Citrus Sinensis ID: 018081
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 361 | ||||||
| 224103959 | 360 | predicted protein [Populus trichocarpa] | 0.947 | 0.95 | 0.820 | 1e-167 | |
| 224059713 | 360 | predicted protein [Populus trichocarpa] | 0.947 | 0.95 | 0.820 | 1e-166 | |
| 296083855 | 359 | unnamed protein product [Vitis vinifera] | 0.986 | 0.991 | 0.813 | 1e-165 | |
| 225436644 | 367 | PREDICTED: uncharacterized protein LOC10 | 0.988 | 0.972 | 0.797 | 1e-164 | |
| 323370570 | 357 | root determined nodulation 1 [Medicago t | 0.986 | 0.997 | 0.762 | 1e-163 | |
| 225465845 | 362 | PREDICTED: uncharacterized protein LOC10 | 0.966 | 0.964 | 0.773 | 1e-162 | |
| 357493927 | 351 | hypothetical protein MTR_5g089520 [Medic | 0.963 | 0.991 | 0.767 | 1e-161 | |
| 318054555 | 334 | NOD3 [Pisum sativum] gi|318054557|gb|ADV | 0.925 | 1.0 | 0.790 | 1e-158 | |
| 224057278 | 362 | predicted protein [Populus trichocarpa] | 0.972 | 0.969 | 0.747 | 1e-156 | |
| 356577618 | 368 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.980 | 0.722 | 1e-156 |
| >gi|224103959|ref|XP_002313261.1| predicted protein [Populus trichocarpa] gi|222849669|gb|EEE87216.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 593 bits (1529), Expect = e-167, Method: Compositional matrix adjust.
Identities = 284/346 (82%), Positives = 312/346 (90%), Gaps = 4/346 (1%)
Query: 20 GFFFATYNLLTMVIQNKAADE---IGKLNPLTQMPEKTGG-GNSGMRFHVALTATDAIYS 75
GFFFATYNLLT++IQ K + G +P+T MP + G S ++FHVALTATDA YS
Sbjct: 15 GFFFATYNLLTLIIQYKDSSTGLGSGISDPVTGMPANSWKLGKSNLKFHVALTATDAPYS 74
Query: 76 QWQSRIMYYWYKKVKDMPRSDMGKFTRILHSGKADNLMDEIPSFVVDPLPEGLDRGYIVL 135
QWQ R+MYYWYKK+K MP SDMGKFTR+LHSGK D+LMDEIP+F+VDPLP+GLDRGYIVL
Sbjct: 75 QWQCRVMYYWYKKMKSMPGSDMGKFTRVLHSGKGDHLMDEIPTFIVDPLPDGLDRGYIVL 134
Query: 136 NRPWAFVQWLEKATIEEEYILMAEPDHIFVKPLPNLAQGNHPAGFPFFYIKPAEHEKIIR 195
NRPWAFVQWLEKATIEE+YILMAEPDHIF PLPNLA G++PAGFPFFYIKP EHEKI+R
Sbjct: 135 NRPWAFVQWLEKATIEEDYILMAEPDHIFANPLPNLAHGDNPAGFPFFYIKPTEHEKIVR 194
Query: 196 KFYPEEMGPVTNVDPIGNSPVIIKKYLLEEISPTWLNVSLRMKDDHETDKQFGWVLEMYA 255
KFYPEE GPVT+VDPIGNSPVIIKK LLEEISPTW+NVSLRMKDD ETDK FGWVLEMYA
Sbjct: 195 KFYPEEKGPVTDVDPIGNSPVIIKKSLLEEISPTWVNVSLRMKDDPETDKAFGWVLEMYA 254
Query: 256 YAVASALHGVRHILRKDFMLQPPWDPEVGKRFILHYTYGCDYNLKGELTYGKIGEWRFDK 315
YAVASALHGVRHILRKDFMLQPPWD EVGKRFI+HYTYGCDYN+KGELTYGKIGEWRFDK
Sbjct: 255 YAVASALHGVRHILRKDFMLQPPWDLEVGKRFIIHYTYGCDYNMKGELTYGKIGEWRFDK 314
Query: 316 RSFLNGPPPKNLSLPPPGVPESVVRLVKMVNEATANIPGWDTVTRG 361
RS+L+GPPPKNL+LPPPGVPESVVRLVKMVNEATANIPGWD++ G
Sbjct: 315 RSYLSGPPPKNLTLPPPGVPESVVRLVKMVNEATANIPGWDSLNSG 360
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224059713|ref|XP_002299978.1| predicted protein [Populus trichocarpa] gi|222847236|gb|EEE84783.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|296083855|emb|CBI24243.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|225436644|ref|XP_002280257.1| PREDICTED: uncharacterized protein LOC100250010 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|323370570|gb|ADV35716.2| root determined nodulation 1 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|225465845|ref|XP_002264860.1| PREDICTED: uncharacterized protein LOC100244671 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|357493927|ref|XP_003617252.1| hypothetical protein MTR_5g089520 [Medicago truncatula] gi|355518587|gb|AET00211.1| hypothetical protein MTR_5g089520 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|318054555|gb|ADV35717.1| NOD3 [Pisum sativum] gi|318054557|gb|ADV35718.1| NOD3 [Pisum sativum] | Back alignment and taxonomy information |
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| >gi|224057278|ref|XP_002299202.1| predicted protein [Populus trichocarpa] gi|222846460|gb|EEE84007.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356577618|ref|XP_003556921.1| PREDICTED: uncharacterized protein LOC100786003 [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 361 | ||||||
| TAIR|locus:2185046 | 358 | AT5G13500 "AT5G13500" [Arabido | 0.925 | 0.932 | 0.687 | 5.9e-128 | |
| TAIR|locus:504955105 | 366 | AT5G25265 "AT5G25265" [Arabido | 0.858 | 0.846 | 0.628 | 5.2e-113 | |
| TAIR|locus:2059573 | 358 | AT2G25260 "AT2G25260" [Arabido | 0.844 | 0.851 | 0.639 | 1.1e-112 | |
| TAIR|locus:2082314 | 802 | AT3G01720 "AT3G01720" [Arabido | 0.648 | 0.291 | 0.246 | 1.5e-09 |
| TAIR|locus:2185046 AT5G13500 "AT5G13500" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1256 (447.2 bits), Expect = 5.9e-128, P = 5.9e-128
Identities = 233/339 (68%), Positives = 268/339 (79%)
Query: 25 TYNLLTMVIQNKA----ADEIGKLNPLTQMPEKTGGGNSGMR-FHVALTATDAIYSQWQS 79
TYNLLT+++ N++ +D L+P+ QMP S FHVALTATDA Y++WQ
Sbjct: 20 TYNLLTLIVHNRSGVSNSDGSPLLDPVVQMPLNIRKAKSSPAPFHVALTATDAPYNKWQC 79
Query: 80 RIMYYWYKKVKDMPRSDMGKFTRILHSGKADNLMDEIPSFVVDPLPEGLDRGYIVLNRPW 139
RIMYYWYK+ K +P SDMG FTRILHSG +DNLMDEIP+FVVDPLP GLDRGY+VLNRPW
Sbjct: 80 RIMYYWYKQKKALPGSDMGGFTRILHSGNSDNLMDEIPTFVVDPLPPGLDRGYVVLNRPW 139
Query: 140 AFVQWLEKATIEEEYILMAEPDHIFVKPLPNLAQGNHPAGFPFFYIKPAEHEKIIRKFYP 199
AFVQWLE+ATI+E+Y+LMAEPDH+FV PLPNLA G PA FPFFYI P ++E I+RK+YP
Sbjct: 140 AFVQWLERATIKEDYVLMAEPDHVFVNPLPNLAVGGFPAAFPFFYITPEKYENIVRKYYP 199
Query: 200 EEMGPVTNVDPIGNSPVIIKKYLLEEISPTWLNVSLRMKDDHETDKQFGWVLEMYAYAVA 259
EMGPVTN+DPIGNSPVII K LE+I+PTW+NVSL MK+D ETDK FGWVLEMY YA+A
Sbjct: 200 AEMGPVTNIDPIGNSPVIISKESLEKIAPTWMNVSLTMKNDPETDKAFGWVLEMYGYAIA 259
Query: 260 SALHGVRHILRKDFMLQPPWDPEVGKRFILHYTYGCDYNLKGELTYGKIGEWRFDKRSFX 319
SA+HGVRHILRKDFMLQPPWD +FI+HYTYGCDYN+KGELTYGKIGEWRFDKRS
Sbjct: 260 SAIHGVRHILRKDFMLQPPWDLSTKGKFIIHYTYGCDYNMKGELTYGKIGEWRFDKRSHL 319
Query: 320 XXXXXXXXXXXXXXXXESVVRLVKMVNEATANIPGWDTV 358
ESVV LVKMVNEATA IP WDT+
Sbjct: 320 RGPPPRNMSLPPPGVPESVVTLVKMVNEATATIPNWDTL 358
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| TAIR|locus:504955105 AT5G25265 "AT5G25265" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2059573 AT2G25260 "AT2G25260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2082314 AT3G01720 "AT3G01720" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
No hit with probability above 80.00
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 361 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-05 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
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Score = 44.1 bits (103), Expect = 6e-05
Identities = 48/378 (12%), Positives = 94/378 (24%), Gaps = 149/378 (39%)
Query: 82 MYYWYKK---------VKDMPRSDMGKFTR-ILHSGKADNLMDEIPSFVVDPLPEGLDRG 131
Y YK V + D+ + IL + D+++ + +
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS---------KDAVSGT 64
Query: 132 Y----IVLNRPWAFVQWLEKATIEEEYILMAEPDHIFVKPLPNLAQGNHPAGFPFFYIKP 187
+L++ VQ + + Y + P + P+
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK---------TEQRQPSM-------- 107
Query: 188 AEHEKIIRKFYPEEMGPVTNVDPIGNSPVIIKKY-------------LLEEISP------ 228
+ + Y E+ D + N + KY L E+ P
Sbjct: 108 ------MTRMYIEQ------RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 229 --------TWL-NVSLRMKDDHETDKQFG----WV-----------LEM----------- 253
TW+ ++ + W+ LEM
Sbjct: 156 DGVLGSGKTWVALDVCL---SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 254 ------YAYAVASALHGVRHILRKDFMLQPP-----------WDPEVGKRFILHYTYGC- 295
++ + +H ++ LR + P + + F C
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELR-RLLKSKPYENCLLVLLNVQNAKAWNAF----NLSCK 267
Query: 296 ------DYNLKGELTYGKIGEWRFDKRSFLNGPP------PKNLSLPPPGVPESVV---- 339
+ L+ D S P K L P +P V+
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 340 RLVKMVNEATANIPG-WD 356
R + ++ E+ + WD
Sbjct: 328 RRLSIIAESIRDGLATWD 345
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Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00