+            A  
Sbjct: 538 -ATVLGVRGDTLVLGFSTGGLARRFASPGNAEVLVTALAEELGGDWQVEAVVGPAPGAAG 596

Query: 292 KLAVNVTGGSSTAPSASPPSPTATPPSTTTNPPPQSPGGGTAPPPPNSSAKSLGAAS 348
                    S     A+ P+  A P +    P   +P G  A P   S+A + G A+
Sbjct: 597 GEGPPAPASSGPPEEAARPAAPAAPAA----PAAPAPAGAAAAPAEASAAPAPGVAA 649

Length = 824

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.2 bits (113), Expect = 9e-06
 Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 1/64 (1%)

Query: 127 RGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSA 186
             ++P P+P  P PQ +    S     A T   AP  AP     P  AP  AP       
Sbjct: 360 HPAAPLPEPEVP-PQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPET 418

Query: 187 PTPA 190
            +  
Sbjct: 419 TSQL 422

Length = 647

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.2 bits (113), Expect = 9e-06
 Identities = 16/69 (23%), Positives = 19/69 (27%)

Query: 125 SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 184
           S  G    P     AP    +  +P  A A      PA A         A A+ P P   
Sbjct: 393 SPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPAAA 452

Query: 185 SAPTPAPTR 193
             P      
Sbjct: 453 PQPAVRLNS 461

Length = 598

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 7/82 (8%)

Query: 124 VSARGSSPA-PQPSSPAPQP-----SGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPAS 177
             A   +PA P+ ++PA  P     +   P+  PA A +   AP  A  PA    PA A 
Sbjct: 374 APAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAA- 432

Query: 178 APTPTPRSAPTPAPTRQPATHV 199
           AP   P +AP            
Sbjct: 433 APAAAPAAAPAAVALAPAPPAQ 454

Length = 618

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 46/227 (20%), Positives = 67/227 (29%), Gaps = 12/227 (5%)

Query: 129  SSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTP--TPAPASAPTPTPRSA 186
              PAP+PS PA       P   P  AR   P           P     P +     P  +
Sbjct: 2571 PRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPS 2630

Query: 187  PTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVT 246
            P+PA                    + + G  +  R              P R        
Sbjct: 2631 PSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPR-----R 2685

Query: 247  KAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGSSTAPS 306
            +AA  +  S ++++    PP                 PG  +A Q         +  A  
Sbjct: 2686 RAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVP 2745

Query: 307  ASP-----PSPTATPPSTTTNPPPQSPGGGTAPPPPNSSAKSLGAAS 348
            A P     P+  A PP+T   P P  P    A PP   +  ++ + S
Sbjct: 2746 AGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLS 2792

Length = 3151

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 19/105 (18%), Positives = 30/105 (28%), Gaps = 4/105 (3%)

Query: 129 SSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPE----PATTPTPAPASAPTPTPR 184
              A   S+    P  S+P     P+    P+          P++  +  P  +P     
Sbjct: 174 GEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTN 233

Query: 185 SAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGD 229
            +P P P   P   V       T  P         A     ++ D
Sbjct: 234 PSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLDD 278

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 126 ARGSS--PAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 183
            RG+   P+    +P P    + P     P     PA   A  PA  P P  A+AP P  
Sbjct: 378 ERGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAP-PAR 436

Query: 184 RSAPTPAPT 192
            + P  A +
Sbjct: 437 SADPAAAAS 445

Length = 576

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 24/102 (23%), Positives = 31/102 (30%), Gaps = 1/102 (0%)

Query: 130 SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTP 189
           + A    +PA  P+ +  +P   PA  P    A     A    PA A A      + P  
Sbjct: 395 AQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQ 454

Query: 190 APTRQPATHV-VGGALGWTVPPNASVGYQNWARNNNFSVGDI 230
           A     A  V V           A       AR      GD+
Sbjct: 455 AAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEGDV 496

Length = 618

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 20/66 (30%), Positives = 25/66 (37%)

Query: 131 PAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPA 190
            AP  ++ A   + +     PAP        A A  P   P PAPA A  P   + P  A
Sbjct: 408 AAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAA 467

Query: 191 PTRQPA 196
             R  A
Sbjct: 468 GPRPVA 473

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 1/94 (1%)

Query: 121 AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPAR-TPTPAPAPAPEPATTPTPAPASAP 179
           A   +A   +  P   + AP  + +  +   APAR +P P    A   A+   P  A AP
Sbjct: 391 APAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAP 450

Query: 180 TPTPRSAPTPAPTRQPATHVVGGALGWTVPPNAS 213
            P P +AP  A     A      A     P  A+
Sbjct: 451 APAPAAAPAAAARPAAAGPRPVAAAAAAAPARAA 484

Length = 700

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 20/91 (21%), Positives = 27/91 (29%), Gaps = 7/91 (7%)

Query: 124 VSARGSSPAPQPSSPAPQPSGSTPSPV-----PAPARTPTPAPAP-APEPATTPTPAPAS 177
             A+ ++ AP P  P P PS    +       P      T  P P  P P   P P    
Sbjct: 367 QPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPE 426

Query: 178 APTPTPRSAPTPAPTRQPATHVVGGALGWTV 208
           +     R+A  P   +   T           
Sbjct: 427 SAPKLTRAA-IPVDEKPKYTPPAPPKEEEKA 456

Length = 585

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 14/88 (15%), Positives = 24/88 (27%), Gaps = 5/88 (5%)

Query: 121 AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPART-----PTPAPAPAPEPATTPTPAP 175
           A  +      P     + + Q + +  + V  P        P  AP  AP      T + 
Sbjct: 362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQ 421

Query: 176 ASAPTPTPRSAPTPAPTRQPATHVVGGA 203
             A     + A      ++        A
Sbjct: 422 LLAARQQLQRAQGATKAKKSEPAAASRA 449

Length = 647

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 17/59 (28%), Positives = 21/59 (35%)

Query: 133 PQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAP 191
           P    P P+    + +P  +   T  P  A AP  A    P PASAP   P        
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETT 419

Length = 647

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 12/77 (15%), Positives = 21/77 (27%)

Query: 124 VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 183
            +   ++P    + P        P+  P  A         +   A       A   T   
Sbjct: 380 SAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAK 439

Query: 184 RSAPTPAPTRQPATHVV 200
           +S P  A   +P    +
Sbjct: 440 KSEPAAASRARPVNSAL 456

Length = 647

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 7/83 (8%)

Query: 115 LGGQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPA 174
            GG   A   +A  ++ A + +   P+      +P P P     P P  A +P   P PA
Sbjct: 120 TGGAPPAAAPAAAAAAKAEKTTPEKPKA----AAPTPEPPAASKPTPPAAAKP---PEPA 172

Query: 175 PASAPTPTPRSAPTPAPTRQPAT 197
           PA+ P PTP +   P  TR P +
Sbjct: 173 PAAKPPPTPVARADPRETRVPMS 195

Length = 418

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 21/78 (26%), Positives = 32/78 (41%)

Query: 115 LGGQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPA 174
           L    ++   +A   +      +P+P P+   PS         TP+P PA      P PA
Sbjct: 360 LPSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPA 419

Query: 175 PASAPTPTPRSAPTPAPT 192
             + P+PTP +    AP 
Sbjct: 420 EPTEPSPTPPANAANAPP 437

Length = 620

>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 20/47 (42%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 148 SPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRS-----APTP 189
           S V     TP PAPAPA   A TP    A AP P         AP P
Sbjct: 46  SAVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAPASAGENVVTAPMP 92

Length = 153

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 20/91 (21%), Positives = 27/91 (29%), Gaps = 6/91 (6%)

Query: 121 AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASA-- 178
           A   +A  S+PA  P++  P P  +  +  PA A    PA                 A  
Sbjct: 404 AAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIP 463

Query: 179 ----PTPTPRSAPTPAPTRQPATHVVGGALG 205
               P P   SA         A  +     G
Sbjct: 464 VRVAPEPAVASAAPAPAAAPAAARLTPTEEG 494

Length = 618

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 137 SPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAP-TPTPRSAPTPAPT 192
                   + P+  P  A TPTP+P  +P    +  PA A    +P+  SA   AP 
Sbjct: 77  PKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPE 133

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 19/66 (28%), Positives = 21/66 (31%), Gaps = 3/66 (4%)

Query: 130 SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTP-APASAPTPTPRSAPT 188
           SP+P  SS A QP  S P     PA TP       P       P     A  P       
Sbjct: 399 SPSPSQSSAAAQP--SAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEK 456

Query: 189 PAPTRQ 194
             P  +
Sbjct: 457 KIPVSK 462

Length = 614

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 46.1 bits (109), Expect = 3e-05
 Identities = 47/233 (20%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 121  AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPT 180
            A+   AR     PQ + P            PAP     P       P  +P+PA      
Sbjct: 2581 AVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDP 2640

Query: 181  PTPRSAPTPA-PTRQPATHVVG---GALGWTVPPNASVGYQNWARNNNFSVGDILVFDYP 236
              P + P P  P   PA   V     A        AS   Q   R               
Sbjct: 2641 HPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRR--------------R 2686

Query: 237  ARVHDVVEVTKAA--YDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLA 294
            A    V  +T  A       +      +    T +  G A         P   +     A
Sbjct: 2687 AARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPA 2746

Query: 295  VNVTGGSSTAPSASPPSPTATPPSTTTNPPPQSPGGGTAPPPPNSSAKSLGAA 347
               T G    P A PP+    P       P   P      P   S ++S  + 
Sbjct: 2747 GPATPGGPARP-ARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESL 2798

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 46.1 bits (109), Expect = 3e-05
 Identities = 25/95 (26%), Positives = 31/95 (32%), Gaps = 1/95 (1%)

Query: 121  AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPT 180
            A   +A    P  + + PA   S +    +P       P P   P P   P P P   P 
Sbjct: 2872 AAKPAAPARPPVRRLARPAVSRS-TESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQ 2930

Query: 181  PTPRSAPTPAPTRQPATHVVGGALGWTVPPNASVG 215
            P P   P P P   P T   G        P   +G
Sbjct: 2931 PPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLG 2965

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 21/77 (27%), Positives = 23/77 (29%)

Query: 124 VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 183
            S  G     +    AP      P+P    A        PAP PA TP    A  P   P
Sbjct: 662 ASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQP 721

Query: 184 RSAPTPAPTRQPATHVV 200
             A   A    PA    
Sbjct: 722 PQAAQGASAPSPAADDP 738

Length = 824

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 25/86 (29%), Positives = 30/86 (34%), Gaps = 1/86 (1%)

Query: 125 SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 184
                   P    PA  P+   P+PVPA A  P   P P+ EP +   PAP     P   
Sbjct: 399 PGGDDQTRPAAPVPASVPT-PAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAP 457

Query: 185 SAPTPAPTRQPATHVVGGALGWTVPP 210
           +          AT     AL    PP
Sbjct: 458 ATEPAPDDPDDATRKALDALRERRPP 483

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 50/208 (24%), Positives = 63/208 (30%), Gaps = 15/208 (7%)

Query: 131  PAPQPSSPA-PQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTP 189
            PAP     A P P G   +   +PA    PAP   P    TP      A  PT    P P
Sbjct: 2710 PAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAP 2769

Query: 190  APTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAA 249
            AP   PA    G     T P  AS+     +R +  S  D                  A+
Sbjct: 2770 APPAAPAA---GPPRRLTRPAVASLSE---SRESLPSPWDPADPPAAVLAPAAALPPAAS 2823

Query: 250  YDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGSSTAPSASP 309
                    T ++ T PP        G         G  + G  +        S +P+A P
Sbjct: 2824 PAGPLPPPTSAQPTAPPP-----PPGPPPPSLPLGGSVAPGGDVRRR---PPSRSPAAKP 2875

Query: 310  PSPTATPPSTTTNPPPQSPGGGTAPPPP 337
             +P   P      P         A PP 
Sbjct: 2876 AAPARPPVRRLARPAVSRSTESFALPPD 2903

Length = 3151

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 23/83 (27%), Positives = 28/83 (33%), Gaps = 3/83 (3%)

Query: 136 SSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQP 195
           S P    + + P+  PAPA      P  +  PA    PAPA  P      AP+ A     
Sbjct: 161 SVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTA 220

Query: 196 ATHV---VGGALGWTVPPNASVG 215
           AT          G    P    G
Sbjct: 221 ATPAPAAPATPDGAAPLPTDQAG 243

Length = 331

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 44.5 bits (105), Expect = 7e-05
 Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 127 RGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSA 186
             ++P  +      Q   + P P   P   PTP PA AP P  TP P    +  P     
Sbjct: 390 HAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLP----SAEPGSDDG 445

Query: 187 PTPAPTRQPAT 197
           P P P RQP  
Sbjct: 446 PAPPPERQPPA 456

Length = 3151

>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 42.2 bits (99), Expect = 7e-05
 Identities = 16/34 (47%), Positives = 17/34 (50%)

Query: 159 PAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPT 192
                 P PA  P PA  SAPTP   +AP PAP 
Sbjct: 47  AVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAPA 80

Length = 153

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 24/97 (24%), Positives = 27/97 (27%), Gaps = 1/97 (1%)

Query: 117 GQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTP-TPAP 175
           G    +      +  A     P    S   P     PA    PA   AP PA     PA 
Sbjct: 579 GGDWQVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAE 638

Query: 176 ASAPTPTPRSAPTPAPTRQPATHVVGGALGWTVPPNA 212
           ASA      +AP   P          G  GW      
Sbjct: 639 ASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGG 675

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.1 bits (104), Expect = 8e-05
 Identities = 23/81 (28%), Positives = 27/81 (33%), Gaps = 3/81 (3%)

Query: 136 SSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPT---PAPT 192
           + PA   +     P PA A     APAPA  PA       A+A      +AP    PAP 
Sbjct: 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPE 431

Query: 193 RQPATHVVGGALGWTVPPNAS 213
              A            P  A 
Sbjct: 432 ALAAARQASARGPGGAPAPAP 452

Length = 700

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.1 bits (105), Expect = 8e-05
 Identities = 18/94 (19%), Positives = 27/94 (28%), Gaps = 8/94 (8%)

Query: 121 AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPA-------RTPTPAPAPAPEPATTPTP 173
           A+      + P P  S+P   P+   P              R      A   EPA     
Sbjct: 390 AVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRA 449

Query: 174 APASAPTPTPRSAPTPAPTRQPATHVVGGALGWT 207
            P ++      ++  PAP+          A  W 
Sbjct: 450 RPVNSALE-RLASVRPAPSALEKAPAKKEAYRWK 482

Length = 647

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 124 VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTP-APASAPTPT 182
            SA   +P P   +  P P+ + P P  APAR     PAPAP P     P A ++ P   
Sbjct: 385 PSAAWGAPTPAAPAAPP-PAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAA 443

Query: 183 PRSAPT 188
             +   
Sbjct: 444 ASAGDR 449

Length = 576

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 1/80 (1%)

Query: 117 GQKLAIN-VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAP 175
           G+ + +N  S  GS+     + P PQ S   P+P P   +    AP P P P        
Sbjct: 503 GRSIKLNLESQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQA 562

Query: 176 ASAPTPTPRSAPTPAPTRQP 195
           +S       +  +P P    
Sbjct: 563 SSNAPAQIPADSSPPPPIPE 582

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 22/64 (34%), Positives = 29/64 (45%)

Query: 119 KLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASA 178
                 +        QPS+P  + + +TPSP PA A  P P PA   EP+ TP    A+A
Sbjct: 376 NPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANA 435

Query: 179 PTPT 182
           P   
Sbjct: 436 PPSL 439

Length = 620

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 19/72 (26%), Positives = 25/72 (34%)

Query: 126 ARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRS 185
           A G     Q   P      + P P  A A +P+P+ + A    + P  A   A TP   S
Sbjct: 369 ASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVS 428

Query: 186 APTPAPTRQPAT 197
              PA       
Sbjct: 429 VDPPAAVPVNPP 440

Length = 614

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 14/62 (22%), Positives = 18/62 (29%)

Query: 124 VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 183
               G      P++ A   + +       PA      P  A   A  P PA A  P    
Sbjct: 400 GPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPAAAPQPAVRL 459

Query: 184 RS 185
            S
Sbjct: 460 NS 461

Length = 598

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 133  PQPSSPAPQPSGSTPSPV-----PAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAP 187
            P   SPA +P+     PV     PA +R+      P  +P   P P     P P P+  P
Sbjct: 2866 PPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPP 2925

Query: 188  TPAPTRQPAT 197
             P P   P  
Sbjct: 2926 PPQPQPPPPP 2935

Length = 3151

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 35/119 (29%), Positives = 45/119 (37%), Gaps = 6/119 (5%)

Query: 109 SFPGHCLGGQKLAINVSARGSSPAPQ-PSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEP 167
           SFPG        + +     S   P  PS P    S S  S  PAP+   +  P P+PE 
Sbjct: 171 SFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPES 230

Query: 168 ATTPTPAPASAPTPTPRSA-----PTPAPTRQPATHVVGGALGWTVPPNASVGYQNWAR 221
            T P+P P  A  P P         T  PT   A+       G T+  +A    Q  A+
Sbjct: 231 PTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLDDDAIAKAQKHAK 289

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 16/69 (23%), Positives = 19/69 (27%), Gaps = 3/69 (4%)

Query: 132 APQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAP 191
                +P    +   P P    A   T A APA        P       P     P PA 
Sbjct: 15  EQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDK---PRRERKPKPAS 71

Query: 192 TRQPATHVV 200
             +    VV
Sbjct: 72  LWKLEDFVV 80

Length = 475

>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 14/61 (22%), Positives = 20/61 (32%)

Query: 133 PQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPT 192
            Q     P  + + P PV  P +T  P     P P  T   AP +     P+        
Sbjct: 123 QQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAEKEKE 182

Query: 193 R 193
           +
Sbjct: 183 Q 183

Length = 256

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 23/90 (25%), Positives = 30/90 (33%), Gaps = 4/90 (4%)

Query: 125 SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 184
             +    A  P   AP+P+   P PV  PA  P     P  +P    +P  A AP P   
Sbjct: 104 PVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQP-QPEQPLQQPV---SPQVAPAPQPVHS 159

Query: 185 SAPTPAPTRQPATHVVGGALGWTVPPNASV 214
           +        QPA  V          P   +
Sbjct: 160 APQPAQQAFQPAEPVAAPQPEPVAEPAPVM 189

Length = 333

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 47/256 (18%), Positives = 81/256 (31%), Gaps = 19/256 (7%)

Query: 108 CSFPGHCLGGQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPA---PAPA 164
              PG      +     +   S+ AP   +    P+   PS    P  TP PA   P+PA
Sbjct: 72  PPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPA 131

Query: 165 PEPATTPTPAPASAPTPTPRSAPTPAPTRQPATHVV---GGALGWTVPPNASVGYQNWAR 221
           P+ +    P  +  P P        A     A+        AL  + P   +    +   
Sbjct: 132 PDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPA 191

Query: 222 NNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFC 281
               S         P R    +    +A  S  + +    + +     +  ++      C
Sbjct: 192 EPPPSTPPAAASPRPPRRSSPI----SASASSPAPAPGRSAADDAGASSSDSSSSESSGC 247

Query: 282 TFPGHCSAGQKLAVNVT---------GGSSTAPSASPPSPTATPPSTTTNPPPQSPGGGT 332
            +             +T         G +  +    P S +++P   + +P P SPG G 
Sbjct: 248 GWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGP 307

Query: 333 APPPPNSSAKSLGAAS 348
           AP  P +S+ S  +  
Sbjct: 308 APSSPRASSSSSSSRE 323

Length = 1352

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 23/96 (23%), Positives = 30/96 (31%), Gaps = 5/96 (5%)

Query: 125 SARGSSPAPQPSSPAPQPSGSTPS--PVPAPARTPTPAPAPAPEPA---TTPTPAPASAP 179
           +A   + A    +P        P    VP  +      PA A   A     P PAPA+  
Sbjct: 632 AAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPA 691

Query: 180 TPTPRSAPTPAPTRQPATHVVGGALGWTVPPNASVG 215
            P   +   PAP                 PP A+ G
Sbjct: 692 APAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQG 727

Length = 824

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 22/74 (29%), Positives = 26/74 (35%), Gaps = 3/74 (4%)

Query: 127 RGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSA 186
           +   P+P      P   G  P    APA    P  A A   A  P  A A+ P     +A
Sbjct: 388 QEGPPSPGGGGGGPPGGGGAP---GAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAA 444

Query: 187 PTPAPTRQPATHVV 200
             PAP   P   V 
Sbjct: 445 APPAPAAAPQPAVR 458

Length = 598

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 25/85 (29%), Positives = 30/85 (35%)

Query: 130  SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTP 189
            + +    S A  P      P P     P P P P P P   P P P   P P       P
Sbjct: 2890 AVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDP 2949

Query: 190  APTRQPATHVVGGALGWTVPPNASV 214
            A   +P+  V    LG  VP   +V
Sbjct: 2950 AGAGEPSGAVPQPWLGALVPGRVAV 2974

Length = 3151

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 131 PAPQPSSPAPQPSGSTPS--PVPAPARTP-TPAPAPAPEPAT-TPTPAPASAPTPTPRSA 186
            AP+P+ PAPQP            P + P +P  APAP+P    P PA  +     P +A
Sbjct: 117 HAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAA 176

Query: 187 PTPAPTRQPATHVVGGALGWTV 208
           P P P  +PA  +        V
Sbjct: 177 PQPEPVAEPAPVMDKPKRKEAV 198

Length = 333

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 22/83 (26%), Positives = 27/83 (32%), Gaps = 8/83 (9%)

Query: 130 SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTP 189
            PA QP    P     +P   PAP      AP PA +      P  A  P P    AP  
Sbjct: 131 QPAYQPQPEQPLQQPVSPQVAPAPQPVH-SAPQPAQQAFQPAEPVAAPQPEPVAEPAPVM 189

Query: 190 APTRQPAT----HVV---GGALG 205
              ++       +V    G  L 
Sbjct: 190 DKPKRKEAVIVMNVAAHHGSELN 212

Length = 333

>gnl|CDD|225689 COG3147, DedD, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 24/66 (36%), Positives = 30/66 (45%)

Query: 129 SSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPT 188
           ++ +  P   A  P  STP+ VP  A+TP P   P   PA      P   P P P + P 
Sbjct: 85  AAASVDPQPVAQPPVESTPAGVPVAAQTPKPVKPPKQPPAGAVPAKPTPKPEPKPVAEPA 144

Query: 189 PAPTRQ 194
            APT Q
Sbjct: 145 AAPTGQ 150

Length = 226

>gnl|CDD|237868 PRK14960, PRK14960, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 125 SARGSSP--APQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAP 179
           +A+  +P  A QP     QP+   P P P P   P P P P PEP   P P P   P
Sbjct: 388 TAQEITPVSAVQPVEVISQPAMVEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPQP 444

Length = 702

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 23/77 (29%), Positives = 27/77 (35%), Gaps = 1/77 (1%)

Query: 121 AINVSARGSSPAPQP-SSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAP 179
           A   SARG   AP P  +PA  P+ +       P      A A     A    PAPA   
Sbjct: 436 ARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDD 495

Query: 180 TPTPRSAPTPAPTRQPA 196
            P     P    +  PA
Sbjct: 496 PPPWEELPPEFASPAPA 512

Length = 700

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 47/232 (20%), Positives = 60/232 (25%), Gaps = 35/232 (15%)

Query: 125  SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 184
            SAR  +P      P      S   P       P P+P+PA        P     P   PR
Sbjct: 2595 SARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPP-ERPR 2653

Query: 185  SAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVE 244
              P P    +P       A        AS   Q   R               A    V  
Sbjct: 2654 DDPAPGRVSRPRR-----ARRLGRAAQASSPPQRPRR--------------RAARPTVGS 2694

Query: 245  VTKAA--YDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGSS 302
            +T  A       +      +    T +  G A         P   +     A   T G  
Sbjct: 2695 LTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGP 2754

Query: 303  TAP-----------SASPPSPTATPPSTTTNPP--PQSPGGGTAPPPPNSSA 341
              P            A P +P A PP   T P     S    + P P + + 
Sbjct: 2755 ARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPAD 2806

Length = 3151

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 20/72 (27%), Positives = 23/72 (31%), Gaps = 3/72 (4%)

Query: 129 SSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAP---APAPEPATTPTPAPASAPTPTPRS 185
            S     S+PA       PSP PAP +   P     A  P P       P   P      
Sbjct: 365 ISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEP 424

Query: 186 APTPAPTRQPAT 197
           +PTP      A 
Sbjct: 425 SPTPPANAANAP 436

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 13/75 (17%), Positives = 19/75 (25%)

Query: 121 AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPT 180
                       P P+   P P  +  +P P P   P  A   +           +  P 
Sbjct: 520 TAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPP 579

Query: 181 PTPRSAPTPAPTRQP 195
                 P+P     P
Sbjct: 580 IPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 32/152 (21%), Positives = 46/152 (30%), Gaps = 9/152 (5%)

Query: 130 SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTP 189
              P P +P P      P P P P +     PA   +   TPT +PA+ P  T      P
Sbjct: 48  PWDPSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATF---ALP 104

Query: 190 APTRQPATHVVGGALGWTVPP---NASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVT 246
           A    P      G L     P     +       +         L   Y A     +   
Sbjct: 105 AGPAGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQ 164

Query: 247 KAAYDSCNSSSTISKSTNPPT--RITLGTAGE 276
           + +    N  S + +  N  T  + T G   +
Sbjct: 165 QQSAQK-NDESQLQQQPNGETPPQQTDGAGDD 195

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|177328 PHA01929, PHA01929, putative scaffolding protein

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 19/76 (25%), Positives = 22/76 (28%)

Query: 126 ARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRS 185
           A   +P P P      P        P     PT  P P P  A TP     +   P P +
Sbjct: 22  AAAPTPQPNPVIQPQAPVQPGQPGAPQQLAIPTQQPQPVPTSAMTPHVVQQAPAQPAPAA 81

Query: 186 APTPAPTRQPATHVVG 201
            P        A  V  
Sbjct: 82  PPAAGAALPEALEVPP 97

Length = 306

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 23/130 (17%), Positives = 37/130 (28%), Gaps = 5/130 (3%)

Query: 84  SPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSARGSSPAPQPSSPAPQPS 143
           +P +R   +  +  + A      +    G  L  +  A   + R  +P   P+ PA    
Sbjct: 382 APGARAAAAVGASAVPAVTA---VTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADR 438

Query: 144 GSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPT--PRSAPTPAPTRQPATHVVG 201
           G   +   AP      A A A          P +       P S   P    +PA     
Sbjct: 439 GDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAA 498

Query: 202 GALGWTVPPN 211
            +        
Sbjct: 499 PSAATPAAVP 508

Length = 830

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 20/96 (20%), Positives = 27/96 (28%)

Query: 115 LGGQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPA 174
           +G    A       +  +  P   A +P+       PA       A APA   A      
Sbjct: 588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGV 647

Query: 175 PASAPTPTPRSAPTPAPTRQPATHVVGGALGWTVPP 210
            A    P   + P  +          GGA     PP
Sbjct: 648 AAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPP 683

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 21/86 (24%), Positives = 25/86 (29%)

Query: 125 SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 184
            A   +       PA     +  +P PAPA     APA A      P PA          
Sbjct: 657 VAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADD 716

Query: 185 SAPTPAPTRQPATHVVGGALGWTVPP 210
            A  P    Q A+     A      P
Sbjct: 717 PAAQPPQAAQGASAPSPAADDPVPLP 742

Length = 824

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 17/69 (24%), Positives = 23/69 (33%)

Query: 128 GSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAP 187
           G++ A +    A           P     P PAP   P+P     P P   P     + P
Sbjct: 70  GAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPP 129

Query: 188 TPAPTRQPA 196
            P P  +P 
Sbjct: 130 APKPEPKPV 138

Length = 226

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 24/61 (39%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 131 PAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPA 190
           P   P    P  + S    VP P  T TPA  PAP       PAPA+AP P+    P  A
Sbjct: 84  PPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAP---AAAVPAPAAAPPPSDPPQPPRA 140

Query: 191 P 191
           P
Sbjct: 141 P 141

Length = 141

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 42.0 bits (98), Expect = 4e-04
 Identities = 26/83 (31%), Positives = 28/83 (33%)

Query: 130 SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTP 189
           +P P     AP      P+     AR P  AP  A  PA  P  A   A  P     P  
Sbjct: 700 APTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAA 759

Query: 190 APTRQPATHVVGGALGWTVPPNA 212
           AP R        GA     PP A
Sbjct: 760 APGRARPPAAAPGAPTPQPPPQA 782

Length = 991

>gnl|CDD|237015 PRK11901, PRK11901, hypothetical protein; Reviewed

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 14/64 (21%), Positives = 17/64 (26%), Gaps = 1/64 (1%)

Query: 134 QPSSPAPQPSGSTPSPVPAPARTPTPAPAPA-PEPATTPTPAPASAPTPTPRSAPTPAPT 192
            P++PA                 PTP   PA  +PA         A  P     P     
Sbjct: 174 LPTAPATVAPSKGAKVPATAETHPTPPQKPATKKPAVNHHKTATVAVPPATSGKPKSGAA 233

Query: 193 RQPA 196
              A
Sbjct: 234 SARA 237

Length = 327

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 19/87 (21%), Positives = 22/87 (25%)

Query: 124 VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 183
                   A       P  +G      P PA  P    APA      P PAPA+ P    
Sbjct: 654 PKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQ 713

Query: 184 RSAPTPAPTRQPATHVVGGALGWTVPP 210
              P   P +                P
Sbjct: 714 ADDPAAQPPQAAQGASAPSPAADDPVP 740

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 4/100 (4%)

Query: 124 VSARGSSPAPQPSSPAP----QPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAP 179
            +A  ++PAP    P P     P  ++P+P    A          P+PAT          
Sbjct: 482 RAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETL 541

Query: 180 TPTPRSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNW 219
            P P +AP P         V       +      +   +W
Sbjct: 542 APAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDW 581

Length = 700

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 22/76 (28%), Positives = 28/76 (36%), Gaps = 4/76 (5%)

Query: 124 VSARGSSPAPQPS--SPAPQPSGSTPS-PVPAPARTPTPAPAPAPEPATTPTPAPASAPT 180
            S   SS A QPS    A QP+G+ P+  V  PA  P   P      A  P         
Sbjct: 400 PSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVN-PPSTAPQAVRPAQFKEEKKI 458

Query: 181 PTPRSAPTPAPTRQPA 196
           P  + +     T +P 
Sbjct: 459 PVSKVSSLGPSTLRPI 474

Length = 614

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 19/76 (25%), Positives = 27/76 (35%)

Query: 116  GGQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAP 175
             G    +   A  S    + S P+P      P+ V APA    PA +PA       +  P
Sbjct: 2777 AGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQP 2836

Query: 176  ASAPTPTPRSAPTPAP 191
             + P P     P+   
Sbjct: 2837 TAPPPPPGPPPPSLPL 2852

Length = 3151

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 3/62 (4%)

Query: 146 TPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR---SAPTPAPTRQPATHVVGG 202
             +   A A        P    A  PTP P +A  PTP      P PAP  +P    V  
Sbjct: 125 PAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVAR 184

Query: 203 AL 204
           A 
Sbjct: 185 AD 186

Length = 418

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 22/93 (23%), Positives = 33/93 (35%), Gaps = 4/93 (4%)

Query: 125 SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 184
            A  ++PAP  ++     +    +PVPA A     A +   E    P     SA  P   
Sbjct: 424 EAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASD 483

Query: 185 SAPT----PAPTRQPATHVVGGALGWTVPPNAS 213
           + P     PAP     +     A+     P A+
Sbjct: 484 APPDAAFEPAPRAAAPSAATPAAVPDARAPAAA 516

Length = 830

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 35/223 (15%), Positives = 61/223 (27%), Gaps = 8/223 (3%)

Query: 126 ARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRS 185
           A G++ AP+ ++ A       P   PAP  T       A   A  P  A A A   +   
Sbjct: 405 AAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCD 464

Query: 186 APTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEV 245
                P     +     +     PP+A+      A   + +    +            + 
Sbjct: 465 ERDAQPPADSGSASAPAS---DAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDA 521

Query: 246 TKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGSSTAP 305
             AA      +   + +   P     G A             S+ +          + AP
Sbjct: 522 PAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAP 581

Query: 306 SASPPSPTATPPSTTTNP-----PPQSPGGGTAPPPPNSSAKS 343
           +A+P             P        +P  G A     + ++ 
Sbjct: 582 AAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRG 624

Length = 830

>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 141 QPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPAT 197
             +GSTP+  PAPA     A +PA   AT P PA A A       AP  A T+ PA 
Sbjct: 190 SVAGSTPATAPAPASAQPAAQSPA---ATQPEPAAAPAAAKAQAPAPQQAGTQNPAK 243

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 123 NVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPT 182
                 ++P+ QP+ PAP  +   P+  PAPA    PAPA AP     P     +    T
Sbjct: 454 PSPPPAAAPSAQPA-PAPAAAPE-PTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAAT 511

Query: 183 PRSA 186
            R  
Sbjct: 512 LRER 515

Length = 824

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 2/86 (2%)

Query: 129 SSPAPQPSSPAPQPSG-STPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAP 187
           S+     ++PAP     +TP+    PA    PAPA  P+      P+ A+  T     AP
Sbjct: 167 STTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAAT-PAP 225

Query: 188 TPAPTRQPATHVVGGALGWTVPPNAS 213
               T   A  +     G + P    
Sbjct: 226 AAPATPDGAAPLPTDQAGVSTPAADP 251

Length = 331

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 131 PAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEP---ATTPTPAPASAPTPTPRSAP 187
           P+   S  A   + + P+P P P+  P P    AP+    ATTP+P PA A  P P  A 
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 188 TPAPTRQPAT 197
              P+  P  
Sbjct: 421 PTEPSPTPPA 430

Length = 620

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 41.3 bits (98), Expect = 6e-04
 Identities = 16/61 (26%), Positives = 22/61 (36%)

Query: 117 GQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPA 176
           G  L +   A  +  A    + A   + +  +P PAPA    PA A     A       A
Sbjct: 186 GSLLVVIEVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHA 245

Query: 177 S 177
           S
Sbjct: 246 S 246

Length = 547

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 41.3 bits (98), Expect = 6e-04
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 137 SPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAP-TPA 190
             A  P+ +      APA     APAPAP  A  P  A  +A     ++   +PA
Sbjct: 194 VAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPA 248

Length = 547

>gnl|CDD|235665 PRK05996, motB, flagellar motor protein MotB; Validated

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 17/76 (22%), Positives = 20/76 (26%), Gaps = 9/76 (11%)

Query: 132 APQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASA---------PTPT 182
              P   A + +    S   APA  P  AP P  +P    T     A         P   
Sbjct: 197 DLLPPGQAREQAQGAKSATAAPATVPQAAPLPQAQPKKAATEEELIADAKKAATGEPAAN 256

Query: 183 PRSAPTPAPTRQPATH 198
              A  P P       
Sbjct: 257 AAKAAKPEPMPDDQQK 272

Length = 423

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 22/105 (20%), Positives = 30/105 (28%)

Query: 109 SFPGHCLGGQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPA 168
              G            +AR ++PA   +  AP P+G+  +P  A A       AP   P 
Sbjct: 596 GGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPK 655

Query: 169 TTPTPAPASAPTPTPRSAPTPAPTRQPATHVVGGALGWTVPPNAS 213
               P  +      P  A   AP   P                A 
Sbjct: 656 HVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQ 700

Length = 824

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.5 bits (97), Expect = 7e-04
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 2/92 (2%)

Query: 125  SARGSSPAP--QPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPT 182
            +AR +SPA    P+ PA     +TP     PAR PT A  PAP P   P   P    T  
Sbjct: 2727 AARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRP 2786

Query: 183  PRSAPTPAPTRQPATHVVGGALGWTVPPNASV 214
              ++ + +    P+           + P A++
Sbjct: 2787 AVASLSESRESLPSPWDPADPPAAVLAPAAAL 2818

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.5 bits (97), Expect = 7e-04
 Identities = 46/231 (19%), Positives = 63/231 (27%), Gaps = 38/231 (16%)

Query: 124  VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPA-PAPAPEPATTPTPAPASAPTPT 182
            VSA    P P  +  A     + P+P   PA   TP  PA    P TT  P PA AP   
Sbjct: 2716 VSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGP-PAPAPPAA 2774

Query: 183  PRSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDV 242
            P + P    TR     +         P + +                           D 
Sbjct: 2775 PAAGPPRRLTRPAVASLSESRESLPSPWDPA---------------------------DP 2807

Query: 243  VEVTKAAYDSCNSSSTISKSTNPPTRIT----LGTAGEHYFFCTFPGHCSAGQKLAVNVT 298
                 A   +   +++ +    PPT           G         G  + G  +     
Sbjct: 2808 PAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPP 2867

Query: 299  GGSSTAPSASPPSPTAT-----PPSTTTNPPPQSPGGGTAPPPPNSSAKSL 344
              S  A  A+P  P          S +T      P     PP P +     
Sbjct: 2868 SRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQ 2918

Length = 3151

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.0 bits (96), Expect = 8e-04
 Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 4/96 (4%)

Query: 121 AINVSARGSSPAPQPSSPAPQPSGS-TPSPVPAPARTPTPAPA--PAPEPATTPTPAPAS 177
           A  V A  +      ++ AP+ + +   +   AP   P P        + A    P PA 
Sbjct: 393 ASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAK 452

Query: 178 APTPTPRSAPTPAPTRQPATHVVGGALGW-TVPPNA 212
           A       +       QP       +      PP+A
Sbjct: 453 ANARASADSRCDERDAQPPADSGSASAPASDAPPDA 488

Length = 830

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.1 bits (97), Expect = 9e-04
 Identities = 20/69 (28%), Positives = 26/69 (37%)

Query: 121 AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPT 180
               +  G +P+P P++         P+  P P   P PAP  AP PA  P    A A  
Sbjct: 444 PAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAP 503

Query: 181 PTPRSAPTP 189
                A T 
Sbjct: 504 AGADDAATL 512

Length = 824

>gnl|CDD|113398 pfam04625, DEC-1_N, DEC-1 protein, N-terminal region

 Score = 40.6 bits (94), Expect = 9e-04
 Identities = 22/55 (40%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 142 PSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPA 196
              S P  + A A  P PAPAPA  P   P PA  +   P P  A  PA   Q A
Sbjct: 95  AMPSMPGLLGAAAPVPAPAPAPAAAPPAAPAPAADTPAAPIP-DAVQPAILGQAA 148

The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). Length = 407

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 23/96 (23%), Positives = 27/96 (28%)

Query: 125 SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 184
            A G    P P+S  P    + P+   APA    PAPA A       + APA        
Sbjct: 593 GAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEH 652

Query: 185 SAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWA 220
                A            A      P A       A
Sbjct: 653 HPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPA 688

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 128 GSSPAPQPSSP--APQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRS 185
           G+ PA   ++P   P P+ + P+        P  APA AP  A     A A+AP     +
Sbjct: 371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAA-AAARAVAAAPARRSPA 429

Query: 186 APTPAPTRQPATHVVGGALGWTVPPNAS 213
               A  RQ +    GGA      P A+
Sbjct: 430 PEALAAARQASARGPGGAPAPAPAPAAA 457

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 23/92 (25%), Positives = 28/92 (30%), Gaps = 3/92 (3%)

Query: 126 ARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPT---PAPASAPTPT 182
           A      P P++ AP  +   P+  PA       A A A   A  P    PAP +     
Sbjct: 378 AAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAAR 437

Query: 183 PRSAPTPAPTRQPATHVVGGALGWTVPPNASV 214
             SA  P     PA            P  A  
Sbjct: 438 QASARGPGGAPAPAPAPAAAPAAAARPAAAGP 469

Length = 700

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 146 TPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPT-PRSAPTPAPTRQPAT 197
            P P P PA+    AP+P       PTPAP++ P      + P   P R+ AT
Sbjct: 361 VPVPAPQPAKPTAAAPSPV-----RPTPAPSTRPKAAAAANIPPKEPVRETAT 408

Length = 585

>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional

 Score = 40.5 bits (94), Expect = 0.001
 Identities = 26/73 (35%), Positives = 28/73 (38%), Gaps = 8/73 (10%)

Query: 130 SPAPQPS---SPAPQP---SGSTPSPVPAP--ARTPTPAPAPAPEPATTPTPAPASAPTP 181
           +P P  S    PAP P   +   P P  AP  A  P P  A A   A     APA A T 
Sbjct: 73  APTPAASEKFDPAPAPHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTS 132

Query: 182 TPRSAPTPAPTRQ 194
                P PA   Q
Sbjct: 133 AASKKPDPAAHTQ 145

Length = 566

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 19/54 (35%), Positives = 20/54 (37%)

Query: 143 SGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPA 196
            G+   P  A       APA  P  A  P P  A A     R AP PAP    A
Sbjct: 379 RGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAA 432

Length = 576

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 130 SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAP-ASAPTPTPRSAPT 188
                P + AP  + +  +    P +    AP P P  A+ PTP   A  P P P + P 
Sbjct: 119 DTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPP 178

Query: 189 PAPT 192
           P P 
Sbjct: 179 PTPV 182

Length = 418

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 20/69 (28%), Positives = 32/69 (46%)

Query: 125 SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 184
           S   SS +   SS + + +  +P P P+ + +P+  P PA   +    P P+ AP+    
Sbjct: 321 SRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAA 380

Query: 185 SAPTPAPTR 193
           SA  P   R
Sbjct: 381 SAGRPTRRR 389

Length = 1352

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 25/69 (36%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 132 APQPSS-----PAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSA 186
             QP S     PA         P P P   P P P P PEP   P  AP   P P P+  
Sbjct: 44  PAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEP---PKEAPVVIPKPEPKPK 100

Query: 187 PTPAPTRQP 195
           P P P  +P
Sbjct: 101 PKPKPKPKP 109

Length = 246

>gnl|CDD|234994 PRK01973, PRK01973, septum formation inhibitor; Reviewed

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 15/59 (25%), Positives = 19/59 (32%), Gaps = 4/59 (6%)

Query: 126 ARGSSPAPQPSSPAPQPSGSTPS----PVPAPARTPTPAPAPAPEPATTPTPAPASAPT 180
            R +  A      A   + +          A A  P  A AP P PA  P    A + T
Sbjct: 105 DRRAPAAKAADEAAAAAAEAAAPAAAAAAEAAAAAPAAAAAPEPPPAPAPEAVAAQSQT 163

Length = 271

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 18/57 (31%), Positives = 20/57 (35%)

Query: 141 QPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPAT 197
             +  T  P PA A T    P P P  A   +P P  AP   P      AP     T
Sbjct: 52  DVTVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPEAPAENTVT 108

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase; Validated

 Score = 40.2 bits (95), Expect = 0.001
 Identities = 21/106 (19%), Positives = 32/106 (30%), Gaps = 26/106 (24%)

Query: 117 GQKLA-INVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAP---------E 166
           GQ L  I+  A   + A   ++ A   +    +   A A     A +PA          +
Sbjct: 70  GQVLGRIDEGAAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAARKLAAENGLD 129

Query: 167 PATTPT----------------PAPASAPTPTPRSAPTPAPTRQPA 196
            +                     A A+AP     +AP  AP    A
Sbjct: 130 ASAVKGTGKGGRVTKEDVLAALAAAAAAPAAPAAAAPAAAPAPLGA 175

Length = 407

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 8/65 (12%)

Query: 128 GSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAP 187
           G S +   ++PA            A A  P  A A A + A     APA+          
Sbjct: 81  GESASDAGAAPAAAA--------EAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPD 132

Query: 188 TPAPT 192
            PA T
Sbjct: 133 IPAGT 137

Length = 464

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 124 VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPT-PAPASAPTPT 182
            S  G++PA    + A  P+ +  +     A  P    APA E A  P  PA     T T
Sbjct: 84  ASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIPAGTEMVTMT 143

Query: 183 PRSA 186
            R A
Sbjct: 144 VREA 147

Length = 464

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 12/54 (22%), Positives = 18/54 (33%)

Query: 125 SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASA 178
           +   ++    P  PA   + +     P  A       A A E   TP    A+A
Sbjct: 73  APPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPLRGAAAA 126

Length = 1228

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 25/81 (30%), Positives = 30/81 (37%), Gaps = 1/81 (1%)

Query: 141 QPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPATHVV 200
             +G   +P  A       APA AP PA    PA A+AP P     P PAP   PA    
Sbjct: 386 GVAGGAGAPAAAAPSAAAAAPAAAPAPAA-AAPAAAAAPAPAAAPQPAPAPAPAPAPPSP 444

Query: 201 GGALGWTVPPNASVGYQNWAR 221
            G       P+        A+
Sbjct: 445 AGNAPAGGAPSPPPAAAPSAQ 465

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 16/73 (21%), Positives = 22/73 (30%)

Query: 124 VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 183
            + +   PA QP   A   S  +P+        P P   P P  A    P P +      
Sbjct: 710 PAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAA 769

Query: 184 RSAPTPAPTRQPA 196
            +A  P       
Sbjct: 770 PAAAPPPSPPSEE 782

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 23/93 (24%), Positives = 31/93 (33%), Gaps = 4/93 (4%)

Query: 125 SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASA----PT 180
            A  +  AP  ++PA        +P    A  P   P  A + A+ P+PA        P 
Sbjct: 685 PAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPE 744

Query: 181 PTPRSAPTPAPTRQPATHVVGGALGWTVPPNAS 213
           P     P  AP + P       A      P  S
Sbjct: 745 PDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPS 777

Length = 824

>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional

 Score = 40.1 bits (93), Expect = 0.002
 Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 6/74 (8%)

Query: 125 SARGSSPAPQP---SSPAPQPSG---STPSPVPAPARTPTPAPAPAPEPATTPTPAPASA 178
           ++    PAP P   +S AP P+       +P P  A   T A      PA   T A +  
Sbjct: 78  ASEKFDPAPAPHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKK 137

Query: 179 PTPTPRSAPTPAPT 192
           P P   +  +P P 
Sbjct: 138 PDPAAHTQHSPPPF 151

Length = 566

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 123 NVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPA---PASAP 179
             +   + P PQ S P P P+   P P         P P P    A++  PA     S+P
Sbjct: 517 ASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSP 576

Query: 180 TPTPRSAPTPAPTR 193
            P     PTP+PT+
Sbjct: 577 PPPIPEEPTPSPTK 590

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 17/73 (23%), Positives = 24/73 (32%)

Query: 125 SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 184
           SA  S  A   +   P P+ +   P      +       A  P+  P  A    P P   
Sbjct: 362 SAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEP 421

Query: 185 SAPTPAPTRQPAT 197
           + P+P P    A 
Sbjct: 422 TEPSPTPPANAAN 434

Length = 620

>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 131 PAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTP 181
            A Q   P P P    P+P    A TP    APAP PA+       +AP P
Sbjct: 46  SAVQEQVPTPAP---APAPAVPSAPTPVAPAAPAPAPASA-GENVVTAPMP 92

Length = 153

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 45/229 (19%), Positives = 77/229 (33%), Gaps = 14/229 (6%)

Query: 125 SARGSSPAPQPSSPAPQ-PSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 183
           ++  +  +   SS     P  S      AP+  P   P   P  A +P P   S+P    
Sbjct: 157 ASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISAS 216

Query: 184 RSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVV 243
            S+P PAP R  A      +   +   ++  G   W   N   +        P R+ +  
Sbjct: 217 ASSPAPAPGRSAADDAGASSSDSSSSESSGCG---WGPENECPLPRPAPITLPTRIWEAS 273

Query: 244 EVTKAAYD--SCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGS 301
                +      +SSS+  + +  P+  + G+              ++    +   +  S
Sbjct: 274 GWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGP------APSSPRASSSSSSSRESSSS 327

Query: 302 STAPSASPPSPTATP--PSTTTNPPPQSPGGGTAPPPPNSSAKSLGAAS 348
           ST+ S+      A    PS + +P P  P     P  P    +   A S
Sbjct: 328 STSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPS 376

Length = 1352

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 17/65 (26%), Positives = 23/65 (35%)

Query: 129 SSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPT 188
           SS +    S         PSP  +P+ +  P PA    P   P P+ A +        PT
Sbjct: 327 SSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPT 386

Query: 189 PAPTR 193
               R
Sbjct: 387 RRRAR 391

Length = 1352

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 40.1 bits (93), Expect = 0.002
 Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 125 SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEP-ATTPTPAPASAPTPTP 183
           +A G +  P  +    +P  + P     PA  P  A  PA  P A TP P P + P P  
Sbjct: 729 AAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQ 788

Query: 184 RSAPTPAPTRQP 195
           R    P P   P
Sbjct: 789 RPRGAPTPQPPP 800

Length = 991

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 15/54 (27%), Positives = 17/54 (31%)

Query: 140 PQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTR 193
                + P P  A      P P PA   A +P P  A A  P       PA   
Sbjct: 53  VTVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPEAPAENT 106

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|234178 TIGR03354, VI_FHA, type VI secretion system FHA domain protein

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 20/64 (31%), Positives = 21/64 (32%), Gaps = 2/64 (3%)

Query: 134 QPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTR 193
           +P S A     S P   P  AR P  A     EP   P   P   P P P  AP      
Sbjct: 147 EPLSAADLDDLSAPLFPPLDARLPAFAAPIDAEPTMVPPFVPL--PAPEPAPAPASQAPS 204

Query: 194 QPAT 197
             A 
Sbjct: 205 SDAV 208

Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 396

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 17/64 (26%), Positives = 20/64 (31%), Gaps = 7/64 (10%)

Query: 152 APARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPATHVV-------GGAL 204
           A A       APAP   T    + +    P   +A    P   PAT          G A 
Sbjct: 266 ADAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRGRGSAA 325

Query: 205 GWTV 208
            W V
Sbjct: 326 LWFV 329

Length = 656

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 132 APQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 184
           A   + PA      +       +++ T  PA A      P   PA+ P P  R
Sbjct: 266 ADAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPAR 318

Length = 656

>gnl|CDD|218658 pfam05616, Neisseria_TspB, Neisseria meningitidis TspB protein

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 128 GSSPAPQPSSPAPQPSGST-PSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSA 186
           GS+ AP+ + P P+ S +  P+  P P   P   P P P+P   P   P +   P  R  
Sbjct: 322 GSAEAPE-AQPLPEVSPAENPANNPNPRENPGTRPNPEPDPDLNPDANPDTDGQPGTRPD 380

Query: 187 PTPAPTRQPATH 198
               P R    H
Sbjct: 381 SPAVPDRPNGRH 392

This family consists of several Neisseria meningitidis TspB virulence factor proteins. Length = 502

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 39.7 bits (92), Expect = 0.002
 Identities = 12/56 (21%), Positives = 16/56 (28%)

Query: 130 SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRS 185
           +  P   +PA QP+   P+  P       P           P   P        RS
Sbjct: 204 TQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGHKRS 259

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF; Provisional

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 33/211 (15%), Positives = 57/211 (27%), Gaps = 12/211 (5%)

Query: 121 AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASA-- 178
           A+  +   +       +PAPQ      +PV AP +    A     +   +      +A  
Sbjct: 54  ALETARSDTPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIAAMA 113

Query: 179 ---PTPTPRSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDY 235
              P   PR AP  AP R  +           +   A+V       +   +V + L  D+
Sbjct: 114 LRQPVSVPRQAPAAAPVRAASIPSPAAQ---ALAHAAAVRTAPRQEHALSAVPEQLFADF 170

Query: 236 PARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAV 295
                 V      A      +   + +             +                L  
Sbjct: 171 LTTA-PVPRAPVQAPVVAAPAPVPAIAAALAAHA---AYAQDDDEQLDDDGFDLDDALPQ 226

Query: 296 NVTGGSSTAPSASPPSPTATPPSTTTNPPPQ 326
            +   +      +P +P A        P PQ
Sbjct: 227 ILPPAALPPIVVAPAAPAALAAVAAAAPAPQ 257

Length = 559

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 19/78 (24%), Positives = 24/78 (30%)

Query: 138 PAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPAT 197
           PAP  +G    P PA +  P  A  PA   A     APA A      +  + AP    A 
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAA 649

Query: 198 HVVGGALGWTVPPNASVG 215
                        +    
Sbjct: 650 PEHHPKHVAVPDASDGGD 667

Length = 824

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 23/82 (28%), Positives = 28/82 (34%), Gaps = 2/82 (2%)

Query: 116 GGQKLAINVSARGSSPAPQPSS-PAPQP-SGSTPSPVPAPARTPTPAPAPAPEPATTPTP 173
           G  +         S P P P+  PA  P   +TP P   P     PAP P  +P    T 
Sbjct: 401 GDDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATE 460

Query: 174 APASAPTPTPRSAPTPAPTRQP 195
                P    R A      R+P
Sbjct: 461 PAPDDPDDATRKALDALRERRP 482

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 54/218 (24%), Positives = 66/218 (30%), Gaps = 36/218 (16%)

Query: 126  ARGSSPAPQPSSPA-PQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTP---APASAPTP 181
            A+ SSP  +P   A     GS  S    P   PTP PAP    + TP P   A A   +P
Sbjct: 2674 AQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASP 2733

Query: 182  TPRSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHD 241
               +AP P     PA     G       P  + G    A     + G       P R   
Sbjct: 2734 ALPAAPAPPAV--PAGPATPGGPARPARPPTTAGPPAPAPPAAPAAG-------PPRRLT 2784

Query: 242  VVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGS 301
               V   + +S  S  +     +PP  +    A                          S
Sbjct: 2785 RPAVASLS-ESRESLPSPWDPADPPAAVLAPAAALP--------------------PAAS 2823

Query: 302  STAPSASPPSPTATPPSTTTNPPPQS--PGGGTAPPPP 337
               P   P S   T P     PPP S   GG  AP   
Sbjct: 2824 PAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGD 2861

Length = 3151

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 12/59 (20%), Positives = 16/59 (27%)

Query: 130 SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPT 188
                P +P    +  T      P+  P  A  P P PA    P+P             
Sbjct: 381 PNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 13/37 (35%), Positives = 15/37 (40%)

Query: 160 APAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPA 196
           +      P   P PAPA    PTP +   PAP    A
Sbjct: 46  SAVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAPASA 82

Length = 153

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 1/53 (1%)

Query: 145 STPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPA-PTRQPA 196
           +       P+    PAP P  + A   T A A A        P    P R+  
Sbjct: 14  AEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERK 66

Length = 475

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 37.1 bits (86), Expect = 0.003
 Identities = 17/58 (29%), Positives = 20/58 (34%)

Query: 132 APQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTP 189
           AP      P+P     +  PAPA    P  +    P       PA A  P P   P P
Sbjct: 80  APLTPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPPQP 137

Length = 141

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 39.3 bits (91), Expect = 0.003
 Identities = 30/84 (35%), Positives = 34/84 (40%), Gaps = 8/84 (9%)

Query: 134 QPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPA--PASAPTPTPRSAPTPAP 191
           QP   AP P    P+  P  A+ P  A   A  PA  P  A  PA+AP      A  P  
Sbjct: 695 QPPPRAPTPM-RPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGR 753

Query: 192 TRQPATHVVGGALGWTVPPNASVG 215
            R PA      A G   PP A+ G
Sbjct: 754 ARPPA-----AAPGRARPPAAAPG 772

Length = 991

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 39.0 bits (92), Expect = 0.003
 Identities = 17/53 (32%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 148 SPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQP-ATHV 199
               APA    PA A     A    PAPA A    P +A   A      A H 
Sbjct: 194 VAAAAPAAAAAPAAAAPA-AAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHA 245

Length = 547

>gnl|CDD|221459 pfam12200, DUF3597, Domain of unknown function (DUF3597)

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 14/35 (40%), Positives = 17/35 (48%)

Query: 144 GSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASA 178
           G   +  PAPA  P  APA A   A   TP  A++
Sbjct: 11  GEAAAAAPAPAAAPATAPAAAAAAAPAATPPAAAS 45

This family of proteins is found in bacteria, eukaryotes and viruses. Proteins in this family are typically between 126 and 281 amino acids in length. The function of this domain is unknown. The structure of this domain has been found to contain five helices with a long flexible loop between helices one and two. Length = 124

>gnl|CDD|184281 PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB; Provisional

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 20/79 (25%), Positives = 25/79 (31%), Gaps = 5/79 (6%)

Query: 118 QKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPA-TTPTPAPA 176
             LA  V A        P +   +P    P+  P P   P P   P   P   +    P 
Sbjct: 114 AALAEQVKA----LGANPVTATGEPVPQMPASPPGPEGEPQPGNTPVSFPPQGSVAVPPP 169

Query: 177 SAPTPTPRSAPTPAPTRQP 195
           +A  P     P P  T Q 
Sbjct: 170 TAFYPGNGVTPPPQVTYQS 188

Length = 475

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 18/81 (22%), Positives = 23/81 (28%), Gaps = 1/81 (1%)

Query: 132 APQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAP 191
            P  ++PA        +P  A +R   PA  PAP          A       R+A   AP
Sbjct: 53  PPAAAAPAAAQPPPAAAP-AAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAP 111

Query: 192 TRQPATHVVGGALGWTVPPNA 212
             Q        A         
Sbjct: 112 EAQAPAAPAERAAAENAARRL 132

Length = 484

>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General function prediction only]

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 15/73 (20%), Positives = 23/73 (31%)

Query: 133 PQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPT 192
           P  +      S  + + +     +            TT +P+P    +PT  S  T   T
Sbjct: 780 PTKTETTLSYSAYSNTSILIETTSVVITKTVTQTQTTTSSPSPTQTTSPTQTSTSTTTTT 839

Query: 193 RQPATHVVGGALG 205
               T   GG  G
Sbjct: 840 SPSQTTTGGGICG 852

Length = 872

>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 134 QPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTR 193
           +  S +P P    P     P  TP  +P  +PE  T P+P    A  P  R+A   AP R
Sbjct: 3   RARSRSPSP----PRRPSPPRPTPPRSPDASPE-ETPPSPPGPGAEPPPGRAAGPAAPRR 57

Query: 194 QPATHVVGGALGWTVPPNASVGYQN 218
           +P     G     + PP   +G  +
Sbjct: 58  RPRGCPAGVTFSSSAPPRPPLGLDD 82

Length = 318

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 20/79 (25%), Positives = 22/79 (27%), Gaps = 12/79 (15%)

Query: 128 GSSPAPQPSSPAPQPSGSTP----------SPVPAPARTPTPAPAPAPEPATTPTPAPAS 177
           G    P     A Q   + P              AP+  P     P       P PAP  
Sbjct: 48  GDRDEPDMMPAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVE--PEPAPVE 105

Query: 178 APTPTPRSAPTPAPTRQPA 196
            P P P   P P P  Q  
Sbjct: 106 PPKPKPVEKPKPKPKPQQK 124

Length = 226

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.8 bits (90), Expect = 0.004
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 131 PAPQPSSPA----PQPSGSTPSPVPAPARTPTPAP-APAPEPATTPTPAPASAPTPTPRS 185
             PQP        P+  G+ P+ +P+PA  PTP    P    A  P    ASAP      
Sbjct: 398 DLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSAPLPPSPQASAPRNVASG 457

Query: 186 AP 187
            P
Sbjct: 458 KP 459

Length = 620

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.1 bits (91), Expect = 0.004
 Identities = 25/89 (28%), Positives = 31/89 (34%)

Query: 124 VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 183
            +  GS+ AP   +P        P      A TP   P      A +   APA+A  P P
Sbjct: 471 PADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAP 530

Query: 184 RSAPTPAPTRQPATHVVGGALGWTVPPNA 212
            + P       PA    G A    V  NA
Sbjct: 531 EARPPTPAAAAPAARAGGAAAALDVLRNA 559

Length = 830

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 15/80 (18%), Positives = 22/80 (27%), Gaps = 2/80 (2%)

Query: 116 GGQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPA--PAPAPEPATTPTP 173
           G      +      + A   +        + P      A  P     P  A EPA     
Sbjct: 439 GDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAA 498

Query: 174 APASAPTPTPRSAPTPAPTR 193
             A+ P   P +    A +R
Sbjct: 499 PSAATPAAVPDARAPAAASR 518

Length = 830

>gnl|CDD|218658 pfam05616, Neisseria_TspB, Neisseria meningitidis TspB protein

 Score = 38.8 bits (90), Expect = 0.004
 Identities = 17/65 (26%), Positives = 23/65 (35%)

Query: 131 PAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPA 190
           P P  +  + +   + P P  +PA  P   P P   P T P P P     P         
Sbjct: 315 PRPDLTPGSAEAPEAQPLPEVSPAENPANNPNPRENPGTRPNPEPDPDLNPDANPDTDGQ 374

Query: 191 PTRQP 195
           P  +P
Sbjct: 375 PGTRP 379

This family consists of several Neisseria meningitidis TspB virulence factor proteins. Length = 502

>gnl|CDD|237082 PRK12373, PRK12373, NADH dehydrogenase subunit E; Provisional

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 8/73 (10%)

Query: 133 PQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAP-------EPATTPTPAPASAPT-PTPR 184
           P+ +      +  TP+  P  A     AP   P       EPA       A+A   P   
Sbjct: 249 PKSADAETNAALKTPATAPKAAAKNAKAPEAQPVSGTAAAEPAPKEAAKAAAAAAKPALE 308

Query: 185 SAPTPAPTRQPAT 197
             P P    +P  
Sbjct: 309 DKPRPLGIARPGG 321

Length = 400

>gnl|CDD|235777 PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 37.1 bits (87), Expect = 0.004
 Identities = 12/40 (30%), Positives = 13/40 (32%)

Query: 139 APQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASA 178
           A  P         A      PA A A   A    PA A+A
Sbjct: 36  AAAPVAPVAQQAAAAPVAAAPAAAAAAAAAPAAAPAAAAA 75

Length = 155

>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP)

 Score = 36.9 bits (84), Expect = 0.004
 Identities = 16/79 (20%), Positives = 21/79 (26%)

Query: 117 GQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPA 176
           G+K     +   +   P       +           P         P PE      P P 
Sbjct: 44  GEKGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPE 103

Query: 177 SAPTPTPRSAPTPAPTRQP 195
             P P P   P P P  +P
Sbjct: 104 PEPEPEPEPEPEPEPEPEP 122

This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated. Length = 145

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 13/33 (39%), Positives = 15/33 (45%)

Query: 160 APAPAPEPATTPTPAPASAPTPTPRSAPTPAPT 192
           APA AP       PAPA+A    P +AP     
Sbjct: 284 APAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAE 316

Length = 633

>gnl|CDD|236555 PRK09537, pylS, pyrolysyl-tRNA synthetase; Reviewed

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 14/45 (31%), Positives = 17/45 (37%)

Query: 124 VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPA 168
              R   P   P     + SGS P P    +     APAPA  P+
Sbjct: 111 SVVRAPKPLENPVPAQAESSGSKPVPSIPVSTPEVKAPAPALTPS 155

Length = 417

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	362
PLN03148	167	Blue copper-like protein; Provisional	100.0
PLN03148	167	Blue copper-like protein; Provisional	100.0
PF02298	85	Cu_bind_like: Plastocyanin-like domain; InterPro:	99.95
PF02298	85	Cu_bind_like: Plastocyanin-like domain; InterPro:	99.94
PRK02710	119	plastocyanin; Provisional	98.55
COG3794	128	PetE Plastocyanin [Energy production and conversio	98.37
PF00127	99	Copper-bind: Copper binding proteins, plastocyanin	98.19
TIGR02656	99	cyanin_plasto plastocyanin. Members of this family	98.18
PF00127	99	Copper-bind: Copper binding proteins, plastocyanin	98.16
TIGR03102	115	halo_cynanin halocyanin domain. Halocyanins are bl	98.15
TIGR03102	115	halo_cynanin halocyanin domain. Halocyanins are bl	98.14
TIGR02656	99	cyanin_plasto plastocyanin. Members of this family	98.08
COG3794	128	PetE Plastocyanin [Energy production and conversio	98.04
PRK02710	119	plastocyanin; Provisional	97.94
TIGR02375	116	pseudoazurin pseudoazurin. Pseudoazurin, also call	97.93
TIGR02375	116	pseudoazurin pseudoazurin. Pseudoazurin, also call	97.86
TIGR03095	148	rusti_cyanin rusticyanin. Rusticyanin is a blue co	96.96
TIGR03095	148	rusti_cyanin rusticyanin. Rusticyanin is a blue co	96.94
TIGR02657	83	amicyanin amicyanin. Members of this family are am	96.87
TIGR02657	83	amicyanin amicyanin. Members of this family are am	96.82
PF06525	196	SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Memb	95.56
PF06525	196	SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Memb	95.36
KOG3858	233	consensus Ephrin, ligand for Eph receptor tyrosine	94.8
COG4454	158	Uncharacterized copper-binding protein [Inorganic	94.56
TIGR03096	135	nitroso_cyanin nitrosocyanin. Nitrosocyanin, as de	94.53
KOG3858	233	consensus Ephrin, ligand for Eph receptor tyrosine	94.22
PF13473	104	Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D	93.94
PF00812	145	Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a	93.12
TIGR03096	135	nitroso_cyanin nitrosocyanin. Nitrosocyanin, as de	92.58
COG4454	158	Uncharacterized copper-binding protein [Inorganic	92.33
TIGR03094	195	sulfo_cyanin sulfocyanin. Members of this family a	91.64
TIGR03094	195	sulfo_cyanin sulfocyanin. Members of this family a	90.09
PLN02604	566	oxidoreductase	89.43
TIGR02376	311	Cu_nitrite_red nitrite reductase, copper-containin	89.16
PF13473	104	Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D	88.25
PF00812	145	Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a	88.15
TIGR02376	311	Cu_nitrite_red nitrite reductase, copper-containin	87.14
PF07732	117	Cu-oxidase_3: Multicopper oxidase; InterPro: IPR01	86.29
PLN02354	552	copper ion binding / oxidoreductase	85.9
TIGR02695	125	azurin azurin. Azurin is a blue copper-binding pro	85.16
PF10731	65	Anophelin: Thrombin inhibitor from mosquito; Inter	85.01
TIGR02695	125	azurin azurin. Azurin is a blue copper-binding pro	83.1
PRK02888	635	nitrous-oxide reductase; Validated	82.77
PRK02888	635	nitrous-oxide reductase; Validated	82.54
PF07174	297	FAP: Fibronectin-attachment protein (FAP); InterPr	80.1

>PLN03148 Blue copper-like protein; Provisional

Probab=100.00  E-value=2.5e-36  Score=267.00  Aligned_cols=102  Identities=34%  Similarity=0.653  Sum_probs=96.1

Q ss_pred             hccceEEEecCCCCCcCCCCCCCCCCccccCceeeeCCEEEEeecCCCccEEEeCccccCCCCCCCCCCcCCCCCcEEEE
Q 018026           19 STAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTL   98 (362)
Q Consensus        19 ~~a~~~~~VGg~~GW~~~~~~~~~y~~Wa~~~~f~vGD~L~F~~~~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l   98 (362)
                      .+++++|+|||+.||+.    ..+|+.|+++++|+|||+|+|+|+++.|+|+||++++|++|+..+++..+++|++.|+|
T Consensus        17 ~~~a~~~~VGd~~GW~~----~~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~~~tsG~d~v~L   92 (167)
T PLN03148         17 ATTATDHIVGANKGWNP----GINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNWTSGKDFIPL   92 (167)
T ss_pred             hccceEEEeCCCCCcCC----CCChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCcceecCCCcEEEe
Confidence            44569999999999984    35799999999999999999999999999999999999999999999999999999999


Q ss_pred             eeccceEEEcCCCCCCCCCCeeeEEee
Q 018026           99 TASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        99 ~~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      +++|+|||||+ .+||++||||+|+|.
T Consensus        93 ~~~G~~YFIcg-~ghC~~GmKl~I~V~  118 (167)
T PLN03148         93 NKAKRYYFICG-NGQCFNGMKVTILVH  118 (167)
T ss_pred             cCCccEEEEcC-CCccccCCEEEEEEc
Confidence            99999999999 599999999999996

>PLN03148 Blue copper-like protein; Provisional

Probab=100.00  E-value=4.4e-36  Score=265.45  Aligned_cols=103  Identities=32%  Similarity=0.662  Sum_probs=97.0

Q ss_pred             CCCceeeeeeccCCcccCCCCCCCccccccCCceecCCEEEEEeCCCCceEEEEcccccCCCCCCCCCccCCCCCceEEc
Q 018026          192 TRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITL  271 (362)
Q Consensus       192 ~a~~~~~~VG~~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~l  271 (362)
                      .+.+++|+|||+.||+.    ..+|++|+++++|+|||+|+|+|++++|+|+||++++|+.|+..+++..+++|++.|+|
T Consensus        17 ~~~a~~~~VGd~~GW~~----~~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~~~tsG~d~v~L   92 (167)
T PLN03148         17 ATTATDHIVGANKGWNP----GINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNWTSGKDFIPL   92 (167)
T ss_pred             hccceEEEeCCCCCcCC----CCChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCcceecCCCcEEEe
Confidence            45788999999999984    35799999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccEEEEcCCCCCCCCCCeEEEEeeC
Q 018026          272 GTAGEHYFFCTFPGHCSAGQKLAVNVTG  299 (362)
Q Consensus       272 ~~~G~~yFic~~~~HC~~GmKl~I~V~~  299 (362)
                      +++|++||||+ .+||++||||+|+|.+
T Consensus        93 ~~~G~~YFIcg-~ghC~~GmKl~I~V~~  119 (167)
T PLN03148         93 NKAKRYYFICG-NGQCFNGMKVTILVHP  119 (167)
T ss_pred             cCCccEEEEcC-CCccccCCEEEEEEcC
Confidence            99999999999 6999999999999954

>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]

Probab=99.95  E-value=6e-29  Score=198.46  Aligned_cols=85  Identities=53%  Similarity=1.014  Sum_probs=70.1

Q ss_pred             cccCCCCCCCccccccCCceecCCEEEEEeCCCCceEEEEcccccCCCCCCCCCccCCCCCceEEcCCcccEEEEcCCCC
Q 018026          206 WTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPG  285 (362)
Q Consensus       206 W~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~  285 (362)
                      |+++.+. .+|++||++++|+|||+|+|+|+++.|+|+||++++|+.|+..+++..+.+|++.|+|+++|.+||||++++
T Consensus         1 W~~~~~~-~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~YFic~~~~   79 (85)
T PF02298_consen    1 WTIPTNA-SNYTDWASGKTFRVGDTLVFNYDSGQHSVVEVSKADYDSCNSSNPISTYSTGNDTVTLTKPGPHYFICGVPG   79 (85)
T ss_dssp             SSSSSST-THHHHHHCTS-BETTEEEEEE--TTTB-EEEESHHHHHHT--STTSEEE-SSEEEEEE-SSEEEEEE--STT
T ss_pred             CccCCCc-cchhHhhcCCcEeCCCEEEEEecCCCCeEEecChhhCccCCCCCceecccCCCEEEEeCCCcCeEEEeCCCC
Confidence            7776543 689999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q 018026          286 HCSAGQ  291 (362)
Q Consensus       286 HC~~Gm  291 (362)
                      ||++||
T Consensus        80 HC~~Gq   85 (85)
T PF02298_consen   80 HCQKGQ   85 (85)
T ss_dssp             TTTTT-
T ss_pred             cccccC
Confidence            999999

The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.

>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]

Probab=99.94  E-value=1.2e-28  Score=196.76  Aligned_cols=85  Identities=48%  Similarity=1.097  Sum_probs=70.3

Q ss_pred             CcCCCCCCCCCCccccCceeeeCCEEEEeecCCCccEEEeCccccCCCCCCCCCCcCCCCCcEEEEeeccceEEEcCCCC
Q 018026           33 WIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPG  112 (362)
Q Consensus        33 W~~~~~~~~~y~~Wa~~~~f~vGD~L~F~~~~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l~~~G~~yFic~~~~  112 (362)
                      |+++.+. .+|+.||++++|+|||+|+|+|.++.|+|+||++++|++|+..+++..+.+|++.|+|+++|.+||||++++
T Consensus         1 W~~~~~~-~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~YFic~~~~   79 (85)
T PF02298_consen    1 WTIPTNA-SNYTDWASGKTFRVGDTLVFNYDSGQHSVVEVSKADYDSCNSSNPISTYSTGNDTVTLTKPGPHYFICGVPG   79 (85)
T ss_dssp             SSSSSST-THHHHHHCTS-BETTEEEEEE--TTTB-EEEESHHHHHHT--STTSEEE-SSEEEEEE-SSEEEEEE--STT
T ss_pred             CccCCCc-cchhHhhcCCcEeCCCEEEEEecCCCCeEEecChhhCccCCCCCceecccCCCEEEEeCCCcCeEEEeCCCC
Confidence            8886543 799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q 018026          113 HCLGGQ  118 (362)
Q Consensus       113 HC~~Gm  118 (362)
                      ||++||
T Consensus        80 HC~~Gq   85 (85)
T PF02298_consen   80 HCQKGQ   85 (85)
T ss_dssp             TTTTT-
T ss_pred             cccccC
Confidence            999999

The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.

>PRK02710 plastocyanin; Provisional

Probab=98.55  E-value=8.1e-07  Score=75.15  Aligned_cols=72  Identities=18%  Similarity=0.221  Sum_probs=49.6

Q ss_pred             cCceeeeCCEEEEeec-CCCccEEEeCccccCCCCCCCCCCcCCCCCcEEEEeeccceEEEcCCCCCCCCCCeeeEEee
Q 018026           48 ANQTFTVGDTLVFNFA-AGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~-~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l~~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      +..++++||+|.|... ...|+++- +  +.+.....+ +....+....++++.+|.|.|+|.  .|=+.|||..|.|.
T Consensus        47 ~~i~v~~Gd~V~~~N~~~~~H~v~~-~--~~~~~~~~~-~~~~pg~t~~~tF~~~G~y~y~C~--~H~~~gM~G~I~V~  119 (119)
T PRK02710         47 STLTIKAGDTVKWVNNKLAPHNAVF-D--GAKELSHKD-LAFAPGESWEETFSEAGTYTYYCE--PHRGAGMVGKITVE  119 (119)
T ss_pred             CEEEEcCCCEEEEEECCCCCceEEe-c--CCccccccc-cccCCCCEEEEEecCCEEEEEEcC--CCccCCcEEEEEEC
Confidence            7889999999999653 46799863 1  111111111 111122236788999999999998  79889999999983

>COG3794 PetE Plastocyanin [Energy production and conversion]

Probab=98.37  E-value=2.9e-06  Score=72.67  Aligned_cols=73  Identities=26%  Similarity=0.269  Sum_probs=54.7

Q ss_pred             cCceeeeCCEEEEeecCC-CccEEEeCccccCCCCCCCCCCcCCCCCcEEEEeeccceEEEcCCCCCCCCCCeeeEEee
Q 018026           48 ANQTFTVGDTLVFNFAAG-NHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~~-~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l~~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      +..++++||+|.|.+... .|+|.-+...+.+   ....+....+-...++++.+|.|.|+|.-  |=..|||..|.|.
T Consensus        54 A~v~v~pGDTVtw~~~d~~~Hnv~~~~~~~~~---g~~~~~~~~~~s~~~Tfe~~G~Y~Y~C~P--H~~~gM~G~IvV~  127 (128)
T COG3794          54 AEVTVKPGDTVTWVNTDSVGHNVTAVGGMDPE---GSGTLKAGINESFTHTFETPGEYTYYCTP--HPGMGMKGKIVVG  127 (128)
T ss_pred             cEEEECCCCEEEEEECCCCCceEEEeCCCCcc---cccccccCCCcceEEEecccceEEEEecc--CCCCCcEEEEEeC
Confidence            788999999999999877 9999876444111   11222122223467899999999999986  8889999999986

>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]

Probab=98.19  E-value=4.9e-06  Score=67.91  Aligned_cols=76  Identities=26%  Similarity=0.315  Sum_probs=54.2

Q ss_pred             cCceeeeCCEEEEee-cCCCccEEEeCcc--ccCCCCCCCCC---CcCCCCC-cEEEEeeccceEEEcCCCCCCCCCCee
Q 018026           48 ANQTFTVGDTLVFNF-AAGNHDVTRVTQS--SFNACNTTSPL---SRTTNSP-ASVTLTASGPHYFICSFPGHCLGGQKL  120 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~-~~~~h~V~~V~~~--~y~~C~~~~~i---~~~~~G~-~~v~l~~~G~~yFic~~~~HC~~Gmk~  120 (362)
                      +..++++||+|.|.+ +...|+++.....  .-..+......   .....|. ..++++++|.|.|+|. + |...||+.
T Consensus        17 ~~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~y~C~-P-H~~~GM~G   94 (99)
T PF00127_consen   17 SEITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYEYYCT-P-HYEAGMVG   94 (99)
T ss_dssp             SEEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEEEEET-T-TGGTTSEE
T ss_pred             CEEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeCCCeEEEEEcC-C-CcccCCEE
Confidence            778999999999998 5779999886522  11112211111   1122232 5788899999999999 7 99999999


Q ss_pred             eEEee
Q 018026          121 AINVS  125 (362)
Q Consensus       121 ~I~V~  125 (362)
                      .|.|.
T Consensus        95 ~i~V~   99 (99)
T PF00127_consen   95 TIIVE   99 (99)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99984

The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....

>TIGR02656 cyanin_plasto plastocyanin

Probab=98.18  E-value=9.8e-06  Score=66.21  Aligned_cols=90  Identities=21%  Similarity=0.266  Sum_probs=57.7

Q ss_pred             eeeeeccCCcccCCCCCCCccccccCCceecCCEEEEEeC-CCCceEEEEcccccC------CCCCCCCCccCCCC-Cce
Q 018026          197 THVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYP-ARVHDVVEVTKAAYD------SCNSSSTISKSTNP-PTR  268 (362)
Q Consensus       197 ~~~VG~~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~-~~~hsV~~v~~~~y~------~C~~~~~~~~~~~G-~~~  268 (362)
                      ++.||.+.|       ...|..  +..++++||+|.|.-+ ...|+|+..+.. +.      .............| ...
T Consensus         2 ~v~~g~~~g-------~~~F~P--~~i~v~~G~~V~~~N~~~~~H~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pG~t~~   71 (99)
T TIGR02656         2 TVKMGADKG-------ALVFEP--AKISIAAGDTVEWVNNKGGPHNVVFDEDA-VPAGVKELAKSLSHKDLLNSPGESYE   71 (99)
T ss_pred             EEEEecCCC-------ceeEeC--CEEEECCCCEEEEEECCCCCceEEECCCC-CccchhhhcccccccccccCCCCEEE
Confidence            566775332       223555  7789999999999864 357999753221 10      00000000111222 356


Q ss_pred             EEcCCcccEEEEcCCCCCCCCCCeEEEEee
Q 018026          269 ITLGTAGEHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       269 v~l~~~G~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      ++++.+|.|.|+|.  +|++.||+..|.|.
T Consensus        72 ~tF~~~G~y~y~C~--~H~~aGM~G~I~V~   99 (99)
T TIGR02656        72 VTFSTPGTYTFYCE--PHRGAGMVGKITVE   99 (99)
T ss_pred             EEeCCCEEEEEEcC--CccccCCEEEEEEC
Confidence            88889999999999  89999999999984

Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.

>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]

Probab=98.16  E-value=3.7e-06  Score=68.65  Aligned_cols=79  Identities=20%  Similarity=0.297  Sum_probs=55.6

Q ss_pred             ccccccCCceecCCEEEEEe-CCCCceEEEEcccc--cCCCCCCCC---CccCCCC-CceEEcCCcccEEEEcCCCCCCC
Q 018026          216 YQNWARNNNFSVGDILVFDY-PARVHDVVEVTKAA--YDSCNSSST---ISKSTNP-PTRITLGTAGEHYFFCTFPGHCS  288 (362)
Q Consensus       216 Y~~Wa~~~~f~vGD~LvF~y-~~~~hsV~~v~~~~--y~~C~~~~~---~~~~~~G-~~~v~l~~~G~~yFic~~~~HC~  288 (362)
                      |+.  +..++++||+|.|.. +...|+|+......  -..+.....   ......| ...++++++|.|.|+|. + |.+
T Consensus        14 F~P--~~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~y~C~-P-H~~   89 (99)
T PF00127_consen   14 FDP--SEITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYEYYCT-P-HYE   89 (99)
T ss_dssp             EES--SEEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEEEEET-T-TGG
T ss_pred             EeC--CEEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeCCCeEEEEEcC-C-Ccc
Confidence            555  778999999999999 67789998875220  001111111   1112233 34678889999999999 7 999


Q ss_pred             CCCeEEEEee
Q 018026          289 AGQKLAVNVT  298 (362)
Q Consensus       289 ~GmKl~I~V~  298 (362)
                      .||+..|.|.
T Consensus        90 ~GM~G~i~V~   99 (99)
T PF00127_consen   90 AGMVGTIIVE   99 (99)
T ss_dssp             TTSEEEEEEE
T ss_pred             cCCEEEEEEC
Confidence            9999999984

The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....

>TIGR03102 halo_cynanin halocyanin domain

Probab=98.15  E-value=1.5e-05  Score=67.26  Aligned_cols=90  Identities=21%  Similarity=0.297  Sum_probs=62.5

Q ss_pred             CCceeeeeec--cC-CcccCCCCCCCccccccCCceecCCEEEEEeCC--CCceEEEEcccccCCCCCCCCCccCCCCCc
Q 018026          193 RQPATHVVGG--AL-GWTVPPNASVGYQNWARNNNFSVGDILVFDYPA--RVHDVVEVTKAAYDSCNSSSTISKSTNPPT  267 (362)
Q Consensus       193 a~~~~~~VG~--~~-GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~--~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~  267 (362)
                      +...++.||.  +. +..        |+.  ...++++||+|.|.++.  ..|+|.-.....|+.=    ....-.....
T Consensus        21 ~~~~~v~~G~~~~~g~~~--------F~P--~~ltV~~GdTVtw~~~~d~~~HnV~s~~~~~f~s~----~~~~~~G~t~   86 (115)
T TIGR03102        21 QDEVTVDVGAEANGGGFA--------FDP--PAIRVDPGTTVVWEWTGEGGGHNVVSDGDGDLDES----ERVSEEGTTY   86 (115)
T ss_pred             CceEEEEecccCCCCcee--------EeC--CEEEECCCCEEEEEECCCCCCEEEEECCCCCcccc----ccccCCCCEE
Confidence            3556788883  22 243        444  67899999999999854  5799974333345421    1111123357


Q ss_pred             eEEcCCcccEEEEcCCCCCCCCCCeEEEEee
Q 018026          268 RITLGTAGEHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       268 ~v~l~~~G~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      .++++++|.|-|+|.  -|=..|||..|.|.
T Consensus        87 s~Tf~~~G~Y~Y~C~--pH~~~gM~G~I~V~  115 (115)
T TIGR03102        87 EHTFEEPGIYLYVCV--PHEALGMKGAVVVE  115 (115)
T ss_pred             EEEecCCcEEEEEcc--CCCCCCCEEEEEEC
Confidence            899999999999999  58778999999983

Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.

>TIGR03102 halo_cynanin halocyanin domain

Probab=98.14  E-value=1.5e-05  Score=67.21  Aligned_cols=72  Identities=21%  Similarity=0.309  Sum_probs=52.2

Q ss_pred             cCceeeeCCEEEEeecC--CCccEEEeCccccCCCCCCCCCCcCCCCCcEEEEeeccceEEEcCCCCCCCCCCeeeEEee
Q 018026           48 ANQTFTVGDTLVFNFAA--GNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~--~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l~~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      ...++++||+|.|.++.  ..|+|.-.....|++    ............++|+++|.|-|+|..  |=..|||..|.|.
T Consensus        42 ~~ltV~~GdTVtw~~~~d~~~HnV~s~~~~~f~s----~~~~~~~G~t~s~Tf~~~G~Y~Y~C~p--H~~~gM~G~I~V~  115 (115)
T TIGR03102        42 PAIRVDPGTTVVWEWTGEGGGHNVVSDGDGDLDE----SERVSEEGTTYEHTFEEPGIYLYVCVP--HEALGMKGAVVVE  115 (115)
T ss_pred             CEEEECCCCEEEEEECCCCCCEEEEECCCCCccc----cccccCCCCEEEEEecCCcEEEEEccC--CCCCCCEEEEEEC
Confidence            67899999999999864  579997432233441    111111233478999999999999985  8677999999984

Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.

>TIGR02656 cyanin_plasto plastocyanin

Probab=98.08  E-value=1.9e-05  Score=64.45  Aligned_cols=75  Identities=24%  Similarity=0.306  Sum_probs=50.3

Q ss_pred             cCceeeeCCEEEEeec-CCCccEEEeCccccCC------CCCC-CCCCcCCCCCcEEEEeeccceEEEcCCCCCCCCCCe
Q 018026           48 ANQTFTVGDTLVFNFA-AGNHDVTRVTQSSFNA------CNTT-SPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQK  119 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~-~~~h~V~~V~~~~y~~------C~~~-~~i~~~~~G~~~v~l~~~G~~yFic~~~~HC~~Gmk  119 (362)
                      +..++++||+|.|... ...|+|+..+.. ...      .... +.+.........++++.+|.|.|+|.  +|++.||+
T Consensus        17 ~~i~v~~G~~V~~~N~~~~~H~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~~G~y~y~C~--~H~~aGM~   93 (99)
T TIGR02656        17 AKISIAAGDTVEWVNNKGGPHNVVFDEDA-VPAGVKELAKSLSHKDLLNSPGESYEVTFSTPGTYTFYCE--PHRGAGMV   93 (99)
T ss_pred             CEEEECCCCEEEEEECCCCCceEEECCCC-CccchhhhcccccccccccCCCCEEEEEeCCCEEEEEEcC--CccccCCE
Confidence            7889999999999854 357999753221 100      1000 00111112236788889999999998  89999999


Q ss_pred             eeEEee
Q 018026          120 LAINVS  125 (362)
Q Consensus       120 ~~I~V~  125 (362)
                      ..|.|.
T Consensus        94 G~I~V~   99 (99)
T TIGR02656        94 GKITVE   99 (99)
T ss_pred             EEEEEC
Confidence            999884

Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.

>COG3794 PetE Plastocyanin [Energy production and conversion]

Probab=98.04  E-value=3.2e-05  Score=66.29  Aligned_cols=73  Identities=25%  Similarity=0.304  Sum_probs=54.5

Q ss_pred             cCCceecCCEEEEEeCCC-CceEEEEcccccCCCCCCCCCccCCCCCceEEcCCcccEEEEcCCCCCCCCCCeEEEEee
Q 018026          221 RNNNFSVGDILVFDYPAR-VHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       221 ~~~~f~vGD~LvF~y~~~-~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      ...++++||+|.|.+... .|+|.-+...+.+   -...+..--.-..+++++++|.|.|+|.-  |=..|||..|.|.
T Consensus        54 A~v~v~pGDTVtw~~~d~~~Hnv~~~~~~~~~---g~~~~~~~~~~s~~~Tfe~~G~Y~Y~C~P--H~~~gM~G~IvV~  127 (128)
T COG3794          54 AEVTVKPGDTVTWVNTDSVGHNVTAVGGMDPE---GSGTLKAGINESFTHTFETPGEYTYYCTP--HPGMGMKGKIVVG  127 (128)
T ss_pred             cEEEECCCCEEEEEECCCCCceEEEeCCCCcc---cccccccCCCcceEEEecccceEEEEecc--CCCCCcEEEEEeC
Confidence            779999999999999777 9999876554211   11111111122467899999999999995  9999999999985

>PRK02710 plastocyanin; Provisional

Probab=97.94  E-value=6.2e-05  Score=63.64  Aligned_cols=89  Identities=17%  Similarity=0.232  Sum_probs=59.4

Q ss_pred             CceeeeeeccCCcccCCCCCCCccccccCCceecCCEEEEEe-CCCCceEEEEcccccCCCCCCCCCccCCCC-CceEEc
Q 018026          194 QPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDY-PARVHDVVEVTKAAYDSCNSSSTISKSTNP-PTRITL  271 (362)
Q Consensus       194 ~~~~~~VG~~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y-~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G-~~~v~l  271 (362)
                      ...++.+|.+.|+-       .|..  +..++++||+|.|.- +...|+++.- ..  +..... .. ....| ..++++
T Consensus        29 ~~~~V~~~~~~~~~-------~F~P--~~i~v~~Gd~V~~~N~~~~~H~v~~~-~~--~~~~~~-~~-~~~pg~t~~~tF   94 (119)
T PRK02710         29 ETVEVKMGSDAGML-------AFEP--STLTIKAGDTVKWVNNKLAPHNAVFD-GA--KELSHK-DL-AFAPGESWEETF   94 (119)
T ss_pred             ceEEEEEccCCCee-------EEeC--CEEEEcCCCEEEEEECCCCCceEEec-CC--cccccc-cc-ccCCCCEEEEEe
Confidence            44566777665542       2444  778999999999976 3467998531 11  111001 11 12233 467888


Q ss_pred             CCcccEEEEcCCCCCCCCCCeEEEEee
Q 018026          272 GTAGEHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       272 ~~~G~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      +.+|.|.|+|.  .|=+.|||..|.|.
T Consensus        95 ~~~G~y~y~C~--~H~~~gM~G~I~V~  119 (119)
T PRK02710         95 SEAGTYTYYCE--PHRGAGMVGKITVE  119 (119)
T ss_pred             cCCEEEEEEcC--CCccCCcEEEEEEC
Confidence            99999999999  79999999999984

>TIGR02375 pseudoazurin pseudoazurin

Probab=97.93  E-value=5.2e-05  Score=64.04  Aligned_cols=75  Identities=23%  Similarity=0.222  Sum_probs=55.0

Q ss_pred             cCceeeeCCEEEEeecCCCccEEEeCccccCCCCCCCCCCcCCCCCcEEEEeeccceEEEcCCCCCCCCCCeeeEEeecC
Q 018026           48 ANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSAR  127 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l~~~G~~yFic~~~~HC~~Gmk~~I~V~~~  127 (362)
                      ...++++||+|.|.+....|+|..+.....+.   .+......+....++++++|.|-|+|.  .|=..||+..|.|...
T Consensus        15 ~~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~g---~~~~~s~~g~~~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~   89 (116)
T TIGR02375        15 AYIRAAPGDTVTFVPTDKGHNVETIKGMIPEG---AEAFKSKINEEYTVTVTEEGVYGVKCT--PHYGMGMVALIQVGDP   89 (116)
T ss_pred             CEEEECCCCEEEEEECCCCeeEEEccCCCcCC---cccccCCCCCEEEEEeCCCEEEEEEcC--CCccCCCEEEEEECCC
Confidence            78899999999999987789997542211111   111111123346789999999999998  6999999999999874

Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.

>TIGR02375 pseudoazurin pseudoazurin

Probab=97.86  E-value=8.3e-05  Score=62.83  Aligned_cols=79  Identities=16%  Similarity=0.198  Sum_probs=57.1

Q ss_pred             CccccccCCceecCCEEEEEeCCCCceEEEEcccccCCCCCCCCCccCCCCCceEEcCCcccEEEEcCCCCCCCCCCeEE
Q 018026          215 GYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLA  294 (362)
Q Consensus       215 ~Y~~Wa~~~~f~vGD~LvF~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~HC~~GmKl~  294 (362)
                      .|+.  ...++++||+|.|.+....|+|..+.....+.   .+....-.+....++++++|.|-|+|.  .|=..||+..
T Consensus        11 ~F~P--~~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~g---~~~~~s~~g~~~~~tF~~~G~Y~Y~C~--pH~~~GM~G~   83 (116)
T TIGR02375        11 VFEP--AYIRAAPGDTVTFVPTDKGHNVETIKGMIPEG---AEAFKSKINEEYTVTVTEEGVYGVKCT--PHYGMGMVAL   83 (116)
T ss_pred             EEeC--CEEEECCCCEEEEEECCCCeeEEEccCCCcCC---cccccCCCCCEEEEEeCCCEEEEEEcC--CCccCCCEEE
Confidence            3555  77899999999999977789997543211111   111111123446789999999999999  7999999999


Q ss_pred             EEeeCC
Q 018026          295 VNVTGG  300 (362)
Q Consensus       295 I~V~~~  300 (362)
                      |.|...
T Consensus        84 V~Vg~~   89 (116)
T TIGR02375        84 IQVGDP   89 (116)
T ss_pred             EEECCC
Confidence            999764

Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.

>TIGR03095 rusti_cyanin rusticyanin

Probab=96.96  E-value=0.0021  Score=56.59  Aligned_cols=77  Identities=17%  Similarity=0.345  Sum_probs=48.8

Q ss_pred             CceeeeCCEEEEeecCC----CccEEEeCcc-cc-----------C-CCCCCCCCCcC--CCCCcEEEEeeccceEEEcC
Q 018026           49 NQTFTVGDTLVFNFAAG----NHDVTRVTQS-SF-----------N-ACNTTSPLSRT--TNSPASVTLTASGPHYFICS  109 (362)
Q Consensus        49 ~~~f~vGD~L~F~~~~~----~h~V~~V~~~-~y-----------~-~C~~~~~i~~~--~~G~~~v~l~~~G~~yFic~  109 (362)
                      ..+++.||+|+|.+.+.    .|........ .+           . .|....+....  .....+++++++|.|||+|.
T Consensus        53 ~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~~tf~f~~aGtywyhC~  132 (148)
T TIGR03095        53 TIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTDFTYHFSTAGTYWYLCT  132 (148)
T ss_pred             EEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccceeEEEEECCCCeEEEEEcC
Confidence            34578999999988764    4555543211 11           0 12211111100  01235677789999999999


Q ss_pred             CCCCCCCCCeeeEEee
Q 018026          110 FPGHCLGGQKLAINVS  125 (362)
Q Consensus       110 ~~~HC~~Gmk~~I~V~  125 (362)
                      +++|=+.||+..|.|.
T Consensus       133 ~pgH~~~GM~G~iiV~  148 (148)
T TIGR03095       133 YPGHAENGMYGKIVVK  148 (148)
T ss_pred             ChhHHHCCCEEEEEEC
Confidence            9999999999998873

Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).

>TIGR03095 rusti_cyanin rusticyanin

Probab=96.94  E-value=0.0021  Score=56.56  Aligned_cols=76  Identities=18%  Similarity=0.251  Sum_probs=49.4

Q ss_pred             CceecCCEEEEEeCCC----CceEEEEccc-cc-----------C-CCCCCCCCcc--CCCCCceEEcCCcccEEEEcCC
Q 018026          223 NNFSVGDILVFDYPAR----VHDVVEVTKA-AY-----------D-SCNSSSTISK--STNPPTRITLGTAGEHYFFCTF  283 (362)
Q Consensus       223 ~~f~vGD~LvF~y~~~----~hsV~~v~~~-~y-----------~-~C~~~~~~~~--~~~G~~~v~l~~~G~~yFic~~  283 (362)
                      .+++.||+|.|.+.+.    .|.....+.. .+           . .|....+...  ......+++.+++|.|||+|..
T Consensus        54 I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~~tf~f~~aGtywyhC~~  133 (148)
T TIGR03095        54 IVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTDFTYHFSTAGTYWYLCTY  133 (148)
T ss_pred             EEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccceeEEEEECCCCeEEEEEcCC
Confidence            6789999999988543    4666554321 11           0 1211111000  0112457788899999999999


Q ss_pred             CCCCCCCCeEEEEee
Q 018026          284 PGHCSAGQKLAVNVT  298 (362)
Q Consensus       284 ~~HC~~GmKl~I~V~  298 (362)
                      ++|=+.||+..|.|.
T Consensus       134 pgH~~~GM~G~iiV~  148 (148)
T TIGR03095       134 PGHAENGMYGKIVVK  148 (148)
T ss_pred             hhHHHCCCEEEEEEC
Confidence            999999999999873

Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).

>TIGR02657 amicyanin amicyanin

Probab=96.87  E-value=0.0048  Score=48.62  Aligned_cols=72  Identities=19%  Similarity=0.195  Sum_probs=47.7

Q ss_pred             cCceeeeCCEEEEeecC-CCccEEEeCccccCCCCCCCCCCcCCCCCcEEEEeeccceEEEcCCCCCCCCCCeeeEEee
Q 018026           48 ANQTFTVGDTLVFNFAA-GNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~-~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l~~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      ...++++||+|.|.... ..|+|...+....+ =+..+.. ........++++++|.|-|+|...-    +||..|.|.
T Consensus        11 ~~i~v~~GdtVt~~N~d~~~Hnv~~~~g~~~~-~~~~~~~-~~~g~~~~~tf~~~G~y~y~C~~Hp----~M~G~v~V~   83 (83)
T TIGR02657        11 PELHVKVGDTVTWINREAMPHNVHFVAGVLGE-AALKGPM-MKKEQAYSLTFTEAGTYDYHCTPHP----FMRGKVVVE   83 (83)
T ss_pred             CEEEECCCCEEEEEECCCCCccEEecCCCCcc-ccccccc-cCCCCEEEEECCCCEEEEEEcCCCC----CCeEEEEEC
Confidence            66889999999997774 47999754322111 0011111 1122336789999999999999843    599999873

Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.

>TIGR02657 amicyanin amicyanin

Probab=96.82  E-value=0.0059  Score=48.10  Aligned_cols=75  Identities=19%  Similarity=0.172  Sum_probs=49.2

Q ss_pred             ccccccCCceecCCEEEEEeCC-CCceEEEEcccccCCCCCCCCCccCCCCCceEEcCCcccEEEEcCCCCCCCCCCeEE
Q 018026          216 YQNWARNNNFSVGDILVFDYPA-RVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLA  294 (362)
Q Consensus       216 Y~~Wa~~~~f~vGD~LvF~y~~-~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~HC~~GmKl~  294 (362)
                      |..  ...++++||+|.|.-+. ..|+|...+....+ =+.... ........+++++++|.|-|+|..-.    +||..
T Consensus         8 F~P--~~i~v~~GdtVt~~N~d~~~Hnv~~~~g~~~~-~~~~~~-~~~~g~~~~~tf~~~G~y~y~C~~Hp----~M~G~   79 (83)
T TIGR02657         8 YET--PELHVKVGDTVTWINREAMPHNVHFVAGVLGE-AALKGP-MMKKEQAYSLTFTEAGTYDYHCTPHP----FMRGK   79 (83)
T ss_pred             EcC--CEEEECCCCEEEEEECCCCCccEEecCCCCcc-cccccc-ccCCCCEEEEECCCCEEEEEEcCCCC----CCeEE
Confidence            555  66899999999998764 47999754322111 000111 11122346789999999999999743    59999


Q ss_pred             EEee
Q 018026          295 VNVT  298 (362)
Q Consensus       295 I~V~  298 (362)
                      |.|.
T Consensus        80 v~V~   83 (83)
T TIGR02657        80 VVVE   83 (83)
T ss_pred             EEEC
Confidence            9884

Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.

>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus

Probab=95.56  E-value=0.061  Score=49.35  Aligned_cols=78  Identities=17%  Similarity=0.204  Sum_probs=49.5

Q ss_pred             ceecCCEEEEEeCC---CCceEEEEc-ccccCCCCCC---CCCc-------------cCCCCCce---EEcCCcccEEEE
Q 018026          224 NFSVGDILVFDYPA---RVHDVVEVT-KAAYDSCNSS---STIS-------------KSTNPPTR---ITLGTAGEHYFF  280 (362)
Q Consensus       224 ~f~vGD~LvF~y~~---~~hsV~~v~-~~~y~~C~~~---~~~~-------------~~~~G~~~---v~l~~~G~~yFi  280 (362)
                      -+-.|-.|.|.|.+   -.|+++.|. ...+..|...   +.+-             ....|...   +.-..+|.||+.
T Consensus        89 ~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~aG~Ywlv  168 (196)
T PF06525_consen   89 YVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLPAGYYWLV  168 (196)
T ss_pred             EEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCCCceEEEE
Confidence            44579899998843   369998883 3233333221   1110             01122221   212367999999


Q ss_pred             cCCCCCCCCCCeEEEEeeCCC
Q 018026          281 CTFPGHCSAGQKLAVNVTGGS  301 (362)
Q Consensus       281 c~~~~HC~~GmKl~I~V~~~~  301 (362)
                      |+..||-+.||-..+.|...-
T Consensus       169 C~ipGHA~sGMw~~LiVs~~v  189 (196)
T PF06525_consen  169 CGIPGHAESGMWGVLIVSSNV  189 (196)
T ss_pred             ccCCChhhcCCEEEEEEecCc
Confidence            999999999999999997654

The most closely related proteins characterised as functionally different are the rusticyanins.

>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus

Probab=95.36  E-value=0.066  Score=49.11  Aligned_cols=77  Identities=17%  Similarity=0.261  Sum_probs=48.2

Q ss_pred             eeCCEEEEeecC---CCccEEEe-CccccCCCCCC---CCCC-------------cCCCCCc-EEEE--eeccceEEEcC
Q 018026           53 TVGDTLVFNFAA---GNHDVTRV-TQSSFNACNTT---SPLS-------------RTTNSPA-SVTL--TASGPHYFICS  109 (362)
Q Consensus        53 ~vGD~L~F~~~~---~~h~V~~V-~~~~y~~C~~~---~~i~-------------~~~~G~~-~v~l--~~~G~~yFic~  109 (362)
                      -.|-++.|.|.+   -.|++..| +...+..|..-   +.+-             ....|.. ...+  ..+|.||+.|+
T Consensus        91 PAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~aG~YwlvC~  170 (196)
T PF06525_consen   91 PAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLPAGYYWLVCG  170 (196)
T ss_pred             cCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCCCceEEEEcc
Confidence            368888887765   36998877 22333333211   1110             0112221 2222  36899999999


Q ss_pred             CCCCCCCCCeeeEEeecCCC
Q 018026          110 FPGHCLGGQKLAINVSARGS  129 (362)
Q Consensus       110 ~~~HC~~Gmk~~I~V~~~~~  129 (362)
                      ..+|=+.||-..+.|...-.
T Consensus       171 ipGHA~sGMw~~LiVs~~vt  190 (196)
T PF06525_consen  171 IPGHAESGMWGVLIVSSNVT  190 (196)
T ss_pred             CCChhhcCCEEEEEEecCcc
Confidence            99999999999999986543

The most closely related proteins characterised as functionally different are the rusticyanins.

>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]

Probab=94.80  E-value=0.55  Score=44.31  Aligned_cols=78  Identities=23%  Similarity=0.349  Sum_probs=43.9

Q ss_pred             eecCCEEEE---EeCCCC------ceEEEEcccccCCCCC-CCCCc------------------cCCCCCceEEcCCccc
Q 018026          225 FSVGDILVF---DYPARV------HDVVEVTKAAYDSCNS-SSTIS------------------KSTNPPTRITLGTAGE  276 (362)
Q Consensus       225 f~vGD~LvF---~y~~~~------hsV~~v~~~~y~~C~~-~~~~~------------------~~~~G~~~v~l~~~G~  276 (362)
                      .++||.|-+   +|+.+.      .-+++|+++.|+.|+. ..+..                  .++--..-+....-..
T Consensus        47 v~igD~ldIiCP~~e~~~~~~~E~yilYmV~~~~y~~C~~~s~~~~~~~C~rP~~~~kfsikFq~ftP~p~G~EF~pG~~  126 (233)
T KOG3858|consen   47 VQIGDYLDIICPHYEEGGPEGYEYYILYMVSEEEYDLCELRSKPFKRWECNRPSTPLKFSIKFQRFTPFPLGFEFQPGHT  126 (233)
T ss_pred             eccCCEEEEECCCCCCCCCCcceEEEEEEeChHHhhhhhccCCCcEEEEecCCCcchhhhhhheecCCCCCCccccCCCe
Confidence            445788876   343321      2356789999999996 22211                  1111111122222236


Q ss_pred             EEEEcC-----------CCCCCCC-CCeEEEEeeCCCC
Q 018026          277 HYFFCT-----------FPGHCSA-GQKLAVNVTGGSS  302 (362)
Q Consensus       277 ~yFic~-----------~~~HC~~-GmKl~I~V~~~~~  302 (362)
                      ||||++           .++-|.. .||+.+.|.....
T Consensus       127 YY~IStStg~~~g~~~~~ggvc~~~~mk~~~~V~~~~~  164 (233)
T KOG3858|consen  127 YYYISTSTGDAEGLCNLRGGVCVTRNMKLLMKVGQSPR  164 (233)
T ss_pred             EEEEeCCCccccccchhhCCEeccCCceEEEEecccCC
Confidence            777765           4566754 6999999976543

>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]

Probab=94.56  E-value=0.56  Score=41.55  Aligned_cols=79  Identities=20%  Similarity=0.302  Sum_probs=49.4

Q ss_pred             ccCceeeeCCEEEEeecCCCccEEEe--CccccC-----C--------CCCCCCC--CcCCCCCcEEEEeeccceEEEcC
Q 018026           47 AANQTFTVGDTLVFNFAAGNHDVTRV--TQSSFN-----A--------CNTTSPL--SRTTNSPASVTLTASGPHYFICS  109 (362)
Q Consensus        47 a~~~~f~vGD~L~F~~~~~~h~V~~V--~~~~y~-----~--------C~~~~~i--~~~~~G~~~v~l~~~G~~yFic~  109 (362)
                      .++..++-|-+++|.-.+....+.++  .+.+..     .        =+..+.+  .-..++..++.++.+|.|=|+|.
T Consensus        62 p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye~~C~  141 (158)
T COG4454          62 PSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYEFACN  141 (158)
T ss_pred             CCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCCccccCCcceeEeCCCCcEEEEEEecCCccEEEEec
Confidence            36778899999999665433333322  111111     0        0011111  11223445677788999999999


Q ss_pred             CCCCCCCCCeeeEEee
Q 018026          110 FPGHCLGGQKLAINVS  125 (362)
Q Consensus       110 ~~~HC~~Gmk~~I~V~  125 (362)
                      +++|-+.||...|+|.
T Consensus       142 iPGHy~AGM~g~itV~  157 (158)
T COG4454         142 IPGHYEAGMVGEITVS  157 (158)
T ss_pred             CCCcccCCcEEEEEeC
Confidence            9999999999999985

>TIGR03096 nitroso_cyanin nitrosocyanin

Probab=94.53  E-value=0.056  Score=46.85  Aligned_cols=66  Identities=9%  Similarity=0.145  Sum_probs=38.5

Q ss_pred             CCCccccCceeeeCCEEEEeecCC---CccEEEeCccccCCCCCCCCCCcCCCCCcEEEEeeccceEEEcCCCCCCC
Q 018026           42 TYSNWAANQTFTVGDTLVFNFAAG---NHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCL  115 (362)
Q Consensus        42 ~y~~Wa~~~~f~vGD~L~F~~~~~---~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l~~~G~~yFic~~~~HC~  115 (362)
                      +|.-=.+..+++.||.+.+.|.+.   .|++.-   .+|.   ....+....+....++.+++|.|+|+|..  ||.
T Consensus        55 n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i---~~~g---is~~I~pGet~TitF~adKpG~Y~y~C~~--HP~  123 (135)
T TIGR03096        55 NVLNEPEALVVKKGTPVKVTVENKSPISEGFSI---DAYG---ISEVIKAGETKTISFKADKAGAFTIWCQL--HPK  123 (135)
T ss_pred             eeEEcCCEEEECCCCEEEEEEEeCCCCccceEE---CCCC---cceEECCCCeEEEEEECCCCEEEEEeCCC--CCh
Confidence            344444778899999999977642   244432   2222   11111111122234666899999999987  663

Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.

>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]

Probab=94.22  E-value=0.18  Score=47.43  Aligned_cols=33  Identities=18%  Similarity=0.422  Sum_probs=24.0

Q ss_pred             ceeeeCCEEEE---eecCCCc------cEEEeCccccCCCCC
Q 018026           50 QTFTVGDTLVF---NFAAGNH------DVTRVTQSSFNACNT   82 (362)
Q Consensus        50 ~~f~vGD~L~F---~~~~~~h------~V~~V~~~~y~~C~~   82 (362)
                      +..++||.|-+   +|+.+.-      -++.|++..|+.|+.
T Consensus        45 I~v~igD~ldIiCP~~e~~~~~~~E~yilYmV~~~~y~~C~~   86 (233)
T KOG3858|consen   45 IYVQIGDYLDIICPHYEEGGPEGYEYYILYMVSEEEYDLCEL   86 (233)
T ss_pred             EEeccCCEEEEECCCCCCCCCCcceEEEEEEeChHHhhhhhc
Confidence            45677999877   5664332      246789999999996

>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D

Probab=93.94  E-value=0.022  Score=46.54  Aligned_cols=64  Identities=19%  Similarity=0.294  Sum_probs=29.6

Q ss_pred             cCceeeeCCEEEEeecC---CCccEEEeCccccCCCCCCCCCCcCCCCC-cEEEE--eeccceEEEcCCCCCCCCCCeee
Q 018026           48 ANQTFTVGDTLVFNFAA---GNHDVTRVTQSSFNACNTTSPLSRTTNSP-ASVTL--TASGPHYFICSFPGHCLGGQKLA  121 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~---~~h~V~~V~~~~y~~C~~~~~i~~~~~G~-~~v~l--~~~G~~yFic~~~~HC~~Gmk~~  121 (362)
                      +..+++.|+.+.+.|.+   ..|++.. .+.+.+        ....-|. .++++  +++|.|=|+|+++.+    ||..
T Consensus        35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i-~~~~~~--------~~l~~g~~~~~~f~~~~~G~y~~~C~~~~~----m~G~  101 (104)
T PF13473_consen   35 STITVKAGQPVTLTFTNNDSRPHEFVI-PDLGIS--------KVLPPGETATVTFTPLKPGEYEFYCTMHPN----MKGT  101 (104)
T ss_dssp             -EEEEETTCEEEEEEEE-SSS-EEEEE-GGGTEE--------EEE-TT-EEEEEEEE-S-EEEEEB-SSS-T----TB--
T ss_pred             CEEEEcCCCeEEEEEEECCCCcEEEEE-CCCceE--------EEECCCCEEEEEEcCCCCEEEEEEcCCCCc----ceec
Confidence            67899999955555543   3466532 221111        1122222 44555  899999999997553    6666


Q ss_pred             EEe
Q 018026          122 INV  124 (362)
Q Consensus       122 I~V  124 (362)
                      |.|
T Consensus       102 liV  104 (104)
T PF13473_consen  102 LIV  104 (104)
T ss_dssp             ---
T ss_pred             ccC
Confidence            554

>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO)

Probab=93.12  E-value=0.038  Score=48.49  Aligned_cols=34  Identities=24%  Similarity=0.386  Sum_probs=24.4

Q ss_pred             CceecCCEEEEE---eCCC--------CceEEEEcccccCCCCCC
Q 018026          223 NNFSVGDILVFD---YPAR--------VHDVVEVTKAAYDSCNSS  256 (362)
Q Consensus       223 ~~f~vGD~LvF~---y~~~--------~hsV~~v~~~~y~~C~~~  256 (362)
                      ..+++||.|-|-   |+..        ...+++|++++|+.|+..
T Consensus        24 i~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~   68 (145)
T PF00812_consen   24 IEVRIGDYLDIICPHYEPGGPPPEEYEYYILYMVSEEGYESCSLT   68 (145)
T ss_dssp             EEE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE-HHHHHHTBSS
T ss_pred             EEecCCCEEEEECCCCCCCCCCCCCceEEEEEEEcHHHhcccCCC
Confidence            467899999884   4333        457888999999999963

These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....

>TIGR03096 nitroso_cyanin nitrosocyanin

Probab=92.58  E-value=0.12  Score=44.81  Aligned_cols=60  Identities=15%  Similarity=0.204  Sum_probs=36.3

Q ss_pred             cCCceecCCEEEEEeCCC---CceEEEEcccccCCCCCCCCCccCCCCCceEEcCCcccEEEEcCCCCCCC
Q 018026          221 RNNNFSVGDILVFDYPAR---VHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCS  288 (362)
Q Consensus       221 ~~~~f~vGD~LvF~y~~~---~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~HC~  288 (362)
                      +..+++.||.|.+.+.+.   .|.+..   .+|+   ....+....+-..+++.+++|.|+|+|+.  ||.
T Consensus        61 ~~I~VkaGD~Vtl~vtN~d~~~H~f~i---~~~g---is~~I~pGet~TitF~adKpG~Y~y~C~~--HP~  123 (135)
T TIGR03096        61 EALVVKKGTPVKVTVENKSPISEGFSI---DAYG---ISEVIKAGETKTISFKADKAGAFTIWCQL--HPK  123 (135)
T ss_pred             CEEEECCCCEEEEEEEeCCCCccceEE---CCCC---cceEECCCCeEEEEEECCCCEEEEEeCCC--CCh
Confidence            678999999999877532   244422   2221   11111111222235677999999999997  774

Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.

>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]

Probab=92.33  E-value=0.46  Score=42.06  Aligned_cols=78  Identities=19%  Similarity=0.279  Sum_probs=50.5

Q ss_pred             cCCceecCCEEEEEeCCCCceEEEEc--ccccCC-------------CCCCCC--CccCCCCCceEEcCCcccEEEEcCC
Q 018026          221 RNNNFSVGDILVFDYPARVHDVVEVT--KAAYDS-------------CNSSST--ISKSTNPPTRITLGTAGEHYFFCTF  283 (362)
Q Consensus       221 ~~~~f~vGD~LvF~y~~~~hsV~~v~--~~~y~~-------------C~~~~~--~~~~~~G~~~v~l~~~G~~yFic~~  283 (362)
                      ++..++-|.+++|.-+.....+++++  +.+...             -+..+.  +....++...+.+..+|.|=|+|.+
T Consensus        63 ~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye~~C~i  142 (158)
T COG4454          63 SSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYEFACNI  142 (158)
T ss_pred             CcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCCccccCCcceeEeCCCCcEEEEEEecCCccEEEEecC
Confidence            56778888888886654433333331  111110             011111  1223444567888999999999999


Q ss_pred             CCCCCCCCeEEEEee
Q 018026          284 PGHCSAGQKLAVNVT  298 (362)
Q Consensus       284 ~~HC~~GmKl~I~V~  298 (362)
                      ++|-+.||...|+|.
T Consensus       143 PGHy~AGM~g~itV~  157 (158)
T COG4454         143 PGHYEAGMVGEITVS  157 (158)
T ss_pred             CCcccCCcEEEEEeC
Confidence            999999999999996

>TIGR03094 sulfo_cyanin sulfocyanin

Probab=91.64  E-value=0.67  Score=42.16  Aligned_cols=31  Identities=26%  Similarity=0.516  Sum_probs=27.0

Q ss_pred             eeccceEEEcCCCCCCCCCCeeeEEeecCCC
Q 018026           99 TASGPHYFICSFPGHCLGGQKLAINVSARGS  129 (362)
Q Consensus        99 ~~~G~~yFic~~~~HC~~Gmk~~I~V~~~~~  129 (362)
                      ..+|.||+.|+..+|-+.||-..+.|...-.
T Consensus       159 ~~~G~YwlvCgipGHAesGMw~~lIVSs~vt  189 (195)
T TIGR03094       159 TSAGKYWLVCGITGHAESGMWAVVIVSSNVT  189 (195)
T ss_pred             CCCeeEEEEcccCChhhcCcEEEEEEecCcc
Confidence            4789999999999999999999988876533

Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.

>TIGR03094 sulfo_cyanin sulfocyanin

Probab=90.09  E-value=0.45  Score=43.20  Aligned_cols=30  Identities=27%  Similarity=0.521  Sum_probs=26.5

Q ss_pred             CCcccEEEEcCCCCCCCCCCeEEEEeeCCC
Q 018026          272 GTAGEHYFFCTFPGHCSAGQKLAVNVTGGS  301 (362)
Q Consensus       272 ~~~G~~yFic~~~~HC~~GmKl~I~V~~~~  301 (362)
                      ..+|.||+.|+..||-+.||=..+.|...-
T Consensus       159 ~~~G~YwlvCgipGHAesGMw~~lIVSs~v  188 (195)
T TIGR03094       159 TSAGKYWLVCGITGHAESGMWAVVIVSSNV  188 (195)
T ss_pred             CCCeeEEEEcccCChhhcCcEEEEEEecCc
Confidence            368999999999999999999888887654

Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.

>PLN02604 oxidoreductase

Probab=89.43  E-value=1.8  Score=46.08  Aligned_cols=80  Identities=14%  Similarity=0.182  Sum_probs=50.3

Q ss_pred             cCceeeeCCEEEEeecCCC----ccEEE--eC--ccc-cCCCC--CCCCCCcCCCCCcEEEEeeccceEEEcCCCCCCCC
Q 018026           48 ANQTFTVGDTLVFNFAAGN----HDVTR--VT--QSS-FNACN--TTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLG  116 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~~~----h~V~~--V~--~~~-y~~C~--~~~~i~~~~~G~~~v~l~~~G~~yFic~~~~HC~~  116 (362)
                      -..+++.||+|++++.+..    |++..  +.  ... +|.=.  ..-+|.-..+-...|+++.+|++||-|....|-..
T Consensus        55 P~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~~~~Gt~wyH~H~~~q~~~  134 (566)
T PLN02604         55 PTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGTEGVTQCPILPGETFTYEFVVDRPGTYLYHAHYGMQREA  134 (566)
T ss_pred             CcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccCCCccccCccCCCCeEEEEEEcCCCEEEEEeeCcHHHHhC
Confidence            4578999999999887642    33321  00  011 11100  00122222222346778899999999999999999


Q ss_pred             CCeeeEEeecC
Q 018026          117 GQKLAINVSAR  127 (362)
Q Consensus       117 Gmk~~I~V~~~  127 (362)
                      ||...|.|...
T Consensus       135 Gl~G~liV~~~  145 (566)
T PLN02604        135 GLYGSIRVSLP  145 (566)
T ss_pred             CCeEEEEEEec
Confidence            99999999754

>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing

Probab=89.16  E-value=0.79  Score=45.07  Aligned_cols=79  Identities=18%  Similarity=0.209  Sum_probs=47.6

Q ss_pred             CceeeeCCEEEEeecCC-----CccEEEeCccccCCCCCCCCCCcCCCCCcEEEEeeccceEEEcCC----CCCCCCCCe
Q 018026           49 NQTFTVGDTLVFNFAAG-----NHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSF----PGHCLGGQK  119 (362)
Q Consensus        49 ~~~f~vGD~L~F~~~~~-----~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l~~~G~~yFic~~----~~HC~~Gmk  119 (362)
                      ..+++.||+|+.++.+.     .|++..=-....+.=.....+.-..+-...|+++.+|.+||.|..    ..|=..||.
T Consensus        60 ~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~dg~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~Gl~  139 (311)
T TIGR02376        60 LIRVHEGDYVELTLINPPTNTMPHNVDFHAATGALGGAALTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVSGMN  139 (311)
T ss_pred             eEEEECCCEEEEEEEeCCCCCCceeeeecCCCccCCCCcceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhcCcc
Confidence            46889999999988764     355532100000000000001111222246777889999999995    347788999


Q ss_pred             eeEEeecC
Q 018026          120 LAINVSAR  127 (362)
Q Consensus       120 ~~I~V~~~  127 (362)
                      ..|.|...
T Consensus       140 G~liV~~~  147 (311)
T TIGR02376       140 GAIMVLPR  147 (311)
T ss_pred             eEEEeecc
Confidence            99999753

This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.

>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D

Probab=88.25  E-value=0.34  Score=39.47  Aligned_cols=64  Identities=19%  Similarity=0.277  Sum_probs=30.0

Q ss_pred             cCCceecCCEEEEEeC---CCCceEEEEcccccCCCCCCCCCccCCCCC-ceEEc--CCcccEEEEcCCCCCCCCCCeEE
Q 018026          221 RNNNFSVGDILVFDYP---ARVHDVVEVTKAAYDSCNSSSTISKSTNPP-TRITL--GTAGEHYFFCTFPGHCSAGQKLA  294 (362)
Q Consensus       221 ~~~~f~vGD~LvF~y~---~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~-~~v~l--~~~G~~yFic~~~~HC~~GmKl~  294 (362)
                      +..+++.|+.+.+.+.   ...|+++. .+-+        -......|. .++++  .++|.|=|+|+...+    ||..
T Consensus        35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i-~~~~--------~~~~l~~g~~~~~~f~~~~~G~y~~~C~~~~~----m~G~  101 (104)
T PF13473_consen   35 STITVKAGQPVTLTFTNNDSRPHEFVI-PDLG--------ISKVLPPGETATVTFTPLKPGEYEFYCTMHPN----MKGT  101 (104)
T ss_dssp             -EEEEETTCEEEEEEEE-SSS-EEEEE-GGGT--------EEEEE-TT-EEEEEEEE-S-EEEEEB-SSS-T----TB--
T ss_pred             CEEEEcCCCeEEEEEEECCCCcEEEEE-CCCc--------eEEEECCCCEEEEEEcCCCCEEEEEEcCCCCc----ceec
Confidence            6789999995555553   33465532 2211        111222232 34555  899999999997552    7766


Q ss_pred             EEe
Q 018026          295 VNV  297 (362)
Q Consensus       295 I~V  297 (362)
                      |.|
T Consensus       102 liV  104 (104)
T PF13473_consen  102 LIV  104 (104)
T ss_dssp             ---
T ss_pred             ccC
Confidence            654

>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO)

Probab=88.15  E-value=0.093  Score=46.10  Aligned_cols=77  Identities=26%  Similarity=0.468  Sum_probs=45.2

Q ss_pred             CceeeeCCEEEE---eecCC--------CccEEEeCccccCCCCCCCCC-C-------cCCCCCcEEEEe----------
Q 018026           49 NQTFTVGDTLVF---NFAAG--------NHDVTRVTQSSFNACNTTSPL-S-------RTTNSPASVTLT----------   99 (362)
Q Consensus        49 ~~~f~vGD~L~F---~~~~~--------~h~V~~V~~~~y~~C~~~~~i-~-------~~~~G~~~v~l~----------   99 (362)
                      ...+++||.|-|   +|...        ...+++|++.+|+.|+..... .       ....|+..|++.          
T Consensus        23 ~i~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~~~~kft~kFq~fSP~p~G  102 (145)
T PF00812_consen   23 VIEVRIGDYLDIICPHYEPGGPPPEEYEYYILYMVSEEGYESCSLTSRPRLLWECDRPEAPHGPKKFTIKFQEFSPFPLG  102 (145)
T ss_dssp             EEEE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE-HHHHHHTBSSTSEEEEEEE-TTTSTTSSEEEEEESSSS-SSTTS
T ss_pred             EEEecCCCEEEEECCCCCCCCCCCCCceEEEEEEEcHHHhcccCCCCCCcEEEEeCCCCCCCCCcEEEEEEEECCCCCCC
Confidence            356789999988   55443        456788999999999963211 1       111234444441          


Q ss_pred             ---ecc-ceEEEcCC-----------CCCCCC-CCeeeEEee
Q 018026          100 ---ASG-PHYFICSF-----------PGHCLG-GQKLAINVS  125 (362)
Q Consensus       100 ---~~G-~~yFic~~-----------~~HC~~-Gmk~~I~V~  125 (362)
                         .+| .||||+.-           +|-|.. .|||.|.|.
T Consensus       103 ~EF~pG~~YY~ISts~g~~~g~~~~~gG~C~~~~mkl~~~v~  144 (145)
T PF00812_consen  103 LEFQPGHDYYYISTSTGTQEGLDNRRGGLCLSHNMKLRIKVG  144 (145)
T ss_dssp             SS--TTEEEEEEEEESSSSTTTTSSBSCHHHEEEEEEEEECT
T ss_pred             eeecCCCeEEEEEccCCCCCCcccccccccCcCeeEEEEecC
Confidence               234 67888753           222654 688888874

These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....

>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing

Probab=87.14  E-value=1.1  Score=43.98  Aligned_cols=77  Identities=16%  Similarity=0.168  Sum_probs=48.5

Q ss_pred             CCceecCCEEEEEeCCC-----CceEEEEcccccCCCCCCCCCccCCCC---CceEEcCCcccEEEEcCC----CCCCCC
Q 018026          222 NNNFSVGDILVFDYPAR-----VHDVVEVTKAAYDSCNSSSTISKSTNP---PTRITLGTAGEHYFFCTF----PGHCSA  289 (362)
Q Consensus       222 ~~~f~vGD~LvF~y~~~-----~hsV~~v~~~~y~~C~~~~~~~~~~~G---~~~v~l~~~G~~yFic~~----~~HC~~  289 (362)
                      ..+++.||.|++.+.+.     .|++..=-....+   ..........|   ...|+++.+|.+||.|..    ..|=..
T Consensus        60 ~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~d---g~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~  136 (311)
T TIGR02376        60 LIRVHEGDYVELTLINPPTNTMPHNVDFHAATGAL---GGAALTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVS  136 (311)
T ss_pred             eEEEECCCEEEEEEEeCCCCCCceeeeecCCCccC---CCCcceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhc
Confidence            36789999999888654     4655431100000   00111112222   246788899999999995    457788


Q ss_pred             CCeEEEEeeCCC
Q 018026          290 GQKLAVNVTGGS  301 (362)
Q Consensus       290 GmKl~I~V~~~~  301 (362)
                      ||...|.|....
T Consensus       137 Gl~G~liV~~~~  148 (311)
T TIGR02376       137 GMNGAIMVLPRE  148 (311)
T ss_pred             CcceEEEeeccC
Confidence            999999998643

This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.

>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties

Probab=86.29  E-value=0.33  Score=40.79  Aligned_cols=79  Identities=16%  Similarity=0.172  Sum_probs=48.7

Q ss_pred             CceeeeCCEEEEeecCC---CccEEE----eCcc-ccCC--CCCCCCCCcCCCCCcEEEEee-ccceEEEcCCCCCCCCC
Q 018026           49 NQTFTVGDTLVFNFAAG---NHDVTR----VTQS-SFNA--CNTTSPLSRTTNSPASVTLTA-SGPHYFICSFPGHCLGG  117 (362)
Q Consensus        49 ~~~f~vGD~L~F~~~~~---~h~V~~----V~~~-~y~~--C~~~~~i~~~~~G~~~v~l~~-~G~~yFic~~~~HC~~G  117 (362)
                      .++++.||+|.+++.+.   .+++..    +... ..|.  .....++....+-...|+++. +|.+||-|....|=..|
T Consensus        27 tI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~~G  106 (117)
T PF07732_consen   27 TIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHVHGQQVMG  106 (117)
T ss_dssp             EEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECSTTHHHTT
T ss_pred             EEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEeeCCCchhcCc
Confidence            57899999999998853   344432    1111 0111  111122222222235688888 99999999998864589


Q ss_pred             CeeeEEeecC
Q 018026          118 QKLAINVSAR  127 (362)
Q Consensus       118 mk~~I~V~~~  127 (362)
                      |..+|.|...
T Consensus       107 L~G~~iV~~~  116 (117)
T PF07732_consen  107 LYGAIIVEPP  116 (117)
T ss_dssp             EEEEEEEE-T
T ss_pred             CEEEEEEcCC
Confidence            9999998753

Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....

>PLN02354 copper ion binding / oxidoreductase

Probab=85.90  E-value=5.5  Score=42.39  Aligned_cols=79  Identities=19%  Similarity=0.166  Sum_probs=50.6

Q ss_pred             CceeeeCCEEEEeecCC--------CccEEEeCccccCC-CCCCCCCCcCCCCCcEEEE-eeccceEEEcCCCCCCCCCC
Q 018026           49 NQTFTVGDTLVFNFAAG--------NHDVTRVTQSSFNA-CNTTSPLSRTTNSPASVTL-TASGPHYFICSFPGHCLGGQ  118 (362)
Q Consensus        49 ~~~f~vGD~L~F~~~~~--------~h~V~~V~~~~y~~-C~~~~~i~~~~~G~~~v~l-~~~G~~yFic~~~~HC~~Gm  118 (362)
                      .++++.||+|+.+..++        -|.+.|-.....|. -.+--+|.-..+-..+|++ +..|++||-+....+-..||
T Consensus        59 ~I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl  138 (552)
T PLN02354         59 NINSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGG  138 (552)
T ss_pred             cEEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCc
Confidence            35789999999887653        14454421111221 1111134333333456777 46899999999988988999


Q ss_pred             eeeEEeecC
Q 018026          119 KLAINVSAR  127 (362)
Q Consensus       119 k~~I~V~~~  127 (362)
                      ..+|.|...
T Consensus       139 ~G~lII~~~  147 (552)
T PLN02354        139 FGGLRVNSR  147 (552)
T ss_pred             cceEEEcCC
Confidence            999999754

>TIGR02695 azurin azurin

Probab=85.16  E-value=5.5  Score=34.13  Aligned_cols=29  Identities=38%  Similarity=0.708  Sum_probs=21.7

Q ss_pred             cEEEEe----eccc-eEEEcCCCCCCCCCCeeeEE
Q 018026           94 ASVTLT----ASGP-HYFICSFPGHCLGGQKLAIN  123 (362)
Q Consensus        94 ~~v~l~----~~G~-~yFic~~~~HC~~Gmk~~I~  123 (362)
                      +.|+++    ++|. |=|||++++|= ..||..+.
T Consensus        91 ~svtF~~~~l~~g~~Y~f~CSFPGH~-~~MkG~l~  124 (125)
T TIGR02695        91 TSVTFDVSKLSAGEDYTFFCSFPGHW-AMMRGTVK  124 (125)
T ss_pred             EEEEEECCCCCCCCcceEEEcCCCcH-HhceEEEe
Confidence            456665    3675 77999999996 47987764

Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.

>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen

Probab=85.01  E-value=0.69  Score=34.37  Aligned_cols=32  Identities=19%  Similarity=0.266  Sum_probs=24.4

Q ss_pred             CchHHHHHHHHHHHHhhhhccceEEEecCCCC
Q 018026            1 MFNRFFLAAIAIAALVQSSTAQTRHVVGDALG   32 (362)
Q Consensus         1 m~~~~~l~~~~~a~l~~~~~a~~~~~VGg~~G   32 (362)
                      ||.|++++.|+.++|+....++-+|.-|+.-.
T Consensus         1 MA~Kl~vialLC~aLva~vQ~APQYa~GeeP~   32 (65)
T PF10731_consen    1 MASKLIVIALLCVALVAIVQSAPQYAPGEEPS   32 (65)
T ss_pred             CcchhhHHHHHHHHHHHHHhcCcccCCCCCCC
Confidence            99999988887666666666668898887633

The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.

>TIGR02695 azurin azurin

Probab=83.10  E-value=8  Score=33.15  Aligned_cols=29  Identities=45%  Similarity=0.837  Sum_probs=21.5

Q ss_pred             ceEEcC----Cccc-EEEEcCCCCCCCCCCeEEEE
Q 018026          267 TRITLG----TAGE-HYFFCTFPGHCSAGQKLAVN  296 (362)
Q Consensus       267 ~~v~l~----~~G~-~yFic~~~~HC~~GmKl~I~  296 (362)
                      ++|+++    ++|. |=|||+++||=. .||..+.
T Consensus        91 ~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~  124 (125)
T TIGR02695        91 TSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK  124 (125)
T ss_pred             EEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence            445553    4675 779999999986 7988765

Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.

>PRK02888 nitrous-oxide reductase; Validated

Probab=82.77  E-value=2  Score=46.15  Aligned_cols=71  Identities=13%  Similarity=0.255  Sum_probs=42.7

Q ss_pred             cCceeeeCCEEEEeecCC------CccEEEeCccccCCCCCCCCCCcCCCCCcEEEEeeccceEEEcCCCCCCC---CCC
Q 018026           48 ANQTFTVGDTLVFNFAAG------NHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCL---GGQ  118 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~~------~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l~~~G~~yFic~~~~HC~---~Gm  118 (362)
                      +..++++||.+.|...+-      .|....   ..|.--   --+.-..+....|+.+++|.|||+|+.  .|.   .+|
T Consensus       555 ~~i~Vk~GDeVt~~lTN~d~~~DViHGF~I---p~~nI~---~dv~PG~t~svtF~adkPGvy~~~Cte--fCGa~H~~M  626 (635)
T PRK02888        555 REFTVKQGDEVTVIVTNLDKVEDLTHGFAI---PNYGVN---MEVAPQATASVTFTADKPGVYWYYCTW--FCHALHMEM  626 (635)
T ss_pred             ceEEecCCCEEEEEEEeCCcccccccceee---cccCcc---EEEcCCceEEEEEEcCCCEEEEEECCc--ccccCcccc
Confidence            467899999999999762      233321   111100   000011122245677899999999997  343   378


Q ss_pred             eeeEEeec
Q 018026          119 KLAINVSA  126 (362)
Q Consensus       119 k~~I~V~~  126 (362)
                      +..|.|..
T Consensus       627 ~G~~iVep  634 (635)
T PRK02888        627 RGRMLVEP  634 (635)
T ss_pred             eEEEEEEe
Confidence            88888863

>PRK02888 nitrous-oxide reductase; Validated

Probab=82.54  E-value=2.3  Score=45.63  Aligned_cols=71  Identities=15%  Similarity=0.302  Sum_probs=44.0

Q ss_pred             cCCceecCCEEEEEeCCC------CceEEEEcccccCCCCCCCCCccCCCCCceEEcCCcccEEEEcCCCCCCC---CCC
Q 018026          221 RNNNFSVGDILVFDYPAR------VHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCS---AGQ  291 (362)
Q Consensus       221 ~~~~f~vGD~LvF~y~~~------~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~HC~---~Gm  291 (362)
                      +..++++||.|.|...+-      .|....   ..|+-   .--+........+|+.+++|.|||+|+.  .|.   .+|
T Consensus       555 ~~i~Vk~GDeVt~~lTN~d~~~DViHGF~I---p~~nI---~~dv~PG~t~svtF~adkPGvy~~~Cte--fCGa~H~~M  626 (635)
T PRK02888        555 REFTVKQGDEVTVIVTNLDKVEDLTHGFAI---PNYGV---NMEVAPQATASVTFTADKPGVYWYYCTW--FCHALHMEM  626 (635)
T ss_pred             ceEEecCCCEEEEEEEeCCcccccccceee---cccCc---cEEEcCCceEEEEEEcCCCEEEEEECCc--ccccCcccc
Confidence            557899999999999652      233321   11110   0001111222345778999999999997  344   379


Q ss_pred             eEEEEeeC
Q 018026          292 KLAVNVTG  299 (362)
Q Consensus       292 Kl~I~V~~  299 (362)
                      +..|.|.+
T Consensus       627 ~G~~iVep  634 (635)
T PRK02888        627 RGRMLVEP  634 (635)
T ss_pred             eEEEEEEe
Confidence            99999864

>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP)

Probab=80.10  E-value=20  Score=34.65  Aligned_cols=37  Identities=14%  Similarity=0.189  Sum_probs=21.1

Q ss_pred             CCceecCCEEEEEeCC-----------CCceEEEE---cccccCCCCCCCC
Q 018026          222 NNNFSVGDILVFDYPA-----------RVHDVVEV---TKAAYDSCNSSST  258 (362)
Q Consensus       222 ~~~f~vGD~LvF~y~~-----------~~hsV~~v---~~~~y~~C~~~~~  258 (362)
                      ..++.-|-.|.-+...           .+++++.+   ++.-|..-+..|.
T Consensus       132 a~~L~yG~alls~~~~~~~~~~~~~p~andt~v~lgrld~kl~a~ae~dn~  182 (297)
T PF07174_consen  132 ASHLDYGSALLSKQTGEPPMPGQPPPVANDTSVVLGRLDLKLFASAEPDNT  182 (297)
T ss_pred             cceeecceeeeccCCCCCCCCCCCCCcCCCceEEeccccccccccccCChH
Confidence            3455557777766431           24555544   6667776665553

Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	362
1x9r_A	116	Umecyanin From Horse Raddish- Crystal Structure Of		8e-21
1x9r_A	116	Umecyanin From Horse Raddish- Crystal Structure Of		4e-14
1jer_A	138	Cucumber Stellacyanin, Cu2+, Ph 7.0 Length = 138		3e-19
1jer_A	138	Cucumber Stellacyanin, Cu2+, Ph 7.0 Length = 138		3e-13
1ws7_A	109	Crystal Structure Of Mavicyanin From Cucurbita Pepo		3e-18
1ws7_A	109	Crystal Structure Of Mavicyanin From Cucurbita Pepo		2e-12
2cbp_A	96	Cucumber Basic Protein, A Blue Copper Protein Lengt		8e-12
2cbp_A	96	Cucumber Basic Protein, A Blue Copper Protein Lengt		9e-12
1f56_A	91	Spinach Plantacyanin Length = 91		1e-11
1f56_A	91	Spinach Plantacyanin Length = 91		8e-11

>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The Oxidised Form Length = 116

Iteration: 1
 Score = 97.8 bits (242), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 45/98 (45%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Query: 27  VGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPL 86
           VG  + W  P + P  Y  WA  +TF VGD L F+FAAG HDV  VT+ +F+ C   +P+
Sbjct: 6   VGGDMEWKRPSD-PKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPI 64
Query: 87  SRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
           S  T  P  + L  +GP Y+IC+   HC  GQKL+INV
Sbjct: 65  SHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINV 102

>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The Oxidised Form Length = 116

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/98 (39%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 200 VGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDXXXXXXXX 259
           VGG + W  P +    Y  WA    F VGD L FD+ A +HDV  VTK A+D        
Sbjct: 6   VGGDMEWKRPSDPKF-YITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPI 64
Query: 260 XXXXXXXXRITLGTAGEHYFFCTFPGHCSAGQKLAVNV 297
                   +I L T G  Y+ CT   HC  GQKL++NV
Sbjct: 65  SHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINV 102

>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0 Length = 138

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 52/106 (49%), Positives = 66/106 (62%), Gaps = 7/106 (6%)
Query: 23  TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRV-TQSSFNAC- 80
           T H+VGD  GW VP + P  YS WAA +TF VGD+L FNF A  H+V  + T+ SF+AC 
Sbjct: 4   TVHIVGDNTGWSVP-SSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACN 62
Query: 81  --NTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
             N+ + + RT  SP    L   G HYF+C+   HC  GQKL+INV
Sbjct: 63  FVNSDNDVERT--SPVIERLDELGMHYFVCTVGTHCSNGQKLSINV 106

>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0 Length = 138

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 198 HVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEV-TKAAYDXXXXX 256
           H+VG   GW+VP + +  Y  WA    F VGD L F++PA  H+V E+ TK ++D     
Sbjct: 6   HIVGDNTGWSVPSSPNF-YSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFV 64
Query: 257 XXXXXXXXXXXRIT-LGTAGEHYFFCTFPGHCSAGQKLAVNV 297
                       I  L   G HYF CT   HCS GQKL++NV
Sbjct: 65  NSDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSINV 106

>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo Medullosa (Zucchini) Length = 109

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Query: 23  TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNT 82
           T H VGD+ GW      P  Y+ WA++  F VGD+L+FN+    H+V +V Q  F +CN+
Sbjct: 3   TVHKVGDSTGWTTLV--PYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNS 60
Query: 83  TSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
           +SP +  T+   S+ L   G  YF+C  PGHC  GQK+ I V
Sbjct: 61  SSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKV 102

>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo Medullosa (Zucchini) Length = 109

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 198 HVVGGALGWT--VPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDXXXX 255
           H VG + GWT  VP +    Y  WA +N F VGD L+F+Y  + H+V++V +  +     
Sbjct: 5   HKVGDSTGWTTLVPYD----YAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNS 60
Query: 256 XXXXXXXXXXXXRITLGTAGEHYFFCTFPGHCSAGQKLAVNV 297
                        I L   G  YF C  PGHC  GQK+ + V
Sbjct: 61  SSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKV 102

>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein Length = 96

Iteration: 1
 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 7/99 (7%)
Query: 25  HVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTS 84
           +VVG + GW           +W   + F  GD L+FN+    H+V  V Q  F+ CNT +
Sbjct: 3   YVVGGSGGWTF------NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPA 56
Query: 85  PLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAIN 123
                T+    + L   G  YFIC+FPGHC  G K+A+N
Sbjct: 57  GAKVYTSGRDQIKL-PKGQSYFICNFPGHCQSGMKIAVN 94

>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein Length = 96

Iteration: 1
 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 7/99 (7%)
Query: 198 HVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDXXXXXX 257
           +VVGG+ GWT         ++W +   F  GDIL+F+Y   +H+VV V +  +       
Sbjct: 3   YVVGGSGGWTFNT------ESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPA 56
Query: 258 XXXXXXXXXXRITLGTAGEHYFFCTFPGHCSAGQKLAVN 296
                     +I L   G+ YF C FPGHC +G K+AVN
Sbjct: 57  GAKVYTSGRDQIKL-PKGQSYFICNFPGHCQSGMKIAVN 94

>pdb|1F56|A Chain A, Spinach Plantacyanin Length = 91

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 31  LGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTT 90
           +GW    NG       A  ++F  GD LVF +  G H+V  V    + +C+        +
Sbjct: 5   IGWSFNVNG-------ARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYS 57
Query: 91  NSPASVTLTASGPHYFICSFPGHCLGGQKLAIN 123
           +    + LT  G +YFICSFPGHC GG K+AIN
Sbjct: 58  SGQDRIKLT-RGQNYFICSFPGHCGGGMKIAIN 89

>pdb|1F56|A Chain A, Spinach Plantacyanin Length = 91

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 204 LGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDXXXXXXXXXXXX 263
           +GW+   N        AR  +F  GD+LVF Y    H+VV V    Y             
Sbjct: 5   IGWSFNVNG-------ARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYS 57
Query: 264 XXXXRITLGTAGEHYFFCTFPGHCSAGQKLAVN 296
               RI L T G++YF C+FPGHC  G K+A+N
Sbjct: 58  SGQDRIKL-TRGQNYFICSFPGHCGGGMKIAIN 89

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	362
1x9u_A	116	Umecyanin; cupredoxin, phytocyanin, copper binding	3e-40
1x9u_A	116	Umecyanin; cupredoxin, phytocyanin, copper binding	1e-38
1ws8_A	109	Mavicyanin; oxidized form, phytocyanin, cupredoxin	7e-40
1ws8_A	109	Mavicyanin; oxidized form, phytocyanin, cupredoxin	7e-39
2cbp_A	96	Cucumber basic protein; electron transport, phytoc	8e-40
2cbp_A	96	Cucumber basic protein; electron transport, phytoc	7e-37
1f56_A	91	Plantacyanin; cupredoxin, copper protein, beta bar	5e-38
1f56_A	91	Plantacyanin; cupredoxin, copper protein, beta bar	2e-37
1jer_A	138	Cucumber stellacyanin; electron transport, copper,	2e-32
1jer_A	138	Cucumber stellacyanin; electron transport, copper,	3e-31
1eys_C	382	Photosynthetic reaction center; membrane protein c	3e-06
1eys_C	382	Photosynthetic reaction center; membrane protein c	1e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	4e-06
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	3e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	4e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	7e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	7e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	8e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	1e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	7e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	8e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	5e-06
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	3e-04
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	6e-06
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	1e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	3e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	4e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	6e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	1e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	2e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	3e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	8e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	2e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	7e-04
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	3e-04
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	4e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	7e-04

>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A Length = 116

 Score =  136 bits (345), Expect = 3e-40
 Identities = 48/114 (42%), Positives = 62/114 (54%), Gaps = 1/114 (0%)

Query: 198 HVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSS 257
           + VGG + W  P +    Y  WA    F VGD L FD+ A +HDV  VTK A+D+C   +
Sbjct: 4   YDVGGDMEWKRPSDPKF-YITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKEN 62

Query: 258 TISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGSSTAPSASPPS 311
            IS  T PP +I L T G  Y+ CT   HC  GQKL++NV G       A+P +
Sbjct: 63  PISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINVVGAGGAGGGATPGA 116

>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A Length = 116

 Score =  132 bits (334), Expect = 1e-38
 Identities = 48/114 (42%), Positives = 65/114 (57%), Gaps = 2/114 (1%)

Query: 25  HVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTS 84
           + VG  + W  P + P  Y  WA  +TF VGD L F+FAAG HDV  VT+ +F+ C   +
Sbjct: 4   YDVGGDMEWKRPSD-PKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKEN 62

Query: 85  PLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV-SARGSSPAPQPSS 137
           P+S  T  P  + L  +GP Y+IC+   HC  GQKL+INV  A G+     P +
Sbjct: 63  PISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINVVGAGGAGGGATPGA 116

>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A Length = 109

 Score =  136 bits (343), Expect = 7e-40
 Identities = 45/109 (41%), Positives = 60/109 (55%), Gaps = 2/109 (1%)

Query: 196 ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNS 255
             H VG + GWT        Y  WA +N F VGD L+F+Y  + H+V++V +  + SCNS
Sbjct: 3   TVHKVGDSTGWTTLVPYD--YAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNS 60

Query: 256 SSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGSSTA 304
           SS  +  T+    I L   G  YF C  PGHC  GQK+ + V  GSS+A
Sbjct: 61  SSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKVDPGSSSA 109

>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A Length = 109

 Score =  133 bits (336), Expect = 7e-39
 Identities = 44/108 (40%), Positives = 61/108 (56%), Gaps = 2/108 (1%)

Query: 23  TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNT 82
           T H VGD+ GW         Y+ WA++  F VGD+L+FN+    H+V +V Q  F +CN+
Sbjct: 3   TVHKVGDSTGWTTLVP--YDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNS 60

Query: 83  TSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSARGSS 130
           +SP +  T+   S+ L   G  YF+C  PGHC  GQK+ I V    SS
Sbjct: 61  SSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKVDPGSSS 108

>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1 Length = 96

 Score =  135 bits (341), Expect = 8e-40
 Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 7/102 (6%)

Query: 196 ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNS 255
           A +VVGG+ GWT         ++W +   F  GDIL+F+Y   +H+VV V +  + +CN+
Sbjct: 1   AVYVVGGSGGWTFN------TESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNT 54

Query: 256 SSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNV 297
            +     T+   +I L   G+ YF C FPGHC +G K+AVN 
Sbjct: 55  PAGAKVYTSGRDQIKLPK-GQSYFICNFPGHCQSGMKIAVNA 95

>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1 Length = 96

 Score =  127 bits (321), Expect = 7e-37
 Identities = 36/100 (36%), Positives = 50/100 (50%), Gaps = 7/100 (7%)

Query: 25  HVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTS 84
           +VVG + GW           +W   + F  GD L+FN+    H+V  V Q  F+ CNT +
Sbjct: 3   YVVGGSGGWTFN------TESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPA 56

Query: 85  PLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
                T+    + L   G  YFIC+FPGHC  G K+A+N 
Sbjct: 57  GAKVYTSGRDQIKLP-KGQSYFICNFPGHCQSGMKIAVNA 95

>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1 Length = 91

 Score =  130 bits (328), Expect = 5e-38
 Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 8/94 (8%)

Query: 204 LGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKST 263
           +GW+          N AR  +F  GD+LVF Y    H+VV V    Y SC++       +
Sbjct: 5   IGWSF-------NVNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYS 57

Query: 264 NPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNV 297
           +   RI L T G++YF C+FPGHC  G K+A+N 
Sbjct: 58  SGQDRIKL-TRGQNYFICSFPGHCGGGMKIAINA 90

>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1 Length = 91

 Score =  128 bits (324), Expect = 2e-37
 Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 8/94 (8%)

Query: 31  LGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTT 90
           +GW       +   N A  ++F  GD LVF +  G H+V  V    + +C+        +
Sbjct: 5   IGW-------SFNVNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYS 57

Query: 91  NSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
           +    + LT  G +YFICSFPGHC GG K+AIN 
Sbjct: 58  SGQDRIKLTR-GQNYFICSFPGHCGGGMKIAINA 90

>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1 Length = 138

 Score =  117 bits (295), Expect = 2e-32
 Identities = 56/134 (41%), Positives = 77/134 (57%), Gaps = 3/134 (2%)

Query: 23  TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRV-TQSSFNACN 81
           T H+VGD  GW VP + P  YS WAA +TF VGD+L FNF A  H+V  + T+ SF+ACN
Sbjct: 4   TVHIVGDNTGWSVPSS-PNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACN 62

Query: 82  TTSPLSRTTNSPASV-TLTASGPHYFICSFPGHCLGGQKLAINVSARGSSPAPQPSSPAP 140
             +  +    +   +  L   G HYF+C+   HC  GQKL+INV A  ++ +  P S +P
Sbjct: 63  FVNSDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSINVVAANATVSMPPPSSSP 122

Query: 141 QPSGSTPSPVPAPA 154
             S   P  +P P+
Sbjct: 123 PSSVMPPPVMPPPS 136

>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1 Length = 138

 Score =  114 bits (286), Expect = 3e-31
 Identities = 50/135 (37%), Positives = 69/135 (51%), Gaps = 3/135 (2%)

Query: 196 ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEV-TKAAYDSCN 254
             H+VG   GW+VP + +  Y  WA    F VGD L F++PA  H+V E+ TK ++D+CN
Sbjct: 4   TVHIVGDNTGWSVPSSPNF-YSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACN 62

Query: 255 SSSTISKSTNPPTRI-TLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGSSTAPSASPPSPT 313
             ++ +        I  L   G HYF CT   HCS GQKL++NV   ++T     P S  
Sbjct: 63  FVNSDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSINVVAANATVSMPPPSSSP 122

Query: 314 ATPPSTTTNPPPQSP 328
            +        PP SP
Sbjct: 123 PSSVMPPPVMPPPSP 137

>1eys_C Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: a.138.1.2 Length = 382

 Score = 47.6 bits (112), Expect = 3e-06
 Identities = 15/66 (22%), Positives = 18/66 (27%)

Query: 132 APQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAP 191
               +  A   S       PA A    P       PA    PA A         +  PAP
Sbjct: 310 KTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSVEPAP 369

Query: 192 TRQPAT 197
             + A 
Sbjct: 370 VEEVAP 375

>1eys_C Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: a.138.1.2 Length = 382

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 14/74 (18%), Positives = 20/74 (27%)

Query: 121 AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPT 180
            +  +A      P  +  +     +     P       PA    P  A       A +  
Sbjct: 307 GLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSVE 366

Query: 181 PTPRSAPTPAPTRQ 194
           P P     PAP  Q
Sbjct: 367 PAPVEEVAPAPAAQ 380

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 47.4 bits (112), Expect = 4e-06
 Identities = 19/80 (23%), Positives = 25/80 (31%), Gaps = 3/80 (3%)

Query: 128 GSSPA--PQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRS 185
           GSS       S   P+ S     P  +     +   A    P T P PAP   P P   +
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMVI-PSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGN 60

Query: 186 APTPAPTRQPATHVVGGALG 205
            P           ++ G  G
Sbjct: 61  PPDTVTGDSVLQRILRGPTG 80

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 44.7 bits (105), Expect = 3e-05
 Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 1/75 (1%)

Query: 136 SSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQP 195
           SS       S   P  +    P+ +   A          P + P P P   P PA    P
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGN-P 61

Query: 196 ATHVVGGALGWTVPP 210
              V G ++   +  
Sbjct: 62  PDTVTGDSVLQRILR 76

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 44.0 bits (103), Expect = 4e-05
 Identities = 15/71 (21%), Positives = 22/71 (30%)

Query: 127 RGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSA 186
             + P P P  P    +G+ P  V   +        P     T+  PA      P P + 
Sbjct: 42  PVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAP 101

Query: 187 PTPAPTRQPAT 197
            +  P    A 
Sbjct: 102 ASAPPAAGRAV 112

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 43.6 bits (102), Expect = 7e-05
 Identities = 12/71 (16%), Positives = 15/71 (21%), Gaps = 1/71 (1%)

Query: 125 SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 184
           S+           P        PS     A +   A    P     P P P  AP     
Sbjct: 3   SSHHHHHHSSGLVP-RGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNP 61

Query: 185 SAPTPAPTRQP 195
                  +   
Sbjct: 62  PDTVTGDSVLQ 72

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 43.6 bits (102), Expect = 7e-05
 Identities = 15/73 (20%), Positives = 19/73 (26%), Gaps = 3/73 (4%)

Query: 125 SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPA--PASAPTPT 182
           S+           P+     S  S   A    P   P PAP P   P     P +    +
Sbjct: 11  SSGLVPRGSHMVIPSASV-TSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDS 69

Query: 183 PRSAPTPAPTRQP 195
                   PT   
Sbjct: 70  VLQRILRGPTGPG 82

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 43.2 bits (101), Expect = 8e-05
 Identities = 17/81 (20%), Positives = 23/81 (28%)

Query: 130 SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTP 189
           S +   ++     +   P  VP PA  P PAPA    P T    +        P    T 
Sbjct: 25  SASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTT 84

Query: 190 APTRQPATHVVGGALGWTVPP 210
           +           G       P
Sbjct: 85  SLAPAVRYGRQPGPEAPASAP 105

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 11/70 (15%), Positives = 18/70 (25%), Gaps = 1/70 (1%)

Query: 144 GSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPATHVVGGA 203
           GS+       +            P+ + T A +            P P   P      G 
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMVI-PSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGN 60

Query: 204 LGWTVPPNAS 213
              TV  ++ 
Sbjct: 61  PPDTVTGDSV 70

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 40.1 bits (93), Expect = 7e-04
 Identities = 20/90 (22%), Positives = 26/90 (28%), Gaps = 9/90 (10%)

Query: 126 ARGSSPAPQPSSPAPQPSGSTPSPV--PAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 183
           A    PAP   +P    +G +        P    T + APA      P P   ++  P  
Sbjct: 49  APPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAA 108

Query: 184 RSA-------PTPAPTRQPATHVVGGALGW 206
             A       P P P       V      W
Sbjct: 109 GRAVPGLYHHPVPEPDPVRVEEVSRRIKRW 138

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 40.1 bits (93), Expect = 8e-04
 Identities = 16/95 (16%), Positives = 21/95 (22%), Gaps = 1/95 (1%)

Query: 128 GSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAP-APEPATTPTPAPASAPTPTPRSA 186
              P      PAP P  +  +  P    T           P    T + A A     +  
Sbjct: 38  ALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPG 97

Query: 187 PTPAPTRQPATHVVGGALGWTVPPNASVGYQNWAR 221
           P    +  PA       L     P           
Sbjct: 98  PEAPASAPPAAGRAVPGLYHHPVPEPDPVRVEEVS 132

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 47.1 bits (111), Expect = 5e-06
 Identities = 14/102 (13%), Positives = 22/102 (21%)

Query: 128 GSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAP 187
                       P P  S  SP   P      A   +         AP+   +       
Sbjct: 20  NGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFS 79

Query: 188 TPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGD 229
           + +   +  T          V   +    +  A      V D
Sbjct: 80  SLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVID 121

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 1/80 (1%)

Query: 126 ARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRS 185
            R   P P PS+ +P  +    +   A   +     A    P+   +       + +   
Sbjct: 27  QRPQPPPPPPSAASP-GATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSSLSNAV 85

Query: 186 APTPAPTRQPATHVVGGALG 205
             T A      +  VGG  G
Sbjct: 86  KQTTAAAAATFSEQVGGGSG 105

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 47.4 bits (112), Expect = 6e-06
 Identities = 41/217 (18%), Positives = 71/217 (32%), Gaps = 8/217 (3%)

Query: 130  SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPT-PRSAPT 188
            SP     S      G T           +P  A    P +      +   +PT P  +PT
Sbjct: 1493 SPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPT 1552

Query: 189  PAPTRQPATHVVGGALGWTVP--PNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVT 246
             +P   P +           P  P+ S    +++  +         +   +  +     T
Sbjct: 1553 -SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY---SPT 1608

Query: 247  KAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGSSTAPS 306
              +Y   + S + +  +  PT  +       Y   T P +       +      S T+PS
Sbjct: 1609 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPAYSPTSPS 1667

Query: 307  ASPPSPTATPPSTTTNPPPQSPGGGTAPPPPNSSAKS 343
             SP SP+ +P S + +P   S    +    P S + S
Sbjct: 1668 YSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYS 1704

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 49/229 (21%), Positives = 77/229 (33%), Gaps = 40/229 (17%)

Query: 125  SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 184
                +SP    SSP   P+  T SP  +PA +PT        P+ +PT +P+ +PT    
Sbjct: 1527 GEAPTSPGFGVSSPGFSPTSPTYSPT-SPAYSPTSPSYSPTSPSYSPT-SPSYSPTSPSY 1584

Query: 185  SAPTPAPTRQPATHVVGGALGWTVPPN---ASVGYQNWARNNNFSVGDILVFDYPARVHD 241
            S  +P+ +    ++           P+    S  Y                         
Sbjct: 1585 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP----------------------- 1621

Query: 242  VVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGS 301
                T  +Y   + S + +  +  PT  +       Y   T P +       +      S
Sbjct: 1622 ----TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPAYSPTSPSYSPTSPSYS 1676

Query: 302  STAPSASPPSPTATPPSTTTNPP-----PQSPGGGTAPP--PPNSSAKS 343
             T+PS SP SP+ +P S   +P      P SPG     P   P    + 
Sbjct: 1677 PTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQK 1725

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 17/81 (20%), Positives = 22/81 (27%)

Query: 139 APQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPATH 198
           AP   G+        A    PA    P     PT  P       P++   P P    AT 
Sbjct: 4   APTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATV 63

Query: 199 VVGGALGWTVPPNASVGYQNW 219
             G A       +      + 
Sbjct: 64  AAGHATLREHLRDIKAENTDA 84

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 44.6 bits (105), Expect = 4e-05
 Identities = 16/66 (24%), Positives = 21/66 (31%), Gaps = 1/66 (1%)

Query: 135 PSSPA-PQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTR 193
           P+SP  P  + +T +    PA    PA   AP     P           PR A   A   
Sbjct: 5   PTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVA 64

Query: 194 QPATHV 199
                +
Sbjct: 65  AGHATL 70

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 43.8 bits (103), Expect = 6e-05
 Identities = 10/71 (14%), Positives = 18/71 (25%)

Query: 129 SSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPT 188
            +P    ++ A     +TP+P    A           +    PTP   +    T  +   
Sbjct: 9   GTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAAGHA 68

Query: 189 PAPTRQPATHV 199
                      
Sbjct: 69  TLREHLRDIKA 79

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 15/87 (17%), Positives = 22/87 (25%)

Query: 153 PARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPATHVVGGALGWTVPPNA 212
           PA   +P               PA+   P   +APT  P  +                NA
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 213 SVGYQNWARNNNFSVGDILVFDYPARV 239
           +V   +     +         D    V
Sbjct: 62  TVAAGHATLREHLRDIKAENTDANFYV 88

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 14/81 (17%), Positives = 20/81 (24%)

Query: 131 PAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPA 190
            +P     A     +   P          AP   P+P     P   + P P   +A   A
Sbjct: 6   TSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAA 65

Query: 191 PTRQPATHVVGGALGWTVPPN 211
                  H+       T    
Sbjct: 66  GHATLREHLRDIKAENTDANF 86

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 1/74 (1%)

Query: 123 NVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPA-PAPAPEPATTPTPAPASAPTP 181
            V+A   +    P++PAP   G+ P+  P P +   P  P P        T A   A   
Sbjct: 12  GVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAAGHATLR 71

Query: 182 TPRSAPTPAPTRQP 195
                     T   
Sbjct: 72  EHLRDIKAENTDAN 85

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 43.7 bits (102), Expect = 8e-05
 Identities = 11/88 (12%), Positives = 16/88 (18%)

Query: 130 SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTP 189
               Q    A           P        +      P     P+       TP      
Sbjct: 11  QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH 70

Query: 190 APTRQPATHVVGGALGWTVPPNASVGYQ 217
               Q  T +    L      + +   Q
Sbjct: 71  QQIDQATTSMNDMHLHNVPLVDPNAYMQ 98

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 11/90 (12%), Positives = 21/90 (23%)

Query: 128 GSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAP 187
            ++P  QP+   P    +           P     P+       TPA         ++  
Sbjct: 19  NATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATT 78

Query: 188 TPAPTRQPATHVVGGALGWTVPPNASVGYQ 217
           +          +V             +G  
Sbjct: 79  SMNDMHLHNVPLVDPNAYMQPQVPVQMGTP 108

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 15/140 (10%), Positives = 27/140 (19%)

Query: 128 GSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAP 187
                 Q     P           A            P         P            
Sbjct: 52  AVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQ 111

Query: 188 TPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTK 247
              P   PA      A+G  + P   +   +        + D+ +   P  +     +  
Sbjct: 112 QQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVP 171

Query: 248 AAYDSCNSSSTISKSTNPPT 267
           +   + +     S     P 
Sbjct: 172 SELSNASPDYIRSTLNAVPK 191

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 18/94 (19%), Positives = 27/94 (28%), Gaps = 1/94 (1%)

Query: 124 VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 183
           V  +      Q ++P  QP+   P   PA A          P     P+       TP  
Sbjct: 8   VYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPP-QGAVPSMGQQQFLTPAQ 66

Query: 184 RSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQ 217
                       + + +       V PNA +  Q
Sbjct: 67  EQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQ 100

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 15/50 (30%), Positives = 18/50 (36%)

Query: 140 PQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTP 189
           P PS       PA    P P PA +        PAP +A  P   +A   
Sbjct: 92  PDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIA 141

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 40.7 bits (95), Expect = 7e-04
 Identities = 16/63 (25%), Positives = 20/63 (31%)

Query: 138 PAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPAT 197
           P P    +   P    A  PTPA +     A  P P  A+AP                  
Sbjct: 92  PDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKASLLL 151

Query: 198 HVV 200
           HV+
Sbjct: 152 HVL 154

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 6/75 (8%), Positives = 12/75 (16%)

Query: 129 SSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPT 188
            S        +      +  P       P        +        PA            
Sbjct: 2   GSSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGY 61

Query: 189 PAPTRQPATHVVGGA 203
            +        +  G+
Sbjct: 62  GSAGTSVTLQLDDGS 76

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 18/127 (14%), Positives = 33/127 (25%), Gaps = 10/127 (7%)

Query: 70  TRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSARGS 129
           T+V  S  +     S  + + +      + + G  +   S     + G            
Sbjct: 18  TQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPING----------MG 67

Query: 130 SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTP 189
            P    SSP    S S P+       T +P  +    P ++                P  
Sbjct: 68  PPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAH 127

Query: 190 APTRQPA 196
                 +
Sbjct: 128 PSGNMAS 134

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	362
1jer_A	138	Cucumber stellacyanin; electron transport, copper,	100.0
1jer_A	138	Cucumber stellacyanin; electron transport, copper,	100.0
1ws8_A	109	Mavicyanin; oxidized form, phytocyanin, cupredoxin	100.0
1x9u_A	116	Umecyanin; cupredoxin, phytocyanin, copper binding	100.0
1x9u_A	116	Umecyanin; cupredoxin, phytocyanin, copper binding	100.0
1ws8_A	109	Mavicyanin; oxidized form, phytocyanin, cupredoxin	100.0
2cbp_A	96	Cucumber basic protein; electron transport, phytoc	100.0
2cbp_A	96	Cucumber basic protein; electron transport, phytoc	100.0
1f56_A	91	Plantacyanin; cupredoxin, copper protein, beta bar	99.97
1f56_A	91	Plantacyanin; cupredoxin, copper protein, beta bar	99.96
1qhq_A	140	Protein (auracyanin); electron transfer, cupredoxi	99.16
1qhq_A	140	Protein (auracyanin); electron transfer, cupredoxi	99.09
1bxv_A	91	Plastocyanin; copper protein, electron transfer; 1	99.06
1bxv_A	91	Plastocyanin; copper protein, electron transfer; 1	98.99
2cal_A	154	Rusticyanin; iron respiratory electron transport c	98.91
2cal_A	154	Rusticyanin; iron respiratory electron transport c	98.87
1pmy_A	123	Pseudoazurin; electron transfer(cuproprotein); 1.5	98.87
1pmy_A	123	Pseudoazurin; electron transfer(cuproprotein); 1.5	98.85
1paz_A	123	Pseudoazurin precursor; electron transfer(cupropro	98.84
1paz_A	123	Pseudoazurin precursor; electron transfer(cupropro	98.82
3erx_A	123	Pseudoazurin; copper protein, high-resolution, E t	98.77
3erx_A	123	Pseudoazurin; copper protein, high-resolution, E t	98.76
2gim_A	106	Plastocyanin; beta sheet, Cu, helix, electron tran	98.76
2aan_A	139	Auracyanin A; cupredoxin fold, electron transport;	98.76
2gim_A	106	Plastocyanin; beta sheet, Cu, helix, electron tran	98.74
1plc_A	99	Plastocyanin; electron transport; 1.33A {Populus n	98.74
1b3i_A	97	PETE protein, protein (plastocyanin); electron tra	98.74
3tu6_A	127	Pseudoazurin (blue copper protein); cupredoxins, b	98.73
2aan_A	139	Auracyanin A; cupredoxin fold, electron transport;	98.72
1iuz_A	98	Plastocyanin; electron transport; 1.60A {Ulva pert	98.72
3tu6_A	127	Pseudoazurin (blue copper protein); cupredoxins, b	98.71
3ef4_A	124	Pseudoazurin, blue copper protein; electron transf	98.71
1plc_A	99	Plastocyanin; electron transport; 1.33A {Populus n	98.7
1kdj_A	102	Plastocyanin; electron transfer, photosystem, PAI-	98.66
3ef4_A	124	Pseudoazurin, blue copper protein; electron transf	98.66
1byp_A	99	Protein (plastocyanin); electron transfer, photosy	98.64
1iuz_A	98	Plastocyanin; electron transport; 1.60A {Ulva pert	98.63
1b3i_A	97	PETE protein, protein (plastocyanin); electron tra	98.63
1byp_A	99	Protein (plastocyanin); electron transfer, photosy	98.59
1kdj_A	102	Plastocyanin; electron transfer, photosystem, PAI-	98.57
2plt_A	98	Plastocyanin; electron transport; 1.50A {Chlamydom	98.54
1pcs_A	98	Plastocyanin; electron transport; 2.15A {Synechocy	98.54
2plt_A	98	Plastocyanin; electron transport; 1.50A {Chlamydom	98.47
1pcs_A	98	Plastocyanin; electron transport; 2.15A {Synechocy	98.43
3ay2_A	167	Lipid modified azurin protein; beta sandwich, bact	98.17
4hci_A	100	Cupredoxin 1; structural genomics, niaid, national	98.12
3cvb_A	105	Plastocyanin; cupredoxin, SELF assembly, copper, e	98.05
3cvb_A	105	Plastocyanin; cupredoxin, SELF assembly, copper, e	98.02
2ux6_A	122	Pseudoazurin; type-1 copper, metal-binding, redox	98.0
2ux6_A	122	Pseudoazurin; type-1 copper, metal-binding, redox	97.97
3c75_A	132	Amicyanin; copper proteins, electron transfer comp	97.97
4hci_A	100	Cupredoxin 1; structural genomics, niaid, national	97.9
1cuo_A	129	Protein (azurin ISO-2); beta barrel, periplasmic,	97.9
1cuo_A	129	Protein (azurin ISO-2); beta barrel, periplasmic,	97.89
3ay2_A	167	Lipid modified azurin protein; beta sandwich, bact	97.87
2ov0_A	105	Amicyanin; beta-sandwich, electron transport; 0.75	97.77
1id2_A	106	Amicyanin; beta barrel, type-1 blue copper protein	97.7
2iaa_C	128	Azurin; quinoprotein, tryptophan tryptophylquinone	97.65
2ov0_A	105	Amicyanin; beta-sandwich, electron transport; 0.75	97.65
2ccw_A	129	Azurin II, AZN-2; electron transport (cuproprotein	97.64
1nwp_A	128	Azurin; electron transport, cupredoxin, electron t	97.62
1nwp_A	128	Azurin; electron transport, cupredoxin, electron t	97.59
1id2_A	106	Amicyanin; beta barrel, type-1 blue copper protein	97.59
2ccw_A	129	Azurin II, AZN-2; electron transport (cuproprotein	97.53
2iaa_C	128	Azurin; quinoprotein, tryptophan tryptophylquinone	97.53
3c75_A	132	Amicyanin; copper proteins, electron transfer comp	97.51
1iko_P	178	Ephrin-B2; greek KEY, glycosylation, signaling pro	96.85
1iko_P	178	Ephrin-B2; greek KEY, glycosylation, signaling pro	96.74
2dv6_A	447	Nitrite reductase; electron transfer, reduction, d	96.72
1iby_A	112	Nitrosocyanin; RED copper, cupredoxin, beta hairpi	96.6
1iby_A	112	Nitrosocyanin; RED copper, cupredoxin, beta hairpi	96.57
1oe1_A	336	Dissimilatory copper-containing nitrite reductase;	96.5
3gdc_A	288	Multicopper oxidase; beta sandwich, plasmid, oxido	96.06
3d12_B	141	Ephrin-B3; beta propeller, protein-receptor comple	95.88
1mzy_A	333	Copper-containing nitrite reductase; mutant M182T,	95.75
1shx_A	138	Ephrin-A5; ephrin signaling, hormone-growth factor	95.54
3fsa_A	125	Azurin; copper, cupredoxin fold, metal-binding, pr	95.37
2cua_A	135	Protein (CUA); CUA center, electron transport; 1.6	95.27
2cua_A	135	Protein (CUA); CUA center, electron transport; 1.6	95.27
2x11_B	177	Ephrin-A5; receptor-signaling protein complex, dev	95.23
3czu_B	182	Ephrin-A1; ATP-binding, kinase, nucleotide-binding	95.17
3fsa_A	125	Azurin; copper, cupredoxin fold, metal-binding, pr	95.15
2x11_B	177	Ephrin-A5; receptor-signaling protein complex, dev	94.98
2vsm_B	140	Ephrin-B2; developmental protein, henipavirus, neu	94.41
3kw8_A	276	Laccase, putative copper oxidase; two-domain lacca	94.28
3czu_B	182	Ephrin-A1; ATP-binding, kinase, nucleotide-binding	94.17
3tas_A	313	Small laccase, multi-copper oxidase; two-domain la	93.63
1shx_A	138	Ephrin-A5; ephrin signaling, hormone-growth factor	93.6
3d12_B	141	Ephrin-B3; beta propeller, protein-receptor comple	93.57
2dv6_A	447	Nitrite reductase; electron transfer, reduction, d	92.71
1sdd_A	306	Coagulation factor V; copper-binding protein, cofa	92.53
2wo3_B	157	Ephrin-A2; transferase-signaling protein complex,	92.45
3cg8_A	343	Laccase; oxidoreductase, multicopper blue protein;	91.61
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	91.53
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	91.5
3t9w_A	299	Small laccase, multi-copper oxidase; two-domain co	91.43
3s8f_B	168	Cytochrome C oxidase subunit 2; complex IV, respir	91.43
2vsm_B	140	Ephrin-B2; developmental protein, henipavirus, neu	91.31
2wo3_B	157	Ephrin-A2; transferase-signaling protein complex,	90.87
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	90.48
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	89.85
3s8f_B	168	Cytochrome C oxidase subunit 2; complex IV, respir	89.62
3g5w_A	318	Multicopper oxidase type 1; two domain, laccase, n	89.61
3hei_B	132	Ephrin-A1; EPH receptor tyrosine kinase, cell memb	86.1
2r7e_B	770	Coagulation factor VIII; ceruloplasmin fold, cuppe	84.52
3hei_B	132	Ephrin-A1; EPH receptor tyrosine kinase, cell memb	83.07

>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1

Probab=100.00  E-value=1.1e-38  Score=274.49  Aligned_cols=109  Identities=40%  Similarity=0.777  Sum_probs=101.1

Q ss_pred             CceeeeeeccCCcccCCCCCCCccccccCCceecCCEEEEEeCCCCceEEEE-cccccCCCCCCCCCccCCCCCceEEc-
Q 018026          194 QPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEV-TKAAYDSCNSSSTISKSTNPPTRITL-  271 (362)
Q Consensus       194 ~~~~~~VG~~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~hsV~~v-~~~~y~~C~~~~~~~~~~~G~~~v~l-  271 (362)
                      .+++|+|||+.||+++++ ..+|++|+++++|+|||+|+|+|++++|+|+|| ++++|+.|+..+++..+++|+++|+| 
T Consensus         2 ~a~~~~VGg~~GW~~~~~-~~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~s~p~~~~~~G~~~v~L~   80 (138)
T 1jer_A            2 QSTVHIVGDNTGWSVPSS-PNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIERL   80 (138)
T ss_dssp             CCCEEETTGGGCSSCCSS-TTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSCEEEEC
T ss_pred             CceEEEECCcCcCcCCCC-ccchhhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCCCCccccccCCCeEEEec
Confidence            467899999999999753 468999999999999999999999999999999 99999999999999999999999999 


Q ss_pred             CCcccEEEEcCCCCCCCCCCeEEEEeeCCCCC
Q 018026          272 GTAGEHYFFCTFPGHCSAGQKLAVNVTGGSST  303 (362)
Q Consensus       272 ~~~G~~yFic~~~~HC~~GmKl~I~V~~~~~~  303 (362)
                      +++|++||||++++||++||||+|+|.+..+.
T Consensus        81 ~~~G~~YFicg~~gHC~~GmKl~I~V~~~~~~  112 (138)
T 1jer_A           81 DELGMHYFVCTVGTHCSNGQKLSINVVAANAT  112 (138)
T ss_dssp             CSSEEEEEECCSTTTGGGTCEEEEEEECCC--
T ss_pred             cCCcCEEEEcCCCCccccCCEEEEEEcCCCCC
Confidence            99999999999999999999999999876643

>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1

Probab=100.00  E-value=1.7e-38  Score=273.42  Aligned_cols=108  Identities=44%  Similarity=0.824  Sum_probs=100.7

Q ss_pred             cceEEEecCCCCCcCCCCCCCCCCccccCceeeeCCEEEEeecCCCccEEEe-CccccCCCCCCCCCCcCCCCCcEEEE-
Q 018026           21 AQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRV-TQSSFNACNTTSPLSRTTNSPASVTL-   98 (362)
Q Consensus        21 a~~~~~VGg~~GW~~~~~~~~~y~~Wa~~~~f~vGD~L~F~~~~~~h~V~~V-~~~~y~~C~~~~~i~~~~~G~~~v~l-   98 (362)
                      ++++|+|||+.||+++++ ..+|+.||++++|+|||+|+|+|.+++|+|+|| ++++|+.|+..+++..+++|.++|+| 
T Consensus         2 ~a~~~~VGg~~GW~~~~~-~~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~s~p~~~~~~G~~~v~L~   80 (138)
T 1jer_A            2 QSTVHIVGDNTGWSVPSS-PNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIERL   80 (138)
T ss_dssp             CCCEEETTGGGCSSCCSS-TTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSCEEEEC
T ss_pred             CceEEEECCcCcCcCCCC-ccchhhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCCCCccccccCCCeEEEec
Confidence            358999999999999753 578999999999999999999999999999999 99999999999999999999999999 


Q ss_pred             eeccceEEEcCCCCCCCCCCeeeEEeecCCC
Q 018026           99 TASGPHYFICSFPGHCLGGQKLAINVSARGS  129 (362)
Q Consensus        99 ~~~G~~yFic~~~~HC~~Gmk~~I~V~~~~~  129 (362)
                      +++|++||||++++||++||||+|+|.....
T Consensus        81 ~~~G~~YFicg~~gHC~~GmKl~I~V~~~~~  111 (138)
T 1jer_A           81 DELGMHYFVCTVGTHCSNGQKLSINVVAANA  111 (138)
T ss_dssp             CSSEEEEEECCSTTTGGGTCEEEEEEECCC-
T ss_pred             cCCcCEEEEcCCCCccccCCEEEEEEcCCCC
Confidence            9999999999999999999999999987643

>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A

Probab=100.00  E-value=9.3e-37  Score=253.01  Aligned_cols=105  Identities=41%  Similarity=0.823  Sum_probs=98.1

Q ss_pred             ceeeeeeccCCcccCCCCCCCccccccCCceecCCEEEEEeCCCCceEEEEcccccCCCCCCCCCccCCCCCceEEcCCc
Q 018026          195 PATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTA  274 (362)
Q Consensus       195 ~~~~~VG~~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~  274 (362)
                      +++|+|||+.||++++  ..+|++|+++++|+|||+|+|+|.+++|+|+||++++|+.|+..+++..+++|+++|+|+++
T Consensus         2 a~~~~VG~~~GW~~~~--~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~y~~C~~~~p~~~~~~G~~~v~L~~~   79 (109)
T 1ws8_A            2 ATVHKVGDSTGWTTLV--PYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRP   79 (109)
T ss_dssp             CCEEETTGGGCSCSSS--CCCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCSSCSEEECSSEEEEECCSS
T ss_pred             CcEEEeCCCCCccCCC--CcChhHhhcCCcCcCCCEEEEeecCCCceEEEEChHHCCcccCCCcccccCCCCEEEEECCC
Confidence            5689999999999863  35799999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccEEEEcCCCCCCCCCCeEEEEeeCCC
Q 018026          275 GEHYFFCTFPGHCSAGQKLAVNVTGGS  301 (362)
Q Consensus       275 G~~yFic~~~~HC~~GmKl~I~V~~~~  301 (362)
                      |++||||++++||++||||+|+|.+..
T Consensus        80 G~~yFic~~~gHC~~GmKl~I~V~~~~  106 (109)
T 1ws8_A           80 GTFYFLCGIPGHCQLGQKVEIKVDPGS  106 (109)
T ss_dssp             EEEEEECCSTTTTTTTCEEEEEECC--
T ss_pred             cCEEEECCCCCcccCCCEEEEEEcCCC
Confidence            999999999999999999999997654

>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A

Probab=100.00  E-value=2.3e-36  Score=253.18  Aligned_cols=105  Identities=43%  Similarity=0.815  Sum_probs=97.1

Q ss_pred             eeeeeeccCCcccCCCCCCCccccccCCceecCCEEEEEeCCCCceEEEEcccccCCCCCCCCCccCCCCCceEEcCCcc
Q 018026          196 ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAG  275 (362)
Q Consensus       196 ~~~~VG~~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G  275 (362)
                      ++|+|||+.||+++. ...+|+.|+++++|+|||+|+|+|.+++|+|+||++++|+.|+..+++..+++|+++|+|+++|
T Consensus         2 ~~~~VG~~~GW~~~~-~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G   80 (116)
T 1x9u_A            2 EDYDVGGDMEWKRPS-DPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPISHMTTPPVKIMLNTTG   80 (116)
T ss_dssp             CEEETTGGGCSSCCS-STTHHHHHHTTCCEETTCEEEECCCTTTCCEEEECHHHHHTTCCSSCSEEECSSSEEEECCSCE
T ss_pred             eEEEECCcCcCcCCC-CCcchhhccccccCcCCCEEEEEecCCCCeEEEEChhhcCccCCCCCccccCCCCeEEEECCCC
Confidence            479999999999873 3568999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEcCCCCCCCCCCeEEE-EeeCCC
Q 018026          276 EHYFFCTFPGHCSAGQKLAV-NVTGGS  301 (362)
Q Consensus       276 ~~yFic~~~~HC~~GmKl~I-~V~~~~  301 (362)
                      ++||||++++||++||||+| +|.+..
T Consensus        81 ~~yFic~~~~HC~~Gmkl~In~V~~~~  107 (116)
T 1x9u_A           81 PQYYICTVGDHCRVGQKLSINVVGAGG  107 (116)
T ss_dssp             EEEEECCSTTTTTTTCEEEEEEECC--
T ss_pred             CEEEECCCCCccccCCEEEEEEECCCC
Confidence            99999999999999999999 776544

>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A

Probab=100.00  E-value=5.6e-36  Score=250.85  Aligned_cols=104  Identities=43%  Similarity=0.846  Sum_probs=97.1

Q ss_pred             eEEEecCCCCCcCCCCCCCCCCccccCceeeeCCEEEEeecCCCccEEEeCccccCCCCCCCCCCcCCCCCcEEEEeecc
Q 018026           23 TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASG  102 (362)
Q Consensus        23 ~~~~VGg~~GW~~~~~~~~~y~~Wa~~~~f~vGD~L~F~~~~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l~~~G  102 (362)
                      ++|+|||+.||+++ ....+|+.|+++++|+|||+|+|+|.+++|+|+||++++|+.|+..+++..+++|.++|+|+++|
T Consensus         2 ~~~~VG~~~GW~~~-~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G   80 (116)
T 1x9u_A            2 EDYDVGGDMEWKRP-SDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPISHMTTPPVKIMLNTTG   80 (116)
T ss_dssp             CEEETTGGGCSSCC-SSTTHHHHHHTTCCEETTCEEEECCCTTTCCEEEECHHHHHTTCCSSCSEEECSSSEEEECCSCE
T ss_pred             eEEEECCcCcCcCC-CCCcchhhccccccCcCCCEEEEEecCCCCeEEEEChhhcCccCCCCCccccCCCCeEEEECCCC
Confidence            57999999999986 34578999999999999999999999999999999999999999999998899999999999999


Q ss_pred             ceEEEcCCCCCCCCCCeeeE-EeecC
Q 018026          103 PHYFICSFPGHCLGGQKLAI-NVSAR  127 (362)
Q Consensus       103 ~~yFic~~~~HC~~Gmk~~I-~V~~~  127 (362)
                      ++||||++++||++||||+| +|...
T Consensus        81 ~~yFic~~~~HC~~Gmkl~In~V~~~  106 (116)
T 1x9u_A           81 PQYYICTVGDHCRVGQKLSINVVGAG  106 (116)
T ss_dssp             EEEEECCSTTTTTTTCEEEEEEECC-
T ss_pred             CEEEECCCCCccccCCEEEEEEECCC
Confidence            99999999999999999999 77644

>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A

Probab=100.00  E-value=4.9e-36  Score=248.68  Aligned_cols=105  Identities=41%  Similarity=0.829  Sum_probs=98.0

Q ss_pred             ceEEEecCCCCCcCCCCCCCCCCccccCceeeeCCEEEEeecCCCccEEEeCccccCCCCCCCCCCcCCCCCcEEEEeec
Q 018026           22 QTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTAS  101 (362)
Q Consensus        22 ~~~~~VGg~~GW~~~~~~~~~y~~Wa~~~~f~vGD~L~F~~~~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l~~~  101 (362)
                      +++|+|||+.||++++  ..+|+.||++++|+|||+|+|+|.+++|+|+||++++|+.|+.++++..+++|+++|+|+++
T Consensus         2 a~~~~VG~~~GW~~~~--~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~y~~C~~~~p~~~~~~G~~~v~L~~~   79 (109)
T 1ws8_A            2 ATVHKVGDSTGWTTLV--PYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRP   79 (109)
T ss_dssp             CCEEETTGGGCSCSSS--CCCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCSSCSEEECSSEEEEECCSS
T ss_pred             CcEEEeCCCCCccCCC--CcChhHhhcCCcCcCCCEEEEeecCCCceEEEEChHHCCcccCCCcccccCCCCEEEEECCC
Confidence            3789999999999863  47899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEcCCCCCCCCCCeeeEEeecCC
Q 018026          102 GPHYFICSFPGHCLGGQKLAINVSARG  128 (362)
Q Consensus       102 G~~yFic~~~~HC~~Gmk~~I~V~~~~  128 (362)
                      |++||||++++||++||||+|+|.+..
T Consensus        80 G~~yFic~~~gHC~~GmKl~I~V~~~~  106 (109)
T 1ws8_A           80 GTFYFLCGIPGHCQLGQKVEIKVDPGS  106 (109)
T ss_dssp             EEEEEECCSTTTTTTTCEEEEEECC--
T ss_pred             cCEEEECCCCCcccCCCEEEEEEcCCC
Confidence            999999999999999999999998653

>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1

Probab=100.00  E-value=5.2e-35  Score=237.35  Aligned_cols=96  Identities=41%  Similarity=0.873  Sum_probs=91.9

Q ss_pred             eeeeeeccCCcccCCCCCCCccccccCCceecCCEEEEEeCCCCceEEEEcccccCCCCCCCCCccCCCCCceEEcCCcc
Q 018026          196 ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAG  275 (362)
Q Consensus       196 ~~~~VG~~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G  275 (362)
                      ++|+|||+.||++      +|+.|+++++|+|||+|+|+|.+++|+|+||++++|++|+..+++..+++|++.|+| ++|
T Consensus         1 ~~~~VG~~~GW~~------~y~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L-~~g   73 (96)
T 2cbp_A            1 AVYVVGGSGGWTF------NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKL-PKG   73 (96)
T ss_dssp             CEEETTGGGCSCS------SCTTTTTTCCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCCTTCEEECSSEEEEEC-CSE
T ss_pred             CEEEECCcCCCcc------ChhhhccCceEcCCCEEEEEecCCCCEEEEECHHHCCccCCCCCcccccCCCeEEEe-cCC
Confidence            3799999999986      499999999999999999999999999999999999999999999999999999999 899


Q ss_pred             cEEEEcCCCCCCCCCCeEEEEee
Q 018026          276 EHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       276 ~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      ++||||++++||++||||+|+|+
T Consensus        74 ~~yFic~~~~HC~~Gmkl~I~Vl   96 (96)
T 2cbp_A           74 QSYFICNFPGHCQSGMKIAVNAL   96 (96)
T ss_dssp             EEEEECCSTTTGGGTCEEEEEEC
T ss_pred             CEEEEcCCCCccccCCEEEEEEC
Confidence            99999999999999999999985

>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1

Probab=100.00  E-value=2.3e-34  Score=233.55  Aligned_cols=96  Identities=38%  Similarity=0.771  Sum_probs=91.7

Q ss_pred             eEEEecCCCCCcCCCCCCCCCCccccCceeeeCCEEEEeecCCCccEEEeCccccCCCCCCCCCCcCCCCCcEEEEeecc
Q 018026           23 TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASG  102 (362)
Q Consensus        23 ~~~~VGg~~GW~~~~~~~~~y~~Wa~~~~f~vGD~L~F~~~~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l~~~G  102 (362)
                      ++|+|||+.||++      +|+.||++++|+|||+|+|+|.+++|+|+||++++|+.|+.++++..+++|++.|+| ++|
T Consensus         1 ~~~~VG~~~GW~~------~y~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L-~~g   73 (96)
T 2cbp_A            1 AVYVVGGSGGWTF------NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKL-PKG   73 (96)
T ss_dssp             CEEETTGGGCSCS------SCTTTTTTCCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCCTTCEEECSSEEEEEC-CSE
T ss_pred             CEEEECCcCCCcc------ChhhhccCceEcCCCEEEEEecCCCCEEEEECHHHCCccCCCCCcccccCCCeEEEe-cCC
Confidence            3799999999996      399999999999999999999999999999999999999999999889999999999 899


Q ss_pred             ceEEEcCCCCCCCCCCeeeEEee
Q 018026          103 PHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus       103 ~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      ++||||++++||++||||+|+|+
T Consensus        74 ~~yFic~~~~HC~~Gmkl~I~Vl   96 (96)
T 2cbp_A           74 QSYFICNFPGHCQSGMKIAVNAL   96 (96)
T ss_dssp             EEEEECCSTTTGGGTCEEEEEEC
T ss_pred             CEEEEcCCCCccccCCEEEEEEC
Confidence            99999999999999999999985

>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1

Probab=99.97  E-value=1.4e-31  Score=215.03  Aligned_cols=90  Identities=39%  Similarity=0.793  Sum_probs=85.3

Q ss_pred             eeeeeccCCcccCCCCCCCccccccCCceecCCEEEEEeCCCCceEEEEcccccCCCCCCCCCccCCCCCceEEcCCccc
Q 018026          197 THVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGE  276 (362)
Q Consensus       197 ~~~VG~~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~  276 (362)
                      +|+|    ||+++       +.|+++++|+|||+|+|+|.+++|+|+||++++|++|+..+++..+++|++.|+|+ +|+
T Consensus         2 ~y~V----gW~~~-------~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L~-~g~   69 (91)
T 1f56_A            2 VYNI----GWSFN-------VNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLT-RGQ   69 (91)
T ss_dssp             EEEE----ECSSS-------CBSCTTCCBCTTCEEEEECCBTTBCEEEECHHHHHTTCCCTTCEEECSSEEEEECC-SEE
T ss_pred             EEEE----eCCCC-------CcCcCCccEeCCCEEEEEccCCCCeEEEECHHHcCCcCCCCCcccccCCCcEEEeC-CCC
Confidence            6888    89863       89999999999999999999999999999999999999999999999999999996 899


Q ss_pred             EEEEcCCCCCCCCCCeEEEEee
Q 018026          277 HYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       277 ~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      +||||++++||++||||+|+|.
T Consensus        70 ~yFic~~~~HC~~Gmkl~I~v~   91 (91)
T 1f56_A           70 NYFICSFPGHCGGGMKIAINAK   91 (91)
T ss_dssp             EEEECCSTTTTTTTCEEEEEEC
T ss_pred             eEEEcCCCCccccCCEEEEEEC
Confidence            9999999999999999999984

>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1

Probab=99.96  E-value=7.3e-31  Score=210.89  Aligned_cols=91  Identities=37%  Similarity=0.756  Sum_probs=85.5

Q ss_pred             eEEEecCCCCCcCCCCCCCCCCccccCceeeeCCEEEEeecCCCccEEEeCccccCCCCCCCCCCcCCCCCcEEEEeecc
Q 018026           23 TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASG  102 (362)
Q Consensus        23 ~~~~VGg~~GW~~~~~~~~~y~~Wa~~~~f~vGD~L~F~~~~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l~~~G  102 (362)
                      ++|+|    ||+++       +.|+++++|+|||+|+|+|.+++|+|+||++++|+.|+.++++..+++|++.|+|+ +|
T Consensus         1 ~~y~V----gW~~~-------~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L~-~g   68 (91)
T 1f56_A            1 AVYNI----GWSFN-------VNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLT-RG   68 (91)
T ss_dssp             CEEEE----ECSSS-------CBSCTTCCBCTTCEEEEECCBTTBCEEEECHHHHHTTCCCTTCEEECSSEEEEECC-SE
T ss_pred             CEEEE----eCCCC-------CcCcCCccEeCCCEEEEEccCCCCeEEEECHHHcCCcCCCCCcccccCCCcEEEeC-CC
Confidence            36888    79973       89999999999999999999999999999999999999999998899999999996 89


Q ss_pred             ceEEEcCCCCCCCCCCeeeEEee
Q 018026          103 PHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus       103 ~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      ++||||++++||++||||+|+|.
T Consensus        69 ~~yFic~~~~HC~~Gmkl~I~v~   91 (91)
T 1f56_A           69 QNYFICSFPGHCGGGMKIAINAK   91 (91)
T ss_dssp             EEEEECCSTTTTTTTCEEEEEEC
T ss_pred             CeEEEcCCCCccccCCEEEEEEC
Confidence            99999999999999999999984

>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A

Probab=99.16  E-value=4.1e-11  Score=102.17  Aligned_cols=96  Identities=20%  Similarity=0.318  Sum_probs=66.2

Q ss_pred             CCceeeeeecc-CCcccCCCCCCCccccccCCceecCCEEEEEeCC-----CCceEEEEccc-ccCCC------------
Q 018026          193 RQPATHVVGGA-LGWTVPPNASVGYQNWARNNNFSVGDILVFDYPA-----RVHDVVEVTKA-AYDSC------------  253 (362)
Q Consensus       193 a~~~~~~VG~~-~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~-----~~hsV~~v~~~-~y~~C------------  253 (362)
                      +...++.|+-. .+|.+.+          +..+++.||+|+|.|.+     ..|+++..... ++..+            
T Consensus        14 ~~~~~v~V~~~~~~~~F~P----------~~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (140)
T 1qhq_A           14 TPAQTVEVRAAPDALAFAQ----------TSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADAL   83 (140)
T ss_dssp             CCSEEEEEEBCSSSSSBSC----------SEEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGT
T ss_pred             CCCEEEEEEEeCCCceEeC----------CeEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhccccc
Confidence            34567888754 3576532          66899999999999865     57999887422 22110            


Q ss_pred             -----CCC------CCCccCCCCCceEEcCCcccEEEEcCCCCCCCCCCeEEEEee
Q 018026          254 -----NSS------STISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       254 -----~~~------~~~~~~~~G~~~v~l~~~G~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                           +..      ..+....++..+|+++++|.|||+|++.+||+.|||+.|+|.
T Consensus        84 ~~~~~~~~~~~~~t~~l~pG~~~~~~~~~~~~G~y~f~C~~~~H~~~GM~g~i~V~  139 (140)
T 1qhq_A           84 FVPPPDTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTVT  139 (140)
T ss_dssp             TCCCTTCTTEEEECCCBCTTEEEEEEEECCSSEEEEEECCSTTTTTTTCEEEEEEE
T ss_pred             ccCccccccccccceeeCCCceeEEEEEeCCCeeEEEEeCCcCHhhcCCEEEEEEc
Confidence                 000      111222333456888999999999999999999999999996

>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A

Probab=99.09  E-value=7.9e-11  Score=100.39  Aligned_cols=95  Identities=21%  Similarity=0.353  Sum_probs=64.9

Q ss_pred             cceEEEecCC-CCCcCCCCCCCCCCccccCceeeeCCEEEEeecC-----CCccEEEeCcc-ccCCC-------------
Q 018026           21 AQTRHVVGDA-LGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAA-----GNHDVTRVTQS-SFNAC-------------   80 (362)
Q Consensus        21 a~~~~~VGg~-~GW~~~~~~~~~y~~Wa~~~~f~vGD~L~F~~~~-----~~h~V~~V~~~-~y~~C-------------   80 (362)
                      +.+++.|+-. .+|.+.+          ..++++.||+|+|.|.+     ..|+++..... ++..+             
T Consensus        15 ~~~~v~V~~~~~~~~F~P----------~~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (140)
T 1qhq_A           15 PAQTVEVRAAPDALAFAQ----------TSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALF   84 (140)
T ss_dssp             CSEEEEEEBCSSSSSBSC----------SEEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTT
T ss_pred             CCEEEEEEEeCCCceEeC----------CeEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhcccccc
Confidence            3456777653 3577754          67899999999999876     57999876322 22110             


Q ss_pred             ----CCC------CCCCcCCCCCcEEEEeeccceEEEcCCCCCCCCCCeeeEEee
Q 018026           81 ----NTT------SPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        81 ----~~~------~~i~~~~~G~~~v~l~~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                          +..      ..+....++..+|+++++|.|||+|++.+||+.|||+.|+|.
T Consensus        85 ~~~~~~~~~~~~t~~l~pG~~~~~~~~~~~~G~y~f~C~~~~H~~~GM~g~i~V~  139 (140)
T 1qhq_A           85 VPPPDTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTVT  139 (140)
T ss_dssp             CCCTTCTTEEEECCCBCTTEEEEEEEECCSSEEEEEECCSTTTTTTTCEEEEEEE
T ss_pred             cCccccccccccceeeCCCceeEEEEEeCCCeeEEEEeCCcCHhhcCCEEEEEEc
Confidence                000      011112223345777889999999999999999999999996

>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A

Probab=99.06  E-value=1.7e-10  Score=90.45  Aligned_cols=86  Identities=15%  Similarity=0.159  Sum_probs=61.5

Q ss_pred             eeeeeecc-CCcccCCCCCCCccccccCCceecCCEEEEEeCC-CCceEEEEcccccCCCCCCCCCccCCCC-CceEEcC
Q 018026          196 ATHVVGGA-LGWTVPPNASVGYQNWARNNNFSVGDILVFDYPA-RVHDVVEVTKAAYDSCNSSSTISKSTNP-PTRITLG  272 (362)
Q Consensus       196 ~~~~VG~~-~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~-~~hsV~~v~~~~y~~C~~~~~~~~~~~G-~~~v~l~  272 (362)
                      .++.||++ .+|.+        +.  +.+++++||+|+|.+.. ..|+|+......+. .   . ......| ..+++++
T Consensus         3 ~~v~~~~~~~~~~f--------~P--~~i~v~~Gd~V~~~n~~~~~H~v~~~~~~~~~-~---~-~~~~~~g~~~~~~f~   67 (91)
T 1bxv_A            3 VAIKMGADNGMLAF--------EP--STIEIQAGDTVQWVNNKLAPHNVVVEGQPELS-H---K-DLAFSPGETFEATFS   67 (91)
T ss_dssp             EEEEESCTTSCSSE--------ES--SEEEECTTCEEEEEECSSCCEEEEETTCGGGC-E---E-EEECSTTCEEEEECC
T ss_pred             EEEEEecCCCccEE--------eC--CEEEECCCCEEEEEECCCCCcEEEEeCCCccC-c---c-cceeCCCCEEEEEeC
Confidence            35677764 45654        33  66899999999999864 68999865533321 0   0 1122333 4678899


Q ss_pred             CcccEEEEcCCCCCCCCCCeEEEEee
Q 018026          273 TAGEHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       273 ~~G~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      ++|.|+|+|.  .||+.||+..|.|.
T Consensus        68 ~~G~y~~~C~--~H~~~gM~g~i~V~   91 (91)
T 1bxv_A           68 EPGTYTYYCE--PHRGAGMVGKIVVQ   91 (91)
T ss_dssp             SCEEEEEECT--TTGGGTCEEEEEEC
T ss_pred             CCEEEEEEeC--CCccCCCEEEEEEC
Confidence            9999999999  89999999999984

>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A

Probab=98.99  E-value=4.3e-10  Score=88.10  Aligned_cols=85  Identities=18%  Similarity=0.185  Sum_probs=60.6

Q ss_pred             EEEecCC-CCCcCCCCCCCCCCccccCceeeeCCEEEEeecC-CCccEEEeCccccCCCCCCCCCCcCCCC-CcEEEEee
Q 018026           24 RHVVGDA-LGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAA-GNHDVTRVTQSSFNACNTTSPLSRTTNS-PASVTLTA  100 (362)
Q Consensus        24 ~~~VGg~-~GW~~~~~~~~~y~~Wa~~~~f~vGD~L~F~~~~-~~h~V~~V~~~~y~~C~~~~~i~~~~~G-~~~v~l~~  100 (362)
                      ++.||++ .+|.+.+          +.+++++||+|+|.+.. ..|+|.......+. .+   . .....| ...+++++
T Consensus         4 ~v~~~~~~~~~~f~P----------~~i~v~~Gd~V~~~n~~~~~H~v~~~~~~~~~-~~---~-~~~~~g~~~~~~f~~   68 (91)
T 1bxv_A            4 AIKMGADNGMLAFEP----------STIEIQAGDTVQWVNNKLAPHNVVVEGQPELS-HK---D-LAFSPGETFEATFSE   68 (91)
T ss_dssp             EEEESCTTSCSSEES----------SEEEECTTCEEEEEECSSCCEEEEETTCGGGC-EE---E-EECSTTCEEEEECCS
T ss_pred             EEEEecCCCccEEeC----------CEEEECCCCEEEEEECCCCCcEEEEeCCCccC-cc---c-ceeCCCCEEEEEeCC
Confidence            4567754 4566644          67899999999999874 68999865432221 00   0 112223 46788899


Q ss_pred             ccceEEEcCCCCCCCCCCeeeEEee
Q 018026          101 SGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus       101 ~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      +|.|+|+|.  .||..||+..|.|.
T Consensus        69 ~G~y~~~C~--~H~~~gM~g~i~V~   91 (91)
T 1bxv_A           69 PGTYTYYCE--PHRGAGMVGKIVVQ   91 (91)
T ss_dssp             CEEEEEECT--TTGGGTCEEEEEEC
T ss_pred             CEEEEEEeC--CCccCCCEEEEEEC
Confidence            999999999  79999999999983

>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A

Probab=98.91  E-value=9.2e-10  Score=95.91  Aligned_cols=77  Identities=18%  Similarity=0.237  Sum_probs=58.4

Q ss_pred             cCCceecCCEEEEEeCCC----CceEEEEc-ccccCCCCCCCCCc-------cCCCC---Cc--eEEcCCcccEEEEcCC
Q 018026          221 RNNNFSVGDILVFDYPAR----VHDVVEVT-KAAYDSCNSSSTIS-------KSTNP---PT--RITLGTAGEHYFFCTF  283 (362)
Q Consensus       221 ~~~~f~vGD~LvF~y~~~----~hsV~~v~-~~~y~~C~~~~~~~-------~~~~G---~~--~v~l~~~G~~yFic~~  283 (362)
                      ...++++||+|+|++.+.    .|++..++ ...|+.|.....+.       ....|   ..  +|++ ++|.|||+|..
T Consensus        61 p~i~V~~GD~V~~~~tN~~~~~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~t~tft~-~pGtY~y~C~~  139 (154)
T 2cal_A           61 PTLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHP-TAGTYYYVCQI  139 (154)
T ss_dssp             CEEEECTTCEEEEEEEECCTTCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEECC-CSEEEEEECCS
T ss_pred             CEEEEeCCCEEEEEEEcCCCCeeeEEEEeecCcchhccccccccccccccccccCCCCceEEEEEEEE-CCceEEEECCC
Confidence            347899999999999543    59999884 45787886544321       11222   23  5678 99999999999


Q ss_pred             CCCCCCCCeEEEEee
Q 018026          284 PGHCSAGQKLAVNVT  298 (362)
Q Consensus       284 ~~HC~~GmKl~I~V~  298 (362)
                      ++||+.||+..|.|.
T Consensus       140 ~gH~~~GM~G~IiV~  154 (154)
T 2cal_A          140 PGMAATGMFGKIVVK  154 (154)
T ss_dssp             TTTGGGTCEEEEEEC
T ss_pred             CCHHHCCCEEEEEEC
Confidence            999999999999984

>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A

Probab=98.87  E-value=1.9e-09  Score=93.97  Aligned_cols=76  Identities=17%  Similarity=0.307  Sum_probs=57.5

Q ss_pred             CceeeeCCEEEEeecCC----CccEEEeC-ccccCCCCCCCCC----------CcCCCCCc--EEEEeeccceEEEcCCC
Q 018026           49 NQTFTVGDTLVFNFAAG----NHDVTRVT-QSSFNACNTTSPL----------SRTTNSPA--SVTLTASGPHYFICSFP  111 (362)
Q Consensus        49 ~~~f~vGD~L~F~~~~~----~h~V~~V~-~~~y~~C~~~~~i----------~~~~~G~~--~v~l~~~G~~yFic~~~  111 (362)
                      ..++++||+|+|++.+.    .|++..++ ...|+.|.....+          .-..+|..  +|++ ++|.|||+|+..
T Consensus        62 ~i~V~~GD~V~~~~tN~~~~~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~t~tft~-~pGtY~y~C~~~  140 (154)
T 2cal_A           62 TLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHP-TAGTYYYVCQIP  140 (154)
T ss_dssp             EEEECTTCEEEEEEEECCTTCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEECC-CSEEEEEECCST
T ss_pred             EEEEeCCCEEEEEEEcCCCCeeeEEEEeecCcchhccccccccccccccccccCCCCceEEEEEEEE-CCceEEEECCCC
Confidence            57899999999999753    59999884 4577778654332          11121123  5677 999999999999


Q ss_pred             CCCCCCCeeeEEee
Q 018026          112 GHCLGGQKLAINVS  125 (362)
Q Consensus       112 ~HC~~Gmk~~I~V~  125 (362)
                      +||+.||+..|.|.
T Consensus       141 gH~~~GM~G~IiV~  154 (154)
T 2cal_A          141 GMAATGMFGKIVVK  154 (154)
T ss_dssp             TTGGGTCEEEEEEC
T ss_pred             CHHHCCCEEEEEEC
Confidence            99999999999883

>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1

Probab=98.87  E-value=5.6e-09  Score=87.67  Aligned_cols=73  Identities=16%  Similarity=0.205  Sum_probs=54.1

Q ss_pred             cCCceecCCEEEEEeCCCCceEEEEcccccCCCCCCC--CCccCCCCCceEEcCCcccEEEEcCCCCCCCCCCeEEEEee
Q 018026          221 RNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSS--TISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       221 ~~~~f~vGD~LvF~y~~~~hsV~~v~~~~y~~C~~~~--~~~~~~~G~~~v~l~~~G~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      ...++++||+|.|.+....|+|+...     .|....  ..........+++++++|.|+|+|.  .||+.||+..|+|.
T Consensus        21 ~~i~V~~GdtV~f~n~~~~H~v~~~~-----~~~p~~~~~~~~~pG~t~~~tF~~~G~y~y~C~--~H~~~gM~G~I~V~   93 (123)
T 1pmy_A           21 ALVRLKPGDSIKFLPTDKGHNVETIK-----GMAPDGADYVKTTVGQEAVVKFDKEGVYGFKCA--PHYMMGMVALVVVG   93 (123)
T ss_dssp             SEEEECTTCEEEEECSSSSCCCEECT-----TSSCTTCCCCBCCTTSCEEEECCSCEEEEEECS--TTTTTTCEEEEEES
T ss_pred             CEEEECCCCEEEEEECCCCcEEEEec-----ccCCCCccceecCCCCEEEEEeCCCeEEEEEeC--CccccCCEEEEEEc
Confidence            67899999999999987789997642     122111  1111112246789999999999998  49999999999997


Q ss_pred             CC
Q 018026          299 GG  300 (362)
Q Consensus       299 ~~  300 (362)
                      ..
T Consensus        94 ~~   95 (123)
T 1pmy_A           94 DK   95 (123)
T ss_dssp             SC
T ss_pred             CC
Confidence            53

>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1

Probab=98.85  E-value=6.2e-09  Score=87.42  Aligned_cols=73  Identities=21%  Similarity=0.299  Sum_probs=54.0

Q ss_pred             cCceeeeCCEEEEeecCCCccEEEeCccccCCCCCCCC-CCcC-CCCCcEEEEeeccceEEEcCCCCCCCCCCeeeEEee
Q 018026           48 ANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSP-LSRT-TNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~~~h~V~~V~~~~y~~C~~~~~-i~~~-~~G~~~v~l~~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      +..++++||+|+|.+....|+|+...     .|...+. .... ......++++++|.|+|+|.  .||..||+..|+|.
T Consensus        21 ~~i~V~~GdtV~f~n~~~~H~v~~~~-----~~~p~~~~~~~~~pG~t~~~tF~~~G~y~y~C~--~H~~~gM~G~I~V~   93 (123)
T 1pmy_A           21 ALVRLKPGDSIKFLPTDKGHNVETIK-----GMAPDGADYVKTTVGQEAVVKFDKEGVYGFKCA--PHYMMGMVALVVVG   93 (123)
T ss_dssp             SEEEECTTCEEEEECSSSSCCCEECT-----TSSCTTCCCCBCCTTSCEEEECCSCEEEEEECS--TTTTTTCEEEEEES
T ss_pred             CEEEECCCCEEEEEECCCCcEEEEec-----ccCCCCccceecCCCCEEEEEeCCCeEEEEEeC--CccccCCEEEEEEc
Confidence            67899999999999987799997641     2222111 1111 12236789999999999998  49999999999997


Q ss_pred             cC
Q 018026          126 AR  127 (362)
Q Consensus       126 ~~  127 (362)
                      ..
T Consensus        94 ~~   95 (123)
T 1pmy_A           94 DK   95 (123)
T ss_dssp             SC
T ss_pred             CC
Confidence            53

>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*

Probab=98.84  E-value=6.1e-09  Score=87.45  Aligned_cols=72  Identities=18%  Similarity=0.210  Sum_probs=53.5

Q ss_pred             cCCceecCCEEEEEeCCCCceEEEEcccccCCCCCCC--CCccCCCCCceEEcCCcccEEEEcCCCCCCCCCCeEEEEee
Q 018026          221 RNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSS--TISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       221 ~~~~f~vGD~LvF~y~~~~hsV~~v~~~~y~~C~~~~--~~~~~~~G~~~v~l~~~G~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      ...++++||+|.|.+....|+|+...     .|....  ..........+++++++|.|+|+|.  .||++||+..|+|.
T Consensus        21 ~~i~V~~GdtV~f~~~~~~H~v~~~~-----~~~p~~~~~~~~~pG~t~~~tF~~~G~y~y~C~--~H~~~gM~G~I~V~   93 (123)
T 1paz_A           21 AYIKANPGDTVTFIPVDKGHNVESIK-----DMIPEGAEKFKSKINENYVLTVTQPGAYLVKCT--PHYAMGMIALIAVG   93 (123)
T ss_dssp             SEEEECTTCEEEEEESSSSCCCEECT-----TCSCTTCCCCBCCTTCCEEEECCSCEEEEEECT--TTGGGTCEEEEEES
T ss_pred             CEEEECCCCEEEEEECCCCeEEEEec-----ccCCCCccceecCCCCEEEEEeCCCEEEEEEeC--CcccCCCEEEEEEc
Confidence            67899999999999987789997531     222111  1111112246789999999999998  59999999999997


Q ss_pred             C
Q 018026          299 G  299 (362)
Q Consensus       299 ~  299 (362)
                      .
T Consensus        94 ~   94 (123)
T 1paz_A           94 D   94 (123)
T ss_dssp             S
T ss_pred             C
Confidence            5

>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*

Probab=98.82  E-value=6.6e-09  Score=87.24  Aligned_cols=73  Identities=22%  Similarity=0.252  Sum_probs=53.8

Q ss_pred             cCceeeeCCEEEEeecCCCccEEEeCccccCCCCCCC--CCCcCCCCCcEEEEeeccceEEEcCCCCCCCCCCeeeEEee
Q 018026           48 ANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTS--PLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~~~h~V~~V~~~~y~~C~~~~--~i~~~~~G~~~v~l~~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      +..++++||+|+|.+....|+|+..     +.|...+  ...........++++++|.|+|+|.  .||..||+..|+|.
T Consensus        21 ~~i~V~~GdtV~f~~~~~~H~v~~~-----~~~~p~~~~~~~~~pG~t~~~tF~~~G~y~y~C~--~H~~~gM~G~I~V~   93 (123)
T 1paz_A           21 AYIKANPGDTVTFIPVDKGHNVESI-----KDMIPEGAEKFKSKINENYVLTVTQPGAYLVKCT--PHYAMGMIALIAVG   93 (123)
T ss_dssp             SEEEECTTCEEEEEESSSSCCCEEC-----TTCSCTTCCCCBCCTTCCEEEECCSCEEEEEECT--TTGGGTCEEEEEES
T ss_pred             CEEEECCCCEEEEEECCCCeEEEEe-----cccCCCCccceecCCCCEEEEEeCCCEEEEEEeC--CcccCCCEEEEEEc
Confidence            6789999999999998778999753     1222211  1111112236789999999999998  59999999999997


Q ss_pred             cC
Q 018026          126 AR  127 (362)
Q Consensus       126 ~~  127 (362)
                      ..
T Consensus        94 ~~   95 (123)
T 1paz_A           94 DS   95 (123)
T ss_dssp             SS
T ss_pred             CC
Confidence            53

>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A

Probab=98.77  E-value=1.2e-08  Score=85.74  Aligned_cols=72  Identities=19%  Similarity=0.206  Sum_probs=54.6

Q ss_pred             cCCceecCCEEEEEeCCCCceEEEEcccccCCCCCCCC--CccCCCCCceEEcCCcccEEEEcCCCCCCCCCCeEEEEee
Q 018026          221 RNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSST--ISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       221 ~~~~f~vGD~LvF~y~~~~hsV~~v~~~~y~~C~~~~~--~~~~~~G~~~v~l~~~G~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      +..++++||+|.|.+....|+|...+.     |.....  .........+++++++|.|+|+|.  .||..||+..|+|.
T Consensus        21 ~~i~V~~GdtV~f~~~~~~H~v~~~~~-----~~P~g~~~f~~~pg~t~s~TF~~pG~y~y~C~--~H~~~GM~G~I~V~   93 (123)
T 3erx_A           21 AFVRAEPGDVINFVPTDKSHNVEAIKE-----ILPEGVESFKSKINESYTLTVTEPGLYGVKCT--PHFGMGMVGLVQVG   93 (123)
T ss_dssp             SEEEECTTEEEEEEESSTTCCCEECTT-----SSCTTCCCCBCCTTCCEEEEECSCEEEEEECG--GGTTTTCEEEEEES
T ss_pred             CEEEECCCCEEEEEECCCCceEEEcCC-----cCCCCccceecCCCCEEEEEeCCCeEEEEEeC--CCCcCCcEEEEEEC
Confidence            778999999999999877899965321     222111  111123356789999999999999  79999999999997


Q ss_pred             C
Q 018026          299 G  299 (362)
Q Consensus       299 ~  299 (362)
                      .
T Consensus        94 ~   94 (123)
T 3erx_A           94 D   94 (123)
T ss_dssp             S
T ss_pred             C
Confidence            5

>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A

Probab=98.76  E-value=9.8e-09  Score=86.26  Aligned_cols=72  Identities=19%  Similarity=0.193  Sum_probs=54.5

Q ss_pred             cCceeeeCCEEEEeecCCCccEEEeCccccCCCCCCCC--CCcCCCCCcEEEEeeccceEEEcCCCCCCCCCCeeeEEee
Q 018026           48 ANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSP--LSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~~~h~V~~V~~~~y~~C~~~~~--i~~~~~G~~~v~l~~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      +..++++||+|.|.+....|+|+....     |...+.  ..........++++++|.|+|+|.  .||..||+..|.|.
T Consensus        21 ~~i~V~~GdtV~f~~~~~~H~v~~~~~-----~~P~g~~~f~~~pg~t~s~TF~~pG~y~y~C~--~H~~~GM~G~I~V~   93 (123)
T 3erx_A           21 AFVRAEPGDVINFVPTDKSHNVEAIKE-----ILPEGVESFKSKINESYTLTVTEPGLYGVKCT--PHFGMGMVGLVQVG   93 (123)
T ss_dssp             SEEEECTTEEEEEEESSTTCCCEECTT-----SSCTTCCCCBCCTTCCEEEEECSCEEEEEECG--GGTTTTCEEEEEES
T ss_pred             CEEEECCCCEEEEEECCCCceEEEcCC-----cCCCCccceecCCCCEEEEEeCCCeEEEEEeC--CCCcCCcEEEEEEC
Confidence            788999999999999887899975321     222111  111122347899999999999999  79999999999998


Q ss_pred             c
Q 018026          126 A  126 (362)
Q Consensus       126 ~  126 (362)
                      +
T Consensus        94 ~   94 (123)
T 3erx_A           94 D   94 (123)
T ss_dssp             S
T ss_pred             C
Confidence            5

>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A

Probab=98.76  E-value=1.7e-08  Score=81.26  Aligned_cols=90  Identities=22%  Similarity=0.236  Sum_probs=59.8

Q ss_pred             eeeeeecc-CCcccCCCCCCCccccccCCceecCCEEEEEeCC-CCceEEEEcccccC-----C--CCCCCCCccCCCCC
Q 018026          196 ATHVVGGA-LGWTVPPNASVGYQNWARNNNFSVGDILVFDYPA-RVHDVVEVTKAAYD-----S--CNSSSTISKSTNPP  266 (362)
Q Consensus       196 ~~~~VG~~-~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~-~~hsV~~v~~~~y~-----~--C~~~~~~~~~~~G~  266 (362)
                      .++.||.+ .++.        |+.  ...++++||+|.|.+.. ..|+|+..+....+     .  +.. +.........
T Consensus         4 ~~V~~~~~~~~~~--------F~P--~~i~v~~Gd~V~~~n~~~~~H~~~~~~~~~~~~~g~~~~~~~~-~~~~~~pG~~   72 (106)
T 2gim_A            4 YTVKLGSDKGLLV--------FEP--AKLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAKSLSH-KQLLMSPGQS   72 (106)
T ss_dssp             EEEEESCTTCCSS--------EES--SEEEECTTCEEEEEECSSSCCCBEECSSSSTTCCHHHHHHHCB-CSCCCSTTCE
T ss_pred             EEEEEEecCCcce--------EcC--CEEEECCCCEEEEEECCCCCceEEEeCCCCcccccccchhccc-cceeeCCCCE
Confidence            46777653 4565        443  66899999999998754 57999754321100     0  000 1111122234


Q ss_pred             ceEEc---CCcccEEEEcCCCCCCCCCCeEEEEee
Q 018026          267 TRITL---GTAGEHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       267 ~~v~l---~~~G~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      .++++   +++|.|+|+|.  .||++||+..|+|.
T Consensus        73 ~~~~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~  105 (106)
T 2gim_A           73 TSTTFPADAPAGEYTFYCE--PHRGAGMVGKITVA  105 (106)
T ss_dssp             EEEECCTTCCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred             EEEEEecCCCCceEEEEeC--ChhhcCcEEEEEEc
Confidence            57888   89999999999  89999999999995

>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}

Probab=98.76  E-value=2.8e-08  Score=84.41  Aligned_cols=95  Identities=20%  Similarity=0.336  Sum_probs=64.5

Q ss_pred             CCceeeeeec-cCCcccCCCCCCCccccccCCceecCCEEEEEeCCC----CceEEEEccc------------------c
Q 018026          193 RQPATHVVGG-ALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPAR----VHDVVEVTKA------------------A  249 (362)
Q Consensus       193 a~~~~~~VG~-~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~----~hsV~~v~~~------------------~  249 (362)
                      ++..++.||. ..++.        |+.  +.+++++||+|.|.|.+.    .|+++.....                  +
T Consensus        16 ~~~~~V~v~~~~~~~~--------F~p--~~i~v~~G~~V~~~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~   85 (139)
T 2aan_A           16 SGPVTIEIGSKGEELA--------FDK--TELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAAN   85 (139)
T ss_dssp             -CCEEEEEEBCTTSSS--------BSC--SEEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGT
T ss_pred             CcCEEEEEEecCCccE--------EcC--CeEEECCCCEEEEEEEeCCCCCCeeEEEeccccccchhhhhhhhccccccc
Confidence            3455777853 23555        443  668899999999988543    6999887532                  5


Q ss_pred             cCCCCCCCCC---ccCCCCC-c--eEEcCCcccEEEEcCCCCCCCCCCeEEEEee
Q 018026          250 YDSCNSSSTI---SKSTNPP-T--RITLGTAGEHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       250 y~~C~~~~~~---~~~~~G~-~--~v~l~~~G~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      |..|...+.+   .....|. .  +|+++++|.|+|+|.+.+||+ ||+..|.|.
T Consensus        86 ~~p~~~~~~~~~t~~l~pGet~~v~f~~~~pG~y~f~C~~~~H~~-GM~G~i~V~  139 (139)
T 2aan_A           86 YLPADKSNIIAESPLANGNETVEVTFTAPAAGTYLYICTVPGHYP-LMQGKLVVN  139 (139)
T ss_dssp             TCCSCCTTEEEECCCBCTTCEEEEEEECCSSEEEEEECCSTTTTT-TSEEEEEEC
T ss_pred             ccCcccccccccccccCCCCEEEEEEECCCCeEEEEEcCCCChHH-cCEEEEEEC
Confidence            6666533211   1233332 2  345568999999999999999 999999984

>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A

Probab=98.74  E-value=2.7e-08  Score=80.11  Aligned_cols=90  Identities=23%  Similarity=0.220  Sum_probs=60.1

Q ss_pred             eEEEecCC-CCCcCCCCCCCCCCccccCceeeeCCEEEEeecC-CCccEEEeCccccC-----C--CCCCCCCCcCCCCC
Q 018026           23 TRHVVGDA-LGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAA-GNHDVTRVTQSSFN-----A--CNTTSPLSRTTNSP   93 (362)
Q Consensus        23 ~~~~VGg~-~GW~~~~~~~~~y~~Wa~~~~f~vGD~L~F~~~~-~~h~V~~V~~~~y~-----~--C~~~~~i~~~~~G~   93 (362)
                      .++.||.+ .++.+.+          ...++++||+|+|.+.. ..|+|........+     .  +.. ..........
T Consensus         4 ~~V~~~~~~~~~~F~P----------~~i~v~~Gd~V~~~n~~~~~H~~~~~~~~~~~~~g~~~~~~~~-~~~~~~pG~~   72 (106)
T 2gim_A            4 YTVKLGSDKGLLVFEP----------AKLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAKSLSH-KQLLMSPGQS   72 (106)
T ss_dssp             EEEEESCTTCCSSEES----------SEEEECTTCEEEEEECSSSCCCBEECSSSSTTCCHHHHHHHCB-CSCCCSTTCE
T ss_pred             EEEEEEecCCcceEcC----------CEEEECCCCEEEEEECCCCCceEEEeCCCCcccccccchhccc-cceeeCCCCE
Confidence            45667653 4676644          67899999999998764 47999753221100     0  000 1111112233


Q ss_pred             cEEEE---eeccceEEEcCCCCCCCCCCeeeEEee
Q 018026           94 ASVTL---TASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        94 ~~v~l---~~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      ..+++   +++|.|+|+|.  .||+.||+..|.|.
T Consensus        73 ~~~~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~  105 (106)
T 2gim_A           73 TSTTFPADAPAGEYTFYCE--PHRGAGMVGKITVA  105 (106)
T ss_dssp             EEEECCTTCCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred             EEEEEecCCCCceEEEEeC--ChhhcCcEEEEEEc
Confidence            67888   88999999999  89999999999995

>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A

Probab=98.74  E-value=2e-08  Score=80.09  Aligned_cols=90  Identities=21%  Similarity=0.339  Sum_probs=60.0

Q ss_pred             eeeeecc-CCcccCCCCCCCccccccCCceecCCEEEEEeCCC-CceEEEEccc---ccCCCCC---CCCCccCCCCCce
Q 018026          197 THVVGGA-LGWTVPPNASVGYQNWARNNNFSVGDILVFDYPAR-VHDVVEVTKA---AYDSCNS---SSTISKSTNPPTR  268 (362)
Q Consensus       197 ~~~VG~~-~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~-~hsV~~v~~~---~y~~C~~---~~~~~~~~~G~~~  268 (362)
                      ++.+|++ .++.        |+.  +..++++||+|+|..... .|+|+..+..   ..+.+..   ...+........+
T Consensus         2 ~v~m~~~~~~~~--------F~P--~~i~v~~G~tV~~~n~~~~~H~v~~~~~~~p~~~~~~~~~~~~~~~~~~~G~~~~   71 (99)
T 1plc_A            2 DVLLGADDGSLA--------FVP--SEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGETFE   71 (99)
T ss_dssp             EEEESCTTCCSC--------EES--SEEEECTTCEEEEEECSSCCBCCEECTTSSCTTCCHHHHCCCTTCCBCSTTCEEE
T ss_pred             EEEEecCCCcce--------EeC--CEEEECCCCEEEEEECCCCceEEEEeCCCCcccccccccccccCccccCCCCEEE
Confidence            4667654 3354        444  678999999999988654 7999765431   1111110   0111112223457


Q ss_pred             EEcCCcccEEEEcCCCCCCCCCCeEEEEee
Q 018026          269 ITLGTAGEHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       269 v~l~~~G~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      ++++++|.|+|+|.  .||+.||+..|+|.
T Consensus        72 ~tf~~~G~y~~~C~--~H~~~gM~G~i~V~   99 (99)
T 1plc_A           72 VALSNKGEYSFYCS--PHQGAGMVGKVTVN   99 (99)
T ss_dssp             EECCSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred             EEECCCceEEEEcC--CCcccCCEEEEEEC
Confidence            89999999999999  89999999999984

>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*

Probab=98.74  E-value=3.1e-08  Score=78.59  Aligned_cols=90  Identities=22%  Similarity=0.288  Sum_probs=60.8

Q ss_pred             eeeeeecc-CCcccCCCCCCCccccccCCceecCCEEEEEeCC-CCceEEEEcccc---cCCCCCCCCCccCCCCCceEE
Q 018026          196 ATHVVGGA-LGWTVPPNASVGYQNWARNNNFSVGDILVFDYPA-RVHDVVEVTKAA---YDSCNSSSTISKSTNPPTRIT  270 (362)
Q Consensus       196 ~~~~VG~~-~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~-~~hsV~~v~~~~---y~~C~~~~~~~~~~~G~~~v~  270 (362)
                      .++.+|++ .++.+        +.  +..++++||+|+|.+.. ..|+|+..+...   .+.+.. +..........+++
T Consensus         3 ~~V~~~~~~~~~~F--------~P--~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~t   71 (97)
T 1b3i_A            3 VQIKMGTDKYAPLY--------EP--KALSISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSN-TKLAIAPGSFYSVT   71 (97)
T ss_dssp             EEEEEEETTTEEEE--------ES--SEEEECTTCEEEEEECSSCCCCBEEEECCTTSCHHHHCB-CCCCCSCSCCEEEE
T ss_pred             EEEEEeccCCccEE--------eC--CEEEECCCCEEEEEECCCCCeEEEEeCCCCccccccccc-cceecCCCCEEEEE
Confidence            46677754 44553        33  66899999999998765 479997654321   001101 11112223356788


Q ss_pred             cCCcccEEEEcCCCCCCCCCCeEEEEee
Q 018026          271 LGTAGEHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       271 l~~~G~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      ++++|.|+|+|.  .||+.||+..|.|.
T Consensus        72 f~~~G~y~y~C~--~H~~~gM~G~i~V~   97 (97)
T 1b3i_A           72 LGTPGTYSFYCT--PHRGAGMVGTITVE   97 (97)
T ss_dssp             CCSCSEEEEECS--STTTTTCEEEEEEC
T ss_pred             eCCCeEEEEEcc--ChhhcCCEEEEEEC
Confidence            999999999999  89999999999984

>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}

Probab=98.73  E-value=1.7e-08  Score=85.28  Aligned_cols=74  Identities=18%  Similarity=0.189  Sum_probs=55.2

Q ss_pred             cCCceecCCEEEEEeCCCCceEEEEcccccCCCCCCCC--CccCCCCCceEEcCCcccEEEEcCCCCCCCCCCeEEEEee
Q 018026          221 RNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSST--ISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       221 ~~~~f~vGD~LvF~y~~~~hsV~~v~~~~y~~C~~~~~--~~~~~~G~~~v~l~~~G~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      ...++++||+|.|.+....|+|...+.     +.....  ...-.....+++++++|.|+|+|.  .||..||+..|.|.
T Consensus        23 ~~i~V~~GDtVtf~n~~~~H~v~~~~~-----~~P~g~~~f~s~pGet~s~TF~~pG~y~y~C~--~H~~~GM~G~I~V~   95 (127)
T 3tu6_A           23 AVIRAQPGDTVTFVAKDKGHNSALMKG-----GAPEGAETWKGKINEEITVTLSKPGVYMYQCA--PHVGMGMIGAIVVG   95 (127)
T ss_dssp             SEEEECTTCEEEEECSSSSCCCEECTT-----CSCTTCCCCBCCTTCCCEEECCSCEEEEEECT--TTGGGTCEEEEEES
T ss_pred             CEEEECCCCEEEEEECCCCceEEEccC-----cCCCCccceecCCCCEEEEEeCCCeEEEEEeC--CCCcCCcEEEEEEC
Confidence            778999999999999877899975432     111111  111122356899999999999999  69999999999997


Q ss_pred             CCC
Q 018026          299 GGS  301 (362)
Q Consensus       299 ~~~  301 (362)
                      ...
T Consensus        96 ~~~   98 (127)
T 3tu6_A           96 EPA   98 (127)
T ss_dssp             SCT
T ss_pred             cCC
Confidence            643

>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}

Probab=98.72  E-value=8e-08  Score=81.57  Aligned_cols=94  Identities=19%  Similarity=0.337  Sum_probs=63.4

Q ss_pred             cceEEEecC-CCCCcCCCCCCCCCCccccCceeeeCCEEEEeecCC----CccEEEeCcc------------------cc
Q 018026           21 AQTRHVVGD-ALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAG----NHDVTRVTQS------------------SF   77 (362)
Q Consensus        21 a~~~~~VGg-~~GW~~~~~~~~~y~~Wa~~~~f~vGD~L~F~~~~~----~h~V~~V~~~------------------~y   77 (362)
                      +..++.||. ..++.+.+          ..+++++||+|+|.|.+.    .|+++.+...                  +|
T Consensus        17 ~~~~V~v~~~~~~~~F~p----------~~i~v~~G~~V~~~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~~   86 (139)
T 2aan_A           17 GPVTIEIGSKGEELAFDK----------TELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAANY   86 (139)
T ss_dssp             CCEEEEEEBCTTSSSBSC----------SEEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGTT
T ss_pred             cCEEEEEEecCCccEEcC----------CeEEECCCCEEEEEEEeCCCCCCeeEEEeccccccchhhhhhhhcccccccc
Confidence            335667752 23566544          678899999999988754    6999876432                  45


Q ss_pred             CCCCCCCCC---CcCCCC-CcEEEEe--eccceEEEcCCCCCCCCCCeeeEEee
Q 018026           78 NACNTTSPL---SRTTNS-PASVTLT--ASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        78 ~~C~~~~~i---~~~~~G-~~~v~l~--~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      ..|...+.+   .....| ...++++  ++|.|+|+|.+..||. ||+..|.|.
T Consensus        87 ~p~~~~~~~~~t~~l~pGet~~v~f~~~~pG~y~f~C~~~~H~~-GM~G~i~V~  139 (139)
T 2aan_A           87 LPADKSNIIAESPLANGNETVEVTFTAPAAGTYLYICTVPGHYP-LMQGKLVVN  139 (139)
T ss_dssp             CCSCCTTEEEECCCBCTTCEEEEEEECCSSEEEEEECCSTTTTT-TSEEEEEEC
T ss_pred             cCcccccccccccccCCCCEEEEEEECCCCeEEEEEcCCCChHH-cCEEEEEEC
Confidence            555432211   112223 2445554  7999999999999999 999999883

>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A

Probab=98.72  E-value=1.2e-08  Score=81.60  Aligned_cols=91  Identities=21%  Similarity=0.239  Sum_probs=60.6

Q ss_pred             eeeeeecc-CCcccCCCCCCCccccccCCceecCCEEEEEeCC-CCceEEEEccc---ccCCCCCCCCCccCCCC-CceE
Q 018026          196 ATHVVGGA-LGWTVPPNASVGYQNWARNNNFSVGDILVFDYPA-RVHDVVEVTKA---AYDSCNSSSTISKSTNP-PTRI  269 (362)
Q Consensus       196 ~~~~VG~~-~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~-~~hsV~~v~~~---~y~~C~~~~~~~~~~~G-~~~v  269 (362)
                      .++.+|++ .++.        |+.  +..++++||+|.|.+.. ..|+|+..+..   .++.+...........| ..++
T Consensus         2 ~~V~m~~~~~~~~--------F~P--~~i~v~~GdtV~~~n~~~~~H~v~~~~~~~p~g~~~~~~~~~~~~~~~g~~~~~   71 (98)
T 1iuz_A            2 QIVKLGGDDGSLA--------FVP--SKISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISYDDYLNSKGETVVR   71 (98)
T ss_dssp             EEEEESCTTSCCS--------EES--SEEEECTTCEEEEEECSSCCEEEEECTTSSCTTCCHHHHCEEEEECSTTCEEEE
T ss_pred             EEEEEecCCCCcE--------EeC--CEEEECCCCEEEEEECCCCCEEEEEeCCCCccccccccccccccccCCCCEEEE
Confidence            45666653 3455        444  67899999999998865 48999765321   22222111000122333 3578


Q ss_pred             EcCCcccEEEEcCCCCCCCCCCeEEEEee
Q 018026          270 TLGTAGEHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       270 ~l~~~G~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      +++++|.|+|+|..  ||++||+..|.|.
T Consensus        72 tf~~~G~y~y~C~~--H~~~gM~G~I~V~   98 (98)
T 1iuz_A           72 KLSTPGVYGVYCEP--HAGAGMKMTITVQ   98 (98)
T ss_dssp             ECCSCEEEEEECTT--TGGGTCEEEEEEC
T ss_pred             EcCCCEEEEEEchh--hccCCCEEEEEEC
Confidence            89999999999996  9999999999984

>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}

Probab=98.71  E-value=2.3e-08  Score=84.41  Aligned_cols=73  Identities=23%  Similarity=0.229  Sum_probs=54.7

Q ss_pred             cCceeeeCCEEEEeecCCCccEEEeCccccCCCCCCCC--CCcCCCCCcEEEEeeccceEEEcCCCCCCCCCCeeeEEee
Q 018026           48 ANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSP--LSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~~~h~V~~V~~~~y~~C~~~~~--i~~~~~G~~~v~l~~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      +..++++||+|.|.+....|+|+..+.     +.....  ..........++++++|.|+|+|.  .||..||+..|.|.
T Consensus        23 ~~i~V~~GDtVtf~n~~~~H~v~~~~~-----~~P~g~~~f~s~pGet~s~TF~~pG~y~y~C~--~H~~~GM~G~I~V~   95 (127)
T 3tu6_A           23 AVIRAQPGDTVTFVAKDKGHNSALMKG-----GAPEGAETWKGKINEEITVTLSKPGVYMYQCA--PHVGMGMIGAIVVG   95 (127)
T ss_dssp             SEEEECTTCEEEEECSSSSCCCEECTT-----CSCTTCCCCBCCTTCCCEEECCSCEEEEEECT--TTGGGTCEEEEEES
T ss_pred             CEEEECCCCEEEEEECCCCceEEEccC-----cCCCCccceecCCCCEEEEEeCCCeEEEEEeC--CCCcCCcEEEEEEC
Confidence            788999999999999877899975422     111111  011112347899999999999999  69999999999998


Q ss_pred             cC
Q 018026          126 AR  127 (362)
Q Consensus       126 ~~  127 (362)
                      +.
T Consensus        96 ~~   97 (127)
T 3tu6_A           96 EP   97 (127)
T ss_dssp             SC
T ss_pred             cC
Confidence            64

>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0

Probab=98.71  E-value=2.5e-08  Score=83.94  Aligned_cols=72  Identities=15%  Similarity=0.157  Sum_probs=54.6

Q ss_pred             cCceeeeCCEEEEeecCCCccEEEeCccccCCCCCCCCC--CcCCCCCcEEEEeeccceEEEcCCCCCCCCCCeeeEEee
Q 018026           48 ANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPL--SRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~~~h~V~~V~~~~y~~C~~~~~i--~~~~~G~~~v~l~~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      +..++++||+|.|.+....|+|+..+.     +...+..  ....+....++++++|.|+|+|.  .||..||+..|+|.
T Consensus        22 ~~i~V~~GDTV~f~n~~~~Hnv~~~~~-----~~p~g~~~~~~~pg~t~s~TF~~~G~y~Y~C~--~H~~~GM~G~I~V~   94 (124)
T 3ef4_A           22 GFVKVEAGDTVKFVPTDKSHNAESVRE-----VWPEGVAPVKGGFSKEVVFNAEKEGLYVLKCA--PHYGMGMVVLVQVG   94 (124)
T ss_dssp             SEEEECTTCEEEEECSSSSCCCEECTT-----TSCTTSCCCBCCTTCCEEEECCSSEEEEEECT--TTGGGTCEEEEEES
T ss_pred             CEEEECCCCEEEEEECCCCccEEEeCC-----cCCCCccccccCCCCEEEEEeCCCeEEEEEcC--CCCcCCCEEEEEEC
Confidence            688999999999999888999975321     2222211  11122336899999999999997  69999999999997


Q ss_pred             c
Q 018026          126 A  126 (362)
Q Consensus       126 ~  126 (362)
                      .
T Consensus        95 ~   95 (124)
T 3ef4_A           95 K   95 (124)
T ss_dssp             S
T ss_pred             C
Confidence            5

>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A

Probab=98.70  E-value=3.2e-08  Score=78.84  Aligned_cols=90  Identities=22%  Similarity=0.328  Sum_probs=59.4

Q ss_pred             EEEecCC-CCCcCCCCCCCCCCccccCceeeeCCEEEEeecCC-CccEEEeCcc---ccCCCCC---CCCCCcCCCCCcE
Q 018026           24 RHVVGDA-LGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAG-NHDVTRVTQS---SFNACNT---TSPLSRTTNSPAS   95 (362)
Q Consensus        24 ~~~VGg~-~GW~~~~~~~~~y~~Wa~~~~f~vGD~L~F~~~~~-~h~V~~V~~~---~y~~C~~---~~~i~~~~~G~~~   95 (362)
                      ++.+|++ .++.+.+          +..++++||+|+|.+..+ .|+|+..+..   +.+.+..   ...+.........
T Consensus         2 ~v~m~~~~~~~~F~P----------~~i~v~~G~tV~~~n~~~~~H~v~~~~~~~p~~~~~~~~~~~~~~~~~~~G~~~~   71 (99)
T 1plc_A            2 DVLLGADDGSLAFVP----------SEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGETFE   71 (99)
T ss_dssp             EEEESCTTCCSCEES----------SEEEECTTCEEEEEECSSCCBCCEECTTSSCTTCCHHHHCCCTTCCBCSTTCEEE
T ss_pred             EEEEecCCCcceEeC----------CEEEECCCCEEEEEECCCCceEEEEeCCCCcccccccccccccCccccCCCCEEE
Confidence            3556653 3455533          678999999999987754 7999764321   1111110   0111111223367


Q ss_pred             EEEeeccceEEEcCCCCCCCCCCeeeEEee
Q 018026           96 VTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        96 v~l~~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      ++++++|.|+|+|.  .||+.||+..|.|.
T Consensus        72 ~tf~~~G~y~~~C~--~H~~~gM~G~i~V~   99 (99)
T 1plc_A           72 VALSNKGEYSFYCS--PHQGAGMVGKVTVN   99 (99)
T ss_dssp             EECCSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred             EEECCCceEEEEcC--CCcccCCEEEEEEC
Confidence            88999999999999  79999999999983

>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A

Probab=98.66  E-value=3.1e-08  Score=79.26  Aligned_cols=90  Identities=22%  Similarity=0.272  Sum_probs=60.3

Q ss_pred             eeeeecc-CCcccCCCCCCCccccccCCceecCCEEEEEeCC-CCceEEEEcccccC----CCCCCCCC----ccCCCC-
Q 018026          197 THVVGGA-LGWTVPPNASVGYQNWARNNNFSVGDILVFDYPA-RVHDVVEVTKAAYD----SCNSSSTI----SKSTNP-  265 (362)
Q Consensus       197 ~~~VG~~-~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~-~~hsV~~v~~~~y~----~C~~~~~~----~~~~~G-  265 (362)
                      ++.||++ .++.        |+.  +..++++||+|.|.... ..|+|+..+...++    .|.....+    .....| 
T Consensus         2 ~V~~g~~~~~~~--------F~P--~~i~v~~G~tV~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~   71 (102)
T 1kdj_A            2 KVEVGDEVGNFK--------FYP--DSITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDLLSEDEP   71 (102)
T ss_dssp             EEEESCTTCCCC--------EES--SEEEECTTCCEEEEECSSSCBCCEECCCTTCCHHHHHHHHHTSCCTTCCBBTTBC
T ss_pred             EEEEecCCCccE--------EeC--CEEEECCCCEEEEEECCCCCeEEEEeCcccccccccchhhcccccccceecCCCC
Confidence            5677764 3344        444  66899999999998755 47999865433321    11100001    112223 


Q ss_pred             CceEEcCCcccEEEEcCCCCCCCCCCeEEEEee
Q 018026          266 PTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       266 ~~~v~l~~~G~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      ..+++++++|.|+|+|.  .||++||+..|.|.
T Consensus        72 ~~~~tf~~~G~y~y~C~--~H~~~gM~G~i~V~  102 (102)
T 1kdj_A           72 SFKAKVSTPGTYTFYCT--PHKSANMKGTLTVK  102 (102)
T ss_dssp             EEEECCCSCEEEEEECS--TTGGGTCEEEEEEC
T ss_pred             EEEEEeCCCeEEEEEeC--CCcccCCeEEEEEC
Confidence            45788899999999999  99999999999984

>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0

Probab=98.66  E-value=4.1e-08  Score=82.60  Aligned_cols=72  Identities=15%  Similarity=0.165  Sum_probs=54.8

Q ss_pred             cCCceecCCEEEEEeCCCCceEEEEcccccCCCCCCCCC--ccCCCCCceEEcCCcccEEEEcCCCCCCCCCCeEEEEee
Q 018026          221 RNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTI--SKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       221 ~~~~f~vGD~LvF~y~~~~hsV~~v~~~~y~~C~~~~~~--~~~~~G~~~v~l~~~G~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      ...++++||+|.|.+....|+|...+.     +......  ........+++++++|.|+|+|.  .||..||+..|+|.
T Consensus        22 ~~i~V~~GDTV~f~n~~~~Hnv~~~~~-----~~p~g~~~~~~~pg~t~s~TF~~~G~y~Y~C~--~H~~~GM~G~I~V~   94 (124)
T 3ef4_A           22 GFVKVEAGDTVKFVPTDKSHNAESVRE-----VWPEGVAPVKGGFSKEVVFNAEKEGLYVLKCA--PHYGMGMVVLVQVG   94 (124)
T ss_dssp             SEEEECTTCEEEEECSSSSCCCEECTT-----TSCTTSCCCBCCTTCCEEEECCSSEEEEEECT--TTGGGTCEEEEEES
T ss_pred             CEEEECCCCEEEEEECCCCccEEEeCC-----cCCCCccccccCCCCEEEEEeCCCeEEEEEcC--CCCcCCCEEEEEEC
Confidence            778999999999999878999975422     2222111  11122346799999999999998  79999999999997


Q ss_pred             C
Q 018026          299 G  299 (362)
Q Consensus       299 ~  299 (362)
                      .
T Consensus        95 ~   95 (124)
T 3ef4_A           95 K   95 (124)
T ss_dssp             S
T ss_pred             C
Confidence            6

>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A

Probab=98.64  E-value=5.3e-08  Score=77.50  Aligned_cols=90  Identities=21%  Similarity=0.275  Sum_probs=59.8

Q ss_pred             eeeeec-cCCcccCCCCCCCccccccCCceecCCEEEEEeCCC-CceEEEEccc---ccCCCCCC--CCCccCCCC-Cce
Q 018026          197 THVVGG-ALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPAR-VHDVVEVTKA---AYDSCNSS--STISKSTNP-PTR  268 (362)
Q Consensus       197 ~~~VG~-~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~-~hsV~~v~~~---~y~~C~~~--~~~~~~~~G-~~~  268 (362)
                      ++.||+ +.++.        |+.  +..++++||+|+|..... .|+|+..+..   .++.+...  ........| ..+
T Consensus         2 ~V~~~~~~~~~~--------F~P--~~i~v~~G~tV~~~n~~~~~H~~~~~~~~~p~g~~~~~~~~~~~~~~~~~G~~~~   71 (99)
T 1byp_A            2 EVLLGSSDGGLA--------FVP--SDLSIASGEKITFKNNAGFPHNDLFDKKEVPAGVDVTKISMPEEDLLNAPGEEYS   71 (99)
T ss_dssp             EEEESCTTSCCS--------EES--SEEEECTTEEEEEEECSSCCBCCEECTTSSCTTCCHHHHSCCTTCCBCSTTCEEE
T ss_pred             EEEEecCCCcce--------EeC--CEEEECCCCEEEEEECCCCcceEEEeCCCCccccccccccccccceeeCCCCEEE
Confidence            566764 34454        444  668999999999988653 7998765321   12222100  000112233 457


Q ss_pred             EEcCCcccEEEEcCCCCCCCCCCeEEEEee
Q 018026          269 ITLGTAGEHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       269 v~l~~~G~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      ++++++|.|+|+|.  .||++||+..|+|.
T Consensus        72 ~~f~~~G~y~~~C~--~H~~~gM~G~i~V~   99 (99)
T 1byp_A           72 VTLTEKGTYKFYCA--PHAGAGMVGKVTVN   99 (99)
T ss_dssp             EEECSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred             EEeCCCcEEEEEcC--CccccCCEEEEEEC
Confidence            88899999999999  89999999999984

>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A

Probab=98.63  E-value=2.6e-08  Score=79.49  Aligned_cols=91  Identities=16%  Similarity=0.178  Sum_probs=59.8

Q ss_pred             eEEEecC-CCCCcCCCCCCCCCCccccCceeeeCCEEEEeecC-CCccEEEeCcc---ccCCCCCCCCCCcCCCC-CcEE
Q 018026           23 TRHVVGD-ALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAA-GNHDVTRVTQS---SFNACNTTSPLSRTTNS-PASV   96 (362)
Q Consensus        23 ~~~~VGg-~~GW~~~~~~~~~y~~Wa~~~~f~vGD~L~F~~~~-~~h~V~~V~~~---~y~~C~~~~~i~~~~~G-~~~v   96 (362)
                      .++.+|+ +.++.+.+          +..++++||+|.|.+.. ..|+|+..+..   .++.+...........| ...+
T Consensus         2 ~~V~m~~~~~~~~F~P----------~~i~v~~GdtV~~~n~~~~~H~v~~~~~~~p~g~~~~~~~~~~~~~~~g~~~~~   71 (98)
T 1iuz_A            2 QIVKLGGDDGSLAFVP----------SKISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISYDDYLNSKGETVVR   71 (98)
T ss_dssp             EEEEESCTTSCCSEES----------SEEEECTTCEEEEEECSSCCEEEEECTTSSCTTCCHHHHCEEEEECSTTCEEEE
T ss_pred             EEEEEecCCCCcEEeC----------CEEEECCCCEEEEEECCCCCEEEEEeCCCCccccccccccccccccCCCCEEEE
Confidence            3456665 34566544          67899999999998775 48999764311   12221110000112223 3578


Q ss_pred             EEeeccceEEEcCCCCCCCCCCeeeEEee
Q 018026           97 TLTASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        97 ~l~~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      +++++|.|+|+|..  ||+.||+..|.|.
T Consensus        72 tf~~~G~y~y~C~~--H~~~gM~G~I~V~   98 (98)
T 1iuz_A           72 KLSTPGVYGVYCEP--HAGAGMKMTITVQ   98 (98)
T ss_dssp             ECCSCEEEEEECTT--TGGGTCEEEEEEC
T ss_pred             EcCCCEEEEEEchh--hccCCCEEEEEEC
Confidence            88999999999986  9999999999984

>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*

Probab=98.63  E-value=8.7e-08  Score=75.95  Aligned_cols=90  Identities=27%  Similarity=0.312  Sum_probs=60.2

Q ss_pred             eEEEecCC-CCCcCCCCCCCCCCccccCceeeeCCEEEEeecC-CCccEEEeCccc---cCCCCCCCCCCcCCCCCcEEE
Q 018026           23 TRHVVGDA-LGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAA-GNHDVTRVTQSS---FNACNTTSPLSRTTNSPASVT   97 (362)
Q Consensus        23 ~~~~VGg~-~GW~~~~~~~~~y~~Wa~~~~f~vGD~L~F~~~~-~~h~V~~V~~~~---y~~C~~~~~i~~~~~G~~~v~   97 (362)
                      .++.+|++ .++.+.+          +..++++||+|+|.+.. ..|++.......   .+.+.... ..........++
T Consensus         3 ~~V~~~~~~~~~~F~P----------~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~t   71 (97)
T 1b3i_A            3 VQIKMGTDKYAPLYEP----------KALSISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSNTK-LAIAPGSFYSVT   71 (97)
T ss_dssp             EEEEEEETTTEEEEES----------SEEEECTTCEEEEEECSSCCCCBEEEECCTTSCHHHHCBCC-CCCSCSCCEEEE
T ss_pred             EEEEEeccCCccEEeC----------CEEEECCCCEEEEEECCCCCeEEEEeCCCCccccccccccc-eecCCCCEEEEE
Confidence            35567653 4566544          67899999999998765 379997643221   00111111 111223346788


Q ss_pred             EeeccceEEEcCCCCCCCCCCeeeEEee
Q 018026           98 LTASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        98 l~~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      ++++|.|+|+|.  .||+.||+..|.|.
T Consensus        72 f~~~G~y~y~C~--~H~~~gM~G~i~V~   97 (97)
T 1b3i_A           72 LGTPGTYSFYCT--PHRGAGMVGTITVE   97 (97)
T ss_dssp             CCSCSEEEEECS--STTTTTCEEEEEEC
T ss_pred             eCCCeEEEEEcc--ChhhcCCEEEEEEC
Confidence            899999999999  89999999999983

>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A

Probab=98.59  E-value=1.1e-07  Score=75.58  Aligned_cols=89  Identities=22%  Similarity=0.335  Sum_probs=59.1

Q ss_pred             EEEecC-CCCCcCCCCCCCCCCccccCceeeeCCEEEEeecCC-CccEEEeCcc---ccCCCCC---CCCCCcCCCC-Cc
Q 018026           24 RHVVGD-ALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAG-NHDVTRVTQS---SFNACNT---TSPLSRTTNS-PA   94 (362)
Q Consensus        24 ~~~VGg-~~GW~~~~~~~~~y~~Wa~~~~f~vGD~L~F~~~~~-~h~V~~V~~~---~y~~C~~---~~~i~~~~~G-~~   94 (362)
                      ++.||+ +.++.+.+          +..++++||+|+|.+... .|+|...+..   .++.+..   ...+ ....| ..
T Consensus         2 ~V~~~~~~~~~~F~P----------~~i~v~~G~tV~~~n~~~~~H~~~~~~~~~p~g~~~~~~~~~~~~~-~~~~G~~~   70 (99)
T 1byp_A            2 EVLLGSSDGGLAFVP----------SDLSIASGEKITFKNNAGFPHNDLFDKKEVPAGVDVTKISMPEEDL-LNAPGEEY   70 (99)
T ss_dssp             EEEESCTTSCCSEES----------SEEEECTTEEEEEEECSSCCBCCEECTTSSCTTCCHHHHSCCTTCC-BCSTTCEE
T ss_pred             EEEEecCCCcceEeC----------CEEEECCCCEEEEEECCCCcceEEEeCCCCccccccccccccccce-eeCCCCEE
Confidence            455664 34455543          567899999999987753 7999764321   1222210   0111 12223 36


Q ss_pred             EEEEeeccceEEEcCCCCCCCCCCeeeEEee
Q 018026           95 SVTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        95 ~v~l~~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      .++++++|.|+|+|.  .||+.||+..|.|.
T Consensus        71 ~~~f~~~G~y~~~C~--~H~~~gM~G~i~V~   99 (99)
T 1byp_A           71 SVTLTEKGTYKFYCA--PHAGAGMVGKVTVN   99 (99)
T ss_dssp             EEEECSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred             EEEeCCCcEEEEEcC--CccccCCEEEEEEC
Confidence            788999999999999  79999999999983

>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A

Probab=98.57  E-value=9.4e-08  Score=76.44  Aligned_cols=90  Identities=16%  Similarity=0.262  Sum_probs=59.5

Q ss_pred             EEEecCC-CCCcCCCCCCCCCCccccCceeeeCCEEEEeecC-CCccEEEeCccccC----CCCCCCCC----CcCCCC-
Q 018026           24 RHVVGDA-LGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAA-GNHDVTRVTQSSFN----ACNTTSPL----SRTTNS-   92 (362)
Q Consensus        24 ~~~VGg~-~GW~~~~~~~~~y~~Wa~~~~f~vGD~L~F~~~~-~~h~V~~V~~~~y~----~C~~~~~i----~~~~~G-   92 (362)
                      ++.||.+ .++.+.+          ...++++||+|+|.+.. ..|+|+......++    .|.....+    .....| 
T Consensus         2 ~V~~g~~~~~~~F~P----------~~i~v~~G~tV~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~   71 (102)
T 1kdj_A            2 KVEVGDEVGNFKFYP----------DSITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDLLSEDEP   71 (102)
T ss_dssp             EEEESCTTCCCCEES----------SEEEECTTCCEEEEECSSSCBCCEECCCTTCCHHHHHHHHHTSCCTTCCBBTTBC
T ss_pred             EEEEecCCCccEEeC----------CEEEECCCCEEEEEECCCCCeEEEEeCcccccccccchhhcccccccceecCCCC
Confidence            4567753 3455543          67899999999998765 47999764322321    11110111    112222 


Q ss_pred             CcEEEEeeccceEEEcCCCCCCCCCCeeeEEee
Q 018026           93 PASVTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        93 ~~~v~l~~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      ...++++++|.|+|+|.  .||..||+..|.|.
T Consensus        72 ~~~~tf~~~G~y~y~C~--~H~~~gM~G~i~V~  102 (102)
T 1kdj_A           72 SFKAKVSTPGTYTFYCT--PHKSANMKGTLTVK  102 (102)
T ss_dssp             EEEECCCSCEEEEEECS--TTGGGTCEEEEEEC
T ss_pred             EEEEEeCCCeEEEEEeC--CCcccCCeEEEEEC
Confidence            36778899999999999  89999999999983

>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1

Probab=98.54  E-value=1e-07  Score=75.64  Aligned_cols=91  Identities=21%  Similarity=0.221  Sum_probs=60.1

Q ss_pred             eeeeeecc-CCcccCCCCCCCccccccCCceecCCEEEEEeCCC-CceEEEEccc---ccCCCCCCCCCccCCCC-CceE
Q 018026          196 ATHVVGGA-LGWTVPPNASVGYQNWARNNNFSVGDILVFDYPAR-VHDVVEVTKA---AYDSCNSSSTISKSTNP-PTRI  269 (362)
Q Consensus       196 ~~~~VG~~-~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~-~hsV~~v~~~---~y~~C~~~~~~~~~~~G-~~~v  269 (362)
                      .++.+|++ .++.        |+.  ...++++||+|.|..... .|+|+.....   +++.+...........| ..++
T Consensus         2 ~~V~m~~~~~~~~--------F~P--~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~p~~~~~~~~~~~~~~~~pG~~~~~   71 (98)
T 2plt_A            2 ATVKLGADSGALE--------FVP--KTLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDDYLNAPGETYSV   71 (98)
T ss_dssp             EEEEESCTTCCSS--------EES--SEEEECTTCEEEEEECSSCCEEEEECGGGSCTTCCHHHHCEEEEECSTTCEEEE
T ss_pred             EEEEEecCCCCce--------EeC--CEEEECCCCEEEEEECCCCceEEEEeCCCCCCccccccccccceecCCCCEEEE
Confidence            46677644 3455        443  568899999999988654 7999764321   22221100000122233 3578


Q ss_pred             EcCCcccEEEEcCCCCCCCCCCeEEEEee
Q 018026          270 TLGTAGEHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       270 ~l~~~G~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      +++++|.|+|+|.  .||+.||+..|.|.
T Consensus        72 tf~~~G~y~y~C~--~H~~~gM~G~i~V~   98 (98)
T 2plt_A           72 KLTAAGEYGYYCE--PHQGAGMVGKIIVQ   98 (98)
T ss_dssp             ECCSCEEEEEECG--GGGGGTCEEEEEEC
T ss_pred             EeCCCeEEEEEcC--CccccCCeEEEEEC
Confidence            8899999999999  79999999999984

>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A

Probab=98.54  E-value=1.5e-07  Score=74.67  Aligned_cols=91  Identities=16%  Similarity=0.156  Sum_probs=58.8

Q ss_pred             eeeeeecc-CCcccCCCCCCCccccccCCceecCCEEEEEeCC-CCceEEEEcccc--cCCCCCCCCCccCCCC-CceEE
Q 018026          196 ATHVVGGA-LGWTVPPNASVGYQNWARNNNFSVGDILVFDYPA-RVHDVVEVTKAA--YDSCNSSSTISKSTNP-PTRIT  270 (362)
Q Consensus       196 ~~~~VG~~-~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~-~~hsV~~v~~~~--y~~C~~~~~~~~~~~G-~~~v~  270 (362)
                      .++.+|.+ .++.        |+.  ...++++||+|+|.... ..|+|+..+...  -+.............| ..+++
T Consensus         3 ~~V~~~~~~~~~~--------F~P--~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~pg~~~~~~~~~~~~~~pG~~~~~t   72 (98)
T 1pcs_A            3 ATVKMGSDSGALV--------FEP--STVTIKAGEEVKWVNNKLSPHNIVFDADGVPADTAAKLSHKGLLFAAGESFTST   72 (98)
T ss_dssp             EEEEESCTTSCSS--------EES--SEEEECTTCEEEEEECSSCCEEEEECCSSSCHHHHHHHCEEEEECSTTCEEEEE
T ss_pred             EEEEEecCCCccE--------EeC--CEEEECCCCEEEEEECCCCCcEEEEeCCCCCccccccccccccccCCCCEEEEE
Confidence            45677653 4455        443  66899999999998754 479987643210  0000000000112223 45688


Q ss_pred             cCCcccEEEEcCCCCCCCCCCeEEEEee
Q 018026          271 LGTAGEHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       271 l~~~G~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      ++++|.|+|+|.  .||+.||+..|.|.
T Consensus        73 f~~~G~y~~~C~--~H~~~gM~G~i~V~   98 (98)
T 1pcs_A           73 FTEPGTYTYYCE--PHRGAGMVGKVVVE   98 (98)
T ss_dssp             CCSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred             cCCCeEEEEEcC--CccccCCeEEEEEC
Confidence            899999999999  79999999999984

>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1

Probab=98.47  E-value=1.8e-07  Score=74.17  Aligned_cols=91  Identities=24%  Similarity=0.220  Sum_probs=58.9

Q ss_pred             eEEEecCC-CCCcCCCCCCCCCCccccCceeeeCCEEEEeecCC-CccEEEeCcc---ccCCCCCCCCCCcCCCC-CcEE
Q 018026           23 TRHVVGDA-LGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAG-NHDVTRVTQS---SFNACNTTSPLSRTTNS-PASV   96 (362)
Q Consensus        23 ~~~~VGg~-~GW~~~~~~~~~y~~Wa~~~~f~vGD~L~F~~~~~-~h~V~~V~~~---~y~~C~~~~~i~~~~~G-~~~v   96 (362)
                      .++.+|++ .++.+.+          ...++++||+|+|.+..+ .|+|......   +++.+...........| ...+
T Consensus         2 ~~V~m~~~~~~~~F~P----------~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~p~~~~~~~~~~~~~~~~pG~~~~~   71 (98)
T 2plt_A            2 ATVKLGADSGALEFVP----------KTLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDDYLNAPGETYSV   71 (98)
T ss_dssp             EEEEESCTTCCSSEES----------SEEEECTTCEEEEEECSSCCEEEEECGGGSCTTCCHHHHCEEEEECSTTCEEEE
T ss_pred             EEEEEecCCCCceEeC----------CEEEECCCCEEEEEECCCCceEEEEeCCCCCCccccccccccceecCCCCEEEE
Confidence            35567643 3466544          568899999999987754 7999754211   11111000000112223 3578


Q ss_pred             EEeeccceEEEcCCCCCCCCCCeeeEEee
Q 018026           97 TLTASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        97 ~l~~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      +++++|.|+|+|.  .||+.||+..|.|.
T Consensus        72 tf~~~G~y~y~C~--~H~~~gM~G~i~V~   98 (98)
T 2plt_A           72 KLTAAGEYGYYCE--PHQGAGMVGKIIVQ   98 (98)
T ss_dssp             ECCSCEEEEEECG--GGGGGTCEEEEEEC
T ss_pred             EeCCCeEEEEEcC--CccccCCeEEEEEC
Confidence            8899999999999  79999999999983

>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A

Probab=98.43  E-value=3.3e-07  Score=72.68  Aligned_cols=91  Identities=14%  Similarity=0.158  Sum_probs=58.2

Q ss_pred             eEEEecCC-CCCcCCCCCCCCCCccccCceeeeCCEEEEeecC-CCccEEEeCccc--cCCCCCCCCCCcCCCC-CcEEE
Q 018026           23 TRHVVGDA-LGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAA-GNHDVTRVTQSS--FNACNTTSPLSRTTNS-PASVT   97 (362)
Q Consensus        23 ~~~~VGg~-~GW~~~~~~~~~y~~Wa~~~~f~vGD~L~F~~~~-~~h~V~~V~~~~--y~~C~~~~~i~~~~~G-~~~v~   97 (362)
                      .++.+|.+ .++.+.+          ...++++||+|+|.+.. ..|+|...+...  .+..+..........| ...++
T Consensus         3 ~~V~~~~~~~~~~F~P----------~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~pg~~~~~~~~~~~~~~pG~~~~~t   72 (98)
T 1pcs_A            3 ATVKMGSDSGALVFEP----------STVTIKAGEEVKWVNNKLSPHNIVFDADGVPADTAAKLSHKGLLFAAGESFTST   72 (98)
T ss_dssp             EEEEESCTTSCSSEES----------SEEEECTTCEEEEEECSSCCEEEEECCSSSCHHHHHHHCEEEEECSTTCEEEEE
T ss_pred             EEEEEecCCCccEEeC----------CEEEECCCCEEEEEECCCCCcEEEEeCCCCCccccccccccccccCCCCEEEEE
Confidence            35567653 4566544          56899999999998765 479997532110  0000000000011222 35778


Q ss_pred             EeeccceEEEcCCCCCCCCCCeeeEEee
Q 018026           98 LTASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        98 l~~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      ++++|.|+|+|.  .||..||+..|.|.
T Consensus        73 f~~~G~y~~~C~--~H~~~gM~G~i~V~   98 (98)
T 1pcs_A           73 FTEPGTYTYYCE--PHRGAGMVGKVVVE   98 (98)
T ss_dssp             CCSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred             cCCCeEEEEEcC--CccccCCeEEEEEC
Confidence            899999999999  79999999999983

>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}

Probab=98.17  E-value=2.5e-06  Score=75.23  Aligned_cols=95  Identities=16%  Similarity=0.221  Sum_probs=59.4

Q ss_pred             CCceeeeeeccCCcccCCCCCCCccccccCCce-ecCCEEEEEeCC-C-------CceEEEEcccccC------------
Q 018026          193 RQPATHVVGGALGWTVPPNASVGYQNWARNNNF-SVGDILVFDYPA-R-------VHDVVEVTKAAYD------------  251 (362)
Q Consensus       193 a~~~~~~VG~~~GW~~~~~~~~~Y~~Wa~~~~f-~vGD~LvF~y~~-~-------~hsV~~v~~~~y~------------  251 (362)
                      +...++.|+.+.++.+        +.  +.+++ +.||.|.|.|.+ +       .|+++..+..+++            
T Consensus        40 ~~~~~V~I~~~d~m~F--------~P--~~itV~kaG~~Vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~v~~~~m~~~~~  109 (167)
T 3ay2_A           40 AGNCAATVESNDNMQF--------NT--KDIQVSKACKEFTITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAADT  109 (167)
T ss_dssp             --CCEEEEEECTTSCB--------SC--SEEEEETTCSSEEEEEEECSCSCHHHHCBCCEEEEGGGHHHHHHHHGGGGGG
T ss_pred             cCceEEEEEeCCCceE--------ec--ceEEEecCCCEEEEEEEECCCCccccccceEEeccCcchhhhHHHhhhcccc
Confidence            3455777876666664        33  56778 889987777632 2       3999876544321            


Q ss_pred             ---CCCCCCCC---ccCCCCC-ceEEcC----CcccEEEEcCCCCCCCCCCeEEEEee
Q 018026          252 ---SCNSSSTI---SKSTNPP-TRITLG----TAGEHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       252 ---~C~~~~~~---~~~~~G~-~~v~l~----~~G~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                         .=+..+-+   .....|. ..|+++    ++|.|+|+|++++|=+ |||..|.|.
T Consensus       110 ~~v~~~d~~vl~~t~~l~pGet~svtf~~~~lkpG~Y~f~Ct~PgH~~-gM~G~i~V~  166 (167)
T 3ay2_A          110 DYVKPDDARVVAHTKLIGGGEESSLTLDPAKLADGDYKFACTFPGHGA-LMNGKVTLV  166 (167)
T ss_dssp             TTSCTTCTTEEEECCCBCTTCEEEEEECGGGGTTSCEEEECCSTTGGG-TSEEEEEEE
T ss_pred             ccccccccchhccceeeCCCCEEEEEEecCCCCCcEEEEEcCCCCchh-cCEEEEEEe
Confidence               10111101   1223332 345554    7899999999999998 999999985

>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A

Probab=98.12  E-value=1e-06  Score=70.44  Aligned_cols=70  Identities=14%  Similarity=0.161  Sum_probs=46.5

Q ss_pred             cCCceecCCEEEEEeCCC---CceEEEEcccccCCCCCCCCCccCCCCCceEEcCCcccEEEEcCCCCCCCCCCeEEEEe
Q 018026          221 RNNNFSVGDILVFDYPAR---VHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNV  297 (362)
Q Consensus       221 ~~~~f~vGD~LvF~y~~~---~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~HC~~GmKl~I~V  297 (362)
                      +..++++||+|.|.+.+.   .|++.. .....+.     .+....+....++.+++|.|.|+|.  .||+.||+..|.|
T Consensus        28 ~~i~v~~G~tV~~~~~n~d~~~H~~~~-~~~~~~~-----~~~pg~~~~~~~t~~~~G~Y~y~C~--~H~~~gM~G~i~V   99 (100)
T 4hci_A           28 NVITIPINESTTLLLKNKGKSEHTFTI-KKLGIDV-----VVESGKEKNITVKPKSAGTYELICR--YHLLKGMEGKVIV   99 (100)
T ss_dssp             SEEEECTTSCEEEEEEECSSSCEEEEE-GGGTEEE-----EECTTCEEEEEECCCSCEEEEEECT--TTGGGTCEEEEEE
T ss_pred             CEEEECCCCEEEEEEEcCCCceEEEEE-ecCCcce-----eecCCcceeEEEecccCceEEEECc--cccCCCCEEEEEE
Confidence            678999999999987433   377643 1111110     0001111123466789999999997  6999999999998


Q ss_pred             e
Q 018026          298 T  298 (362)
Q Consensus       298 ~  298 (362)
                      .
T Consensus       100 e  100 (100)
T 4hci_A          100 K  100 (100)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A

Probab=98.05  E-value=6.4e-06  Score=65.66  Aligned_cols=89  Identities=20%  Similarity=0.187  Sum_probs=56.9

Q ss_pred             eeeeeecc-CCcccCCCCCCCccccccCCceecCCEEEEEeCC-CCceEEEEcccccCCCCC-------CCCCccCCCC-
Q 018026          196 ATHVVGGA-LGWTVPPNASVGYQNWARNNNFSVGDILVFDYPA-RVHDVVEVTKAAYDSCNS-------SSTISKSTNP-  265 (362)
Q Consensus       196 ~~~~VG~~-~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~-~~hsV~~v~~~~y~~C~~-------~~~~~~~~~G-  265 (362)
                      .++.||.+ .+..+        ..  ...++++||+|+|.... ..|+|+.-... + .+..       .........| 
T Consensus         3 ~~V~~~~~~~~~~f--------~p--~~i~v~~Gd~V~~~N~~~~~H~v~~~~~~-~-~~~~g~~~~~~~~~~~~i~pG~   70 (105)
T 3cvb_A            3 FTVKMGADSGLFQF--------EP--ANVTVHPGDTVKWVNNKLPPHNILFDDKQ-V-PGASKELADKLSHSQLMFSPGE   70 (105)
T ss_dssp             EEEEESCTTCCSCE--------ES--SEEEECTTEEEEEEECSSCCEEEEECTTS-S-GGGCHHHHHHHCEEEEECSTTC
T ss_pred             EEEEEeecCCccEE--------eC--CEEEEcCCCEEEEEECCCCCCeEEEeCCC-C-CcccccccccccccccccCCCC
Confidence            35677653 45554        33  56789999999997643 47998754211 1 1100       0000112222 


Q ss_pred             CceEEc---CCcccEEEEcCCCCCCCCCCeEEEEee
Q 018026          266 PTRITL---GTAGEHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       266 ~~~v~l---~~~G~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      ..++++   +++|.+||+|.  .|++.||+..|.|.
T Consensus        71 ~~~~~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~  104 (105)
T 3cvb_A           71 SYEITFSSDFPAGTYTYYCA--PHRGAGMVGKITVE  104 (105)
T ss_dssp             EEEEEECTTSCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred             eEEEEEecCCCCeeEEEEeC--CchhcCCEEEEEEc
Confidence            345666   78999999999  79999999999985

>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A

Probab=98.02  E-value=1.1e-05  Score=64.28  Aligned_cols=89  Identities=20%  Similarity=0.206  Sum_probs=56.9

Q ss_pred             eEEEecCC-CCCcCCCCCCCCCCccccCceeeeCCEEEEeecC-CCccEEEeCccccCCCCC--------CCCCCcCCCC
Q 018026           23 TRHVVGDA-LGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAA-GNHDVTRVTQSSFNACNT--------TSPLSRTTNS   92 (362)
Q Consensus        23 ~~~~VGg~-~GW~~~~~~~~~y~~Wa~~~~f~vGD~L~F~~~~-~~h~V~~V~~~~y~~C~~--------~~~i~~~~~G   92 (362)
                      .++.||.+ .+..+.+          ...+++.||+|+|.... ..|+|..-.. .+ .+..        ..........
T Consensus         3 ~~V~~~~~~~~~~f~p----------~~i~v~~Gd~V~~~N~~~~~H~v~~~~~-~~-~~~~g~~~~~~~~~~~~i~pG~   70 (105)
T 3cvb_A            3 FTVKMGADSGLFQFEP----------ANVTVHPGDTVKWVNNKLPPHNILFDDK-QV-PGASKELADKLSHSQLMFSPGE   70 (105)
T ss_dssp             EEEEESCTTCCSCEES----------SEEEECTTEEEEEEECSSCCEEEEECTT-SS-GGGCHHHHHHHCEEEEECSTTC
T ss_pred             EEEEEeecCCccEEeC----------CEEEEcCCCEEEEEECCCCCCeEEEeCC-CC-CcccccccccccccccccCCCC
Confidence            35567653 4566543          56789999999997653 4799865311 11 1100        0000111122


Q ss_pred             CcEEEE---eeccceEEEcCCCCCCCCCCeeeEEee
Q 018026           93 PASVTL---TASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        93 ~~~v~l---~~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      ...+++   +++|.|||+|.  .|+..||+..|.|.
T Consensus        71 ~~~~~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~  104 (105)
T 3cvb_A           71 SYEITFSSDFPAGTYTYYCA--PHRGAGMVGKITVE  104 (105)
T ss_dssp             EEEEEECTTSCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred             eEEEEEecCCCCeeEEEEeC--CchhcCCEEEEEEc
Confidence            356777   78999999999  79999999999985

>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A

Probab=98.00  E-value=8.4e-06  Score=68.03  Aligned_cols=71  Identities=18%  Similarity=0.171  Sum_probs=51.4

Q ss_pred             cCCceecCCEEEEEeCCCCceEEEEcccccCCCCCCCC--CccCCCCCceEEcCCcccEEEEcCCCCCCCCCCeEEEEee
Q 018026          221 RNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSST--ISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       221 ~~~~f~vGD~LvF~y~~~~hsV~~v~~~~y~~C~~~~~--~~~~~~G~~~v~l~~~G~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      ...++++||+|.|......|+|+....     |.....  ..........++++++|.|+|+|..  |+.  |+..|.|.
T Consensus        21 ~~i~V~~GdtV~f~n~d~~H~v~~~~~-----~~p~~~~~~~~~~g~t~~~tF~~~G~y~y~C~~--H~~--M~G~I~V~   91 (122)
T 2ux6_A           21 ASLKVAPGDTVTFIPTDKGHNVETIKG-----MIPDGAEAFKSKINENYKVTFTAPGVYGVKCTP--HPF--MVGVVQVG   91 (122)
T ss_dssp             SEEEECTTEEEEEEESSSSCCCEECTT-----CSCTTCCCCBCCTTCCEEEEECSCEEEEEEETT--EEE--EEEEEEES
T ss_pred             CEEEECCCCEEEEEECCCCcEEEEccc-----ccCCCcceeecCCCCEEEEEeCCCEEEEEEeCC--Ccc--CEEEEEEe
Confidence            668999999999998777899976431     111111  1111123467889999999999997  888  99999997


Q ss_pred             CC
Q 018026          299 GG  300 (362)
Q Consensus       299 ~~  300 (362)
                      ..
T Consensus        92 ~~   93 (122)
T 2ux6_A           92 DA   93 (122)
T ss_dssp             SS
T ss_pred             CC
Confidence            53

>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A

Probab=97.97  E-value=1.1e-05  Score=67.41  Aligned_cols=71  Identities=23%  Similarity=0.257  Sum_probs=51.1

Q ss_pred             cCceeeeCCEEEEeecCCCccEEEeCccccCCCCCCCC--CCcCCCCCcEEEEeeccceEEEcCCCCCCCCCCeeeEEee
Q 018026           48 ANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSP--LSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~~~h~V~~V~~~~y~~C~~~~~--i~~~~~G~~~v~l~~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      ...++++||+|.|.+....|+|+...     .|.....  ..........++++++|.|+|+|..  |+.  |+..|.|.
T Consensus        21 ~~i~V~~GdtV~f~n~d~~H~v~~~~-----~~~p~~~~~~~~~~g~t~~~tF~~~G~y~y~C~~--H~~--M~G~I~V~   91 (122)
T 2ux6_A           21 ASLKVAPGDTVTFIPTDKGHNVETIK-----GMIPDGAEAFKSKINENYKVTFTAPGVYGVKCTP--HPF--MVGVVQVG   91 (122)
T ss_dssp             SEEEECTTEEEEEEESSSSCCCEECT-----TCSCTTCCCCBCCTTCCEEEEECSCEEEEEEETT--EEE--EEEEEEES
T ss_pred             CEEEECCCCEEEEEECCCCcEEEEcc-----cccCCCcceeecCCCCEEEEEeCCCEEEEEEeCC--Ccc--CEEEEEEe
Confidence            67889999999998887789997532     1211111  1111122367899999999999987  877  99999997


Q ss_pred             cC
Q 018026          126 AR  127 (362)
Q Consensus       126 ~~  127 (362)
                      ..
T Consensus        92 ~~   93 (122)
T 2ux6_A           92 DA   93 (122)
T ss_dssp             SS
T ss_pred             CC
Confidence            53

>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.97  E-value=1.1e-05  Score=68.00  Aligned_cols=67  Identities=18%  Similarity=0.239  Sum_probs=47.3

Q ss_pred             cCceeeeCCEEEEeecCC-CccEEEeCccc----cCCCCCCCCCCcCCCC-CcEEEEeeccceEEEcCCCCCCCCCCeee
Q 018026           48 ANQTFTVGDTLVFNFAAG-NHDVTRVTQSS----FNACNTTSPLSRTTNS-PASVTLTASGPHYFICSFPGHCLGGQKLA  121 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~~-~h~V~~V~~~~----y~~C~~~~~i~~~~~G-~~~v~l~~~G~~yFic~~~~HC~~Gmk~~  121 (362)
                      +..++++||+|.|..... .|+|...+...    |+     .  .....| ...++++++|.|+|+|..  |.  ||+..
T Consensus        60 ~~i~V~~GdtV~~~N~d~~~H~v~~~~~~~g~~~~~-----s--~~l~pG~t~~~tF~~~G~y~y~C~~--H~--gM~G~  128 (132)
T 3c75_A           60 PEVTIKAGETVYWVNGEVMPHNVAFKKGIVGEDAFR-----G--EMMTKDQAYAITFNEAGSYDYFCTP--HP--FMRGK  128 (132)
T ss_dssp             SEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEE-----C--CCBCTTEEEEEEECSCEEEEEECSS--CT--TCEEE
T ss_pred             CEEEECCCCEEEEEECCCCceEEEEeCCCCCccccc-----c--cccCCCCEEEEEcCCCEEEEEEeCC--Cc--CCEEE
Confidence            678899999999976543 69997533211    11     0  011222 357888999999999997  75  99999


Q ss_pred             EEee
Q 018026          122 INVS  125 (362)
Q Consensus       122 I~V~  125 (362)
                      |.|.
T Consensus       129 I~V~  132 (132)
T 3c75_A          129 VIVE  132 (132)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9883

>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A

Probab=97.90  E-value=2.4e-06  Score=68.24  Aligned_cols=67  Identities=16%  Similarity=0.226  Sum_probs=45.8

Q ss_pred             cCceeeeCCEEEEeecCC---CccEEEeCccccCCCCCCCCCCcCCCCC---cEEEEeeccceEEEcCCCCCCCCCCeee
Q 018026           48 ANQTFTVGDTLVFNFAAG---NHDVTRVTQSSFNACNTTSPLSRTTNSP---ASVTLTASGPHYFICSFPGHCLGGQKLA  121 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~~---~h~V~~V~~~~y~~C~~~~~i~~~~~G~---~~v~l~~~G~~yFic~~~~HC~~Gmk~~  121 (362)
                      +..++++||+|.|.+.+.   .|++.. .....+        .....|.   ..++.+++|.|.|+|.  .||..||+..
T Consensus        28 ~~i~v~~G~tV~~~~~n~d~~~H~~~~-~~~~~~--------~~~~pg~~~~~~~t~~~~G~Y~y~C~--~H~~~gM~G~   96 (100)
T 4hci_A           28 NVITIPINESTTLLLKNKGKSEHTFTI-KKLGID--------VVVESGKEKNITVKPKSAGTYELICR--YHLLKGMEGK   96 (100)
T ss_dssp             SEEEECTTSCEEEEEEECSSSCEEEEE-GGGTEE--------EEECTTCEEEEEECCCSCEEEEEECT--TTGGGTCEEE
T ss_pred             CEEEECCCCEEEEEEEcCCCceEEEEE-ecCCcc--------eeecCCcceeEEEecccCceEEEECc--cccCCCCEEE
Confidence            678999999999987642   376643 111111        0111122   3456679999999997  5999999999


Q ss_pred             EEee
Q 018026          122 INVS  125 (362)
Q Consensus       122 I~V~  125 (362)
                      |.|.
T Consensus        97 i~Ve  100 (100)
T 4hci_A           97 VIVK  100 (100)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9984

>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A

Probab=97.90  E-value=4.2e-05  Score=64.46  Aligned_cols=91  Identities=14%  Similarity=0.234  Sum_probs=58.0

Q ss_pred             eeeeeccCCcccCCCCCCCccccccCCceecC-CEEEEEeCC-C-------CceEEEEcccc----------------cC
Q 018026          197 THVVGGALGWTVPPNASVGYQNWARNNNFSVG-DILVFDYPA-R-------VHDVVEVTKAA----------------YD  251 (362)
Q Consensus       197 ~~~VG~~~GW~~~~~~~~~Y~~Wa~~~~f~vG-D~LvF~y~~-~-------~hsV~~v~~~~----------------y~  251 (362)
                      ++.|+.+.++.+        +.  +..+++.| |.+.|.+.+ +       .|+++..+..+                |.
T Consensus         4 ~v~i~~~d~m~F--------~p--~~i~V~~G~~~vtv~~~N~g~~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~v   73 (129)
T 1cuo_A            4 ETTVTSGDTMTY--------ST--RSISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFV   73 (129)
T ss_dssp             EEEEEECSSSCC--------SC--SEEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTS
T ss_pred             EEEEEeCCCceE--------cc--CeEEEcCCCeEEEEEEEECCCCcccccccceEEecCcchhhhHHHhhhcccccccc
Confidence            566665555654        33  66889999 987777743 2       39998775442                21


Q ss_pred             CCCCCCCC---ccCCCCC---ceEEcC---CcccEEEEcCCCCCCCCCCeEEEEee
Q 018026          252 SCNSSSTI---SKSTNPP---TRITLG---TAGEHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       252 ~C~~~~~~---~~~~~G~---~~v~l~---~~G~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      .=+..+-+   .....|.   .+|++.   ++|.|+|+|++++|=+ |||..|.|.
T Consensus        74 ~~~~~~~~~~t~~l~pGet~svtf~~~~~~~~G~Y~f~C~~pgH~~-~M~G~i~V~  128 (129)
T 1cuo_A           74 TPGDKRVIAFTPIIGGGEKTSVKFKVSALSKDEAYTYFCSYPGHFS-MMRGTLKLE  128 (129)
T ss_dssp             CTTCTTCSEECCCBCTTCEEEEEEEGGGCCTTSCEEEECCSTTCTT-TSEEEEEEE
T ss_pred             ccccccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCCchH-cCEEEEEEe
Confidence            11111111   1223332   344443   8999999999999999 899999985

>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A

Probab=97.89  E-value=9.3e-05  Score=62.32  Aligned_cols=92  Identities=13%  Similarity=0.215  Sum_probs=58.4

Q ss_pred             eEEEecCCCCCcCCCCCCCCCCccccCceeeeC-CEEEEeecCC--------CccEEEeCccc----------------c
Q 018026           23 TRHVVGDALGWIVPPNGPATYSNWAANQTFTVG-DTLVFNFAAG--------NHDVTRVTQSS----------------F   77 (362)
Q Consensus        23 ~~~~VGg~~GW~~~~~~~~~y~~Wa~~~~f~vG-D~L~F~~~~~--------~h~V~~V~~~~----------------y   77 (362)
                      .++.|+.+..+.+.+          +..+++.| |.+.|.|.+.        .|+++..+..+                |
T Consensus         3 ~~v~i~~~d~m~F~p----------~~i~V~~G~~~vtv~~~N~g~~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~   72 (129)
T 1cuo_A            3 CETTVTSGDTMTYST----------RSISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNF   72 (129)
T ss_dssp             CEEEEEECSSSCCSC----------SEEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTT
T ss_pred             EEEEEEeCCCceEcc----------CeEEEcCCCeEEEEEEEECCCCcccccccceEEecCcchhhhHHHhhhccccccc
Confidence            355666555566644          67899999 9877777542        39998764432                2


Q ss_pred             CCCCCCCCC---CcCCCCC-cEEEEe-----eccceEEEcCCCCCCCCCCeeeEEee
Q 018026           78 NACNTTSPL---SRTTNSP-ASVTLT-----ASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        78 ~~C~~~~~i---~~~~~G~-~~v~l~-----~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      ..=+..+-+   .....|. ..++++     ++|.|+|+|++++|=+ |||..|.|.
T Consensus        73 v~~~~~~~~~~t~~l~pGet~svtf~~~~~~~~G~Y~f~C~~pgH~~-~M~G~i~V~  128 (129)
T 1cuo_A           73 VTPGDKRVIAFTPIIGGGEKTSVKFKVSALSKDEAYTYFCSYPGHFS-MMRGTLKLE  128 (129)
T ss_dssp             SCTTCTTCSEECCCBCTTCEEEEEEEGGGCCTTSCEEEECCSTTCTT-TSEEEEEEE
T ss_pred             cccccccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCCchH-cCEEEEEEe
Confidence            110001111   1122332 456664     7899999999999977 999999985

>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}

Probab=97.87  E-value=2.9e-05  Score=68.34  Aligned_cols=92  Identities=14%  Similarity=0.212  Sum_probs=58.7

Q ss_pred             eEEEecCCCCCcCCCCCCCCCCccccCcee-eeCCEEEEeecCC--------CccEEEeCccccC---------------
Q 018026           23 TRHVVGDALGWIVPPNGPATYSNWAANQTF-TVGDTLVFNFAAG--------NHDVTRVTQSSFN---------------   78 (362)
Q Consensus        23 ~~~~VGg~~GW~~~~~~~~~y~~Wa~~~~f-~vGD~L~F~~~~~--------~h~V~~V~~~~y~---------------   78 (362)
                      .++.|+.++++.|.+          +..++ +.||+|.|.|.+.        .|+++..+..+++               
T Consensus        43 ~~V~I~~~d~m~F~P----------~~itV~kaG~~Vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~v~~~~m~~~~~~~v  112 (167)
T 3ay2_A           43 CAATVESNDNMQFNT----------KDIQVSKACKEFTITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAADTDYV  112 (167)
T ss_dssp             CEEEEEECTTSCBSC----------SEEEEETTCSSEEEEEEECSCSCHHHHCBCCEEEEGGGHHHHHHHHGGGGGGTTS
T ss_pred             eEEEEEeCCCceEec----------ceEEEecCCCEEEEEEEECCCCccccccceEEeccCcchhhhHHHhhhccccccc
Confidence            466777665677654          56778 7899877766532        2998875443221               


Q ss_pred             CCCCCCCC---CcCCCCC-cEEEEe----eccceEEEcCCCCCCCCCCeeeEEee
Q 018026           79 ACNTTSPL---SRTTNSP-ASVTLT----ASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        79 ~C~~~~~i---~~~~~G~-~~v~l~----~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      .=+..+-+   .....|. ..++++    ++|.|+|+|++++|=+ |||..|.|.
T Consensus       113 ~~~d~~vl~~t~~l~pGet~svtf~~~~lkpG~Y~f~Ct~PgH~~-gM~G~i~V~  166 (167)
T 3ay2_A          113 KPDDARVVAHTKLIGGGEESSLTLDPAKLADGDYKFACTFPGHGA-LMNGKVTLV  166 (167)
T ss_dssp             CTTCTTEEEECCCBCTTCEEEEEECGGGGTTSCEEEECCSTTGGG-TSEEEEEEE
T ss_pred             cccccchhccceeeCCCCEEEEEEecCCCCCcEEEEEcCCCCchh-cCEEEEEEe
Confidence            00000000   1122232 466675    7899999999999977 999999986

>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...

Probab=97.77  E-value=3.8e-05  Score=61.85  Aligned_cols=67  Identities=21%  Similarity=0.171  Sum_probs=47.5

Q ss_pred             cCCceecCCEEEEEeCCC-CceEEEEcccc----cCCCCCCCCCccCCCC-CceEEcCCcccEEEEcCCCCCCCCCCeEE
Q 018026          221 RNNNFSVGDILVFDYPAR-VHDVVEVTKAA----YDSCNSSSTISKSTNP-PTRITLGTAGEHYFFCTFPGHCSAGQKLA  294 (362)
Q Consensus       221 ~~~~f~vGD~LvF~y~~~-~hsV~~v~~~~----y~~C~~~~~~~~~~~G-~~~v~l~~~G~~yFic~~~~HC~~GmKl~  294 (362)
                      ...++++||+|.|..... .|+|...+..+    |+.+.       ...| ..+++++++|.|+|+|..  |.  ||+..
T Consensus        33 ~~i~v~~Gd~V~~~N~d~~~H~v~~~~~~~g~~~~~~~~-------~~pG~~~~~tf~~~G~y~y~C~~--H~--gM~G~  101 (105)
T 2ov0_A           33 PELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKGPM-------MKKEQAYSLTFTEAGTYDYHCTP--HP--FMRGK  101 (105)
T ss_dssp             SEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEECCC-------BCTTEEEEEEECSCEEEEEECSS--CT--TCEEE
T ss_pred             CEEEECCCCEEEEEECCCCCEEEEEcCCCCCcccccccc-------cCCCCEEEEEeCCCEEEEEEeCC--CC--CCEEE
Confidence            668999999999986544 79987543211    32221       2222 356788999999999997  64  99999


Q ss_pred             EEee
Q 018026          295 VNVT  298 (362)
Q Consensus       295 I~V~  298 (362)
                      |.|.
T Consensus       102 i~V~  105 (105)
T 2ov0_A          102 VVVE  105 (105)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9884

>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1

Probab=97.70  E-value=5.7e-05  Score=61.01  Aligned_cols=67  Identities=22%  Similarity=0.232  Sum_probs=47.7

Q ss_pred             cCCceecCCEEEEEeCCC-CceEEEEccc----ccCCCCCCCCCccCCCC-CceEEcCCcccEEEEcCCCCCCCCCCeEE
Q 018026          221 RNNNFSVGDILVFDYPAR-VHDVVEVTKA----AYDSCNSSSTISKSTNP-PTRITLGTAGEHYFFCTFPGHCSAGQKLA  294 (362)
Q Consensus       221 ~~~~f~vGD~LvF~y~~~-~hsV~~v~~~----~y~~C~~~~~~~~~~~G-~~~v~l~~~G~~yFic~~~~HC~~GmKl~  294 (362)
                      ...++++||+|.|..... .|+|+..+..    .|+.       .....| ..+++++++|.|.|+|..  |.  ||+..
T Consensus        34 ~~i~V~~G~tV~~~N~d~~~H~v~~~~~~~~~~~~~s-------~~l~~g~~~~~tf~~~G~y~~~C~~--H~--~M~G~  102 (106)
T 1id2_A           34 PEVTIKAGETVYWVNGEVMPHNVAFKKGIVGEDAFRG-------EMMTKDQAYAITFNEAGSYDYFCTP--HP--FMRGK  102 (106)
T ss_dssp             SEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEEC-------CCBCTTEEEEEEECSCEEEEEECSS--CT--TCEEE
T ss_pred             CEEEECCCCEEEEEECCCCcEEEEEeCCCCCcccccc-------cccCCCCEEEEEeCCCEEEEEEeCC--CC--CCEEE
Confidence            668999999999986543 6998654322    1211       112223 356888999999999997  87  99999


Q ss_pred             EEee
Q 018026          295 VNVT  298 (362)
Q Consensus       295 I~V~  298 (362)
                      |.|.
T Consensus       103 I~V~  106 (106)
T 1id2_A          103 VIVE  106 (106)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9984

>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*

Probab=97.65  E-value=0.00015  Score=61.03  Aligned_cols=91  Identities=22%  Similarity=0.319  Sum_probs=55.1

Q ss_pred             eeeeeccCCcccCCCCCCCccccccCCce-ecCCEEEEEeCC-C-------CceEEEEcccc----------------cC
Q 018026          197 THVVGGALGWTVPPNASVGYQNWARNNNF-SVGDILVFDYPA-R-------VHDVVEVTKAA----------------YD  251 (362)
Q Consensus       197 ~~~VG~~~GW~~~~~~~~~Y~~Wa~~~~f-~vGD~LvF~y~~-~-------~hsV~~v~~~~----------------y~  251 (362)
                      ++.|+.+.++.+        +.  +..++ +.||+|.|.|.+ +       .|+++..+..+                |.
T Consensus         3 ~v~v~~~d~m~F--------~p--~~i~V~k~G~~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~   72 (128)
T 2iaa_C            3 DVSIEGNDSMQF--------NT--KSIVVDKTCKEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYV   72 (128)
T ss_dssp             EEEEEECTTSCB--------SC--SEEEECTTCSEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTS
T ss_pred             EEEEEeCCCceE--------ec--CEEEEecCCcEEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhcccccccc
Confidence            456665556664        33  45666 679987777743 2       39998765432                21


Q ss_pred             CCCCCCCC---ccCCCCC-ceEEc--C--Cccc-EEEEcCCCCCCCCCCeEEEEee
Q 018026          252 SCNSSSTI---SKSTNPP-TRITL--G--TAGE-HYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       252 ~C~~~~~~---~~~~~G~-~~v~l--~--~~G~-~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      .=+..+-+   .....|. ..+++  .  ++|. |.|+|++++|=+ |||..|.|.
T Consensus        73 ~~~~~~~~~~t~~l~pGes~~vtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~  127 (128)
T 2iaa_C           73 KAGDERVIAHTSVIGGGETDSVTFDVSKLKEGEDYAFFCSFPGHWS-IMKGTIELG  127 (128)
T ss_dssp             CTTCTTEEEECCCBCTTCEEEEEEESSCCCTTCCEEEECCSTTCTT-TSEEEEEEC
T ss_pred             ccccchhhccceeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEe
Confidence            11111101   1223332 34444  4  6784 999999999999 999999985

>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...

Probab=97.65  E-value=8.5e-05  Score=59.76  Aligned_cols=67  Identities=21%  Similarity=0.227  Sum_probs=47.0

Q ss_pred             cCceeeeCCEEEEeecCC-CccEEEeCccc----cCCCCCCCCCCcCCCC-CcEEEEeeccceEEEcCCCCCCCCCCeee
Q 018026           48 ANQTFTVGDTLVFNFAAG-NHDVTRVTQSS----FNACNTTSPLSRTTNS-PASVTLTASGPHYFICSFPGHCLGGQKLA  121 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~~-~h~V~~V~~~~----y~~C~~~~~i~~~~~G-~~~v~l~~~G~~yFic~~~~HC~~Gmk~~  121 (362)
                      ...++++||+|.|..... .|+|......+    |+.+       ....| ...++++++|.|+|+|..  |.  ||+..
T Consensus        33 ~~i~v~~Gd~V~~~N~d~~~H~v~~~~~~~g~~~~~~~-------~~~pG~~~~~tf~~~G~y~y~C~~--H~--gM~G~  101 (105)
T 2ov0_A           33 PELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKGP-------MMKKEQAYSLTFTEAGTYDYHCTP--HP--FMRGK  101 (105)
T ss_dssp             SEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEECC-------CBCTTEEEEEEECSCEEEEEECSS--CT--TCEEE
T ss_pred             CEEEECCCCEEEEEECCCCCEEEEEcCCCCCccccccc-------ccCCCCEEEEEeCCCEEEEEEeCC--CC--CCEEE
Confidence            678999999999976644 79987532211    2211       11122 357888999999999987  54  99999


Q ss_pred             EEee
Q 018026          122 INVS  125 (362)
Q Consensus       122 I~V~  125 (362)
                      |.|.
T Consensus       102 i~V~  105 (105)
T 2ov0_A          102 VVVE  105 (105)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9883

>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A

Probab=97.64  E-value=0.00012  Score=61.61  Aligned_cols=91  Identities=18%  Similarity=0.249  Sum_probs=54.6

Q ss_pred             eeeeeccCCcccCCCCCCCccccccCCce-ecCCEEEEEeCCC--------CceEEEEcccc----------------cC
Q 018026          197 THVVGGALGWTVPPNASVGYQNWARNNNF-SVGDILVFDYPAR--------VHDVVEVTKAA----------------YD  251 (362)
Q Consensus       197 ~~~VG~~~GW~~~~~~~~~Y~~Wa~~~~f-~vGD~LvF~y~~~--------~hsV~~v~~~~----------------y~  251 (362)
                      ++.|+.+.+..+        +.  +..++ +.||.|.|.+.+.        .|+++..+..+                |.
T Consensus         4 ~v~v~~~d~m~F--------~p--~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~~   73 (129)
T 2ccw_A            4 EATVESNDAMQY--------NV--KEIVVDKSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYV   73 (129)
T ss_dssp             EEEEEECTTSCB--------SC--SEEEECTTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTS
T ss_pred             EEEEEeCCCccE--------ec--ceEEEecCCCEEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhccccccc
Confidence            566766555654        33  45566 6699877777432        39998765432                21


Q ss_pred             CCCCCCCC---ccCCCCC-ce--EEcC--Cccc-EEEEcCCCCCCCCCCeEEEEee
Q 018026          252 SCNSSSTI---SKSTNPP-TR--ITLG--TAGE-HYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       252 ~C~~~~~~---~~~~~G~-~~--v~l~--~~G~-~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      .=+..+-+   .....|. ..  |+..  ++|. |+|+|++++|=+ |||..|.|.
T Consensus        74 ~~~~~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~pgH~~-gM~G~i~V~  128 (129)
T 2ccw_A           74 KAGDTRVIAHTKVIGGGESDSVTFDVSKIAAGENYAYFCSFPGHWA-MMKGTLKLG  128 (129)
T ss_dssp             CTTCTTEEEECCCBCTTCEEEEEEEGGGSCTTCCEEEECCSTTGGG-TSEEEEEEC
T ss_pred             ccccccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCChhH-cCEEEEEEe
Confidence            11111101   1123332 33  4444  5665 999999999998 999999985

>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A

Probab=97.62  E-value=0.00013  Score=61.38  Aligned_cols=91  Identities=21%  Similarity=0.289  Sum_probs=56.0

Q ss_pred             eeeeeccCCcccCCCCCCCccccccCCce-ecCCEEEEEeCCC--------CceEEEEcccccC----------------
Q 018026          197 THVVGGALGWTVPPNASVGYQNWARNNNF-SVGDILVFDYPAR--------VHDVVEVTKAAYD----------------  251 (362)
Q Consensus       197 ~~~VG~~~GW~~~~~~~~~Y~~Wa~~~~f-~vGD~LvF~y~~~--------~hsV~~v~~~~y~----------------  251 (362)
                      ++.|+.+.++.+.        .  +..++ +.||+|.|.+.+.        .|+++..+..+++                
T Consensus         4 ~v~v~~~d~m~F~--------p--~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~~   73 (128)
T 1nwp_A            4 KVTVDSTDQMSFN--------T--KDIAIDKSCKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQYL   73 (128)
T ss_dssp             EEEEEECTTSCBS--------C--SEEEECTTCSEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTTS
T ss_pred             EEEEEeCCCccEe--------c--CEEEEecCCCEEEEEEEECCCCcccCCCceEEEccccchhhHHHHHhhcccccccc
Confidence            5667666566643        3  56778 8899887777432        3999876543221                


Q ss_pred             CCCCCCCC---ccCCCCC-ceEEc--C--Cccc-EEEEcCCCCCCCCCCeEEEEee
Q 018026          252 SCNSSSTI---SKSTNPP-TRITL--G--TAGE-HYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       252 ~C~~~~~~---~~~~~G~-~~v~l--~--~~G~-~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      .=+..+-+   .....|. ..+++  .  ++|. |+|+|++++|=+ |||..|.|.
T Consensus        74 ~~~~~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~  128 (128)
T 1nwp_A           74 KDGDARVIAHTKVIGAGEKDSVTFDVSKLAAGEKYGFFCSFPGHIS-MMKGTVTLK  128 (128)
T ss_dssp             CTTCTTEEEECCCBCTTCEEEEEEEGGGSCTTSCEEEECCSTTCGG-GSEEEEEEC
T ss_pred             ccccchhheeeeeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEC
Confidence            10100101   1223332 34444  3  5676 999999999999 999999883

>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A

Probab=97.59  E-value=0.00022  Score=60.02  Aligned_cols=92  Identities=17%  Similarity=0.253  Sum_probs=57.3

Q ss_pred             eEEEecCCCCCcCCCCCCCCCCccccCcee-eeCCEEEEeecCC--------CccEEEeCccccC---------------
Q 018026           23 TRHVVGDALGWIVPPNGPATYSNWAANQTF-TVGDTLVFNFAAG--------NHDVTRVTQSSFN---------------   78 (362)
Q Consensus        23 ~~~~VGg~~GW~~~~~~~~~y~~Wa~~~~f-~vGD~L~F~~~~~--------~h~V~~V~~~~y~---------------   78 (362)
                      .++.|+.+.++.+.+          +..++ +.||+|.|.|.+.        .|+++..+..+.+               
T Consensus         3 ~~v~v~~~d~m~F~p----------~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~   72 (128)
T 1nwp_A            3 CKVTVDSTDQMSFNT----------KDIAIDKSCKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQY   72 (128)
T ss_dssp             CEEEEEECTTSCBSC----------SEEEECTTCSEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTT
T ss_pred             EEEEEEeCCCccEec----------CEEEEecCCCEEEEEEEECCCCcccCCCceEEEccccchhhHHHHHhhccccccc
Confidence            456676665677754          56778 7899888877643        2999865433221               


Q ss_pred             -CCCCCCCC---CcCCCCC-cEEEEe----eccc-eEEEcCCCCCCCCCCeeeEEee
Q 018026           79 -ACNTTSPL---SRTTNSP-ASVTLT----ASGP-HYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        79 -~C~~~~~i---~~~~~G~-~~v~l~----~~G~-~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                       .=+...-+   .....|. ..++++    ++|. |+|+|++++|=+ |||..|.|.
T Consensus        73 ~~~~~~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~  128 (128)
T 1nwp_A           73 LKDGDARVIAHTKVIGAGEKDSVTFDVSKLAAGEKYGFFCSFPGHIS-MMKGTVTLK  128 (128)
T ss_dssp             SCTTCTTEEEECCCBCTTCEEEEEEEGGGSCTTSCEEEECCSTTCGG-GSEEEEEEC
T ss_pred             cccccchhheeeeeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEC
Confidence             00000000   1122332 456665    4676 999999999977 999999883

>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1

Probab=97.59  E-value=0.00011  Score=59.27  Aligned_cols=67  Identities=18%  Similarity=0.240  Sum_probs=47.3

Q ss_pred             cCceeeeCCEEEEeecCC-CccEEEeCccc----cCCCCCCCCCCcCCCC-CcEEEEeeccceEEEcCCCCCCCCCCeee
Q 018026           48 ANQTFTVGDTLVFNFAAG-NHDVTRVTQSS----FNACNTTSPLSRTTNS-PASVTLTASGPHYFICSFPGHCLGGQKLA  121 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~~-~h~V~~V~~~~----y~~C~~~~~i~~~~~G-~~~v~l~~~G~~yFic~~~~HC~~Gmk~~  121 (362)
                      ...++++||+|.|..... .|+|...+...    |++       .....| ...++++++|.|.|+|..  |.  ||+..
T Consensus        34 ~~i~V~~G~tV~~~N~d~~~H~v~~~~~~~~~~~~~s-------~~l~~g~~~~~tf~~~G~y~~~C~~--H~--~M~G~  102 (106)
T 1id2_A           34 PEVTIKAGETVYWVNGEVMPHNVAFKKGIVGEDAFRG-------EMMTKDQAYAITFNEAGSYDYFCTP--HP--FMRGK  102 (106)
T ss_dssp             SEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEEC-------CCBCTTEEEEEEECSCEEEEEECSS--CT--TCEEE
T ss_pred             CEEEECCCCEEEEEECCCCcEEEEEeCCCCCcccccc-------cccCCCCEEEEEeCCCEEEEEEeCC--CC--CCEEE
Confidence            678999999999976543 69986532210    111       011222 357888999999999997  76  99999


Q ss_pred             EEee
Q 018026          122 INVS  125 (362)
Q Consensus       122 I~V~  125 (362)
                      |.|.
T Consensus       103 I~V~  106 (106)
T 1id2_A          103 VIVE  106 (106)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9883

>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A

Probab=97.53  E-value=0.00019  Score=60.43  Aligned_cols=92  Identities=16%  Similarity=0.237  Sum_probs=55.4

Q ss_pred             eEEEecCCCCCcCCCCCCCCCCccccCcee-eeCCEEEEeecCC--------CccEEEeCccc----------------c
Q 018026           23 TRHVVGDALGWIVPPNGPATYSNWAANQTF-TVGDTLVFNFAAG--------NHDVTRVTQSS----------------F   77 (362)
Q Consensus        23 ~~~~VGg~~GW~~~~~~~~~y~~Wa~~~~f-~vGD~L~F~~~~~--------~h~V~~V~~~~----------------y   77 (362)
                      .++.|+.+++..+.+          +..++ +.||+|.|.|.+.        .|+++..+..+                |
T Consensus         3 ~~v~v~~~d~m~F~p----------~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~   72 (129)
T 2ccw_A            3 CEATVESNDAMQYNV----------KEIVVDKSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDY   72 (129)
T ss_dssp             SEEEEEECTTSCBSC----------SEEEECTTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTT
T ss_pred             EEEEEEeCCCccEec----------ceEEEecCCCEEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhcccccc
Confidence            456676655666644          45566 6699877777542        29998754432                2


Q ss_pred             CCCCCCCCC---CcCCCCC-cEEEEe----eccc-eEEEcCCCCCCCCCCeeeEEee
Q 018026           78 NACNTTSPL---SRTTNSP-ASVTLT----ASGP-HYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        78 ~~C~~~~~i---~~~~~G~-~~v~l~----~~G~-~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      ..=+..+-+   .....|. ..++++    ++|. |+|+|++++|=+ |||..|.|.
T Consensus        73 ~~~~~~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~pgH~~-gM~G~i~V~  128 (129)
T 2ccw_A           73 VKAGDTRVIAHTKVIGGGESDSVTFDVSKIAAGENYAYFCSFPGHWA-MMKGTLKLG  128 (129)
T ss_dssp             SCTTCTTEEEECCCBCTTCEEEEEEEGGGSCTTCCEEEECCSTTGGG-TSEEEEEEC
T ss_pred             cccccccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCChhH-cCEEEEEEe
Confidence            110000101   1122232 456665    4665 999999999977 999999985

>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*

Probab=97.53  E-value=0.00035  Score=58.71  Aligned_cols=91  Identities=20%  Similarity=0.259  Sum_probs=55.7

Q ss_pred             EEEecCCCCCcCCCCCCCCCCccccCcee-eeCCEEEEeecCC--------CccEEEeCccc----------------cC
Q 018026           24 RHVVGDALGWIVPPNGPATYSNWAANQTF-TVGDTLVFNFAAG--------NHDVTRVTQSS----------------FN   78 (362)
Q Consensus        24 ~~~VGg~~GW~~~~~~~~~y~~Wa~~~~f-~vGD~L~F~~~~~--------~h~V~~V~~~~----------------y~   78 (362)
                      ++.|+.++++.+.+          +..++ +.||+|.|.|.+.        .|+++..+..+                |.
T Consensus         3 ~v~v~~~d~m~F~p----------~~i~V~k~G~~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~   72 (128)
T 2iaa_C            3 DVSIEGNDSMQFNT----------KSIVVDKTCKEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYV   72 (128)
T ss_dssp             EEEEEECTTSCBSC----------SEEEECTTCSEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTS
T ss_pred             EEEEEeCCCceEec----------CEEEEecCCcEEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhcccccccc
Confidence            45566555677654          45666 6699887777643        29997654332                21


Q ss_pred             CCCCCCCC---CcCCCC-CcEEEEe----eccc-eEEEcCCCCCCCCCCeeeEEee
Q 018026           79 ACNTTSPL---SRTTNS-PASVTLT----ASGP-HYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        79 ~C~~~~~i---~~~~~G-~~~v~l~----~~G~-~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      .=+..+-+   .....| ...++++    ++|. |.|+|++++|=+ |||..|.|.
T Consensus        73 ~~~~~~~~~~t~~l~pGes~~vtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~  127 (128)
T 2iaa_C           73 KAGDERVIAHTSVIGGGETDSVTFDVSKLKEGEDYAFFCSFPGHWS-IMKGTIELG  127 (128)
T ss_dssp             CTTCTTEEEECCCBCTTCEEEEEEESSCCCTTCCEEEECCSTTCTT-TSEEEEEEC
T ss_pred             ccccchhhccceeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEe
Confidence            10000101   112233 2456665    6784 999999999977 999999985

>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.51  E-value=0.00014  Score=61.18  Aligned_cols=67  Identities=22%  Similarity=0.232  Sum_probs=47.8

Q ss_pred             cCCceecCCEEEEEeCCC-CceEEEEccc----ccCCCCCCCCCccCCCC-CceEEcCCcccEEEEcCCCCCCCCCCeEE
Q 018026          221 RNNNFSVGDILVFDYPAR-VHDVVEVTKA----AYDSCNSSSTISKSTNP-PTRITLGTAGEHYFFCTFPGHCSAGQKLA  294 (362)
Q Consensus       221 ~~~~f~vGD~LvF~y~~~-~hsV~~v~~~----~y~~C~~~~~~~~~~~G-~~~v~l~~~G~~yFic~~~~HC~~GmKl~  294 (362)
                      +..++++||+|.|..... .|+|+..+..    .|+.       .....| ..+++++++|.|+|+|..  |.  ||+..
T Consensus        60 ~~i~V~~GdtV~~~N~d~~~H~v~~~~~~~g~~~~~s-------~~l~pG~t~~~tF~~~G~y~y~C~~--H~--gM~G~  128 (132)
T 3c75_A           60 PEVTIKAGETVYWVNGEVMPHNVAFKKGIVGEDAFRG-------EMMTKDQAYAITFNEAGSYDYFCTP--HP--FMRGK  128 (132)
T ss_dssp             SEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEEC-------CCBCTTEEEEEEECSCEEEEEECSS--CT--TCEEE
T ss_pred             CEEEECCCCEEEEEECCCCceEEEEeCCCCCcccccc-------cccCCCCEEEEEcCCCEEEEEEeCC--Cc--CCEEE
Confidence            668999999999986543 6998754322    1211       112223 356788999999999997  76  99999


Q ss_pred             EEee
Q 018026          295 VNVT  298 (362)
Q Consensus       295 I~V~  298 (362)
                      |.|.
T Consensus       129 I~V~  132 (132)
T 3c75_A          129 VIVE  132 (132)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9984

>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5

Probab=96.85  E-value=0.00039  Score=61.58  Aligned_cols=78  Identities=17%  Similarity=0.256  Sum_probs=52.3

Q ss_pred             eeeeCCEEEE---eecCC------CccEEEeCccccCCCCCCCCCC-cC----CCCCcEEEEe-------------ecc-
Q 018026           51 TFTVGDTLVF---NFAAG------NHDVTRVTQSSFNACNTTSPLS-RT----TNSPASVTLT-------------ASG-  102 (362)
Q Consensus        51 ~f~vGD~L~F---~~~~~------~h~V~~V~~~~y~~C~~~~~i~-~~----~~G~~~v~l~-------------~~G-  102 (362)
                      ..++||.|-|   +|..+      .+.|++|++.+|+.|+...... .+    -.+...|++.             ++| 
T Consensus        25 ~v~igD~LdIiCP~~~~~~~~~~E~~~LY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~kftikFq~fsP~p~GlEF~pg~  104 (178)
T 1iko_P           25 YPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNK  104 (178)
T ss_dssp             CCCTTCEEEEECCCCCSSSCSCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCCTTE
T ss_pred             EecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCC
Confidence            4567999977   55432      3778999999999998753111 11    1223344442             245 


Q ss_pred             ceEEEcCCC-----------CCCCC-CCeeeEEeecCC
Q 018026          103 PHYFICSFP-----------GHCLG-GQKLAINVSARG  128 (362)
Q Consensus       103 ~~yFic~~~-----------~HC~~-Gmk~~I~V~~~~  128 (362)
                      .|||||.-.           ++|.. +|||.|.|....
T Consensus       105 ~YY~IstS~G~~~gl~~~~gG~C~t~~Mkl~ikV~~~~  142 (178)
T 1iko_P          105 DYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDA  142 (178)
T ss_dssp             EEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETCC-
T ss_pred             ceEEEecCCcccccccccCCCccccceeEEEEEeecCC
Confidence            789998863           78988 999999997653

>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5

Probab=96.74  E-value=0.0007  Score=59.98  Aligned_cols=79  Identities=20%  Similarity=0.283  Sum_probs=51.1

Q ss_pred             ceecCCEEEEE---eC------CCCceEEEEcccccCCCCCCC-CCc--cCC--CCCceEEcC-------------Ccc-
Q 018026          224 NFSVGDILVFD---YP------ARVHDVVEVTKAAYDSCNSSS-TIS--KST--NPPTRITLG-------------TAG-  275 (362)
Q Consensus       224 ~f~vGD~LvF~---y~------~~~hsV~~v~~~~y~~C~~~~-~~~--~~~--~G~~~v~l~-------------~~G-  275 (362)
                      ..++||.|-|-   |.      ...+.|++|++++|+.|+... ...  .-+  .+...+++.             ++| 
T Consensus        25 ~v~igD~LdIiCP~~~~~~~~~~E~~~LY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~kftikFq~fsP~p~GlEF~pg~  104 (178)
T 1iko_P           25 YPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNK  104 (178)
T ss_dssp             CCCTTCEEEEECCCCCSSSCSCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCCTTE
T ss_pred             EecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCC
Confidence            45679999884   43      234789999999999998763 111  111  122223221             244 


Q ss_pred             cEEEEcCCC-----------CCCCC-CCeEEEEeeCCCC
Q 018026          276 EHYFFCTFP-----------GHCSA-GQKLAVNVTGGSS  302 (362)
Q Consensus       276 ~~yFic~~~-----------~HC~~-GmKl~I~V~~~~~  302 (362)
                      .|||||+-.           |+|.. +|||.|.|.....
T Consensus       105 ~YY~IstS~G~~~gl~~~~gG~C~t~~Mkl~ikV~~~~~  143 (178)
T 1iko_P          105 DYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDAS  143 (178)
T ss_dssp             EEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETCC--
T ss_pred             ceEEEecCCcccccccccCCCccccceeEEEEEeecCCC
Confidence            799999864           79975 9999999966543

>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}

Probab=96.72  E-value=0.0048  Score=61.37  Aligned_cols=76  Identities=24%  Similarity=0.320  Sum_probs=50.9

Q ss_pred             cCceeeeCCEEEEeecCC---CccEEEeCccccCCCCCCCCCCcCCCCCcEEEEeeccceEEEcCCCCCCCCCCeeeEEe
Q 018026           48 ANQTFTVGDTLVFNFAAG---NHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV  124 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~~---~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l~~~G~~yFic~~~~HC~~Gmk~~I~V  124 (362)
                      ...+++.||+|+|++.+.   .|++..-.......|.    +.-..+....|+++++|.+||.|...+|=..||+..|.|
T Consensus        55 p~i~v~~Gd~v~~~~~N~~~~~h~~~~~g~~~~~~~~----i~pG~~~~~~f~~~~~Gt~~y~~~~~~h~~~Gm~G~i~V  130 (447)
T 2dv6_A           55 PTLVVHEGETVQVNLVNGEGAQHDVVVDQYAARSAIV----NGKNASSTFSFVASKVGEFNYYCSIAGHRQAGMEGNIQV  130 (447)
T ss_dssp             CCEEEETTCEEEEEEECSSSSCBCCEETTTTEECCCB----CSTTBEEEEEEECCSCEEEEEECCSTTHHHHTCEEEEEE
T ss_pred             CeEEEcCCCEEEEEEEcCCCCceEEEEccCCccccee----cCCCCeEEEEEEcCCCEEEEEEeCCCChhhCCCEEEEEE
Confidence            568899999999988753   3776431111112232    111112223456678999999999988988899999999


Q ss_pred             ecC
Q 018026          125 SAR  127 (362)
Q Consensus       125 ~~~  127 (362)
                      ...
T Consensus       131 ~~~  133 (447)
T 2dv6_A          131 LPG  133 (447)
T ss_dssp             ESS
T ss_pred             eCC
Confidence            754

>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A

Probab=96.60  E-value=0.00086  Score=54.14  Aligned_cols=67  Identities=10%  Similarity=0.112  Sum_probs=43.8

Q ss_pred             cCceeeeCCEEEEeecCC---CccEEEeCccccCCCCCCCCCCcCCCCC-cEEEE--eeccceEEEcCCCCCCC-CCCee
Q 018026           48 ANQTFTVGDTLVFNFAAG---NHDVTRVTQSSFNACNTTSPLSRTTNSP-ASVTL--TASGPHYFICSFPGHCL-GGQKL  120 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~~---~h~V~~V~~~~y~~C~~~~~i~~~~~G~-~~v~l--~~~G~~yFic~~~~HC~-~Gmk~  120 (362)
                      ...+++.||.|.|.+.+.   .|++.. ...+. .+       ....|. ..+++  +++|.|+|.|..  ||. .+|+.
T Consensus        38 ~~i~v~~G~~V~~~~~n~d~~~H~~~i-~~~~~-~~-------~i~pG~~~~~~f~~~~~G~y~~~C~~--~~~~~~M~g  106 (112)
T 1iby_A           38 ETLVVKKGDAVKVVVENKSPISEGFSI-DAFGV-QE-------VIKAGETKTISFTADKAGAFTIWCQL--HPKNIHLPG  106 (112)
T ss_dssp             CEEEEETTCEEEEEEEECSSSCEEEEE-GGGTE-EE-------EECTTCEEEEEEECCSCEEEEEBCSS--SCTTTBCCE
T ss_pred             CEEEEeCCCEEEEEEEECCCCeEEEEE-cCCCc-ee-------EeCCCCEEEEEEECCCCEEEEEECCC--CCchHHCEE
Confidence            567899999999987642   477643 21111 11       112222 34444  899999999988  774 34999


Q ss_pred             eEEee
Q 018026          121 AINVS  125 (362)
Q Consensus       121 ~I~V~  125 (362)
                      .|.|.
T Consensus       107 ~i~V~  111 (112)
T 1iby_A          107 TLNVV  111 (112)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99885

>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A

Probab=96.57  E-value=0.0011  Score=53.41  Aligned_cols=67  Identities=13%  Similarity=0.111  Sum_probs=44.0

Q ss_pred             cCCceecCCEEEEEeCCC---CceEEEEcccccCCCCCCCCCccCCCCC-c--eEEcCCcccEEEEcCCCCCCCC-CCeE
Q 018026          221 RNNNFSVGDILVFDYPAR---VHDVVEVTKAAYDSCNSSSTISKSTNPP-T--RITLGTAGEHYFFCTFPGHCSA-GQKL  293 (362)
Q Consensus       221 ~~~~f~vGD~LvF~y~~~---~hsV~~v~~~~y~~C~~~~~~~~~~~G~-~--~v~l~~~G~~yFic~~~~HC~~-GmKl  293 (362)
                      ...++++||.|.|.+.+.   .|++.. ..... .       .....|. .  .++.+++|.|+|.|..  ||.. +|+.
T Consensus        38 ~~i~v~~G~~V~~~~~n~d~~~H~~~i-~~~~~-~-------~~i~pG~~~~~~f~~~~~G~y~~~C~~--~~~~~~M~g  106 (112)
T 1iby_A           38 ETLVVKKGDAVKVVVENKSPISEGFSI-DAFGV-Q-------EVIKAGETKTISFTADKAGAFTIWCQL--HPKNIHLPG  106 (112)
T ss_dssp             CEEEEETTCEEEEEEEECSSSCEEEEE-GGGTE-E-------EEECTTCEEEEEEECCSCEEEEEBCSS--SCTTTBCCE
T ss_pred             CEEEEeCCCEEEEEEEECCCCeEEEEE-cCCCc-e-------eEeCCCCEEEEEEECCCCEEEEEECCC--CCchHHCEE
Confidence            557899999999987432   577643 21111 1       1122232 2  3445999999999997  7753 4999


Q ss_pred             EEEee
Q 018026          294 AVNVT  298 (362)
Q Consensus       294 ~I~V~  298 (362)
                      .|.|.
T Consensus       107 ~i~V~  111 (112)
T 1iby_A          107 TLNVV  111 (112)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99985

>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...

Probab=96.50  E-value=0.031  Score=53.43  Aligned_cols=35  Identities=14%  Similarity=0.071  Sum_probs=29.9

Q ss_pred             eEEcCCcccEEEEcCCCCCC-CCCCeEEEEeeCCCC
Q 018026          268 RITLGTAGEHYFFCTFPGHC-SAGQKLAVNVTGGSS  302 (362)
Q Consensus       268 ~v~l~~~G~~yFic~~~~HC-~~GmKl~I~V~~~~~  302 (362)
                      .|+.+.+|.++|.|....|+ +.||...|+|.....
T Consensus       286 lv~~~~pG~y~~~~h~~~~~~~~G~~~~~~V~~~~~  321 (336)
T 1oe1_A          286 LYTFKQPGVYAYLNHNLIEAFELGAAGHIKVEGKWN  321 (336)
T ss_dssp             EEECCSCEEEEEEESSHHHHHTTSCEEEEEEESCCC
T ss_pred             EEEcCCCceEEEEechhhccccCCCeEEEEECCCCC
Confidence            46678899999999998898 899999999986543

>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}

Probab=96.06  E-value=0.01  Score=55.83  Aligned_cols=78  Identities=8%  Similarity=0.044  Sum_probs=47.4

Q ss_pred             cCCceecCCEEEEEeCC-C----CceEEEEcccccCCC-C---CCCC-----CccCCCC--CceEEcCCcccEEEEcCCC
Q 018026          221 RNNNFSVGDILVFDYPA-R----VHDVVEVTKAAYDSC-N---SSST-----ISKSTNP--PTRITLGTAGEHYFFCTFP  284 (362)
Q Consensus       221 ~~~~f~vGD~LvF~y~~-~----~hsV~~v~~~~y~~C-~---~~~~-----~~~~~~G--~~~v~l~~~G~~yFic~~~  284 (362)
                      ...+++.||+++|.+.+ +    .|.+..- ...|+-- +   ...+     +......  ...++.+.+|.+.|.|-+.
T Consensus       195 ~~l~v~~Ge~vr~~l~N~g~~~~~H~fHlh-G~~f~v~~~g~~~~~~~~~Dtv~v~pg~~~~v~~~~~~pG~~~~hCH~~  273 (288)
T 3gdc_A          195 FPVKVKQHELVRIHLINVLEYDPINSFHIH-GNFFHYYPTGTMLTPSEYTDTISQVQGQRGILELRFPYPGKFMFHAHKT  273 (288)
T ss_dssp             SCEEEETTCCEEEEEEECCCSSSEEEEEET-TCCEEEEETTCCSSCSEEESEEEEETTCEEEEEECCCSCEEEEEECSSH
T ss_pred             cccccCCCCEEEEEEEeCCCCCcceeEEEc-CCEEEEEcCCCccCCCceeeEEEeCCCceEEEEEECCCCEEEEEEecCh
Confidence            34688999999988843 2    2655431 1111100 0   0000     1111111  1235557899999999999


Q ss_pred             CCCCCCCeEEEEeeC
Q 018026          285 GHCSAGQKLAVNVTG  299 (362)
Q Consensus       285 ~HC~~GmKl~I~V~~  299 (362)
                      .|=++||...|+|.+
T Consensus       274 ~H~~~GM~~~~~V~~  288 (288)
T 3gdc_A          274 EFAELGWMGFFEVSA  288 (288)
T ss_dssp             HHHTTTCEEEEEEEC
T ss_pred             HHHhcCCCEEEEEeC
Confidence            999999999999864

>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus}

Probab=95.88  E-value=0.0067  Score=51.76  Aligned_cols=76  Identities=18%  Similarity=0.178  Sum_probs=48.0

Q ss_pred             CceecCCEEEEE---eCC---------CCceEEEEcccccCCCCCCC-CCccC----CCCCce--------------EEc
Q 018026          223 NNFSVGDILVFD---YPA---------RVHDVVEVTKAAYDSCNSSS-TISKS----TNPPTR--------------ITL  271 (362)
Q Consensus       223 ~~f~vGD~LvF~---y~~---------~~hsV~~v~~~~y~~C~~~~-~~~~~----~~G~~~--------------v~l  271 (362)
                      ..+++||.|-+-   |..         ....+++|++++|+.|+... +...+    -.+..+              +..
T Consensus        22 i~V~i~D~ldIiCP~~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~p~G~EF  101 (141)
T 3d12_B           22 LYPQIGDRLDLLCPRARPPGPHSSPSYEFYKLYLVEGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEF  101 (141)
T ss_dssp             ECCCTTCEEEEEECCCSSCCTTCCSSCCCCEEEEECSHHHHTTBCCSSCEEEEECCCSSSCEEEEEESSSCCSCCSCCCC
T ss_pred             EEecCCCEEEEECCCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCeEEEEeCCCCCCeEEEEEEEEcCCCCCceee
Confidence            467789999774   442         34578889999999998752 21110    011111              122


Q ss_pred             CCcccEEEEcCC-----------CCCCCC-CCeEEEEee
Q 018026          272 GTAGEHYFFCTF-----------PGHCSA-GQKLAVNVT  298 (362)
Q Consensus       272 ~~~G~~yFic~~-----------~~HC~~-GmKl~I~V~  298 (362)
                      ..-..||||++-           +|-|.. .|||.|.|.
T Consensus       102 ~pG~~YY~ISts~G~~~gl~~~~gG~C~t~~Mkl~i~V~  140 (141)
T 3d12_B          102 RSHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVG  140 (141)
T ss_dssp             CTTCEEEEEECSCSSTTTTTCCBCSHHHHTCCEEEEECC
T ss_pred             eCCCeEEEEecCCCCcccccccCCCccccceEEEEEEec
Confidence            222368888774           467864 899999985

>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A

Probab=95.75  E-value=0.064  Score=51.26  Aligned_cols=80  Identities=15%  Similarity=0.180  Sum_probs=47.8

Q ss_pred             cCceeeeCCEEEEeecCC-----CccEEEeCccccCCCCCCCCCCcCCCCCcEEEEeeccceEEEcCCCC-----CCCCC
Q 018026           48 ANQTFTVGDTLVFNFAAG-----NHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPG-----HCLGG  117 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~~-----~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l~~~G~~yFic~~~~-----HC~~G  117 (362)
                      ..++++.||+|++++.+.     -|.+..-.....+.-.....+.-..+-...|+++.+|.+||.|...+     |=..|
T Consensus        64 P~i~~~~Gd~v~v~~~N~~~~~h~Hg~~~~~~~~~~~~~~~~~i~PG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~~G  143 (333)
T 1mzy_A           64 PLMIVHEGDYVELTLINPPENTMPHNIDFHAATGALGGGGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVSG  143 (333)
T ss_dssp             CEEEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGGGGGCCBCTTEEEEEEEECCSCEEEEEECCCSTTHHHHHHHTT
T ss_pred             CcEEecCCCEEEEEEEECCCCcccccceecCCCCCCCCCceeEeCCCCEEEEEEECCCCEEEEEeecCCcccchhhhhCC
Confidence            346889999999988764     36654311111110000011111111123566688999999998864     66789


Q ss_pred             CeeeEEeecC
Q 018026          118 QKLAINVSAR  127 (362)
Q Consensus       118 mk~~I~V~~~  127 (362)
                      |...|.|...
T Consensus       144 l~G~~iV~~~  153 (333)
T 1mzy_A          144 MAGCIMVLPR  153 (333)
T ss_dssp             CEEEEEEECT
T ss_pred             CEEEEEEccC
Confidence            9999998743

>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B*

Probab=95.54  E-value=0.022  Score=48.40  Aligned_cols=76  Identities=21%  Similarity=0.298  Sum_probs=47.5

Q ss_pred             CceecCCEEEEE---eCC-------CCceEEEEcccccCCCCCCCCCc-c------CC-CCCceEEc-------------
Q 018026          223 NNFSVGDILVFD---YPA-------RVHDVVEVTKAAYDSCNSSSTIS-K------ST-NPPTRITL-------------  271 (362)
Q Consensus       223 ~~f~vGD~LvF~---y~~-------~~hsV~~v~~~~y~~C~~~~~~~-~------~~-~G~~~v~l-------------  271 (362)
                      +.+++||.|-+-   |..       ....+++|++++|+.|+...... .      .. .+..++++             
T Consensus        23 i~V~i~D~lDIiCP~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFq~fsP~p~G~E  102 (138)
T 1shx_A           23 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE  102 (138)
T ss_dssp             EEECTTCEEEEECCCCCTTCCSTTCCCEEEEEECHHHHHTTCSSSSEEEEEEECCTTCTTSSCEEEEECCSCCSSTTCCC
T ss_pred             EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEEcCCCCCcee
Confidence            467889999773   542       35677899999999998754211 1      11 12223222             


Q ss_pred             CCcc-cEEEEcCC-----CCCCCCCCeEEEEeeCCC
Q 018026          272 GTAG-EHYFFCTF-----PGHCSAGQKLAVNVTGGS  301 (362)
Q Consensus       272 ~~~G-~~yFic~~-----~~HC~~GmKl~I~V~~~~  301 (362)
                      =++| .||||++-     ++-|   |||.|.|....
T Consensus       103 F~pG~~YY~ISts~~~~~g~~C---lrL~V~V~p~~  135 (138)
T 1shx_A          103 FRPGREYFYISSAIPDNGRRSC---LKLKVFVRPTN  135 (138)
T ss_dssp             CCTTEEEEEEEEESSCCSCSCC---CEEEEEECCTT
T ss_pred             ecCCCeEEEEEcCCCCCCCCce---eEEEEEEEccc
Confidence            1245 67888653     3456   99999997654

>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...

Probab=95.37  E-value=0.16  Score=42.36  Aligned_cols=88  Identities=13%  Similarity=0.146  Sum_probs=51.5

Q ss_pred             EEEecCCCCCcCCCCCCCCCCccccCceeee-CCEEEEeecCCC--------ccEEEeCccccCC---------------
Q 018026           24 RHVVGDALGWIVPPNGPATYSNWAANQTFTV-GDTLVFNFAAGN--------HDVTRVTQSSFNA---------------   79 (362)
Q Consensus        24 ~~~VGg~~GW~~~~~~~~~y~~Wa~~~~f~v-GD~L~F~~~~~~--------h~V~~V~~~~y~~---------------   79 (362)
                      ++.|-.+++..+.+          +.+++.. |++|.|.+.+..        |+++..+..+.+.               
T Consensus         4 ~v~i~~~d~M~F~p----------~~i~V~~~Ge~V~~~l~N~G~~p~~~M~Hn~Vl~~~~~~~~~~~~~m~~~~~~~y~   73 (125)
T 3fsa_A            4 SVDIQGNDQMQFNT----------NAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYL   73 (125)
T ss_dssp             EEEEEBCTTSCBSC----------SEEEECTTCSEEEEEEECCSSCCHHHHCBCCEEEEHHHHHHHHHHHHHHCGGGTTS
T ss_pred             EEEEEccCCcEEec----------CEEEEecCCCEEEEEEEECCcccccccCceEEEcccchHHHHHHHHHhcChhhccC
Confidence            34454444566543          5566654 999988887533        9998763322211               


Q ss_pred             -CCCCCCC---CcCCCCC-cEEEEe-----eccceEEEcCCCCCCCCCCeeeEEee
Q 018026           80 -CNTTSPL---SRTTNSP-ASVTLT-----ASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        80 -C~~~~~i---~~~~~G~-~~v~l~-----~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                       =+...-+   .....|. ..++++     ++|.|-|+|+  +|=  |||..|.|.
T Consensus        74 ~~~d~~via~t~~l~pGes~~vtf~~~~l~~~G~y~f~C~--gH~--~M~G~v~V~  125 (125)
T 3fsa_A           74 KPDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCA--AHA--AMKGTLTLK  125 (125)
T ss_dssp             CTTCTTCCEECCCBCTTCEEEEEEEGGGC---CCEEEECS--SST--TCEEEEEEC
T ss_pred             CCCCccceeccceeCCCcEEEEEEeCcCcCCCccEEEEcC--CCC--CcEEEEEEC
Confidence             0001111   1122333 456666     4599999999  885  999999873

>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*

Probab=95.27  E-value=0.029  Score=47.28  Aligned_cols=67  Identities=18%  Similarity=0.217  Sum_probs=45.3

Q ss_pred             cCceeeeCCEEEEeecCC--CccEEEeCccccCCCCCCCCCCcCCCC---CcEEEEeeccceEEEcCCCCCCC---CCCe
Q 018026           48 ANQTFTVGDTLVFNFAAG--NHDVTRVTQSSFNACNTTSPLSRTTNS---PASVTLTASGPHYFICSFPGHCL---GGQK  119 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~~--~h~V~~V~~~~y~~C~~~~~i~~~~~G---~~~v~l~~~G~~yFic~~~~HC~---~Gmk  119 (362)
                      +..++.+||.|.|...+.  .|++.. .....+        .....|   ...++++++|.|+|+|+.  +|.   .+|+
T Consensus        60 ~~l~Vp~G~~V~~~vts~DV~Hsf~i-p~~~~k--------~d~~PG~~~~~~~~~~~~G~y~~~C~e--~CG~~H~~M~  128 (135)
T 2cua_A           60 NPIEVPQGAEIVFKITSPDVIHGFHV-EGTNIN--------VEVLPGEVSTVRYTFKRPGEYRIICNQ--YCGLGHQNMF  128 (135)
T ss_dssp             SSEEEETTSEEEEEEEBSSSCEEEEE-TTSSCE--------EEECBTBCEEEEEECCSCEEEEEECCS--CCSTTSTTCE
T ss_pred             CEEEEcCCCEEEEEEEeCCccceEEe-cCCCce--------eEeCCCCcEEEEEEcCCCEEEEEECcc--cCCCCcCCCE
Confidence            578899999999998652  466542 111111        011122   246888999999999987  444   7999


Q ss_pred             eeEEee
Q 018026          120 LAINVS  125 (362)
Q Consensus       120 ~~I~V~  125 (362)
                      +.|.|.
T Consensus       129 g~v~V~  134 (135)
T 2cua_A          129 GTIVVK  134 (135)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999885

>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*

Probab=95.27  E-value=0.029  Score=47.24  Aligned_cols=70  Identities=16%  Similarity=0.243  Sum_probs=45.6

Q ss_pred             cCCceecCCEEEEEeCCC--CceEEEEcccccCCCCCCCCCccCCCCCceEEcCCcccEEEEcCCCCCCC---CCCeEEE
Q 018026          221 RNNNFSVGDILVFDYPAR--VHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCS---AGQKLAV  295 (362)
Q Consensus       221 ~~~~f~vGD~LvF~y~~~--~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~HC~---~GmKl~I  295 (362)
                      +..++.+||.|.|...+.  .|++.. ...+.+ -+    ..........++.+++|.|+|+|..  +|.   .+|++.|
T Consensus        60 ~~l~Vp~G~~V~~~vts~DV~Hsf~i-p~~~~k-~d----~~PG~~~~~~~~~~~~G~y~~~C~e--~CG~~H~~M~g~v  131 (135)
T 2cua_A           60 NPIEVPQGAEIVFKITSPDVIHGFHV-EGTNIN-VE----VLPGEVSTVRYTFKRPGEYRIICNQ--YCGLGHQNMFGTI  131 (135)
T ss_dssp             SSEEEETTSEEEEEEEBSSSCEEEEE-TTSSCE-EE----ECBTBCEEEEEECCSCEEEEEECCS--CCSTTSTTCEEEE
T ss_pred             CEEEEcCCCEEEEEEEeCCccceEEe-cCCCce-eE----eCCCCcEEEEEEcCCCEEEEEECcc--cCCCCcCCCEEEE
Confidence            568899999999998543  466642 111110 00    0001112346888999999999987  454   6899999


Q ss_pred             Eee
Q 018026          296 NVT  298 (362)
Q Consensus       296 ~V~  298 (362)
                      .|.
T Consensus       132 ~V~  134 (135)
T 2cua_A          132 VVK  134 (135)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            986

>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens}

Probab=95.23  E-value=0.026  Score=49.77  Aligned_cols=77  Identities=22%  Similarity=0.298  Sum_probs=48.4

Q ss_pred             CceecCCEEEEE---eCC-------CCceEEEEcccccCCCCCCCCCc-c------C-CCCCceEEc-------------
Q 018026          223 NNFSVGDILVFD---YPA-------RVHDVVEVTKAAYDSCNSSSTIS-K------S-TNPPTRITL-------------  271 (362)
Q Consensus       223 ~~f~vGD~LvF~---y~~-------~~hsV~~v~~~~y~~C~~~~~~~-~------~-~~G~~~v~l-------------  271 (362)
                      +.+++||.|-+-   |+.       ....+++|++++|+.|+..+... .      . ..+..++++             
T Consensus        52 i~V~i~D~LDIiCP~y~~~~~~~~~E~y~LY~Vs~e~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~FSP~p~G~E  131 (177)
T 2x11_B           52 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE  131 (177)
T ss_dssp             EEECTTCEEEEECCCCCSSSCSSSCCCEEEEEECHHHHHHTCCTTTEEEEEEECCTTCSSSSCEEEEECCSSCSSTTCCC
T ss_pred             EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCcEEEEeCCCCCCCCCeEEEEEEEEcCCCCCCcc
Confidence            467899999773   542       35677899999999998754221 1      1 112323222             


Q ss_pred             CCcc-cEEEEcCC-----CCCCCCCCeEEEEeeCCCC
Q 018026          272 GTAG-EHYFFCTF-----PGHCSAGQKLAVNVTGGSS  302 (362)
Q Consensus       272 ~~~G-~~yFic~~-----~~HC~~GmKl~I~V~~~~~  302 (362)
                      =++| .||||++-     ++-|   |||.|.|.....
T Consensus       132 F~pG~~YYyISTS~~~~~g~~C---lrLkV~V~p~~~  165 (177)
T 2x11_B          132 FRPGREYFYISSAIPDNGRRSC---LKLKVFVRPTNS  165 (177)
T ss_dssp             CCTTEEEEEEEEESSCCCSSSC---CEEEEEECCTTT
T ss_pred             ccCCCeEEEEecCCCCCCCCcc---eEEEEEEEcCCC
Confidence            1345 67888653     2446   999999987654

>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B*

Probab=95.17  E-value=0.022  Score=50.47  Aligned_cols=77  Identities=19%  Similarity=0.342  Sum_probs=46.7

Q ss_pred             CceecCCEEEEE---eCC--------CCceEEEEcccccCCCCCCC-CCc------cCC-CCCceEEc------------
Q 018026          223 NNFSVGDILVFD---YPA--------RVHDVVEVTKAAYDSCNSSS-TIS------KST-NPPTRITL------------  271 (362)
Q Consensus       223 ~~f~vGD~LvF~---y~~--------~~hsV~~v~~~~y~~C~~~~-~~~------~~~-~G~~~v~l------------  271 (362)
                      +.+++||.|-+-   |+.        ....+++|++++|+.|+... ...      ... .|..+|++            
T Consensus        50 i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~e~y~sC~~~~~~~~~~~C~~P~~~~~p~kftikFQ~FSP~p~Gl  129 (182)
T 3czu_B           50 IHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGK  129 (182)
T ss_dssp             EEECTTCEEEEECCCCC--CCCGGGSCCEEEEEECHHHHHHTCCCCGGGEEEEECCTTCTTSCCEEEEECCSCCSCTTSC
T ss_pred             EEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhhhccCCCCCcEEEEeCCCCCCCCCcEEEEEEEEcCCCCCCe
Confidence            467899999774   532        23577899999999998754 111      111 12222211            


Q ss_pred             -CCcc-cEEEEcC----CCCCCCCCCeEEEEeeCCCC
Q 018026          272 -GTAG-EHYFFCT----FPGHCSAGQKLAVNVTGGSS  302 (362)
Q Consensus       272 -~~~G-~~yFic~----~~~HC~~GmKl~I~V~~~~~  302 (362)
                       =++| .||||++    .+|.|   |||.|.|.....
T Consensus       130 EF~pG~dYY~ISts~~~~gg~C---mrL~v~V~~k~~  163 (182)
T 3czu_B          130 EFKEGHSYYYISKPIHQHEDRC---LRLKVTVSGKIT  163 (182)
T ss_dssp             CCCTTCEEEEEEEESSSCCCSC---CEEEEEECC---
T ss_pred             eEeCCCeEEEEEccCCCCCCcc---eEEEEEEecCCC
Confidence             0334 6888876    35667   999999986553

>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...

Probab=95.15  E-value=0.084  Score=44.00  Aligned_cols=74  Identities=18%  Similarity=0.219  Sum_probs=43.5

Q ss_pred             cCCceec-CCEEEEEeCC-C-------CceEEEEccc----------------ccCCCCCCCCC---ccCCCCC-ceEEc
Q 018026          221 RNNNFSV-GDILVFDYPA-R-------VHDVVEVTKA----------------AYDSCNSSSTI---SKSTNPP-TRITL  271 (362)
Q Consensus       221 ~~~~f~v-GD~LvF~y~~-~-------~hsV~~v~~~----------------~y~~C~~~~~~---~~~~~G~-~~v~l  271 (362)
                      +.+++.. |++|.|.+.+ +       .|+++..+..                +|-.=+..+-+   .....|. ..+++
T Consensus        18 ~~i~V~~~Ge~V~~~l~N~G~~p~~~M~Hn~Vl~~~~~~~~~~~~~m~~~~~~~y~~~~d~~via~t~~l~pGes~~vtf   97 (125)
T 3fsa_A           18 NAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSVTF   97 (125)
T ss_dssp             SEEEECTTCSEEEEEEECCSSCCHHHHCBCCEEEEHHHHHHHHHHHHHHCGGGTTSCTTCTTCCEECCCBCTTCEEEEEE
T ss_pred             CEEEEecCCCEEEEEEEECCcccccccCceEEEcccchHHHHHHHHHhcChhhccCCCCCccceeccceeCCCcEEEEEE
Confidence            5566654 9999888853 3       3999986432                22111111111   1123343 33444


Q ss_pred             C-----CcccEEEEcCCCCCCCCCCeEEEEee
Q 018026          272 G-----TAGEHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       272 ~-----~~G~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      +     ++|.|-|+|+  +|=  |||..|.|.
T Consensus        98 ~~~~l~~~G~y~f~C~--gH~--~M~G~v~V~  125 (125)
T 3fsa_A           98 DVSKLKEGEQYMFFCA--AHA--AMKGTLTLK  125 (125)
T ss_dssp             EGGGC---CCEEEECS--SST--TCEEEEEEC
T ss_pred             eCcCcCCCccEEEEcC--CCC--CcEEEEEEC
Confidence            3     6699999999  886  999999883

>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens}

Probab=94.98  E-value=0.015  Score=51.33  Aligned_cols=77  Identities=21%  Similarity=0.323  Sum_probs=49.1

Q ss_pred             CceeeeCCEEEE---eecC-------CCccEEEeCccccCCCCCCCCCCc-------C-CCCCcEEEEe-----------
Q 018026           49 NQTFTVGDTLVF---NFAA-------GNHDVTRVTQSSFNACNTTSPLSR-------T-TNSPASVTLT-----------   99 (362)
Q Consensus        49 ~~~f~vGD~L~F---~~~~-------~~h~V~~V~~~~y~~C~~~~~i~~-------~-~~G~~~v~l~-----------   99 (362)
                      ...+++||.|-+   +|..       ....++.|++++|++|+.....+.       . ..++..|++.           
T Consensus        51 ~i~V~i~D~LDIiCP~y~~~~~~~~~E~y~LY~Vs~e~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~FSP~p~G~  130 (177)
T 2x11_B           51 HIDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGF  130 (177)
T ss_dssp             EEEECTTCEEEEECCCCCSSSCSSSCCCEEEEEECHHHHHHTCCTTTEEEEEEECCTTCSSSSCEEEEECCSSCSSTTCC
T ss_pred             eEEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCcEEEEeCCCCCCCCCeEEEEEEEEcCCCCCCc
Confidence            356889999976   5653       245567999999999987543211       0 1134344431           


Q ss_pred             --ecc-ceEEEcCC-----CCCCCCCCeeeEEeecCC
Q 018026          100 --ASG-PHYFICSF-----PGHCLGGQKLAINVSARG  128 (362)
Q Consensus       100 --~~G-~~yFic~~-----~~HC~~Gmk~~I~V~~~~  128 (362)
                        ++| .||||++-     ++-|   |||.|.|....
T Consensus       131 EF~pG~~YYyISTS~~~~~g~~C---lrLkV~V~p~~  164 (177)
T 2x11_B          131 EFRPGREYFYISSAIPDNGRRSC---LKLKVFVRPTN  164 (177)
T ss_dssp             CCCTTEEEEEEEEESSCCCSSSC---CEEEEEECCTT
T ss_pred             cccCCCeEEEEecCCCCCCCCcc---eEEEEEEEcCC
Confidence              345 67888642     2346   99999998654

>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E

Probab=94.41  E-value=0.026  Score=48.05  Aligned_cols=76  Identities=20%  Similarity=0.250  Sum_probs=47.3

Q ss_pred             CceecCCEEEEE---eCC------CCceEEEEcccccCCCCCCC-CCccC----CCCCceEEcC-------------Ccc
Q 018026          223 NNFSVGDILVFD---YPA------RVHDVVEVTKAAYDSCNSSS-TISKS----TNPPTRITLG-------------TAG  275 (362)
Q Consensus       223 ~~f~vGD~LvF~---y~~------~~hsV~~v~~~~y~~C~~~~-~~~~~----~~G~~~v~l~-------------~~G  275 (362)
                      ...++||.|-|-   |+.      ....+++|++++|+.|+... ....+    -.+...+++.             ++|
T Consensus        23 v~v~i~D~ldIiCP~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~~~G~eF~~g  102 (140)
T 2vsm_B           23 LYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKN  102 (140)
T ss_dssp             ECCCTTCEEEEEECCCC---CCCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCEEEEEESSSCCSCSSCCCCCTT
T ss_pred             EEecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCC
Confidence            345689999884   432      24678889999999998763 21111    1122222211             334


Q ss_pred             -cEEEEcCC-----------CCCCC-CCCeEEEEee
Q 018026          276 -EHYFFCTF-----------PGHCS-AGQKLAVNVT  298 (362)
Q Consensus       276 -~~yFic~~-----------~~HC~-~GmKl~I~V~  298 (362)
                       .||||++-           +|-|. ..|||.|.|.
T Consensus       103 ~~YY~Ists~g~~~gl~~~~gG~C~t~~mkl~i~V~  138 (140)
T 2vsm_B          103 KDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVG  138 (140)
T ss_dssp             EEEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEET
T ss_pred             CceEEEecCCCCccccccccCCccccceEEEEEEec
Confidence             67888774           35796 4899999985

>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*

Probab=94.28  E-value=0.33  Score=45.15  Aligned_cols=81  Identities=15%  Similarity=0.130  Sum_probs=48.7

Q ss_pred             cCCceecCCEEEEEeCC---CCceEEEEcccccCC---CCCCCC---------CccCCCCC--ceEEcC---CcccEEEE
Q 018026          221 RNNNFSVGDILVFDYPA---RVHDVVEVTKAAYDS---CNSSST---------ISKSTNPP--TRITLG---TAGEHYFF  280 (362)
Q Consensus       221 ~~~~f~vGD~LvF~y~~---~~hsV~~v~~~~y~~---C~~~~~---------~~~~~~G~--~~v~l~---~~G~~yFi  280 (362)
                      ...+++.||+++|.+.+   ..|.+..- ...|.-   -....+         +.......  ..+..+   .+|.++|-
T Consensus       168 p~i~v~~G~~vri~l~N~~~~~Hp~HlH-G~~f~v~~~G~~~~p~~~~~~~Dtv~v~pg~~~~~~~~~~~~~npG~w~~H  246 (276)
T 3kw8_A          168 PDFEATVGDRVEIVMITHGEYYHTFHMH-GHRWADNRTGILTGPDDPSRVIDNKITGPADSFGFQIIAGEGVGAGAWMYH  246 (276)
T ss_dssp             CCEEEETTCEEEEEEEEESSCCEEEEET-TCCEESSSSSSCCSTTCCCCEESEEEECTTCEEEEEEETTTTTCSEEEEEE
T ss_pred             CCEEEecCCEEEEEEecCCCcceeEEEc-cceeEEeccCccCCCcccccCCccEEeCCCceEEEEEEeccCCCCCeEEEE
Confidence            44689999999887742   35666541 111110   000000         01111111  234444   58999999


Q ss_pred             cCCCCCCCCCCeEEEEeeCCCC
Q 018026          281 CTFPGHCSAGQKLAVNVTGGSS  302 (362)
Q Consensus       281 c~~~~HC~~GmKl~I~V~~~~~  302 (362)
                      |-...|=+.||...+.|.....
T Consensus       247 CH~~~H~~~GM~g~~~V~~~~~  268 (276)
T 3kw8_A          247 CHVQSHSDMGMVGLFLVKKPDG  268 (276)
T ss_dssp             ECSHHHHHTTCEEEEEEECTTS
T ss_pred             CCCchHhhCCCeEEEEEeCCCC
Confidence            9999999999999999987653

>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B*

Probab=94.17  E-value=0.05  Score=48.11  Aligned_cols=76  Identities=16%  Similarity=0.355  Sum_probs=47.4

Q ss_pred             CceeeeCCEEEE---eecCC--------CccEEEeCccccCCCCCCCCCC--------cCCCCCcEEEEe----------
Q 018026           49 NQTFTVGDTLVF---NFAAG--------NHDVTRVTQSSFNACNTTSPLS--------RTTNSPASVTLT----------   99 (362)
Q Consensus        49 ~~~f~vGD~L~F---~~~~~--------~h~V~~V~~~~y~~C~~~~~i~--------~~~~G~~~v~l~----------   99 (362)
                      .+.+++||.|-+   +|..+        ...++.|++++|++|+.....+        ....|+..|++.          
T Consensus        49 ~i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~e~y~sC~~~~~~~~~~~C~~P~~~~~p~kftikFQ~FSP~p~G  128 (182)
T 3czu_B           49 TIHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLG  128 (182)
T ss_dssp             EEEECTTCEEEEECCCCC--CCCGGGSCCEEEEEECHHHHHHTCCCCGGGEEEEECCTTCTTSCCEEEEECCSCCSCTTS
T ss_pred             eEEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhhhccCCCCCcEEEEeCCCCCCCCCcEEEEEEEEcCCCCCC
Confidence            457889999976   56532        2567799999999998654111        111223333331          


Q ss_pred             ---ecc-ceEEEcC----CCCCCCCCCeeeEEeecC
Q 018026          100 ---ASG-PHYFICS----FPGHCLGGQKLAINVSAR  127 (362)
Q Consensus       100 ---~~G-~~yFic~----~~~HC~~Gmk~~I~V~~~  127 (362)
                         ++| .||||+.    .++.|   |||.|.|...
T Consensus       129 lEF~pG~dYY~ISts~~~~gg~C---mrL~v~V~~k  161 (182)
T 3czu_B          129 KEFKEGHSYYYISKPIHQHEDRC---LRLKVTVSGK  161 (182)
T ss_dssp             CCCCTTCEEEEEEEESSSCCCSC---CEEEEEECC-
T ss_pred             eeEeCCCeEEEEEccCCCCCCcc---eEEEEEEecC
Confidence               344 6888875    35677   8999999744

>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*

Probab=93.63  E-value=2.1  Score=40.43  Aligned_cols=31  Identities=23%  Similarity=0.312  Sum_probs=27.6

Q ss_pred             CcccEEEEcCCCCCCCCCCeEEEEeeCCCCC
Q 018026          273 TAGEHYFFCTFPGHCSAGQKLAVNVTGGSST  303 (362)
Q Consensus       273 ~~G~~yFic~~~~HC~~GmKl~I~V~~~~~~  303 (362)
                      .+|.+.|-|-+..|=.+||...++|......
T Consensus       245 nPG~w~~HCHi~~H~~~GM~~~f~V~~~d~~  275 (313)
T 3tas_A          245 GAGAWMYHCHVQSHSDMGMVGLFLVKKPDGT  275 (313)
T ss_dssp             CSEEEEEEECSHHHHHTTCEEEEEEECTTCC
T ss_pred             CCEeEEEEeCChHHHHCCCeEEEEEECCCCC
Confidence            5799999999999999999999999887654

>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B*

Probab=93.60  E-value=0.053  Score=46.01  Aligned_cols=76  Identities=21%  Similarity=0.333  Sum_probs=48.2

Q ss_pred             CceeeeCCEEEE---eecC-------CCccEEEeCccccCCCCCCCCCCc--------CCCCCcEEEEe-----------
Q 018026           49 NQTFTVGDTLVF---NFAA-------GNHDVTRVTQSSFNACNTTSPLSR--------TTNSPASVTLT-----------   99 (362)
Q Consensus        49 ~~~f~vGD~L~F---~~~~-------~~h~V~~V~~~~y~~C~~~~~i~~--------~~~G~~~v~l~-----------   99 (362)
                      .+.+++||.|-+   +|..       ....++.|++++|++|+.......        ...++..|++.           
T Consensus        22 ~i~V~i~D~lDIiCP~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFq~fsP~p~G~  101 (138)
T 1shx_A           22 HIDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGF  101 (138)
T ss_dssp             EEEECTTCEEEEECCCCCTTCCSTTCCCEEEEEECHHHHHTTCSSSSEEEEEEECCTTCTTSSCEEEEECCSCCSSTTCC
T ss_pred             eEEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEEcCCCCCce
Confidence            356889999976   5553       245567999999999987542211        01134344431           


Q ss_pred             --ecc-ceEEEcCC-----CCCCCCCCeeeEEeecC
Q 018026          100 --ASG-PHYFICSF-----PGHCLGGQKLAINVSAR  127 (362)
Q Consensus       100 --~~G-~~yFic~~-----~~HC~~Gmk~~I~V~~~  127 (362)
                        ++| .||||++-     ++-|   |||.|.|...
T Consensus       102 EF~pG~~YY~ISts~~~~~g~~C---lrL~V~V~p~  134 (138)
T 1shx_A          102 EFRPGREYFYISSAIPDNGRRSC---LKLKVFVRPT  134 (138)
T ss_dssp             CCCTTEEEEEEEEESSCCSCSCC---CEEEEEECCT
T ss_pred             eecCCCeEEEEEcCCCCCCCCce---eEEEEEEEcc
Confidence              245 67888642     3457   9999999754

>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus}

Probab=93.57  E-value=0.039  Score=46.95  Aligned_cols=76  Identities=20%  Similarity=0.241  Sum_probs=48.5

Q ss_pred             ceeeeCCEEEE---eecC---------CCccEEEeCccccCCCCCCCCCC-c----CCCCCcEEEEe-------------
Q 018026           50 QTFTVGDTLVF---NFAA---------GNHDVTRVTQSSFNACNTTSPLS-R----TTNSPASVTLT-------------   99 (362)
Q Consensus        50 ~~f~vGD~L~F---~~~~---------~~h~V~~V~~~~y~~C~~~~~i~-~----~~~G~~~v~l~-------------   99 (362)
                      ..+++||.|-+   +|..         ....++.|++++|++|+....-+ .    .-.++..|++.             
T Consensus        22 i~V~i~D~ldIiCP~~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~p~G~EF  101 (141)
T 3d12_B           22 LYPQIGDRLDLLCPRARPPGPHSSPSYEFYKLYLVEGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEF  101 (141)
T ss_dssp             ECCCTTCEEEEEECCCSSCCTTCCSSCCCCEEEEECSHHHHTTBCCSSCEEEEECCCSSSCEEEEEESSSCCSCCSCCCC
T ss_pred             EEecCCCEEEEECCCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCeEEEEeCCCCCCeEEEEEEEEcCCCCCceee
Confidence            46788999976   4553         23567889999999998753111 0    01122233321             


Q ss_pred             ecc-ceEEEcCC-----------CCCCCC-CCeeeEEee
Q 018026          100 ASG-PHYFICSF-----------PGHCLG-GQKLAINVS  125 (362)
Q Consensus       100 ~~G-~~yFic~~-----------~~HC~~-Gmk~~I~V~  125 (362)
                      ++| .||||+.-           +|-|.. .|||.|.|.
T Consensus       102 ~pG~~YY~ISts~G~~~gl~~~~gG~C~t~~Mkl~i~V~  140 (141)
T 3d12_B          102 RSHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVG  140 (141)
T ss_dssp             CTTCEEEEEECSCSSTTTTTCCBCSHHHHTCCEEEEECC
T ss_pred             eCCCeEEEEecCCCCcccccccCCCccccceEEEEEEec
Confidence            234 68888764           356876 899999986

>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}

Probab=92.71  E-value=0.068  Score=52.96  Aligned_cols=77  Identities=22%  Similarity=0.333  Sum_probs=52.0

Q ss_pred             cCCceecCCEEEEEeCCC---CceEEEEcccccCCCCCCCCCccCCCCCceEEcCCcccEEEEcCCCCCCCCCCeEEEEe
Q 018026          221 RNNNFSVGDILVFDYPAR---VHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNV  297 (362)
Q Consensus       221 ~~~~f~vGD~LvF~y~~~---~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~HC~~GmKl~I~V  297 (362)
                      ...+++.||+|+|++.+.   .|++..-.......|..    ....+-..+|+++++|.+||.|...+|=..||+..|.|
T Consensus        55 p~i~v~~Gd~v~~~~~N~~~~~h~~~~~g~~~~~~~~i----~pG~~~~~~f~~~~~Gt~~y~~~~~~h~~~Gm~G~i~V  130 (447)
T 2dv6_A           55 PTLVVHEGETVQVNLVNGEGAQHDVVVDQYAARSAIVN----GKNASSTFSFVASKVGEFNYYCSIAGHRQAGMEGNIQV  130 (447)
T ss_dssp             CCEEEETTCEEEEEEECSSSSCBCCEETTTTEECCCBC----STTBEEEEEEECCSCEEEEEECCSTTHHHHTCEEEEEE
T ss_pred             CeEEEcCCCEEEEEEEcCCCCceEEEEccCCcccceec----CCCCeEEEEEEcCCCEEEEEEeCCCChhhCCCEEEEEE
Confidence            557899999999988432   37764322222223321    11112223566788999999999989988899999999


Q ss_pred             eCCC
Q 018026          298 TGGS  301 (362)
Q Consensus       298 ~~~~  301 (362)
                      ....
T Consensus       131 ~~~~  134 (447)
T 2dv6_A          131 LPGN  134 (447)
T ss_dssp             ESSC
T ss_pred             eCCc
Confidence            8654

>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3

Probab=92.53  E-value=0.2  Score=47.33  Aligned_cols=79  Identities=13%  Similarity=0.238  Sum_probs=32.7

Q ss_pred             CCceecCCEEEEEeCCC-Cc-eEEEE--cccccCC-CCCCCCCcc--CCCCCceEEcCCcccEEEEcCCCCCCCCCCeEE
Q 018026          222 NNNFSVGDILVFDYPAR-VH-DVVEV--TKAAYDS-CNSSSTISK--STNPPTRITLGTAGEHYFFCTFPGHCSAGQKLA  294 (362)
Q Consensus       222 ~~~f~vGD~LvF~y~~~-~h-sV~~v--~~~~y~~-C~~~~~~~~--~~~G~~~v~l~~~G~~yFic~~~~HC~~GmKl~  294 (362)
                      ..+++.||+++|.+-+. .. ..+.+  ....|+. -...+.+..  ...-...|+.+.+|.++|.|-...|..+||...
T Consensus       216 ~l~v~~G~~vrlrliN~g~~~~~h~~hlhG~~~~~dG~~~dtv~l~pger~~v~~~~~~pG~~~~hch~~~H~~~GM~~~  295 (306)
T 1sdd_A          216 DITVCAHDHISWHLIGMSSGPELFSIHFNGQVLEQNHHKISAITLVSATSTTANMTVSPEGRWTIASLIPRHFQAGMQAY  295 (306)
T ss_dssp             CCCCCCC------BBCCCSSSCEECCBCSSTTCEETTEECSCCCEETTCCBC--------CCCCCBCCSTTTGGGTCBCC
T ss_pred             ceEEcCCCEEEEEEEeCCCCCccEEEEECCcEeeeCCEEcceEEECCCcEEEEEEEcCCCeEEEEEeCChHHHhcCCeEE
Confidence            46788899999887443 11 22211  1112221 000111111  112223466678999999999999999999999


Q ss_pred             EEeeCC
Q 018026          295 VNVTGG  300 (362)
Q Consensus       295 I~V~~~  300 (362)
                      ++|...
T Consensus       296 ~~V~~~  301 (306)
T 1sdd_A          296 IDIKNC  301 (306)
T ss_dssp             C-----
T ss_pred             EEEecC
Confidence            998753

>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens}

Probab=92.45  E-value=0.22  Score=43.03  Aligned_cols=35  Identities=23%  Similarity=0.239  Sum_probs=26.1

Q ss_pred             CceecCCEEEEE---eCC--------CCceEEEEcccccCCCCCCC
Q 018026          223 NNFSVGDILVFD---YPA--------RVHDVVEVTKAAYDSCNSSS  257 (362)
Q Consensus       223 ~~f~vGD~LvF~---y~~--------~~hsV~~v~~~~y~~C~~~~  257 (362)
                      +.+++||.|-+-   |..        ....+++|++++|+.|+...
T Consensus        32 i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~   77 (157)
T 2wo3_B           32 VEVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQ   77 (157)
T ss_dssp             EEECTTCEEEEECCCCCSSCCCGGGSCCEEEEEECHHHHHHTCCTT
T ss_pred             EEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhccccCCC
Confidence            467899999874   432        23357899999999998754

>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}

Probab=91.61  E-value=0.36  Score=46.48  Aligned_cols=81  Identities=14%  Similarity=0.099  Sum_probs=48.9

Q ss_pred             cCCceecCCEEEEEeCC---CCceEEEEcccccCCC-C--CCCCC------c--cCCCC-Cc--eEEc---CCcccEEEE
Q 018026          221 RNNNFSVGDILVFDYPA---RVHDVVEVTKAAYDSC-N--SSSTI------S--KSTNP-PT--RITL---GTAGEHYFF  280 (362)
Q Consensus       221 ~~~~f~vGD~LvF~y~~---~~hsV~~v~~~~y~~C-~--~~~~~------~--~~~~G-~~--~v~l---~~~G~~yFi  280 (362)
                      ...+++.||+++|.+.+   ..|.+..-. ..|.-- +  ...+.      .  ....| ..  .|+.   +.+|.++|-
T Consensus       209 ~~l~v~~Ge~vri~l~N~g~~~HpfHlHG-h~f~v~~~G~~~~p~~~~~~~Dtv~v~PG~~~~v~~~~~~~~~pG~w~~H  287 (343)
T 3cg8_A          209 PDFEATVGDRVEIVMITHGEYYHTFHMHG-HRWADNRTGILTGPDDPSRVIDNKITGPADSFGFQIIAGEGVGAGAWMYH  287 (343)
T ss_dssp             CCEEEETTCEEEEEEEEESSCCEEEEETT-CCEESSSSSSCCSTTCCCCEESEEEECTTCEEEEEEETTTTTCSEEEEEE
T ss_pred             ccEEeCCCCEEEEEEEcCCccccccEecC-cEEEEeccCcccCCCCcccceeeEEeCCCCEEEEEEEECCCCCCeeEEEe
Confidence            34689999999987742   356665411 111100 0  00000      0  01112 22  3442   578999999


Q ss_pred             cCCCCCCCCCCeEEEEeeCCCC
Q 018026          281 CTFPGHCSAGQKLAVNVTGGSS  302 (362)
Q Consensus       281 c~~~~HC~~GmKl~I~V~~~~~  302 (362)
                      |-+..|=+.||...+.|.....
T Consensus       288 CHi~~H~~~GM~g~~~V~~~~~  309 (343)
T 3cg8_A          288 CHVQSHSDMGMVGLFLVKKPDG  309 (343)
T ss_dssp             ECSHHHHHTTCEEEEEEECTTS
T ss_pred             CCCHHHHhccCcEEEEEecCCC
Confidence            9999999999999999987654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=91.53  E-value=0.15  Score=52.94  Aligned_cols=71  Identities=14%  Similarity=0.194  Sum_probs=45.7

Q ss_pred             cCceeeeCCEEEEeecCC------CccEEEeCccccCCCCCCCCCCcCCCCCcEEEEeeccceEEEcCC---CCCCCCCC
Q 018026           48 ANQTFTVGDTLVFNFAAG------NHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSF---PGHCLGGQ  118 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~~------~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l~~~G~~yFic~~---~~HC~~Gm  118 (362)
                      ...++.+||+|.|.+.+.      .|++.. .....+ +.    +.-..+....|+++++|.|||+|..   ..|  .||
T Consensus       513 p~I~V~~Gd~V~~~ltN~d~~~Dv~Hgf~i-p~~gv~-~~----i~PG~t~t~~Fta~~pGtY~yhC~e~Cg~~H--~gM  584 (595)
T 1fwx_A          513 ESFTVKEGDEVTVIVTNLDEIDDLTHGFTM-GNYGVA-ME----IGPQMTSSVTFVAANPGVYWYYCQWFCHALH--MEM  584 (595)
T ss_dssp             SEEEEETTCEEEEEEEECCCSTTCCEEEEE-TTTTEE-EE----ECTTCEEEEEEECCSCEEEEEECCSCCSTTC--TTC
T ss_pred             CEEEEECCCEEEEEEEeCCCCCCceeeEEe-cCCCcc-ee----eCCCCeEEEEEECCCCEEEEEECCCCCCCCc--cCC
Confidence            567899999999997652      466643 111111 11    0001112246778899999999984   356  499


Q ss_pred             eeeEEeec
Q 018026          119 KLAINVSA  126 (362)
Q Consensus       119 k~~I~V~~  126 (362)
                      +..|.|..
T Consensus       585 ~G~IiV~p  592 (595)
T 1fwx_A          585 RGRMLVEP  592 (595)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEc
Confidence            99999974

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=91.50  E-value=0.14  Score=53.32  Aligned_cols=72  Identities=11%  Similarity=0.152  Sum_probs=46.4

Q ss_pred             cCCceecCCEEEEEeCCC------CceEEEEcccccCCCCCCCCCccCCCCCceEEcCCcccEEEEcCC---CCCCCCCC
Q 018026          221 RNNNFSVGDILVFDYPAR------VHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTF---PGHCSAGQ  291 (362)
Q Consensus       221 ~~~~f~vGD~LvF~y~~~------~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~---~~HC~~Gm  291 (362)
                      ...++++||.|.|.+.+.      .|++..-+ ...+ +.    +....+...+|+.+++|.|||+|..   ..|  .||
T Consensus       513 p~I~V~~Gd~V~~~ltN~d~~~Dv~Hgf~ip~-~gv~-~~----i~PG~t~t~~Fta~~pGtY~yhC~e~Cg~~H--~gM  584 (595)
T 1fwx_A          513 ESFTVKEGDEVTVIVTNLDEIDDLTHGFTMGN-YGVA-ME----IGPQMTSSVTFVAANPGVYWYYCQWFCHALH--MEM  584 (595)
T ss_dssp             SEEEEETTCEEEEEEEECCCSTTCCEEEEETT-TTEE-EE----ECTTCEEEEEEECCSCEEEEEECCSCCSTTC--TTC
T ss_pred             CEEEEECCCEEEEEEEeCCCCCCceeeEEecC-CCcc-ee----eCCCCeEEEEEECCCCEEEEEECCCCCCCCc--cCC
Confidence            457889999999997542      47764321 1111 11    1111122346788999999999994   345  499


Q ss_pred             eEEEEeeCC
Q 018026          292 KLAVNVTGG  300 (362)
Q Consensus       292 Kl~I~V~~~  300 (362)
                      +..|.|...
T Consensus       585 ~G~IiV~p~  593 (595)
T 1fwx_A          585 RGRMLVEPK  593 (595)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEEcC
Confidence            999999764

>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}

Probab=91.43  E-value=2.5  Score=39.65  Aligned_cols=32  Identities=19%  Similarity=0.279  Sum_probs=27.8

Q ss_pred             CCcccEEEEcCCCCCCCCCCeEEEEeeCCCCC
Q 018026          272 GTAGEHYFFCTFPGHCSAGQKLAVNVTGGSST  303 (362)
Q Consensus       272 ~~~G~~yFic~~~~HC~~GmKl~I~V~~~~~~  303 (362)
                      +.+|.+.|-|-+..|=++||...++|......
T Consensus       260 dnPG~w~~HCHi~~H~~~GM~~~f~V~~~~~~  291 (299)
T 3t9w_A          260 VGPGMWMYHCHVQNHSDMGMAGMFLVRNADGT  291 (299)
T ss_dssp             TCSEEEEEEECSHHHHHTTCEEEEEEECTTSC
T ss_pred             CCCeeEEEEcCCHHHHhcCCeEEEEEECCCCC
Confidence            45799999999999999999999999876643

>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...

Probab=91.43  E-value=0.41  Score=41.73  Aligned_cols=69  Identities=17%  Similarity=0.176  Sum_probs=42.8

Q ss_pred             cCceeeeCCEEEEeecCC--CccEEEeCccccCCCCCCCCCCcCCCC---CcEEEEeeccceEEEcCC-CCCCCCCCeee
Q 018026           48 ANQTFTVGDTLVFNFAAG--NHDVTRVTQSSFNACNTTSPLSRTTNS---PASVTLTASGPHYFICSF-PGHCLGGQKLA  121 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~~--~h~V~~V~~~~y~~C~~~~~i~~~~~G---~~~v~l~~~G~~yFic~~-~~HC~~Gmk~~  121 (362)
                      +...+.+|+.+.|...+.  .|+... ..-..+        .....|   ...++.+++|.||++|+. -|+--.+|++.
T Consensus        93 n~l~VP~G~~Vr~~vTS~DViHsf~I-P~lgik--------~da~PG~~n~~~~~~~kpG~y~g~Cse~CG~~Hs~M~g~  163 (168)
T 3s8f_B           93 NPIEVPQGAEIVFKITSPDVIHGFHV-EGTNIN--------VEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGHQNMFGT  163 (168)
T ss_dssp             SSEEEETTSEEEEEEECSSSCEEEEE-TTSSCE--------EEECTTBCEEEEEECCSCEEEEEECCSCCSTTGGGCEEE
T ss_pred             CEEEEeCCCeEEEEEecCCceEEEEE-CCCCeE--------EEecCCceeEEEEEeCCCEEEEEECCcCCCCCcCCCEEE
Confidence            456788899999987753  344432 111110        011122   246778999999999996 23333569999


Q ss_pred             EEee
Q 018026          122 INVS  125 (362)
Q Consensus       122 I~V~  125 (362)
                      |.|.
T Consensus       164 V~V~  167 (168)
T 3s8f_B          164 IVVK  167 (168)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9986

>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E

Probab=91.31  E-value=0.18  Score=42.80  Aligned_cols=77  Identities=17%  Similarity=0.246  Sum_probs=48.5

Q ss_pred             ceeeeCCEEEE---eecCC------CccEEEeCccccCCCCCCC-CCCcC----CCCCcEEEEe-------------ecc
Q 018026           50 QTFTVGDTLVF---NFAAG------NHDVTRVTQSSFNACNTTS-PLSRT----TNSPASVTLT-------------ASG  102 (362)
Q Consensus        50 ~~f~vGD~L~F---~~~~~------~h~V~~V~~~~y~~C~~~~-~i~~~----~~G~~~v~l~-------------~~G  102 (362)
                      ...++||.|-|   +|..+      ...++.|++.+|+.|+... ....+    -.+...+++.             ++|
T Consensus        23 v~v~i~D~ldIiCP~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~~~G~eF~~g  102 (140)
T 2vsm_B           23 LYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKN  102 (140)
T ss_dssp             ECCCTTCEEEEEECCCC---CCCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCEEEEEESSSCCSCSSCCCCCTT
T ss_pred             EEecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCC
Confidence            34567999977   45432      4667889999999998753 21111    1233334332             344


Q ss_pred             -ceEEEcCCC-----------CCCCC-CCeeeEEeec
Q 018026          103 -PHYFICSFP-----------GHCLG-GQKLAINVSA  126 (362)
Q Consensus       103 -~~yFic~~~-----------~HC~~-Gmk~~I~V~~  126 (362)
                       .||||+.-.           |-|.. .|||.|.|..
T Consensus       103 ~~YY~Ists~g~~~gl~~~~gG~C~t~~mkl~i~V~~  139 (140)
T 2vsm_B          103 KDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGH  139 (140)
T ss_dssp             EEEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETC
T ss_pred             CceEEEecCCCCccccccccCCccccceEEEEEEecC
Confidence             678887642           46776 8999999964

>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens}

Probab=90.87  E-value=0.17  Score=43.82  Aligned_cols=36  Identities=14%  Similarity=0.265  Sum_probs=26.6

Q ss_pred             CceeeeCCEEEE---eecCC--------CccEEEeCccccCCCCCCC
Q 018026           49 NQTFTVGDTLVF---NFAAG--------NHDVTRVTQSSFNACNTTS   84 (362)
Q Consensus        49 ~~~f~vGD~L~F---~~~~~--------~h~V~~V~~~~y~~C~~~~   84 (362)
                      .+.+++||.|-+   +|..+        ...++.|++++|++|+...
T Consensus        31 ~i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~   77 (157)
T 2wo3_B           31 TVEVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQ   77 (157)
T ss_dssp             EEEECTTCEEEEECCCCCSSCCCGGGSCCEEEEEECHHHHHHTCCTT
T ss_pred             EEEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhccccCCC
Confidence            456889999977   55432        2347799999999998754

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=90.48  E-value=0.19  Score=52.12  Aligned_cols=71  Identities=18%  Similarity=0.308  Sum_probs=46.4

Q ss_pred             cCCceecCCEEEEEeCCC------CceEEEEcccccCCCCCCCCCccCCCCCceEEcCCcccEEEEcCCCCCCCCC---C
Q 018026          221 RNNNFSVGDILVFDYPAR------VHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAG---Q  291 (362)
Q Consensus       221 ~~~~f~vGD~LvF~y~~~------~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~HC~~G---m  291 (362)
                      +..++.+||.|.|...+.      .|++..-+ ...+ -+    +.........++.+++|.|||+|+.  +|..+   |
T Consensus       558 ~eI~VP~GdtVrfiLTN~D~veDViHSF~IPs-lGIK-~D----aiPGrtnsvtFtadkPGvY~y~CSE--~CGa~Hs~M  629 (638)
T 3sbq_A          558 QEFTVKQGDEVTVTITNIDQIEDVSHGFVVVN-HGVS-ME----ISPQQTSSITFVADKPGLHWYYCSW--FCHALHMEM  629 (638)
T ss_dssp             CEEEEETTCEEEEEEEECCCSTTCCEEEEETT-TTEE-EE----ECTTCEEEEEEECCSCEEEEEECCS--CCSTTCTTC
T ss_pred             CEEEEecCceeEEEEecCCcCCCceeeeEecC-CCce-ee----eCCCCeEEEEEEcCCCEEEEEECCC--cCCCCcccc
Confidence            568899999999987552      57764311 1100 00    0011122345788999999999997  67654   9


Q ss_pred             eEEEEeeC
Q 018026          292 KLAVNVTG  299 (362)
Q Consensus       292 Kl~I~V~~  299 (362)
                      +..|.|.+
T Consensus       630 ~G~ViVEP  637 (638)
T 3sbq_A          630 VGRMMVEP  637 (638)
T ss_dssp             EEEEEEEC
T ss_pred             eEEEEEec
Confidence            99999974

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=89.85  E-value=0.28  Score=50.82  Aligned_cols=68  Identities=16%  Similarity=0.282  Sum_probs=45.9

Q ss_pred             cCceeeeCCEEEEeecCC------CccEEEeCccccCCCCCCCCCCcCCCC---CcEEEEeeccceEEEcCCCCCCCCC-
Q 018026           48 ANQTFTVGDTLVFNFAAG------NHDVTRVTQSSFNACNTTSPLSRTTNS---PASVTLTASGPHYFICSFPGHCLGG-  117 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~~------~h~V~~V~~~~y~~C~~~~~i~~~~~G---~~~v~l~~~G~~yFic~~~~HC~~G-  117 (362)
                      +..++.+||.|.|...+.      .|++..-. ...+        ....-|   ...|+.+++|.|||+|+.  +|..+ 
T Consensus       558 ~eI~VP~GdtVrfiLTN~D~veDViHSF~IPs-lGIK--------~DaiPGrtnsvtFtadkPGvY~y~CSE--~CGa~H  626 (638)
T 3sbq_A          558 QEFTVKQGDEVTVTITNIDQIEDVSHGFVVVN-HGVS--------MEISPQQTSSITFVADKPGLHWYYCSW--FCHALH  626 (638)
T ss_dssp             CEEEEETTCEEEEEEEECCCSTTCCEEEEETT-TTEE--------EEECTTCEEEEEEECCSCEEEEEECCS--CCSTTC
T ss_pred             CEEEEecCceeEEEEecCCcCCCceeeeEecC-CCce--------eeeCCCCeEEEEEEcCCCEEEEEECCC--cCCCCc
Confidence            578899999999987752      46664311 1100        011222   245777899999999997  66665 


Q ss_pred             --CeeeEEeec
Q 018026          118 --QKLAINVSA  126 (362)
Q Consensus       118 --mk~~I~V~~  126 (362)
                        |+..|.|..
T Consensus       627 s~M~G~ViVEP  637 (638)
T 3sbq_A          627 MEMVGRMMVEP  637 (638)
T ss_dssp             TTCEEEEEEEC
T ss_pred             ccceEEEEEec
Confidence              999999863

>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...

Probab=89.62  E-value=0.53  Score=41.04  Aligned_cols=71  Identities=15%  Similarity=0.177  Sum_probs=44.9

Q ss_pred             cCCceecCCEEEEEeCCC--CceEEEEcccccC-CCCCCCCCccCCCCCceEEcCCcccEEEEcCC-CCCCCCCCeEEEE
Q 018026          221 RNNNFSVGDILVFDYPAR--VHDVVEVTKAAYD-SCNSSSTISKSTNPPTRITLGTAGEHYFFCTF-PGHCSAGQKLAVN  296 (362)
Q Consensus       221 ~~~~f~vGD~LvF~y~~~--~hsV~~v~~~~y~-~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~-~~HC~~GmKl~I~  296 (362)
                      +...+.+|+.+.|...+.  .|+...   .++. .-+.    .........++.+++|.||++|+. -|+-..+|++.|.
T Consensus        93 n~l~VP~G~~Vr~~vTS~DViHsf~I---P~lgik~da----~PG~~n~~~~~~~kpG~y~g~Cse~CG~~Hs~M~g~V~  165 (168)
T 3s8f_B           93 NPIEVPQGAEIVFKITSPDVIHGFHV---EGTNINVEV----LPGEVSTVRYTFKRPGEYRIICNQYCGLGHQNMFGTIV  165 (168)
T ss_dssp             SSEEEETTSEEEEEEECSSSCEEEEE---TTSSCEEEE----CTTBCEEEEEECCSCEEEEEECCSCCSTTGGGCEEEEE
T ss_pred             CEEEEeCCCeEEEEEecCCceEEEEE---CCCCeEEEe----cCCceeEEEEEeCCCEEEEEECCcCCCCCcCCCEEEEE
Confidence            568899999999998653  355533   1111 0000    001112345788999999999996 2333356999999


Q ss_pred             ee
Q 018026          297 VT  298 (362)
Q Consensus       297 V~  298 (362)
                      |.
T Consensus       166 V~  167 (168)
T 3s8f_B          166 VK  167 (168)
T ss_dssp             EE
T ss_pred             Ee
Confidence            86

>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}

Probab=89.61  E-value=0.59  Score=44.44  Aligned_cols=34  Identities=9%  Similarity=0.123  Sum_probs=27.3

Q ss_pred             eEEcCCcccEEEEcCCCCCCC------CCCeEEEEeeCCC
Q 018026          268 RITLGTAGEHYFFCTFPGHCS------AGQKLAVNVTGGS  301 (362)
Q Consensus       268 ~v~l~~~G~~yFic~~~~HC~------~GmKl~I~V~~~~  301 (362)
                      .+..+.+|.+.|-|-+..|-.      .||...|.+....
T Consensus       239 ~~~a~~pG~w~~hCH~~~H~~~g~~~~~Gm~~~i~~~g~~  278 (318)
T 3g5w_A          239 ILNMDNPGLWMIHDHVDTHTTNGDKPDGGIMTTIEYEEVG  278 (318)
T ss_dssp             EEECCSCSEEEEEESSGGGSCBTTBSSCBSEEEEEETTTC
T ss_pred             EEECCCCeeEEEEeccHHHhhccCcCCCCCEEEEEECCCC
Confidence            456688999999999999998      4677778886544

>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0

Probab=86.10  E-value=0.91  Score=38.06  Aligned_cols=35  Identities=17%  Similarity=0.273  Sum_probs=26.2

Q ss_pred             CceecCCEEEE---EeCC--------CCceEEEEcccccCCCCCCC
Q 018026          223 NNFSVGDILVF---DYPA--------RVHDVVEVTKAAYDSCNSSS  257 (362)
Q Consensus       223 ~~f~vGD~LvF---~y~~--------~~hsV~~v~~~~y~~C~~~~  257 (362)
                      ..+++||.|-+   +|+.        ....++.|++++|+.|+...
T Consensus        22 v~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~   67 (132)
T 3hei_B           22 IHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQS   67 (132)
T ss_dssp             EEECTTCEEEEECCCCCTTSSCGGGCCCEEEEEECHHHHHHTCCSC
T ss_pred             EEeCCCCeEEEECCCCCCCCCCCCCccEEEEEEeCHHHhccccCCC
Confidence            46789999977   4432        23567789999999999754

>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*

Probab=84.52  E-value=0.73  Score=49.27  Aligned_cols=76  Identities=11%  Similarity=0.044  Sum_probs=47.3

Q ss_pred             CCceecCCEEEEEeCCC-----CceEEEEcccccCCCC----CCCCCccCCCCCc--eEEcCCcccEEEEcCCCCCCCCC
Q 018026          222 NNNFSVGDILVFDYPAR-----VHDVVEVTKAAYDSCN----SSSTISKSTNPPT--RITLGTAGEHYFFCTFPGHCSAG  290 (362)
Q Consensus       222 ~~~f~vGD~LvF~y~~~-----~hsV~~v~~~~y~~C~----~~~~~~~~~~G~~--~v~l~~~G~~yFic~~~~HC~~G  290 (362)
                      ..+++.||.+++.+.+.     .|.+.. -...|.--.    ..+.+...-.+..  .|..+.+|.+.|.|-...|...|
T Consensus       369 ~l~v~~Ge~vr~rliN~g~~~~~H~fHl-hGh~f~Vv~~dg~~~Dtv~l~Pg~~~~v~~~ad~pG~w~~hcH~~~H~~~G  447 (770)
T 2r7e_B          369 GLVMAQDQRIRWYLLSMGSNENIHSIHF-SGHVFTVRKKEEYKMALYNLYPGVFETVEMLPSKAGIWRVECLIGEHLHAG  447 (770)
T ss_dssp             CCCCCSSSCEEEECCCCCSSSCCCEEEB-SSCCEECCSSSCCEESEEECCTTCCCEEEECCSSCBCCCBCCCSHHHHTTB
T ss_pred             CeEEeCCCEEEEEEEeCCCCcceEEEEE-cCCEEEEEecCCceeeEEEECCCeEEEEEEEeCCCCceEEEeccccccccc
Confidence            47899999999988542     355543 111222110    0111122222223  34557889999999999999999


Q ss_pred             CeEEEEee
Q 018026          291 QKLAVNVT  298 (362)
Q Consensus       291 mKl~I~V~  298 (362)
                      |...+.|.
T Consensus       448 M~~~~~V~  455 (770)
T 2r7e_B          448 MSTLFLVY  455 (770)
T ss_dssp             CCCCCCBC
T ss_pred             cccccccc
Confidence            99998884

>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0

Probab=83.07  E-value=0.9  Score=38.10  Aligned_cols=36  Identities=11%  Similarity=0.227  Sum_probs=26.8

Q ss_pred             CceeeeCCEEEE---eecCC--------CccEEEeCccccCCCCCCC
Q 018026           49 NQTFTVGDTLVF---NFAAG--------NHDVTRVTQSSFNACNTTS   84 (362)
Q Consensus        49 ~~~f~vGD~L~F---~~~~~--------~h~V~~V~~~~y~~C~~~~   84 (362)
                      ...+++||.|-+   +|+.+        ...+..|++++|++|+...
T Consensus        21 ~v~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~   67 (132)
T 3hei_B           21 TIHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQS   67 (132)
T ss_dssp             EEEECTTCEEEEECCCCCTTSSCGGGCCCEEEEEECHHHHHHTCCSC
T ss_pred             eEEeCCCCeEEEECCCCCCCCCCCCCccEEEEEEeCHHHhccccCCC
Confidence            356789999966   56543        2456789999999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	362
d2cbpa_	96	b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativ	1e-39
d2cbpa_	96	b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativ	6e-38
d1ws8a_	104	b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo)	8e-38
d1ws8a_	104	b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo)	9e-38
d1jera_	110	b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativ	8e-36
d1jera_	110	b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativ	2e-34
d1f56a_	91	b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia olera	2e-35
d1f56a_	91	b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia olera	1e-33
d1paza_	120	b.6.1.1 (A:) Pseudoazurin {Alcaligenes faecalis, s	0.002

>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 96

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

 Score =  133 bits (337), Expect = 1e-39
 Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 7/102 (6%)

Query: 196 ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNS 255
           A +VVGG+ GWT         ++W +   F  GDIL+F+Y   +H+VV V +  + +CN+
Sbjct: 1   AVYVVGGSGGWTFN------TESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNT 54

Query: 256 SSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNV 297
            +     T+   +I L   G+ YF C FPGHC +G K+AVN 
Sbjct: 55  PAGAKVYTSGRDQIKL-PKGQSYFICNFPGHCQSGMKIAVNA 95

>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 96

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

 Score =  129 bits (325), Expect = 6e-38
 Identities = 36/100 (36%), Positives = 50/100 (50%), Gaps = 7/100 (7%)

Query: 25  HVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTS 84
           +VVG + GW           +W   + F  GD L+FN+    H+V  V Q  F+ CNT +
Sbjct: 3   YVVGGSGGWTFN------TESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPA 56

Query: 85  PLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
                T+    + L   G  YFIC+FPGHC  G K+A+N 
Sbjct: 57  GAKVYTSGRDQIKLP-KGQSYFICNFPGHCQSGMKIAVNA 95

>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]} Length = 104

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Mavicyanin
species: Zucchini (Cucurbita pepo) [TaxId: 3663]

 Score =  129 bits (325), Expect = 8e-38
 Identities = 41/102 (40%), Positives = 55/102 (53%), Gaps = 2/102 (1%)

Query: 196 ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNS 255
             H VG + GWT        Y  WA +N F VGD L+F+Y  + H+V++V +  + SCNS
Sbjct: 3   TVHKVGDSTGWTTLVPYD--YAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNS 60

Query: 256 SSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNV 297
           SS  +  T+    I L   G  YF C  PGHC  GQK+ + V
Sbjct: 61  SSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKV 102

>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]} Length = 104

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Mavicyanin
species: Zucchini (Cucurbita pepo) [TaxId: 3663]

 Score =  128 bits (324), Expect = 9e-38
 Identities = 42/102 (41%), Positives = 59/102 (57%), Gaps = 2/102 (1%)

Query: 23  TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNT 82
           T H VGD+ GW         Y+ WA++  F VGD+L+FN+    H+V +V Q  F +CN+
Sbjct: 3   TVHKVGDSTGWTTLVP--YDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNS 60

Query: 83  TSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
           +SP +  T+   S+ L   G  YF+C  PGHC  GQK+ I V
Sbjct: 61  SSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKV 102

>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 110

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Stellacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

 Score =  124 bits (312), Expect = 8e-36
 Identities = 50/106 (47%), Positives = 64/106 (60%), Gaps = 3/106 (2%)

Query: 23  TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRV-TQSSFNACN 81
           T H+VGD  GW VP + P  YS WAA +TF VGD+L FNF A  H+V  + T+ SF+ACN
Sbjct: 4   TVHIVGDNTGWSVPSS-PNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACN 62

Query: 82  TTSPLSRTTNS-PASVTLTASGPHYFICSFPGHCLGGQKLAINVSA 126
             +  +    + P    L   G HYF+C+   HC  GQKL+INV A
Sbjct: 63  FVNSDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSINVVA 108

>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 110

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Stellacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

 Score =  120 bits (303), Expect = 2e-34
 Identities = 43/108 (39%), Positives = 60/108 (55%), Gaps = 3/108 (2%)

Query: 196 ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEV-TKAAYDSCN 254
             H+VG   GW+VP + +  Y  WA    F VGD L F++PA  H+V E+ TK ++D+CN
Sbjct: 4   TVHIVGDNTGWSVPSSPNF-YSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACN 62

Query: 255 SSSTISK-STNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGS 301
             ++ +      P    L   G HYF CT   HCS GQKL++NV   +
Sbjct: 63  FVNSDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSINVVAAN 110

>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 91

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  122 bits (308), Expect = 2e-35
 Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 8/94 (8%)

Query: 31  LGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTT 90
           +GW       +   N A  ++F  GD LVF +  G H+V  V    + +C+        +
Sbjct: 5   IGW-------SFNVNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYS 57

Query: 91  NSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
           +    + LT  G +YFICSFPGHC GG K+AIN 
Sbjct: 58  SGQDRIKLTR-GQNYFICSFPGHCGGGMKIAINA 90

>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 91

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  117 bits (295), Expect = 1e-33
 Identities = 35/94 (37%), Positives = 49/94 (52%), Gaps = 8/94 (8%)

Query: 204 LGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKST 263
           +GW+          N AR  +F  GD+LVF Y    H+VV V    Y SC++       +
Sbjct: 5   IGWSF-------NVNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYS 57

Query: 264 NPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNV 297
           +   RI L   G++YF C+FPGHC  G K+A+N 
Sbjct: 58  SGQDRIKLTR-GQNYFICSFPGHCGGGMKIAINA 90

>d1paza_ b.6.1.1 (A:) Pseudoazurin {Alcaligenes faecalis, strain s-6 [TaxId: 511]} Length = 120

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Alcaligenes faecalis, strain s-6 [TaxId: 511]

 Score = 35.8 bits (82), Expect = 0.002
 Identities = 15/74 (20%), Positives = 22/74 (29%), Gaps = 5/74 (6%)

Query: 51  TFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSF 110
               GDT+ F      H+V  +                  N    +T+T  G +   C+ 
Sbjct: 24  KANPGDTVTFIPVDKGHNVESIKDMIPEG---AEKFKSKINENYVLTVTQPGAYLVKCTP 80

Query: 111 PGHCLGGQKLAINV 124
             H   G    I V
Sbjct: 81  --HYAMGMIALIAV 92

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	362
d1ws8a_	104	Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663	100.0
d2cbpa_	96	Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3	100.0
d1ws8a_	104	Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663	100.0
d2cbpa_	96	Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3	100.0
d1jera_	110	Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3	99.98
d1jera_	110	Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3	99.97
d1f56a_	91	Plantacyanin {Spinach (Spinacia oleracea) [TaxId:	99.96
d1f56a_	91	Plantacyanin {Spinach (Spinacia oleracea) [TaxId:	99.96
d1bypa_	99	Plastocyanin {White campion (Silene pratensis) [Ta	98.98
d1bypa_	99	Plastocyanin {White campion (Silene pratensis) [Ta	98.95
d1iuza_	98	Plastocyanin {Ulva pertusa, a sea lettuce [TaxId:	98.89
d2plta_	98	Plastocyanin {Green alga (Chlamydomonas reinhardti	98.88
d1iuza_	98	Plastocyanin {Ulva pertusa, a sea lettuce [TaxId:	98.86
d2cj3a1	105	Plastocyanin {Anabaena variabilis [TaxId: 1172]}	98.83
d1kdja_	102	Plastocyanin {Fern (Adiantum capillus-veneris) [Ta	98.79
d2cj3a1	105	Plastocyanin {Anabaena variabilis [TaxId: 1172]}	98.76
d2plta_	98	Plastocyanin {Green alga (Chlamydomonas reinhardti	98.74
d1kdja_	102	Plastocyanin {Fern (Adiantum capillus-veneris) [Ta	98.73
d1paza_	120	Pseudoazurin {Alcaligenes faecalis, strain s-6 [Ta	98.7
d1adwa_	123	Pseudoazurin {Thiosphaera pantotropha [TaxId: 8236	98.7
d2jxma1	97	Plastocyanin {Photosynthetic prokaryote (Prochloro	98.66
d2jxma1	97	Plastocyanin {Photosynthetic prokaryote (Prochloro	98.65
d2q5ba1	105	Plastocyanin {Cyanobacterium (Phormidium laminosum	98.64
d1plca_	99	Plastocyanin {Poplar (Populus nigra), variant ital	98.64
d1paza_	120	Pseudoazurin {Alcaligenes faecalis, strain s-6 [Ta	98.64
d1plca_	99	Plastocyanin {Poplar (Populus nigra), variant ital	98.64
d2q5ba1	105	Plastocyanin {Cyanobacterium (Phormidium laminosum	98.61
d1adwa_	123	Pseudoazurin {Thiosphaera pantotropha [TaxId: 8236	98.6
d1bqka_	124	Pseudoazurin {Achromobacter cycloclastes [TaxId: 2	98.59
d1bqka_	124	Pseudoazurin {Achromobacter cycloclastes [TaxId: 2	98.51
d1pmya_	123	Pseudoazurin {Methylobacterium extorquens, strain	98.5
d1pcsa_	98	Plastocyanin {Cyanobacterium (Synechocystis sp.),	98.49
d1pmya_	123	Pseudoazurin {Methylobacterium extorquens, strain	98.47
d1pcsa_	98	Plastocyanin {Cyanobacterium (Synechocystis sp.),	98.42
d1qhqa_	139	Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]	98.41
d1qhqa_	139	Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]	98.26
d1bxua_	91	Plastocyanin {Cyanobacterium (Synechocystis sp.),	98.2
d1bxua_	91	Plastocyanin {Cyanobacterium (Synechocystis sp.),	98.15
d2ov0a1	105	Amicyanin {Paracoccus denitrificans [TaxId: 266]}	97.96
d2ov0a1	105	Amicyanin {Paracoccus denitrificans [TaxId: 266]}	97.9
d1id2a_	106	Amicyanin {Paracoccus versutus (Thiobacillus versu	97.74
d1id2a_	106	Amicyanin {Paracoccus versutus (Thiobacillus versu	97.6
d2ccwa1	129	Azurin {Alcaligenes xylosoxidans, NCIMB (11015), d	97.53
d1cuoa_	129	Azurin {Methylomonas sp. j [TaxId: 32038]}	97.52
d2ccwa1	129	Azurin {Alcaligenes xylosoxidans, NCIMB (11015), d	97.4
d1cuoa_	129	Azurin {Methylomonas sp. j [TaxId: 32038]}	97.39
d1e30a_	153	Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920	96.99
d1e30a_	153	Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920	96.92
d1ibya_	112	Red copper protein nitrosocyanin {Nitrosomonas eur	96.92
d1ibya_	112	Red copper protein nitrosocyanin {Nitrosomonas eur	96.69
d1nwpa_	128	Azurin {Pseudomonas putida [TaxId: 303]}	96.31
d1nwpa_	128	Azurin {Pseudomonas putida [TaxId: 303]}	95.92
d1jzga_	128	Azurin {Pseudomonas aeruginosa [TaxId: 287]}	95.81
d1jzga_	128	Azurin {Pseudomonas aeruginosa [TaxId: 287]}	95.68
d1ikop_	141	Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId:	95.5
d1shxa1	138	Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]}	95.46
d1fwxa1	132	Nitrous oxide reductase, C-terminal domain {Paraco	95.4
d1kbva1	151	Nitrite reductase, NIR {Neisseria gonorrhoeae, Ani	95.27
d1fwxa1	132	Nitrous oxide reductase, C-terminal domain {Paraco	95.15
d1aoza1	129	Ascorbate oxidase {Zucchini (Cucurbita pepo var. m	94.82
d1kbva1	151	Nitrite reductase, NIR {Neisseria gonorrhoeae, Ani	94.72
d1oe2a1	159	Nitrite reductase, NIR {Alcaligenes xylosoxidans [	94.56
d1qnia1	131	Nitrous oxide reductase, C-terminal domain {Pseudo	94.49
d1qnia1	131	Nitrous oxide reductase, C-terminal domain {Pseudo	94.47
d1ikop_	141	Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId:	94.24
d2cuaa_	122	Cytochrome c oxidase {Thermus thermophilus, ba3 ty	94.11
d1aoza1	129	Ascorbate oxidase {Zucchini (Cucurbita pepo var. m	93.98
d1oe2a1	159	Nitrite reductase, NIR {Alcaligenes xylosoxidans [	93.74
d2cuaa_	122	Cytochrome c oxidase {Thermus thermophilus, ba3 ty	93.73
d1shxa1	138	Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]}	93.45
d1mzya1	153	Nitrite reductase, NIR {Rhodobacter sphaeroides [T	91.45
d1mzya1	153	Nitrite reductase, NIR {Rhodobacter sphaeroides [T	91.24
d1gyca1	130	Laccase {Trametes versicolor, laccase 2 [TaxId: 53	90.76
d2bw4a1	157	Nitrite reductase, NIR {Alcaligenes xylosoxidans [	90.0
d2bw4a1	157	Nitrite reductase, NIR {Alcaligenes xylosoxidans [	89.97
d1hfua1	131	Laccase {Inky cap fungus (Coprinus cinereus) [TaxI	89.97
d2q9oa1	162	Laccase {Melanocarpus albomyces [TaxId: 204285]}	89.67
d1gyca1	130	Laccase {Trametes versicolor, laccase 2 [TaxId: 53	87.3
d1hfua1	131	Laccase {Inky cap fungus (Coprinus cinereus) [TaxI	84.26
d1v10a1	136	Laccase {Rigidoporus lignosus [TaxId: 219653]}	83.48
d1kv7a1	140	multi-copper oxidase CueO {Escherichia coli [TaxId	80.27

>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Mavicyanin
species: Zucchini (Cucurbita pepo) [TaxId: 3663]

Probab=100.00  E-value=2.4e-35  Score=240.73  Aligned_cols=103  Identities=40%  Similarity=0.810  Sum_probs=97.7

Q ss_pred             ceeeeeeccCCcccCCCCCCCccccccCCceecCCEEEEEeCCCCceEEEEcccccCCCCCCCCCccCCCCCceEEcCCc
Q 018026          195 PATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTA  274 (362)
Q Consensus       195 ~~~~~VG~~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~  274 (362)
                      +++|+|||+.||+++.  ..+|+.|+++++|+|||+|+|+|++++|+|+||++++|+.|+..+++..+++|.+.|+|+++
T Consensus         2 at~~~VGg~~gW~~~~--~~~Y~~Wa~~~~f~vGD~l~F~y~~~~h~V~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~   79 (104)
T d1ws8a_           2 ATVHKVGDSTGWTTLV--PYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRP   79 (104)
T ss_dssp             CCEEETTGGGCSCSSS--CCCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCSSCSEEECSSEEEEECCSS
T ss_pred             CcEEEeCCcCccCcCC--CcCHHHHhhCCcCCCCCEEEEEECCCCceEEEECHHHhcCCcCCCccccccCCCeEEEEecC
Confidence            5799999999999865  35699999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccEEEEcCCCCCCCCCCeEEEEeeC
Q 018026          275 GEHYFFCTFPGHCSAGQKLAVNVTG  299 (362)
Q Consensus       275 G~~yFic~~~~HC~~GmKl~I~V~~  299 (362)
                      |++||||++++||++||||.|+|.+
T Consensus        80 g~~yF~C~~~~HC~~Gmkl~I~V~P  104 (104)
T d1ws8a_          80 GTFYFLCGIPGHCQLGQKVEIKVDP  104 (104)
T ss_dssp             EEEEEECCSTTTTTTTCEEEEEECC
T ss_pred             ccEEEECCCcchhhCCCEEEEEECC
Confidence            9999999999999999999999963

>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

Probab=100.00  E-value=6.1e-35  Score=234.41  Aligned_cols=95  Identities=40%  Similarity=0.869  Sum_probs=91.3

Q ss_pred             eeeeeccCCcccCCCCCCCccccccCCceecCCEEEEEeCCCCceEEEEcccccCCCCCCCCCccCCCCCceEEcCCccc
Q 018026          197 THVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGE  276 (362)
Q Consensus       197 ~~~VG~~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~  276 (362)
                      .|+|||+.||++      +|+.||++++|++||+|+|+|+++.|+|+||+|++|+.|+..+++..+++|++.|+|++ |+
T Consensus         2 ~y~VGg~~GW~~------~y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~Y~~C~~~~~~~~~~~G~~~v~L~~-G~   74 (96)
T d2cbpa_           2 VYVVGGSGGWTF------NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKLPK-GQ   74 (96)
T ss_dssp             EEETTGGGCSCS------SCTTTTTTCCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCCTTCEEECSSEEEEECCS-EE
T ss_pred             EEEcCCCCCCCc------CHHHHhCCCcEecCCEEEEecCCCCceEEEEChHHcCccCCCCCcccccCCCeEEEeCC-CC
Confidence            699999999986      49999999999999999999999999999999999999999999999999999999986 99


Q ss_pred             EEEEcCCCCCCCCCCeEEEEee
Q 018026          277 HYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       277 ~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      +||||+.++||++||||+|+|.
T Consensus        75 ~YFic~~~~hC~~G~Kl~V~Vl   96 (96)
T d2cbpa_          75 SYFICNFPGHCQSGMKIAVNAL   96 (96)
T ss_dssp             EEEECCSTTTGGGTCEEEEEEC
T ss_pred             CEEEeCCCCcCcCCCEEEEEEC
Confidence            9999999999999999999984

>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Mavicyanin
species: Zucchini (Cucurbita pepo) [TaxId: 3663]

Probab=100.00  E-value=5.4e-35  Score=238.63  Aligned_cols=102  Identities=42%  Similarity=0.854  Sum_probs=97.2

Q ss_pred             ceEEEecCCCCCcCCCCCCCCCCccccCceeeeCCEEEEeecCCCccEEEeCccccCCCCCCCCCCcCCCCCcEEEEeec
Q 018026           22 QTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTAS  101 (362)
Q Consensus        22 ~~~~~VGg~~GW~~~~~~~~~y~~Wa~~~~f~vGD~L~F~~~~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l~~~  101 (362)
                      +++|+|||+.||++++  ..+|+.|+++++|+|||+|+|+|.+++|+|+||++++|++|+..+++...++|.+.|+|+++
T Consensus         2 at~~~VGg~~gW~~~~--~~~Y~~Wa~~~~f~vGD~l~F~y~~~~h~V~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~   79 (104)
T d1ws8a_           2 ATVHKVGDSTGWTTLV--PYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRP   79 (104)
T ss_dssp             CCEEETTGGGCSCSSS--CCCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCSSCSEEECSSEEEEECCSS
T ss_pred             CcEEEeCCcCccCcCC--CcCHHHHhhCCcCCCCCEEEEEECCCCceEEEECHHHhcCCcCCCccccccCCCeEEEEecC
Confidence            3799999999999865  46799999999999999999999999999999999999999999999889999999999999


Q ss_pred             cceEEEcCCCCCCCCCCeeeEEee
Q 018026          102 GPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus       102 G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      |++||||++++||++||||+|+|.
T Consensus        80 g~~yF~C~~~~HC~~Gmkl~I~V~  103 (104)
T d1ws8a_          80 GTFYFLCGIPGHCQLGQKVEIKVD  103 (104)
T ss_dssp             EEEEEECCSTTTTTTTCEEEEEEC
T ss_pred             ccEEEECCCcchhhCCCEEEEEEC
Confidence            999999999999999999999996

>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

Probab=100.00  E-value=1.1e-34  Score=232.98  Aligned_cols=95  Identities=38%  Similarity=0.774  Sum_probs=91.0

Q ss_pred             EEEecCCCCCcCCCCCCCCCCccccCceeeeCCEEEEeecCCCccEEEeCccccCCCCCCCCCCcCCCCCcEEEEeeccc
Q 018026           24 RHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGP  103 (362)
Q Consensus        24 ~~~VGg~~GW~~~~~~~~~y~~Wa~~~~f~vGD~L~F~~~~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l~~~G~  103 (362)
                      .|+|||+.||++      +|+.||++++|++||+|+|+|+++.|+|+||+|++|++|+.++++..+++|++.|+|++ |+
T Consensus         2 ~y~VGg~~GW~~------~y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~Y~~C~~~~~~~~~~~G~~~v~L~~-G~   74 (96)
T d2cbpa_           2 VYVVGGSGGWTF------NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKLPK-GQ   74 (96)
T ss_dssp             EEETTGGGCSCS------SCTTTTTTCCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCCTTCEEECSSEEEEECCS-EE
T ss_pred             EEEcCCCCCCCc------CHHHHhCCCcEecCCEEEEecCCCCceEEEEChHHcCccCCCCCcccccCCCeEEEeCC-CC
Confidence            699999999986      49999999999999999999999999999999999999999999999999999999986 99


Q ss_pred             eEEEcCCCCCCCCCCeeeEEee
Q 018026          104 HYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus       104 ~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      +||||++++||++||||+|+|+
T Consensus        75 ~YFic~~~~hC~~G~Kl~V~Vl   96 (96)
T d2cbpa_          75 SYFICNFPGHCQSGMKIAVNAL   96 (96)
T ss_dssp             EEEECCSTTTGGGTCEEEEEEC
T ss_pred             CEEEeCCCCcCcCCCEEEEEEC
Confidence            9999999999999999999985

>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Stellacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

Probab=99.98  E-value=1.4e-33  Score=232.41  Aligned_cols=106  Identities=42%  Similarity=0.805  Sum_probs=95.9

Q ss_pred             CceeeeeeccCCcccCCCCCCCccccccCCceecCCEEEEEeCCCCceEEEE-cccccCCCCCCCCCccCC-CCCceEEc
Q 018026          194 QPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEV-TKAAYDSCNSSSTISKST-NPPTRITL  271 (362)
Q Consensus       194 ~~~~~~VG~~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~hsV~~v-~~~~y~~C~~~~~~~~~~-~G~~~v~l  271 (362)
                      ++++|+|||..||+++.+ ..+|++|+++++|+|||+|+|+|+.++|+|+|| ++++|+.|+..+++.... .+...++|
T Consensus         2 ~at~~~VGg~~gW~~~~~-~~~Y~~Wa~~~~f~vGD~l~F~~~~~~H~V~~v~~~~~y~~c~~~~~~~~~~~~~~~~~~l   80 (110)
T d1jera_           2 QSTVHIVGDNTGWSVPSS-PNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIERL   80 (110)
T ss_dssp             CCCEEETTGGGCSSCCSS-TTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSCEEEEC
T ss_pred             cceEEEeCCCCCcccCCC-cchhhhhhcCCcEeCCCEEEEEeCCCCceEEEECCcccccccccCCccccccCCCcEEEEe
Confidence            568999999999999764 346999999999999999999999999999999 699999999999887654 44567899


Q ss_pred             CCcccEEEEcCCCCCCCCCCeEEEEeeCC
Q 018026          272 GTAGEHYFFCTFPGHCSAGQKLAVNVTGG  300 (362)
Q Consensus       272 ~~~G~~yFic~~~~HC~~GmKl~I~V~~~  300 (362)
                      +++|++||||++++||++||||+|+|+++
T Consensus        81 ~~~G~~yF~C~~~~HC~~Gmk~~I~V~~a  109 (110)
T d1jera_          81 DELGMHYFVCTVGTHCSNGQKLSINVVAA  109 (110)
T ss_dssp             CSSEEEEEECCSTTTGGGTCEEEEEEECC
T ss_pred             cCCccEEEECCCcChhhcCCEEEEEEecC
Confidence            99999999999999999999999999875

>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Stellacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

Probab=99.97  E-value=5.1e-33  Score=229.05  Aligned_cols=105  Identities=48%  Similarity=0.867  Sum_probs=94.9

Q ss_pred             ceEEEecCCCCCcCCCCCCCCCCccccCceeeeCCEEEEeecCCCccEEEe-CccccCCCCCCCCCCcCCCC-CcEEEEe
Q 018026           22 QTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRV-TQSSFNACNTTSPLSRTTNS-PASVTLT   99 (362)
Q Consensus        22 ~~~~~VGg~~GW~~~~~~~~~y~~Wa~~~~f~vGD~L~F~~~~~~h~V~~V-~~~~y~~C~~~~~i~~~~~G-~~~v~l~   99 (362)
                      +++|+|||..||+++.+ ...|+.|+++++|+|||+|+|+|.+++|+|+|| ++++|++|+..+++....++ ...++|+
T Consensus         3 at~~~VGg~~gW~~~~~-~~~Y~~Wa~~~~f~vGD~l~F~~~~~~H~V~~v~~~~~y~~c~~~~~~~~~~~~~~~~~~l~   81 (110)
T d1jera_           3 STVHIVGDNTGWSVPSS-PNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIERLD   81 (110)
T ss_dssp             CCEEETTGGGCSSCCSS-TTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSCEEEECC
T ss_pred             ceEEEeCCCCCcccCCC-cchhhhhhcCCcEeCCCEEEEEeCCCCceEEEECCcccccccccCCccccccCCCcEEEEec
Confidence            48999999999999764 446999999999999999999999999999999 69999999999988765544 5678999


Q ss_pred             eccceEEEcCCCCCCCCCCeeeEEeecC
Q 018026          100 ASGPHYFICSFPGHCLGGQKLAINVSAR  127 (362)
Q Consensus       100 ~~G~~yFic~~~~HC~~Gmk~~I~V~~~  127 (362)
                      ++|++||||++++||++||||+|+|.++
T Consensus        82 ~~G~~yF~C~~~~HC~~Gmk~~I~V~~a  109 (110)
T d1jera_          82 ELGMHYFVCTVGTHCSNGQKLSINVVAA  109 (110)
T ss_dssp             SSEEEEEECCSTTTGGGTCEEEEEEECC
T ss_pred             CCccEEEECCCcChhhcCCEEEEEEecC
Confidence            9999999999999999999999999864

>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.96  E-value=1.6e-30  Score=206.82  Aligned_cols=90  Identities=39%  Similarity=0.792  Sum_probs=84.3

Q ss_pred             eeeeeccCCcccCCCCCCCccccccCCceecCCEEEEEeCCCCceEEEEcccccCCCCCCCCCccCCCCCceEEcCCccc
Q 018026          197 THVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGE  276 (362)
Q Consensus       197 ~~~VG~~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~  276 (362)
                      .|.|    ||++       |.+||++++|+|||+|+|+|++++|+|+||++++|+.|+..+++..+++|++.|+|++ |+
T Consensus         2 ~y~v----GW~~-------~~~Wa~~~~F~vGD~LvF~y~~~~h~V~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~-g~   69 (91)
T d1f56a_           2 VYNI----GWSF-------NVNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLTR-GQ   69 (91)
T ss_dssp             EEEE----ECSS-------SCBSCTTCCBCTTCEEEEECCBTTBCEEEECHHHHHTTCCCTTCEEECSSEEEEECCS-EE
T ss_pred             EEcc----CCcc-------ccccccCCCCcCCCEEEEEEcCCCCEEEEECHHHhCcCCCCCCcccccCCCeEEEeCC-CC
Confidence            4666    4975       7779999999999999999999999999999999999999999999999999999975 99


Q ss_pred             EEEEcCCCCCCCCCCeEEEEee
Q 018026          277 HYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       277 ~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      +||||++++||++||||+|+|+
T Consensus        70 ~yfic~~~~HC~~Gmkl~I~V~   91 (91)
T d1f56a_          70 NYFICSFPGHCGGGMKIAINAK   91 (91)
T ss_dssp             EEEECCSTTTTTTTCEEEEEEC
T ss_pred             eEEEeCCCCcCccCCEEEEEEC
Confidence            9999999999999999999985

>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.96  E-value=9.2e-30  Score=202.44  Aligned_cols=90  Identities=38%  Similarity=0.761  Sum_probs=83.8

Q ss_pred             EEEecCCCCCcCCCCCCCCCCccccCceeeeCCEEEEeecCCCccEEEeCccccCCCCCCCCCCcCCCCCcEEEEeeccc
Q 018026           24 RHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGP  103 (362)
Q Consensus        24 ~~~VGg~~GW~~~~~~~~~y~~Wa~~~~f~vGD~L~F~~~~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l~~~G~  103 (362)
                      .|.||    |++       |.+||++++|+|||+|+|+|.+++|+|+||++++|+.|+..+++..+++|.+.|+|+ +|+
T Consensus         2 ~y~vG----W~~-------~~~Wa~~~~F~vGD~LvF~y~~~~h~V~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~-~g~   69 (91)
T d1f56a_           2 VYNIG----WSF-------NVNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLT-RGQ   69 (91)
T ss_dssp             EEEEE----CSS-------SCBSCTTCCBCTTCEEEEECCBTTBCEEEECHHHHHTTCCCTTCEEECSSEEEEECC-SEE
T ss_pred             EEccC----Ccc-------ccccccCCCCcCCCEEEEEEcCCCCEEEEECHHHhCcCCCCCCcccccCCCeEEEeC-CCC
Confidence            46664    986       567999999999999999999999999999999999999999999999999999997 599


Q ss_pred             eEEEcCCCCCCCCCCeeeEEee
Q 018026          104 HYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus       104 ~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      +||||++++||++||||+|+|.
T Consensus        70 ~yfic~~~~HC~~Gmkl~I~V~   91 (91)
T d1f56a_          70 NYFICSFPGHCGGGMKIAINAK   91 (91)
T ss_dssp             EEEECCSTTTTTTTCEEEEEEC
T ss_pred             eEEEeCCCCcCccCCEEEEEEC
Confidence            9999999999999999999984

>d1bypa_ b.6.1.1 (A:) Plastocyanin {White campion (Silene pratensis) [TaxId: 52853]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: White campion (Silene pratensis) [TaxId: 52853]

Probab=98.98  E-value=5.1e-10  Score=87.90  Aligned_cols=87  Identities=23%  Similarity=0.324  Sum_probs=57.3

Q ss_pred             EEEecCCCC-CcCCCCCCCCCCccccCceeeeCCEEEEeecCCC-ccEEEeCccccCCCCCCC---------CCCcCCCC
Q 018026           24 RHVVGDALG-WIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGN-HDVTRVTQSSFNACNTTS---------PLSRTTNS   92 (362)
Q Consensus        24 ~~~VGg~~G-W~~~~~~~~~y~~Wa~~~~f~vGD~L~F~~~~~~-h~V~~V~~~~y~~C~~~~---------~i~~~~~G   92 (362)
                      +++||.+.| -.+.+          +..++++||+|+|.+..+. |++.. +...  .+....         ........
T Consensus         2 eV~vg~~~g~~~F~P----------~~i~v~~GdtV~f~n~~~~~h~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~   68 (99)
T d1bypa_           2 EVLLGSSDGGLAFVP----------SDLSIASGEKITFKNNAGFPHNDLF-DKKE--VPAGVDVTKISMPEEDLLNAPGE   68 (99)
T ss_dssp             EEEESCTTSCCSEES----------SEEEECTTEEEEEEECSSCCBCCEE-CTTS--SCTTCCHHHHSCCTTCCBCSTTC
T ss_pred             EEEEEecCCceEEcC----------CEEEECCCCEEEEEECCCCceeEEE-ecCC--CCCccccccCcccccccccCCCc
Confidence            678886533 44433          7889999999999987654 55543 2221  111110         00111122


Q ss_pred             CcEEEEeeccceEEEcCCCCCCCCCCeeeEEee
Q 018026           93 PASVTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        93 ~~~v~l~~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      ...++++++|.|||+|..  ||+.||+..|.|.
T Consensus        69 ~~~~tf~~~G~y~y~C~~--H~~~GM~G~I~V~   99 (99)
T d1bypa_          69 EYSVTLTEKGTYKFYCAP--HAGAGMVGKVTVN   99 (99)
T ss_dssp             EEEEEECSCEEEEEECGG--GTTTTCEEEEEEC
T ss_pred             eEEEEecCCceEEEEECc--CCCCCCEEEEEEC
Confidence            357888999999999986  9999999999984

>d1bypa_ b.6.1.1 (A:) Plastocyanin {White campion (Silene pratensis) [TaxId: 52853]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: White campion (Silene pratensis) [TaxId: 52853]

Probab=98.95  E-value=3.8e-10  Score=88.65  Aligned_cols=88  Identities=19%  Similarity=0.333  Sum_probs=58.0

Q ss_pred             eeeeeccCCcccCCCCCCCccccccCCceecCCEEEEEeCCCC-ceEEEEcccccCCCCCCC---------CCccCCCCC
Q 018026          197 THVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARV-HDVVEVTKAAYDSCNSSS---------TISKSTNPP  266 (362)
Q Consensus       197 ~~~VG~~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~-hsV~~v~~~~y~~C~~~~---------~~~~~~~G~  266 (362)
                      +++||.+.|       ...|+.  +.+++++||+|+|.+..+. |++. ++...  .+....         .........
T Consensus         2 eV~vg~~~g-------~~~F~P--~~i~v~~GdtV~f~n~~~~~h~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   69 (99)
T d1bypa_           2 EVLLGSSDG-------GLAFVP--SDLSIASGEKITFKNNAGFPHNDL-FDKKE--VPAGVDVTKISMPEEDLLNAPGEE   69 (99)
T ss_dssp             EEEESCTTS-------CCSEES--SEEEECTTEEEEEEECSSCCBCCE-ECTTS--SCTTCCHHHHSCCTTCCBCSTTCE
T ss_pred             EEEEEecCC-------ceEEcC--CEEEECCCCEEEEEECCCCceeEE-EecCC--CCCccccccCcccccccccCCCce
Confidence            678886543       123555  7799999999999986654 5554 32221  111111         011112223


Q ss_pred             ceEEcCCcccEEEEcCCCCCCCCCCeEEEEee
Q 018026          267 TRITLGTAGEHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       267 ~~v~l~~~G~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      .+++++++|.|||+|..  ||+.||+..|.|.
T Consensus        70 ~~~tf~~~G~y~y~C~~--H~~~GM~G~I~V~   99 (99)
T d1bypa_          70 YSVTLTEKGTYKFYCAP--HAGAGMVGKVTVN   99 (99)
T ss_dssp             EEEEECSCEEEEEECGG--GTTTTCEEEEEEC
T ss_pred             EEEEecCCceEEEEECc--CCCCCCEEEEEEC
Confidence            57889999999999985  9999999999984

>d1iuza_ b.6.1.1 (A:) Plastocyanin {Ulva pertusa, a sea lettuce [TaxId: 3120]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Ulva pertusa, a sea lettuce [TaxId: 3120]

Probab=98.89  E-value=1.3e-09  Score=85.45  Aligned_cols=91  Identities=21%  Similarity=0.306  Sum_probs=59.8

Q ss_pred             ceeeeeeccCCcccCCCCCCCccccccCCceecCCEEEEEeCCCC-ceEEEEcccccCCCCCCCCC-----ccCC-CCCc
Q 018026          195 PATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARV-HDVVEVTKAAYDSCNSSSTI-----SKST-NPPT  267 (362)
Q Consensus       195 ~~~~~VG~~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~-hsV~~v~~~~y~~C~~~~~~-----~~~~-~G~~  267 (362)
                      ++.+.||.+.|       ...|+.  +.+++++||+|.|.+..+. |+++.....  ..+......     .... ....
T Consensus         1 a~~V~vg~~~g-------~~~F~P--~~i~i~~GdtV~f~n~~~~~h~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   69 (98)
T d1iuza_           1 AQIVKLGGDDG-------SLAFVP--SKISVAAGEAIEFVNNAGFPHNIVFDEDA--VPAGVDADAISYDDYLNSKGETV   69 (98)
T ss_dssp             CEEEEESCTTS-------CCSEES--SEEEECTTCEEEEEECSSCCEEEEECTTS--SCTTCCHHHHCEEEEECSTTCEE
T ss_pred             CeEEEEecCCC-------cEEEeC--CEEEECCCCEEEEEECCCCcccEEEeCCC--cccccccccccccCcccCCCcEE
Confidence            35788887653       223666  7799999999999886554 666442211  111111100     0111 2235


Q ss_pred             eEEcCCcccEEEEcCCCCCCCCCCeEEEEee
Q 018026          268 RITLGTAGEHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       268 ~v~l~~~G~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      .++++++|.|||+|..  ||..||+..|+|.
T Consensus        70 ~~~f~~~G~y~y~C~~--H~~~GM~G~I~Ve   98 (98)
T d1iuza_          70 VRKLSTPGVYGVYCEP--HAGAGMKMTITVQ   98 (98)
T ss_dssp             EEECCSCEEEEEECTT--TGGGTCEEEEEEC
T ss_pred             EEecCCCceEEEEeCC--CccCCCeEEEEEC
Confidence            6889999999999985  9999999999984

>d2plta_ b.6.1.1 (A:) Plastocyanin {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.88  E-value=2.1e-09  Score=84.07  Aligned_cols=91  Identities=19%  Similarity=0.253  Sum_probs=58.9

Q ss_pred             eeeeeeccCCcccCCCCCCCccccccCCceecCCEEEEEeCCCCceEEEEcccccCCCCCCCC------CccCCCCCceE
Q 018026          196 ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSST------ISKSTNPPTRI  269 (362)
Q Consensus       196 ~~~~VG~~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~hsV~~v~~~~y~~C~~~~~------~~~~~~G~~~v  269 (362)
                      .++.||.+.|       ...|+.  +.+++++||+|.|.+....|..+...... ..+.....      ...-......+
T Consensus         2 ~TV~vg~~~g-------~~~F~P--~~i~v~~GdtV~f~n~~~~~h~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~   71 (98)
T d2plta_           2 ATVKLGADSG-------ALEFVP--KTLTIKSGETVNFVNNAGFPHNIVFDEDA-IPSGVNADAISRDDYLNAPGETYSV   71 (98)
T ss_dssp             EEEEESCTTC-------CSSEES--SEEEECTTCEEEEEECSSCCEEEEECGGG-SCTTCCHHHHCEEEEECSTTCEEEE
T ss_pred             eEEEEeeCCC-------ceEEeC--CEEEECCCCEEEEEECCCCceeEEEecCC-ccccccCCcccccccccCCCceEEE
Confidence            4677875432       233666  78999999999998866554444333222 12221110      01112223578


Q ss_pred             EcCCcccEEEEcCCCCCCCCCCeEEEEee
Q 018026          270 TLGTAGEHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       270 ~l~~~G~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      +++++|.|||+|..  ||+.||+..|.|.
T Consensus        72 tf~~~G~y~y~C~~--H~~~GM~G~I~Ve   98 (98)
T d2plta_          72 KLTAAGEYGYYCEP--HQGAGMVGKIIVQ   98 (98)
T ss_dssp             ECCSCEEEEEECGG--GGGGTCEEEEEEC
T ss_pred             EecCCceEEEEeCc--CCCCCCEEEEEEC
Confidence            88999999999985  9999999999984

>d1iuza_ b.6.1.1 (A:) Plastocyanin {Ulva pertusa, a sea lettuce [TaxId: 3120]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Ulva pertusa, a sea lettuce [TaxId: 3120]

Probab=98.86  E-value=1.5e-09  Score=84.98  Aligned_cols=90  Identities=17%  Similarity=0.250  Sum_probs=57.5

Q ss_pred             eEEEecCCCCCcCCCCCCCCCCccccCceeeeCCEEEEeecCCC-ccEEEeCccccCCCCCCCCC---C---cCCCCCcE
Q 018026           23 TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGN-HDVTRVTQSSFNACNTTSPL---S---RTTNSPAS   95 (362)
Q Consensus        23 ~~~~VGg~~GW~~~~~~~~~y~~Wa~~~~f~vGD~L~F~~~~~~-h~V~~V~~~~y~~C~~~~~i---~---~~~~G~~~   95 (362)
                      +.+.||.+.|       ...|.+  +..++++||+|+|.+..+. |+++.. .. ...+......   .   ........
T Consensus         2 ~~V~vg~~~g-------~~~F~P--~~i~i~~GdtV~f~n~~~~~h~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~   70 (98)
T d1iuza_           2 QIVKLGGDDG-------SLAFVP--SKISVAAGEAIEFVNNAGFPHNIVFD-ED-AVPAGVDADAISYDDYLNSKGETVV   70 (98)
T ss_dssp             EEEEESCTTS-------CCSEES--SEEEECTTCEEEEEECSSCCEEEEEC-TT-SSCTTCCHHHHCEEEEECSTTCEEE
T ss_pred             eEEEEecCCC-------cEEEeC--CEEEECCCCEEEEEECCCCcccEEEe-CC-CcccccccccccccCcccCCCcEEE
Confidence            5677887643       122333  7889999999999887554 665432 11 1111111100   0   01112256


Q ss_pred             EEEeeccceEEEcCCCCCCCCCCeeeEEee
Q 018026           96 VTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        96 v~l~~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      ++++++|.|||+|..  ||..||+..|.|.
T Consensus        71 ~~f~~~G~y~y~C~~--H~~~GM~G~I~Ve   98 (98)
T d1iuza_          71 RKLSTPGVYGVYCEP--HAGAGMKMTITVQ   98 (98)
T ss_dssp             EECCSCEEEEEECTT--TGGGTCEEEEEEC
T ss_pred             EecCCCceEEEEeCC--CccCCCeEEEEEC
Confidence            888999999999985  9999999999984

>d2cj3a1 b.6.1.1 (A:1-105) Plastocyanin {Anabaena variabilis [TaxId: 1172]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Anabaena variabilis [TaxId: 1172]

Probab=98.83  E-value=3.2e-09  Score=83.92  Aligned_cols=93  Identities=22%  Similarity=0.218  Sum_probs=56.2

Q ss_pred             eeeeeeccCCcccCCCCCCCccccccCCceecCCEEEEEeCCCCceEEEEcccccCCCCCCC------CCccCCC-CCce
Q 018026          196 ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSS------TISKSTN-PPTR  268 (362)
Q Consensus       196 ~~~~VG~~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~hsV~~v~~~~y~~C~~~~------~~~~~~~-G~~~  268 (362)
                      .++.||.+.|       ...|+.  +..++++||+|.|.+..+.|..+.+............      ....... ....
T Consensus         3 ~tV~v~~~~g-------~~~F~P--~~i~v~~GdtV~f~n~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (105)
T d2cj3a1           3 YTVKLGSDKG-------LLVFEP--AKLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAKSLSHKQLLMSPGQSTS   73 (105)
T ss_dssp             EEEEESCTTC-------CSSEES--SEEEECTTCEEEEEECSSCCEEEEECSSSSTTCCHHHHHHHCEEEEECSTTCEEE
T ss_pred             EEEEEEeCCC-------ceEEeC--CEEEECCCCEEEEEECCCCceeeEeccCCCCccccccCCcccccccccCCCcceE
Confidence            4566765543       123565  7789999999999887665444433332222211100      0001111 1223


Q ss_pred             EEc---CCcccEEEEcCCCCCCCCCCeEEEEeeC
Q 018026          269 ITL---GTAGEHYFFCTFPGHCSAGQKLAVNVTG  299 (362)
Q Consensus       269 v~l---~~~G~~yFic~~~~HC~~GmKl~I~V~~  299 (362)
                      +++   +++|.|||+|..  ||++||+..|.|.+
T Consensus        74 ~~f~~~~~~G~y~y~C~~--H~~~GM~G~I~V~g  105 (105)
T d2cj3a1          74 TTFPADAPAGEYTFYCEP--HRGAGMVGKITVAG  105 (105)
T ss_dssp             EECCTTCCSEEEEEECTT--TGGGTCEEEEEECC
T ss_pred             EEEEeccCCceEEEEeCC--CcCCCcEEEEEEeC
Confidence            433   578999999985  99999999999963

>d1kdja_ b.6.1.1 (A:) Plastocyanin {Fern (Adiantum capillus-veneris) [TaxId: 13818]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Fern (Adiantum capillus-veneris) [TaxId: 13818]

Probab=98.79  E-value=2.9e-09  Score=83.76  Aligned_cols=91  Identities=22%  Similarity=0.334  Sum_probs=58.8

Q ss_pred             eeeeeccCCcccCCCCCCCccccccCCceecCCEEEEEeCCCC-ceEEEEcccccCCCCC---------CCCCccCCCCC
Q 018026          197 THVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARV-HDVVEVTKAAYDSCNS---------SSTISKSTNPP  266 (362)
Q Consensus       197 ~~~VG~~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~-hsV~~v~~~~y~~C~~---------~~~~~~~~~G~  266 (362)
                      ++.||.+.|       ...|+.  +..++++||+|+|.++.+. |+++......-+....         .+.........
T Consensus         2 ~V~vg~~~g-------~~~F~P--~~l~v~~GdtV~f~n~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (102)
T d1kdja_           2 KVEVGDEVG-------NFKFYP--DSITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDLLSEDEPS   72 (102)
T ss_dssp             EEEESCTTC-------CCCEES--SEEEECTTCCEEEEECSSSCBCCEECCCTTCCHHHHHHHHHTSCCTTCCBBTTBCE
T ss_pred             EEEEeecCC-------ceEEeC--CEEEECCCCEEEEEECCCCceeEEEecCCCCCcccccccccCcccccccccCCccE
Confidence            567876543       223555  7799999999999987654 6665432221111100         00111112223


Q ss_pred             ceEEcCCcccEEEEcCCCCCCCCCCeEEEEee
Q 018026          267 TRITLGTAGEHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       267 ~~v~l~~~G~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      ..++++++|.|||+|..  ||+.||+..|.|.
T Consensus        73 ~~~~f~~~G~y~Y~C~~--H~~~GM~G~I~Ve  102 (102)
T d1kdja_          73 FKAKVSTPGTYTFYCTP--HKSANMKGTLTVK  102 (102)
T ss_dssp             EEECCCSCEEEEEECST--TGGGTCEEEEEEC
T ss_pred             EEEeeCCCceEEEEecC--CcccCCeEEEEEC
Confidence            56888999999999985  9999999999984

>d2cj3a1 b.6.1.1 (A:1-105) Plastocyanin {Anabaena variabilis [TaxId: 1172]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Anabaena variabilis [TaxId: 1172]

Probab=98.76  E-value=7.4e-09  Score=81.72  Aligned_cols=76  Identities=21%  Similarity=0.132  Sum_probs=47.0

Q ss_pred             cCceeeeCCEEEEeecCCCccEEEeCccccCCCCCCC------CCCcCCC-CCcEEEE---eeccceEEEcCCCCCCCCC
Q 018026           48 ANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTS------PLSRTTN-SPASVTL---TASGPHYFICSFPGHCLGG  117 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~~~h~V~~V~~~~y~~C~~~~------~i~~~~~-G~~~v~l---~~~G~~yFic~~~~HC~~G  117 (362)
                      +..++++||+|.|.+..+.|..+.+............      ....... ....+++   +++|.|||+|..  ||+.|
T Consensus        19 ~~i~v~~GdtV~f~n~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~G~y~y~C~~--H~~~G   96 (105)
T d2cj3a1          19 AKLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAKSLSHKQLLMSPGQSTSTTFPADAPAGEYTFYCEP--HRGAG   96 (105)
T ss_dssp             SEEEECTTCEEEEEECSSCCEEEEECSSSSTTCCHHHHHHHCEEEEECSTTCEEEEECCTTCCSEEEEEECTT--TGGGT
T ss_pred             CEEEECCCCEEEEEECCCCceeeEeccCCCCccccccCCcccccccccCCCcceEEEEEeccCCceEEEEeCC--CcCCC
Confidence            7889999999999887655444333222221111000      0001111 1234443   468999999986  99999


Q ss_pred             CeeeEEee
Q 018026          118 QKLAINVS  125 (362)
Q Consensus       118 mk~~I~V~  125 (362)
                      |+..|.|.
T Consensus        97 M~G~I~V~  104 (105)
T d2cj3a1          97 MVGKITVA  104 (105)
T ss_dssp             CEEEEEEC
T ss_pred             cEEEEEEe
Confidence            99999996

>d2plta_ b.6.1.1 (A:) Plastocyanin {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.74  E-value=4.1e-09  Score=82.29  Aligned_cols=90  Identities=21%  Similarity=0.192  Sum_probs=56.7

Q ss_pred             eEEEecCCCCCcCCCCCCCCCCccccCceeeeCCEEEEeecCCCccEEEeCccccCCCCCCC-CC------CcCCCCCcE
Q 018026           23 TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTS-PL------SRTTNSPAS   95 (362)
Q Consensus        23 ~~~~VGg~~GW~~~~~~~~~y~~Wa~~~~f~vGD~L~F~~~~~~h~V~~V~~~~y~~C~~~~-~i------~~~~~G~~~   95 (362)
                      .++.||.+.|       ...|++  +..++++||+|.|.+....|..+.....  ..|.... ..      .........
T Consensus         2 ~TV~vg~~~g-------~~~F~P--~~i~v~~GdtV~f~n~~~~~h~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~   70 (98)
T d2plta_           2 ATVKLGADSG-------ALEFVP--KTLTIKSGETVNFVNNAGFPHNIVFDED--AIPSGVNADAISRDDYLNAPGETYS   70 (98)
T ss_dssp             EEEEESCTTC-------CSSEES--SEEEECTTCEEEEEECSSCCEEEEECGG--GSCTTCCHHHHCEEEEECSTTCEEE
T ss_pred             eEEEEeeCCC-------ceEEeC--CEEEECCCCEEEEEECCCCceeEEEecC--CccccccCCcccccccccCCCceEE
Confidence            3566775432       222333  7889999999999877655444332222  1222211 00      011122357


Q ss_pred             EEEeeccceEEEcCCCCCCCCCCeeeEEee
Q 018026           96 VTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        96 v~l~~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      ++++++|.|||+|..  ||+.||+..|.|.
T Consensus        71 ~tf~~~G~y~y~C~~--H~~~GM~G~I~Ve   98 (98)
T d2plta_          71 VKLTAAGEYGYYCEP--HQGAGMVGKIIVQ   98 (98)
T ss_dssp             EECCSCEEEEEECGG--GGGGTCEEEEEEC
T ss_pred             EEecCCceEEEEeCc--CCCCCCEEEEEEC
Confidence            888999999999975  9999999999984

>d1kdja_ b.6.1.1 (A:) Plastocyanin {Fern (Adiantum capillus-veneris) [TaxId: 13818]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Fern (Adiantum capillus-veneris) [TaxId: 13818]

Probab=98.73  E-value=4.8e-09  Score=82.43  Aligned_cols=90  Identities=17%  Similarity=0.285  Sum_probs=57.6

Q ss_pred             EEEecCCC-CCcCCCCCCCCCCccccCceeeeCCEEEEeecCCC-ccEEEeCccccCCCCC---------CCCCCcCCCC
Q 018026           24 RHVVGDAL-GWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGN-HDVTRVTQSSFNACNT---------TSPLSRTTNS   92 (362)
Q Consensus        24 ~~~VGg~~-GW~~~~~~~~~y~~Wa~~~~f~vGD~L~F~~~~~~-h~V~~V~~~~y~~C~~---------~~~i~~~~~G   92 (362)
                      ++.||.+. +..+.+          +..++++||+|+|.+..+. |+++.......+....         ..........
T Consensus         2 ~V~vg~~~g~~~F~P----------~~l~v~~GdtV~f~n~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (102)
T d1kdja_           2 KVEVGDEVGNFKFYP----------DSITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDLLSEDEP   71 (102)
T ss_dssp             EEEESCTTCCCCEES----------SEEEECTTCCEEEEECSSSCBCCEECCCTTCCHHHHHHHHHTSCCTTCCBBTTBC
T ss_pred             EEEEeecCCceEEeC----------CEEEECCCCEEEEEECCCCceeEEEecCCCCCcccccccccCcccccccccCCcc
Confidence            56777653 333333          7889999999999887654 7665532222111110         0011111122


Q ss_pred             CcEEEEeeccceEEEcCCCCCCCCCCeeeEEee
Q 018026           93 PASVTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        93 ~~~v~l~~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      ...++++++|.|||+|..  ||+.||+..|.|.
T Consensus        72 ~~~~~f~~~G~y~Y~C~~--H~~~GM~G~I~Ve  102 (102)
T d1kdja_          72 SFKAKVSTPGTYTFYCTP--HKSANMKGTLTVK  102 (102)
T ss_dssp             EEEECCCSCEEEEEECST--TGGGTCEEEEEEC
T ss_pred             EEEEeeCCCceEEEEecC--CcccCCeEEEEEC
Confidence            356778899999999986  9999999999984

>d1paza_ b.6.1.1 (A:) Pseudoazurin {Alcaligenes faecalis, strain s-6 [TaxId: 511]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Alcaligenes faecalis, strain s-6 [TaxId: 511]

Probab=98.70  E-value=1.1e-08  Score=83.69  Aligned_cols=75  Identities=21%  Similarity=0.234  Sum_probs=55.7

Q ss_pred             cCceeeeCCEEEEeecCCCccEEEeCccccCCCCCCCCCCcCCCCCcEEEEeeccceEEEcCCCCCCCCCCeeeEEeecC
Q 018026           48 ANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSAR  127 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l~~~G~~yFic~~~~HC~~Gmk~~I~V~~~  127 (362)
                      +..++++||+|.|.+..+.|+|..+.....+.=.   ...........++++.+|.|+|+|..  ||..||+..|.|...
T Consensus        21 ~~itI~~GDTV~f~n~~~~Hnv~~~~~~~~~~~~---~~~~~~~~~~s~tF~~~G~y~Y~Ctp--H~~~GM~G~I~Vg~~   95 (120)
T d1paza_          21 AYIKANPGDTVTFIPVDKGHNVESIKDMIPEGAE---KFKSKINENYVLTVTQPGAYLVKCTP--HYAMGMIALIAVGDS   95 (120)
T ss_dssp             SEEEECTTCEEEEEESSSSCCCEECTTCSCTTCC---CCBCCTTCCEEEECCSCEEEEEECTT--TGGGTCEEEEEESSS
T ss_pred             CEEEECCCCEEEEeeCCCcceEeeccccCccccc---ccccccCceEEEEecCCCeEEEEEee--CCCCCCEEEEEECCC
Confidence            7789999999999999889999765333222100   00011123467999999999999986  999999999999865

>d1adwa_ b.6.1.1 (A:) Pseudoazurin {Thiosphaera pantotropha [TaxId: 82367]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Thiosphaera pantotropha [TaxId: 82367]

Probab=98.70  E-value=1.4e-08  Score=83.15  Aligned_cols=75  Identities=19%  Similarity=0.172  Sum_probs=54.9

Q ss_pred             cCceeeeCCEEEEeecCCCccEEEeCccccCCCCCCCCCCcCCCCCcEEEEeeccceEEEcCCCCCCCCCCeeeEEeecC
Q 018026           48 ANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSAR  127 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l~~~G~~yFic~~~~HC~~Gmk~~I~V~~~  127 (362)
                      +..++++||+|+|.+..+.|.+..+....  .... ............++++++|.|+|+|..  ||..||+..|.|...
T Consensus        21 ~~itI~~GdtV~f~n~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~tF~~~G~Y~Y~C~p--H~~~GM~G~I~Vg~~   95 (123)
T d1adwa_          21 AFVRAEPGDVINFVPTDKSHNVEAIKEIL--PEGV-ESFKSKINESYTLTVTEPGLYGVKCTP--HFGMGMVGLVQVGDA   95 (123)
T ss_dssp             SEEEECTTEEEEEEESSSSCCCEECTTSC--CTTC-CCCBCCTTCCEEEEECSCEEEEEECGG--GGGGTCEEEEEESSS
T ss_pred             CEEEECCCCEEEEEeCCCCcceecccCcc--cccc-ccccccCCcceEEeccCCCeEEEEEcc--CCCCCCEEEEEECCC
Confidence            78899999999999998888886542211  1111 111112223368999999999999987  999999999999764

>d2jxma1 b.6.1.1 (A:1-97) Plastocyanin {Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]

Probab=98.66  E-value=2.8e-08  Score=77.38  Aligned_cols=92  Identities=23%  Similarity=0.280  Sum_probs=58.7

Q ss_pred             ceeeeeeccCCcccCCCCCCCccccccCCceecCCEEEEEeCCCC-ceEEEEcc-cc--cCCCCCCCCCccCCCCCceEE
Q 018026          195 PATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARV-HDVVEVTK-AA--YDSCNSSSTISKSTNPPTRIT  270 (362)
Q Consensus       195 ~~~~~VG~~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~-hsV~~v~~-~~--y~~C~~~~~~~~~~~G~~~v~  270 (362)
                      ..++.+|.+.+       ...|..  +.++.++||+|.|.+..+. |.+..... ..  ........ ..........++
T Consensus         2 ~~~v~~g~~~~-------~~~F~P--~~i~V~~GdtV~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~t   71 (97)
T d2jxma1           2 SVQIKMGTDKY-------APLYEP--KALSISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSNTK-LAIAPGSFYSVT   71 (97)
T ss_dssp             CEEEEEEETTT-------EEEEES--SEEEECTTCEEEEEECSSCCCCBEEEECCTTSCHHHHCBCC-CCCSCSCCEEEE
T ss_pred             eEEEEEccCCC-------ceEEcC--CEEEECCCCEEEEEECCCcceeEEEecCCCccccccccccc-cccCcceEEEEe
Confidence            34677776543       122555  7799999999999996544 44433221 11  11111111 111122346789


Q ss_pred             cCCcccEEEEcCCCCCCCCCCeEEEEee
Q 018026          271 LGTAGEHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       271 l~~~G~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      ++++|.|||+|..  ||..||+..|+|.
T Consensus        72 f~~~G~y~Y~C~~--H~~~GM~G~I~Ve   97 (97)
T d2jxma1          72 LGTPGTYSFYCTP--HRGAGMVGTITVE   97 (97)
T ss_dssp             CCSCSEEEEECSS--TTTTTCEEEEEEC
T ss_pred             cCCCeEEEEEEcc--CCCCCCEEEEEEC
Confidence            9999999999985  9999999999984

>d2jxma1 b.6.1.1 (A:1-97) Plastocyanin {Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]

Probab=98.65  E-value=1.7e-08  Score=78.61  Aligned_cols=90  Identities=26%  Similarity=0.226  Sum_probs=57.7

Q ss_pred             eEEEecCCCC-CcCCCCCCCCCCccccCceeeeCCEEEEeecCC-CccEEEeCc-c--ccCCCCCCCCCCcCCCCCcEEE
Q 018026           23 TRHVVGDALG-WIVPPNGPATYSNWAANQTFTVGDTLVFNFAAG-NHDVTRVTQ-S--SFNACNTTSPLSRTTNSPASVT   97 (362)
Q Consensus        23 ~~~~VGg~~G-W~~~~~~~~~y~~Wa~~~~f~vGD~L~F~~~~~-~h~V~~V~~-~--~y~~C~~~~~i~~~~~G~~~v~   97 (362)
                      .++.+|.+.+ -.+.|          +..++++||+|+|.+..+ .|.++.... .  +......... ....+....++
T Consensus         3 ~~v~~g~~~~~~~F~P----------~~i~V~~GdtV~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~t   71 (97)
T d2jxma1           3 VQIKMGTDKYAPLYEP----------KALSISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSNTKL-AIAPGSFYSVT   71 (97)
T ss_dssp             EEEEEEETTTEEEEES----------SEEEECTTCEEEEEECSSCCCCBEEEECCTTSCHHHHCBCCC-CCSCSCCEEEE
T ss_pred             EEEEEccCCCceEEcC----------CEEEECCCCEEEEEECCCcceeEEEecCCCcccccccccccc-ccCcceEEEEe
Confidence            4667776533 33322          678999999999998764 444443211 1  1111221111 11122346789


Q ss_pred             EeeccceEEEcCCCCCCCCCCeeeEEee
Q 018026           98 LTASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        98 l~~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      ++++|.|||+|..  ||..||+..|.|.
T Consensus        72 f~~~G~y~Y~C~~--H~~~GM~G~I~Ve   97 (97)
T d2jxma1          72 LGTPGTYSFYCTP--HRGAGMVGTITVE   97 (97)
T ss_dssp             CCSCSEEEEECSS--TTTTTCEEEEEEC
T ss_pred             cCCCeEEEEEEcc--CCCCCCEEEEEEC
Confidence            9999999999976  9999999999984

>d2q5ba1 b.6.1.1 (A:1-105) Plastocyanin {Cyanobacterium (Phormidium laminosum) [TaxId: 32059]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Cyanobacterium (Phormidium laminosum) [TaxId: 32059]

Probab=98.64  E-value=1.3e-08  Score=80.25  Aligned_cols=92  Identities=18%  Similarity=0.203  Sum_probs=57.2

Q ss_pred             eeeeeeccCCcccCCCCCCCccccccCCceecCCEEEEEeCCC-CceEEEEcccccCCCCCCC-----CCccCCCCC-ce
Q 018026          196 ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPAR-VHDVVEVTKAAYDSCNSSS-----TISKSTNPP-TR  268 (362)
Q Consensus       196 ~~~~VG~~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~-~hsV~~v~~~~y~~C~~~~-----~~~~~~~G~-~~  268 (362)
                      .++.||.+.|       ...|+.  +..++++||+|.|.+... .|+++......-..+....     .......|. ..
T Consensus         3 ~tV~vg~~~g-------~~~F~P--~~l~v~~GdtV~f~n~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   73 (105)
T d2q5ba1           3 FTVKMGADSG-------LLQFEP--ANVTVHPGDTVKWVNNKLPPHNILFDDKQVPGASKELADKLSHSQLMFSPGESYE   73 (105)
T ss_dssp             EEEEESCTTS-------CSSEES--SEEEECTTEEEEEEECSSCCEEEEECGGGSGGGCHHHHHHHCEEEEECSTTCEEE
T ss_pred             EEEEEecCCC-------ceEEeC--CEEEECCCCEEEEEECCCCCceeEeecCcccccccccCCccccccccccCCceEE
Confidence            4677776543       123555  779999999999987544 5677654333211222110     111223332 23


Q ss_pred             EEc---CCcccEEEEcCCCCCCCCCCeEEEEee
Q 018026          269 ITL---GTAGEHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       269 v~l---~~~G~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      +.+   +++|.|||+|..  ||+.||+..|.|.
T Consensus        74 ~~f~~~~~~G~y~y~C~~--H~~~GM~G~I~Ve  104 (105)
T d2q5ba1          74 ITFSSDFPAGTYTYYCAP--HRGAGMVGKITVE  104 (105)
T ss_dssp             EEECTTSCSEEEEEECST--TGGGTCEEEEEEC
T ss_pred             EEEEeccCCceEEEEeCC--CCCCCCEEEEEEc
Confidence            332   467999999985  9999999999996

>d1plca_ b.6.1.1 (A:) Plastocyanin {Poplar (Populus nigra), variant italica [TaxId: 3691]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Poplar (Populus nigra), variant italica [TaxId: 3691]

Probab=98.64  E-value=2e-08  Score=78.94  Aligned_cols=90  Identities=20%  Similarity=0.245  Sum_probs=57.8

Q ss_pred             EEEecCCC-CCcCCCCCCCCCCccccCceeeeCCEEEEeecCCC-ccEEEeCccccCC-C----CCCCCCCcCCCCC-cE
Q 018026           24 RHVVGDAL-GWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGN-HDVTRVTQSSFNA-C----NTTSPLSRTTNSP-AS   95 (362)
Q Consensus        24 ~~~VGg~~-GW~~~~~~~~~y~~Wa~~~~f~vGD~L~F~~~~~~-h~V~~V~~~~y~~-C----~~~~~i~~~~~G~-~~   95 (362)
                      +++||.+. +-.+.+          +..++++||+|+|.+..+. |+|+......... .    ...........|. ..
T Consensus         2 ~V~~g~d~g~~~F~P----------~~iti~~GdtV~f~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~   71 (99)
T d1plca_           2 DVLLGADDGSLAFVP----------SEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGETFE   71 (99)
T ss_dssp             EEEESCTTCCSCEES----------SEEEECTTCEEEEEECSSCCBCCEECTTSSCTTCCHHHHCCCTTCCBCSTTCEEE
T ss_pred             EEEEEeCCCceEEeC----------CEEEECCCCEEEEEECCCCCccEEEccCcCCCccccccCcccccccccCCCceEE
Confidence            46777543 344433          7889999999999887654 9997542211110 1    0011111112222 56


Q ss_pred             EEEeeccceEEEcCCCCCCCCCCeeeEEee
Q 018026           96 VTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        96 v~l~~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      ++++++|.|+|+|.  .|+..||+..|.|.
T Consensus        72 ~tF~~~G~y~Y~C~--pH~~~GM~G~I~V~   99 (99)
T d1plca_          72 VALSNKGEYSFYCS--PHQGAGMVGKVTVN   99 (99)
T ss_dssp             EECCSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred             EecCCCceEEEEeC--CCcCCCcEEEEEEC
Confidence            78899999999996  49999999999984

>d1paza_ b.6.1.1 (A:) Pseudoazurin {Alcaligenes faecalis, strain s-6 [TaxId: 511]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Alcaligenes faecalis, strain s-6 [TaxId: 511]

Probab=98.64  E-value=3.1e-08  Score=80.87  Aligned_cols=76  Identities=17%  Similarity=0.204  Sum_probs=56.0

Q ss_pred             cCCceecCCEEEEEeCCCCceEEEEcccccCCCCCCCCCccCCCCCceEEcCCcccEEEEcCCCCCCCCCCeEEEEeeCC
Q 018026          221 RNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGG  300 (362)
Q Consensus       221 ~~~~f~vGD~LvF~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~HC~~GmKl~I~V~~~  300 (362)
                      +..++++||+|.|.+..+.|+|..+....++.=..   ..........++++.+|.|+|+|..  ||..||+..|.|...
T Consensus        21 ~~itI~~GDTV~f~n~~~~Hnv~~~~~~~~~~~~~---~~~~~~~~~s~tF~~~G~y~Y~Ctp--H~~~GM~G~I~Vg~~   95 (120)
T d1paza_          21 AYIKANPGDTVTFIPVDKGHNVESIKDMIPEGAEK---FKSKINENYVLTVTQPGAYLVKCTP--HYAMGMIALIAVGDS   95 (120)
T ss_dssp             SEEEECTTCEEEEEESSSSCCCEECTTCSCTTCCC---CBCCTTCCEEEECCSCEEEEEECTT--TGGGTCEEEEEESSS
T ss_pred             CEEEECCCCEEEEeeCCCcceEeeccccCcccccc---cccccCceEEEEecCCCeEEEEEee--CCCCCCEEEEEECCC
Confidence            67899999999999988889997654333221110   0001123467999999999999985  999999999999764


Q ss_pred             C
Q 018026          301 S  301 (362)
Q Consensus       301 ~  301 (362)
                      .
T Consensus        96 ~   96 (120)
T d1paza_          96 P   96 (120)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1plca_ b.6.1.1 (A:) Plastocyanin {Poplar (Populus nigra), variant italica [TaxId: 3691]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Poplar (Populus nigra), variant italica [TaxId: 3691]

Probab=98.64  E-value=4.5e-08  Score=76.88  Aligned_cols=91  Identities=23%  Similarity=0.309  Sum_probs=58.4

Q ss_pred             eeeeeccCCcccCCCCCCCccccccCCceecCCEEEEEeCCCC-ceEEEEcccccC-CC----CCCCCCccCCCC-CceE
Q 018026          197 THVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARV-HDVVEVTKAAYD-SC----NSSSTISKSTNP-PTRI  269 (362)
Q Consensus       197 ~~~VG~~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~-hsV~~v~~~~y~-~C----~~~~~~~~~~~G-~~~v  269 (362)
                      +++||.+.|       ...|+.  +..++++||+|+|..+.+. |+|+........ ..    ...........| ...+
T Consensus         2 ~V~~g~d~g-------~~~F~P--~~iti~~GdtV~f~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~   72 (99)
T d1plca_           2 DVLLGADDG-------SLAFVP--SEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGETFEV   72 (99)
T ss_dssp             EEEESCTTC-------CSCEES--SEEEECTTCEEEEEECSSCCBCCEECTTSSCTTCCHHHHCCCTTCCBCSTTCEEEE
T ss_pred             EEEEEeCCC-------ceEEeC--CEEEECCCCEEEEEECCCCCccEEEccCcCCCccccccCcccccccccCCCceEEE
Confidence            577775432       223555  7799999999999886654 999753211100 00    000011111222 3568


Q ss_pred             EcCCcccEEEEcCCCCCCCCCCeEEEEee
Q 018026          270 TLGTAGEHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       270 ~l~~~G~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      +++++|.|+|+|.  .|++.||+..|.|.
T Consensus        73 tF~~~G~y~Y~C~--pH~~~GM~G~I~V~   99 (99)
T d1plca_          73 ALSNKGEYSFYCS--PHQGAGMVGKVTVN   99 (99)
T ss_dssp             ECCSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred             ecCCCceEEEEeC--CCcCCCcEEEEEEC
Confidence            8899999999996  49999999999984

>d2q5ba1 b.6.1.1 (A:1-105) Plastocyanin {Cyanobacterium (Phormidium laminosum) [TaxId: 32059]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Cyanobacterium (Phormidium laminosum) [TaxId: 32059]

Probab=98.61  E-value=1.1e-08  Score=80.59  Aligned_cols=91  Identities=20%  Similarity=0.175  Sum_probs=55.7

Q ss_pred             eEEEecCCCC-CcCCCCCCCCCCccccCceeeeCCEEEEeecCC-CccEEEeCccccCCCCCCC-----CCCcCCCCC-c
Q 018026           23 TRHVVGDALG-WIVPPNGPATYSNWAANQTFTVGDTLVFNFAAG-NHDVTRVTQSSFNACNTTS-----PLSRTTNSP-A   94 (362)
Q Consensus        23 ~~~~VGg~~G-W~~~~~~~~~y~~Wa~~~~f~vGD~L~F~~~~~-~h~V~~V~~~~y~~C~~~~-----~i~~~~~G~-~   94 (362)
                      .++.||.+.| ..+.+          +..++++||+|.|.+... .|+++.........+....     .......|. .
T Consensus         3 ~tV~vg~~~g~~~F~P----------~~l~v~~GdtV~f~n~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   72 (105)
T d2q5ba1           3 FTVKMGADSGLLQFEP----------ANVTVHPGDTVKWVNNKLPPHNILFDDKQVPGASKELADKLSHSQLMFSPGESY   72 (105)
T ss_dssp             EEEEESCTTSCSSEES----------SEEEECTTEEEEEEECSSCCEEEEECGGGSGGGCHHHHHHHCEEEEECSTTCEE
T ss_pred             EEEEEecCCCceEEeC----------CEEEECCCCEEEEEECCCCCceeEeecCcccccccccCCccccccccccCCceE
Confidence            3556776533 44433          788999999999977644 4677653222222222111     001122232 3


Q ss_pred             EEEE---eeccceEEEcCCCCCCCCCCeeeEEee
Q 018026           95 SVTL---TASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        95 ~v~l---~~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      .+++   +++|.|||+|..  ||+.||+..|.|.
T Consensus        73 ~~~f~~~~~~G~y~y~C~~--H~~~GM~G~I~Ve  104 (105)
T d2q5ba1          73 EITFSSDFPAGTYTYYCAP--HRGAGMVGKITVE  104 (105)
T ss_dssp             EEEECTTSCSEEEEEECST--TGGGTCEEEEEEC
T ss_pred             EEEEEeccCCceEEEEeCC--CCCCCCEEEEEEc
Confidence            3444   357999999985  9999999999995

>d1adwa_ b.6.1.1 (A:) Pseudoazurin {Thiosphaera pantotropha [TaxId: 82367]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Thiosphaera pantotropha [TaxId: 82367]

Probab=98.60  E-value=3.2e-08  Score=80.83  Aligned_cols=75  Identities=19%  Similarity=0.188  Sum_probs=54.3

Q ss_pred             cCCceecCCEEEEEeCCCCceEEEEcccccCCCCCCCCCccCCCCCceEEcCCcccEEEEcCCCCCCCCCCeEEEEeeCC
Q 018026          221 RNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGG  300 (362)
Q Consensus       221 ~~~~f~vGD~LvF~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~HC~~GmKl~I~V~~~  300 (362)
                      +..++++||+|.|.+....|+++.+....  ..... ...........++++.+|.|+|+|..  ||..||+..|.|...
T Consensus        21 ~~itI~~GdtV~f~n~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~tF~~~G~Y~Y~C~p--H~~~GM~G~I~Vg~~   95 (123)
T d1adwa_          21 AFVRAEPGDVINFVPTDKSHNVEAIKEIL--PEGVE-SFKSKINESYTLTVTEPGLYGVKCTP--HFGMGMVGLVQVGDA   95 (123)
T ss_dssp             SEEEECTTEEEEEEESSSSCCCEECTTSC--CTTCC-CCBCCTTCCEEEEECSCEEEEEECGG--GGGGTCEEEEEESSS
T ss_pred             CEEEECCCCEEEEEeCCCCcceecccCcc--ccccc-cccccCCcceEEeccCCCeEEEEEcc--CCCCCCEEEEEECCC
Confidence            77899999999999988888776543211  11111 11112223467999999999999996  999999999999653

>d1bqka_ b.6.1.1 (A:) Pseudoazurin {Achromobacter cycloclastes [TaxId: 223]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Achromobacter cycloclastes [TaxId: 223]

Probab=98.59  E-value=4.7e-08  Score=80.18  Aligned_cols=75  Identities=23%  Similarity=0.210  Sum_probs=55.0

Q ss_pred             cCceeeeCCEEEEeecCCCccEEEeCccccCCCCCCCCCCcCCCCCcEEEEeeccceEEEcCCCCCCCCCCeeeEEeecC
Q 018026           48 ANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSAR  127 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l~~~G~~yFic~~~~HC~~Gmk~~I~V~~~  127 (362)
                      +..++++||+|.|.+....|.+..+....-  ..... ..........++++++|.|+|+|..  ||..||+..|.|...
T Consensus        21 ~~itI~~GdTV~w~n~~~~~~~~~~~~~~p--~~~~~-~~~~~~~~~s~Tf~~~G~Y~Y~C~p--H~~~GM~G~IvVgd~   95 (124)
T d1bqka_          21 ASLKVAPGDTVTFIPTDKGHNVETIKGMIP--DGAEA-FKSKINENYKVTFTAPGVYGVKCTP--HYGMGMVGVVQVGDA   95 (124)
T ss_dssp             SEEEECTTCEEEEECSSSSCCCEECTTCSC--TTCCC-CBCCTTCCEEEECCSCEEEEEECTT--TGGGTCEEEEEESSS
T ss_pred             CEEEECCCCeEEEEECCCCcccccccccCC--Ccccc-ccccCCccEEEecCCCceEEEEecc--CcCCCCEEEEEECCC
Confidence            678999999999999988888865432211  11111 1111233467899999999999985  999999999999864

>d1bqka_ b.6.1.1 (A:) Pseudoazurin {Achromobacter cycloclastes [TaxId: 223]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Achromobacter cycloclastes [TaxId: 223]

Probab=98.51  E-value=1.1e-07  Score=77.90  Aligned_cols=77  Identities=18%  Similarity=0.231  Sum_probs=55.9

Q ss_pred             ccccccCCceecCCEEEEEeCCCCceEEEEcccccCCCCCCCCCccCCCCCceEEcCCcccEEEEcCCCCCCCCCCeEEE
Q 018026          216 YQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAV  295 (362)
Q Consensus       216 Y~~Wa~~~~f~vGD~LvF~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~HC~~GmKl~I  295 (362)
                      |+.  ...++++||+|.|.+....|.+..+....  ..... ...........++++.+|.|+|+|..  ||..||+..|
T Consensus        18 F~P--~~itI~~GdTV~w~n~~~~~~~~~~~~~~--p~~~~-~~~~~~~~~~s~Tf~~~G~Y~Y~C~p--H~~~GM~G~I   90 (124)
T d1bqka_          18 FEP--ASLKVAPGDTVTFIPTDKGHNVETIKGMI--PDGAE-AFKSKINENYKVTFTAPGVYGVKCTP--HYGMGMVGVV   90 (124)
T ss_dssp             EES--SEEEECTTCEEEEECSSSSCCCEECTTCS--CTTCC-CCBCCTTCCEEEECCSCEEEEEECTT--TGGGTCEEEE
T ss_pred             EeC--CEEEECCCCeEEEEECCCCcccccccccC--CCccc-cccccCCccEEEecCCCceEEEEecc--CcCCCCEEEE
Confidence            444  67899999999999988788876543322  11111 11112233567899999999999985  9999999999


Q ss_pred             EeeC
Q 018026          296 NVTG  299 (362)
Q Consensus       296 ~V~~  299 (362)
                      .|..
T Consensus        91 vVgd   94 (124)
T d1bqka_          91 QVGD   94 (124)
T ss_dssp             EESS
T ss_pred             EECC
Confidence            9965

>d1pmya_ b.6.1.1 (A:) Pseudoazurin {Methylobacterium extorquens, strain am1 [TaxId: 408]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Methylobacterium extorquens, strain am1 [TaxId: 408]

Probab=98.50  E-value=1.5e-07  Score=76.74  Aligned_cols=78  Identities=18%  Similarity=0.220  Sum_probs=54.9

Q ss_pred             ccccccCCceecCCEEEEEeCCCCceEEEEcccccCCCCCCCCCccCCCCCceEEcCCcccEEEEcCCCCCCCCCCeEEE
Q 018026          216 YQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAV  295 (362)
Q Consensus       216 Y~~Wa~~~~f~vGD~LvF~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~HC~~GmKl~I  295 (362)
                      |..  ...++++||+|+|.+....|.++.+.....+.   .............++++.+|.|+|+|..  ||..||+..|
T Consensus        18 F~P--~~ltV~~GDTV~f~n~d~~~h~~~~~~~~~~~---~~~~~~~~~~~~~~tF~~~G~Y~Y~C~p--H~~~GM~G~I   90 (123)
T d1pmya_          18 FDP--ALVRLKPGDSIKFLPTDKGHNVETIKGMAPDG---ADYVKTTVGQEAVVKFDKEGVYGFKCAP--HYMMGMVALV   90 (123)
T ss_dssp             EES--SEEEECTTCEEEEECSSSSCCCEECTTSSCTT---CCCCBCCTTSCEEEECCSCEEEEEECST--TTTTTCEEEE
T ss_pred             EeC--CEEEECCCCEEEEeeCCCCcccccccccCccc---ccccccccccccccccCCCceEEEEecc--CCCCCCEEEE
Confidence            444  77899999999999977777665543222111   0111111223567899999999999986  9999999999


Q ss_pred             EeeCC
Q 018026          296 NVTGG  300 (362)
Q Consensus       296 ~V~~~  300 (362)
                      .|...
T Consensus        91 ~Vgd~   95 (123)
T d1pmya_          91 VVGDK   95 (123)
T ss_dssp             EESSC
T ss_pred             EECCC
Confidence            99654

>d1pcsa_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]

Probab=98.49  E-value=4.3e-08  Score=76.74  Aligned_cols=90  Identities=17%  Similarity=0.201  Sum_probs=59.8

Q ss_pred             eeeeeeccCCcccCCCCCCCccccccCCceecCCEEEEEeC-CCCceEEEEcccccCCCCCC----CCCccCCCC-CceE
Q 018026          196 ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYP-ARVHDVVEVTKAAYDSCNSS----STISKSTNP-PTRI  269 (362)
Q Consensus       196 ~~~~VG~~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~-~~~hsV~~v~~~~y~~C~~~----~~~~~~~~G-~~~v  269 (362)
                      .++.||.+.|       ...|+.  +..++++||+|.|.+. ...|+|+......  .++..    ........| ...+
T Consensus         3 ~tv~~g~~~~-------~~~F~P--~~i~v~~GdtV~~~n~~~~~H~~~~~~~~~--~~~~~~~~~~~~~~~~~g~t~~~   71 (98)
T d1pcsa_           3 ATVKMGSDSG-------ALVFEP--STVTIKAGEEVKWVNNKLSPHNIVFDADGV--PADTAAKLSHKGLLFAAGESFTS   71 (98)
T ss_dssp             EEEEESCTTS-------CSSEES--SEEEECTTCEEEEEECSSCCEEEEECCSSS--CHHHHHHHCEEEEECSTTCEEEE
T ss_pred             eEEEeeeCCC-------ceEEeC--CEEEECCCCEEEEeECCCCccceEEecccc--CCCccccccccccccCCCcEEEE
Confidence            4677776542       223555  7789999999999874 4569997542110  11100    000112233 4578


Q ss_pred             EcCCcccEEEEcCCCCCCCCCCeEEEEee
Q 018026          270 TLGTAGEHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       270 ~l~~~G~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      +++++|.|||+|..  |++.||+..|.|.
T Consensus        72 tf~~~G~y~Y~C~~--H~~~gM~G~I~Ve   98 (98)
T d1pcsa_          72 TFTEPGTYTYYCEP--HRGAGMVGKVVVE   98 (98)
T ss_dssp             ECCSCEEEEEECGG--GTTTTCEEEEEEC
T ss_pred             eccCCceEEEEecc--CCCCCCEEEEEEC
Confidence            89999999999975  9999999999984

>d1pmya_ b.6.1.1 (A:) Pseudoazurin {Methylobacterium extorquens, strain am1 [TaxId: 408]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Methylobacterium extorquens, strain am1 [TaxId: 408]

Probab=98.47  E-value=1.2e-07  Score=77.36  Aligned_cols=75  Identities=20%  Similarity=0.262  Sum_probs=53.7

Q ss_pred             cCceeeeCCEEEEeecCCCccEEEeCccccCCCCCCCCCCcCCCCCcEEEEeeccceEEEcCCCCCCCCCCeeeEEeecC
Q 018026           48 ANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSAR  127 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l~~~G~~yFic~~~~HC~~Gmk~~I~V~~~  127 (362)
                      ...++++||+|+|.+..+.|.++.+.....+.   .............++++.+|.|+|+|..  ||..||+..|.|...
T Consensus        21 ~~ltV~~GDTV~f~n~d~~~h~~~~~~~~~~~---~~~~~~~~~~~~~~tF~~~G~Y~Y~C~p--H~~~GM~G~I~Vgd~   95 (123)
T d1pmya_          21 ALVRLKPGDSIKFLPTDKGHNVETIKGMAPDG---ADYVKTTVGQEAVVKFDKEGVYGFKCAP--HYMMGMVALVVVGDK   95 (123)
T ss_dssp             SEEEECTTCEEEEECSSSSCCCEECTTSSCTT---CCCCBCCTTSCEEEECCSCEEEEEECST--TTTTTCEEEEEESSC
T ss_pred             CEEEECCCCEEEEeeCCCCcccccccccCccc---ccccccccccccccccCCCceEEEEecc--CCCCCCEEEEEECCC
Confidence            78899999999999887777776543221111   0111111223467899999999999976  999999999999764

>d1pcsa_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]

Probab=98.42  E-value=5.1e-08  Score=76.35  Aligned_cols=90  Identities=13%  Similarity=0.182  Sum_probs=57.9

Q ss_pred             eEEEecCCCCCcCCCCCCCCCCccccCceeeeCCEEEEeec-CCCccEEEeCcc-ccCC---CCCCCCCCcCCCC-CcEE
Q 018026           23 TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFA-AGNHDVTRVTQS-SFNA---CNTTSPLSRTTNS-PASV   96 (362)
Q Consensus        23 ~~~~VGg~~GW~~~~~~~~~y~~Wa~~~~f~vGD~L~F~~~-~~~h~V~~V~~~-~y~~---C~~~~~i~~~~~G-~~~v   96 (362)
                      .++.||.+.|       ...|++  +..++++||+|.|.+. ...|+|+..... ..+.   ....+  .....| ...+
T Consensus         3 ~tv~~g~~~~-------~~~F~P--~~i~v~~GdtV~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~~--~~~~~g~t~~~   71 (98)
T d1pcsa_           3 ATVKMGSDSG-------ALVFEP--STVTIKAGEEVKWVNNKLSPHNIVFDADGVPADTAAKLSHKG--LLFAAGESFTS   71 (98)
T ss_dssp             EEEEESCTTS-------CSSEES--SEEEECTTCEEEEEECSSCCEEEEECCSSSCHHHHHHHCEEE--EECSTTCEEEE
T ss_pred             eEEEeeeCCC-------ceEEeC--CEEEECCCCEEEEeECCCCccceEEeccccCCCccccccccc--cccCCCcEEEE
Confidence            4566775432       122333  6889999999999775 456999753211 1000   11111  112223 3578


Q ss_pred             EEeeccceEEEcCCCCCCCCCCeeeEEee
Q 018026           97 TLTASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        97 ~l~~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      +++++|.|+|+|..  |+..||+..|.|.
T Consensus        72 tf~~~G~y~Y~C~~--H~~~gM~G~I~Ve   98 (98)
T d1pcsa_          72 TFTEPGTYTYYCEP--HRGAGMVGKVVVE   98 (98)
T ss_dssp             ECCSCEEEEEECGG--GTTTTCEEEEEEC
T ss_pred             eccCCceEEEEecc--CCCCCCEEEEEEC
Confidence            88999999999975  9999999999984

>d1qhqa_ b.6.1.1 (A:) Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Auracyanin
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=98.41  E-value=3.1e-07  Score=75.95  Aligned_cols=83  Identities=20%  Similarity=0.362  Sum_probs=54.4

Q ss_pred             CccccccCCceecCCEEEEEeCCC-----CceEEEEccccc-------------CCCCC-----CCCC---ccCCCC---
Q 018026          215 GYQNWARNNNFSVGDILVFDYPAR-----VHDVVEVTKAAY-------------DSCNS-----SSTI---SKSTNP---  265 (362)
Q Consensus       215 ~Y~~Wa~~~~f~vGD~LvF~y~~~-----~hsV~~v~~~~y-------------~~C~~-----~~~~---~~~~~G---  265 (362)
                      .|+.  +..+++.||+|.|.|.+.     .|+++.+...+-             +.=..     ...+   .....|   
T Consensus        28 ~F~p--~~i~v~aG~~V~~~~~N~~~~~~~Hn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~t~~~~pg~s~  105 (139)
T d1qhqa_          28 AFAQ--TSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPDTPNALAWTAMLNAGESG  105 (139)
T ss_dssp             SBSC--SEEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCCTTCTTEEEECCCBCTTEEE
T ss_pred             eEcC--CeEEECCCCEEEEEEeCCcccceeEEEeecccchhhHHHHHHhhhccchhccccCCCcccccccccccCCcceE
Confidence            3555  778999999999998543     499887643210             00000     0000   001111   


Q ss_pred             CceEEcCCcccEEEEcCCCCCCCCCCeEEEEeeC
Q 018026          266 PTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTG  299 (362)
Q Consensus       266 ~~~v~l~~~G~~yFic~~~~HC~~GmKl~I~V~~  299 (362)
                      ...|+..++|.|+|+|++++||+.||+..|.|..
T Consensus       106 ~i~f~~~~~G~y~f~Ct~pgH~~~GM~G~i~V~P  139 (139)
T d1qhqa_         106 SVTFRTPAPGTYLYICTFPGHYLAGMKGTLTVTP  139 (139)
T ss_dssp             EEEEECCSSEEEEEECCSTTTTTTTCEEEEEEEC
T ss_pred             EEEEecCCCeEEEEEcCCcCcccccCeEEEEEcC
Confidence            2346778899999999999999999999999863

>d1qhqa_ b.6.1.1 (A:) Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Auracyanin
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=98.26  E-value=8.8e-07  Score=73.08  Aligned_cols=78  Identities=23%  Similarity=0.439  Sum_probs=51.0

Q ss_pred             cCceeeeCCEEEEeecCC-----CccEEEeCcccc-------------CCCCCCCC-----CC---cCCCC---CcEEEE
Q 018026           48 ANQTFTVGDTLVFNFAAG-----NHDVTRVTQSSF-------------NACNTTSP-----LS---RTTNS---PASVTL   98 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~~-----~h~V~~V~~~~y-------------~~C~~~~~-----i~---~~~~G---~~~v~l   98 (362)
                      +..+++.||+|.|.|.+.     .|+++.+...+-             +.=....+     +.   ....|   ...|+.
T Consensus        32 ~~i~v~aG~~V~~~~~N~~~~~~~Hn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~t~~~~pg~s~~i~f~~  111 (139)
T d1qhqa_          32 TSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPDTPNALAWTAMLNAGESGSVTFRT  111 (139)
T ss_dssp             SEEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCCTTCTTEEEECCCBCTTEEEEEEEEC
T ss_pred             CeEEECCCCEEEEEEeCCcccceeEEEeecccchhhHHHHHHhhhccchhccccCCCcccccccccccCCcceEEEEEec
Confidence            678999999999998753     399877632110             00000000     00   00111   124556


Q ss_pred             eeccceEEEcCCCCCCCCCCeeeEEee
Q 018026           99 TASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        99 ~~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      .++|.|+|+|++++||+.||+..|.|.
T Consensus       112 ~~~G~y~f~Ct~pgH~~~GM~G~i~V~  138 (139)
T d1qhqa_         112 PAPGTYLYICTFPGHYLAGMKGTLTVT  138 (139)
T ss_dssp             CSSEEEEEECCSTTTTTTTCEEEEEEE
T ss_pred             CCCeEEEEEcCCcCcccccCeEEEEEc
Confidence            789999999999999999999999985

>d1bxua_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 7942 [TaxId: 1143]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Cyanobacterium (Synechocystis sp.), pcc 7942 [TaxId: 1143]

Probab=98.20  E-value=1.2e-06  Score=67.64  Aligned_cols=71  Identities=18%  Similarity=0.188  Sum_probs=49.5

Q ss_pred             cCceeeeCCEEEEeecCC-CccEEEeCccccCCCCCCCCCCcCCCC-CcEEEEeeccceEEEcCCCCCCCCCCeeeEEee
Q 018026           48 ANQTFTVGDTLVFNFAAG-NHDVTRVTQSSFNACNTTSPLSRTTNS-PASVTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~~-~h~V~~V~~~~y~~C~~~~~i~~~~~G-~~~v~l~~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      +..++.+||+|.|.+..+ .|+++.........   ..  .....| ...++++++|.|+|+|..  |+..||+..|.|.
T Consensus        19 ~~i~I~~GdtV~f~n~d~~~h~~~~~~~~~~~~---~~--~~~~~g~~~~~tF~~~G~y~Y~C~~--H~~~gM~G~I~Ve   91 (91)
T d1bxua_          19 STIEIQAGDTVQWVNNKLAPHNVVVEGQPELSH---KD--LAFSPGETFEATFSEPGTYTYYCEP--HRGAGMVGKIVVQ   91 (91)
T ss_dssp             SEEEECTTCEEEEEECSSCCEEEEETTCGGGCE---EE--EECSTTCEEEEECCSCEEEEEECTT--TGGGTCEEEEEEC
T ss_pred             CEEEECCCCEEEEEECCcCCceEEecccccccc---cc--cccCCCCCEEEEeccCceEEEEeCC--CCCCCCEEEEEEC
Confidence            788999999999988654 45554322221110   00  011223 357899999999999986  9999999999984

>d1bxua_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 7942 [TaxId: 1143]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Cyanobacterium (Synechocystis sp.), pcc 7942 [TaxId: 1143]

Probab=98.15  E-value=1.4e-06  Score=67.07  Aligned_cols=76  Identities=16%  Similarity=0.212  Sum_probs=52.8

Q ss_pred             CCccccccCCceecCCEEEEEeCCC-CceEEEEcccccCCCCCCCCCccCCCC-CceEEcCCcccEEEEcCCCCCCCCCC
Q 018026          214 VGYQNWARNNNFSVGDILVFDYPAR-VHDVVEVTKAAYDSCNSSSTISKSTNP-PTRITLGTAGEHYFFCTFPGHCSAGQ  291 (362)
Q Consensus       214 ~~Y~~Wa~~~~f~vGD~LvF~y~~~-~hsV~~v~~~~y~~C~~~~~~~~~~~G-~~~v~l~~~G~~yFic~~~~HC~~Gm  291 (362)
                      ..|+.  +..++.+||+|.|..... .|++..........    . ......| ...++++++|.|+|+|..  |+..||
T Consensus        14 ~~F~P--~~i~I~~GdtV~f~n~d~~~h~~~~~~~~~~~~----~-~~~~~~g~~~~~tF~~~G~y~Y~C~~--H~~~gM   84 (91)
T d1bxua_          14 LAFEP--STIEIQAGDTVQWVNNKLAPHNVVVEGQPELSH----K-DLAFSPGETFEATFSEPGTYTYYCEP--HRGAGM   84 (91)
T ss_dssp             SSEES--SEEEECTTCEEEEEECSSCCEEEEETTCGGGCE----E-EEECSTTCEEEEECCSCEEEEEECTT--TGGGTC
T ss_pred             eEEEC--CEEEECCCCEEEEEECCcCCceEEecccccccc----c-ccccCCCCCEEEEeccCceEEEEeCC--CCCCCC
Confidence            34666  789999999999998554 46665432222110    0 0112223 457899999999999986  999999


Q ss_pred             eEEEEee
Q 018026          292 KLAVNVT  298 (362)
Q Consensus       292 Kl~I~V~  298 (362)
                      +..|.|.
T Consensus        85 ~G~I~Ve   91 (91)
T d1bxua_          85 VGKIVVQ   91 (91)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            9999984

>d2ov0a1 b.6.1.1 (A:1-105) Amicyanin {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Amicyanin
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.96  E-value=4.6e-06  Score=65.69  Aligned_cols=71  Identities=20%  Similarity=0.177  Sum_probs=48.6

Q ss_pred             cCCceecCCEEEEEeCC-CCceEEEEcccccCCCCCCCCCccCCC-CCceEEcCCcccEEEEcCCCCCCCCCCeEEEEee
Q 018026          221 RNNNFSVGDILVFDYPA-RVHDVVEVTKAAYDSCNSSSTISKSTN-PPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       221 ~~~~f~vGD~LvF~y~~-~~hsV~~v~~~~y~~C~~~~~~~~~~~-G~~~v~l~~~G~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      ...++++||+|.|..+. ..|+|.......-+ =....  ..... ....++++++|.|+|+|+.  |  .||+..|.|.
T Consensus        33 ~~i~V~~GdtV~f~N~d~~~H~v~~~~~~~~~-~~~~~--~~~~~g~~~~~tf~~pG~y~y~C~~--H--~~M~G~I~Ve  105 (105)
T d2ov0a1          33 PELHVKVGDTVTWINREAMPHNVHFVAGVLGE-AALKG--PMMKKEQAYSLTFTEAGTYDYHCTP--H--PFMRGKVVVE  105 (105)
T ss_dssp             SEEEECTTCEEEEEECSSSCBCCEECTTTSSS-SCEEC--CCBCTTEEEEEEECSCEEEEEECSS--C--TTCEEEEEEC
T ss_pred             CEEEECCCCEEEEEECCCCceeEEEecccCCc-ccccc--cccCCCceEEEEecCCeEEEEEecC--C--CCCEEEEEEC
Confidence            67899999999998754 45998764321100 00000  11222 2457889999999999997  7  7999999984

>d2ov0a1 b.6.1.1 (A:1-105) Amicyanin {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Amicyanin
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.90  E-value=9.2e-06  Score=63.89  Aligned_cols=70  Identities=23%  Similarity=0.230  Sum_probs=48.4

Q ss_pred             cCceeeeCCEEEEeecC-CCccEEEeCccccC-CCCCCCCCCcCCCC-CcEEEEeeccceEEEcCCCCCCCCCCeeeEEe
Q 018026           48 ANQTFTVGDTLVFNFAA-GNHDVTRVTQSSFN-ACNTTSPLSRTTNS-PASVTLTASGPHYFICSFPGHCLGGQKLAINV  124 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~-~~h~V~~V~~~~y~-~C~~~~~i~~~~~G-~~~v~l~~~G~~yFic~~~~HC~~Gmk~~I~V  124 (362)
                      ...++++||+|.|.++. ..|+|.......-+ ..+  ..  ....| ...++++++|.|+|+|+.  |  .||+..|.|
T Consensus        33 ~~i~V~~GdtV~f~N~d~~~H~v~~~~~~~~~~~~~--~~--~~~~g~~~~~tf~~pG~y~y~C~~--H--~~M~G~I~V  104 (105)
T d2ov0a1          33 PELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALK--GP--MMKKEQAYSLTFTEAGTYDYHCTP--H--PFMRGKVVV  104 (105)
T ss_dssp             SEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEE--CC--CBCTTEEEEEEECSCEEEEEECSS--C--TTCEEEEEE
T ss_pred             CEEEECCCCEEEEEECCCCceeEEEecccCCccccc--cc--ccCCCceEEEEecCCeEEEEEecC--C--CCCEEEEEE
Confidence            67899999999997764 45999764321111 011  11  11222 367899999999999998  6  799999998


Q ss_pred             e
Q 018026          125 S  125 (362)
Q Consensus       125 ~  125 (362)
                      .
T Consensus       105 e  105 (105)
T d2ov0a1         105 E  105 (105)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1id2a_ b.6.1.1 (A:) Amicyanin {Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Amicyanin
species: Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]

Probab=97.74  E-value=2e-05  Score=61.92  Aligned_cols=68  Identities=21%  Similarity=0.253  Sum_probs=47.3

Q ss_pred             cCCceecCCEEEEEeC-CCCceEEEEcc----cccCCCCCCCCCccCCCCCceEEcCCcccEEEEcCCCCCCCCCCeEEE
Q 018026          221 RNNNFSVGDILVFDYP-ARVHDVVEVTK----AAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAV  295 (362)
Q Consensus       221 ~~~~f~vGD~LvF~y~-~~~hsV~~v~~----~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~HC~~GmKl~I  295 (362)
                      ...++++||+|.|... ...|+|.....    ..|+.     . .........++++++|.|+|+|..  |  .||+..|
T Consensus        34 ~~i~V~~GdtV~f~N~d~~~H~v~~~~~~~~~~~f~s-----~-~~~~~~~~~~tf~~~G~y~y~C~~--H--~~M~G~I  103 (106)
T d1id2a_          34 PEVTIKAGETVYWVNGEVMPHNVAFKKGIVGEDAFRG-----E-MMTKDQAYAITFNEAGSYDYFCTP--H--PFMRGKV  103 (106)
T ss_dssp             SEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEEC-----C-CBCTTEEEEEEECSCEEEEEECSS--C--TTCEEEE
T ss_pred             CEEEECCCCEEEEEECCCCceeEEeccccCCcccccc-----c-ccCCCceEEEecCCCeEEEEEccC--C--CCCEEEE
Confidence            6789999999999874 44799864321    11111     0 011122357889999999999997  6  6999999


Q ss_pred             Eee
Q 018026          296 NVT  298 (362)
Q Consensus       296 ~V~  298 (362)
                      .|.
T Consensus       104 ~Ve  106 (106)
T d1id2a_         104 IVE  106 (106)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            984

>d1id2a_ b.6.1.1 (A:) Amicyanin {Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Amicyanin
species: Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]

Probab=97.60  E-value=4.5e-05  Score=59.78  Aligned_cols=71  Identities=17%  Similarity=0.224  Sum_probs=47.2

Q ss_pred             cCceeeeCCEEEEeec-CCCccEEEeCcc-ccCCCCCCCCCCcCCCCCcEEEEeeccceEEEcCCCCCCCCCCeeeEEee
Q 018026           48 ANQTFTVGDTLVFNFA-AGNHDVTRVTQS-SFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~-~~~h~V~~V~~~-~y~~C~~~~~i~~~~~G~~~v~l~~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      ...++++||+|.|.+. ...|+|...... ..+.-+  +.. ........++++++|.|+|+|..  |  .||+..|.|.
T Consensus        34 ~~i~V~~GdtV~f~N~d~~~H~v~~~~~~~~~~~f~--s~~-~~~~~~~~~tf~~~G~y~y~C~~--H--~~M~G~I~Ve  106 (106)
T d1id2a_          34 PEVTIKAGETVYWVNGEVMPHNVAFKKGIVGEDAFR--GEM-MTKDQAYAITFNEAGSYDYFCTP--H--PFMRGKVIVE  106 (106)
T ss_dssp             SEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEE--CCC-BCTTEEEEEEECSCEEEEEECSS--C--TTCEEEEEEC
T ss_pred             CEEEECCCCEEEEEECCCCceeEEeccccCCccccc--ccc-cCCCceEEEecCCCeEEEEEccC--C--CCCEEEEEEC
Confidence            6789999999999765 347998643211 111100  110 11122367889999999999997  6  6999999984

>d2ccwa1 b.6.1.1 (A:1-129) Azurin {Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId: 85698]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId: 85698]

Probab=97.53  E-value=8.1e-05  Score=60.66  Aligned_cols=80  Identities=16%  Similarity=0.260  Sum_probs=50.4

Q ss_pred             ccccccCCce-ecCCEEEEEeCCC-C-------ceEEEEcccccC-----------------CCCCCCCC---ccCCCCC
Q 018026          216 YQNWARNNNF-SVGDILVFDYPAR-V-------HDVVEVTKAAYD-----------------SCNSSSTI---SKSTNPP  266 (362)
Q Consensus       216 Y~~Wa~~~~f-~vGD~LvF~y~~~-~-------hsV~~v~~~~y~-----------------~C~~~~~~---~~~~~G~  266 (362)
                      |+.  +..++ +.|.+|.|.|.+. .       |+++.++..+++                 .-+. .-+   .....|.
T Consensus        15 f~~--~~i~V~k~G~~V~l~~~N~g~l~h~~m~hn~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~via~t~~l~pge   91 (129)
T d2ccwa1          15 YNV--KEIVVDKSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKAGDT-RVIAHTKVIGGGE   91 (129)
T ss_dssp             BSC--SEEEECTTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCTTCT-TEEEECCCBCTTC
T ss_pred             Ccc--ceEEEecCCCEEEEEEEcCCcCchheeeccccccCcccHHHHHHHHHHhhhccccCCCccc-cccccccccCCCc
Confidence            554  55565 5699999999543 2       998887543322                 1111 001   1122222


Q ss_pred             ---ceEEc---CCcccEEEEcCCCCCCCCCCeEEEEeeC
Q 018026          267 ---TRITL---GTAGEHYFFCTFPGHCSAGQKLAVNVTG  299 (362)
Q Consensus       267 ---~~v~l---~~~G~~yFic~~~~HC~~GmKl~I~V~~  299 (362)
                         ..|+.   +++|.|.|+|+++|| .+||+..|+|.+
T Consensus        92 t~~i~f~~p~~~~~G~Y~f~Ct~PGH-~~gM~G~l~V~~  129 (129)
T d2ccwa1          92 SDSVTFDVSKIAAGENYAYFCSFPGH-WAMMKGTLKLGS  129 (129)
T ss_dssp             EEEEEEEGGGSCTTCCEEEECCSTTG-GGTSEEEEEECC
T ss_pred             eEEEEEEecccCCCccEEEEeCCCCh-hhCcEEEEEEcC
Confidence               23444   468999999999999 799999999864

>d1cuoa_ b.6.1.1 (A:) Azurin {Methylomonas sp. j [TaxId: 32038]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Methylomonas sp. j [TaxId: 32038]

Probab=97.52  E-value=5.8e-05  Score=61.58  Aligned_cols=81  Identities=15%  Similarity=0.290  Sum_probs=49.5

Q ss_pred             CccccccCCceecCC-EEEEEeC-CCC-------ceEEEEcccccCCC-----------C-----CCCCC---ccCCCCC
Q 018026          215 GYQNWARNNNFSVGD-ILVFDYP-ARV-------HDVVEVTKAAYDSC-----------N-----SSSTI---SKSTNPP  266 (362)
Q Consensus       215 ~Y~~Wa~~~~f~vGD-~LvF~y~-~~~-------hsV~~v~~~~y~~C-----------~-----~~~~~---~~~~~G~  266 (362)
                      .|+.  +..+++.|| .|.|.|. .+.       |+.+.+...+++.=           +     ...-+   .....|.
T Consensus        14 ~fd~--~~i~V~aG~e~v~i~~~N~g~lph~~~~Hn~vi~~~~~~~~~~~~~~~~~~~~~~~~p~~~~via~t~~l~pGe   91 (129)
T d1cuoa_          14 TYST--RSISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFVTPGDKRVIAFTPIIGGGE   91 (129)
T ss_dssp             CCSC--SEEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTSCTTCTTCSEECCCBCTTC
T ss_pred             cCcc--cEEEEeCCCEEEEEEEEeCCcCCceeEEeeeeecccccHHHHHHHHHhhcccccCCCCCchhhhhhccccCccc
Confidence            3665  778889995 6666663 232       88876644332210           0     00111   1122222


Q ss_pred             ---ceEEc---CCcccEEEEcCCCCCCCCCCeEEEEee
Q 018026          267 ---TRITL---GTAGEHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       267 ---~~v~l---~~~G~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                         .+|+.   +++|.|.|+|+++|| .+||+..|.|.
T Consensus        92 ~~~i~f~~p~~~~~G~Y~f~Ct~PGH-~~gM~G~l~V~  128 (129)
T d1cuoa_          92 KTSVKFKVSALSKDEAYTYFCSYPGH-FSMMRGTLKLE  128 (129)
T ss_dssp             EEEEEEEGGGCCTTSCEEEECCSTTC-TTTSEEEEEEE
T ss_pred             cceEEEEccccCCCceEEEEeCCCCc-ccCcEEEEEEe
Confidence               23443   468999999999999 69999999985

>d2ccwa1 b.6.1.1 (A:1-129) Azurin {Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId: 85698]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId: 85698]

Probab=97.40  E-value=0.00012  Score=59.64  Aligned_cols=92  Identities=15%  Similarity=0.204  Sum_probs=56.0

Q ss_pred             eEEEecCCCCCcCCCCCCCCCCccccCcee-eeCCEEEEeecCCC--------ccEEEeCccccCC--------------
Q 018026           23 TRHVVGDALGWIVPPNGPATYSNWAANQTF-TVGDTLVFNFAAGN--------HDVTRVTQSSFNA--------------   79 (362)
Q Consensus        23 ~~~~VGg~~GW~~~~~~~~~y~~Wa~~~~f-~vGD~L~F~~~~~~--------h~V~~V~~~~y~~--------------   79 (362)
                      .+++|..++.-.+.+          +.+++ +.|.+|.|.|.+..        |+++.++..+.+.              
T Consensus         3 ~ei~i~~~d~mkf~~----------~~i~V~k~G~~V~l~~~N~g~l~h~~m~hn~vi~~~~~~~~~~~~~~~~~~~~~~   72 (129)
T d2ccwa1           3 CEATVESNDAMQYNV----------KEIVVDKSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDY   72 (129)
T ss_dssp             SEEEEEECTTSCBSC----------SEEEECTTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTT
T ss_pred             eEEEEecCCcccCcc----------ceEEEecCCCEEEEEEEcCCcCchheeeccccccCcccHHHHHHHHHHhhhcccc
Confidence            456666554445432          45555 46999999988632        8887764433221              


Q ss_pred             CCCCCC--C---CcCCCCC-cEEEE-----eeccceEEEcCCCCCCCCCCeeeEEee
Q 018026           80 CNTTSP--L---SRTTNSP-ASVTL-----TASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        80 C~~~~~--i---~~~~~G~-~~v~l-----~~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      =.....  +   .....|. ..+++     +++|.|.|+|++++| ..||+..|.|.
T Consensus        73 ~~~~~~~via~t~~l~pget~~i~f~~p~~~~~G~Y~f~Ct~PGH-~~gM~G~l~V~  128 (129)
T d2ccwa1          73 VKAGDTRVIAHTKVIGGGESDSVTFDVSKIAAGENYAYFCSFPGH-WAMMKGTLKLG  128 (129)
T ss_dssp             SCTTCTTEEEECCCBCTTCEEEEEEEGGGSCTTCCEEEECCSTTG-GGTSEEEEEEC
T ss_pred             CCCccccccccccccCCCceEEEEEEecccCCCccEEEEeCCCCh-hhCcEEEEEEc
Confidence            000011  0   1112222 34554     357999999999999 69999999986

>d1cuoa_ b.6.1.1 (A:) Azurin {Methylomonas sp. j [TaxId: 32038]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Methylomonas sp. j [TaxId: 32038]

Probab=97.39  E-value=8.4e-05  Score=60.57  Aligned_cols=92  Identities=15%  Similarity=0.268  Sum_probs=54.4

Q ss_pred             eEEEecCCCCCcCCCCCCCCCCccccCceeeeCC-EEEEeecC-CC-------ccEEEeCccccCCC-----------C-
Q 018026           23 TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGD-TLVFNFAA-GN-------HDVTRVTQSSFNAC-----------N-   81 (362)
Q Consensus        23 ~~~~VGg~~GW~~~~~~~~~y~~Wa~~~~f~vGD-~L~F~~~~-~~-------h~V~~V~~~~y~~C-----------~-   81 (362)
                      .++.|..+++-.+        +.  +..+++.|| +|.|.|.+ +.       |+.+.+...+++.=           + 
T Consensus         3 ~ei~i~~~d~m~f--------d~--~~i~V~aG~e~v~i~~~N~g~lph~~~~Hn~vi~~~~~~~~~~~~~~~~~~~~~~   72 (129)
T d1cuoa_           3 CETTVTSGDTMTY--------ST--RSISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNF   72 (129)
T ss_dssp             CEEEEEECSSSCC--------SC--SEEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTT
T ss_pred             eEEEEecCCcccC--------cc--cEEEEeCCCEEEEEEEEeCCcCCceeEEeeeeecccccHHHHHHHHHhhcccccC
Confidence            4555654444444        33  678889996 66666653 32       88876543332210           0 


Q ss_pred             --C--CCCC---CcCCCCC-cEEEEe-----eccceEEEcCCCCCCCCCCeeeEEee
Q 018026           82 --T--TSPL---SRTTNSP-ASVTLT-----ASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        82 --~--~~~i---~~~~~G~-~~v~l~-----~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                        .  ..-+   .....|. ..++++     ++|.|.|+|++++| ..||+..|.|.
T Consensus        73 ~~p~~~~via~t~~l~pGe~~~i~f~~p~~~~~G~Y~f~Ct~PGH-~~gM~G~l~V~  128 (129)
T d1cuoa_          73 VTPGDKRVIAFTPIIGGGEKTSVKFKVSALSKDEAYTYFCSYPGH-FSMMRGTLKLE  128 (129)
T ss_dssp             SCTTCTTCSEECCCBCTTCEEEEEEEGGGCCTTSCEEEECCSTTC-TTTSEEEEEEE
T ss_pred             CCCCchhhhhhccccCccccceEEEEccccCCCceEEEEeCCCCc-ccCcEEEEEEe
Confidence              0  0001   1112222 345553     58999999999999 69999999986

>d1e30a_ b.6.1.1 (A:) Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Rusticyanin
species: Thiobacillus ferrooxidans [TaxId: 920]

Probab=96.99  E-value=0.00045  Score=57.01  Aligned_cols=76  Identities=21%  Similarity=0.412  Sum_probs=46.7

Q ss_pred             ceeeeCCEEEEeecCC----CccEEEeCcc-ccCCCCCCCCC-------CcCCCC-Cc--EEEE-eeccceEEEcCCCCC
Q 018026           50 QTFTVGDTLVFNFAAG----NHDVTRVTQS-SFNACNTTSPL-------SRTTNS-PA--SVTL-TASGPHYFICSFPGH  113 (362)
Q Consensus        50 ~~f~vGD~L~F~~~~~----~h~V~~V~~~-~y~~C~~~~~i-------~~~~~G-~~--~v~l-~~~G~~yFic~~~~H  113 (362)
                      .+++.||+|+|++.+.    .|........ .+..=+.....       .....| ..  .|++ +.+|.|||.|.+.+|
T Consensus        62 i~v~~Gd~V~i~v~N~~~~~~H~~~ih~~g~~~~~~~~~~~~~~~~~~~~~v~pg~~~~~~f~~~~~pGty~YhCh~~~H  141 (153)
T d1e30a_          62 LEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTNFTWHPTAGTYYYVCQIPGH  141 (153)
T ss_dssp             EEECTTCEEEEEEEECCTTCCCCCEEESCCSSCCSSCCCCSEEEEBCCCCCCBTTEEEEEEEEECCCSEEEEEECCSTTT
T ss_pred             EEEeCCCEEEEEEEeCCCCCcccEEEEcCCCCccccccccccCCCccceeeecCCCEEEEEEEeCCCCeEEEEeCCchhH
Confidence            6789999999998542    3666554221 22211110000       001111 12  3443 468999999999999


Q ss_pred             CCCCCeeeEEee
Q 018026          114 CLGGQKLAINVS  125 (362)
Q Consensus       114 C~~Gmk~~I~V~  125 (362)
                      =..||...|.|.
T Consensus       142 ~~~GM~G~iiVe  153 (153)
T d1e30a_         142 AATGQFGKIVVK  153 (153)
T ss_dssp             TTTTCEEEEEEC
T ss_pred             HHCCCEEEEEEC
Confidence            999999999884

>d1e30a_ b.6.1.1 (A:) Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Rusticyanin
species: Thiobacillus ferrooxidans [TaxId: 920]

Probab=96.92  E-value=0.00052  Score=56.63  Aligned_cols=76  Identities=22%  Similarity=0.317  Sum_probs=47.1

Q ss_pred             CceecCCEEEEEeCCC----CceEEEEccc-ccCCCCCCCC-------CccCCCC---CceEEc-CCcccEEEEcCCCCC
Q 018026          223 NNFSVGDILVFDYPAR----VHDVVEVTKA-AYDSCNSSST-------ISKSTNP---PTRITL-GTAGEHYFFCTFPGH  286 (362)
Q Consensus       223 ~~f~vGD~LvF~y~~~----~hsV~~v~~~-~y~~C~~~~~-------~~~~~~G---~~~v~l-~~~G~~yFic~~~~H  286 (362)
                      .+++.||+|.|++.+.    .|........ .+..=+....       ......|   ...+++ +.+|.|||.|...+|
T Consensus        62 i~v~~Gd~V~i~v~N~~~~~~H~~~ih~~g~~~~~~~~~~~~~~~~~~~~~v~pg~~~~~~f~~~~~pGty~YhCh~~~H  141 (153)
T d1e30a_          62 LEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTNFTWHPTAGTYYYVCQIPGH  141 (153)
T ss_dssp             EEECTTCEEEEEEEECCTTCCCCCEEESCCSSCCSSCCCCSEEEEBCCCCCCBTTEEEEEEEEECCCSEEEEEECCSTTT
T ss_pred             EEEeCCCEEEEEEEeCCCCCcccEEEEcCCCCccccccccccCCCccceeeecCCCEEEEEEEeCCCCeEEEEeCCchhH
Confidence            6789999999999432    3766654221 1211111000       0011111   233443 568999999999999


Q ss_pred             CCCCCeEEEEee
Q 018026          287 CSAGQKLAVNVT  298 (362)
Q Consensus       287 C~~GmKl~I~V~  298 (362)
                      =++||...|.|.
T Consensus       142 ~~~GM~G~iiVe  153 (153)
T d1e30a_         142 AATGQFGKIVVK  153 (153)
T ss_dssp             TTTTCEEEEEEC
T ss_pred             HHCCCEEEEEEC
Confidence            999999999884

>d1ibya_ b.6.1.4 (A:) Red copper protein nitrosocyanin {Nitrosomonas europaea [TaxId: 915]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Nitrosocyanin
domain: Red copper protein nitrosocyanin
species: Nitrosomonas europaea [TaxId: 915]

Probab=96.92  E-value=0.00024  Score=56.09  Aligned_cols=70  Identities=16%  Similarity=0.146  Sum_probs=47.1

Q ss_pred             cCCceecCCEEEEEeCC---CCceEEEEcccccC-CCCCCCCCccCCCCCceEEcCCcccEEEEcCCCCCCCC-CCeEEE
Q 018026          221 RNNNFSVGDILVFDYPA---RVHDVVEVTKAAYD-SCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSA-GQKLAV  295 (362)
Q Consensus       221 ~~~~f~vGD~LvF~y~~---~~hsV~~v~~~~y~-~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~HC~~-GmKl~I  295 (362)
                      +..++++||.|.|.+.+   -.|++..   .++. ..+    +....+....++++++|.|+|+|..  ||.. ||+..|
T Consensus        38 ~~i~v~~Gd~V~~~~~n~d~~~H~~~i---~~~~~~~~----~~pG~t~~~~f~~~~~G~y~y~C~~--~~~~~~M~G~i  108 (112)
T d1ibya_          38 ETLVVKKGDAVKVVVENKSPISEGFSI---DAFGVQEV----IKAGETKTISFTADKAGAFTIWCQL--HPKNIHLPGTL  108 (112)
T ss_dssp             CEEEEETTCEEEEEEEECSSSCEEEEE---GGGTEEEE----ECTTCEEEEEEECCSCEEEEEBCSS--SCTTTBCCEEE
T ss_pred             CEEEEeCCCEEEEEEEeCCCCceeeee---cccccccc----cCCcceEEEEEEeccceEEEEECcc--cChhhcCeEEE
Confidence            45899999999998843   2487753   2221 111    1111122346788999999999997  8874 699999


Q ss_pred             EeeC
Q 018026          296 NVTG  299 (362)
Q Consensus       296 ~V~~  299 (362)
                      .|..
T Consensus       109 ~V~e  112 (112)
T d1ibya_         109 NVVE  112 (112)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9863

>d1ibya_ b.6.1.4 (A:) Red copper protein nitrosocyanin {Nitrosomonas europaea [TaxId: 915]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Nitrosocyanin
domain: Red copper protein nitrosocyanin
species: Nitrosomonas europaea [TaxId: 915]

Probab=96.69  E-value=0.00041  Score=54.71  Aligned_cols=70  Identities=14%  Similarity=0.166  Sum_probs=46.3

Q ss_pred             cCceeeeCCEEEEeecC-C--CccEEEeCccccCC-CCCCCCCCcCCCCCcEEEEeeccceEEEcCCCCCCCC-CCeeeE
Q 018026           48 ANQTFTVGDTLVFNFAA-G--NHDVTRVTQSSFNA-CNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLG-GQKLAI  122 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~-~--~h~V~~V~~~~y~~-C~~~~~i~~~~~G~~~v~l~~~G~~yFic~~~~HC~~-Gmk~~I  122 (362)
                      +..+++.||.|.|.+.+ +  .|++..   .++.. .+.    ....+....|+++++|.|+|+|..  ||.. ||+..|
T Consensus        38 ~~i~v~~Gd~V~~~~~n~d~~~H~~~i---~~~~~~~~~----~pG~t~~~~f~~~~~G~y~y~C~~--~~~~~~M~G~i  108 (112)
T d1ibya_          38 ETLVVKKGDAVKVVVENKSPISEGFSI---DAFGVQEVI----KAGETKTISFTADKAGAFTIWCQL--HPKNIHLPGTL  108 (112)
T ss_dssp             CEEEEETTCEEEEEEEECSSSCEEEEE---GGGTEEEEE----CTTCEEEEEEECCSCEEEEEBCSS--SCTTTBCCEEE
T ss_pred             CEEEEeCCCEEEEEEEeCCCCceeeee---ccccccccc----CCcceEEEEEEeccceEEEEECcc--cChhhcCeEEE
Confidence            46899999999998853 2  477753   12211 110    111112246777899999999997  7874 699999


Q ss_pred             Eeec
Q 018026          123 NVSA  126 (362)
Q Consensus       123 ~V~~  126 (362)
                      .|.+
T Consensus       109 ~V~e  112 (112)
T d1ibya_         109 NVVE  112 (112)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9863

>d1nwpa_ b.6.1.1 (A:) Azurin {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Pseudomonas putida [TaxId: 303]

Probab=96.31  E-value=0.0048  Score=49.70  Aligned_cols=26  Identities=35%  Similarity=0.650  Sum_probs=23.3

Q ss_pred             CCcccEEEEcCCCCCCCCCCeEEEEee
Q 018026          272 GTAGEHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       272 ~~~G~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      +++|.|-|+|+++||= +|||..|.|.
T Consensus       103 ~~~G~Y~f~Ct~PGH~-~~M~G~l~V~  128 (128)
T d1nwpa_         103 AAGEKYGFFCSFPGHI-SMMKGTVTLK  128 (128)
T ss_dssp             CTTSCEEEECCSTTCG-GGSEEEEEEC
T ss_pred             CCCceEEEEECCCCcc-cCceEEEEEC
Confidence            4679999999999996 8999999984

>d1nwpa_ b.6.1.1 (A:) Azurin {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Pseudomonas putida [TaxId: 303]

Probab=95.92  E-value=0.0097  Score=47.81  Aligned_cols=25  Identities=36%  Similarity=0.584  Sum_probs=22.3

Q ss_pred             eccceEEEcCCCCCCCCCCeeeEEee
Q 018026          100 ASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus       100 ~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      ++|.|-|+|+++||= +|||..|.|.
T Consensus       104 ~~G~Y~f~Ct~PGH~-~~M~G~l~V~  128 (128)
T d1nwpa_         104 AGEKYGFFCSFPGHI-SMMKGTVTLK  128 (128)
T ss_dssp             TTSCEEEECCSTTCG-GGSEEEEEEC
T ss_pred             CCceEEEEECCCCcc-cCceEEEEEC
Confidence            569999999999995 9999999884

>d1jzga_ b.6.1.1 (A:) Azurin {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.81  E-value=0.014  Score=46.76  Aligned_cols=26  Identities=27%  Similarity=0.579  Sum_probs=23.1

Q ss_pred             eeccceEEEcCCCCCCCCCCeeeEEee
Q 018026           99 TASGPHYFICSFPGHCLGGQKLAINVS  125 (362)
Q Consensus        99 ~~~G~~yFic~~~~HC~~Gmk~~I~V~  125 (362)
                      +++|.|-|+|++++|= .||+..|.|.
T Consensus       103 ~~~G~Y~f~Ct~PGH~-~gM~G~l~Ve  128 (128)
T d1jzga_         103 KEGEQYMFFCTFPGHS-ALMKGTLTLK  128 (128)
T ss_dssp             CTTCCEEEECCSTTGG-GTSEEEEEEC
T ss_pred             CCCceEEEEECCCCcc-cccEEEEEEC
Confidence            3679999999999996 9999999884

>d1jzga_ b.6.1.1 (A:) Azurin {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.68  E-value=0.0056  Score=49.29  Aligned_cols=26  Identities=38%  Similarity=0.689  Sum_probs=23.7

Q ss_pred             CCcccEEEEcCCCCCCCCCCeEEEEee
Q 018026          272 GTAGEHYFFCTFPGHCSAGQKLAVNVT  298 (362)
Q Consensus       272 ~~~G~~yFic~~~~HC~~GmKl~I~V~  298 (362)
                      +++|.|-|+|+++||= +||+..|+|.
T Consensus       103 ~~~G~Y~f~Ct~PGH~-~gM~G~l~Ve  128 (128)
T d1jzga_         103 KEGEQYMFFCTFPGHS-ALMKGTLTLK  128 (128)
T ss_dssp             CTTCCEEEECCSTTGG-GTSEEEEEEC
T ss_pred             CCCceEEEEECCCCcc-cccEEEEEEC
Confidence            5789999999999997 9999999984

>d1ikop_ b.6.1.5 (P:) Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Ephrin ectodomain
domain: Ephrin-b2 ectodomain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.50  E-value=0.0045  Score=50.76  Aligned_cols=76  Identities=18%  Similarity=0.225  Sum_probs=46.7

Q ss_pred             CceecCCEEEEE---eCC------CCceEEEEcccccCCCCCCCCC-ccCC--C--CCce--------------EEcCCc
Q 018026          223 NNFSVGDILVFD---YPA------RVHDVVEVTKAAYDSCNSSSTI-SKST--N--PPTR--------------ITLGTA  274 (362)
Q Consensus       223 ~~f~vGD~LvF~---y~~------~~hsV~~v~~~~y~~C~~~~~~-~~~~--~--G~~~--------------v~l~~~  274 (362)
                      ..+++||.|-+.   |+.      ....+++|++++|+.|+....- ..+.  .  ...+              +....-
T Consensus        24 i~V~i~D~ldIiCP~y~~~~~~~~E~~~lY~V~~e~y~~C~~~~~~~~~~~C~~P~~~~kft~kFQ~fsP~~lG~EF~pG  103 (141)
T d1ikop_          24 LYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKN  103 (141)
T ss_dssp             ECCCTTCEEEEECCCCCSSSCSCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCCTT
T ss_pred             EEeccCCEEEEECCCCCCCCCCcceEEEEEEECHHHhCcccCCCCCcEEEEeCCCCCCeEEEEEEeecCCCCCCeeecCC
Confidence            456788999883   432      2467889999999999975421 1110  1  1111              122222


Q ss_pred             ccEEEEcCCCC-----------CCC-CCCeEEEEee
Q 018026          275 GEHYFFCTFPG-----------HCS-AGQKLAVNVT  298 (362)
Q Consensus       275 G~~yFic~~~~-----------HC~-~GmKl~I~V~  298 (362)
                      ..||||++-.+           -|. +.|||.|.|-
T Consensus       104 ~~YY~IstS~g~~~gl~~~~gg~C~t~~MKl~i~V~  139 (141)
T d1ikop_         104 KDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVG  139 (141)
T ss_dssp             EEEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEET
T ss_pred             CeEEEEEcCCCCCCccccccCCccCCCccEEEEEeC
Confidence            36778877433           396 5899999985

>d1shxa1 b.6.1.5 (A:32-170) Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Ephrin ectodomain
domain: Ephrin-a5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.46  E-value=0.01  Score=48.36  Aligned_cols=78  Identities=22%  Similarity=0.292  Sum_probs=47.9

Q ss_pred             CceecCCEEEEE---eCC-------CCceEEEEcccccCCCCCCCCC-cc------C-CCCCce--EEcC----------
Q 018026          223 NNFSVGDILVFD---YPA-------RVHDVVEVTKAAYDSCNSSSTI-SK------S-TNPPTR--ITLG----------  272 (362)
Q Consensus       223 ~~f~vGD~LvF~---y~~-------~~hsV~~v~~~~y~~C~~~~~~-~~------~-~~G~~~--v~l~----------  272 (362)
                      +.+++||.|-+.   |+.       ....+++|++++|+.|+..+.. ..      + ..+..+  +++.          
T Consensus        23 i~V~i~D~ldIiCP~y~~~~~~~~~E~y~lY~Vs~e~y~~C~~~~~~~~~~~C~~P~~~~~~~kft~kFQ~fsP~~~G~E  102 (138)
T d1shxa1          23 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE  102 (138)
T ss_dssp             EEECTTCEEEEECCCCCTTCCSTTCCCEEEEEECHHHHHTTCSSSSEEEEEEECCTTCTTSSCEEEEECCSCCSSTTCCC
T ss_pred             EEeccCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEcCCCCCCCCCceEEEEEEEcCCCCCCee
Confidence            467889999883   431       2467889999999999975431 11      1 122222  2111          


Q ss_pred             -Ccc-cEEEEcCC---CCCCCCCCeEEEEeeCCC
Q 018026          273 -TAG-EHYFFCTF---PGHCSAGQKLAVNVTGGS  301 (362)
Q Consensus       273 -~~G-~~yFic~~---~~HC~~GmKl~I~V~~~~  301 (362)
                       ++| .||||++-   .++|. -|||.|.|-...
T Consensus       103 F~pG~~YY~ISTs~g~~~~~~-~mrLkv~V~p~~  135 (138)
T d1shxa1         103 FRPGREYFYISSAIPDNGRRS-CLKLKVFVRPTN  135 (138)
T ss_dssp             CCTTEEEEEEEEESSCCSCSC-CCEEEEEECCTT
T ss_pred             ecCCCEEEEEEeeCCCCCCcc-ceEeEEEEeCCC
Confidence             234 67888653   34554 499999997544

>d1fwxa1 b.6.1.4 (A:452-581) Nitrous oxide reductase, C-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Nitrosocyanin
domain: Nitrous oxide reductase, C-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.40  E-value=0.0067  Score=48.99  Aligned_cols=73  Identities=12%  Similarity=0.197  Sum_probs=44.6

Q ss_pred             cCCceecCCEEEEEeCCC------CceEEEEcccccCCCCCCCCCccCCCCCceEEcCCcccEEEEcCCCCCCC-CCCeE
Q 018026          221 RNNNFSVGDILVFDYPAR------VHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCS-AGQKL  293 (362)
Q Consensus       221 ~~~~f~vGD~LvF~y~~~------~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~HC~-~GmKl  293 (362)
                      ...+++.||.|.|...+.      .|....   ..|.-   ...+....+....|+.+++|.|+|+|+...|=. .||+.
T Consensus        52 ~~i~V~~Gd~V~~~ltN~d~~~~v~H~~~i---~~~~~---~~~~~PG~~~~~~F~a~~~G~y~~~C~~~cg~~H~~M~G  125 (132)
T d1fwxa1          52 ESFTVKEGDEVTVIVTNLDEIDDLTHGFTM---GNYGV---AMEIGPQMTSSVTFVAANPGVYWYYCQWFCHALHMEMRG  125 (132)
T ss_dssp             SEEEEETTCEEEEEEEECCCSTTCCEEEEE---TTTTE---EEEECTTCEEEEEEECCSCEEEEEECCSCCSTTCTTCEE
T ss_pred             CEEEEcCCCEEEEEEEcCCCCccceEeech---hhhcc---ccccCCCEEEEEEEeCCCCeEEEEECccccCcchhcCEE
Confidence            446788899999998532      244432   11110   000111112224578899999999999743332 68999


Q ss_pred             EEEeeC
Q 018026          294 AVNVTG  299 (362)
Q Consensus       294 ~I~V~~  299 (362)
                      .|.|..
T Consensus       126 ~iiVeP  131 (132)
T d1fwxa1         126 RMLVEP  131 (132)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            999964

>d1kbva1 b.6.1.3 (A:13-163) Nitrite reductase, NIR {Neisseria gonorrhoeae, AniA [TaxId: 485]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Neisseria gonorrhoeae, AniA [TaxId: 485]

Probab=95.27  E-value=0.0081  Score=49.38  Aligned_cols=80  Identities=18%  Similarity=0.177  Sum_probs=46.7

Q ss_pred             CceeeeCCEEEEeecCC-----CccEEEeCccccCCCCCCCCCCcCCCCCcEEEEeeccceEEEcCCCC---CCCCCCee
Q 018026           49 NQTFTVGDTLVFNFAAG-----NHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPG---HCLGGQKL  120 (362)
Q Consensus        49 ~~~f~vGD~L~F~~~~~-----~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l~~~G~~yFic~~~~---HC~~Gmk~  120 (362)
                      -.+++.||+|++++.+.     -|.+..--...-+.=.....+.-..+....|+++++|.+||.|....   |=..||..
T Consensus        59 ~i~v~~Gd~v~v~~~N~~~~~~~H~~~~h~~~~~~~~~~~~~i~PG~t~~y~f~a~~~Gt~~YH~H~~~~~~h~~~Gm~G  138 (151)
T d1kbva1          59 MIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYG  138 (151)
T ss_dssp             BEEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGGGTTTTCBCTTEEEEEEEECCSCEEEEEECCCSSHHHHHHTTCEE
T ss_pred             eEEEECCCEEEEEEEcCCCCceeeeccccccccCCCCcceeeeCCCCEEEEEEeCCCCeEEEEECCCCChHHHHhCCCEE
Confidence            46889999999999652     24443210000000000011111111224677789999999999654   66789999


Q ss_pred             eEEeecCC
Q 018026          121 AINVSARG  128 (362)
Q Consensus       121 ~I~V~~~~  128 (362)
                      .|.|....
T Consensus       139 ~liV~p~~  146 (151)
T d1kbva1         139 LILVEPKE  146 (151)
T ss_dssp             EEEEECTT
T ss_pred             EEEEECCC
Confidence            99997543

>d1fwxa1 b.6.1.4 (A:452-581) Nitrous oxide reductase, C-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Nitrosocyanin
domain: Nitrous oxide reductase, C-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.15  E-value=0.0087  Score=48.27  Aligned_cols=73  Identities=15%  Similarity=0.193  Sum_probs=43.5

Q ss_pred             cCceeeeCCEEEEeecCC------CccEEEeCccccCCCCCCCCCCcCCCCCcEEEEeeccceEEEcCCCCCCC-CCCee
Q 018026           48 ANQTFTVGDTLVFNFAAG------NHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCL-GGQKL  120 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~~------~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l~~~G~~yFic~~~~HC~-~Gmk~  120 (362)
                      ...+++.||.|.|++.+.      .|.... .+.+.+     ..+.-..+....|+.+++|.|+|+|+...|=. .||+.
T Consensus        52 ~~i~V~~Gd~V~~~ltN~d~~~~v~H~~~i-~~~~~~-----~~~~PG~~~~~~F~a~~~G~y~~~C~~~cg~~H~~M~G  125 (132)
T d1fwxa1          52 ESFTVKEGDEVTVIVTNLDEIDDLTHGFTM-GNYGVA-----MEIGPQMTSSVTFVAANPGVYWYYCQWFCHALHMEMRG  125 (132)
T ss_dssp             SEEEEETTCEEEEEEEECCCSTTCCEEEEE-TTTTEE-----EEECTTCEEEEEEECCSCEEEEEECCSCCSTTCTTCEE
T ss_pred             CEEEEcCCCEEEEEEEcCCCCccceEeech-hhhccc-----cccCCCEEEEEEEeCCCCeEEEEECccccCcchhcCEE
Confidence            456788899999998642      244322 111111     00000111124577789999999999743322 68999


Q ss_pred             eEEeec
Q 018026          121 AINVSA  126 (362)
Q Consensus       121 ~I~V~~  126 (362)
                      .|.|..
T Consensus       126 ~iiVeP  131 (132)
T d1fwxa1         126 RMLVEP  131 (132)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            999863

>d1aoza1 b.6.1.3 (A:1-129) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ascorbate oxidase
species: Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]

Probab=94.82  E-value=0.014  Score=46.56  Aligned_cols=79  Identities=9%  Similarity=0.023  Sum_probs=48.2

Q ss_pred             CceeeeCCEEEEeecCCC----ccEEEeCccccCCCCCC--------CCCCcCCCCCcEEEEeeccceEEEcCCCCCCCC
Q 018026           49 NQTFTVGDTLVFNFAAGN----HDVTRVTQSSFNACNTT--------SPLSRTTNSPASVTLTASGPHYFICSFPGHCLG  116 (362)
Q Consensus        49 ~~~f~vGD~L~F~~~~~~----h~V~~V~~~~y~~C~~~--------~~i~~~~~G~~~v~l~~~G~~yFic~~~~HC~~  116 (362)
                      .++++.||+|++++.+..    +++.-- .-.+..-...        .+|....+-...|+++++|++||.|.+..|=..
T Consensus        35 ~i~v~~GD~v~i~l~N~l~~~~~~iH~H-g~~~~~~~~~~~~~~~~~~~I~PG~s~~y~f~a~~~Gt~~YH~H~~~h~~~  113 (129)
T d1aoza1          35 TIRANAGDSVVVELTNKLHTEGVVIHWH-GILQRGTPWADGTASISQCAINPGETFFYNFTVDNPGTFFYHGHLGMQRSA  113 (129)
T ss_dssp             CEEEETTCEEEEEEEECCSSCCBCEEEE-TCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECCSCEEEEEEECSTTTGGG
T ss_pred             eEEEECCcEEEEEEEeCCCCCCeeeeec-cceeeccCccccccccccceECCCCEEEEEEECCCCCceEEecCCHHHHhC
Confidence            468999999999887631    222110 0000111100        011111122245677889999999999999999


Q ss_pred             CCeeeEEeecCC
Q 018026          117 GQKLAINVSARG  128 (362)
Q Consensus       117 Gmk~~I~V~~~~  128 (362)
                      ||..+|.|....
T Consensus       114 Gm~G~~iV~~~~  125 (129)
T d1aoza1         114 GLYGSLIVDPPQ  125 (129)
T ss_dssp             TCEEEEEEECCT
T ss_pred             CCEEEEEEcCCC
Confidence            999999997543

>d1kbva1 b.6.1.3 (A:13-163) Nitrite reductase, NIR {Neisseria gonorrhoeae, AniA [TaxId: 485]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Neisseria gonorrhoeae, AniA [TaxId: 485]

Probab=94.72  E-value=0.013  Score=48.13  Aligned_cols=80  Identities=11%  Similarity=0.131  Sum_probs=47.4

Q ss_pred             CceecCCEEEEEeCCC-----CceEEEEcccccCCCCCCCCCccCCCCCceEEcCCcccEEEEcCCCC---CCCCCCeEE
Q 018026          223 NNFSVGDILVFDYPAR-----VHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPG---HCSAGQKLA  294 (362)
Q Consensus       223 ~~f~vGD~LvF~y~~~-----~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~---HC~~GmKl~  294 (362)
                      .++++||+|++++.+.     -|.+..-....-+.=.....+....+-..+++.+++|.+||.|....   |=..||-..
T Consensus        60 i~v~~Gd~v~v~~~N~~~~~~~H~~~~h~~~~~~~~~~~~~i~PG~t~~y~f~a~~~Gt~~YH~H~~~~~~h~~~Gm~G~  139 (151)
T d1kbva1          60 IRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYGL  139 (151)
T ss_dssp             EEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGGGTTTTCBCTTEEEEEEEECCSCEEEEEECCCSSHHHHHHTTCEEE
T ss_pred             EEEECCCEEEEEEEcCCCCceeeeccccccccCCCCcceeeeCCCCEEEEEEeCCCCeEEEEECCCCChHHHHhCCCEEE
Confidence            6889999999999541     24443210000000001111211122234678899999999999654   667899999


Q ss_pred             EEeeCCCC
Q 018026          295 VNVTGGSS  302 (362)
Q Consensus       295 I~V~~~~~  302 (362)
                      |.|....+
T Consensus       140 liV~p~~~  147 (151)
T d1kbva1         140 ILVEPKEG  147 (151)
T ss_dssp             EEEECTTC
T ss_pred             EEEECCCC
Confidence            99976553

>d1oe2a1 b.6.1.3 (A:1-159) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Alcaligenes xylosoxidans [TaxId: 85698]

Probab=94.56  E-value=0.013  Score=48.61  Aligned_cols=79  Identities=15%  Similarity=0.253  Sum_probs=46.6

Q ss_pred             ceeeeCCEEEEeecCCC-----ccEEEeC-ccccCCCCCCCCCCcCCCCCcEEEEeeccceEEEcCCCC----CCCCCCe
Q 018026           50 QTFTVGDTLVFNFAAGN-----HDVTRVT-QSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPG----HCLGGQK  119 (362)
Q Consensus        50 ~~f~vGD~L~F~~~~~~-----h~V~~V~-~~~y~~C~~~~~i~~~~~G~~~v~l~~~G~~yFic~~~~----HC~~Gmk  119 (362)
                      ++++.||+|++++.+..     |++..=. ....+. +....|.-..+-...|+++++|.+||.|...+    |=..||.
T Consensus        67 I~v~~Gd~v~v~~~N~~~~~h~h~ih~hg~~~~~~g-~~~~~I~PG~t~ty~f~a~~~Gt~~yH~H~~~~~~~q~~~Gl~  145 (159)
T d1oe2a1          67 LVVHEGDYVQLTLVNPATNAMPHNVEFHGATGALGG-AKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGMS  145 (159)
T ss_dssp             EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGG-GGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTTCE
T ss_pred             EEEECCcEEEEEEECCCccccccceeeccccCCCCC-cccccCCCCCeEEEEEEcCCCceEEEEeCCCCCchhHHhCCCE
Confidence            78999999999998632     4443210 000000 00011211122234677889999999997532    4568999


Q ss_pred             eeEEeecCCC
Q 018026          120 LAINVSARGS  129 (362)
Q Consensus       120 ~~I~V~~~~~  129 (362)
                      .+|.|.....
T Consensus       146 G~liV~p~e~  155 (159)
T d1oe2a1         146 GTLMVLPRDG  155 (159)
T ss_dssp             EEEEEECTTC
T ss_pred             EEEEEECCCC
Confidence            9998875443

>d1qnia1 b.6.1.4 (A:451-581) Nitrous oxide reductase, C-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Nitrosocyanin
domain: Nitrous oxide reductase, C-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=94.49  E-value=0.021  Score=45.84  Aligned_cols=73  Identities=15%  Similarity=0.220  Sum_probs=44.0

Q ss_pred             cCceeeeCCEEEEeecC--C----CccEEEeCccccCCCCCCCCCCcCCCCCcEEEEeeccceEEEcCCCCCCC-CCCee
Q 018026           48 ANQTFTVGDTLVFNFAA--G----NHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCL-GGQKL  120 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~--~----~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l~~~G~~yFic~~~~HC~-~Gmk~  120 (362)
                      ...+++.||.|.|...+  +    .|+... .+-..+ .+    +.-..+....++.+++|.|+|+|+...|=. .+|+.
T Consensus        51 ~~i~V~~Gd~V~~~vtn~~~s~Dv~H~f~i-p~~~v~-~~----~~PG~t~~~~f~~~~~G~y~~~C~~~cg~~H~~M~g  124 (131)
T d1qnia1          51 TDFKVKEGDEVTVYITNLDMVEDVTHGFCM-VNHGVS-ME----ISPQQTASVTFTAGKPGVYWYYCNWFCHALHMEMVG  124 (131)
T ss_dssp             SEEEEETTCEEEEEEEECCCSTTCCEEEEE-TTTTEE-EE----ECTTCEEEEEEECCSSEEEEEECCSCCSTTGGGCEE
T ss_pred             ceEEecCCCEEEEEEEccCCCCcceEEEEE-eccCcc-cc----cCCCceEEEEEEcCCCEEEEEECccccCcchhcCee
Confidence            46789999999998763  1    255432 111111 00    000111224678899999999998732211 57999


Q ss_pred             eEEeec
Q 018026          121 AINVSA  126 (362)
Q Consensus       121 ~I~V~~  126 (362)
                      .|.|..
T Consensus       125 ~i~Vep  130 (131)
T d1qnia1         125 RMLVEA  130 (131)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            999974

>d1qnia1 b.6.1.4 (A:451-581) Nitrous oxide reductase, C-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Nitrosocyanin
domain: Nitrous oxide reductase, C-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=94.47  E-value=0.019  Score=46.18  Aligned_cols=73  Identities=16%  Similarity=0.220  Sum_probs=45.1

Q ss_pred             cCCceecCCEEEEEeCC---C---CceEEEEcccccC-CCCCCCCCccCCCCCceEEcCCcccEEEEcCCCCCCC-CCCe
Q 018026          221 RNNNFSVGDILVFDYPA---R---VHDVVEVTKAAYD-SCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCS-AGQK  292 (362)
Q Consensus       221 ~~~~f~vGD~LvF~y~~---~---~hsV~~v~~~~y~-~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~HC~-~GmK  292 (362)
                      ...+++.||.|.|...+   .   .|+...   .+|. ..+    +....+....++.+++|.|+|+|+...|=. .+|+
T Consensus        51 ~~i~V~~Gd~V~~~vtn~~~s~Dv~H~f~i---p~~~v~~~----~~PG~t~~~~f~~~~~G~y~~~C~~~cg~~H~~M~  123 (131)
T d1qnia1          51 TDFKVKEGDEVTVYITNLDMVEDVTHGFCM---VNHGVSME----ISPQQTASVTFTAGKPGVYWYYCNWFCHALHMEMV  123 (131)
T ss_dssp             SEEEEETTCEEEEEEEECCCSTTCCEEEEE---TTTTEEEE----ECTTCEEEEEEECCSSEEEEEECCSCCSTTGGGCE
T ss_pred             ceEEecCCCEEEEEEEccCCCCcceEEEEE---eccCcccc----cCCCceEEEEEEcCCCEEEEEECccccCcchhcCe
Confidence            45789999999998742   1   255543   1111 000    011112234688899999999999732221 5799


Q ss_pred             EEEEeeCC
Q 018026          293 LAVNVTGG  300 (362)
Q Consensus       293 l~I~V~~~  300 (362)
                      ..|.|.++
T Consensus       124 g~i~Vepa  131 (131)
T d1qnia1         124 GRMLVEAA  131 (131)
T ss_dssp             EEEEEECC
T ss_pred             eEEEEEeC
Confidence            99999753

>d1ikop_ b.6.1.5 (P:) Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Ephrin ectodomain
domain: Ephrin-b2 ectodomain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.24  E-value=0.0085  Score=49.04  Aligned_cols=77  Identities=17%  Similarity=0.252  Sum_probs=48.2

Q ss_pred             ceeeeCCEEEE---eecCC------CccEEEeCccccCCCCCCCCCC-cC----CCCCcEEEEe-------------ecc
Q 018026           50 QTFTVGDTLVF---NFAAG------NHDVTRVTQSSFNACNTTSPLS-RT----TNSPASVTLT-------------ASG  102 (362)
Q Consensus        50 ~~f~vGD~L~F---~~~~~------~h~V~~V~~~~y~~C~~~~~i~-~~----~~G~~~v~l~-------------~~G  102 (362)
                      ...++||.|-+   +|+.+      ...++.|++++|+.|+...... .+    -.++..+++.             .+|
T Consensus        24 i~V~i~D~ldIiCP~y~~~~~~~~E~~~lY~V~~e~y~~C~~~~~~~~~~~C~~P~~~~kft~kFQ~fsP~~lG~EF~pG  103 (141)
T d1ikop_          24 LYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKN  103 (141)
T ss_dssp             ECCCTTCEEEEECCCCCSSSCSCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCCTT
T ss_pred             EEeccCCEEEEECCCCCCCCCCcceEEEEEEECHHHhCcccCCCCCcEEEEeCCCCCCeEEEEEEeecCCCCCCeeecCC
Confidence            45678899988   55542      3567889999999999754221 11    0112222221             234


Q ss_pred             -ceEEEcCCCC-----------CCCC-CCeeeEEeec
Q 018026          103 -PHYFICSFPG-----------HCLG-GQKLAINVSA  126 (362)
Q Consensus       103 -~~yFic~~~~-----------HC~~-Gmk~~I~V~~  126 (362)
                       .||||++-.+           -|.. .|||.|.|..
T Consensus       104 ~~YY~IstS~g~~~gl~~~~gg~C~t~~MKl~i~V~~  140 (141)
T d1ikop_         104 KDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQ  140 (141)
T ss_dssp             EEEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETC
T ss_pred             CeEEEEEcCCCCCCccccccCCccCCCccEEEEEeCC
Confidence             6788876433           2875 8999999964

>d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus, ba3 type [TaxId: 274]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Periplasmic domain of cytochrome c oxidase subunit II
domain: Cytochrome c oxidase
species: Thermus thermophilus, ba3 type [TaxId: 274]

Probab=94.11  E-value=0.056  Score=42.72  Aligned_cols=68  Identities=18%  Similarity=0.205  Sum_probs=45.3

Q ss_pred             cCCceecCCEEEEEeCCC--CceEEEEcccccCCCCCCCCCccCCCC---CceEEcCCcccEEEEcCC---CCCCCCCCe
Q 018026          221 RNNNFSVGDILVFDYPAR--VHDVVEVTKAAYDSCNSSSTISKSTNP---PTRITLGTAGEHYFFCTF---PGHCSAGQK  292 (362)
Q Consensus       221 ~~~~f~vGD~LvF~y~~~--~hsV~~v~~~~y~~C~~~~~~~~~~~G---~~~v~l~~~G~~yFic~~---~~HC~~GmK  292 (362)
                      +..++..||.|.|+..+.  .|+... .  +|.-      ......|   ...++.+++|.|+|+|+.   .+|  .+|+
T Consensus        47 ~~l~vp~G~~V~~~lts~DV~H~f~i-p--~~~v------~~d~~PG~~~~~~~~~~~~G~y~~~C~~~CG~~H--~~M~  115 (122)
T d2cuaa_          47 NPIEVPQGAEIVFKITSPDVIHGFHV-E--GTNI------NVEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGH--QNMF  115 (122)
T ss_dssp             SSEEEETTSEEEEEEEBSSSCEEEEE-T--TSSC------EEEECBTBCEEEEEECCSCEEEEEECCSCCSTTS--TTCE
T ss_pred             CEEEEeCCCEEEEEEEcCCccceeEe-c--CCCe------eEEEecCceEEEEEEeccceeEEEEehhccCCCc--ccCe
Confidence            568999999999998643  466643 1  1110      0011112   235678999999999998   456  5799


Q ss_pred             EEEEeeC
Q 018026          293 LAVNVTG  299 (362)
Q Consensus       293 l~I~V~~  299 (362)
                      ..|.|..
T Consensus       116 g~i~V~e  122 (122)
T d2cuaa_         116 GTIVVKE  122 (122)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            9998863

>d1aoza1 b.6.1.3 (A:1-129) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ascorbate oxidase
species: Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]

Probab=93.98  E-value=0.022  Score=45.39  Aligned_cols=81  Identities=14%  Similarity=0.061  Sum_probs=49.9

Q ss_pred             cCCceecCCEEEEEeCCC----CceEEEEcccccCCCC--------CCCCCccCCCCCceEEcCCcccEEEEcCCCCCCC
Q 018026          221 RNNNFSVGDILVFDYPAR----VHDVVEVTKAAYDSCN--------SSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCS  288 (362)
Q Consensus       221 ~~~~f~vGD~LvF~y~~~----~hsV~~v~~~~y~~C~--------~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~HC~  288 (362)
                      ..++++.||+|++++.+.    .+++.--.- .+....        ...++....+-...+.++.+|.+||.|-...|=.
T Consensus        34 P~i~v~~GD~v~i~l~N~l~~~~~~iH~Hg~-~~~~~~~~~~~~~~~~~~I~PG~s~~y~f~a~~~Gt~~YH~H~~~h~~  112 (129)
T d1aoza1          34 PTIRANAGDSVVVELTNKLHTEGVVIHWHGI-LQRGTPWADGTASISQCAINPGETFFYNFTVDNPGTFFYHGHLGMQRS  112 (129)
T ss_dssp             CCEEEETTCEEEEEEEECCSSCCBCEEEETC-CCTTCGGGSCCBTTTBCCBCTTCEEEEEEECCSCEEEEEEECSTTTGG
T ss_pred             CeEEEECCcEEEEEEEeCCCCCCeeeeeccc-eeeccCccccccccccceECCCCEEEEEEECCCCCceEEecCCHHHHh
Confidence            346889999999988543    122221100 000000        0011221222234678899999999999999999


Q ss_pred             CCCeEEEEeeCCCC
Q 018026          289 AGQKLAVNVTGGSS  302 (362)
Q Consensus       289 ~GmKl~I~V~~~~~  302 (362)
                      +||-..|.|....+
T Consensus       113 ~Gm~G~~iV~~~~~  126 (129)
T d1aoza1         113 AGLYGSLIVDPPQG  126 (129)
T ss_dssp             GTCEEEEEEECCTT
T ss_pred             CCCEEEEEEcCCCC
Confidence            99999999976554

>d1oe2a1 b.6.1.3 (A:1-159) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Alcaligenes xylosoxidans [TaxId: 85698]

Probab=93.74  E-value=0.021  Score=47.35  Aligned_cols=80  Identities=13%  Similarity=0.116  Sum_probs=47.5

Q ss_pred             CceecCCEEEEEeCCC-----CceEEEEcccccCCCCCCCCCccCCCCCceEEcCCcccEEEEcCCC----CCCCCCCeE
Q 018026          223 NNFSVGDILVFDYPAR-----VHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFP----GHCSAGQKL  293 (362)
Q Consensus       223 ~~f~vGD~LvF~y~~~-----~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~----~HC~~GmKl  293 (362)
                      +++++||+|++++.+.     -|++..=...+...-.....+....+-..+|+++++|.+||.|-..    .|=..||-.
T Consensus        67 I~v~~Gd~v~v~~~N~~~~~h~h~ih~hg~~~~~~g~~~~~I~PG~t~ty~f~a~~~Gt~~yH~H~~~~~~~q~~~Gl~G  146 (159)
T d1oe2a1          67 LVVHEGDYVQLTLVNPATNAMPHNVEFHGATGALGGAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGMSG  146 (159)
T ss_dssp             EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGGGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTTCEE
T ss_pred             EEEECCcEEEEEEECCCccccccceeeccccCCCCCcccccCCCCCeEEEEEEcCCCceEEEEeCCCCCchhHHhCCCEE
Confidence            6889999999999643     2455321100000000011122222223467889999999999753    245689999


Q ss_pred             EEEeeCCCC
Q 018026          294 AVNVTGGSS  302 (362)
Q Consensus       294 ~I~V~~~~~  302 (362)
                      .|.|....+
T Consensus       147 ~liV~p~e~  155 (159)
T d1oe2a1         147 TLMVLPRDG  155 (159)
T ss_dssp             EEEEECTTC
T ss_pred             EEEEECCCC
Confidence            999976654

>d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus, ba3 type [TaxId: 274]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Periplasmic domain of cytochrome c oxidase subunit II
domain: Cytochrome c oxidase
species: Thermus thermophilus, ba3 type [TaxId: 274]

Probab=93.73  E-value=0.064  Score=42.39  Aligned_cols=67  Identities=19%  Similarity=0.207  Sum_probs=44.4

Q ss_pred             cCceeeeCCEEEEeecCC--CccEEEeCccccCCCCCCCCCCcCCCCC---cEEEEeeccceEEEcCC---CCCCCCCCe
Q 018026           48 ANQTFTVGDTLVFNFAAG--NHDVTRVTQSSFNACNTTSPLSRTTNSP---ASVTLTASGPHYFICSF---PGHCLGGQK  119 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~~--~h~V~~V~~~~y~~C~~~~~i~~~~~G~---~~v~l~~~G~~yFic~~---~~HC~~Gmk  119 (362)
                      +..++..||.+.|+..+.  .|+... .  +|.--      ....-|.   ..++.+++|.|+|+|+.   .+|  .+|+
T Consensus        47 ~~l~vp~G~~V~~~lts~DV~H~f~i-p--~~~v~------~d~~PG~~~~~~~~~~~~G~y~~~C~~~CG~~H--~~M~  115 (122)
T d2cuaa_          47 NPIEVPQGAEIVFKITSPDVIHGFHV-E--GTNIN------VEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGH--QNMF  115 (122)
T ss_dssp             SSEEEETTSEEEEEEEBSSSCEEEEE-T--TSSCE------EEECBTBCEEEEEECCSCEEEEEECCSCCSTTS--TTCE
T ss_pred             CEEEEeCCCEEEEEEEcCCccceeEe-c--CCCee------EEEecCceEEEEEEeccceeEEEEehhccCCCc--ccCe
Confidence            568899999999998753  355532 1  12100      0111122   35677899999999998   466  5799


Q ss_pred             eeEEee
Q 018026          120 LAINVS  125 (362)
Q Consensus       120 ~~I~V~  125 (362)
                      ..|.|.
T Consensus       116 g~i~V~  121 (122)
T d2cuaa_         116 GTIVVK  121 (122)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999886

>d1shxa1 b.6.1.5 (A:32-170) Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Ephrin ectodomain
domain: Ephrin-a5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.45  E-value=0.031  Score=45.41  Aligned_cols=76  Identities=21%  Similarity=0.284  Sum_probs=48.0

Q ss_pred             ceeeeCCEEEE---eecCC-------CccEEEeCccccCCCCCCCCCC--------cCCCCCcEEEEe------------
Q 018026           50 QTFTVGDTLVF---NFAAG-------NHDVTRVTQSSFNACNTTSPLS--------RTTNSPASVTLT------------   99 (362)
Q Consensus        50 ~~f~vGD~L~F---~~~~~-------~h~V~~V~~~~y~~C~~~~~i~--------~~~~G~~~v~l~------------   99 (362)
                      +.+++||.|-+   +|+.+       ...++.|++++|+.|+..+...        ....++..+++.            
T Consensus        23 i~V~i~D~ldIiCP~y~~~~~~~~~E~y~lY~Vs~e~y~~C~~~~~~~~~~~C~~P~~~~~~~kft~kFQ~fsP~~~G~E  102 (138)
T d1shxa1          23 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE  102 (138)
T ss_dssp             EEECTTCEEEEECCCCCTTCCSTTCCCEEEEEECHHHHHTTCSSSSEEEEEEECCTTCTTSSCEEEEECCSCCSSTTCCC
T ss_pred             EEeccCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEcCCCCCCCCCceEEEEEEEcCCCCCCee
Confidence            56789999988   55421       3567899999999999755321        012233333331            


Q ss_pred             -ecc-ceEEEcCC---CCCCCCCCeeeEEeec
Q 018026          100 -ASG-PHYFICSF---PGHCLGGQKLAINVSA  126 (362)
Q Consensus       100 -~~G-~~yFic~~---~~HC~~Gmk~~I~V~~  126 (362)
                       .+| .||||++-   .++|. .|||.|.|..
T Consensus       103 F~pG~~YY~ISTs~g~~~~~~-~mrLkv~V~p  133 (138)
T d1shxa1         103 FRPGREYFYISSAIPDNGRRS-CLKLKVFVRP  133 (138)
T ss_dssp             CCTTEEEEEEEEESSCCSCSC-CCEEEEEECC
T ss_pred             ecCCCEEEEEEeeCCCCCCcc-ceEeEEEEeC
Confidence             234 67888653   44554 4999999963

>d1mzya1 b.6.1.3 (A:41-193) Nitrite reductase, NIR {Rhodobacter sphaeroides [TaxId: 1063]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=91.45  E-value=0.058  Score=44.18  Aligned_cols=77  Identities=18%  Similarity=0.166  Sum_probs=46.5

Q ss_pred             CceecCCEEEEEeCCC-----CceEEE--EcccccCCCCCCCCCccCCCCCceEEcCCcccEEEEcCCCC-----CCCCC
Q 018026          223 NNFSVGDILVFDYPAR-----VHDVVE--VTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPG-----HCSAG  290 (362)
Q Consensus       223 ~~f~vGD~LvF~y~~~-----~hsV~~--v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~-----HC~~G  290 (362)
                      .+++.||.|++++.+.     -|....  ....+-...  ...+....+-..++.++++|.+||.|....     |=.+|
T Consensus        64 i~v~~Gd~v~i~~~N~~~~~~~H~~~~h~~~~~~~~~~--~~~i~PG~t~ty~f~a~~~Gt~~YH~H~~~~~~~~h~~~G  141 (153)
T d1mzya1          64 MIVHEGDYVELTLINPPENTMPHNIDFHAATGALGGGG--LTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVSG  141 (153)
T ss_dssp             EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGGGG--GCCBCTTEEEEEEEECCSCEEEEEECCCSTTHHHHHHHTT
T ss_pred             EEEeCCCEEEEEEEcCCCCceEccCccccCCcCCCCCc--cccccCCCEEEEEEEcCCCceEEEEeCCcccccHhHHhCC
Confidence            5789999999999542     243332  111111110  011221222234678899999999998654     55789


Q ss_pred             CeEEEEeeCCC
Q 018026          291 QKLAVNVTGGS  301 (362)
Q Consensus       291 mKl~I~V~~~~  301 (362)
                      |-..|.|....
T Consensus       142 m~G~~iV~P~d  152 (153)
T d1mzya1         142 MAGCIMVLPRD  152 (153)
T ss_dssp             CEEEEEEECTT
T ss_pred             CEEEEEEecCC
Confidence            99999997654

>d1mzya1 b.6.1.3 (A:41-193) Nitrite reductase, NIR {Rhodobacter sphaeroides [TaxId: 1063]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=91.24  E-value=0.073  Score=43.53  Aligned_cols=76  Identities=16%  Similarity=0.174  Sum_probs=45.6

Q ss_pred             CceeeeCCEEEEeecCC-----CccEEE-e-CccccCCCCCCCCCCcCCCCCcEEEEeeccceEEEcCCCC-----CCCC
Q 018026           49 NQTFTVGDTLVFNFAAG-----NHDVTR-V-TQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPG-----HCLG  116 (362)
Q Consensus        49 ~~~f~vGD~L~F~~~~~-----~h~V~~-V-~~~~y~~C~~~~~i~~~~~G~~~v~l~~~G~~yFic~~~~-----HC~~  116 (362)
                      -++++.||+|++++.+.     .|..-. . ...+....  ...+.-..+-...|+++++|.+||.|.+..     |=..
T Consensus        63 ti~v~~Gd~v~i~~~N~~~~~~~H~~~~h~~~~~~~~~~--~~~i~PG~t~ty~f~a~~~Gt~~YH~H~~~~~~~~h~~~  140 (153)
T d1mzya1          63 LMIVHEGDYVELTLINPPENTMPHNIDFHAATGALGGGG--LTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVS  140 (153)
T ss_dssp             EEEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGGGG--GCCBCTTEEEEEEEECCSCEEEEEECCCSTTHHHHHHHT
T ss_pred             cEEEeCCCEEEEEEEcCCCCceEccCccccCCcCCCCCc--cccccCCCEEEEEEEcCCCceEEEEeCCcccccHhHHhC
Confidence            36899999999999752     243322 1 11111110  011221122224677889999999998654     5577


Q ss_pred             CCeeeEEeec
Q 018026          117 GQKLAINVSA  126 (362)
Q Consensus       117 Gmk~~I~V~~  126 (362)
                      ||-..|.|..
T Consensus       141 Gm~G~~iV~P  150 (153)
T d1mzya1         141 GMAGCIMVLP  150 (153)
T ss_dssp             TCEEEEEEEC
T ss_pred             CCEEEEEEec
Confidence            9998888864

>d1gyca1 b.6.1.3 (A:1-130) Laccase {Trametes versicolor, laccase 2 [TaxId: 5325]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Trametes versicolor, laccase 2 [TaxId: 5325]

Probab=90.76  E-value=0.15  Score=40.50  Aligned_cols=78  Identities=10%  Similarity=0.129  Sum_probs=46.8

Q ss_pred             CceeeeCCEEEEeecCC--------CccEEE----eCccc-cCCCCCCC--CCCcCCCCCcEEEEe-eccceEEEcCCCC
Q 018026           49 NQTFTVGDTLVFNFAAG--------NHDVTR----VTQSS-FNACNTTS--PLSRTTNSPASVTLT-ASGPHYFICSFPG  112 (362)
Q Consensus        49 ~~~f~vGD~L~F~~~~~--------~h~V~~----V~~~~-y~~C~~~~--~i~~~~~G~~~v~l~-~~G~~yFic~~~~  112 (362)
                      .++++.||+|++++.+.        .|++..    +.... .+......  ++.-..+-...|++. ++|.+||.|.+..
T Consensus        35 tI~~~~GD~v~v~~~N~~~~~~~~~~~~iH~HG~~~~~~~~~d~~~~~s~~~i~PG~s~~Y~~~~~~~~Gt~wYH~H~~~  114 (130)
T d1gyca1          35 LITGKKGDRFQLNVVDTLTNHTMLKSTSIHWHGFFQAGTNWADGPAFVNQCPIASGHSFLYDFHVPDQAGTFWYHSHLST  114 (130)
T ss_dssp             CEEEETTCEEEEEEEECCCCGGGCSCBCEEEETCCCTTCGGGSCCBTTTBCCBCTTEEEEEEEECSSCCEEEEEEECSTT
T ss_pred             eEEEECCeEEEEEEEecCCCcccCCceeEEeccccccccCCCCCccccccCCCCCCCeEEEEEECCCCCceeEEecCCHH
Confidence            46899999999998753        233321    11111 11111111  111111112345553 6899999999999


Q ss_pred             CCCCCCeeeEEeec
Q 018026          113 HCLGGQKLAINVSA  126 (362)
Q Consensus       113 HC~~Gmk~~I~V~~  126 (362)
                      |=..||...|.|..
T Consensus       115 ~~~~Gl~G~liV~~  128 (130)
T d1gyca1         115 QYCDGLRGPFVVYD  128 (130)
T ss_dssp             GGGGTCEEEEEEEC
T ss_pred             HHhCCCEEEEEEeC
Confidence            99999999999874

>d2bw4a1 b.6.1.3 (A:8-164) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Alcaligenes xylosoxidans [TaxId: 85698]

Probab=90.00  E-value=0.04  Score=45.42  Aligned_cols=79  Identities=11%  Similarity=0.101  Sum_probs=46.2

Q ss_pred             CceecCCEEEEEeCCCC-----ceEEEEcccccCCCCCCCCCccCCCCCceEEcCCcccEEEEcCCC----CCCCCCCeE
Q 018026          223 NNFSVGDILVFDYPARV-----HDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFP----GHCSAGQKL  293 (362)
Q Consensus       223 ~~f~vGD~LvF~y~~~~-----hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~----~HC~~GmKl  293 (362)
                      ++++.||+|++++.+..     |.+..-...+-+.=.....+....+-..+++.+++|.+||.|-..    .|=..||-.
T Consensus        66 I~v~~GD~V~i~l~N~~~~~~~Hg~~~h~~~~~~~~~~~~~i~PGet~ty~f~a~~pGt~~YH~H~~~~~~~h~~~Gl~G  145 (157)
T d2bw4a1          66 MVVHENDYVELRLINPDTNTLLHNIDFHAATGALGGGALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGMNG  145 (157)
T ss_dssp             EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGGGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTTCEE
T ss_pred             EEEECCcEEEEEEEeCCCCcceEeeeecccCCCcCCcceeeECcCCEEeEEEECCCCccceEEECCCCchHHHHhCCCEE
Confidence            67899999999996421     443321000000000001122111223467889999999999743    355789999


Q ss_pred             EEEeeCCC
Q 018026          294 AVNVTGGS  301 (362)
Q Consensus       294 ~I~V~~~~  301 (362)
                      .|.|....
T Consensus       146 ~~iV~p~e  153 (157)
T d2bw4a1         146 AIMVLPRD  153 (157)
T ss_dssp             EEEEECTB
T ss_pred             EEEEeCCC
Confidence            99997654

>d2bw4a1 b.6.1.3 (A:8-164) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Alcaligenes xylosoxidans [TaxId: 85698]

Probab=89.97  E-value=0.046  Score=45.00  Aligned_cols=78  Identities=14%  Similarity=0.144  Sum_probs=45.8

Q ss_pred             CceeeeCCEEEEeecCCC-----ccEEEeCccccCCCCC-CCCCCcCCCCCcEEEEeeccceEEEcCCC----CCCCCCC
Q 018026           49 NQTFTVGDTLVFNFAAGN-----HDVTRVTQSSFNACNT-TSPLSRTTNSPASVTLTASGPHYFICSFP----GHCLGGQ  118 (362)
Q Consensus        49 ~~~f~vGD~L~F~~~~~~-----h~V~~V~~~~y~~C~~-~~~i~~~~~G~~~v~l~~~G~~yFic~~~----~HC~~Gm  118 (362)
                      .++++.||+|++++.+..     |.+.. .......... ...+.-..+-...|+++++|.+||.|...    .|=..||
T Consensus        65 ~I~v~~GD~V~i~l~N~~~~~~~Hg~~~-h~~~~~~~~~~~~~i~PGet~ty~f~a~~pGt~~YH~H~~~~~~~h~~~Gl  143 (157)
T d2bw4a1          65 LMVVHENDYVELRLINPDTNTLLHNIDF-HAATGALGGGALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGM  143 (157)
T ss_dssp             EEEEETTCEEEEEEEECTTCCSCBCCEE-TTSCSGGGGGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTTC
T ss_pred             eEEEECCcEEEEEEEeCCCCcceEeeee-cccCCCcCCcceeeECcCCEEeEEEECCCCccceEEECCCCchHHHHhCCC
Confidence            378999999999998522     44422 1111000000 00121111223467788999999999853    3557899


Q ss_pred             eeeEEeecC
Q 018026          119 KLAINVSAR  127 (362)
Q Consensus       119 k~~I~V~~~  127 (362)
                      ...|.|...
T Consensus       144 ~G~~iV~p~  152 (157)
T d2bw4a1         144 NGAIMVLPR  152 (157)
T ss_dssp             EEEEEEECT
T ss_pred             EEEEEEeCC
Confidence            999988643

>d1hfua1 b.6.1.3 (A:1-131) Laccase {Inky cap fungus (Coprinus cinereus) [TaxId: 5346]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Inky cap fungus (Coprinus cinereus) [TaxId: 5346]

Probab=89.97  E-value=0.19  Score=39.95  Aligned_cols=29  Identities=10%  Similarity=0.241  Sum_probs=25.6

Q ss_pred             eeccceEEEcCCCCCCCCCCeeeEEeecC
Q 018026           99 TASGPHYFICSFPGHCLGGQKLAINVSAR  127 (362)
Q Consensus        99 ~~~G~~yFic~~~~HC~~Gmk~~I~V~~~  127 (362)
                      +.+|.+||.|....|=..||...|.|...
T Consensus       101 ~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~  129 (131)
T d1hfua1         101 GHAGTFWYHSHFGTQYCDGLRGPMVIYDD  129 (131)
T ss_dssp             TCCEEEEEEECSTTGGGGTCEEEEEEECT
T ss_pred             CCcceEEEecCCHHHHhCCCEEEEEEcCC
Confidence            46899999999999999999999999753

>d2q9oa1 b.6.1.3 (A:1-162) Laccase {Melanocarpus albomyces [TaxId: 204285]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Melanocarpus albomyces [TaxId: 204285]

Probab=89.67  E-value=0.2  Score=41.15  Aligned_cols=33  Identities=12%  Similarity=0.198  Sum_probs=29.2

Q ss_pred             EEEEeeccceEEEcCCCCCCCCCCeeeEEeecC
Q 018026           95 SVTLTASGPHYFICSFPGHCLGGQKLAINVSAR  127 (362)
Q Consensus        95 ~v~l~~~G~~yFic~~~~HC~~Gmk~~I~V~~~  127 (362)
                      .+..+++|.+||.|....|=..||..+|.|...
T Consensus       126 ~f~~~~~Gt~wYH~H~~~q~~~Gl~G~~iV~~p  158 (162)
T d2q9oa1         126 RWRARQYGTSWYHSHFSAQYGNGVVGTIQINGP  158 (162)
T ss_dssp             EEECCSCEEEEEEECSTTGGGGTCEEEEEEECC
T ss_pred             eecCCCCEEEEeecCCHHHHhCCCEEEEEECCC
Confidence            566788999999999999999999999999754

>d1gyca1 b.6.1.3 (A:1-130) Laccase {Trametes versicolor, laccase 2 [TaxId: 5325]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Trametes versicolor, laccase 2 [TaxId: 5325]

Probab=87.30  E-value=0.53  Score=37.08  Aligned_cols=78  Identities=10%  Similarity=0.031  Sum_probs=47.3

Q ss_pred             CCceecCCEEEEEeCCC--------CceEEEE----ccc-ccCCCCCCC--CCccCCCCCceEEcC-CcccEEEEcCCCC
Q 018026          222 NNNFSVGDILVFDYPAR--------VHDVVEV----TKA-AYDSCNSSS--TISKSTNPPTRITLG-TAGEHYFFCTFPG  285 (362)
Q Consensus       222 ~~~f~vGD~LvF~y~~~--------~hsV~~v----~~~-~y~~C~~~~--~~~~~~~G~~~v~l~-~~G~~yFic~~~~  285 (362)
                      .+++++||+|++++.+.        .|++..-    ..+ ..+......  ++....+-..++.+. ++|.+||-|-...
T Consensus        35 tI~~~~GD~v~v~~~N~~~~~~~~~~~~iH~HG~~~~~~~~~d~~~~~s~~~i~PG~s~~Y~~~~~~~~Gt~wYH~H~~~  114 (130)
T d1gyca1          35 LITGKKGDRFQLNVVDTLTNHTMLKSTSIHWHGFFQAGTNWADGPAFVNQCPIASGHSFLYDFHVPDQAGTFWYHSHLST  114 (130)
T ss_dssp             CEEEETTCEEEEEEEECCCCGGGCSCBCEEEETCCCTTCGGGSCCBTTTBCCBCTTEEEEEEEECSSCCEEEEEEECSTT
T ss_pred             eEEEECCeEEEEEEEecCCCcccCCceeEEeccccccccCCCCCccccccCCCCCCCeEEEEEECCCCCceeEEecCCHH
Confidence            46889999999998543        2344421    111 111111110  111111112346664 6999999999999


Q ss_pred             CCCCCCeEEEEeeC
Q 018026          286 HCSAGQKLAVNVTG  299 (362)
Q Consensus       286 HC~~GmKl~I~V~~  299 (362)
                      |=..||...|.|..
T Consensus       115 ~~~~Gl~G~liV~~  128 (130)
T d1gyca1         115 QYCDGLRGPFVVYD  128 (130)
T ss_dssp             GGGGTCEEEEEEEC
T ss_pred             HHhCCCEEEEEEeC
Confidence            99999999999875

>d1hfua1 b.6.1.3 (A:1-131) Laccase {Inky cap fungus (Coprinus cinereus) [TaxId: 5346]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Inky cap fungus (Coprinus cinereus) [TaxId: 5346]

Probab=84.26  E-value=0.3  Score=38.72  Aligned_cols=33  Identities=18%  Similarity=0.376  Sum_probs=27.6

Q ss_pred             eEEc-CCcccEEEEcCCCCCCCCCCeEEEEeeCC
Q 018026          268 RITL-GTAGEHYFFCTFPGHCSAGQKLAVNVTGG  300 (362)
Q Consensus       268 ~v~l-~~~G~~yFic~~~~HC~~GmKl~I~V~~~  300 (362)
                      .+.+ +.+|.+||-|-...|=..||-..|.|...
T Consensus        96 ~~~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~  129 (131)
T d1hfua1          96 KFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDD  129 (131)
T ss_dssp             EECCTTCCEEEEEEECSTTGGGGTCEEEEEEECT
T ss_pred             EEeCCCCcceEEEecCCHHHHhCCCEEEEEEcCC
Confidence            3553 56899999999999999999999999754

>d1v10a1 b.6.1.3 (A:1-136) Laccase {Rigidoporus lignosus [TaxId: 219653]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Rigidoporus lignosus [TaxId: 219653]

Probab=83.48  E-value=0.46  Score=37.86  Aligned_cols=80  Identities=10%  Similarity=0.120  Sum_probs=46.8

Q ss_pred             cCceeeeCCEEEEeecCC--------CccEE----EeCc-cccCC-CCCC-CCCCcCCCCCcEEEEe-eccceEEEcCCC
Q 018026           48 ANQTFTVGDTLVFNFAAG--------NHDVT----RVTQ-SSFNA-CNTT-SPLSRTTNSPASVTLT-ASGPHYFICSFP  111 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~~--------~h~V~----~V~~-~~y~~-C~~~-~~i~~~~~G~~~v~l~-~~G~~yFic~~~  111 (362)
                      -.+++++||+|+.++.+.        .++|.    .+.. ...+. ...+ .+|.-..+-...+++. ..|.+||.|...
T Consensus        34 P~i~~~~GD~v~v~~~N~l~~~~~~~~tsiH~HGl~~~~~~~~dgv~~~t~~~I~PG~~~~Y~~~~~~~~Gt~wYH~H~~  113 (136)
T d1v10a1          34 PLITGNIDDRFQINVIDQLTDANMRRATSIHWHGFFQAGTTEMDGPAFVNQCPIIPNESFVYDFVVPGQAGTYWYHSHLS  113 (136)
T ss_dssp             CCEEEETTCEEEEEEEECCCCTTSCCCBCEEEETCCCTTCGGGSCCBTTTBCCBCTTEEEEEEEECTTCCEEEEEEECST
T ss_pred             CeEEEECCcEEEEEEEeCCCCcccCcceeEEecccccccccccCCCCccccceECCCCeEEEEEECCCCccceEEecCch
Confidence            457899999999999762        22221    1111 11111 0000 0111111111345553 579999999999


Q ss_pred             CCCCCCCeeeEEeecC
Q 018026          112 GHCLGGQKLAINVSAR  127 (362)
Q Consensus       112 ~HC~~Gmk~~I~V~~~  127 (362)
                      .|=..||...|.|...
T Consensus       114 ~q~~~GL~G~liV~~~  129 (136)
T d1v10a1         114 TQYCDGLRGAFVVYDP  129 (136)
T ss_dssp             TGGGGTCEEEEEEECT
T ss_pred             hHHhCCCEEEEEECCC
Confidence            9988999999999753

>d1kv7a1 b.6.1.3 (A:31-170) multi-copper oxidase CueO {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: multi-copper oxidase CueO
species: Escherichia coli [TaxId: 562]

Probab=80.27  E-value=2.5  Score=33.32  Aligned_cols=79  Identities=6%  Similarity=0.051  Sum_probs=44.0

Q ss_pred             cCceeeeCCEEEEeecCC---CccEEEeCccccCCCCCCCCCCcCCCCC---cEEEEeec-cceEEEcCCCC----CCCC
Q 018026           48 ANQTFTVGDTLVFNFAAG---NHDVTRVTQSSFNACNTTSPLSRTTNSP---ASVTLTAS-GPHYFICSFPG----HCLG  116 (362)
Q Consensus        48 ~~~~f~vGD~L~F~~~~~---~h~V~~V~~~~y~~C~~~~~i~~~~~G~---~~v~l~~~-G~~yFic~~~~----HC~~  116 (362)
                      --++++.||.|.+++.+.   .|++..= .-.+.......+......|.   ..++++.+ |.+||.|....    |=..
T Consensus        46 P~i~~~~Gd~v~v~~~N~l~~~~siH~H-G~~~~~~~dG~~~~~i~pg~~~~y~~~~~~~aGt~wyH~H~~~~~~~~~~~  124 (140)
T d1kv7a1          46 PAVKLQRGKAVTVDIYNQLTEETTLHWH-GLEVPGEVDGGPQGIIPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAM  124 (140)
T ss_dssp             CEEEEETTCEEEEEEEECSSSCBCCEEE-TCCCCGGGSCCTTCCBCTTCEEEEEEECCSCSEEEEEECCCTTTHHHHHHT
T ss_pred             ceEEEECCCEEEEEEEeCccccccEeee-eeecCCccCCCccceEccCCceeEEEEEecCCeeEEEEECCCCChHHHHhC
Confidence            346889999999988754   4454321 00111111011111111222   34566664 99999997532    3348


Q ss_pred             CCeeeEEeecC
Q 018026          117 GQKLAINVSAR  127 (362)
Q Consensus       117 Gmk~~I~V~~~  127 (362)
                      ||..+|.|...
T Consensus       125 Gl~G~liV~~~  135 (140)
T d1kv7a1         125 GLAGLVVIEDD  135 (140)
T ss_dssp             TCCEEEEEECH
T ss_pred             CCeEEEEECCc
Confidence            99999988653