Citrus Sinensis ID: 018092

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-
MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIGMYPLLHPGQNEFFYQSCTNLPASPGSVRGSFTFVPGRLADPKGSPFEVVVAEFPLQRPDYIF
ccccccHHHHHHHHHHHHHHHHHHcHHHHHHccccccHHHHHHHHHHccccccHHHHHHHHHHccccccccccccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHcccccccccEEEEEcccccccEEEEEcccccEEEcccccccccccccccccccHHccccccccccccHHHHHHHHHHHHHccccEEEEccccccccccccccccccccccccccEEEEEEEEEccccccccccccEEEEEEEEEEEccccccccccccccEEEEEEEEEEEEccccEEEEEccccccccEEEccccccEEEcccEEEccccEEEEEEEEEEEcccccccccEEEEEEcccccccccccc
ccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccHHHHHHHHHHcccccccccEEEEEEEcccEEccccccccccEEEccccccHHcEEEEEEccHHHHHHHHHHHHHHccccccccEEEEEEcccccccEEEEEccccEEEEEEEEccccccEEccccHHHHHHccccccccccHHHHHHHHHHHHHHHcccEEEEcccccEEEEEccccccccEEEEcccEEEEEEEEEcccccccccccccEEEEEEEEEEEcccccEEEccccccEEEEEEEEEEEccccEEEEEEcccEEcccccEcccccEEEEEcccEcccccccEEEEEEEEEcccccccccEEEEEEcccEcccccccc
MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLkvklpvptrilyrfcdgqecqtddfesigamgliggySFYGHLVNVYLIPLSHIIMETKEIRrhldfpgrdKYVVVAFSSTysekffflnctngqlyvgtknllsdgemipcvPNALIAlghgcnsdqqQDGMLLWLEEHGRRLHNGIIRlrdeenlkfinlfpeepplcsiavtngvkirasavfipeladpesdteKYLFAYSIRMsllpegcvingmtfsscqlQRRHWIIHANNVVVSVVSGEavigmypllhpgqneffyqsctnlpaspgsvrgsftfvpgrladpkgspfevvvaefplqrpdyif
mypwplvkrvkRCWDRLKNWLAENFPEAKATLRKGASEADIQQLekslkvklpvpTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASAVfipeladpesDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIGMYPLLHPGQNEFFYQSCTNLPASPGSVRGSFTFVPGRladpkgspfevvvaefplqrpdyif
MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHAnnvvvsvvsGEAVIGMYPLLHPGQNEFFYQSCTNLPASPGSVRGSFTFVPGRLADPKGSPFEVVVAEFPLQRPDYIF
**PWPLVKRVKRCWDRLKNWLAENFPEAKA*************LEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIGMYPLLHPGQNEFFYQSCTNLPASPGSVRGSFTFVPGRLAD****PFEVVVAEFP********
**PWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIGMYPLLHPGQNEFFYQSCTNLPASPGSVRGSFTFVPGRLADPKGSPFEVVVAEFPLQRPDYIF
MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIGMYPLLHPGQNEFFYQSCTNLPASPGSVRGSFTFVPGRLADPKGSPFEVVVAEFPLQRPDYIF
MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIGMYPLLHPGQNEFFYQSCTNLPASPGSVRGSFTFVPGRLADPKGSPFEVVVAEFPLQRPDYIF
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIGMYPLLHPGQNEFFYQSCTNLPASPGSVRGSFTFVPGRLADPKGSPFEVVVAEFPLQRPDYIF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query361 2.2.26 [Sep-21-2011]
Q9LND7436 F-box protein SKIP16 OS=A yes no 0.986 0.816 0.599 1e-126
Q82UC1127 Protein ApaG OS=Nitrosomo yes no 0.318 0.905 0.348 2e-12
Q47AB8127 Protein ApaG OS=Dechlorom yes no 0.318 0.905 0.348 3e-12
Q9UK99471 F-box only protein 3 OS=H no no 0.797 0.611 0.230 7e-12
D4ABP9480 F-box only protein 3 OS=R yes no 0.825 0.620 0.231 9e-12
A6H7H7469 F-box only protein 3 OS=B yes no 0.828 0.637 0.226 2e-11
Q2IGT4125 Protein ApaG OS=Anaeromyx yes no 0.332 0.96 0.345 5e-11
Q9DC63480 F-box only protein 3 OS=M yes no 0.825 0.620 0.228 7e-11
Q7VU61131 Protein ApaG OS=Bordetell yes no 0.318 0.877 0.340 3e-10
Q7W393131 Protein ApaG OS=Bordetell yes no 0.318 0.877 0.340 3e-10
>sp|Q9LND7|SKI16_ARATH F-box protein SKIP16 OS=Arabidopsis thaliana GN=SKIP16 PE=1 SV=1 Back     alignment and function desciption
 Score =  451 bits (1159), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/362 (59%), Positives = 266/362 (73%), Gaps = 6/362 (1%)

Query: 1   MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILY 60
           MYPW LVKRV+ CWD LK WL  NFPEAKATLRKG +E D+Q+ E SLKVKLP+PTR+LY
Sbjct: 80  MYPWNLVKRVRLCWDNLKQWLTLNFPEAKATLRKGVTEDDLQEFETSLKVKLPLPTRLLY 139

Query: 61  RFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKE-IRRHLDFPGRD 119
           RF DGQE  + +    G++GLIGGYS Y H VNVYL+PL  ++ ETKE   R L F  R 
Sbjct: 140 RFVDGQELSSPNGLD-GSLGLIGGYSAYSHDVNVYLLPLKEVMRETKESFMRDLGFSSRL 198

Query: 120 KYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQD 179
             +V+A S   S K F L+CT GQL+ GT N     +++PCVP+AL+   H  N DQQQD
Sbjct: 199 DLIVMAASVVASLKIFLLDCTTGQLFTGTSN----RQLLPCVPDALVRSVHDTNGDQQQD 254

Query: 180 GMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASAVFIPELA 239
            MLLWLEEHGRRL  G I +R + N+K I+LFPE PPLCS++VTNGV++RAS+VFIPE++
Sbjct: 255 AMLLWLEEHGRRLQTGTINVRQQNNVKSISLFPEIPPLCSVSVTNGVQVRASSVFIPEIS 314

Query: 240 DPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIG 299
           +       Y +AYSIRMSL+PEGC++NG   SSCQL  RHW+I A+N V+  V+GEAVIG
Sbjct: 315 NLRDQPPAYWYAYSIRMSLMPEGCILNGTHHSSCQLYWRHWVIRADNEVIDNVNGEAVIG 374

Query: 300 MYPLLHPGQNEFFYQSCTNLPASPGSVRGSFTFVPGRLADPKGSPFEVVVAEFPLQRPDY 359
            YPLL  G+ EF Y+SC++ P + GS+ GSFTFVPG L DPKGS FEV V EFPL+ PDY
Sbjct: 375 KYPLLQAGEEEFVYESCSSFPTTAGSIDGSFTFVPGSLRDPKGSQFEVKVVEFPLELPDY 434

Query: 360 IF 361
           IF
Sbjct: 435 IF 436
Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|Q82UC1|APAG_NITEU Protein ApaG OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) GN=apaG PE=3 SV=1 Back     alignment and function description
>sp|Q47AB8|APAG_DECAR Protein ApaG OS=Dechloromonas aromatica (strain RCB) GN=apaG PE=3 SV=1 Back     alignment and function description
>sp|Q9UK99|FBX3_HUMAN F-box only protein 3 OS=Homo sapiens GN=FBXO3 PE=1 SV=3 Back     alignment and function description
>sp|D4ABP9|FBX3_RAT F-box only protein 3 OS=Rattus norvegicus GN=Fbxo3 PE=3 SV=1 Back     alignment and function description
>sp|A6H7H7|FBX3_BOVIN F-box only protein 3 OS=Bos taurus GN=FBXO3 PE=2 SV=1 Back     alignment and function description
>sp|Q2IGT4|APAG_ANADE Protein ApaG OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=apaG PE=3 SV=1 Back     alignment and function description
>sp|Q9DC63|FBX3_MOUSE F-box only protein 3 OS=Mus musculus GN=Fbxo3 PE=2 SV=1 Back     alignment and function description
>sp|Q7VU61|APAG_BORPE Protein ApaG OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) GN=apaG PE=1 SV=1 Back     alignment and function description
>sp|Q7W393|APAG_BORPA Protein ApaG OS=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) GN=apaG PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query361
182407842443 F-box-containing protein 2 [Malus x dome 1.0 0.814 0.686 1e-146
363807331443 uncharacterized protein LOC100778108 [Gl 1.0 0.814 0.686 1e-146
225433984444 PREDICTED: F-box protein SKIP16-like [Vi 0.997 0.810 0.692 1e-144
388508926444 unknown [Lotus japonicus] 0.997 0.810 0.673 1e-143
359478141443 PREDICTED: F-box protein SKIP16-like [Vi 1.0 0.814 0.675 1e-143
255577191446 protein with unknown function [Ricinus c 1.0 0.809 0.670 1e-142
224093067443 predicted protein [Populus trichocarpa] 1.0 0.814 0.670 1e-141
224133222442 predicted protein [Populus trichocarpa] 0.991 0.809 0.673 1e-141
359806703443 uncharacterized protein LOC100809876 [Gl 1.0 0.814 0.684 1e-140
357473077443 F-box protein SKIP16 [Medicago truncatul 1.0 0.814 0.662 1e-140
>gi|182407842|gb|ACB87912.1| F-box-containing protein 2 [Malus x domestica] Back     alignment and taxonomy information
 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 250/364 (68%), Positives = 297/364 (81%), Gaps = 3/364 (0%)

Query: 1   MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILY 60
           MYPW LVKRVKRCWD+++NWL  NFPEA +TL+KGASEADIQ++EK LKVKLP+PTRILY
Sbjct: 80  MYPWSLVKRVKRCWDKIRNWLTINFPEAVSTLKKGASEADIQEVEKILKVKLPLPTRILY 139

Query: 61  RFCDGQECQTDDFES--IGA-MGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPG 117
           RF +GQ  +   F++  +G  +GLIGGY+FY  LV VYL+PL  +++ET +IRR L F G
Sbjct: 140 RFHNGQAFEEKHFQNNLVGCPLGLIGGYAFYDQLVTVYLMPLRQVVLETMKIRRKLGFTG 199

Query: 118 RDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQ 177
           R +YVVVA S  YS K FFLNCT+GQLYVGT+NL +DG+M+PCVP+ALI+  H CN D+Q
Sbjct: 200 RSEYVVVADSCAYSGKLFFLNCTSGQLYVGTRNLPTDGQMLPCVPDALISSIHDCNVDRQ 259

Query: 178 QDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASAVFIPE 237
           QDGMLLWLEEHGRRL NGII+LR EEN + I+ FPEE PLCS A+TNGVK+RASAVF+PE
Sbjct: 260 QDGMLLWLEEHGRRLENGIIKLRQEENFRTISQFPEESPLCSTAITNGVKVRASAVFVPE 319

Query: 238 LADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAV 297
            AD E+ +EKY F+YSIRMS LPEGCVINGM FSSCQL RRHWII +N+VVV+ V GEAV
Sbjct: 320 CADLENTSEKYTFSYSIRMSFLPEGCVINGMPFSSCQLNRRHWIIRSNDVVVADVGGEAV 379

Query: 298 IGMYPLLHPGQNEFFYQSCTNLPASPGSVRGSFTFVPGRLADPKGSPFEVVVAEFPLQRP 357
           IG YPLL PG+ EF Y+S + LP+S GS+ GSFTFVPG L  PKG PFEV VA FPLQ P
Sbjct: 380 IGQYPLLRPGEEEFVYESYSCLPSSSGSIEGSFTFVPGSLRVPKGGPFEVAVARFPLQLP 439

Query: 358 DYIF 361
           +YIF
Sbjct: 440 NYIF 443

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|363807331|ref|NP_001242370.1| uncharacterized protein LOC100778108 [Glycine max] gi|255641731|gb|ACU21136.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|225433984|ref|XP_002271000.1| PREDICTED: F-box protein SKIP16-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|388508926|gb|AFK42529.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|359478141|ref|XP_002271295.2| PREDICTED: F-box protein SKIP16-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255577191|ref|XP_002529478.1| protein with unknown function [Ricinus communis] gi|223531036|gb|EEF32888.1| protein with unknown function [Ricinus communis] Back     alignment and taxonomy information
>gi|224093067|ref|XP_002309790.1| predicted protein [Populus trichocarpa] gi|222852693|gb|EEE90240.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224133222|ref|XP_002327990.1| predicted protein [Populus trichocarpa] gi|222837399|gb|EEE75778.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359806703|ref|NP_001241035.1| uncharacterized protein LOC100809876 [Glycine max] gi|255635912|gb|ACU18303.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|357473077|ref|XP_003606823.1| F-box protein SKIP16 [Medicago truncatula] gi|355507878|gb|AES89020.1| F-box protein SKIP16 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query361
TAIR|locus:2198826436 SKIP16 "SKP1/ASK-interacting p 0.986 0.816 0.591 9.4e-114
UNIPROTKB|A6H7H7469 FBXO3 "F-box only protein 3" [ 0.365 0.281 0.270 1.6e-14
UNIPROTKB|Q9UK99471 FBXO3 "F-box only protein 3" [ 0.365 0.280 0.270 1.6e-14
RGD|1593433480 Fbxo3 "F-box protein 3" [Rattu 0.365 0.275 0.270 2.3e-14
MGI|MGI:1929084480 Fbxo3 "F-box protein 3" [Mus m 0.365 0.275 0.270 1.5e-13
ZFIN|ZDB-GENE-050522-269451 fbxo3 "F-box protein 3" [Danio 0.354 0.283 0.269 4.4e-13
UNIPROTKB|Q60C69126 apaG "Protein ApaG" [Methyloco 0.318 0.912 0.333 2.5e-09
DICTYBASE|DDB_G0282285525 DDB_G0282285 "ApaG domain-cont 0.357 0.245 0.333 2.2e-08
UNIPROTKB|Q8EB92126 apaG "Protein ApaG" [Shewanell 0.332 0.952 0.270 1e-06
TIGR_CMR|SO_3640126 SO_3640 "apaG protein" [Shewan 0.332 0.952 0.270 1e-06
TAIR|locus:2198826 SKIP16 "SKP1/ASK-interacting protein 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1122 (400.0 bits), Expect = 9.4e-114, P = 9.4e-114
 Identities = 214/362 (59%), Positives = 260/362 (71%)

Query:     1 MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILY 60
             MYPW LVKRV+ CWD LK WL  NFPEAKATLRKG +E D+Q+ E SLKVKLP+PTR+LY
Sbjct:    80 MYPWNLVKRVRLCWDNLKQWLTLNFPEAKATLRKGVTEDDLQEFETSLKVKLPLPTRLLY 139

Query:    61 RFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKE-IRRHLDFPGRD 119
             RF DGQE  + +    G++GLIGGYS Y H VNVYL+PL  ++ ETKE   R L F  R 
Sbjct:   140 RFVDGQELSSPNGLD-GSLGLIGGYSAYSHDVNVYLLPLKEVMRETKESFMRDLGFSSRL 198

Query:   120 KYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQD 179
               +V+A S   S K F L+CT GQL+ GT N     +++PCVP+AL+   H  N DQQQD
Sbjct:   199 DLIVMAASVVASLKIFLLDCTTGQLFTGTSNR----QLLPCVPDALVRSVHDTNGDQQQD 254

Query:   180 GMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASAVFIPELA 239
              MLLWLEEHGRRL  G I +R + N+K I+LFPE PPLCS++VTNGV++RAS+VFIPE++
Sbjct:   255 AMLLWLEEHGRRLQTGTINVRQQNNVKSISLFPEIPPLCSVSVTNGVQVRASSVFIPEIS 314

Query:   240 DPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHAXXXXXXXXXGEAVIG 299
             +       Y +AYSIRMSL+PEGC++NG   SSCQL  RHW+I A         GEAVIG
Sbjct:   315 NLRDQPPAYWYAYSIRMSLMPEGCILNGTHHSSCQLYWRHWVIRADNEVIDNVNGEAVIG 374

Query:   300 MYPLLHPGQNEFFYQSCTNLPASPGSVRGSFTFVPGRLADPKGSPFEVVVAEFPLQRPDY 359
              YPLL  G+ EF Y+SC++ P + GS+ GSFTFVPG L DPKGS FEV V EFPL+ PDY
Sbjct:   375 KYPLLQAGEEEFVYESCSSFPTTAGSIDGSFTFVPGSLRDPKGSQFEVKVVEFPLELPDY 434

Query:   360 IF 361
             IF
Sbjct:   435 IF 436
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005515 "protein binding" evidence=IPI
GO:0019005 "SCF ubiquitin ligase complex" evidence=IPI
GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA
UNIPROTKB|A6H7H7 FBXO3 "F-box only protein 3" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UK99 FBXO3 "F-box only protein 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1593433 Fbxo3 "F-box protein 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1929084 Fbxo3 "F-box protein 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050522-269 fbxo3 "F-box protein 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q60C69 apaG "Protein ApaG" [Methylococcus capsulatus str. Bath (taxid:243233)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0282285 DDB_G0282285 "ApaG domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q8EB92 apaG "Protein ApaG" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3640 SO_3640 "apaG protein" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LND7SKI16_ARATHNo assigned EC number0.59940.98610.8165yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query361
pfam0437990 pfam04379, DUF525, Protein of unknown function (DU 8e-26
PRK05461127 PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Rev 1e-24
COG2967126 COG2967, ApaG, Uncharacterized protein affecting M 9e-18
COG4282191 COG4282, SMI1, Protein involved in beta-1,3-glucan 2e-09
>gnl|CDD|202989 pfam04379, DUF525, Protein of unknown function (DUF525) Back     alignment and domain information 
 Score = 98.7 bits (247), Expect = 8e-26
 Identities = 40/102 (39%), Positives = 51/102 (50%), Gaps = 12/102 (11%)

Query: 235 IPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSG 294
           +PE + PE    +Y+FAY+I +  L            + QL  RHWII   N  V  V G
Sbjct: 1   LPEQSSPEEG--RYVFAYTITIENLGP---------ETVQLLSRHWIITDANGKVEEVRG 49

Query: 295 EAVIGMYPLLHPGQNEFFYQSCTNLPASPGSVRGSFTFVPGR 336
           E V+G  PLL PG+  F Y S T L    GS+ GS+T V   
Sbjct: 50  EGVVGEQPLLAPGE-SFEYTSGTPLETPSGSMEGSYTMVDED 90

Members of this family include the bacterial protein ApaG and the C termini of some F-box proteins (pfam00646). F-box proteins contain a carboxyl-terminal domain that interacts with protein substrates, so this family may be involved in protein-protein interaction. The function of ApaG proteins is unknown, but mutations in the Salmonella typhimurium ApaG homologue corD gives a phenotype of low-level cobalt resistance and decreased magnesium efflux by effects on the CorA magnesium transport system. Length = 90
>gnl|CDD|180098 PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed Back     alignment and domain information
>gnl|CDD|225515 COG2967, ApaG, Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|226732 COG4282, SMI1, Protein involved in beta-1,3-glucan synthesis [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 361
KOG4408386 consensus Putative Mg2+ and Co2+ transporter CorD 100.0
PRK05461127 apaG CO2+/MG2+ efflux protein ApaG; Reviewed 100.0
COG2967126 ApaG Uncharacterized protein affecting Mg2+/Co2+ t 100.0
PF0437990 DUF525: Protein of unknown function (DUF525); Inte 100.0
COG4282191 SMI1 Protein involved in beta-1,3-glucan synthesis 99.82
PF09346130 SMI1_KNR4: SMI1 / KNR4 family (SUKH-1); InterPro: 98.5
smart00860129 SMI1_KNR4 SMI1 / KNR4 family. Proteins in this fam 97.9
PF14568120 SUKH_6: SMI1-KNR4 cell-wall; PDB: 2PRV_A. 97.34
PF14567132 SUKH_5: SMI1-KNR4 cell-wall; PDB: 2PAG_A. 96.66
KOG4408386 consensus Putative Mg2+ and Co2+ transporter CorD 91.33
PF11611123 DUF4352: Domain of unknown function (DUF4352); Int 84.42
PRK04968181 SecY interacting protein Syd; Provisional 80.36
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=4.3e-65  Score=482.37  Aligned_cols=285  Identities=27%  Similarity=0.471  Sum_probs=238.4

Q ss_pred             CCCChhHHHHHHHHHH-HHHHHHhhChhhhhhcCCCCCHHHHHHHHHHcCCCCChhhhhheeecCCccCCCCCccccccc
Q 018092            1 MYPWPLVKRVKRCWDR-LKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAM   79 (361)
Q Consensus         1 ~~~~~~~~~v~~~W~r-ie~wl~~~~p~~~~~L~~gate~~i~~~E~~lg~~LP~~~r~~yr~hnGq~~~~~~~~~~~~~   79 (361)
                      ||||.++.+|.-.|+. +++|...+.|+..++|+.||+|.|++++|+.+|++||.++|++||.+|||...        .+
T Consensus        75 h~~f~yvgvv~~~w~arlk~wd~ln~~~~~aal~ega~e~dl~a~e~s~~~kLp~~~r~~yrev~Gq~l~--------~y  146 (386)
T KOG4408|consen   75 HDTFGYVGVVLFPWAARLKDWDDLNKYLEPAALKEGAREPDLDAVEASIGCKLPDDYRCSYREVKGQTLT--------FY  146 (386)
T ss_pred             eeecccceEEEEechHhhhhhhhcccccccchhhccCcccchhhhhhcccccCCCccccchhhcCCeEEe--------eh
Confidence            6899999999999997 99999999999999999999999999999999999999999999999999997        68


Q ss_pred             ccccceeeccceeeeeccChhhHHHHHHHHHHhcCCCCCCceEEEeeecCccceEEEEEecCCeeEEeeeccCCCCccee
Q 018092           80 GLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIP  159 (361)
Q Consensus        80 Gl~ggy~~y~~~~~~~LL~L~~i~~~tq~~rq~L~d~~~~~~i~~~as~~~~~k~f~ld~~~G~~yVg~~n~~~~geiip  159 (361)
                      |++|+|..|+|.+       .++..+..+.--  ++..+.             +  ++-|++|.+||.      |.+|+|
T Consensus       147 qvLi~~~d~sH~~-------~ev~~e~~t~~~--nf~~r~-------------~--L~y~ipgld~v~------hedilp  196 (386)
T KOG4408|consen  147 QVLIDMRDCSHIR-------SEVQTEAVTFLG--NFDSRQ-------------G--LKYAIPGLDYVS------HEDILP  196 (386)
T ss_pred             heeeecccCcccc-------chhhhhhhhhhc--Cccccc-------------c--hheecccceeEe------eccccc
Confidence            9999999999998       333333332211  111011             1  123556666664      666666


Q ss_pred             cCCccccccCCC--------------CCCccchhHHHHHHH-HhccccccCcEEEEecCCcceeeccCCCCCceeeeeeC
Q 018092          160 CVPNALIALGHG--------------CNSDQQQDGMLLWLE-EHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTN  224 (361)
Q Consensus       160 c~p~~~i~~~hd--------------~~~~~~~ds~~~Wle-~~~~~Le~G~~~v~~~~~~r~i~~fp~~~p~~~~~~T~  224 (361)
                      |++.+..+..|+              .++|..+|+|++|+| ++     .|.+.+++      |+          .+||+
T Consensus       197 yts~e~~~g~heLf~~~pdl~r~~~~~~~f~~q~tl~~W~e~kn-----~gwl~~~d------Vh----------~etTe  255 (386)
T KOG4408|consen  197 YTSSEAVPGQHELFDQFPDLARDPAAIPPFVIQDTLTAWQESKN-----HGWLPIRD------VH----------RETTE  255 (386)
T ss_pred             cccccccccchhhhhhhhhhhcCcccCCchhhhHHHHHHHhcCC-----CCCcChhh------CC----------hhhcC
Confidence            666666555554              466899999999999 44     44444442      22          25999


Q ss_pred             CeEEEEEeEEeccccCCCCCCCeeEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCCccEEeeeeCcccCCceeE
Q 018092          225 GVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIGMYPLL  304 (361)
Q Consensus       225 gI~V~v~~~y~~~~s~~~~~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~vqL~~R~W~I~~~~g~~~~V~G~GVvG~~P~l  304 (361)
                      ||+|+|+++|+|+.|.+.  ++.|||+|+|||||        +...++|||.+|||+|++.+|.+++|+|+||||++|+|
T Consensus       256 nI~Vtvstfylge~s~~~--pp~YwwrY~IRien--------~l~e~svQLreRhWrI~slng~le~V~G~gVVGk~PiL  325 (386)
T KOG4408|consen  256 NIRVTVSTFYLGERSSVH--PPVYWWRYCIRIEN--------ALPEKSVQLRERHWRIFSLNGTLETVRGRGVVGKEPIL  325 (386)
T ss_pred             CeEEEEEEeeecccccCC--CCceEEEEEEEeec--------CCCCcceEEeEeeEEEEecccchhhccccceecccccc
Confidence            999999999999999996  69999999999998        34569999999999999999999999999999999999


Q ss_pred             cCCCcceEEeecccccCCCeeeeeEEEEeeCccCCCCCCeEEEEeccccCCCCCC
Q 018092          305 HPGQNEFFYQSCTNLPASPGSVRGSFTFVPGRLADPKGSPFEVVVAEFPLQRPDY  359 (361)
Q Consensus       305 ~pg~~~f~Y~S~~~l~t~~G~M~G~f~~~~~~l~~~~g~~F~v~Ip~F~L~~P~~  359 (361)
                      .||+|+|||+||++|+|++|+|||.|.|.     +++|..|+|+||+|+|++|++
T Consensus       326 s~g~paFqYsSc~sl~ttsGhMwGtF~fe-----r~~G~lfDvkip~F~~es~ef  375 (386)
T KOG4408|consen  326 SAGRPAFQYSSCVSLQTTSGHMWGTFRFE-----REDGSLFDVKIPPFSLESPEF  375 (386)
T ss_pred             CCCCcceEEeeeeeeccCCccceeeEEEE-----ecCCccccccCCceEeecccc
Confidence            99999999999999999999999999888     688999999999999988765

>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed Back     alignment and domain information
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO) Back     alignment and domain information
>COG4282 SMI1 Protein involved in beta-1,3-glucan synthesis [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF09346 SMI1_KNR4: SMI1 / KNR4 family (SUKH-1); InterPro: IPR018958 Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation [, ] Back     alignment and domain information
>smart00860 SMI1_KNR4 SMI1 / KNR4 family Back     alignment and domain information
>PF14568 SUKH_6: SMI1-KNR4 cell-wall; PDB: 2PRV_A Back     alignment and domain information
>PF14567 SUKH_5: SMI1-KNR4 cell-wall; PDB: 2PAG_A Back     alignment and domain information
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32 Back     alignment and domain information
>PRK04968 SecY interacting protein Syd; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query361
1xq4_A139 Crystal Structure Of The Putative Apaa Protein From 3e-10
1tza_A134 X-Ray Structure Of Northeast Structural Genomics Co 2e-06
1xvs_A126 Crystal Structure Of Apag Protein From Vibrio Chole 6e-06
2f1e_A127 Solution Structure Of Apag Protein Length = 127 1e-05
>pdb|1XQ4|A Chain A, Crystal Structure Of The Putative Apaa Protein From Bordetella Pertussis, Northeast Structural Genomics Target Ber40 Length = 139 Back     alignment and structure 
Iteration: 1

 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 61/132 (46%), Gaps = 17/132 (12%)
Query: 226 VKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHAX 285
           + +  +  ++PE +DP    ++Y+FAY++R         I        Q+  RHWII   
Sbjct: 13  LTVSVTPRYVPEQSDPSQ--QQYVFAYTVR---------ITNTGSHPAQVISRHWIITDG 61
Query: 286 XXXXXXXXGEAVIGMYPLLHPGQNEFFYQSCTNLPASPGSVRGSFTFVPGRLADPKGSPF 345
                   G  V+G  PLL PG+  F Y S   LP   G+ RG++  V        G PF
Sbjct: 62  EERVQEVRGLGVVGQQPLLAPGET-FEYTSGCPLPTPIGTXRGTYHCV-----GENGIPF 115
Query: 346 EVVVAEFPLQRP 357
           EV +AEF L  P
Sbjct: 116 EVPIAEFLLAXP 127
>pdb|1TZA|A Chain A, X-Ray Structure Of Northeast Structural Genomics Consortium Target Sor45 Length = 134 Back     alignment and structure
>pdb|1XVS|A Chain A, Crystal Structure Of Apag Protein From Vibrio Cholerae Length = 126 Back     alignment and structure
>pdb|2F1E|A Chain A, Solution Structure Of Apag Protein Length = 127 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query361
1tza_A134 APAG protein, SOR45; structural genomics, PSI, pro 2e-34
1xq4_A139 Protein APAG; all beta protein, structural genomic 1e-32
1xvs_A126 Protein APAG; MCSG APC26324, midwest center for st 5e-31
2f1e_A127 Protein APAG; APAG protein, xanthomonas axonopodis 6e-31
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
2prv_A153 Uncharacterized protein YOBK; structural genomics, 3e-04
2icg_A160 LIN2918 protein; hypothetical protein, structural 6e-04
>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1 Length = 134 Back     alignment and structure
 Score =  122 bits (308), Expect = 2e-34
 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 17/140 (12%)

Query: 221 AVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHW 280
           A+ N +++     +I + + PE +  KYLF+Y+I +  L E          + +L+ RHW
Sbjct: 3   ALDNSIRVEVKTEYIEQQSSPEDE--KYLFSYTITIINLGE---------QAAKLETRHW 51

Query: 281 IIHANNVVVSVVSGEAVIGMYPLLHPGQNEFFYQSCTNLPASPGSVRGSFTFVPGRLADP 340
           II   N   S V G  V+G  P + P    + Y S T L    G + G++  V       
Sbjct: 52  IITDANGKTSEVQGAGVVGETPTIPPNT-AYQYTSGTVLDTPFGIMYGTYGMV-----SE 105

Query: 341 KGSPFEVVVAEFPLQRPDYI 360
            G  F  ++  F L  P  +
Sbjct: 106 SGEHFNAIIKPFRLATPGLL 125
>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1 Length = 139 Back     alignment and structure
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1 Length = 126 Back     alignment and structure
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV} Length = 127 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2prv_A Uncharacterized protein YOBK; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.30A {Bacillus subtilis} SCOP: d.369.1.1 Length = 153 Back     alignment and structure
>2icg_A LIN2918 protein; hypothetical protein, structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 1.65A {Listeria innocua} SCOP: d.369.1.1 Length = 160 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query361
2f1e_A127 Protein APAG; APAG protein, xanthomonas axonopodis 100.0
1xvs_A126 Protein APAG; MCSG APC26324, midwest center for st 100.0
1tza_A134 APAG protein, SOR45; structural genomics, PSI, pro 100.0
1xq4_A139 Protein APAG; all beta protein, structural genomic 100.0
3d5p_A144 Putative glucan synthesis regulator of SMI1/KNR4; 98.57
2icg_A160 LIN2918 protein; hypothetical protein, structural 98.33
2pag_A135 Hypothetical protein; nysgx, target 10412I, novel 98.19
2prv_A153 Uncharacterized protein YOBK; structural genomics, 98.12
3nrf_A106 APAG protein; structural genomics, joint center fo 80.01
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV} Back     alignment and structure
Probab=100.00  E-value=3.8e-49  Score=333.79  Aligned_cols=125  Identities=32%  Similarity=0.573  Sum_probs=112.0

Q ss_pred             eeeeeCCeEEEEEeEEeccccCCCCCCCeeEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCCccEEeeeeCccc
Q 018092          219 SIAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVI  298 (361)
Q Consensus       219 ~~~~T~gI~V~v~~~y~~~~s~~~~~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~vqL~~R~W~I~~~~g~~~~V~G~GVv  298 (361)
                      ++++|+||+|+|+|.|+|++|+|.+  ++|+|+|+|||+|       .|.  .+|||++|||+|+|++|++++|+|+|||
T Consensus         2 ~~~~t~~I~V~V~~~y~~e~S~p~~--~~y~faY~I~I~N-------~~~--~~vQL~sRhW~Itd~~g~~~eV~G~GVV   70 (127)
T 2f1e_A            2 QDDPRYRVEVEVSPRFLAHQSTPDE--GRYAFAYSIRIQN-------AGA--VPARLVARHWQITDGNGRTEQVDGEGVV   70 (127)
T ss_dssp             ----CCCEEEEEEEEECSTTCBGGG--TBEEEEEEEEEEE-------CSS--SCEEEEEEEEEEEETTSCEEEEEESSBT
T ss_pred             ccceECCEEEEEEEEEchhhCCCcC--CEEEEEEEEEEEe-------CCC--CCEEEEeceEEEEeCCCCEEEEECCCee
Confidence            4689999999999999999999974  9999999999999       444  8999999999999999999999999999


Q ss_pred             CCceeEcCCCcceEEeecccccCCCeeeeeEEEEeeCccCCCCCCeEEEEeccccCCCCCCC
Q 018092          299 GMYPLLHPGQNEFFYQSCTNLPASPGSVRGSFTFVPGRLADPKGSPFEVVVAEFPLQRPDYI  360 (361)
Q Consensus       299 G~~P~l~pg~~~f~Y~S~~~l~t~~G~M~G~f~~~~~~l~~~~g~~F~v~Ip~F~L~~P~~~  360 (361)
                      |+||+|.||+ +|+|+|||.|+||.|+|+|+|+|+     +++|+.|+|.||+|+|++|.+|
T Consensus        71 G~qP~L~PGe-~f~YtSg~~L~tp~G~M~G~y~m~-----~~~G~~F~v~Ip~F~L~~P~~l  126 (127)
T 2f1e_A           71 GEQPWLRPGE-AFHYTSGVLLETEQGQMQGHYDMV-----ADDGTEFIAPIAAFVLSVPRTL  126 (127)
T ss_dssp             TBCCEECTTC-EEEEEEEEEESSSCEEEEEEEEEE-----ETTCCEEEEEEEEEEEC-----
T ss_pred             cCCCcCCCCC-ceEEeCCcCcCCCcEEEEEEEEEE-----ECCCCEEEEECCceEcCCCccc
Confidence            9999999999 999999999999999999999998     5789999999999999999875
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1 Back     alignment and structure
>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1 Back     alignment and structure
>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1 Back     alignment and structure
>3d5p_A Putative glucan synthesis regulator of SMI1/KNR4; STR genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Bacteroides fragilis nctc 9343} Back     alignment and structure
>2icg_A LIN2918 protein; hypothetical protein, structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 1.65A {Listeria innocua} SCOP: d.369.1.1 Back     alignment and structure
>2pag_A Hypothetical protein; nysgx, target 10412I, novel fold, structural genomics, PSI-2 structure initiative; 1.60A {Pseudomonas syringae PV} SCOP: d.369.1.1 Back     alignment and structure
>2prv_A Uncharacterized protein YOBK; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.30A {Bacillus subtilis} SCOP: d.369.1.1 Back     alignment and structure
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 361
d1tzaa_132 b.1.23.1 (A:) ApaG {Shewanella oneidensis [TaxId: 6e-35
d1xvsa_124 b.1.23.1 (A:) ApaG {Vibrio cholerae [TaxId: 666]} 2e-31
d1xq4a_123 b.1.23.1 (A:) ApaG {Bordetella pertussis [TaxId: 5 2e-30
d2prva1152 d.369.1.1 (A:1-152) Uncharacterized protein YobK { 9e-11
d2icga1158 d.369.1.1 (A:1-158) Uncharacterized protein Lin291 0.001
>d1tzaa_ b.1.23.1 (A:) ApaG {Shewanella oneidensis [TaxId: 70863]} Length = 132 Back     information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: ApaG-like
family: ApaG-like
domain: ApaG
species: Shewanella oneidensis [TaxId: 70863]

 Score =  122 bits (308), Expect = 6e-35
 Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 17/137 (12%)

Query: 221 AVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHW 280
           A+ N +++     +I + + PE +  KYLF+Y+I +  L E          + +L+ RHW
Sbjct: 1   ALDNSIRVEVKTEYIEQQSSPEDE--KYLFSYTITIINLGE---------QAAKLETRHW 49

Query: 281 IIHANNVVVSVVSGEAVIGMYPLLHPGQNEFFYQSCTNLPASPGSVRGSFTFVPGRLADP 340
           II   N   S V G  V+G  P + P    + Y S T L    G + G++  V       
Sbjct: 50  IITDANGKTSEVQGAGVVGETPTIPPNT-AYQYTSGTVLDTPFGIMYGTYGMV-----SE 103

Query: 341 KGSPFEVVVAEFPLQRP 357
            G  F  ++  F L  P
Sbjct: 104 SGEHFNAIIKPFRLATP 120
>d1xvsa_ b.1.23.1 (A:) ApaG {Vibrio cholerae [TaxId: 666]} Length = 124 Back     information, alignment and structure
>d1xq4a_ b.1.23.1 (A:) ApaG {Bordetella pertussis [TaxId: 520]} Length = 123 Back     information, alignment and structure
>d2prva1 d.369.1.1 (A:1-152) Uncharacterized protein YobK {Bacillus subtilis [TaxId: 1423]} Length = 152 Back     information, alignment and structure
>d2icga1 d.369.1.1 (A:1-158) Uncharacterized protein Lin2918 {Listeria innocua [TaxId: 1642]} Length = 158 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query361
d1tzaa_132 ApaG {Shewanella oneidensis [TaxId: 70863]} 100.0
d1xvsa_124 ApaG {Vibrio cholerae [TaxId: 666]} 100.0
d1xq4a_123 ApaG {Bordetella pertussis [TaxId: 520]} 100.0
d2prva1152 Uncharacterized protein YobK {Bacillus subtilis [T 99.37
d2icga1158 Uncharacterized protein Lin2918 {Listeria innocua 98.82
d2paga1135 Hypothetical protein PSPTO5518 {Pseudomonas syring 97.66
>d1tzaa_ b.1.23.1 (A:) ApaG {Shewanella oneidensis [TaxId: 70863]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: ApaG-like
family: ApaG-like
domain: ApaG
species: Shewanella oneidensis [TaxId: 70863]

Probab=100.00  E-value=5.1e-47  Score=320.00  Aligned_cols=123  Identities=32%  Similarity=0.612  Sum_probs=117.4

Q ss_pred             eeeCCeEEEEEeEEeccccCCCCCCCeeEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCCccEEeeeeCcccCC
Q 018092          221 AVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIGM  300 (361)
Q Consensus       221 ~~T~gI~V~v~~~y~~~~s~~~~~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~vqL~~R~W~I~~~~g~~~~V~G~GVvG~  300 (361)
                      |+|+||+|+|.|+|+|++|++.+  .+|+|+|+|||+|       .+.  .+|||++|||+|+|++|++++|+|+||||+
T Consensus         1 a~t~gI~V~V~t~y~~e~S~p~~--~~y~F~Y~ItI~N-------~~~--~~vQLlsR~W~I~d~~G~~~eV~G~GVVG~   69 (132)
T d1tzaa_           1 ALDNSIRVEVKTEYIEQQSSPED--EKYLFSYTITIIN-------LGE--QAAKLETRHWIITDANGKTSEVQGAGVVGE   69 (132)
T ss_dssp             CGGGTEEEEEEEEEEEECCBTTB--CCEEEEEEEEEEE-------CSS--SCEEEEEEEEEEEETTSCEEEEEEESBTTB
T ss_pred             CccCCEEEEEEEEEchhcCCCCC--CeEEEEEEEEEEe-------CCC--CCEEEEeeEEEEECCCCCEEEEeCCCccCC
Confidence            58999999999999999999985  8999999999999       444  899999999999999999999999999999


Q ss_pred             ceeEcCCCcceEEeecccccCCCeeeeeEEEEeeCccCCCCCCeEEEEeccccCCCCCCC
Q 018092          301 YPLLHPGQNEFFYQSCTNLPASPGSVRGSFTFVPGRLADPKGSPFEVVVAEFPLQRPDYI  360 (361)
Q Consensus       301 ~P~l~pg~~~f~Y~S~~~l~t~~G~M~G~f~~~~~~l~~~~g~~F~v~Ip~F~L~~P~~~  360 (361)
                      ||+|+||+ .|+|+|+|.|+||.|+|+|+|+|+     +++|+.|+|.||+|+|.+|..|
T Consensus        70 qPvl~PGe-~f~Y~S~~~l~t~~G~M~G~y~m~-----~~~g~~F~v~Ip~F~L~~P~~l  123 (132)
T d1tzaa_          70 TPTIPPNT-AYQYTSGTVLDTPFGIMYGTYGMV-----SESGEHFNAIIKPFRLATPGLL  123 (132)
T ss_dssp             CCEECTTE-EEEEEEEEEESSSEEEEEEEEEEE-----ETTCCEEEEEEEEEEEECTTSS
T ss_pred             cCccCCCC-CEEEeCCCCccCCceEEEEEEEEE-----ECCCCEEEEECCCEECCCCchh
Confidence            99999999 999999999999999999999999     5789999999999999999875
>d1xvsa_ b.1.23.1 (A:) ApaG {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1xq4a_ b.1.23.1 (A:) ApaG {Bordetella pertussis [TaxId: 520]} Back     information, alignment and structure
>d2prva1 d.369.1.1 (A:1-152) Uncharacterized protein YobK {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2icga1 d.369.1.1 (A:1-158) Uncharacterized protein Lin2918 {Listeria innocua [TaxId: 1642]} Back     information, alignment and structure
>d2paga1 d.369.1.1 (A:1-135) Hypothetical protein PSPTO5518 {Pseudomonas syringae pv. tomato [TaxId: 323]} Back     information, alignment and structure