Citrus Sinensis ID: 018064

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-
MVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGGLRQIILQAKDYKFYS
cccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
ccccccccccccccHHHHHHHHHHcccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHcHEEHEHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHEHHHHHHHHEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
mvemhemvpgkrfdryHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCkepckeikLSYFIMIFASVHFVLshlpnfnaiAGVSLAAAVMSLSYSTIAWSasvrkgvqpdvaygykaktaagTVFNFFSALGDVAFAYAGHNVVLEIQatipstpekpskgpmwrGVVVAYIVVALCYFPVALIGYWMFGNKVEDNIllslekptwlIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKklnfsptrLLRFVVRNLYVASTMFIgitfpffggllgffggfafapttyflPCIIWLAiykprkyslsWCINWICIVLGLCLMILSPIGGLRQIILQAKDYKFYS
mvemhemvpgkrFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIpstpekpskgpMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGGLRQIILQAKDYKFYS
MVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMfigitfpffggllgffggfafaptTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGGLRQIILQAKDYKFYS
************FDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATI**********PMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGGLRQIILQAKDYKF**
MVEMHE*VPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIP*******KGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGGLRQIILQAKDYKFYS
********PGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGGLRQIILQAKDYKFYS
****HEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGGLRQIILQAKDYKFYS
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
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MVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGGLRQIILQAKDYKFYS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query361 2.2.26 [Sep-21-2011]
Q9FKS8446 Lysine histidine transpor yes no 0.997 0.807 0.853 0.0
Q9C733453 Lysine histidine transpor no no 0.997 0.794 0.772 1e-162
Q9LRB5441 Lysine histidine transpor no no 0.997 0.816 0.747 1e-151
Q9SR44441 Lysine histidine transpor no no 0.997 0.816 0.764 1e-148
O22719451 Lysine histidine transpor no no 0.986 0.789 0.647 1e-139
Q9SS86455 Lysine histidine transpor no no 0.969 0.769 0.644 1e-135
Q9C6M2440 Lysine histidine transpor no no 0.997 0.818 0.603 1e-120
Q9C9J0448 Lysine histidine transpor no no 0.997 0.803 0.571 1e-103
Q9SX98519 Lysine histidine transpor no no 0.994 0.691 0.348 1e-60
Q84WE9478 Lysine histidine transpor no no 0.930 0.702 0.301 6e-44
>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1 Back     alignment and function desciption
 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/361 (85%), Positives = 333/361 (92%), Gaps = 1/361 (0%)

Query: 1   MVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVH 60
           MVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVE+GVCIVYMVTGGKSL K H
Sbjct: 87  MVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEIGVCIVYMVTGGKSLKKFH 146

Query: 61  ELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVR 120
           EL+C + CK IKL+YFIMIFASVHFVLSHLPNFN+I+GVSLAAAVMSLSYSTIAW++S  
Sbjct: 147 ELVCDD-CKPIKLTYFIMIFASVHFVLSHLPNFNSISGVSLAAAVMSLSYSTIAWASSAS 205

Query: 121 KGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMW 180
           KGVQ DV YGYKAKT AGTVFNFFS LGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMW
Sbjct: 206 KGVQEDVQYGYKAKTTAGTVFNFFSGLGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMW 265

Query: 181 RGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQ 240
           RGV+VAYIVVALCYFPVAL+GY++FGN VEDNIL+SL+KP WLI  AN FVV+HVIGSYQ
Sbjct: 266 RGVIVAYIVVALCYFPVALVGYYIFGNGVEDNILMSLKKPAWLIATANIFVVIHVIGSYQ 325

Query: 241 IYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAF 300
           IYAMPVFDM+ETLLVKKLNF PT  LRF VRN YVA+TMF+G+TFPFFGGLL FFGGFAF
Sbjct: 326 IYAMPVFDMMETLLVKKLNFRPTTTLRFFVRNFYVAATMFVGMTFPFFGGLLAFFGGFAF 385

Query: 301 APTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGGLRQIILQAKDYKFY 360
           APTTYFLPC+IWLAIYKP+KYSLSW  NW+CIV GL LM+LSPIGGLR I++QAK YKFY
Sbjct: 386 APTTYFLPCVIWLAIYKPKKYSLSWWANWVCIVFGLFLMVLSPIGGLRTIVIQAKGYKFY 445

Query: 361 S 361
           S
Sbjct: 446 S 446
Amino acid-proton symporter. Transporter with a broad specificity for histidine, lysine, glutamic acid, alanine, serine, proline and glycine. Involved in both apoplastic transport of amino acids in leaves and their uptake by roots.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9C733|LHTL1_ARATH Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2 Back     alignment and function description
>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1 Back     alignment and function description
>sp|Q9SR44|LHTL2_ARATH Lysine histidine transporter-like 2 OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1 Back     alignment and function description
>sp|O22719|LHTL3_ARATH Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2 Back     alignment and function description
>sp|Q9SS86|LHTL4_ARATH Lysine histidine transporter-like 4 OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2 Back     alignment and function description
>sp|Q9C6M2|LHTL6_ARATH Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1 Back     alignment and function description
>sp|Q9C9J0|LHTL5_ARATH Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2 Back     alignment and function description
>sp|Q9SX98|LHTL8_ARATH Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1 Back     alignment and function description
>sp|Q84WE9|LHTL7_ARATH Lysine histidine transporter-like 7 OS=Arabidopsis thaliana GN=At4g35180 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query361
30693663446 Lysine histidine transporter 1 [Arabidop 0.997 0.807 0.853 0.0
30693666445 Lysine histidine transporter 1 [Arabidop 0.997 0.808 0.853 0.0
297805586445 hypothetical protein ARALYDRAFT_916150 [ 0.997 0.808 0.853 0.0
356574036450 PREDICTED: lysine histidine transporter 0.997 0.8 0.839 1e-180
357454949 487 Lysine/histidine transporter [Medicago t 1.0 0.741 0.842 1e-174
356558767 465 PREDICTED: lysine histidine transporter 1.0 0.776 0.814 1e-173
356571417451 PREDICTED: lysine histidine transporter 0.997 0.798 0.839 1e-172
255537003440 amino acid transporter, putative [Ricinu 0.997 0.818 0.875 1e-171
225452181442 PREDICTED: lysine histidine transporter 0.997 0.814 0.844 1e-171
356558769450 PREDICTED: lysine histidine transporter 0.997 0.8 0.850 1e-168
>gi|30693663|ref|NP_851109.1| Lysine histidine transporter 1 [Arabidopsis thaliana] gi|75262627|sp|Q9FKS8.1|LHT1_ARATH RecName: Full=Lysine histidine transporter 1 gi|14194151|gb|AAK56270.1|AF367281_1 AT5g40780/K1B16_3 [Arabidopsis thaliana] gi|10177957|dbj|BAB11340.1| amino acid permease [Arabidopsis thaliana] gi|22137070|gb|AAM91380.1| At5g40780/K1B16_3 [Arabidopsis thaliana] gi|332007210|gb|AED94593.1| Lysine histidine transporter 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/361 (85%), Positives = 333/361 (92%), Gaps = 1/361 (0%)

Query: 1   MVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVH 60
           MVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVE+GVCIVYMVTGGKSL K H
Sbjct: 87  MVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEIGVCIVYMVTGGKSLKKFH 146

Query: 61  ELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVR 120
           EL+C + CK IKL+YFIMIFASVHFVLSHLPNFN+I+GVSLAAAVMSLSYSTIAW++S  
Sbjct: 147 ELVCDD-CKPIKLTYFIMIFASVHFVLSHLPNFNSISGVSLAAAVMSLSYSTIAWASSAS 205

Query: 121 KGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMW 180
           KGVQ DV YGYKAKT AGTVFNFFS LGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMW
Sbjct: 206 KGVQEDVQYGYKAKTTAGTVFNFFSGLGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMW 265

Query: 181 RGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQ 240
           RGV+VAYIVVALCYFPVAL+GY++FGN VEDNIL+SL+KP WLI  AN FVV+HVIGSYQ
Sbjct: 266 RGVIVAYIVVALCYFPVALVGYYIFGNGVEDNILMSLKKPAWLIATANIFVVIHVIGSYQ 325

Query: 241 IYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAF 300
           IYAMPVFDM+ETLLVKKLNF PT  LRF VRN YVA+TMF+G+TFPFFGGLL FFGGFAF
Sbjct: 326 IYAMPVFDMMETLLVKKLNFRPTTTLRFFVRNFYVAATMFVGMTFPFFGGLLAFFGGFAF 385

Query: 301 APTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGGLRQIILQAKDYKFY 360
           APTTYFLPC+IWLAIYKP+KYSLSW  NW+CIV GL LM+LSPIGGLR I++QAK YKFY
Sbjct: 386 APTTYFLPCVIWLAIYKPKKYSLSWWANWVCIVFGLFLMVLSPIGGLRTIVIQAKGYKFY 445

Query: 361 S 361
           S
Sbjct: 446 S 446

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|30693666|ref|NP_198894.2| Lysine histidine transporter 1 [Arabidopsis thaliana] gi|332007211|gb|AED94594.1| Lysine histidine transporter 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297805586|ref|XP_002870677.1| hypothetical protein ARALYDRAFT_916150 [Arabidopsis lyrata subsp. lyrata] gi|297316513|gb|EFH46936.1| hypothetical protein ARALYDRAFT_916150 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356574036|ref|XP_003555159.1| PREDICTED: lysine histidine transporter 1-like [Glycine max] Back     alignment and taxonomy information
>gi|357454949|ref|XP_003597755.1| Lysine/histidine transporter [Medicago truncatula] gi|355486803|gb|AES68006.1| Lysine/histidine transporter [Medicago truncatula] Back     alignment and taxonomy information
>gi|356558767|ref|XP_003547674.1| PREDICTED: lysine histidine transporter 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356571417|ref|XP_003553873.1| PREDICTED: lysine histidine transporter 1-like [Glycine max] Back     alignment and taxonomy information
>gi|255537003|ref|XP_002509568.1| amino acid transporter, putative [Ricinus communis] gi|223549467|gb|EEF50955.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225452181|ref|XP_002265308.1| PREDICTED: lysine histidine transporter 1 [Vitis vinifera] gi|296090261|emb|CBI40080.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356558769|ref|XP_003547675.1| PREDICTED: lysine histidine transporter 1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query361
TAIR|locus:2154815446 LHT1 "lysine histidine transpo 0.997 0.807 0.795 2.7e-155
UNIPROTKB|Q85V22441 ht "Histidine amino acid trans 1.0 0.818 0.743 6.8e-143
TAIR|locus:2008154453 AT1G48640 [Arabidopsis thalian 0.997 0.794 0.714 5.5e-141
TAIR|locus:2008605441 AT1G67640 "AT1G67640" [Arabido 0.997 0.816 0.709 4e-138
TAIR|locus:2024071441 LHT2 "lysine histidine transpo 0.997 0.816 0.695 9.5e-137
TAIR|locus:2008435451 AT1G61270 [Arabidopsis thalian 0.972 0.778 0.613 1.1e-119
TAIR|locus:2031215440 AT1G25530 [Arabidopsis thalian 0.997 0.818 0.548 4.4e-107
TAIR|locus:2013056448 AT1G71680 [Arabidopsis thalian 0.994 0.801 0.534 3.5e-98
TAIR|locus:2015383519 AT1G47670 [Arabidopsis thalian 0.994 0.691 0.327 8.6e-56
TAIR|locus:2132816478 LHT7 "LYS/HIS transporter 7" [ 0.988 0.746 0.271 3.6e-41
TAIR|locus:2154815 LHT1 "lysine histidine transporter 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1514 (538.0 bits), Expect = 2.7e-155, P = 2.7e-155
 Identities = 287/361 (79%), Positives = 310/361 (85%)

Query:     1 MVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVH 60
             MVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVE+GVCIVYMVTGGKSL K H
Sbjct:    87 MVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEIGVCIVYMVTGGKSLKKFH 146

Query:    61 ELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVR 120
             EL+C + CK IKL+YFIMIFASVHFVLSHLPNFN+I+GVSLAAAVMSLSYSTIAW++S  
Sbjct:   147 ELVCDD-CKPIKLTYFIMIFASVHFVLSHLPNFNSISGVSLAAAVMSLSYSTIAWASSAS 205

Query:   121 KGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMW 180
             KGVQ DV YGYKAKT AGTVFNFFS LGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMW
Sbjct:   206 KGVQEDVQYGYKAKTTAGTVFNFFSGLGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMW 265

Query:   181 RGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQ 240
             RGV+VAYIVVALCYFPVAL+GY++FGN VEDNIL+SL+KP WLI  AN FVV+HVIGSYQ
Sbjct:   266 RGVIVAYIVVALCYFPVALVGYYIFGNGVEDNILMSLKKPAWLIATANIFVVIHVIGSYQ 325

Query:   241 IYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMXXXXXXXXXXXXXXXXXXXXX 300
             IYAMPVFDM+ETLLVKKLNF PT  LRF VRN YVA+TM                     
Sbjct:   326 IYAMPVFDMMETLLVKKLNFRPTTTLRFFVRNFYVAATMFVGMTFPFFGGLLAFFGGFAF 385

Query:   301 XXXTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGGLRQIILQAKDYKFY 360
                TYFLPC+IWLAIYKP+KYSLSW  NW+CIV GL LM+LSPIGGLR I++QAK YKFY
Sbjct:   386 APTTYFLPCVIWLAIYKPKKYSLSWWANWVCIVFGLFLMVLSPIGGLRTIVIQAKGYKFY 445

Query:   361 S 361
             S
Sbjct:   446 S 446
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006865 "amino acid transport" evidence=ISS;RCA
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IMP
GO:0016020 "membrane" evidence=ISS
GO:0043090 "amino acid import" evidence=RCA;IMP
GO:0080167 "response to karrikin" evidence=IEP
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006820 "anion transport" evidence=RCA
GO:0006862 "nucleotide transport" evidence=RCA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0015696 "ammonium transport" evidence=RCA
GO:0015802 "basic amino acid transport" evidence=RCA
GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA
GO:0043069 "negative regulation of programmed cell death" evidence=RCA
GO:0043269 "regulation of ion transport" evidence=RCA
UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
TAIR|locus:2008154 AT1G48640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008605 AT1G67640 "AT1G67640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008435 AT1G61270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031215 AT1G25530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013056 AT1G71680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015383 AT1G47670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132816 LHT7 "LYS/HIS transporter 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FKS8LHT1_ARATHNo assigned EC number0.85310.99720.8071yesno
Q9LRB5LHT2_ARATHNo assigned EC number0.74790.99720.8163nono
Q9SR44LHTL2_ARATHNo assigned EC number0.76450.99720.8163nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query361
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 9e-91
PLN03074473 PLN03074, PLN03074, auxin influx permease; Provisi 3e-07
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 5e-05
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  277 bits (711), Expect = 9e-91
 Identities = 125/352 (35%), Positives = 183/352 (51%), Gaps = 16/352 (4%)

Query: 6   EMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCK 65
           + V GKR   Y +LG   FG K G  +++   L+   GVCI Y++  G +L  + +    
Sbjct: 62  DKVKGKRRKSYGDLGYRLFGPK-GKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFFD 120

Query: 66  EPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQP 125
                I L YFI+IF  +   LS +PN +A++ +SL AAV SL Y  I   +    GV  
Sbjct: 121 T--CHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSL-YIVILVLSVAELGVLT 177

Query: 126 DVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVV 185
               G         +   F A+G + FA+ GH V+L IQ T+ S P K     M + ++ 
Sbjct: 178 AQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKS-PSK--FKAMTKVLLT 234

Query: 186 AYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMP 245
           A I+V + Y  V L+GY  FGN V+ NILL+L K  WLI +AN  +V+H++ SY + A P
Sbjct: 235 AIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANLLLVLHLLLSYPLQAFP 294

Query: 246 VFDMIETLLVKK----LNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFA 301
           +  ++E LL +K     +   ++LLR V+R+  V  T  I I+ PF G  L   G  + A
Sbjct: 295 IRQIVENLLFRKGASGKHNPKSKLLRVVIRSGLVVITYLIAISVPFLGDFLSLVGATSGA 354

Query: 302 PTTYFLPCIIWLAIYKPRKYSLSW-----CINWICIVLGLCLMILSPIGGLR 348
           P T+ LP +  L + K +K SL        ++ ICIV+GL LM     G + 
Sbjct: 355 PLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLLMAYGVAGLII 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|215559 PLN03074, PLN03074, auxin influx permease; Provisional Back     alignment and domain information
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 361
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
PLN03074473 auxin influx permease; Provisional 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 99.94
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.77
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.75
PRK15132403 tyrosine transporter TyrP; Provisional 99.68
PRK10483414 tryptophan permease; Provisional 99.67
PRK09664415 tryptophan permease TnaB; Provisional 99.65
PRK13629443 threonine/serine transporter TdcC; Provisional 99.52
TIGR00814397 stp serine transporter. The HAAAP family includes 99.47
PRK10655438 potE putrescine transporter; Provisional 98.84
PRK11021410 putative transporter; Provisional 98.84
PRK10644445 arginine:agmatin antiporter; Provisional 98.83
TIGR00909429 2A0306 amino acid transporter. 98.81
PRK10746461 putative transport protein YifK; Provisional 98.81
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 98.8
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 98.79
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 98.74
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 98.67
TIGR00908442 2A0305 ethanolamine permease. The three genes used 98.66
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 98.59
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 98.57
PRK10249458 phenylalanine transporter; Provisional 98.55
PRK11357445 frlA putative fructoselysine transporter; Provisio 98.55
TIGR00906 557 2A0303 cationic amino acid transport permease. 98.53
PRK11387471 S-methylmethionine transporter; Provisional 98.53
TIGR00913478 2A0310 amino acid permease (yeast). 98.51
PRK10197446 gamma-aminobutyrate transporter; Provisional 98.51
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 98.47
PRK10238456 aromatic amino acid transporter; Provisional 98.46
PRK15049499 L-asparagine permease; Provisional 98.43
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 98.4
TIGR00912359 2A0309 spore germination protein (amino acid perme 98.39
PRK10580457 proY putative proline-specific permease; Provision 98.39
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 98.35
TIGR00930 953 2a30 K-Cl cotransporter. 98.32
TIGR00911501 2A0308 L-type amino acid transporter. 98.29
TIGR00907482 2A0304 amino acid permease (GABA permease). 98.29
COG0531466 PotE Amino acid transporters [Amino acid transport 98.28
PRK10836489 lysine transporter; Provisional 98.18
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 98.17
KOG1287479 consensus Amino acid transporters [Amino acid tran 98.16
PRK15238496 inner membrane transporter YjeM; Provisional 98.14
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 97.98
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 97.87
COG1457442 CodB Purine-cytosine permease and related proteins 97.75
PF03845320 Spore_permease: Spore germination protein; InterPr 97.69
PRK09442483 panF sodium/panthothenate symporter; Provisional 97.57
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.47
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 97.45
KOG1289550 consensus Amino acid transporters [Amino acid tran 97.36
COG3949349 Uncharacterized membrane protein [Function unknown 97.31
TIGR00813407 sss transporter, SSS family. have different number 97.27
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 97.25
PRK12488549 acetate permease; Provisional 97.19
PRK11375484 allantoin permease; Provisional 97.19
COG0833541 LysP Amino acid transporters [Amino acid transport 97.16
KOG1286554 consensus Amino acid transporters [Amino acid tran 97.1
COG0591493 PutP Na+/proline symporter [Amino acid transport a 97.0
PRK11017404 codB cytosine permease; Provisional 96.77
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 96.69
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 96.52
PRK15419502 proline:sodium symporter PutP; Provisional 95.69
PF01566358 Nramp: Natural resistance-associated macrophage pr 95.33
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 94.95
PRK00701439 manganese transport protein MntH; Reviewed 94.66
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 94.39
PRK09395551 actP acetate permease; Provisional 94.36
KOG3832319 consensus Predicted amino acid transporter [Genera 94.24
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 94.04
PRK10484523 putative transporter; Provisional 93.22
COG4147529 DhlC Predicted symporter [General function predict 91.81
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 90.3
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 87.95
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 83.51
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 82.92
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6.1e-49  Score=381.44  Aligned_cols=335  Identities=15%  Similarity=0.205  Sum_probs=267.7

Q ss_pred             cccccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCC--CC-ccchhhHHHHHHHHHHHH
Q 018064           11 KRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEP--CK-EIKLSYFIMIFASVHFVL   87 (361)
Q Consensus        11 ~~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~--~~-~~~~~~~~~i~~~~~lpl   87 (361)
                      ++.+||+|++++++|| +|++++++++.+.++|+|++|+++++|+++.+++.....+  .. ..++..+.++..++++|+
T Consensus       118 ~~~~sY~~la~~~~G~-~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPL  196 (467)
T PTZ00206        118 TNIRTYEGVARVLLGP-WGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPL  196 (467)
T ss_pred             CCCCCHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhc
Confidence            4456999999999997 6779999999999999999999999999998876421100  00 112334455667788999


Q ss_pred             hcCCCCchhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCcc---cccc---ccccccchhhHHHHHHhHHHHccCccchH
Q 018064           88 SHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVA---YGYK---AKTAAGTVFNFFSALGDVAFAYAGHNVVL  161 (361)
Q Consensus        88 ~~~~~l~~L~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~faf~~~~~~~  161 (361)
                      +++|++++|+++|.+++.+++..++.+++.++.++.+++.+   .+.+   +........+.+.++|+++|||.||.+.|
T Consensus       197 s~~r~i~~L~~~S~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~  276 (467)
T PTZ00206        197 VIPRHIDSLRYVSTIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAY  276 (467)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhH
Confidence            99999999999999999876665555555555444333211   1110   01111222468899999999999999999


Q ss_pred             hhhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhHHHhhccCcchhhhhhCC-CCchHHHHHHHHHHHHHHHHhhc
Q 018064          162 EIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSL-EKPTWLIVMANFFVVVHVIGSYQ  240 (361)
Q Consensus       162 ~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~~~il~n~-~~~~~~~~~~~~~~~i~~~~s~p  240 (361)
                      |+++||    +||+.+++.++...++.++.++|..+|++||+.||++++++++.|+ |.++....++++++.+.++.+||
T Consensus       277 ~i~~~M----~~~t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~syp  352 (467)
T PTZ00206        277 EVYMDM----TNRSVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYA  352 (467)
T ss_pred             HHHHhh----cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhh
Confidence            999999    7777777779999999999999999999999999999999999999 55677788899999999999999


Q ss_pred             cccccHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHHHHHhhcCchhhHHHHhhhhhhhHHHHHHHHHHHHHHh---C
Q 018064          241 IYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIY---K  317 (361)
Q Consensus       241 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~v~~l~Ga~~~~~~~filP~l~~~~~~---~  317 (361)
                      ++.+|+|+.+++.+..+.+. .+++++...+..+.+.++++|+.+|+++.+++++||++++.++|++|+++|++..   +
T Consensus       353 L~~~p~r~~i~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~  431 (467)
T PTZ00206        353 LLGMACRNALYDVIGWDARK-VAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTW  431 (467)
T ss_pred             hhhhhHHHHHHHHhCCCccc-CchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccH
Confidence            99999999999987443222 2345666666777778899999999999999999999999999999999999842   2


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018064          318 PRKYSLSWCINWICIVLGLCLMILSPIGGLRQII  351 (361)
Q Consensus       318 ~~~~~~~~~~~~~i~~~g~~~~v~gt~~si~~li  351 (361)
                      ++...++++.+++++++|++..+.|||.|+.+.+
T Consensus       432 ~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~  465 (467)
T PTZ00206        432 QKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT  465 (467)
T ss_pred             HhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence            2223335568999999999999999999999876

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query361
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.11
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 98.9
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 98.83
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 97.79
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 96.96
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 95.45
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.11  E-value=2e-09  Score=103.34  Aligned_cols=299  Identities=14%  Similarity=0.081  Sum_probs=152.4

Q ss_pred             cccccCCCcccccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHH
Q 018064            3 EMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFAS   82 (361)
Q Consensus         3 ~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~   82 (361)
                      |+....|..  .++-+..++.+||.+| ++..+...+.......++....++.+....+...    +++....+.++...
T Consensus        62 el~~~~p~~--Gg~y~~~~~~~G~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  134 (445)
T 3l1l_A           62 KMSFLDPSP--GGSYAYARRCFGPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK----DPWVLTITCVVVLW  134 (445)
T ss_dssp             HHHHHCCCT--TTHHHHHHHHSCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG----SHHHHHHHHHHHHH
T ss_pred             HHHccCCCC--CCchhhHHhHcCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc----ccHHHHHHHHHHHH
Confidence            333444443  3667778999999888 7888777777666666666666665554332211    11222222222221


Q ss_pred             HHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccccccccccchhhHHHHHHhHHHHccCccchHh
Q 018064           83 VHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLE  162 (361)
Q Consensus        83 ~~lpl~~~~~l~~L~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~  162 (361)
                       .+-....+..|....++.+.....+...+++..........+....+.+ .....++.++..++....|+|.+......
T Consensus       135 -~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~  212 (445)
T 3l1l_A          135 -IFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASV  212 (445)
T ss_dssp             -HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC------------HHHHHHHHHHTTTTTTHHHH
T ss_pred             -HHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhcccccC-ccCCccHHHHHHHHHHHHHHHHhHHHHHH
Confidence             2222223455666666555544333322222222222211111100110 11112356788899999999999999999


Q ss_pred             hhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhHHHhhccCcch----hhh---hhCCCCchHHHHHHHHHHHHHH
Q 018064          163 IQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVE----DNI---LLSLEKPTWLIVMANFFVVVHV  235 (361)
Q Consensus       163 i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~----~~i---l~n~~~~~~~~~~~~~~~~i~~  235 (361)
                      ..+|+    |||+|. .+|++..+..++.++|...........+.+..    ++.   .++.. +++...+..+...+..
T Consensus       213 ~~~e~----k~p~r~-ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-g~~~~~~~~~~~~~~~  286 (445)
T 3l1l_A          213 AAGVV----KNPKRN-VPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMAL-GDTAGAIVSFCAAAGC  286 (445)
T ss_dssp             GGGGB----SSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHH-CTTHHHHHHHHHHHHH
T ss_pred             HHHHh----cCcccc-ccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence            99999    788654 56999999999999999988877766654321    111   11111 1234444455555555


Q ss_pred             HHhhccccccHHHHHHHHHhhhc-----CC--CcchhhHHHHHHHHHHHHHHHHhh--cC----chhhHHHHhhhhhhhH
Q 018064          236 IGSYQIYAMPVFDMIETLLVKKL-----NF--SPTRLLRFVVRNLYVASTMFIGIT--FP----FFGGLLGFFGGFAFAP  302 (361)
Q Consensus       236 ~~s~pl~~~p~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~iA~~--vp----~~~~v~~l~Ga~~~~~  302 (361)
                      +.+.--......+.+...-+.+.     .+  +++.+.+-..-...  ++.++...  .|    .++.+.++.+  .+..
T Consensus       287 ~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~P~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~  362 (445)
T 3l1l_A          287 LGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGI--LMTIFQLSSISPNATKEFGLVSSVSV--IFTL  362 (445)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCCTTCCCHHHHHHHHH--HHHHHHHSTTSHHHHCCCHHHHHHHH--HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcCCCCCCHHHHHHHHH--HHHHHHHHHHcccHHHHHHHHHHHHH--HHHH
Confidence            44443333444443333222110     00  11112222211111  12222222  23    2455555543  3457


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q 018064          303 TTYFLPCIIWLAIYKPRK  320 (361)
Q Consensus       303 ~~filP~l~~~~~~~~~~  320 (361)
                      +.|.++++.+++.+|+++
T Consensus       363 ~~y~~~~~~~~~~r~~~~  380 (445)
T 3l1l_A          363 VPYLYTCAALLLLGHGHF  380 (445)
T ss_dssp             HHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHHHHHHHHHhhcCc
Confidence            899999999999987664
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00